Query 025973
Match_columns 245
No_of_seqs 120 out of 1829
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 21:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-39 3.8E-44 264.6 27.9 238 8-245 2-282 (282)
2 4f02_A Polyadenylate-binding p 100.0 7.4E-37 2.5E-41 238.2 20.9 167 7-244 7-179 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 1.3E-35 4.3E-40 222.1 21.0 159 16-245 1-166 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 6.9E-35 2.4E-39 218.6 20.2 157 14-243 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 1.3E-34 4.4E-39 216.8 20.6 157 14-243 1-167 (167)
6 2adc_A Polypyrimidine tract-bi 100.0 1.6E-34 5.6E-39 227.4 19.7 196 10-245 29-227 (229)
7 2qfj_A FBP-interacting repress 100.0 9.2E-34 3.2E-38 220.9 21.8 170 13-244 26-203 (216)
8 1l3k_A Heterogeneous nuclear r 100.0 6.6E-34 2.2E-38 218.5 20.1 167 9-244 7-181 (196)
9 1qm9_A Polypyrimidine tract-bi 100.0 4.9E-34 1.7E-38 219.8 17.8 192 14-245 2-196 (198)
10 3tyt_A Heterogeneous nuclear r 100.0 1.2E-33 4.1E-38 218.2 18.7 193 13-243 2-204 (205)
11 3nmr_A Cugbp ELAV-like family 100.0 1.6E-33 5.4E-38 212.5 18.7 158 14-243 2-174 (175)
12 2cjk_A Nuclear polyadenylated 100.0 8.8E-34 3E-38 212.4 14.6 155 14-244 2-164 (167)
13 2g4b_A Splicing factor U2AF 65 100.0 5.2E-33 1.8E-37 209.2 17.2 154 13-243 2-171 (172)
14 2yh0_A Splicing factor U2AF 65 100.0 1.3E-32 4.5E-37 211.6 19.3 175 13-244 2-192 (198)
15 1fje_B Nucleolin RBD12, protei 100.0 1.9E-33 6.6E-38 212.2 13.7 163 9-244 7-172 (175)
16 3smz_A Protein raver-1, ribonu 100.0 1.6E-31 5.6E-36 216.8 21.7 163 12-244 92-262 (284)
17 2ghp_A U4/U6 snRNA-associated 100.0 2.6E-31 9E-36 216.4 18.1 165 14-245 116-290 (292)
18 3smz_A Protein raver-1, ribonu 100.0 6.9E-31 2.4E-35 213.1 20.3 150 12-244 19-173 (284)
19 3sde_A Paraspeckle component 1 100.0 8.5E-31 2.9E-35 210.0 18.6 154 9-244 16-177 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.1E-30 1E-34 210.1 17.4 154 10-244 36-195 (292)
21 2i2y_A Fusion protein consists 99.9 7.1E-24 2.4E-28 155.8 12.2 137 54-244 9-146 (150)
22 4f25_A Polyadenylate-binding p 99.9 3E-23 1E-27 145.5 9.9 81 13-97 3-84 (115)
23 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-22 4.2E-27 150.4 13.7 76 169-244 68-148 (158)
24 2a3j_A U1 small nuclear ribonu 99.9 8.8E-23 3E-27 144.9 11.3 99 4-102 18-116 (127)
25 4fxv_A ELAV-like protein 1; RN 99.9 5E-21 1.7E-25 130.3 11.0 75 170-244 18-97 (99)
26 4fxv_A ELAV-like protein 1; RN 99.9 3.7E-21 1.3E-25 131.0 10.1 80 12-95 16-98 (99)
27 3r27_A HnRNP L, heterogeneous 99.9 6.4E-21 2.2E-25 128.6 10.7 78 167-245 17-96 (100)
28 1nu4_A U1A RNA binding domain; 99.8 3.3E-21 1.1E-25 131.0 8.6 91 10-100 3-93 (97)
29 2dgx_A KIAA0430 protein; RRM d 99.8 2.2E-20 7.6E-25 126.5 10.6 90 8-97 2-91 (96)
30 2diu_A KIAA0430 protein; struc 99.8 1.6E-20 5.4E-25 123.3 9.4 83 10-99 3-87 (96)
31 2cq1_A PTB-like protein L; RRM 99.8 9.6E-20 3.3E-24 124.0 12.9 76 169-245 13-90 (101)
32 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-20 3.7E-25 132.4 8.4 83 11-97 4-86 (115)
33 3r27_A HnRNP L, heterogeneous 99.8 2.9E-20 9.9E-25 125.3 9.7 83 8-97 14-98 (100)
34 1x4d_A Matrin 3; structural ge 99.8 3E-20 1E-24 126.5 9.6 76 169-245 13-91 (102)
35 1wex_A Hypothetical protein (r 99.8 6E-20 2.1E-24 125.8 11.1 77 168-245 12-90 (104)
36 1sjq_A Polypyrimidine tract-bi 99.8 2.3E-20 7.9E-25 127.1 8.8 76 169-245 14-91 (105)
37 3s8s_A Histone-lysine N-methyl 99.8 6.2E-20 2.1E-24 127.2 11.0 82 12-97 3-87 (110)
38 3s8s_A Histone-lysine N-methyl 99.8 9.4E-20 3.2E-24 126.3 11.8 77 169-245 4-85 (110)
39 2wbr_A GW182, gawky, LD47780P; 99.8 6.8E-20 2.3E-24 119.3 9.5 73 171-244 7-79 (89)
40 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-19 6.4E-24 121.5 12.1 76 169-244 14-94 (94)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.5E-19 5.2E-24 119.6 10.7 76 169-244 5-85 (85)
42 4f25_A Polyadenylate-binding p 99.8 1.1E-19 3.8E-24 127.2 10.6 74 171-244 5-81 (115)
43 2lkz_A RNA-binding protein 5; 99.8 9.5E-20 3.2E-24 122.7 9.0 73 172-244 10-93 (95)
44 2ad9_A Polypyrimidine tract-bi 99.8 1.4E-19 4.6E-24 126.3 10.0 77 168-245 28-106 (119)
45 2khc_A Testis-specific RNP-typ 99.8 6.4E-19 2.2E-23 123.9 13.6 78 167-244 36-118 (118)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-19 7.5E-24 118.8 10.2 80 11-94 3-85 (85)
47 1x4a_A Splicing factor, argini 99.8 3E-19 1E-23 123.9 11.3 85 9-97 16-100 (109)
48 2lxi_A RNA-binding protein 10; 99.8 2.1E-20 7.3E-25 125.3 5.3 80 15-98 1-85 (91)
49 2jrs_A RNA-binding protein 39; 99.8 2.8E-19 9.5E-24 123.7 11.1 86 8-97 19-107 (108)
50 2ytc_A PRE-mRNA-splicing facto 99.8 2.6E-19 8.9E-24 118.4 10.5 75 169-244 10-85 (85)
51 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.8E-19 6.1E-24 119.8 9.7 81 12-96 3-86 (87)
52 1wex_A Hypothetical protein (r 99.8 2.3E-19 7.8E-24 122.9 10.4 87 5-98 5-93 (104)
53 1x4f_A Matrin 3; structural ge 99.8 1.9E-19 6.4E-24 124.2 9.8 77 168-245 22-101 (112)
54 2cqc_A Arginine/serine-rich sp 99.8 4.7E-19 1.6E-23 119.7 11.7 76 169-244 13-93 (95)
55 2x1f_A MRNA 3'-END-processing 99.8 2.6E-19 8.8E-24 121.3 10.4 81 14-98 1-84 (96)
56 2wbr_A GW182, gawky, LD47780P; 99.8 1.7E-19 6E-24 117.3 8.8 76 12-94 4-79 (89)
57 1sjq_A Polypyrimidine tract-bi 99.8 1E-19 3.5E-24 123.9 7.9 82 10-98 11-94 (105)
58 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.7E-19 1.6E-23 117.7 10.9 77 169-245 4-85 (87)
59 2lxi_A RNA-binding protein 10; 99.8 4E-20 1.4E-24 123.9 5.7 74 171-244 1-81 (91)
60 2cqi_A Nucleolysin TIAR; RNA r 99.8 8.5E-19 2.9E-23 120.3 12.5 76 169-244 13-91 (103)
61 2e5h_A Zinc finger CCHC-type a 99.8 3.1E-19 1.1E-23 120.4 10.1 83 8-94 9-94 (94)
62 3md1_A Nuclear and cytoplasmic 99.8 4.1E-19 1.4E-23 116.9 10.4 78 15-96 1-81 (83)
63 1whw_A Hypothetical protein ri 99.8 4E-19 1.4E-23 121.0 10.6 85 10-98 3-90 (99)
64 2cqc_A Arginine/serine-rich sp 99.8 3.3E-19 1.1E-23 120.5 10.0 85 7-95 7-94 (95)
65 2d9p_A Polyadenylate-binding p 99.8 4.5E-19 1.5E-23 121.7 10.8 89 6-98 6-95 (103)
66 2cq3_A RNA-binding protein 9; 99.8 1.7E-18 5.7E-23 118.8 13.6 76 169-244 13-91 (103)
67 2dgs_A DAZ-associated protein 99.8 5.6E-19 1.9E-23 120.3 11.2 86 8-98 3-91 (99)
68 3md1_A Nuclear and cytoplasmic 99.8 7.2E-19 2.5E-23 115.8 11.2 74 172-245 2-80 (83)
69 2dnz_A Probable RNA-binding pr 99.8 6E-19 2.1E-23 119.2 11.0 83 12-98 2-87 (95)
70 1why_A Hypothetical protein ri 99.8 8.8E-19 3E-23 118.9 11.8 75 169-244 15-91 (97)
71 2cpj_A Non-POU domain-containi 99.8 6.7E-19 2.3E-23 119.9 11.2 76 169-245 13-88 (99)
72 2cq1_A PTB-like protein L; RRM 99.8 5.8E-19 2E-23 120.1 10.7 84 8-98 8-93 (101)
73 2do4_A Squamous cell carcinoma 99.8 7E-19 2.4E-23 120.0 11.2 84 10-97 12-97 (100)
74 1x5u_A Splicing factor 3B subu 99.8 5.8E-19 2E-23 121.6 10.8 87 8-98 8-97 (105)
75 1x5s_A Cold-inducible RNA-bind 99.8 3.5E-19 1.2E-23 122.0 9.6 88 7-98 4-94 (102)
76 2cq0_A Eukaryotic translation 99.8 1E-18 3.4E-23 119.9 12.0 77 169-245 13-94 (103)
77 2do4_A Squamous cell carcinoma 99.8 1.4E-18 4.7E-23 118.6 12.5 76 169-244 15-94 (100)
78 2err_A Ataxin-2-binding protei 99.8 4.8E-19 1.6E-23 122.8 10.3 78 168-245 26-106 (109)
79 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.2E-19 1.8E-23 121.3 10.3 88 7-98 7-95 (103)
80 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3E-19 1E-23 122.3 9.1 88 7-98 4-94 (102)
81 2x1f_A MRNA 3'-END-processing 99.8 8.3E-19 2.8E-23 118.8 11.1 76 170-245 1-81 (96)
82 2dnm_A SRP46 splicing factor; 99.8 4.7E-19 1.6E-23 121.6 9.9 87 8-98 6-95 (103)
83 3ns6_A Eukaryotic translation 99.8 2E-19 7E-24 122.7 7.9 83 12-98 3-95 (100)
84 2dgx_A KIAA0430 protein; RRM d 99.8 8.4E-19 2.9E-23 118.7 10.7 75 170-244 8-88 (96)
85 2dgv_A HnRNP M, heterogeneous 99.8 6.1E-19 2.1E-23 118.4 10.0 83 11-97 4-87 (92)
86 2la6_A RNA-binding protein FUS 99.8 1.1E-18 3.7E-23 118.9 11.3 76 169-244 11-99 (99)
87 2cph_A RNA binding motif prote 99.8 1.1E-18 3.6E-23 120.6 11.3 87 8-98 8-99 (107)
88 2la6_A RNA-binding protein FUS 99.8 9.3E-19 3.2E-23 119.2 10.8 83 8-94 6-99 (99)
89 2cq0_A Eukaryotic translation 99.8 7E-19 2.4E-23 120.7 10.3 87 8-98 8-97 (103)
90 2ywk_A Putative RNA-binding pr 99.8 7.6E-19 2.6E-23 118.7 10.3 76 169-244 14-93 (95)
91 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-18 6.6E-23 120.9 12.7 77 169-245 13-94 (115)
92 2dnz_A Probable RNA-binding pr 99.8 1.2E-18 4E-23 117.7 11.2 77 169-245 3-84 (95)
93 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-18 4E-23 122.0 11.4 77 169-245 23-104 (115)
94 1x5u_A Splicing factor 3B subu 99.8 1.3E-18 4.6E-23 119.7 11.5 76 169-244 13-93 (105)
95 1x4a_A Splicing factor, argini 99.8 2.2E-18 7.6E-23 119.4 12.7 76 169-244 20-97 (109)
96 1whw_A Hypothetical protein ri 99.8 1.3E-18 4.5E-23 118.4 11.3 77 169-245 6-87 (99)
97 2dnh_A Bruno-like 5, RNA bindi 99.8 1.4E-18 4.8E-23 119.6 11.5 85 10-98 10-99 (105)
98 1p27_B RNA-binding protein 8A; 99.8 9.1E-19 3.1E-23 120.8 10.5 82 11-96 19-103 (106)
99 2cph_A RNA binding motif prote 99.8 1.6E-18 5.6E-23 119.7 11.8 77 169-245 13-96 (107)
100 2dnh_A Bruno-like 5, RNA bindi 99.8 2.2E-18 7.7E-23 118.6 12.4 76 169-244 13-95 (105)
101 2ad9_A Polypyrimidine tract-bi 99.8 5.4E-19 1.9E-23 123.3 9.2 83 9-98 25-109 (119)
102 2hvz_A Splicing factor, argini 99.8 1.9E-19 6.6E-24 123.1 6.9 76 16-97 1-76 (101)
103 1x4d_A Matrin 3; structural ge 99.8 4.8E-19 1.6E-23 120.5 8.7 81 11-98 11-94 (102)
104 2cpf_A RNA binding motif prote 99.8 4.9E-19 1.7E-23 120.4 8.7 82 13-98 3-90 (98)
105 2cq3_A RNA-binding protein 9; 99.8 1.5E-18 5.2E-23 119.0 11.0 87 8-98 8-95 (103)
106 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-18 4.7E-23 121.7 10.9 87 8-98 8-97 (115)
107 1whx_A Hypothetical protein ri 99.8 6.9E-19 2.4E-23 122.3 9.2 75 170-245 9-83 (111)
108 2xnq_A Nuclear polyadenylated 99.8 2.2E-18 7.6E-23 116.8 11.5 75 168-245 19-94 (97)
109 1x4h_A RNA-binding protein 28; 99.8 1.3E-18 4.6E-23 120.9 10.6 86 9-98 9-103 (111)
110 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-18 4.2E-23 119.3 10.2 77 169-245 10-91 (102)
111 2jrs_A RNA-binding protein 39; 99.8 1.8E-18 6E-23 119.6 10.8 77 169-245 24-105 (108)
112 2dnq_A RNA-binding protein 4B; 99.8 1.9E-18 6.5E-23 115.6 10.7 74 169-245 6-79 (90)
113 2cpz_A CUG triplet repeat RNA- 99.8 9.5E-19 3.2E-23 122.5 9.6 86 9-98 19-107 (115)
114 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-18 4.3E-23 119.2 9.9 76 169-244 10-90 (102)
115 2dnm_A SRP46 splicing factor; 99.8 1.5E-18 5.2E-23 119.0 10.3 76 169-244 11-91 (103)
116 2ywk_A Putative RNA-binding pr 99.8 9.5E-19 3.3E-23 118.2 9.2 82 10-95 11-94 (95)
117 2fy1_A RNA-binding motif prote 99.8 8.4E-19 2.9E-23 122.8 9.1 84 11-98 3-88 (116)
118 2la4_A Nuclear and cytoplasmic 99.8 2.1E-19 7.1E-24 122.9 5.8 76 169-245 25-100 (101)
119 2jvo_A Nucleolar protein 3; nu 99.8 1.5E-18 5.2E-23 119.9 10.2 73 169-244 29-101 (108)
120 2dgs_A DAZ-associated protein 99.8 3.3E-18 1.1E-22 116.4 11.7 75 169-244 8-87 (99)
121 2div_A TRNA selenocysteine ass 99.8 7.3E-19 2.5E-23 119.7 8.4 85 8-96 2-94 (99)
122 3ulh_A THO complex subunit 4; 99.8 1.6E-18 5.4E-23 119.8 10.2 82 9-94 23-106 (107)
123 2d9p_A Polyadenylate-binding p 99.8 3E-18 1E-22 117.5 11.6 76 169-244 13-91 (103)
124 1why_A Hypothetical protein ri 99.8 2.2E-18 7.6E-23 116.9 10.7 82 9-97 11-94 (97)
125 2lea_A Serine/arginine-rich sp 99.8 1.3E-19 4.6E-24 130.3 4.8 75 170-244 46-125 (135)
126 2err_A Ataxin-2-binding protei 99.8 7.3E-19 2.5E-23 121.8 8.4 86 7-96 21-107 (109)
127 1oo0_B CG8781-PA, drosophila Y 99.8 1.6E-18 5.6E-23 120.3 10.2 84 10-97 21-107 (110)
128 2a3j_A U1 small nuclear ribonu 99.8 1.4E-18 4.7E-23 123.2 9.9 77 169-245 27-109 (127)
129 2dgv_A HnRNP M, heterogeneous 99.8 2E-18 6.9E-23 115.9 10.2 77 169-245 6-85 (92)
130 2fc8_A NCL protein; structure 99.8 2E-18 6.8E-23 118.2 10.3 87 8-98 8-94 (102)
131 2dgp_A Bruno-like 4, RNA bindi 99.8 1.5E-18 5.2E-23 119.6 9.6 87 8-98 6-98 (106)
132 2kxn_B Transformer-2 protein h 99.8 1.2E-18 4E-23 124.3 9.3 85 9-97 40-127 (129)
133 2xnq_A Nuclear polyadenylated 99.8 2.5E-18 8.4E-23 116.6 10.4 81 7-96 14-95 (97)
134 2dnq_A RNA-binding protein 4B; 99.8 1.5E-18 5.2E-23 116.0 9.2 80 10-98 3-82 (90)
135 1x4c_A Splicing factor, argini 99.8 5.1E-18 1.8E-22 117.4 12.1 73 170-244 14-91 (108)
136 3s7r_A Heterogeneous nuclear r 99.8 2.2E-18 7.6E-23 114.4 9.9 81 8-93 4-87 (87)
137 2lkz_A RNA-binding protein 5; 99.8 1.2E-18 4E-23 117.3 8.6 80 12-95 6-94 (95)
138 3ulh_A THO complex subunit 4; 99.8 4.4E-18 1.5E-22 117.5 11.8 76 169-244 27-106 (107)
139 1x4g_A Nucleolysin TIAR; struc 99.8 2.1E-18 7.3E-23 119.5 10.2 76 169-245 23-98 (109)
140 2do0_A HnRNP M, heterogeneous 99.8 7.1E-18 2.4E-22 117.8 13.0 76 169-244 13-92 (114)
141 1x5t_A Splicing factor 3B subu 99.8 1.6E-18 5.3E-23 117.4 9.2 75 170-244 4-84 (96)
142 1oo0_B CG8781-PA, drosophila Y 99.8 3.2E-18 1.1E-22 118.8 11.0 76 169-244 24-104 (110)
143 1x5t_A Splicing factor 3B subu 99.8 6E-19 2.1E-23 119.4 7.1 82 13-98 3-88 (96)
144 1p27_B RNA-binding protein 8A; 99.8 2.7E-18 9.3E-23 118.4 10.5 76 169-244 21-101 (106)
145 2fc9_A NCL protein; structure 99.8 1.5E-18 5E-23 118.7 9.0 85 8-97 8-92 (101)
146 3zzy_A Polypyrimidine tract-bi 99.8 2.9E-18 9.9E-23 121.1 10.7 72 173-244 30-104 (130)
147 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3E-18 1E-22 127.6 11.4 76 169-244 70-150 (165)
148 1wi8_A EIF-4B, eukaryotic tran 99.8 2.6E-18 8.8E-23 118.1 10.2 83 10-98 10-96 (104)
149 2cpf_A RNA binding motif prote 99.8 2.6E-18 8.8E-23 116.8 10.1 76 170-245 4-87 (98)
150 2kxn_B Transformer-2 protein h 99.8 1.7E-18 5.9E-23 123.4 9.4 76 169-244 44-124 (129)
151 3p5t_L Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 119.1 5.5 79 16-98 2-85 (90)
152 2cpi_A CCR4-NOT transcription 99.8 1.6E-18 5.4E-23 120.5 8.8 84 10-97 10-102 (111)
153 2do0_A HnRNP M, heterogeneous 99.8 4.6E-18 1.6E-22 118.8 11.2 84 9-96 9-94 (114)
154 3tyt_A Heterogeneous nuclear r 99.8 2.8E-18 9.7E-23 132.1 11.1 76 169-244 2-78 (205)
155 2cpi_A CCR4-NOT transcription 99.8 2.5E-18 8.5E-23 119.5 9.7 76 169-244 13-99 (111)
156 4a8x_A RNA-binding protein wit 99.8 4.8E-18 1.6E-22 113.0 10.8 74 171-244 4-83 (88)
157 1x4f_A Matrin 3; structural ge 99.8 1E-18 3.5E-23 120.5 7.6 82 10-98 20-104 (112)
158 2jvr_A Nucleolar protein 3; RN 99.8 2E-18 6.9E-23 119.4 9.1 75 170-244 27-103 (111)
159 2dgt_A RNA-binding protein 30; 99.8 7.1E-18 2.4E-22 113.2 11.6 73 169-244 8-80 (92)
160 1x4h_A RNA-binding protein 28; 99.8 6.6E-18 2.2E-22 117.4 11.8 76 169-244 13-99 (111)
161 2khc_A Testis-specific RNP-typ 99.8 1.8E-18 6.3E-23 121.6 9.1 81 10-94 35-118 (118)
162 1s79_A Lupus LA protein; RRM, 99.8 1.4E-18 4.8E-23 118.9 8.2 82 10-96 6-89 (103)
163 2dhg_A TRNA selenocysteine ass 99.8 1.8E-18 6E-23 118.9 8.7 86 9-98 3-92 (104)
164 2cq2_A Hypothetical protein LO 99.8 1.7E-18 6E-23 119.5 8.7 76 169-245 23-105 (114)
165 3ns6_A Eukaryotic translation 99.8 9.9E-19 3.4E-23 119.2 7.4 75 170-244 5-91 (100)
166 2cqp_A RNA-binding protein 12; 99.8 2.5E-18 8.6E-23 116.8 9.4 76 169-244 13-93 (98)
167 4a8x_A RNA-binding protein wit 99.8 2.4E-18 8.3E-23 114.5 9.1 80 13-96 2-85 (88)
168 2nlw_A Eukaryotic translation 99.8 1.9E-18 6.5E-23 118.9 8.8 81 12-96 12-100 (105)
169 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-17 3.7E-22 113.9 12.5 74 169-245 13-88 (99)
170 2ytc_A PRE-mRNA-splicing facto 99.8 2.4E-18 8.1E-23 113.8 8.8 80 8-94 5-85 (85)
171 2cpe_A RNA-binding protein EWS 99.8 6.1E-18 2.1E-22 118.0 11.2 77 169-245 13-102 (113)
172 2cpj_A Non-POU domain-containi 99.8 2.6E-18 9E-23 116.9 9.1 84 8-98 8-91 (99)
173 3lqv_A PRE-mRNA branch site pr 99.8 5.5E-18 1.9E-22 118.6 10.8 76 169-244 6-83 (115)
174 2fy1_A RNA-binding motif prote 99.8 4.1E-18 1.4E-22 119.3 10.1 76 170-245 6-85 (116)
175 2jvr_A Nucleolar protein 3; RN 99.8 1.7E-18 5.7E-23 119.8 7.9 82 10-96 23-105 (111)
176 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.6E-18 5.3E-23 118.3 7.7 83 8-96 12-98 (100)
177 2dng_A Eukaryotic translation 99.8 1.2E-17 4.2E-22 114.4 12.2 74 169-244 13-91 (103)
178 2krb_A Eukaryotic translation 99.8 1E-18 3.5E-23 114.5 6.4 72 15-90 1-80 (81)
179 2dgp_A Bruno-like 4, RNA bindi 99.8 4.7E-18 1.6E-22 117.2 10.1 76 169-244 11-94 (106)
180 2cpe_A RNA-binding protein EWS 99.8 3E-18 1E-22 119.6 9.2 85 10-98 10-105 (113)
181 2e5j_A Methenyltetrahydrofolat 99.8 5.2E-18 1.8E-22 115.0 10.1 76 169-245 17-93 (97)
182 1p1t_A Cleavage stimulation fa 99.8 1E-18 3.5E-23 120.1 6.7 82 13-98 6-90 (104)
183 1u6f_A Tcubp1, RNA-binding pro 99.8 1.9E-17 6.7E-22 119.7 13.8 77 169-245 40-121 (139)
184 2div_A TRNA selenocysteine ass 99.8 3.5E-18 1.2E-22 116.3 9.3 76 169-244 7-92 (99)
185 3ucg_A Polyadenylate-binding p 99.8 5.4E-18 1.8E-22 113.0 9.9 73 171-244 6-83 (89)
186 2cqd_A RNA-binding region cont 99.8 1.2E-17 4E-22 117.1 12.0 76 168-244 14-94 (116)
187 1wf1_A RNA-binding protein RAL 99.8 1.3E-17 4.5E-22 115.7 12.1 73 169-244 25-98 (110)
188 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-17 4E-22 114.7 11.8 74 169-244 13-92 (104)
189 2kvi_A Nuclear polyadenylated 99.8 2E-18 7E-23 116.8 7.7 82 8-98 3-85 (96)
190 1nu4_A U1A RNA binding domain; 99.8 3.6E-18 1.2E-22 115.8 8.9 77 169-245 6-88 (97)
191 1fjc_A Nucleolin RBD2, protein 99.8 1.6E-18 5.6E-23 117.3 7.1 82 10-97 11-92 (96)
192 2dnp_A RNA-binding protein 14; 99.8 7.2E-18 2.5E-22 112.7 10.1 74 169-245 7-80 (90)
193 2dng_A Eukaryotic translation 99.8 6.1E-18 2.1E-22 116.0 10.0 84 9-98 9-95 (103)
194 3p5t_L Cleavage and polyadenyl 99.8 9.3E-19 3.2E-23 117.1 5.7 73 172-244 2-81 (90)
195 3ex7_B RNA-binding protein 8A; 99.8 5.9E-18 2E-22 120.4 10.2 85 10-98 17-104 (126)
196 2dgu_A Heterogeneous nuclear r 99.8 7E-18 2.4E-22 115.7 10.2 73 169-244 9-81 (103)
197 1x4e_A RNA binding motif, sing 99.8 9.8E-19 3.4E-23 115.7 5.7 79 12-94 2-83 (85)
198 2cq4_A RNA binding motif prote 99.8 5.7E-18 1.9E-22 118.3 9.8 74 170-244 24-102 (114)
199 1u6f_A Tcubp1, RNA-binding pro 99.8 7.3E-18 2.5E-22 122.0 10.7 85 10-98 37-124 (139)
200 2kt5_A RNA and export factor-b 99.8 6.5E-18 2.2E-22 119.8 10.2 85 9-97 29-115 (124)
201 1s79_A Lupus LA protein; RRM, 99.8 3.2E-18 1.1E-22 117.1 8.3 74 170-244 10-87 (103)
202 2cqp_A RNA-binding protein 12; 99.7 8.3E-18 2.8E-22 114.2 10.2 84 9-96 9-95 (98)
203 3ex7_B RNA-binding protein 8A; 99.7 6.3E-18 2.2E-22 120.2 10.0 76 169-244 20-100 (126)
204 2hvz_A Splicing factor, argini 99.7 2.1E-18 7.1E-23 117.9 7.2 73 172-244 1-73 (101)
205 1x4g_A Nucleolysin TIAR; struc 99.7 4.2E-18 1.4E-22 118.0 8.8 81 11-98 21-101 (109)
206 2kvi_A Nuclear polyadenylated 99.7 4.8E-18 1.6E-22 115.0 8.8 73 169-244 8-81 (96)
207 2cqd_A RNA-binding region cont 99.7 7.1E-18 2.4E-22 118.2 9.9 84 8-96 10-96 (116)
208 1whx_A Hypothetical protein ri 99.7 3.2E-18 1.1E-22 118.9 8.0 78 12-96 7-84 (111)
209 2diu_A KIAA0430 protein; struc 99.7 7.3E-18 2.5E-22 110.7 9.0 72 169-245 6-83 (96)
210 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-17 5.4E-22 120.3 11.8 75 169-243 61-140 (140)
211 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2E-18 6.9E-23 117.7 6.6 75 169-245 17-97 (100)
212 2cpx_A Hypothetical protein FL 99.7 2.9E-18 9.8E-23 120.0 7.6 84 10-98 20-107 (115)
213 2ek1_A RNA-binding protein 12; 99.7 2.6E-18 8.8E-23 116.1 7.1 76 169-244 13-93 (95)
214 2dnp_A RNA-binding protein 14; 99.7 8.1E-18 2.8E-22 112.5 9.3 80 9-97 3-82 (90)
215 2jvo_A Nucleolar protein 3; nu 99.7 4.6E-18 1.6E-22 117.5 8.4 80 10-98 26-105 (108)
216 2cpy_A RNA-binding protein 12; 99.7 6.8E-18 2.3E-22 117.9 9.3 89 6-99 6-97 (114)
217 2cpd_A Apobec-1 stimulating pr 99.7 1.3E-17 4.4E-22 113.5 10.5 87 3-98 3-91 (99)
218 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 8.4E-18 2.9E-22 121.7 10.1 81 9-93 57-140 (140)
219 1x5o_A RNA binding motif, sing 99.7 2.1E-17 7.2E-22 115.4 11.8 83 10-96 20-112 (114)
220 3ucg_A Polyadenylate-binding p 99.7 5.8E-18 2E-22 112.9 8.5 78 14-96 5-85 (89)
221 3s7r_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 110.2 10.7 74 169-243 9-87 (87)
222 1x4c_A Splicing factor, argini 99.7 1.2E-17 4.3E-22 115.4 10.5 82 9-98 9-95 (108)
223 3n9u_C Cleavage and polyadenyl 99.7 6.2E-18 2.1E-22 124.4 9.4 81 14-98 54-139 (156)
224 2ek1_A RNA-binding protein 12; 99.7 3E-18 1E-22 115.7 7.2 81 10-94 10-93 (95)
225 2la4_A Nuclear and cytoplasmic 99.7 2.4E-18 8.4E-23 117.5 6.8 78 11-95 23-100 (101)
226 2e5j_A Methenyltetrahydrofolat 99.7 3.2E-18 1.1E-22 116.0 7.3 82 10-97 14-95 (97)
227 2dgt_A RNA-binding protein 30; 99.7 1.2E-17 4.3E-22 112.0 9.8 82 8-98 3-84 (92)
228 2dh8_A DAZ-associated protein 99.7 3E-18 1E-22 117.9 7.0 86 8-98 9-97 (105)
229 2dhg_A TRNA selenocysteine ass 99.7 6.2E-18 2.1E-22 116.1 8.5 76 169-244 7-88 (104)
230 3zzy_A Polypyrimidine tract-bi 99.7 4.2E-18 1.4E-22 120.2 7.7 80 13-98 26-108 (130)
231 2e5i_A Heterogeneous nuclear r 99.7 5.7E-17 1.9E-21 113.9 13.4 75 169-244 21-100 (124)
232 2rs2_A Musashi-1, RNA-binding 99.7 6.5E-18 2.2E-22 117.0 8.6 84 9-97 19-105 (109)
233 2dgu_A Heterogeneous nuclear r 99.7 1.2E-17 4.1E-22 114.5 9.8 80 10-98 6-85 (103)
234 2dgw_A Probable RNA-binding pr 99.7 1E-17 3.5E-22 112.2 9.2 83 9-97 4-88 (91)
235 3n9u_C Cleavage and polyadenyl 99.7 1.3E-17 4.4E-22 122.7 10.6 75 170-244 54-135 (156)
236 2kt5_A RNA and export factor-b 99.7 9.3E-17 3.2E-21 113.8 14.6 76 169-244 33-112 (124)
237 1p1t_A Cleavage stimulation fa 99.7 6.2E-18 2.1E-22 116.1 8.0 75 170-244 7-86 (104)
238 1wg5_A Heterogeneous nuclear r 99.7 1.7E-17 5.8E-22 113.9 10.2 83 9-96 9-94 (104)
239 2i2y_A Fusion protein consists 99.7 1.5E-17 5E-22 121.9 10.5 82 9-96 67-148 (150)
240 2dh8_A DAZ-associated protein 99.7 9.7E-18 3.3E-22 115.4 9.0 76 168-244 13-93 (105)
241 1x5p_A Negative elongation fac 99.7 4.8E-17 1.6E-21 110.2 12.2 73 169-244 13-85 (97)
242 2m2b_A RNA-binding protein 10; 99.7 2.2E-18 7.6E-23 123.4 5.9 83 11-98 19-110 (131)
243 1x4e_A RNA binding motif, sing 99.7 2.1E-18 7.2E-23 114.0 5.3 76 169-244 3-83 (85)
244 3egn_A RNA-binding protein 40; 99.7 3E-18 1E-22 124.6 6.6 84 10-97 40-131 (143)
245 2dgw_A Probable RNA-binding pr 99.7 3.5E-17 1.2E-21 109.6 11.2 75 169-245 8-86 (91)
246 2dis_A Unnamed protein product 99.7 1.1E-17 3.7E-22 115.9 9.0 83 12-98 5-94 (109)
247 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.9E-17 9.9E-22 121.1 11.8 76 169-244 37-117 (156)
248 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.9E-17 6.7E-22 122.1 10.8 84 11-98 35-121 (156)
249 2e44_A Insulin-like growth fac 99.7 2.3E-17 7.7E-22 111.6 10.2 75 170-244 14-90 (96)
250 2mss_A Protein (musashi1); RNA 99.7 4.4E-18 1.5E-22 109.8 6.2 72 17-93 1-75 (75)
251 1x4b_A Heterogeneous nuclear r 99.7 1.5E-17 5.3E-22 116.5 9.5 74 170-244 26-104 (116)
252 2kn4_A Immunoglobulin G-bindin 99.7 1.8E-17 6E-22 122.6 10.2 83 11-97 66-151 (158)
253 2nlw_A Eukaryotic translation 99.7 1.1E-17 3.9E-22 115.0 8.5 75 170-244 14-98 (105)
254 1wel_A RNA-binding protein 12; 99.7 1.1E-17 3.6E-22 118.7 8.6 84 10-98 20-106 (124)
255 2fc9_A NCL protein; structure 99.7 4.2E-17 1.4E-21 111.3 11.3 73 169-244 13-89 (101)
256 2rs2_A Musashi-1, RNA-binding 99.7 1.9E-17 6.4E-22 114.7 9.4 75 169-244 23-102 (109)
257 2cqg_A TDP-43, TAR DNA-binding 99.7 3.3E-17 1.1E-21 112.3 10.5 84 9-98 9-95 (103)
258 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.6E-22 116.9 8.0 80 14-98 24-106 (114)
259 2mss_A Protein (musashi1); RNA 99.7 6.7E-18 2.3E-22 108.9 6.5 70 173-243 1-75 (75)
260 2cqh_A IGF-II mRNA-binding pro 99.7 1E-17 3.4E-22 112.7 7.6 73 170-244 7-81 (93)
261 1wg1_A KIAA1579 protein, homol 99.7 1.8E-17 6E-22 110.3 8.7 74 170-245 4-77 (88)
262 2m2b_A RNA-binding protein 10; 99.7 8.5E-18 2.9E-22 120.3 7.7 75 169-244 21-106 (131)
263 1sjr_A Polypyrimidine tract-bi 99.7 1.4E-17 4.7E-22 121.9 8.8 82 12-98 43-126 (164)
264 1sjr_A Polypyrimidine tract-bi 99.7 2.6E-17 8.8E-22 120.5 10.2 73 172-244 47-122 (164)
265 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.9E-17 1E-21 122.2 10.8 84 11-98 68-154 (165)
266 2lea_A Serine/arginine-rich sp 99.7 5.9E-18 2E-22 121.7 6.8 86 9-98 41-129 (135)
267 1x5o_A RNA binding motif, sing 99.7 1.3E-16 4.5E-21 111.3 13.3 76 169-244 23-110 (114)
268 3pgw_S U1-70K; protein-RNA com 99.7 1.4E-17 4.8E-22 141.8 10.0 75 170-244 101-180 (437)
269 2cpx_A Hypothetical protein FL 99.7 2.3E-17 8E-22 115.3 9.4 76 169-244 23-103 (115)
270 2cpy_A RNA-binding protein 12; 99.7 2.6E-17 9.1E-22 114.9 9.6 75 169-244 13-92 (114)
271 2cqh_A IGF-II mRNA-binding pro 99.7 7.1E-18 2.4E-22 113.4 6.5 80 11-98 4-85 (93)
272 2db1_A Heterogeneous nuclear r 99.7 2.4E-17 8.2E-22 115.7 9.3 75 169-244 15-96 (118)
273 1wez_A HnRNP H', FTP-3, hetero 99.7 1.7E-17 5.7E-22 113.4 8.2 83 9-97 9-93 (102)
274 1wf1_A RNA-binding protein RAL 99.7 1.9E-17 6.4E-22 114.9 8.4 77 11-96 23-100 (110)
275 2ki2_A SS-DNA binding protein 99.7 2.7E-18 9.2E-23 114.8 3.9 78 16-98 2-82 (90)
276 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.1E-18 2.1E-22 109.6 5.5 73 16-93 1-76 (77)
277 1wg5_A Heterogeneous nuclear r 99.7 6.4E-17 2.2E-21 111.0 10.8 76 169-245 13-93 (104)
278 2e5i_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 114.1 10.3 79 13-98 21-104 (124)
279 2e44_A Insulin-like growth fac 99.7 4.9E-17 1.7E-21 109.9 9.9 84 8-96 8-92 (96)
280 2cq2_A Hypothetical protein LO 99.7 2.4E-17 8.2E-22 113.8 8.3 80 11-97 21-107 (114)
281 2db1_A Heterogeneous nuclear r 99.7 1.5E-17 5.1E-22 116.8 7.4 83 10-97 12-99 (118)
282 2hgl_A HNRPF protein, heteroge 99.7 1.1E-17 3.9E-22 119.8 6.8 85 9-98 38-127 (136)
283 2cqg_A TDP-43, TAR DNA-binding 99.7 1.3E-16 4.4E-21 109.3 11.7 74 169-244 13-91 (103)
284 3d2w_A TAR DNA-binding protein 99.7 7.2E-17 2.5E-21 107.5 10.1 72 169-244 9-82 (89)
285 2jwn_A Embryonic polyadenylate 99.7 3.2E-17 1.1E-21 116.2 8.9 74 170-244 35-113 (124)
286 2fc8_A NCL protein; structure 99.7 8.7E-17 3E-21 109.9 10.8 73 169-244 13-90 (102)
287 2krb_A Eukaryotic translation 99.7 1.1E-17 3.8E-22 109.5 5.9 69 172-240 2-80 (81)
288 2dis_A Unnamed protein product 99.7 3.7E-17 1.3E-21 113.2 8.9 76 169-244 6-90 (109)
289 1fj7_A Nucleolin RBD1, protein 99.7 3.6E-18 1.2E-22 116.7 3.6 82 11-97 13-96 (101)
290 2dnn_A RNA-binding protein 12; 99.7 7E-17 2.4E-21 111.4 10.1 73 170-244 15-91 (109)
291 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.4E-17 4.9E-22 107.9 6.0 70 173-243 2-76 (77)
292 1wel_A RNA-binding protein 12; 99.7 2.3E-17 7.9E-22 116.9 7.6 75 169-244 23-102 (124)
293 2jwn_A Embryonic polyadenylate 99.7 3.4E-17 1.2E-21 116.1 8.5 79 14-97 35-116 (124)
294 1wg1_A KIAA1579 protein, homol 99.7 3E-17 1E-21 109.2 7.3 78 13-98 3-80 (88)
295 2ki2_A SS-DNA binding protein 99.7 7.3E-18 2.5E-22 112.7 4.3 72 172-244 2-78 (90)
296 1x5p_A Negative elongation fac 99.7 9.2E-17 3.2E-21 108.8 9.8 80 10-98 10-89 (97)
297 1wez_A HnRNP H', FTP-3, hetero 99.7 1E-16 3.4E-21 109.5 9.8 74 169-244 13-90 (102)
298 2hgl_A HNRPF protein, heteroge 99.7 4.9E-17 1.7E-21 116.5 8.4 75 169-244 42-123 (136)
299 2bz2_A Negative elongation fac 99.7 8.2E-17 2.8E-21 113.4 9.4 74 169-245 37-110 (121)
300 2lmi_A GRSF-1, G-rich sequence 99.7 2.1E-17 7.3E-22 114.0 6.3 85 9-98 5-94 (107)
301 1x4b_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 114.8 7.3 80 14-98 26-108 (116)
302 1fjc_A Nucleolin RBD2, protein 99.7 4.8E-17 1.6E-21 110.0 7.4 75 169-244 14-89 (96)
303 3d2w_A TAR DNA-binding protein 99.7 1.3E-16 4.3E-21 106.3 9.3 80 9-98 5-86 (89)
304 1iqt_A AUF1, heterogeneous nuc 99.7 1.9E-17 6.5E-22 106.7 5.0 72 17-93 1-75 (75)
305 4f02_A Polyadenylate-binding p 99.7 1.6E-16 5.4E-21 123.2 11.1 76 169-244 13-93 (213)
306 3egn_A RNA-binding protein 40; 99.7 8.5E-17 2.9E-21 116.9 8.7 76 169-244 43-128 (143)
307 2f3j_A RNA and export factor b 99.7 1.1E-16 3.8E-21 120.2 9.4 84 10-97 83-168 (177)
308 2lcw_A RNA-binding protein FUS 99.5 2.4E-18 8.1E-23 120.7 0.0 84 11-98 3-97 (116)
309 3beg_B Splicing factor, argini 99.7 8.1E-17 2.8E-21 112.5 7.6 73 170-244 15-92 (115)
310 3q2s_C Cleavage and polyadenyl 99.7 8.8E-17 3E-21 125.7 8.6 75 170-244 67-148 (229)
311 2dnn_A RNA-binding protein 12; 99.7 5.5E-17 1.9E-21 111.9 6.5 78 14-97 15-94 (109)
312 3beg_B Splicing factor, argini 99.7 1.6E-16 5.4E-21 111.0 8.8 75 13-95 14-93 (115)
313 3q2s_C Cleavage and polyadenyl 99.7 6.3E-17 2.1E-21 126.5 7.4 81 14-98 67-152 (229)
314 2hzc_A Splicing factor U2AF 65 99.7 2.3E-16 7.7E-21 104.6 9.0 71 170-242 5-86 (87)
315 2e5g_A U6 snRNA-specific termi 99.7 1.8E-16 6E-21 106.8 8.5 79 11-97 4-83 (94)
316 2f3j_A RNA and export factor b 99.7 2.3E-16 7.9E-21 118.4 10.0 76 169-244 86-165 (177)
317 1iqt_A AUF1, heterogeneous nuc 99.7 3.4E-17 1.1E-21 105.5 4.7 70 173-243 1-75 (75)
318 2dha_A FLJ20171 protein; RRM d 99.7 1E-16 3.6E-21 112.8 7.5 81 13-98 21-107 (123)
319 2pe8_A Splicing factor 45; RRM 99.7 5.8E-16 2E-20 106.0 11.0 76 169-244 6-92 (105)
320 1fj7_A Nucleolin RBD1, protein 99.7 4.2E-17 1.4E-21 111.3 5.2 73 170-244 16-93 (101)
321 2hgm_A HNRPF protein, heteroge 99.7 1E-16 3.5E-21 113.1 7.3 81 10-96 37-121 (126)
322 2hzc_A Splicing factor U2AF 65 99.7 1.4E-16 4.8E-21 105.6 7.6 73 12-92 3-86 (87)
323 3md3_A Nuclear and cytoplasmic 99.7 5.1E-16 1.8E-20 115.1 11.3 81 10-94 82-165 (166)
324 2lmi_A GRSF-1, G-rich sequence 99.7 6.9E-17 2.4E-21 111.4 6.0 74 170-244 10-90 (107)
325 2e5g_A U6 snRNA-specific termi 99.7 3.7E-16 1.3E-20 105.1 9.4 74 170-244 7-80 (94)
326 2adc_A Polypyrimidine tract-bi 99.7 2.2E-16 7.5E-21 123.7 9.4 77 168-244 31-108 (229)
327 2xs2_A Deleted in azoospermia- 99.7 4.5E-17 1.5E-21 111.4 4.8 81 12-98 6-88 (102)
328 1fxl_A Paraneoplastic encephal 99.7 7.4E-16 2.5E-20 114.4 11.2 74 171-244 2-80 (167)
329 2bz2_A Negative elongation fac 99.7 3E-16 1E-20 110.5 8.1 80 10-98 34-113 (121)
330 2lcw_A RNA-binding protein FUS 99.5 8.1E-18 2.8E-22 117.9 0.0 76 169-244 5-93 (116)
331 1b7f_A Protein (SXL-lethal pro 99.7 6.6E-16 2.2E-20 114.9 10.4 75 170-244 2-81 (168)
332 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-16 6.8E-21 105.1 6.3 73 170-244 4-76 (88)
333 3u1l_A PRE-mRNA-splicing facto 99.6 3E-16 1E-20 122.3 8.1 76 168-244 131-227 (240)
334 2pe8_A Splicing factor 45; RRM 99.6 9E-16 3.1E-20 105.1 9.5 81 12-96 5-94 (105)
335 1fje_B Nucleolin RBD12, protei 99.6 4.3E-16 1.5E-20 116.9 8.6 80 11-96 95-174 (175)
336 2xs2_A Deleted in azoospermia- 99.6 2.6E-16 8.9E-21 107.6 6.7 73 170-244 8-84 (102)
337 2hgn_A Heterogeneous nuclear r 99.6 8.7E-17 3E-21 115.6 4.4 82 11-98 42-125 (139)
338 2dit_A HIV TAT specific factor 99.6 3.6E-15 1.2E-19 103.6 11.6 76 169-244 13-100 (112)
339 2g4b_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 114.1 9.7 80 11-94 90-172 (172)
340 1qm9_A Polypyrimidine tract-bi 99.6 5.1E-16 1.8E-20 118.8 8.0 74 171-244 3-77 (198)
341 2hgm_A HNRPF protein, heteroge 99.6 5.3E-16 1.8E-20 109.4 7.4 73 170-244 41-119 (126)
342 2dnl_A Cytoplasmic polyadenyla 99.6 8.5E-16 2.9E-20 107.2 8.1 76 11-93 4-85 (114)
343 2hgn_A Heterogeneous nuclear r 99.6 1.6E-16 5.4E-21 114.2 4.4 73 170-244 45-121 (139)
344 2qfj_A FBP-interacting repress 99.6 1.8E-15 6.1E-20 117.2 10.8 82 13-98 123-207 (216)
345 2dha_A FLJ20171 protein; RRM d 99.6 4.5E-16 1.5E-20 109.5 6.6 74 170-244 22-103 (123)
346 1wf0_A TDP-43, TAR DNA-binding 99.6 2.8E-16 9.6E-21 104.4 5.1 78 13-98 3-80 (88)
347 3u1l_A PRE-mRNA-splicing facto 99.6 1.2E-15 4E-20 119.0 9.1 81 11-98 130-231 (240)
348 3pgw_S U1-70K; protein-RNA com 99.6 1.3E-15 4.4E-20 129.7 10.1 82 12-97 99-183 (437)
349 3nmr_A Cugbp ELAV-like family 99.6 2.5E-15 8.5E-20 112.5 10.3 79 12-94 92-175 (175)
350 3pgw_A U1-A; protein-RNA compl 99.6 3.4E-15 1.2E-19 120.5 11.8 77 168-244 6-88 (282)
351 2yh0_A Splicing factor U2AF 65 99.6 2E-15 6.8E-20 115.4 9.7 82 12-97 111-195 (198)
352 3v4m_A Splicing factor U2AF 65 99.6 3.7E-15 1.3E-19 102.1 9.2 76 169-244 3-95 (105)
353 2dit_A HIV TAT specific factor 99.6 3E-15 1E-19 104.0 8.7 88 9-97 9-103 (112)
354 2cjk_A Nuclear polyadenylated 99.6 1.1E-15 3.8E-20 113.6 6.9 78 14-96 86-166 (167)
355 3v4m_A Splicing factor U2AF 65 99.6 6.1E-15 2.1E-19 101.0 9.8 84 13-96 3-97 (105)
356 1l3k_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 113.5 9.6 82 12-98 101-185 (196)
357 3sde_A Paraspeckle component 1 99.6 7.9E-15 2.7E-19 117.1 11.6 75 169-244 20-94 (261)
358 2voo_A Lupus LA protein; RNA-b 99.6 5.1E-15 1.7E-19 112.7 9.2 77 15-96 109-187 (193)
359 2voo_A Lupus LA protein; RNA-b 99.6 9.5E-15 3.2E-19 111.2 10.3 75 170-245 108-186 (193)
360 2j8a_A Histone-lysine N-methyl 99.6 2.1E-15 7.1E-20 104.7 5.8 76 16-95 3-95 (136)
361 2j8a_A Histone-lysine N-methyl 99.6 4.6E-15 1.6E-19 103.0 7.3 73 172-244 3-94 (136)
362 2dnl_A Cytoplasmic polyadenyla 99.6 9.7E-15 3.3E-19 101.8 8.1 69 170-241 7-83 (114)
363 3s6e_A RNA-binding protein 39; 99.6 2.1E-14 7.2E-19 99.5 9.4 85 11-96 3-93 (114)
364 3ue2_A Poly(U)-binding-splicin 99.5 2.6E-14 8.9E-19 99.7 9.4 75 170-244 19-107 (118)
365 3ue2_A Poly(U)-binding-splicin 99.5 1.9E-14 6.5E-19 100.4 8.6 83 13-95 18-108 (118)
366 3s6e_A RNA-binding protein 39; 99.5 5.1E-14 1.7E-18 97.6 10.6 75 170-244 6-91 (114)
367 1jmt_A Splicing factor U2AF 35 99.5 1.1E-14 3.8E-19 99.5 5.6 74 20-93 20-103 (104)
368 1jmt_A Splicing factor U2AF 35 99.5 4.4E-14 1.5E-18 96.6 8.5 65 179-243 23-103 (104)
369 3tht_A Alkylated DNA repair pr 99.5 3.9E-14 1.3E-18 116.1 9.7 76 169-245 16-98 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.4E-13 4.8E-18 93.0 10.6 72 171-244 10-88 (100)
371 3tht_A Alkylated DNA repair pr 99.5 1.4E-13 4.9E-18 112.8 8.8 77 11-94 14-97 (345)
372 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.2E-12 4E-17 88.5 10.2 78 12-97 7-91 (100)
373 2dnr_A Synaptojanin-1; RRM dom 99.4 4.2E-12 1.5E-16 82.6 9.0 73 168-244 4-84 (91)
374 1owx_A Lupus LA protein, SS-B, 99.4 5.8E-12 2E-16 87.3 10.2 76 167-243 14-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.3 5.9E-12 2E-16 81.9 9.0 79 11-95 3-85 (91)
376 1owx_A Lupus LA protein, SS-B, 99.2 1.9E-10 6.4E-15 79.7 10.0 83 9-98 12-98 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.2 4.1E-11 1.4E-15 78.3 5.9 79 9-93 9-92 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.1 1.1E-10 3.8E-15 76.2 7.0 71 168-242 12-91 (95)
379 2l9w_A U4/U6 snRNA-associated- 99.0 2.3E-09 8E-14 71.4 8.4 70 171-241 21-95 (117)
380 3dxb_A Thioredoxin N-terminall 99.0 3.9E-09 1.3E-13 81.9 10.6 84 13-96 122-213 (222)
381 3dxb_A Thioredoxin N-terminall 99.0 3.2E-09 1.1E-13 82.4 9.4 73 171-243 124-210 (222)
382 1wey_A Calcipressin 1; structu 98.5 1.5E-07 5E-12 62.6 5.8 77 16-95 6-83 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.5 7.5E-07 2.6E-11 59.4 7.6 76 11-93 17-97 (117)
384 1wey_A Calcipressin 1; structu 98.3 1.7E-06 5.7E-11 57.5 6.6 72 172-244 6-82 (104)
385 1whv_A Poly(A)-specific ribonu 98.1 1.1E-05 3.6E-10 52.7 7.4 64 6-79 7-70 (100)
386 2dhx_A Poly (ADP-ribose) polym 98.1 3.4E-05 1.2E-09 51.0 9.9 73 12-94 5-82 (104)
387 1uw4_A UPF3X; nonsense mediate 98.0 4.5E-05 1.5E-09 49.8 8.5 62 173-234 3-71 (91)
388 2dhx_A Poly (ADP-ribose) polym 97.8 0.0003 1E-08 46.5 9.9 69 170-242 7-80 (104)
389 1uw4_A UPF3X; nonsense mediate 97.8 0.00012 3.9E-09 47.8 7.5 75 16-94 2-86 (91)
390 3ctr_A Poly(A)-specific ribonu 97.7 2.9E-05 1E-09 50.8 3.8 56 14-79 5-60 (101)
391 1wwh_A Nucleoporin 35, nucleop 97.6 0.00031 1.1E-08 47.9 7.6 76 12-96 21-97 (119)
392 1whv_A Poly(A)-specific ribonu 97.6 0.00075 2.6E-08 44.0 8.7 57 169-229 14-70 (100)
393 1wwh_A Nucleoporin 35, nucleop 97.4 0.00098 3.3E-08 45.5 8.5 69 171-242 24-93 (119)
394 2l08_A Regulator of nonsense t 97.4 0.00038 1.3E-08 45.7 5.6 64 171-234 9-79 (97)
395 3p3d_A Nucleoporin 53; structu 97.2 0.0004 1.4E-08 48.1 4.6 75 16-96 8-99 (132)
396 2l08_A Regulator of nonsense t 97.2 0.001 3.4E-08 43.6 6.1 76 15-94 9-94 (97)
397 3ctr_A Poly(A)-specific ribonu 97.2 0.00094 3.2E-08 43.7 5.7 55 171-229 6-60 (101)
398 3p3d_A Nucleoporin 53; structu 96.5 0.0036 1.2E-07 43.3 4.9 70 172-243 8-96 (132)
399 3pq1_A Poly(A) RNA polymerase; 96.3 0.0021 7.3E-08 54.5 3.4 54 172-226 54-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 96.1 0.0031 1E-07 53.6 3.0 56 14-76 52-107 (464)
401 3d45_A Poly(A)-specific ribonu 95.0 0.099 3.4E-06 45.1 8.6 59 12-80 437-495 (507)
402 3d45_A Poly(A)-specific ribonu 91.6 0.78 2.7E-05 39.6 8.5 56 171-230 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 91.0 0.35 1.2E-05 29.8 4.4 61 181-245 11-76 (76)
404 1xn9_A 30S ribosomal protein S 75.1 8.6 0.00029 25.1 5.6 49 25-74 28-80 (101)
405 4eyt_A Telomerase associated p 74.8 13 0.00046 23.5 7.9 56 170-228 11-66 (129)
406 1ywx_A 30S ribosomal protein S 74.1 9.9 0.00034 24.9 5.7 48 25-73 28-79 (102)
407 2v94_A RPS24, 30S ribosomal pr 71.5 12 0.00042 24.7 5.7 49 25-74 37-89 (107)
408 2g1d_A 30S ribosomal protein S 66.5 10 0.00036 24.6 4.5 48 25-73 29-80 (98)
409 2xzm_P RPS24E; ribosome, trans 60.9 28 0.00096 24.4 6.1 49 25-74 31-83 (149)
410 4e8u_A Putative uncharacterize 52.1 38 0.0013 24.4 5.7 47 173-219 14-73 (172)
411 4eyt_A Telomerase associated p 48.8 48 0.0016 20.9 7.8 75 12-95 9-90 (129)
412 3u5c_Y RP50, 40S ribosomal pro 46.5 40 0.0014 23.2 4.9 48 26-74 34-85 (135)
413 4e8u_A Putative uncharacterize 43.5 65 0.0022 23.2 5.8 55 18-76 15-81 (172)
414 3j21_T 50S ribosomal protein L 43.1 51 0.0017 20.7 4.7 52 22-75 29-80 (86)
415 1vd2_A Protein kinase C, IOTA 40.5 68 0.0023 20.3 7.2 57 18-79 17-75 (89)
416 1vq8_S 50S ribosomal protein L 39.5 41 0.0014 21.1 3.8 52 21-74 27-78 (85)
417 3ts2_A Protein LIN-28 homolog 33.8 7 0.00024 27.5 -0.5 28 186-216 2-29 (148)
418 2q2k_A Hypothetical protein; p 28.6 20 0.00067 20.2 0.9 26 19-44 42-67 (70)
419 3fry_A Probable copper-exporti 26.3 98 0.0033 17.7 6.0 58 172-232 7-64 (73)
420 2w7a_A LINE-1 ORF1P; RNA-bindi 25.6 1.4E+02 0.0048 19.3 5.8 78 14-91 2-98 (100)
421 3lpe_A Putative transcription 25.5 1.1E+02 0.0037 19.2 4.2 33 198-230 40-72 (92)
422 2e5p_A Protein PHF1, PHD finge 25.4 49 0.0017 19.6 2.2 21 43-68 27-47 (68)
423 2zkr_s 60S ribosomal protein L 23.1 1.5E+02 0.0051 20.9 4.8 51 23-75 100-150 (156)
424 3u5e_X 60S ribosomal protein L 21.8 1.9E+02 0.0066 20.0 5.0 48 23-74 86-135 (142)
425 3swz_A Steroid 17-alpha-hydrox 21.6 90 0.0031 26.0 4.2 64 16-86 15-78 (494)
426 2m0o_A PHD finger protein 1; t 21.1 67 0.0023 19.6 2.3 20 44-68 45-64 (79)
427 4a17_R RPL23A, 60S ribosomal p 20.7 1.9E+02 0.0067 20.2 4.9 49 23-75 94-144 (150)
428 2eqj_A Metal-response element- 20.1 73 0.0025 18.9 2.2 19 44-67 32-50 (66)
No 1
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.1e-39 Score=264.63 Aligned_cols=238 Identities=50% Similarity=0.810 Sum_probs=170.0
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
+..+..++++|||+|||.++++++|++.|+++|+.||.|.+|++.++++++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 2 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 2 AVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCC-------Ccc----------------ccCCC
Q 025973 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL-------NPA----------------YAGAY 144 (245)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------------~~~~~ 144 (245)
|+|.|+...........+.+............................. ... .....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 9999998776544444443332222111111100000000000000000 000 00000
Q ss_pred CCCCCCCCCCCCCCC-------------------CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEec
Q 025973 145 GATPPLSQIPYPGGA-------------------KSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205 (245)
Q Consensus 145 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~ 205 (245)
+.+.+....+.+... .........+++++|||+|||..+++++|+++|+.||.|.+|+++.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 000000000000000 0001123345678899999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEecC
Q 025973 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245 (245)
Q Consensus 206 ~~~g~afv~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~ak~ 245 (245)
+++|+|||+|.+.++|.+|+..|||..|+ |++|+|+||||
T Consensus 242 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 242 GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 88899999999999999999999999999 99999999997
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.4e-37 Score=238.19 Aligned_cols=167 Identities=22% Similarity=0.344 Sum_probs=143.3
Q ss_pred ccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
+...+..|.++|||+|||.++++++ |+++|+.||.|.+|++. .+++++|||||+|.+.++|.+|++.+|+..+
T Consensus 7 ~p~~p~~p~~tlfVgnLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~ 82 (213)
T 4f02_A 7 NPSAPSYPMASLYVGDLHPDVTEAM----LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 82 (213)
T ss_dssp --------CCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHH----HHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc
Confidence 4455667889999999999999999 67999999999998765 3688999999999999999999999999999
Q ss_pred CCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 025973 84 YDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVI 163 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (245)
.|+.|++.++........
T Consensus 83 ~g~~i~~~~~~~~~~~~~-------------------------------------------------------------- 100 (213)
T 4f02_A 83 KGKPVRIMWSQRDPSLRK-------------------------------------------------------------- 100 (213)
T ss_dssp TTEECEEEECCCCTHHHH--------------------------------------------------------------
T ss_pred CCcccccccccccccccc--------------------------------------------------------------
Confidence 999999998765433111
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 025973 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 164 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v 240 (245)
....+|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|.+|++.|||..|+|++|.|
T Consensus 101 -----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V 175 (213)
T 4f02_A 101 -----SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 175 (213)
T ss_dssp -----HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred -----cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 123569999999999999999999999999999998764 789999999999999999999999999999999
Q ss_pred EEec
Q 025973 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
.||+
T Consensus 176 ~~a~ 179 (213)
T 4f02_A 176 GRFK 179 (213)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9986
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=222.06 Aligned_cols=159 Identities=22% Similarity=0.353 Sum_probs=141.9
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
++|||+|||.++++++ |+++|+.||.|.+|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 1 R~l~V~nlp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDI----LKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHH----HHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHH----HHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 6899999999999999 679999999999987653 5678999999999999999999989999999999999997
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccE
Q 025973 94 KTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNI 173 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
..... ....++.+
T Consensus 77 ~~~~~-------------------------------------------------------------------~~~~~~~~ 89 (166)
T 3md3_A 77 FQSQQ-------------------------------------------------------------------SSSDDTFN 89 (166)
T ss_dssp CCCCC-------------------------------------------------------------------CCCTTCEE
T ss_pred CCCCC-------------------------------------------------------------------CCCCCCce
Confidence 54321 01124578
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 174 l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|+..|||..++|++|.|.||++
T Consensus 90 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 90 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999999999999998763 68999999999999999999999999999999999986
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.9e-35 Score=218.61 Aligned_cols=157 Identities=24% Similarity=0.405 Sum_probs=142.3
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
++++|||+|||.++++++ |+++|+.||.|.+|.+. .+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRE----LYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 579999999999999999 77999999999998765 36789999999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++.+... ..+
T Consensus 78 ~~~~~~~~---------------------------------------------------------------------~~~ 88 (168)
T 1b7f_A 78 SYARPGGE---------------------------------------------------------------------SIK 88 (168)
T ss_dssp EECCCCSS---------------------------------------------------------------------TTT
T ss_pred EecCCCcc---------------------------------------------------------------------cCC
Confidence 99764321 024
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEEe
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a 243 (245)
+.+|+|+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|+..|||..+.| ++|+|.||
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 5679999999999999999999999999999998864 5899999999999999999999999987 99999997
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.3e-34 Score=216.75 Aligned_cols=157 Identities=20% Similarity=0.414 Sum_probs=141.0
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
++++|||+|||.++++++ |+++|+.||.|.+|.+.+ +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 1 s~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEE----FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CcceEEEcCCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 468999999999999999 679999999999986553 7889999999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++.+.... ..
T Consensus 77 ~~~~~~~~~---------------------------------------------------------------------~~ 87 (167)
T 1fxl_A 77 SYARPSSAS---------------------------------------------------------------------IR 87 (167)
T ss_dssp EECCCCCGG---------------------------------------------------------------------GT
T ss_pred EecCCCccc---------------------------------------------------------------------CC
Confidence 998643220 13
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeE--EEEEEe
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~--i~v~~a 243 (245)
..+|+|+|||..+++++|+++|+.||.|..+.++.++ +|+|||+|.+.++|.+|+..|||..+.|+. |+|.||
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 4579999999999999999999999999999998764 689999999999999999999999999864 999987
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.6e-34 Score=227.35 Aligned_cols=196 Identities=19% Similarity=0.299 Sum_probs=150.6
Q ss_pred CCCCCCCeEEEcCCCc-ccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 10 NEISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
...+++++|||+|||. ++++++ |+++|+.||.|.+|.+..+. +|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~----L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQS----LFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHH----HHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCEEEEeCCCcccCCHHH----HHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4467799999999999 999999 77999999999999888764 7999999999999999999999999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.++................ ..+... . ....... .+.........
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~-~~~~~~-----------~----------~~~~~~~------------~~~~~~~~~~~ 148 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQG-LTKDYG-----------N----------SPLHRFK------------KPGSKNFQNIF 148 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTT-TEEECT-----------T----------CSSCCCC------------STTSGGGTTCC
T ss_pred EEEEecCccccCccccccccc-cccccc-----------c----------CcccccC------------CccccccccCC
Confidence 999987653321110000000 000000 0 0000000 00000001123
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~ak~ 245 (245)
+++.+|||+|||..+++++|+++|+.|| .|.++.+++..+|+|||+|.+.++|.+|+..|||..+. |++|+|+||+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 4678999999999999999999999999 99999998766799999999999999999999999999 99999999973
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.2e-34 Score=220.94 Aligned_cols=170 Identities=21% Similarity=0.325 Sum_probs=143.7
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.++|||+|||.++++++ |+++|+.||.|.+|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 101 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDT----IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 101 (216)
T ss_dssp HHHTEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred CcCCEEEEECCCCCCCHHH----HHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence 3468999999999999999 779999999999997764 677899999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.++......... ....... ..
T Consensus 102 v~~~~~~~~~~~~----------~~~~~~~------------------------------------------------~~ 123 (216)
T 2qfj_A 102 VGRPSNIGQAQPI----------IDQLAEE------------------------------------------------AR 123 (216)
T ss_dssp EECCSCCGGGHHH----------HHHHHHH------------------------------------------------HT
T ss_pred EecCCCccccchh----------hhhhhcc------------------------------------------------cC
Confidence 9887654321110 0000000 02
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|+..|||..|+|++|.|.||+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 45789999999999999999999999999999999863 6899999999999999999999999999999999986
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.6e-34 Score=218.55 Aligned_cols=167 Identities=17% Similarity=0.297 Sum_probs=141.7
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
..+..+.++|||+|||.++++++ |+++|+.||.|.+|.+.. +|.++|||||+|.+.++|.+|+. +++..+.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g 81 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDES----LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDG 81 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECC
Confidence 34566789999999999999999 779999999999986653 67899999999999999999999 49999999
Q ss_pred ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 86 KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE 165 (245)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
+.|.|.++........ .
T Consensus 82 ~~l~v~~~~~~~~~~~---------------------------------------------------------------~ 98 (196)
T 1l3k_A 82 RVVEPKRAVSREDSQR---------------------------------------------------------------P 98 (196)
T ss_dssp EECEEEECCC----------------------------------------------------------------------
T ss_pred EEeeeecccCcccccc---------------------------------------------------------------c
Confidence 9999999765432100 0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 025973 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 166 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v 240 (245)
....+..+|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|.+|+.. +|..|+|+.|.|
T Consensus 99 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 99 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp ----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEE
T ss_pred ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEE
Confidence 011245789999999999999999999999999999999863 68999999999999999986 899999999999
Q ss_pred EEec
Q 025973 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
.||.
T Consensus 178 ~~a~ 181 (196)
T 1l3k_A 178 RKAL 181 (196)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 9
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=4.9e-34 Score=219.75 Aligned_cols=192 Identities=20% Similarity=0.333 Sum_probs=148.0
Q ss_pred CCCeEEEcCCCc-ccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 14 PNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 14 ~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.+++|||+|||. ++++++ |+++|+.||.|.+|.+..+. +|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~----l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQS----LFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHH----HHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHH----HHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 368999999999 999999 77999999999999888754 78999999999999999999999999999999999
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 025973 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+................ ..+ .+... .. ..... +.........++++
T Consensus 76 a~~~~~~~~~~~~~~~~-~~~-------------------------~~~~~---~~--~r~~~---~~~~~~~~~~~~~~ 121 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQG-LTK-------------------------DYGNS---PL--HRFKK---PGSKNFQNIFPPSA 121 (198)
T ss_dssp CCCCSCCCSSSSSSSSS-CEE-------------------------ESSCC---CT--TSSSS---CCCCCCSCCCCCCC
T ss_pred ecCCCcCCCCcCCcccc-ccc-------------------------cccCC---ch--hhccC---ccccccccCCCCcc
Confidence 87654321110000000 000 00000 00 00000 00000111234678
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEEecC
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g-~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~ak~ 245 (245)
+|||+|||..+++++|+++|+.|| .|..+.++++.+|+|||+|.+.++|.+|+..|||..++ |++|+|.||+.
T Consensus 122 ~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 122 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 999999999999999999999999 99999998877799999999999999999999999999 99999999973
No 10
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.2e-33 Score=218.24 Aligned_cols=193 Identities=12% Similarity=0.219 Sum_probs=142.5
Q ss_pred CCCCeEEEcCCC-cccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 13 SPNNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 13 ~~~~~l~V~nLp-~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++++|||+||| ..+++++ |+++|+.||.|.+|++.++ .+|||||+|.+.++|..|++.|||..+.|+.|+|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~----L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDR----VFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHH----HHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHH----HHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 468999999999 8999999 7799999999999988765 47999999999999999999999999999999999
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025973 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
+++.+.. ............ ... .. +. +.+. ..... +.........+++
T Consensus 76 ~s~~~~~-~p~~~~~~~~~~-~~~--~~--------------------~~---~~~~--~r~~~---~~~~~~~~~~~p~ 123 (205)
T 3tyt_A 76 VSKQPAI-MPGQSYGLEDGS-CSY--KD--------------------FS---ESRN--NRFST---PEQAAKNRIQHPS 123 (205)
T ss_dssp ECSCSCC-CCCSCCBCTTSC-BSE--EE--------------------CT---TCTT--CSCSS---HHHHTTSCCCCCC
T ss_pred EccCCcc-CCCcccccccCC-ccc--cc--------------------cC---CCcc--ccccC---cccccccccCCCc
Confidence 9875432 000000000000 000 00 00 0000 00000 0000000122467
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCe--eEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCe----EEEEEE
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGF--KEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQ----QLLITY 242 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v--~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~----~i~v~~ 242 (245)
++|||+|||..+|+++|+++|+.||.| ..++++.++ +|+|||+|.+.++|..|+..|||..+.|+ ++.|.|
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 889999999999999999999999999 899998863 59999999999999999999999999876 677776
Q ss_pred e
Q 025973 243 A 243 (245)
Q Consensus 243 a 243 (245)
|
T Consensus 204 ~ 204 (205)
T 3tyt_A 204 C 204 (205)
T ss_dssp E
T ss_pred c
Confidence 5
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.6e-33 Score=212.47 Aligned_cols=158 Identities=18% Similarity=0.399 Sum_probs=136.5
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CC--CeeeEEEEEecCHHHHHHHHHHHcCCccC---C
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TL--KHKGQAWLVFKDVASATAAVEKMQGFPFY---D 85 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~--~~kg~afV~F~~~~~A~~a~~~l~~~~~~---g 85 (245)
.+++|||+|||.++++++ |+++|+.||.|.+|.+.+ ++ .++|||||+|.+.++|.+|++.||+..+. +
T Consensus 2 ~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKD----LRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 578999999999999999 779999999999986654 33 78999999999999999999999998776 5
Q ss_pred ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 86 KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE 165 (245)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
+.+.+.++.....
T Consensus 78 ~~~~~~~~~~~~~------------------------------------------------------------------- 90 (175)
T 3nmr_A 78 HPIQMKPADSEKN------------------------------------------------------------------- 90 (175)
T ss_dssp SCCEEEECGGGCC-------------------------------------------------------------------
T ss_pred cceEEcccccccc-------------------------------------------------------------------
Confidence 6777777543211
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeC---CeEE
Q 025973 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIG---QQQL 238 (245)
Q Consensus 166 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~---g~~i 238 (245)
......+|||+|||..+|+++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|+..|||..+. +++|
T Consensus 91 -~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 -NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp -SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred -ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 00245679999999999999999999999999999999863 689999999999999999999998776 4999
Q ss_pred EEEEe
Q 025973 239 LITYA 243 (245)
Q Consensus 239 ~v~~a 243 (245)
.|.||
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99998
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=8.8e-34 Score=212.41 Aligned_cols=155 Identities=21% Similarity=0.354 Sum_probs=138.1
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
++++|||+|||.++++++ |+++|+.||.|.+|.+.+ +|.++|||||+|.+.++|.+|+.. +..+.|+.|.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDN----LREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHH----HHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccc
Confidence 578999999999999999 679999999999998764 578999999999999999999994 67889999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++.+.... .+
T Consensus 76 ~~~~~~~~~---------------------------------------------------------------------~~ 86 (167)
T 2cjk_A 76 KRAIPRDEQ---------------------------------------------------------------------DK 86 (167)
T ss_dssp EECCCHHHH---------------------------------------------------------------------HH
T ss_pred ccccchhhc---------------------------------------------------------------------cC
Confidence 887543221 12
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+.+|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|++ ++|..++|++|.|.||+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 3579999999999999999999999999999998763 6899999999999999998 89999999999999986
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=5.2e-33 Score=209.21 Aligned_cols=154 Identities=22% Similarity=0.419 Sum_probs=135.8
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhccc----C-------CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCC
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQF----G-------TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~----G-------~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~ 81 (245)
+++++|||+|||.++++++ |+++|+.| | .|..+... .++|||||+|.+.++|.+|+ .+|+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~----l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEA----MMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp CGGGEEEEESCCTTCCHHH----HHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred CcccEEEEcCCCcccCHHH----HHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 4679999999999999999 66888888 6 67777654 44799999999999999999 79999
Q ss_pred ccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 025973 82 PFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS 161 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.+.|+.|.|.++.....
T Consensus 74 ~~~g~~i~v~~~~~~~~--------------------------------------------------------------- 90 (172)
T 2g4b_A 74 IFQGQSLKIRRPHDYQP--------------------------------------------------------------- 90 (172)
T ss_dssp EETTEECEEECCSSCCC---------------------------------------------------------------
T ss_pred EecCceeeecCCcccCC---------------------------------------------------------------
Confidence 99999999987543211
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 025973 162 VIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 162 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~ 236 (245)
.....+|||+|||..+++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|.+|+..|||..++|+
T Consensus 91 ------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 91 ------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp ------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE
T ss_pred ------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe
Confidence 0124669999999999999999999999999999999874 68999999999999999999999999999
Q ss_pred EEEEEEe
Q 025973 237 QLLITYA 243 (245)
Q Consensus 237 ~i~v~~a 243 (245)
+|.|+||
T Consensus 165 ~l~V~~A 171 (172)
T 2g4b_A 165 KLLVQRA 171 (172)
T ss_dssp ECEEEEC
T ss_pred EEEEEeC
Confidence 9999998
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.3e-32 Score=211.57 Aligned_cols=175 Identities=20% Similarity=0.380 Sum_probs=138.9
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhccc----C-------CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCC
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQF----G-------TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~----G-------~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~ 81 (245)
..+++|||+|||.++++++ |+++|+.| | .|..+.. +.++|||||+|.+.++|.+|+ .||+.
T Consensus 2 ~~~~~l~V~nLp~~~te~~----l~~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEA----MMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp --CCEEEEESCCTTCCHHH----HHHHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred CceeEEEEcCCCCCCCHHH----HHHHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 3579999999999999999 66999998 5 5666655 456899999999999999999 69999
Q ss_pred ccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 025973 82 PFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS 161 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.+.|+.|.|.++............ .. ...+ .
T Consensus 74 ~~~g~~i~v~~~~~~~~~~~~~~~--------------------------------------~~-------~~~~----~ 104 (198)
T 2yh0_A 74 IFQGQSLKIRRPHDYQPLPGMSEN--------------------------------------PS-------VYVP----G 104 (198)
T ss_dssp EETTEEEEEECCCCCCCCCCSSSC--------------------------------------SS-------CCCT----T
T ss_pred EEcCceEEEeCCCCCCCCCCCcCC--------------------------------------Cc-------CCCC----C
Confidence 999999999987654221000000 00 0000 0
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 025973 162 VIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 162 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~ 236 (245)
........+..+|||+|||..+++++|+++|+.||.|..+.+..++ +|||||+|.++++|.+|+..|||..|+|+
T Consensus 105 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 184 (198)
T 2yh0_A 105 VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 184 (198)
T ss_dssp SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTE
T ss_pred CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 0011112456789999999999999999999999999999999874 68999999999999999999999999999
Q ss_pred EEEEEEec
Q 025973 237 QLLITYAK 244 (245)
Q Consensus 237 ~i~v~~ak 244 (245)
+|.|.||+
T Consensus 185 ~l~v~~a~ 192 (198)
T 2yh0_A 185 KLLVQRAS 192 (198)
T ss_dssp ECEEEESC
T ss_pred EEEEEECC
Confidence 99999986
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.9e-33 Score=212.24 Aligned_cols=163 Identities=18% Similarity=0.341 Sum_probs=135.3
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE--EEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
..+..+.++|||+|||.++++++|+ ++|+.||.+.. +....++.++|||||+|.+.++|.+|++ ||+..+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 81 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELK----VAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 81 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHH----HHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHH----HHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCe
Confidence 4567789999999999999999966 55555554433 3334567889999999999999999996 999999999
Q ss_pred eEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 87 PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA 166 (245)
Q Consensus 87 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (245)
.|.|.++......
T Consensus 82 ~l~v~~~~~~~~~------------------------------------------------------------------- 94 (175)
T 1fje_B 82 EIKLEKPKGRDSK------------------------------------------------------------------- 94 (175)
T ss_dssp EEEEECCCCSSCS-------------------------------------------------------------------
T ss_pred EEEEecCCCcccc-------------------------------------------------------------------
Confidence 9999998654210
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEec-CCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE-AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~-~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
...+..+|||+|||..+++++|+++|+.||.|..+ ... ..+|+|||+|.+.++|.+|+..|||..|+|++|.|+||+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 01245789999999999999999999999998877 111 237999999999999999999999999999999999996
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.6e-31 Score=216.78 Aligned_cols=163 Identities=18% Similarity=0.256 Sum_probs=144.0
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.++.++|||+|||.++++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|+..|+|..+.|+.|
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQ----FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCEEEEcCCCCcCCHHH----HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34678999999999999999 67999999999988654 478899999999999999999999999999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.++.+..... ..
T Consensus 168 ~v~~a~~~~~~~------------------------------------------------------------------~~ 181 (284)
T 3smz_A 168 YVHWTDAGQLTP------------------------------------------------------------------AL 181 (284)
T ss_dssp EEEECCGGGCCT------------------------------------------------------------------TT
T ss_pred EEEECCCCCCCc------------------------------------------------------------------cc
Confidence 999986532100 01
Q ss_pred CCccEEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDT-TPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~-t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
....+|||+|||..+ ++++|+++|+.||.|.++.+..+. +|+|||+|.++++|.+|+..|||..|+|++|.|.||
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 245779999999995 999999999999999999998863 689999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 262 ~ 262 (284)
T 3smz_A 262 A 262 (284)
T ss_dssp C
T ss_pred c
Confidence 6
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=2.6e-31 Score=216.36 Aligned_cols=165 Identities=13% Similarity=0.231 Sum_probs=140.1
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccC-CeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||+|||..+++++ |+++|+.|| .|..|.+.. .+.++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 116 ~~~~l~v~nlp~~~t~~~----l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 191 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRN----IRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT 191 (292)
T ss_dssp CSCEEEEECCCTTCCHHH----HHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEECCCCCCCHHH----HHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 578999999999999999 779999999 999997764 4578999999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++.+....... .....+
T Consensus 192 ~~a~~~~~~~~~--------------------------------------------------------------~~~~~~ 209 (292)
T 2ghp_A 192 KVSNPLEKSKRT--------------------------------------------------------------DSATLE 209 (292)
T ss_dssp EECCCC-----------------------------------------------------------------------CCT
T ss_pred EECCCCcccccc--------------------------------------------------------------cccCCC
Confidence 998754331100 001135
Q ss_pred ccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 171 NNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~v~l~~~~------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
..+|||+|||.. +++++|+++|+.||.|..|.++.+. +|+|||+|.+.++|.+|+ .|||..|+|++|.|+||
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 678999999999 9999999999999999999998753 589999999999999999 99999999999999999
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 289 ~~ 290 (292)
T 2ghp_A 289 DK 290 (292)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=6.9e-31 Score=213.07 Aligned_cols=150 Identities=19% Similarity=0.335 Sum_probs=137.3
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..++++|||+|||.++++++ |+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|+..||+..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~----l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 90 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQE----VHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ 90 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHH----HHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE
Confidence 34679999999999999999 679999999 988877 5668999999999999999999999999999999998
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025973 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
++. .+
T Consensus 91 ~~~---------------------------------------------------------------------------~~ 95 (284)
T 3smz_A 91 LQP---------------------------------------------------------------------------TD 95 (284)
T ss_dssp ECC---------------------------------------------------------------------------CS
T ss_pred ecC---------------------------------------------------------------------------CC
Confidence 731 34
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+|||+|||..+++++|+++|+.||.|..+.++.++ +|+|||+|.+.++|..|+..|||..++|++|.|.||+
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 579999999999999999999999999999988753 6899999999999999999999999999999999985
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=8.5e-31 Score=210.03 Aligned_cols=154 Identities=18% Similarity=0.340 Sum_probs=137.6
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.....++++|||+|||.++|+++ |+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEED----FKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHH----HHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 34456678999999999999999 669999999999998864 47999999999999999999999999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.++.
T Consensus 89 ~v~~a~-------------------------------------------------------------------------- 94 (261)
T 3sde_A 89 RIRFAT-------------------------------------------------------------------------- 94 (261)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred Eeeecc--------------------------------------------------------------------------
Confidence 999863
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhC-CCeeC---CeEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQ-SLKIG---QQQLLI 240 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~-g~~~~---g~~i~v 240 (245)
++.+|||+|||..+|+++|+++|+.||.|.+|.++.+. +|+|||+|.+.++|.+|+..|| |..+. +++|.|
T Consensus 95 -~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 -HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp -CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred -cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 23569999999999999999999999999999998763 6899999999999999999995 45554 999999
Q ss_pred EEec
Q 025973 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
.+++
T Consensus 174 ~~~~ 177 (261)
T 3sde_A 174 EPME 177 (261)
T ss_dssp EECC
T ss_pred eecc
Confidence 9985
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.1e-30 Score=210.06 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=133.9
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCC-CCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT-LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
...+++++|||+|||.++++++ |+++|+.||.|.+|.+.++ ..++|||||+|.+.++|.+|++ +|+..+.|+.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNK----VYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp ------CEEEEEEECTTCCHHH----HHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 3466799999999999999999 7799999999999977652 2357999999999999999996 99999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025973 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.++
T Consensus 111 ~v~~~--------------------------------------------------------------------------- 115 (292)
T 2ghp_A 111 IVSHL--------------------------------------------------------------------------- 115 (292)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEEEC---------------------------------------------------------------------------
Confidence 99874
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
...+|||+|||..+++++|+++|+.|| .|..+.++.++ +|||||+|.+.++|..|+..|||..+.|++|.|.||
T Consensus 116 -~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 -TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp -CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 235799999999999999999999999 99999998753 799999999999999999999999999999999997
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
.
T Consensus 195 ~ 195 (292)
T 2ghp_A 195 N 195 (292)
T ss_dssp C
T ss_pred C
Confidence 5
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.91 E-value=7.1e-24 Score=155.78 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=111.8
Q ss_pred CCCeeeEEEEEecCHHHHHHHHHHH-cCCccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhh
Q 025973 54 TLKHKGQAWLVFKDVASATAAVEKM-QGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132 (245)
Q Consensus 54 ~~~~kg~afV~F~~~~~A~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (245)
....+|+++|+|.+.++|.+|++.+ |+..+.| .+.+.++............
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~--------------------------- 60 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH--------------------------- 60 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS---------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc---------------------------
Confidence 3456899999999999999999999 9999999 9999887544321100000
Q ss_pred cCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEE
Q 025973 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212 (245)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~af 212 (245)
...........+.++|||+|||..+++++|+++|+.||.|.+|.++.+.+||||
T Consensus 61 --------------------------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~af 114 (150)
T 2i2y_A 61 --------------------------HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAF 114 (150)
T ss_dssp --------------------------CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEE
T ss_pred --------------------------ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEE
Confidence 000001112235678999999999999999999999999999999998779999
Q ss_pred EEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 213 v~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
|+|.+.++|..|+..|||..|+|++|+|.||+
T Consensus 115 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 115 VEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp EEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred EEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 99999999999999999999999999999986
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=3e-23 Score=145.49 Aligned_cols=81 Identities=26% Similarity=0.416 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..+++|||+|||.++++++ |+++|+.||.|.+|++.. .+.++|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 3 ~~~~~lfV~nLp~~~te~~----L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKA----LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp --CCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEECCCCCCCCHHH----HHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3467899999999999999 779999999999987654 45579999999999999999999999999999999999
Q ss_pred Eccccc
Q 025973 92 YAKTKS 97 (245)
Q Consensus 92 ~~~~~~ 97 (245)
++..+.
T Consensus 79 ~a~~~~ 84 (115)
T 4f25_A 79 RFKSRK 84 (115)
T ss_dssp ESSCCC
T ss_pred ECCCcc
Confidence 987543
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.2e-22 Score=150.45 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
....+|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+|++|.|.||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999998863 689999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 148 ~ 148 (158)
T 2kn4_A 148 R 148 (158)
T ss_dssp C
T ss_pred C
Confidence 6
No 24
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=8.8e-23 Score=144.89 Aligned_cols=99 Identities=29% Similarity=0.509 Sum_probs=87.9
Q ss_pred cccccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 4 EVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
.......+.+++++|||+|||..+++++|++.|+++|+.||.|.+|.+.+++.++|||||+|.+.++|..|+..|||..+
T Consensus 18 ~~~s~~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 18 DLGSTPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp ----CCCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 34444566788999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CCceEEEEEccccchHhhh
Q 025973 84 YDKPMRIQYAKTKSDIIAK 102 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~~~~~ 102 (245)
.|+.|+|.|+..+......
T Consensus 98 ~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 98 QGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp TTSCCEEEECCCCCHHHHC
T ss_pred CCCEEEEEEccCcchhccc
Confidence 9999999999988775543
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=130.34 Aligned_cols=75 Identities=24% Similarity=0.468 Sum_probs=70.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+|+++|+++|+.||.|.++++++++ +|||||+|.++++|.+|++.|||..|+|++|+|.|||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45679999999999999999999999999999999864 6899999999999999999999999999999999996
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=130.99 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
-..+++|||+|||.++|+++ |+++|+.||.|.+|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDE----LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44578999999999999999 67999999999998654 468899999999999999999999999999999999
Q ss_pred EEEEccc
Q 025973 89 RIQYAKT 95 (245)
Q Consensus 89 ~v~~~~~ 95 (245)
+|.|+++
T Consensus 92 ~V~~AkP 98 (99)
T 4fxv_A 92 KVSYARP 98 (99)
T ss_dssp EEEECCB
T ss_pred EEEEeeC
Confidence 9999875
No 27
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=128.55 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCe--eCCeEEEEEEec
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK--IGQQQLLITYAK 244 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~--~~g~~i~v~~ak 244 (245)
..+++++|||+|||..+|+++|+++|++||.|.++.+++++ |+|||+|.+.++|..|+..||+.. +.|++|+|+||+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 34578899999999999999999999999999999999875 999999999999999999999876 789999999997
Q ss_pred C
Q 025973 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 96 ~ 96 (100)
T 3r27_A 96 S 96 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 28
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=3.3e-21 Score=130.97 Aligned_cols=91 Identities=68% Similarity=1.089 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.+++++|||+|||.++++++|++.|+++|+.||.|..|.+.+++.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 45678999999999999999998888889999999999999888888899999999999999999999999999999999
Q ss_pred EEEccccchHh
Q 025973 90 IQYAKTKSDII 100 (245)
Q Consensus 90 v~~~~~~~~~~ 100 (245)
|.++.+.....
T Consensus 83 v~~a~~~~~~~ 93 (97)
T 1nu4_A 83 IQYAKTDSDII 93 (97)
T ss_dssp EEECSSCCTHH
T ss_pred EEEccCCCccc
Confidence 99998876543
No 29
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=126.53 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=80.1
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
++.+....++|||+|||.++++++|+..|+++|+.||.|.+|.+..+...+|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 2 ss~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 2 SSGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34556778999999999999999988778899999999999988765434899999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025973 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 30
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=123.33 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=75.6
Q ss_pred CCCCCCCe-EEEcCCCcccChHHHHHHHHHhhccc-CCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 10 NEISPNNT-IYINNLNEKVKIDQLKQSLHAVFKQF-GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~-l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
+..+|+.+ |||+|||.++++++|++.|+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|||..+.|+.
T Consensus 3 ~~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 3 SGSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp SSCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566777 99999999999999999999999999 599998 34 99999999999999999999999999999
Q ss_pred EEEEEccccchH
Q 025973 88 MRIQYAKTKSDI 99 (245)
Q Consensus 88 i~v~~~~~~~~~ 99 (245)
|+|.|++.+++.
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999887763
No 31
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.6e-20 Score=124.03 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHh--CCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL--QSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l--~g~~~~g~~i~v~~ak~ 245 (245)
+++++|||+|||..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|+..| ++..+.|++|+|+||+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK-NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 567899999999999999999999999999999999884 99999999999999999977 46789999999999973
No 32
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=1.1e-20 Score=132.44 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
++.++++|||+|||..+++++ |+++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEE----MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 356789999999999999999 7799999999999998888888999999999999999999999999999999999
Q ss_pred EEccccc
Q 025973 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
.++.+..
T Consensus 80 ~~a~~~~ 86 (115)
T 3lqv_A 80 LYYNANR 86 (115)
T ss_dssp EECCHHH
T ss_pred EEecCCh
Confidence 9987543
No 33
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=125.35 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=72.9
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCc--cCC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFP--FYD 85 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~--~~g 85 (245)
+....+|+++|||+|||.++++++ |+++|++||.|.+|++.+ .||+|||+|.+.++|..|+..|++.. +.|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~----L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEAD----LVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred ccccCCCCcEEEEeCCCCCCCHHH----HHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 445678899999999999999999 779999999999998875 46999999999999999999999876 779
Q ss_pred ceEEEEEccccc
Q 025973 86 KPMRIQYAKTKS 97 (245)
Q Consensus 86 ~~i~v~~~~~~~ 97 (245)
++|.|.|++.+.
T Consensus 87 r~i~V~~S~~k~ 98 (100)
T 3r27_A 87 HPAFVNYSTSQK 98 (100)
T ss_dssp EEEEEEECSCSC
T ss_pred cEEEEEeccccc
Confidence 999999997653
No 34
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=126.46 Aligned_cols=76 Identities=11% Similarity=0.165 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCC--eeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL--KIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~ak~ 245 (245)
.++++|||+|||. .+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++.||+. .|.|++|+|+||++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3678899999999 99999999999999999999999886 89999999999999999999864 59999999999973
No 35
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6e-20 Score=125.77 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCC--eeCCeEEEEEEecC
Q 025973 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL--KIGQQQLLITYAKK 245 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~ak~ 245 (245)
.+++++|||+|||..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|+..|++. .+.|++|+|+||+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3567899999999999999999999999999999998875 99999999999999999988764 48999999999963
No 36
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=127.08 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~ak~ 245 (245)
+++++|||+|||..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++.+++ ..|.|++|+|.||+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 356789999999999999999999999999999999985 9999999999999999998864 789999999999873
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=127.23 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.++.++|||+|||.++++++ |+++|++||.|.+|.+. .+++++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~----L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETF----LKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEECCCCCCCHHH----HHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 46789999999999999999 77999999999998654 468899999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025973 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++....
T Consensus 79 ~V~~a~~~~ 87 (110)
T 3s8s_A 79 HAQLDIKGQ 87 (110)
T ss_dssp EEEECSTTH
T ss_pred EEEECCCCc
Confidence 999986543
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=9.4e-20 Score=126.32 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++.++|||+|||..+++++|+++|++||.|.+|.++.++ +|||||+|.+.++|..|++.|||..|.|++|.|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999998764 689999999999999999999999999999999998
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
++
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 39
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=6.8e-20 Score=119.28 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=69.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+.-|+|+||+..+|+++|+++|++||.|.++++... +|||||+|.++++|.+|++.||+..++|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 455999999999999999999999999999999886 4999999999999999999999999999999999984
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=121.46 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|.+|++.|||..|.|++|+|+||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 466789999999999999999999999999999998863 589999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
|
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 7
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.5e-19 Score=119.59 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|..|++.|||..++|++|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467889999999999999999999999999999998752 689999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
|
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1.1e-19 Score=127.18 Aligned_cols=74 Identities=19% Similarity=0.357 Sum_probs=70.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+.+|||+|||..+++++|+++|+.||.|.+|+++.++ +|||||+|.++++|.+|++.|||..|+|++|.|.+|+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4579999999999999999999999999999999864 6899999999999999999999999999999999986
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=122.69 Aligned_cols=73 Identities=27% Similarity=0.491 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCC----eeCCeEEEE
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSL----KIGQQQLLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~--v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~----~~~g~~i~v 240 (245)
++|||+|||..+|+++|+++|++||. +.+|++++++ +|||||+|.++++|.+|++.|||. .++||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 57999999999999999999999995 6789998864 689999999999999999999996 488999999
Q ss_pred EEec
Q 025973 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
+|||
T Consensus 90 ~~Ak 93 (95)
T 2lkz_A 90 DFAK 93 (95)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9997
No 44
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=126.33 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=71.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEEEEecC
Q 025973 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLITYAKK 245 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~ak~ 245 (245)
.+++++|||+|||..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|+..+++ ..|.|++|+|+||+.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 3567899999999999999999999999999999999885 9999999999999999998874 689999999999973
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=6.4e-19 Score=123.93 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=72.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
..++.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567889999999999999999999999999999998763 6899999999999999999999999999999999
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
|||
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 996
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=2.2e-19 Score=118.82 Aligned_cols=80 Identities=31% Similarity=0.523 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
...+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHH----HHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHH----HHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 456789999999999999999 67999999999998764 46778999999999999999999999999999999
Q ss_pred EEEEEcc
Q 025973 88 MRIQYAK 94 (245)
Q Consensus 88 i~v~~~~ 94 (245)
|+|.+++
T Consensus 79 l~v~~ak 85 (85)
T 3mdf_A 79 IRVNLAK 85 (85)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999974
No 47
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=123.88 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+..++.++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKD----IEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34466789999999999999999 77999999999999998888889999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025973 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.+++...
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999987654
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-20 Score=125.25 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=70.5
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccC-CeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHH-cCCccCCceEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFK---TLKHKGQAWLVFKDVASATAAVEKM-QGFPFYDKPMR 89 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l-~~~~~~g~~i~ 89 (245)
+++|||+|||.++|+++ |+++|+.|| .|.+|++.+ +|.++|||||+|.+.++|.+|++.+ ++..+.|+.|+
T Consensus 1 S~~i~v~nLp~~~te~~----l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDD----IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHH----HHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 57899999999999999 669999999 798887654 6889999999999999999999977 45779999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.|+.++..
T Consensus 77 V~~a~~~~~ 85 (91)
T 2lxi_A 77 MHYSDPKPK 85 (91)
T ss_dssp EECCCSCCC
T ss_pred EEEcCCCCC
Confidence 999977543
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=123.69 Aligned_cols=86 Identities=24% Similarity=0.481 Sum_probs=77.3
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
......+.++|||+|||..+++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDM----LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHH----HHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred cccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345567789999999999999999 67999999999998665 46789999999999999999999999999999
Q ss_pred CceEEEEEccccc
Q 025973 85 DKPMRIQYAKTKS 97 (245)
Q Consensus 85 g~~i~v~~~~~~~ 97 (245)
|+.|+|.++.++.
T Consensus 95 g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 95 GRPMKVGHVTERT 107 (108)
T ss_dssp SSCCEEECSCSSC
T ss_pred CEEEEEEEcccCC
Confidence 9999999987654
No 50
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=118.45 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=71.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL-QSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l-~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.+.+++ |||||+|.+.++|..|+..| ||..+.|++|.|.|||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-QCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-TEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-CEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999999999999999999999999999875 89999999999999999999 9999999999999996
No 51
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=119.77 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..+.++|||+|||.++++++ |+++|+.||.|.+|.+. .++.++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAA----IAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp ---CEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCceEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45688999999999999999 77999999999998665 367899999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025973 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.++.++
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99998764
No 52
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=122.87 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=75.4
Q ss_pred ccccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCC--c
Q 025973 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF--P 82 (245)
Q Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~--~ 82 (245)
........+++++|||+|||.++++++ |+++|++||.|..|.+.++ ||||||+|.+.++|.+|++.|++. .
T Consensus 5 ~~~~~~~~~p~~~l~V~nLp~~~te~~----L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 5 SSGSHHKVSVSPVVHVRGLCESVVEAD----LVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp CCCSCCCCCCCSEEEEESCCSSCCHHH----HHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 344455678899999999999999999 7799999999999988753 799999999999999999988764 5
Q ss_pred cCCceEEEEEccccch
Q 025973 83 FYDKPMRIQYAKTKSD 98 (245)
Q Consensus 83 ~~g~~i~v~~~~~~~~ 98 (245)
+.|+.|.|.|+..+..
T Consensus 78 i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 78 IAGQQAFFNYSTSKRI 93 (104)
T ss_dssp SSSSBCEEEECSSSSC
T ss_pred ECCEEEEEEEccCccc
Confidence 8999999999976544
No 53
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=124.23 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=70.2
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEEEEec
Q 025973 168 APPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~ak 244 (245)
..++++|||+|||.. +++++|+++|++||.|.+|.+++.+ |||||+|.+.++|..|+..||+ ..|.|++|+|.||+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 346789999999998 9999999999999999999998775 9999999999999999998865 56899999999997
Q ss_pred C
Q 025973 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
+
T Consensus 101 ~ 101 (112)
T 1x4f_A 101 K 101 (112)
T ss_dssp S
T ss_pred c
Confidence 4
No 54
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=119.70 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|.+|+..|||..|.|++|.|.||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 467889999999999999999999999999999998753 589999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 7
No 55
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.6e-19 Score=121.29 Aligned_cols=81 Identities=19% Similarity=0.433 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
|+++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 1 P~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQ----ILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 578999999999999999 779999999999998764 4788999999999999999999999999999999999
Q ss_pred EEccccch
Q 025973 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.+...
T Consensus 77 ~~a~~~~~ 84 (96)
T 2x1f_A 77 GYSSNSDI 84 (96)
T ss_dssp EECSCSSG
T ss_pred EEcCCCCC
Confidence 99987654
No 56
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.7e-19 Score=117.34 Aligned_cols=76 Identities=12% Similarity=0.182 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
...+.-|||+||++.+|+++ |+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 4 ~~~~~wL~VgNL~~~~te~~----L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPT----LRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHH----HHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCccceEEEeCCCccCCHHH----HHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 45688999999999999999 779999999999998764 58999999999999999999999999999999999
Q ss_pred Ecc
Q 025973 92 YAK 94 (245)
Q Consensus 92 ~~~ 94 (245)
++.
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 984
No 57
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=123.87 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC--CccCCce
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG--FPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~--~~~~g~~ 87 (245)
..+.+.++|||+|||.++++++ |+++|++||.|.+|++.++ ||||||+|.+.++|.+|++.|++ ..+.|++
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~d----L~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGE----VISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHH----HHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3467889999999999999999 6799999999999988764 79999999999999999998864 7899999
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|.|.+++.+..
T Consensus 84 l~V~~A~~~~~ 94 (105)
T 1sjq_A 84 IYIQFSNHKEL 94 (105)
T ss_dssp CCBCCCSSSSC
T ss_pred EEEEEcCCCCC
Confidence 99999976544
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=117.73 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+++.+|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.+.++|..|+..|||..+.|++|+|.||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356789999999999999999999999999999998864 689999999999999999999999999999999999
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 73
No 59
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=123.90 Aligned_cols=74 Identities=30% Similarity=0.424 Sum_probs=67.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhC-CCeeCCeEEEEEEe
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQ-SLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~-g~~~~g~~i~v~~a 243 (245)
+++|||+|||..+|+++|+++|+.|| .|.+|++++++ +|||||+|.++++|.+|++.++ +..++|++|.|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 79999998763 6999999999999999999874 57899999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 6
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.5e-19 Score=120.28 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 456789999999999999999999999999999999863 6899999999999999999999999999999999986
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=120.39 Aligned_cols=83 Identities=23% Similarity=0.452 Sum_probs=75.3
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
+....++.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNND----LYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHH----HHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 445577889999999999999999 779999999999997765 4678899999999999999999999999999
Q ss_pred CceEEEEEcc
Q 025973 85 DKPMRIQYAK 94 (245)
Q Consensus 85 g~~i~v~~~~ 94 (245)
|+.|+|.+++
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 62
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=4.1e-19 Score=116.92 Aligned_cols=78 Identities=26% Similarity=0.458 Sum_probs=71.8
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
+.+|||+|||.++++++ |+++|+.||.|.+|.+. .++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 1 t~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDET----LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHH----HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 46899999999999999 67999999999998655 468899999999999999999999999999999999999
Q ss_pred Ecccc
Q 025973 92 YAKTK 96 (245)
Q Consensus 92 ~~~~~ 96 (245)
++.++
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 98765
No 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=121.00 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEED----LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3456789999999999999999 779999999999997764 677899999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++.++..
T Consensus 79 ~l~V~~a~~~~~ 90 (99)
T 1whw_A 79 MLHVLPSTIKKE 90 (99)
T ss_dssp EEEEEECCCCST
T ss_pred EEEEEEcCCCcc
Confidence 999999987654
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=120.48 Aligned_cols=85 Identities=20% Similarity=0.366 Sum_probs=76.6
Q ss_pred ccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
....+..++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERD----LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 82 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHH----HHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4456678899999999999999999 779999999999987653 578899999999999999999999999999
Q ss_pred CCceEEEEEccc
Q 025973 84 YDKPMRIQYAKT 95 (245)
Q Consensus 84 ~g~~i~v~~~~~ 95 (245)
.|+.|+|.+++.
T Consensus 83 ~g~~l~v~~a~~ 94 (95)
T 2cqc_A 83 DGRRIRVSGPSS 94 (95)
T ss_dssp TTEEEEEECCSC
T ss_pred CCEEEEEEecCC
Confidence 999999999864
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=121.66 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=78.9
Q ss_pred cccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
........+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDER----LRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHH----HHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34455567899999999999999999 779999999999986554 6788999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|.|.++.++..
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 82 TKPLYVALAQRKEE 95 (103)
T ss_dssp SSBCEEEECSSCCC
T ss_pred CcEEEEEEeccccc
Confidence 99999999987654
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-18 Score=118.80 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 456789999999999999999999999999999999864 6899999999999999999999999999999999986
No 67
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=120.28 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=77.4
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
+..+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++ ||+..+.
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGIPHNCGETE----LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CCCCCSSCCEEEEESCCSSCCHHH----HHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 445677889999999999999999 779999999999997765 57789999999999999999999 9999999
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 78 g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 78 GKKVEVKRAEPRDS 91 (99)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CeEEEEEECCCCcc
Confidence 99999999976644
No 68
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=7.2e-19 Score=115.75 Aligned_cols=74 Identities=26% Similarity=0.382 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|..|+..|||..++|++|+|.||++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 579999999999999999999999999999998763 68999999999999999999999999999999999974
No 69
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6e-19 Score=119.21 Aligned_cols=83 Identities=30% Similarity=0.561 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.++.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDM----LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 45789999999999999999 679999999999987665 47789999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.++..
T Consensus 78 ~V~~a~~~~~ 87 (95)
T 2dnz_A 78 RVGHVTERLD 87 (95)
T ss_dssp EEEESSCCCC
T ss_pred EEEEcccccC
Confidence 9999976644
No 70
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.8e-19 Score=118.86 Aligned_cols=75 Identities=23% Similarity=0.432 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC--CeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~ak 244 (245)
+++++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|||..+. |++|.|.||+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 46678999999999999999999999999999999887 589999999999999999999999999 9999999996
No 71
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.7e-19 Score=119.90 Aligned_cols=76 Identities=25% Similarity=0.411 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
++.++|||+|||..+++++|+++|+.||.|..|.+.+++ |||||+|.+.++|..|+..|||..|.|++|.|.||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 466789999999999999999999999999999999875 8999999999999999999999999999999999973
No 72
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=120.15 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=74.0
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHc--CCccCC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ--GFPFYD 85 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~--~~~~~g 85 (245)
.....+++++|||+|||.++++++ |+++|++||.|..|.+.++ ||||||+|.+.++|.+|++.|+ +..+.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~----L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETE----VIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHH----HHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 345567899999999999999999 6799999999999988764 7999999999999999999875 577999
Q ss_pred ceEEEEEccccch
Q 025973 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|.|.|+..+..
T Consensus 81 r~l~V~~a~~~~~ 93 (101)
T 2cq1_A 81 QPIYIQYSNHKEL 93 (101)
T ss_dssp EECEEEECSCSSC
T ss_pred cEEEEEEcCcccC
Confidence 9999999976544
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=120.03 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEE----LEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4466789999999999999999 779999999999986553 6788999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025973 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++.++.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999987654
No 74
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=121.55 Aligned_cols=87 Identities=28% Similarity=0.420 Sum_probs=78.3
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
...+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPL----LWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CcccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 445567889999999999999999 779999999999997765 6778999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.+...
T Consensus 84 g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 84 GKPIRVNKASAHNK 97 (105)
T ss_dssp SCBCEEEETTTTSC
T ss_pred CeEEEEEECCCCCc
Confidence 99999999876543
No 75
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=122.01 Aligned_cols=88 Identities=23% Similarity=0.439 Sum_probs=78.5
Q ss_pred ccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
.......+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+
T Consensus 4 ~~~~~~~~~~~l~v~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 4 GSSGMASDEGKLFVGGLSFDTNEQS----LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp SCCCCCCCCSEEEEESCCTTCCHHH----HHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3455677899999999999999999 679999999999987765 567899999999999999999999999999
Q ss_pred CCceEEEEEccccch
Q 025973 84 YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (245)
.|+.|+|.++.+...
T Consensus 80 ~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 80 DGRQIRVDQAGKSSD 94 (102)
T ss_dssp TSCCCEEEEEECCCC
T ss_pred CCeEEEEEECCCCCC
Confidence 999999999876543
No 76
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=119.91 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=72.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 467889999999999999999999999999999998864 689999999999999999999999999999999998
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 93 ~~ 94 (103)
T 2cq0_A 93 KP 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 77
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=118.58 Aligned_cols=76 Identities=24% Similarity=0.448 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.||+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456789999999999999999999999999999999865 5899999999999999999999999999999999986
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=122.76 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
....++|||+|||..+++++|+++|+.||.|..+.+..++ +|||||+|.+.++|.+|+..|||..|+|++|.|.+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3466789999999999999999999999999999998763 6899999999999999999999999999999999997
Q ss_pred C
Q 025973 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 106 ~ 106 (109)
T 2err_A 106 A 106 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=121.35 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=77.6
Q ss_pred ccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
....+..+.++|||+|||..+++++ |+++|+.||.|..|.+.. .+.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVL----ILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHH----HHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHH----HHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 3455677899999999999999999 779999999999997765 34468999999999999999999999999999
Q ss_pred ceEEEEEccccch
Q 025973 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.+...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 83 KEVKVNWATTPSS 95 (103)
T ss_dssp EEEEEEECCCTTC
T ss_pred CeEEEEECCCCcc
Confidence 9999999977543
No 80
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=122.34 Aligned_cols=88 Identities=28% Similarity=0.449 Sum_probs=78.6
Q ss_pred ccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
.+.....+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+
T Consensus 4 ~~~~~~~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 4 GSSGMATTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp CSSCSCCCCSCEEEESCCSSCCHHH----HHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred CcCCcCCCCCEEEEeCCCCCCCHHH----HHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3455677899999999999999999 779999999999987764 477899999999999999999999999999
Q ss_pred CCceEEEEEccccch
Q 025973 84 YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (245)
.|+.|+|.++.+...
T Consensus 80 ~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 80 FGRTIRVNLAKPMRI 94 (102)
T ss_dssp TTEEEEEEECCCCCC
T ss_pred CCcEEEEEeCCCCCC
Confidence 999999999876543
No 81
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=8.3e-19 Score=118.77 Aligned_cols=76 Identities=21% Similarity=0.416 Sum_probs=71.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
|+++|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.+.++|..|+..|||..++|++|.|.||+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35789999999999999999999999999999998763 6899999999999999999999999999999999996
Q ss_pred C
Q 025973 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=121.57 Aligned_cols=87 Identities=24% Similarity=0.400 Sum_probs=77.9
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
+.++..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDS----LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445667789999999999999999 679999999999997764 4778999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|.|.++.....
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 82 GRELRVQVARYGRR 95 (103)
T ss_dssp TBCCEEEECSSCCS
T ss_pred CcEEEEEECCcCCC
Confidence 99999999876543
No 83
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=2e-19 Score=122.66 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCc------ccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCc
Q 025973 12 ISPNNTIYINNLNE------KVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~------~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~ 82 (245)
...+++|||+|||. ++++++ |+++|++||.|.+|.+. .+|+++|||||+|.+.++|.+|++.|||..
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~----L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKA----LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHH----HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHH----HHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 34578999999999 999999 77999999999998765 368899999999999999999999999999
Q ss_pred cCC-ceEEEEEccccch
Q 025973 83 FYD-KPMRIQYAKTKSD 98 (245)
Q Consensus 83 ~~g-~~i~v~~~~~~~~ 98 (245)
+.| +.|+|.++.+...
T Consensus 79 ~~g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 79 LDLKHRLFLYTMKDVER 95 (100)
T ss_dssp SSSSCBCEEEESHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 999 9999999876543
No 84
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.4e-19 Score=118.72 Aligned_cols=75 Identities=24% Similarity=0.257 Sum_probs=71.1
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
..++|||+|||..+++++|+ ++|+.||.|.+|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 55789999999999999999 999999999999999764 689999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 88 ~ 88 (96)
T 2dgx_A 88 T 88 (96)
T ss_dssp C
T ss_pred C
Confidence 6
No 85
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=6.1e-19 Score=118.44 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
...+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKM----LKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHH----HHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999 679999999999986654 778999999999999999999999999999999999
Q ss_pred EEEccccc
Q 025973 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|.++.+..
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99987654
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=118.89 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--------VRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g 235 (245)
++..+|||+|||..+++++|+++|+.||.|.. +.++.++ +|||||+|.+.++|..|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46678999999999999999999999999999 9998763 6899999999999999999999999999
Q ss_pred eEEEEEEec
Q 025973 236 QQLLITYAK 244 (245)
Q Consensus 236 ~~i~v~~ak 244 (245)
++|+|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999996
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=120.62 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=77.9
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHHHHHHH-cCCc
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAAVEKM-QGFP 82 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~a~~~l-~~~~ 82 (245)
...+..+.++|||+|||..+++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..| |+..
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQRE----IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred ccccCCCCCEEEEeCCCCcCCHHH----HHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 345567899999999999999999 779999999999997753 5778999999999999999999999 9999
Q ss_pred cCCceEEEEEccccch
Q 025973 83 FYDKPMRIQYAKTKSD 98 (245)
Q Consensus 83 ~~g~~i~v~~~~~~~~ 98 (245)
+.|+.|+|.++.++..
T Consensus 84 ~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 84 LYGRRLVLEWADSEVT 99 (107)
T ss_dssp SSSCBCEEEECCCCCC
T ss_pred ECCCEEEEEeCCCCCC
Confidence 9999999999977644
No 88
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=9.3e-19 Score=119.20 Aligned_cols=83 Identities=36% Similarity=0.557 Sum_probs=74.5
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE--------EEec---CCCCeeeEEEEEecCHHHHHHHHH
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------ILAF---KTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i~~~---~~~~~kg~afV~F~~~~~A~~a~~ 76 (245)
......+.++|||+|||.++++++ |+++|+.||.|.+ |.+. .+|.++|||||+|.+.++|.+|++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIES----VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHH----HHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 345677899999999999999999 7799999999988 7554 468899999999999999999999
Q ss_pred HHcCCccCCceEEEEEcc
Q 025973 77 KMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 77 ~l~~~~~~g~~i~v~~~~ 94 (245)
.|||..+.|+.|+|.+++
T Consensus 82 ~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 82 WFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHTTCBSSSSBCEEEECC
T ss_pred HhCCCEeCCcEEEEEecC
Confidence 999999999999999874
No 89
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=120.70 Aligned_cols=87 Identities=26% Similarity=0.461 Sum_probs=77.8
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..||+..+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETD----LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHH----HHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 344567799999999999999999 77999999999998665 36789999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 84 g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 84 HLILNVEWAKPSTN 97 (103)
T ss_dssp TEECEEEESSCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999876543
No 90
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=7.6e-19 Score=118.70 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.+..++ +|||||+|.++++|.+|+..|||..|.|++|.|.||+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 466889999999999999999999999999999999864 6899999999999999999999999999999999997
No 91
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.9e-18 Score=120.90 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
....+|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.|++|.|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 466789999999999999999999999999999999874 689999999999999999999999999999999999
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 93 ~~ 94 (115)
T 2dgo_A 93 TR 94 (115)
T ss_dssp SC
T ss_pred cC
Confidence 63
No 92
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=117.75 Aligned_cols=77 Identities=16% Similarity=0.326 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 356789999999999999999999999999999999863 689999999999999999999999999999999998
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 63
No 93
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=1.2e-18 Score=122.03 Aligned_cols=77 Identities=23% Similarity=0.452 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456789999999999999999999999999999998864 589999999999999999999999999999999998
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 103 ~~ 104 (115)
T 2cpz_A 103 RS 104 (115)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 94
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=119.69 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.|++|.|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 466789999999999999999999999999999998864 689999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 93 ~ 93 (105)
T 1x5u_A 93 S 93 (105)
T ss_dssp T
T ss_pred C
Confidence 6
No 95
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-18 Score=119.42 Aligned_cols=76 Identities=18% Similarity=0.397 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.+..+. +|||||+|.+.++|..|++.||+..|.|++|.|.||+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 456789999999999999999999999999999998754 6899999999999999999999999999999999986
No 96
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=118.43 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999998764 689999999999999999999999999999999998
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 86 ~~ 87 (99)
T 1whw_A 86 TI 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 97
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=1.4e-18 Score=119.60 Aligned_cols=85 Identities=20% Similarity=0.369 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC--
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD-- 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g-- 85 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+. +++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~ 85 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEED----VLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 85 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 3456789999999999999999 77999999999998655 367889999999999999999999999999998
Q ss_pred -ceEEEEEccccch
Q 025973 86 -KPMRIQYAKTKSD 98 (245)
Q Consensus 86 -~~i~v~~~~~~~~ 98 (245)
+.|+|.++.....
T Consensus 86 ~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 86 SSSLVVKFADTDKE 99 (105)
T ss_dssp SSCCEEEESCSSCC
T ss_pred CccEEEEECccCcc
Confidence 9999999977654
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.1e-19 Score=120.76 Aligned_cols=82 Identities=18% Similarity=0.369 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
...++++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEED----IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 345678999999999999999 77999999999998765 35889999999999999999999999999999999
Q ss_pred EEEEEcccc
Q 025973 88 MRIQYAKTK 96 (245)
Q Consensus 88 i~v~~~~~~ 96 (245)
|+|.++.++
T Consensus 95 l~V~~a~~~ 103 (106)
T 1p27_B 95 ISVDWCFVR 103 (106)
T ss_dssp CEEEESEES
T ss_pred EEEEeecCC
Confidence 999998765
No 99
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=119.68 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=71.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSL-QSLKIGQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~------~g~afv~f~~~~~A~~A~~~l-~g~~~~g~~i~v~ 241 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.+. +|||||+|.+.++|.+|+..| ||..|.|++|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 456789999999999999999999999999999998872 699999999999999999999 9999999999999
Q ss_pred EecC
Q 025973 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
||+.
T Consensus 93 ~a~~ 96 (107)
T 2cph_A 93 WADS 96 (107)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9963
No 100
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=2.2e-18 Score=118.57 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCC---eEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQ---QQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g---~~i~v~ 241 (245)
+++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..+.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 457889999999999999999999999999999999874 5899999999999999999999999997 999999
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
||+
T Consensus 93 ~a~ 95 (105)
T 2dnh_A 93 FAD 95 (105)
T ss_dssp ESC
T ss_pred ECc
Confidence 996
No 101
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.4e-19 Score=123.27 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=73.8
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC--CccCCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG--FPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~--~~~~g~ 86 (245)
....+++++|||+|||.++++++ |+++|++||.|.+|.+.++ ||||||+|.+.++|.+|++.|++ ..+.|+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~d----L~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGE----VISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHH----HHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred cccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 34567899999999999999999 6799999999999988754 79999999999999999998874 689999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
+|.|.+++.+..
T Consensus 98 ~l~V~~a~~k~~ 109 (119)
T 2ad9_A 98 PIYIQFSNHKEL 109 (119)
T ss_dssp CCEEEECSSSSC
T ss_pred EEEEEEccCCCC
Confidence 999999976544
No 102
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=123.09 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=70.4
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
++|||+|||.++++++ |+++|+.||.|..|.+..+ ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGE----LERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHH----HHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 5899999999999999 6799999999999988766 789999999999999999999999999999999999876
Q ss_pred cc
Q 025973 96 KS 97 (245)
Q Consensus 96 ~~ 97 (245)
..
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 103
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-19 Score=120.46 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCc-ccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCC--ccCCce
Q 025973 11 EISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF--PFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~--~~~g~~ 87 (245)
...++++|||+|||. ++++++ |+++|++||.|.+|++.++ +|||||+|.+.++|..|++.||+. .+.|++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~d----L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQ----LLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHH----HHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHH----HHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 456899999999999 999999 7799999999999988754 589999999999999999999864 489999
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|.|.++.....
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 1x4d_A 84 VRVHLSQKYKR 94 (102)
T ss_dssp CEEEEECCCTT
T ss_pred EEEEECCCCCC
Confidence 99999976443
No 104
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=120.36 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC------CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK------TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~------~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEET----LKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 5689999999999999999 679999999999987663 447899999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|.|.++.+...
T Consensus 79 ~l~V~~a~~~~~ 90 (98)
T 2cpf_A 79 KLEVRISERATK 90 (98)
T ss_dssp ECEEECSSCSSC
T ss_pred EEEEEEccCCCC
Confidence 999999876543
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=119.02 Aligned_cols=87 Identities=22% Similarity=0.351 Sum_probs=77.2
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCC-CCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT-LKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+..+ +.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPD----LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHH----HHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 445677889999999999999999 7799999999999877643 34789999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++.++..
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cq3_A 84 KIEVNNATARVM 95 (103)
T ss_dssp ECEEEECCSSCC
T ss_pred EEEEEEcccCCC
Confidence 999999977644
No 106
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=1.4e-18 Score=121.67 Aligned_cols=87 Identities=24% Similarity=0.405 Sum_probs=78.0
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
...+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTED----IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 445677899999999999999999 779999999999986653 6788999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++..+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 84 GRQIRTNWATRKPP 97 (115)
T ss_dssp TEECEEEESSCCCC
T ss_pred CEEEEEEEccCCCC
Confidence 99999999976644
No 107
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=122.30 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=70.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+++|||+|||..+++++|+++|+.||.|..|.+.+.+ |||||+|.+.++|..|+..|||..|.|++|.|+||+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46789999999999999999999999999999998765 8999999999999999999999999999999999963
No 108
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=2.2e-18 Score=116.79 Aligned_cols=75 Identities=13% Similarity=0.267 Sum_probs=70.1
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 168 APPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 168 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+++++|||+|||. .+++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..|||..++|++|.|+||+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 35678899999998 99999999999999999999984 59999999999999999999999999999999999973
No 109
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=120.92 Aligned_cols=86 Identities=21% Similarity=0.382 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHc------
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQ------ 79 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~------ 79 (245)
..+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEA----LGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCcCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 45567799999999999999999 779999999999998774 57789999999999999999999999
Q ss_pred CCccCCceEEEEEccccch
Q 025973 80 GFPFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 80 ~~~~~g~~i~v~~~~~~~~ 98 (245)
+..+.|+.|+|.++.++..
T Consensus 85 ~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CEESSSCEEEEECCCCCCC
T ss_pred CcEEcCEEEEEEECCCCcc
Confidence 9999999999999976644
No 110
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=119.27 Aligned_cols=77 Identities=26% Similarity=0.413 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.++++|..|+..|||..|.|++|+|.||
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999998863 689999999999999999999999999999999999
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 111
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=119.64 Aligned_cols=77 Identities=16% Similarity=0.318 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..|.|++|+|.+|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456789999999999999999999999999999998753 689999999999999999999999999999999998
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 73
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=115.56 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=69.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..|||..+.|++|+|.||+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 466789999999999999999999999999999998 58999999999999999999999999999999999863
No 113
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=9.5e-19 Score=122.50 Aligned_cols=86 Identities=24% Similarity=0.404 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
..+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQD----LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHH----HHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcCCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34456789999999999999999 679999999998876543 67899999999999999999999999999999
Q ss_pred ceEEEEEccccch
Q 025973 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.++..
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 9999999876644
No 114
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=119.23 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456789999999999999999999999999999998762 689999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 90 ~ 90 (102)
T 2cqb_A 90 K 90 (102)
T ss_dssp C
T ss_pred C
Confidence 6
No 115
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=119.00 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356789999999999999999999999999999998763 689999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 91 ~ 91 (103)
T 2dnm_A 91 R 91 (103)
T ss_dssp S
T ss_pred C
Confidence 7
No 116
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=9.5e-19 Score=118.21 Aligned_cols=82 Identities=22% Similarity=0.432 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
....+.++|||+|||..+++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEI----LYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 4466789999999999999999 779999999999986653 5788999999999999999999999999999999
Q ss_pred EEEEEccc
Q 025973 88 MRIQYAKT 95 (245)
Q Consensus 88 i~v~~~~~ 95 (245)
|+|.+++.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999753
No 117
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=8.4e-19 Score=122.85 Aligned_cols=84 Identities=32% Similarity=0.483 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKM----LKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHH----HHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345679999999999999999 679999999999886654 67889999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
.|.+++....
T Consensus 79 ~V~~a~~~~~ 88 (116)
T 2fy1_A 79 KVEQAKKPSF 88 (116)
T ss_dssp EEEECCCSSC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 118
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.1e-19 Score=122.90 Aligned_cols=76 Identities=24% Similarity=0.414 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
+.+++|||+|||..+++++|+++|+.||.|.++.+...+ |||||+|.+.++|..|+..|||..++|++|+|.||+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK-GCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 356789999999999999999999999999999998665 9999999999999999999999999999999999973
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1.5e-18 Score=119.90 Aligned_cols=73 Identities=32% Similarity=0.530 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..|||..|+|++|.|.||+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 466789999999999999999999999999999998 5999999999999999999999999999999999986
No 120
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-18 Score=116.44 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+. ||+..|.|++|.|.||
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999998763 6899999999999999998 9999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 87 ~ 87 (99)
T 2dgs_A 87 E 87 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 121
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.3e-19 Score=119.72 Aligned_cols=85 Identities=16% Similarity=0.339 Sum_probs=75.8
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeE-EEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL-EILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~-~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
++....++++|||+|||.++++++ |+++|+.||.|. .|.+. .++.++|||||+|.+.++|.+|++.||+..+
T Consensus 2 ss~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 2 SSGSSGMAASLWMGDLEPYMDENF----ISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp CCCCCSSSSEEEECSCCTTCCHHH----HHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CCCCCCCccEEEEeCCCCCCCHHH----HHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 345567899999999999999999 679999999998 87654 3678999999999999999999999999999
Q ss_pred CCce----EEEEEcccc
Q 025973 84 YDKP----MRIQYAKTK 96 (245)
Q Consensus 84 ~g~~----i~v~~~~~~ 96 (245)
.|+. |+|.|+.+.
T Consensus 78 ~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 78 PGATPAKRFKLNYATYS 94 (99)
T ss_dssp SSCSSCEECCEEETTCC
T ss_pred CCCCcceeEEEeecCCC
Confidence 9999 999998764
No 122
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.6e-18 Score=119.76 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=74.2
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.....++++|||+|||..+++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 45667899999999999999999 67999999999987654 4788899999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|+|.++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 99999975
No 123
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=117.50 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC---CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA---KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~---~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.+ .+|||||+|.+.++|..|+..|||..|.|++|.|.||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 35678999999999999999999999999999999975 26899999999999999999999999999999999986
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=116.87 Aligned_cols=82 Identities=27% Similarity=0.539 Sum_probs=74.3
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC--Cc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~--g~ 86 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+... +|||||+|.+.++|.+|++.||+..+. |+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAA----LAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHH----HHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 34567789999999999999999 7799999999999988754 789999999999999999999999999 99
Q ss_pred eEEEEEccccc
Q 025973 87 PMRIQYAKTKS 97 (245)
Q Consensus 87 ~i~v~~~~~~~ 97 (245)
.|+|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (97)
T 1why_A 84 RLRVDFAKSGP 94 (97)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 99999997753
No 125
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=1.3e-19 Score=130.31 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.||+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45679999999999999999999999999999998753 6899999999999999999999999999999999997
No 126
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.3e-19 Score=121.81 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=76.3
Q ss_pred ccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.......+.++|||+|||.++++++ |+++|+.||.|..|.+.. .+.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPD----LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHH----HHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCccCCCCCCEEEEECCCCcCCHHH----HHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3455677889999999999999999 779999999999987764 34578999999999999999999999999999
Q ss_pred ceEEEEEcccc
Q 025973 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
+.|+|.++.++
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999998765
No 127
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.6e-18 Score=120.31 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
....++++|||+|||..+++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDE----IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3456678999999999999999 779999999999997763 678899999999999999999999999999999
Q ss_pred eEEEEEccccc
Q 025973 87 PMRIQYAKTKS 97 (245)
Q Consensus 87 ~i~v~~~~~~~ 97 (245)
.|+|.++.++.
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 99999987653
No 128
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=123.21 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEecC--CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEA--KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~v~l~~~--~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+++++|||+|||..+++++|+ ++|+.||.|.+|.+..+ .+|||||+|.+.++|..|+..|||..|.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 457789999999999999876 79999999999988763 379999999999999999999999999999999999
Q ss_pred ecC
Q 025973 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 973
No 129
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2e-18 Score=115.89 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~---~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.+..+. +|||||+|.+.++|..|+..|||..|.|++|.|.||+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 356789999999999999999999999999999998742 68999999999999999999999999999999999863
No 130
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=118.19 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=78.3
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
......+.++|||+|||.++++++ |+++|+.|+.|..+....++.++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 8 PNARSQPSKTLFVKGLSEDTTEET----LKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp TSSSSCCCSSEEEECCCTTCCHHH----HHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCccCHHH----HHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 445677899999999999999999 6699999987777777778999999999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.+++++..
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 VTLDWAKPKGE 94 (102)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEecCCCC
Confidence 99999987654
No 131
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.5e-18 Score=119.64 Aligned_cols=87 Identities=24% Similarity=0.421 Sum_probs=77.2
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCcc-
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF- 83 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~- 83 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKD----LKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL 81 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHH----HHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 345567789999999999999999 679999999999998775 577899999999999999999999999887
Q ss_pred --CCceEEEEEccccch
Q 025973 84 --YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 --~g~~i~v~~~~~~~~ 98 (245)
.|+.|+|.++.....
T Consensus 82 ~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 82 PGMNRPIQVKPADSESR 98 (106)
T ss_dssp TTCSSCCEEEECCCCSC
T ss_pred CCCCceEEEEECCcccc
Confidence 889999999876543
No 132
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.2e-18 Score=124.31 Aligned_cols=85 Identities=22% Similarity=0.410 Sum_probs=76.7
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
..+..++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERD----LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHH----HHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 779999999999987764 57889999999999999999999999999999
Q ss_pred ceEEEEEccccc
Q 025973 86 KPMRIQYAKTKS 97 (245)
Q Consensus 86 ~~i~v~~~~~~~ 97 (245)
+.|.|.++.++.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 999999987653
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=2.5e-18 Score=116.57 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=71.2
Q ss_pred ccCCCCCCCCeEEEcCCCc-ccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 7 NQGNEISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
......+++++|||+|||. ++++++ |+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~----L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKED----LFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHH----HHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHH----HHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3445677899999999998 999999 77999999999999884 6899999999999999999999999999
Q ss_pred ceEEEEEcccc
Q 025973 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
+.|+|.+++..
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998764
No 134
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=116.00 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+. +|||||+|.+.++|.+|+..||+..+.|+.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 73 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQE----IRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN 73 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHH----HHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE
Confidence 3467889999999999999999 77999999999999876 58999999999999999999999999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.++..
T Consensus 74 v~~a~~~~~ 82 (90)
T 2dnq_A 74 VEASKNKSK 82 (90)
T ss_dssp EECSSCCCC
T ss_pred EEECCCCCC
Confidence 999876644
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.1e-18 Score=117.36 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCC-----eEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-----QQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g-----~~i~v~~ak 244 (245)
...+|||+|||..+++++|+++|+.||.|..|.++.+ |||||+|.+.++|..|++.|||..|.| ++|.|.+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4678999999999999999999999999999999987 899999999999999999999999999 999999986
No 136
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.2e-18 Score=114.45 Aligned_cols=81 Identities=16% Similarity=0.323 Sum_probs=70.8
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++ +++..+.
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 78 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKD----LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD 78 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC
Confidence 345567889999999999999999 67999999999998665 368899999999999999999997 6888899
Q ss_pred CceEEEEEc
Q 025973 85 DKPMRIQYA 93 (245)
Q Consensus 85 g~~i~v~~~ 93 (245)
|+.|.|.+|
T Consensus 79 g~~i~v~~A 87 (87)
T 3s7r_A 79 GRVIDPKKA 87 (87)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 999999875
No 137
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=117.31 Aligned_cols=80 Identities=16% Similarity=0.347 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCC--eEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCC----c
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT--ILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGF----P 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~--v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~----~ 82 (245)
...=.+|||+|||+.+|+++ |+++|++||. |.+|++. .+|.+||||||+|.+.++|.+|++.||+. .
T Consensus 6 ~~~m~tlfV~nL~~~~tee~----L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDS----IMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHH----HHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CCccCEEEEeCCCCcCCHHH----HHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 44557899999999999999 7799999996 4466554 46889999999999999999999999996 4
Q ss_pred cCCceEEEEEccc
Q 025973 83 FYDKPMRIQYAKT 95 (245)
Q Consensus 83 ~~g~~i~v~~~~~ 95 (245)
+.|+.|.|.||+.
T Consensus 82 i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 82 IDGKTIGVDFAKS 94 (95)
T ss_dssp ETTEEEEEEECCC
T ss_pred ECCEEEEEEEccC
Confidence 7899999999864
No 138
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=4.4e-18 Score=117.48 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++.+|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.|++|.|+||+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 467889999999999999999999999999999999763 6899999999999999999999999999999999985
No 139
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=119.50 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
+..++|||+|||..+++++|+++|+.||.|..|.++.++ |||||+|.+.++|..|+..|||..|.|++|.|.||+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 356789999999999999999999999999999999884 9999999999999999999999999999999999873
No 140
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.1e-18 Score=117.79 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 456789999999999999999999999999999999864 5899999999999999999999999999999999986
No 141
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=117.39 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEV-RMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v-~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++++|||+|||..+++++|+++|+.||.|..+ .++.++ +|||||+|.++++|..|+..|||..|.|++|.|.||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56789999999999999999999999999998 888762 689999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 84 ~ 84 (96)
T 1x5t_A 84 F 84 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 142
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=3.2e-18 Score=118.78 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 466889999999999999999999999999999998764 689999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 104 ~ 104 (110)
T 1oo0_B 104 F 104 (110)
T ss_dssp E
T ss_pred c
Confidence 5
No 143
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=119.44 Aligned_cols=82 Identities=30% Similarity=0.521 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE-EecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i-~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.++++|||+|||.++++++ |+++|+.||.|..| .+.. ++.++|||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKL----LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHH----HHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 5689999999999999999 77999999999877 6554 67789999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.++..
T Consensus 79 ~v~~a~~~~~ 88 (96)
T 1x5t_A 79 TVSYAFKKDS 88 (96)
T ss_dssp EEEESCCCCC
T ss_pred EEEEecccCC
Confidence 9999976543
No 144
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=118.36 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+|++|.|.||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 356789999999999999999999999999999998764 589999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 101 ~ 101 (106)
T 1p27_B 101 F 101 (106)
T ss_dssp E
T ss_pred c
Confidence 6
No 145
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=118.67 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=74.8
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
..+...+.++|||+|||.++++++ |+++|+.||.|. +....++.++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEET----LQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHH----HHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 445567899999999999999999 679999999984 333367889999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025973 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++.++.
T Consensus 83 l~v~~a~~~~ 92 (101)
T 2fc9_A 83 IRLELQGPRG 92 (101)
T ss_dssp EEEEECSSCC
T ss_pred EEEEEcCCCC
Confidence 9999987654
No 146
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=2.9e-18 Score=121.05 Aligned_cols=72 Identities=25% Similarity=0.297 Sum_probs=68.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEEec
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI-AFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAK 244 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~-afv~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~ak 244 (245)
.|||+||+..+|+++|+++|+.||.|.+|.++...+|+ |||+|.+.++|..|++.|||..|.| ++|+|+|||
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 46799999999999999999999999999998776787 9999999999999999999999988 999999997
No 147
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=3e-18 Score=127.63 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=71.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|..+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356789999999999999999999999999999999863 699999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 150 ~ 150 (165)
T 1rk8_A 150 F 150 (165)
T ss_dssp E
T ss_pred c
Confidence 5
No 148
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=118.07 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCC----CCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT----LKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~----~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.+..+.++|||+|||.++++++ |+++|+.|| |..|.+..+ +.++|||||+|.+.++|.+|+ .||+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEES----IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHH----HHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCEEEEeCCCCcCCHHH----HHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 3456789999999999999999 679999999 999987753 788999999999999999999 799999999
Q ss_pred ceEEEEEccccch
Q 025973 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|.|.++.++..
T Consensus 84 ~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 KRIRVDVADQAQD 96 (104)
T ss_dssp EECEEEECCCCCC
T ss_pred cEEEEEEccCCCC
Confidence 9999999977544
No 149
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=116.77 Aligned_cols=76 Identities=28% Similarity=0.415 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
++++|||+|||..+++++|+++|+.||.|..|.+..++ +|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 56779999999999999999999999999999998632 4899999999999999999999999999999999
Q ss_pred EecC
Q 025973 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
||+.
T Consensus 84 ~a~~ 87 (98)
T 2cpf_A 84 ISER 87 (98)
T ss_dssp CSSC
T ss_pred EccC
Confidence 9863
No 150
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.7e-18 Score=123.44 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.|++|.|.||
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 466789999999999999999999999999999998753 689999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 124 ~ 124 (129)
T 2kxn_B 124 I 124 (129)
T ss_dssp S
T ss_pred c
Confidence 6
No 151
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.6e-19 Score=119.06 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=66.0
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccC--CeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG--TILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
.+|||+|||.++++++ |+++|+.|| .|.+|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~----l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDED----LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHH----HHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHH----HHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 5799999999999999 669999999 88887544 37899999999999999999999999999999999999
Q ss_pred EEccccch
Q 025973 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.+...
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99876543
No 152
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=120.54 Aligned_cols=84 Identities=13% Similarity=0.281 Sum_probs=74.8
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHH---HhhcccCCeEEEEecCCC------CeeeEEEEEecCHHHHHHHHHHHcC
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLH---AVFKQFGTILEILAFKTL------KHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~---~~F~~~G~v~~i~~~~~~------~~kg~afV~F~~~~~A~~a~~~l~~ 80 (245)
......++|||+|||.++++++ |. ++|++||.|..|.+.++. .++|||||+|.+.++|.+|++.||+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~----l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng 85 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPE----VLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN 85 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHH----HHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccCCCEEEEECCCCCCCHHH----HHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC
Confidence 3456689999999999999999 77 999999999998776532 4669999999999999999999999
Q ss_pred CccCCceEEEEEccccc
Q 025973 81 FPFYDKPMRIQYAKTKS 97 (245)
Q Consensus 81 ~~~~g~~i~v~~~~~~~ 97 (245)
..+.|+.|+|.++.++.
T Consensus 86 ~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 86 VVVDGRTLKASLGTTKY 102 (111)
T ss_dssp EEETTEEEEEESCCCCS
T ss_pred CEECCEEEEEEeccccc
Confidence 99999999999998764
No 153
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=118.78 Aligned_cols=84 Identities=23% Similarity=0.378 Sum_probs=75.2
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.....++++|||+|||.++++++ |+++|+.||.|..|.+. +++.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKK----LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 34566789999999999999999 67999999999987654 4678899999999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025973 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|.|.++...
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 9999998653
No 154
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=2.8e-18 Score=132.07 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=72.8
Q ss_pred CCccEEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVP-HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~-~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+++++|||+||| ..+++++|+++|+.||.|.+|+++++++|||||+|.++++|..|++.|||..+.|++|+|.||+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 356789999999 8999999999999999999999999888999999999999999999999999999999999986
No 155
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=119.53 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEecCC--------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 025973 169 PPNNILFVQNVPHDTTPMALQ---MFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~g~v~~v~l~~~~--------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~ 237 (245)
...++|||+|||..+++++|+ ++|+.||.|..|.++.++ +|||||+|.++++|.+|+..|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999 999999999999998754 389999999999999999999999999999
Q ss_pred EEEEEec
Q 025973 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|.||+
T Consensus 93 l~V~~a~ 99 (111)
T 2cpi_A 93 LKASLGT 99 (111)
T ss_dssp EEEESCC
T ss_pred EEEEecc
Confidence 9999986
No 156
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=113.02 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=69.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC------CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA------KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~------~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++|||+|||..+++++|+++|+.||.|..+.++.+ .+|+|||+|.+.++|..|+..|||..++|++|.|++|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 467999999999999999999999999999999874 36899999999999999999999999999999999986
No 157
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=120.52 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=72.7
Q ss_pred CCCCCCCeEEEcCCCcc-cChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC--CccCCc
Q 025973 10 NEISPNNTIYINNLNEK-VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG--FPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~-~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~--~~~~g~ 86 (245)
.+..++++|||+|||.+ +++++ |+++|++||.|.+|++.+ +||||||+|.+.++|..|++.|++ ..+.|+
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~----L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSA----VLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHH----HHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred ccCCCCCEEEEeCCCCccCCHHH----HHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 45778999999999998 99999 779999999999998864 479999999999999999998864 568999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++..+..
T Consensus 93 ~l~V~~a~~~~~ 104 (112)
T 1x4f_A 93 CVKVDLSEKYKK 104 (112)
T ss_dssp CCEEEEECSCSS
T ss_pred EEEEEECccccc
Confidence 999999876544
No 158
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=2e-18 Score=119.39 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEec-CCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVE-AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~v~l~~-~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+++++|+++|+.|| .|..+.+.. ..+|||||+|.+.++|..|++.|||..|.|++|+|.+|+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 456899999999999999999999999 899999864 347999999999999999999999999999999999986
No 159
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=113.20 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.+.+ +||||+|.+.++|..|+..|||..|.|++|.|.||+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS---SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4667899999999999999999999999999999973 599999999999999999999999999999999986
No 160
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-18 Score=117.40 Aligned_cols=76 Identities=26% Similarity=0.391 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhC------CCeeCCeE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQ------SLKIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~------g~~~~g~~ 237 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|| |..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 356789999999999999999999999999999999763 6899999999999999999999 99999999
Q ss_pred EEEEEec
Q 025973 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|.|.||+
T Consensus 93 l~v~~a~ 99 (111)
T 1x4h_A 93 LKVDLAV 99 (111)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999986
No 161
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.8e-18 Score=121.57 Aligned_cols=81 Identities=25% Similarity=0.383 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTD----LASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHH----HHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3456689999999999999999 779999999999997764 578899999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|+|.+++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999874
No 162
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=118.88 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
.+....++|||+|||.++++++ |+++|+.||.|.+|.+.. .|.++|||||+|.+.++|.+|+. +++..+.|+.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~----L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDD----IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHH----HHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred cccCCCCEEEEECCCCCCCHHH----HHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 4456779999999999999999 669999999999987664 47789999999999999999999 8999999999
Q ss_pred EEEEEcccc
Q 025973 88 MRIQYAKTK 96 (245)
Q Consensus 88 i~v~~~~~~ 96 (245)
|.|.++...
T Consensus 81 l~V~~~~~~ 89 (103)
T 1s79_A 81 LLILFKDDY 89 (103)
T ss_dssp CEEEEHHHH
T ss_pred EEEEEchHH
Confidence 999987553
No 163
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=118.90 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcc-cCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCc-cC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQ-FGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFP-FY 84 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~-~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~-~~ 84 (245)
..+..+.++|||+|||.++++++ |+++|+. ||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+.. +.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGM----LYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHH----HHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCCCCCCcEEEEeCCCCCCCHHH----HHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 34567889999999999999999 7799999 99999886543 78899999999999999999999999999 99
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 79 g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 79 SKPVRLSVAIPKAS 92 (104)
T ss_dssp SSCCCCCBCCCCCS
T ss_pred CEeEEEEEccCCCc
Confidence 99999999876543
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=119.46 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCccEEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCee-----CCeEEEEE
Q 025973 169 PPNNILFV--QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-----GQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v--~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~-----~g~~i~v~ 241 (245)
.++++||| +||+..+++++|+++|++||.|.+|.+..++ |||||+|.+.++|..|++.|||..+ .|++|.|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-gfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-PYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-SCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 35678999 6699999999999999999999999988774 9999999999999999999999988 69999999
Q ss_pred EecC
Q 025973 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
||+.
T Consensus 102 ~a~~ 105 (114)
T 2cq2_A 102 FVEK 105 (114)
T ss_dssp EESC
T ss_pred eccc
Confidence 9974
No 165
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=9.9e-19 Score=119.23 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=70.5
Q ss_pred CccEEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCC-eE
Q 025973 170 PNNILFVQNVPH------DTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQ 237 (245)
Q Consensus 170 ~~~~l~v~nl~~------~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g-~~ 237 (245)
.+++|||+|||. .+++++|+++|+.||.|.+|.++.++ +|||||+|.++++|.+|+..|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 99999999999999999999998754 6999999999999999999999999999 99
Q ss_pred EEEEEec
Q 025973 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|.+|+
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9999985
No 166
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=116.80 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=68.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+..++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|.+|++.|||..|.|++|+|.+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456789999999999999999999999999766666532 699999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 6
No 167
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=114.46 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCC---CC-eeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT---LK-HKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~---~~-~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
...++|||+|||.++++++ |+++|+.||.|..|.+..+ +. ++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDH----IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCCCEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 3568999999999999999 6799999999999877643 23 78999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025973 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.++.+.
T Consensus 78 ~v~~a~~~ 85 (88)
T 4a8x_A 78 TATAVLAP 85 (88)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99998654
No 168
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=118.90 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCccc------ChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 12 ISPNNTIYINNLNEKV------KIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~------~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
...+++|||+|||..+ ++++ |+++|+.||.|..|.+.+ +|.++|||||+|.+.++|.+|+..|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~----l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNV----IHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHH----HHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHH----HHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4457899999999999 6788 779999999999997764 7889999999999999999999999999999
Q ss_pred Cc-eEEEEEcccc
Q 025973 85 DK-PMRIQYAKTK 96 (245)
Q Consensus 85 g~-~i~v~~~~~~ 96 (245)
|+ .|+|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998653
No 169
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=113.87 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQF--PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.++++|||+|||..+++++|+++|+.| |.|..+.+. +|||||+|.+.++|..|+..|||..|.|++|.|.||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 467889999999999999999999999 999998875 48999999999999999999999999999999999873
No 170
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=113.78 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=72.4
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHH-cCCccCCc
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKM-QGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l-~~~~~~g~ 86 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..| ++..+.|+
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~----l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETD----LRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHH----HHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHH----HHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 445567789999999999999999 679999999999998875 4799999999999999999998 99999999
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|+|.|++
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 171
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=117.95 Aligned_cols=77 Identities=26% Similarity=0.314 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFK--------EVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--------~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g 235 (245)
..+++|||+|||..+++++|+++|+.||.|. .|.++.++ +|||||+|.+.++|..|+..|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4567899999999999999999999999998 68988763 6899999999999999999999999999
Q ss_pred eEEEEEEecC
Q 025973 236 QQLLITYAKK 245 (245)
Q Consensus 236 ~~i~v~~ak~ 245 (245)
++|+|.||+.
T Consensus 93 ~~l~V~~a~~ 102 (113)
T 2cpe_A 93 SKLKVSLARK 102 (113)
T ss_dssp EECEEECSSC
T ss_pred CEEEEEECCC
Confidence 9999999873
No 172
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=116.95 Aligned_cols=84 Identities=17% Similarity=0.420 Sum_probs=75.6
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+.++ +|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEE----MRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHH----HHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHH----HHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 445567889999999999999999 7799999999999988754 699999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpj_A 81 LRVRFACHSAS 91 (99)
T ss_dssp CEEEESSCCSC
T ss_pred EEEEEcCCCCC
Confidence 99999977544
No 173
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=5.5e-18 Score=118.56 Aligned_cols=76 Identities=24% Similarity=0.481 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.+. +|||||+|.+.++|..|+..|||..+.|+.|.|.||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 356789999999999999999999999999999998754 6899999999999999999999999999999999986
No 174
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=119.32 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
..++|||+|||..+++++|+++|+.||.|..|.+..++ +|||||+|.+.++|..|+..|||..|.|++|.|.||+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 45689999999999999999999999999999999864 68999999999999999999999999999999999973
No 175
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.7e-18 Score=119.80 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccC-CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..+...++|||+|||.++++++ |+++|+.|| .|..+.+.. +.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~d----L~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQD----LKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHH----HHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHH----HHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3466788999999999999999 669999999 898887753 3578999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025973 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
.|.++...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99998654
No 176
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=118.29 Aligned_cols=83 Identities=19% Similarity=0.301 Sum_probs=69.5
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
........++|||+|||.++++++ |+++|+.|| |.+|.+.. +|+++|||||+|.+.++|.+|+ .|||..+
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~ 85 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEES----IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 85 (100)
T ss_dssp --------CEEEESCCSSCCSSSH----HHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHH----HHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE
Confidence 334566789999999999999999 679999999 99997764 5778999999999999999999 7999999
Q ss_pred CCceEEEEEcccc
Q 025973 84 YDKPMRIQYAKTK 96 (245)
Q Consensus 84 ~g~~i~v~~~~~~ 96 (245)
.|+.|+|.++.++
T Consensus 86 ~g~~l~V~~a~~~ 98 (100)
T 2j76_E 86 GNRRIRVDVADQA 98 (100)
T ss_dssp TTBCCCCEECCCS
T ss_pred CCeEEEEEeccCC
Confidence 9999999998764
No 177
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.2e-17 Score=114.44 Aligned_cols=74 Identities=23% Similarity=0.472 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.|| |..|.++.++ +|||||+|.+.++|..|+ .|||..|.|++|.|.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3567899999999999999999999997 9999999864 689999999999999999 89999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 91 ~ 91 (103)
T 2dng_A 91 E 91 (103)
T ss_dssp C
T ss_pred c
Confidence 6
No 178
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=114.52 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=65.6
Q ss_pred CCeEEEcCCCccc------ChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc-
Q 025973 15 NNTIYINNLNEKV------KIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK- 86 (245)
Q Consensus 15 ~~~l~V~nLp~~~------~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~- 86 (245)
+++|||+|||..+ ++++ |+++|+.||.|.+|.+.+ +|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~----l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNV----IHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHH----HHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHH----HHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 4799999999999 6688 779999999999997764 788999999999999999999999999999999
Q ss_pred eEEE
Q 025973 87 PMRI 90 (245)
Q Consensus 87 ~i~v 90 (245)
.|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 8876
No 179
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=4.7e-18 Score=117.17 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=71.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCee---CCeEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKI---GQQQLLI 240 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~---~g~~i~v 240 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..+ .|++|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 466789999999999999999999999999999998863 68999999999999999999999987 8999999
Q ss_pred EEec
Q 025973 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
.||+
T Consensus 91 ~~a~ 94 (106)
T 2dgp_A 91 KPAD 94 (106)
T ss_dssp EECC
T ss_pred EECC
Confidence 9986
No 180
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=119.58 Aligned_cols=85 Identities=35% Similarity=0.530 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeE--------EEEec---CCCCeeeEEEEEecCHHHHHHHHHHH
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL--------EILAF---KTLKHKGQAWLVFKDVASATAAVEKM 78 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~--------~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l 78 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|. .|.+. .++.++|||||+|.+.++|.+|++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDD----LADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHH----HHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEcCCCCCCCHHH----HHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 4567789999999999999999 679999999998 46555 46788999999999999999999999
Q ss_pred cCCccCCceEEEEEccccch
Q 025973 79 QGFPFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 79 ~~~~~~g~~i~v~~~~~~~~ 98 (245)
|+..+.|+.|+|.++..+..
T Consensus 86 ~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 86 DGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TTCEETTEECEEECSSCCCC
T ss_pred CCCccCCCEEEEEECCCCCC
Confidence 99999999999999877654
No 181
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=115.03 Aligned_cols=76 Identities=25% Similarity=0.411 Sum_probs=68.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
..+++|||+|||..+++++|+++|+.||.|. +.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.+|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3467899999999999999999999999996 5555443 79999999999999999999999999999999999863
No 182
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=120.07 Aligned_cols=82 Identities=20% Similarity=0.425 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.++|||+|||..+++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQ----LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHH----HHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCccEEEEeCCCCcCCHHH----HHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4568999999999999999 77999999999888655 4688899999999999999999999999999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999877654
No 183
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-17 Score=119.70 Aligned_cols=77 Identities=21% Similarity=0.378 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
...++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999998763 689999999999999999999999999999999998
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 184
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=116.29 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCee-EEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeE----E
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFK-EVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ----L 238 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~-~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~----i 238 (245)
.++++|||+|||..+++++|+++|+.||.|. .+.++.++ +|||||+|.+.++|..|+..|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567899999999999999999999999999 99999864 589999999999999999999999999999 9
Q ss_pred EEEEec
Q 025973 239 LITYAK 244 (245)
Q Consensus 239 ~v~~ak 244 (245)
+|.||+
T Consensus 87 ~v~~a~ 92 (99)
T 2div_A 87 KLNYAT 92 (99)
T ss_dssp CEEETT
T ss_pred EEeecC
Confidence 999986
No 185
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=5.4e-18 Score=113.04 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=69.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|.+|+ .+||..|.|++|.|.+|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999998764 789999999999999999 899999999999999986
No 186
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=117.10 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
..+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|.+|+..+|+ .|.|++|.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3466889999999999999999999999999999999863 68999999999999999999998 89999999999
Q ss_pred ec
Q 025973 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 93 a~ 94 (116)
T 2cqd_A 93 AY 94 (116)
T ss_dssp ST
T ss_pred cc
Confidence 85
No 187
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=1.3e-17 Score=115.71 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..+++|||+|||.. +++++|+++|+.||.|..|.+ .+|||||+|.+.++|..|+..|||..|.|++|.|.||+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 35578999999999 999999999999999999998 35899999999999999999999999999999999996
No 188
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=114.74 Aligned_cols=74 Identities=24% Similarity=0.447 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
.+..+|||+|||..+++++|+++|+.|| |..|.++.++ +|||||+|.+.++|.+|+ .|||..|.|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3567899999999999999999999999 9999998753 689999999999999999 8999999999999999
Q ss_pred ec
Q 025973 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 91 a~ 92 (104)
T 1wi8_A 91 AD 92 (104)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 189
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2e-18 Score=116.80 Aligned_cols=82 Identities=20% Similarity=0.366 Sum_probs=70.5
Q ss_pred cCCCCCCCCeEEEcCCCc-ccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 8 QGNEISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.....+++++|||+|||. .+++++ |+++|+.||.|..|.+. +|||||+|.+.++|.+|+..||+..+.|+
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~~t~~~----l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 3 EMHNIPPKSRLFIGNLPLKNVSKED----LFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp ------CCEEEEEESSTTSCCCHHH----HHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred ccccCCCCCEEEEeCCCcccCCHHH----HHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 345577899999999998 999999 77999999999999874 68999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++.....
T Consensus 74 ~l~V~~a~~~~~ 85 (96)
T 2kvi_A 74 KLILEVSSSNAR 85 (96)
T ss_dssp TBCEEEEECCCC
T ss_pred EEEEEEcCcCCC
Confidence 999999876543
No 190
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=3.6e-18 Score=115.80 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=71.0
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEecC--CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEA--KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~v~l~~~--~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+++++|||+|||..+++++|+ ++|+.||.|..|.+... .+|||||+|.+.++|..|+..|||..++|++|.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 467889999999999999999 99999999999998752 258999999999999999999999999999999999
Q ss_pred ecC
Q 025973 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 86 a~~ 88 (97)
T 1nu4_A 86 AKT 88 (97)
T ss_dssp CSS
T ss_pred ccC
Confidence 963
No 191
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=117.30 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
....+.++|||+|||..+++++ |+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||+..+.|+.|.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~----l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDE----LKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHH----HHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4456789999999999999999 67999999998777 56788999999999999999999999999999999999
Q ss_pred EEEccccc
Q 025973 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|.++.++.
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99987653
No 192
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.2e-18 Score=112.70 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.+++ +||||+|.+.++|..|+..|||..+.|++|.|.||+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK---DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS---SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3567899999999999999999999999999999984 5999999999999999999999999999999999863
No 193
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=6.1e-18 Score=115.97 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
..+..+.++|||+|||.++++++ |+++|+.|| |..|.+.. ++.++|||||+|.+.++|.+|+ .||+..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGD----IDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHH----HHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCeEEEEeCCCCCCCHHH----HHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 34566789999999999999999 679999997 98886653 5789999999999999999999 799999999
Q ss_pred ceEEEEEccccch
Q 025973 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.+...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 RSLRVDIAEGRKQ 95 (103)
T ss_dssp EECEEEECCCCCC
T ss_pred eEEEEEEecCCCC
Confidence 9999999876543
No 194
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=9.3e-19 Score=117.06 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=66.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFP--GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+|||+|||..+++++|+++|+.|| .|.++.++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3599999999999999999999999 99999998864 6899999999999999999999999999999999885
No 195
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=5.9e-18 Score=120.36 Aligned_cols=85 Identities=18% Similarity=0.339 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
....++++|||+|||..+++++ |.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEED----IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3456688999999999999999 669999999999997653 678899999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|.|.++..+..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999876543
No 196
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=7e-18 Score=115.67 Aligned_cols=73 Identities=26% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++ ++||||+|.+.++|.+|+..|||..|.|++|.|.||+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 356789999999999999999999999999999987 4799999999999999999999999999999999986
No 197
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.8e-19 Score=115.66 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQD----LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHH----HHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 46789999999999999999 779999999999987654 57789999999999999999999999999999999
Q ss_pred EEEEcc
Q 025973 89 RIQYAK 94 (245)
Q Consensus 89 ~v~~~~ 94 (245)
++.++.
T Consensus 78 ~~~~~~ 83 (85)
T 1x4e_A 78 KQSGPS 83 (85)
T ss_dssp CSSCCC
T ss_pred eecCCC
Confidence 887653
No 198
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=118.31 Aligned_cols=74 Identities=20% Similarity=0.430 Sum_probs=69.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+ .|||..|.|++|.|.||+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 45689999999999999999999999999999998653 689999999999999999 899999999999999985
No 199
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=7.3e-18 Score=121.96 Aligned_cols=85 Identities=21% Similarity=0.395 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|.+|.+. .++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQ----LRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHH----HHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4456689999999999999999 67999999999998665 3678899999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++.....
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999976544
No 200
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=6.5e-18 Score=119.79 Aligned_cols=85 Identities=24% Similarity=0.394 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.....++++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 29 ~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 29 GEGVETGAKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp CCCCSSCEEEEEESCCSSCCHHH----HHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 34567789999999999999999 679999999999886654 677899999999999999999999999999999
Q ss_pred eEEEEEccccc
Q 025973 87 PMRIQYAKTKS 97 (245)
Q Consensus 87 ~i~v~~~~~~~ 97 (245)
.|+|.++....
T Consensus 105 ~l~V~~a~~~~ 115 (124)
T 2kt5_A 105 PMDIQLVASQI 115 (124)
T ss_dssp EEEEEEECCTT
T ss_pred EEEEEEeCCCC
Confidence 99999987643
No 201
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=117.09 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=69.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+|+++|+++|+.||.|.+|.++.++ +|||||+|.++++|..|+. ++|..|.|++|.|.+++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45789999999999999999999999999999999853 7999999999999999999 89999999999999874
No 202
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.3e-18 Score=114.23 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=73.7
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE---EEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~---i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.......++|||+|||.++++++ |+++|+.||.|.. +....++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~----l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 9 SSGKPGPTIIKVQNMPFTVSIDE----ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp CCCCCSSEEEEEESCCTTCCHHH----HHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 34456679999999999999999 6699999999864 3445678899999999999999999999999999999
Q ss_pred ceEEEEEcccc
Q 025973 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
+.|+|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (98)
T 2cqp_A 85 RKVKLVLGSGP 95 (98)
T ss_dssp EECEEEESSCS
T ss_pred eEEEEEEcCCC
Confidence 99999998653
No 203
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=6.3e-18 Score=120.22 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++.+|||+|||..+++++|.++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 356789999999999999999999999999999998764 789999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 100 ~ 100 (126)
T 3ex7_B 100 F 100 (126)
T ss_dssp E
T ss_pred c
Confidence 5
No 204
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=117.90 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
++|||+|||..+++++|+++|+.||.|..+.++.+.+|||||+|.+.++|..|+..|||..+.|++|.|.||+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 3699999999999999999999999999999998866999999999999999999999999999999999986
No 205
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=118.00 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
.....++|||+|||.++++++ |+.+|+.||.|..|.+..+ +|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQL----MRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHH----HHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 456789999999999999999 6799999999999988765 799999999999999999999999999999999
Q ss_pred EEccccch
Q 025973 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.|+++...
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99977644
No 206
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.8e-18 Score=114.96 Aligned_cols=73 Identities=16% Similarity=0.351 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+++++|||+|||. .+++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..|||..+.|++|.|.||+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 4678899999998 99999999999999999999985 5899999999999999999999999999999999986
No 207
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.1e-18 Score=118.19 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=75.3
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
...+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..+++ .+.
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDAS----LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHH----HHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 445567789999999999999999 679999999999997765 477899999999999999999999998 899
Q ss_pred CceEEEEEcccc
Q 025973 85 DKPMRIQYAKTK 96 (245)
Q Consensus 85 g~~i~v~~~~~~ 96 (245)
|+.|+|.++...
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999999998654
No 208
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=118.92 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
...+++|||+|||.++++++ |+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAE----IQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44578999999999999999 779999999999998874 56899999999999999999999999999999999
Q ss_pred Ecccc
Q 025973 92 YAKTK 96 (245)
Q Consensus 92 ~~~~~ 96 (245)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98653
No 209
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.3e-18 Score=110.69 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=64.3
Q ss_pred CCccE-EEEcCCCCCCCHHH----HHHHhccCC-CeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 169 PPNNI-LFVQNVPHDTTPMA----LQMFFSQFP-GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~-l~v~nl~~~~t~~~----l~~~f~~~g-~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
+++.+ |||+|||..+++++ |+++|++|| +|.+|. .|+|||.|.+.++|.+|++.|||+.+.||+|+|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 34555 99999999999988 558999994 999882 29999999999999999999999999999999999
Q ss_pred ecC
Q 025973 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 973
No 210
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=120.28 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=69.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|.+|+..|||..|.|++|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 466789999999999999999999999999999998762 699999999999999999999999999999999987
No 211
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=117.73 Aligned_cols=75 Identities=24% Similarity=0.448 Sum_probs=68.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
...++|||+|||..+++++|+++|+.|| |.+|.++.++ +|||||+|.+.++|..|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4567899999999999999999999999 9999998764 689999999999999999 8999999999999999
Q ss_pred ecC
Q 025973 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 863
No 212
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=120.02 Aligned_cols=84 Identities=27% Similarity=0.513 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCe----EEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI----LEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v----~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.+..++++|||+|||.++++++ |+++|+.||.| ..+... ++.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERD----LVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHH----HHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3456789999999999999999 66999999998 455444 78899999999999999999999999999999
Q ss_pred ceEEEEEccccch
Q 025973 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.+...
T Consensus 95 ~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 95 KILVIEFGKNKKQ 107 (115)
T ss_dssp CBCEEEECCCCSC
T ss_pred cEEEEEEccCCCC
Confidence 9999999977644
No 213
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=2.6e-18 Score=116.07 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
++.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|.+|++.|||..|.|++|+|.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 355789999999999999999999999999777766532 689999999999999999999999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 214
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=112.45 Aligned_cols=80 Identities=18% Similarity=0.329 Sum_probs=72.9
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+.+ +||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQE----LRSLFERRGRVIECDVVK-----DYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHH----HHHHHHHHSCEEEEEECS-----SCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHcCCCEEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 44567889999999999999999 679999999999998873 599999999999999999999999999999
Q ss_pred EEEEccccc
Q 025973 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++.+..
T Consensus 74 ~v~~a~~~~ 82 (90)
T 2dnp_A 74 NVELSTKGQ 82 (90)
T ss_dssp EEEESCCCC
T ss_pred EEEECCCCC
Confidence 999987653
No 215
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=4.6e-18 Score=117.50 Aligned_cols=80 Identities=24% Similarity=0.515 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~----L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESE----LNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHH----HHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4466789999999999999999 77999999999999876 68999999999999999999999999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.....
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999876543
No 216
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.8e-18 Score=117.87 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=76.0
Q ss_pred cccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCe-EEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCc
Q 025973 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI-LEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v-~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~ 82 (245)
........+.++|||+|||.++++++ |+++|+.||.| ..|.+. +++.++|||||+|.+.++|.+|++. |+..
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~ 80 (114)
T 2cpy_A 6 SGEGDVNSAKVCAHITNIPFSITKMD----VLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKK 80 (114)
T ss_dssp CCCCSCCSCCCEEEEESCCTTSCHHH----HHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEE
T ss_pred CCCCCCCCCccEEEEeCcCCcCCHHH----HHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCc
Confidence 33445567789999999999999999 77999999999 555443 4788999999999999999999995 9999
Q ss_pred cCCceEEEEEccccchH
Q 025973 83 FYDKPMRIQYAKTKSDI 99 (245)
Q Consensus 83 ~~g~~i~v~~~~~~~~~ 99 (245)
|.|+.|.|.++..+...
T Consensus 81 ~~gr~i~v~~a~~~~~~ 97 (114)
T 2cpy_A 81 LNGREAFVHVVTLEDMR 97 (114)
T ss_dssp ETTEEEEEEEECHHHHH
T ss_pred cCCeEEEEEECCHHHHH
Confidence 99999999999776543
No 217
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=113.48 Aligned_cols=87 Identities=16% Similarity=0.332 Sum_probs=75.8
Q ss_pred ccccccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhccc--CCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC
Q 025973 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF--GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 3 p~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~--G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~ 80 (245)
|+.........+.++|||+|||..+++++ |+++|+.| |.|..|.+. +|||||+|.+.++|.+|+..||+
T Consensus 3 p~~~~~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g 73 (99)
T 2cpd_A 3 SGSSGDEDTMSSVKILYVRNLMLSTSEEM----IEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNG 73 (99)
T ss_dssp CCCCCCCSCSSCCCEEEEESCCTTCCHHH----HHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSS
T ss_pred CcccccccccCCcCEEEEeCCCCCCCHHH----HHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCC
Confidence 34444555677889999999999999999 67999999 999998765 57999999999999999999999
Q ss_pred CccCCceEEEEEccccch
Q 025973 81 FPFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 81 ~~~~g~~i~v~~~~~~~~ 98 (245)
..+.|+.|+|.++.++..
T Consensus 74 ~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 74 KVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp EEETTEEEEEECCCCCCC
T ss_pred CEeCCcEEEEEECCCCCC
Confidence 999999999999976543
No 218
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=121.72 Aligned_cols=81 Identities=31% Similarity=0.528 Sum_probs=73.1
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.....+.++|||+|||..+++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHH----HHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCCCCcEEEEEeCCCCCCHHH----HHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34566799999999999999999 779999999999997764 57889999999999999999999999999999
Q ss_pred ceEEEEEc
Q 025973 86 KPMRIQYA 93 (245)
Q Consensus 86 ~~i~v~~~ 93 (245)
+.|+|.+|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999875
No 219
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=115.41 Aligned_cols=83 Identities=14% Similarity=0.332 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCcc----
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPF---- 83 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~---- 83 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQE----LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHH----HHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 4456789999999999999999 779999999999986553 678899999999999999999999999999
Q ss_pred ----CCceEEEEEcccc
Q 025973 84 ----YDKPMRIQYAKTK 96 (245)
Q Consensus 84 ----~g~~i~v~~~~~~ 96 (245)
.++.|.|.|+.+.
T Consensus 96 ~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TSCCCSSCBEEEECCCS
T ss_pred cccCCCCceeEEccCCC
Confidence 5788999998754
No 220
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=5.8e-18 Score=112.88 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+ .||+..+.|+.|+|
T Consensus 5 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEE----LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHH----HHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEE
T ss_pred cCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEE
Confidence 358999999999999999 67999999999998654 36788999999999999999999 79999999999999
Q ss_pred EEcccc
Q 025973 91 QYAKTK 96 (245)
Q Consensus 91 ~~~~~~ 96 (245)
.++++.
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998754
No 221
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=1.6e-17 Score=110.23 Aligned_cols=74 Identities=15% Similarity=0.283 Sum_probs=68.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|.+|+. +++..+.|++|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 456789999999999999999999999999999998764 6899999999999999996 5888999999999987
No 222
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=115.40 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=73.7
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC---
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD--- 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g--- 85 (245)
.......++|||+|||.++++++ |+++|+.||.|..|.+..+ |||||+|.+.++|.+|++.||+..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQD----LKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHH----HHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 34456689999999999999999 6699999999999988766 899999999999999999999999999
Q ss_pred --ceEEEEEccccch
Q 025973 86 --KPMRIQYAKTKSD 98 (245)
Q Consensus 86 --~~i~v~~~~~~~~ 98 (245)
+.|+|.++.++..
T Consensus 81 ~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 81 ETAYIRVKVDGPRSP 95 (108)
T ss_dssp CEEEEEEEESSCCSC
T ss_pred cceEEEEEeCCCCCC
Confidence 9999999987543
No 223
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=124.40 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccC--CeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG--TILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..++|||+|||.++++++ |+++|+.|| .|.+|.+. .+|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~----L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQ----LIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHH----HHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 468999999999999999 679999999 89988654 478999999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
.|.++.++..
T Consensus 130 ~V~~a~~~~~ 139 (156)
T 3n9u_C 130 DVRPATRQNL 139 (156)
T ss_dssp EEEECCHHHH
T ss_pred EEEEcCCCcc
Confidence 9999976543
No 224
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=3e-18 Score=115.71 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE---EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
...++.++|||+|||.++++++ |+++|+.||.|..+ ....++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 85 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDE----ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (95)
T ss_dssp -----CEEEEEECCCTTCCHHH----HHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 3455679999999999999999 66999999998654 3445788999999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|+|.++.
T Consensus 86 ~l~v~~a~ 93 (95)
T 2ek1_A 86 KVKLSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEecc
Confidence 99999875
No 225
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.4e-18 Score=117.54 Aligned_cols=78 Identities=23% Similarity=0.460 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
....+++|||+|||.++++++ |+++|+.||.|.+|.+. +++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEAD----LIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHH----HHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred CCCCCCEEEEcCCCcccCHHH----HHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345679999999999999999 67999999999999876 35799999999999999999999999999999999
Q ss_pred EEccc
Q 025973 91 QYAKT 95 (245)
Q Consensus 91 ~~~~~ 95 (245)
.|+++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99865
No 226
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=116.05 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.+..++|||+|||.++++++ |+++|+.||.|. +.+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~----l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSD----LKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHH----HHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCcCcHHH----HHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 4456689999999999999999 669999999985 3333 346789999999999999999999999999999999
Q ss_pred EEEccccc
Q 025973 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|.++.++.
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99987653
No 227
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=112.00 Aligned_cols=82 Identities=18% Similarity=0.357 Sum_probs=73.8
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
+.....+.++|||+|||.++++++ |+++|+.||.|..|.+.+ +||||+|.+.++|.+|+..||+..+.|+.
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQE----LRAKFEEYGPVIECDIVK-----DYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHH----HHHHHHTTSCCCEEEECS-----SEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 345577889999999999999999 679999999999998873 59999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++.++..
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999976544
No 228
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=117.92 Aligned_cols=86 Identities=13% Similarity=0.300 Sum_probs=76.3
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
......+.++|||+|||..+++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. |+..+.
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQET----LRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHH----HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 344567889999999999999999 679999999999986654 678899999999999999999997 999999
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|.|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 84 GRNIDPKPCTPRGM 97 (105)
T ss_dssp TEEEBCCCSCCSSC
T ss_pred CEEEEEEEccCCCC
Confidence 99999999876654
No 229
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=116.12 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCe-eCCeEEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQ-FPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLK-IGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~-~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~-~~g~~i~v~~ 242 (245)
.++.+|||+|||..+++++|+++|+. ||.|..|.++.++ +|||||+|.+.++|..|+..|||.. |.|++|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 35678999999999999999999999 9999999999863 6899999999999999999999999 9999999999
Q ss_pred ec
Q 025973 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 87 a~ 88 (104)
T 2dhg_A 87 AI 88 (104)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 230
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=4.2e-18 Score=120.20 Aligned_cols=80 Identities=35% Similarity=0.539 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeE-EEEEecCHHHHHHHHHHHcCCccCC--ceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ-AWLVFKDVASATAAVEKMQGFPFYD--KPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~-afV~F~~~~~A~~a~~~l~~~~~~g--~~i~ 89 (245)
..-..|||+||++.+++++ |+++|++||.|.+|++... .+|+ |||+|.+.++|.+|++.|||..|.| ++|+
T Consensus 26 s~VL~I~V~NL~~~vte~~----L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDV----LHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CSEEEEEEESCCSCCCHHH----HHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CceEEEEECCCCCCCCHHH----HHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3445667999999999999 7799999999999977642 3577 9999999999999999999999998 8999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|+|+++...
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999987754
No 231
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=5.7e-17 Score=113.95 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=67.7
Q ss_pred CCccE--EEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEEe
Q 025973 169 PPNNI--LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI-AFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYA 243 (245)
Q Consensus 169 ~~~~~--l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~-afv~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a 243 (245)
+++++ |||+||+..+++++|+++|+.||.|.+|.++.. .|+ |||+|.+.++|..|++.|||..|.| ++|+|.||
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34555 579999999999999999999999999999764 586 9999999999999999999999987 69999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
|
T Consensus 100 k 100 (124)
T 2e5i_A 100 R 100 (124)
T ss_dssp S
T ss_pred c
Confidence 7
No 232
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=6.5e-18 Score=116.97 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=70.0
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.....+.++|||+|||.++++++ |+++|+.||.|.+|.+.. +|.++|||||+|.+.++|.+|+..+ +..+.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~----L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g 93 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEG----LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS 93 (109)
T ss_dssp -------CCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT
T ss_pred cccCCCCCEEEEeCCCCCCCHHH----HHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC
Confidence 34466789999999999999999 779999999999997765 4788999999999999999999965 589999
Q ss_pred ceEEEEEccccc
Q 025973 86 KPMRIQYAKTKS 97 (245)
Q Consensus 86 ~~i~v~~~~~~~ 97 (245)
+.|.|.++.++.
T Consensus 94 ~~l~V~~a~~~~ 105 (109)
T 2rs2_A 94 KTIDPKVAFPRR 105 (109)
T ss_dssp EEEEEEECCCCC
T ss_pred EEEEEEEccCCC
Confidence 999999987654
No 233
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=1.2e-17 Score=114.48 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+. ++||||+|.+.++|.+|++.||+..+.|+.|.
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEI----LEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHH----HHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 4456789999999999999999 77999999999999876 46999999999999999999999999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 77 v~~a~~~~~ 85 (103)
T 2dgu_A 77 IVFAKPPDQ 85 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCcc
Confidence 999976544
No 234
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=112.17 Aligned_cols=83 Identities=10% Similarity=0.095 Sum_probs=73.6
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.......++|||+|||.++++++ |+++|+.| .|..|.+. .+|.++|||||+|.+.++|.+|+. ||+..+.|+
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~----l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKN----VMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHH----HHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CCCCCCccEEEEECCCCCCCHHH----HHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 34566789999999999999999 66999999 88887655 468889999999999999999999 999999999
Q ss_pred eEEEEEccccc
Q 025973 87 PMRIQYAKTKS 97 (245)
Q Consensus 87 ~i~v~~~~~~~ 97 (245)
.|.|.++..+.
T Consensus 78 ~i~v~~a~~~~ 88 (91)
T 2dgw_A 78 YIEVFREKSGP 88 (91)
T ss_dssp EEEEEEESSCC
T ss_pred EEEEEECCcCC
Confidence 99999987653
No 235
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=122.67 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFP--GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
...+|||+|||..+++++|+++|+.|| .|..|+++.++ +|||||+|.+.++|.+|+..|||..|+|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 456899999999999999999999999 99999998764 68999999999999999999999999999999999
Q ss_pred ec
Q 025973 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 236
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=9.3e-17 Score=113.80 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|..|.+..++ +|||||+|.+.++|..|+..|||..|.|++|+|.||.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 466789999999999999999999999999999998863 6899999999999999999999999999999999986
No 237
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=116.11 Aligned_cols=75 Identities=28% Similarity=0.406 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45679999999999999999999999999999998764 6899999999999999999999999999999999986
No 238
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=113.93 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=73.3
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE-EEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE-ILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~-i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
..+....++|||+|||.++++++ |+++|+.||.|.. |.+. .+|+++|||||+|.+.++|.+|+.. |+..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEE----IVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHH----HHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 34566789999999999999999 6799999999987 6544 4788999999999999999999996 9999999
Q ss_pred ceEEEEEcccc
Q 025973 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
+.|.|.++..+
T Consensus 84 r~i~v~~~~~~ 94 (104)
T 1wg5_A 84 RYIEIFKSSRA 94 (104)
T ss_dssp SCCEEEEECTT
T ss_pred cEEEEEECCHH
Confidence 99999987654
No 239
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=1.5e-17 Score=121.93 Aligned_cols=82 Identities=18% Similarity=0.375 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.....+.++|||+|||.++++++ |+++|+.||.|.+|.+..+ ++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTE----LERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHH----HHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34466789999999999999999 7799999999999988865 58999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025973 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.++.++
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998765
No 240
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=115.36 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=70.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
....++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.++++|..|+.. |+..|.|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3466789999999999999999999999999999999874 58999999999999999998 99999999999999
Q ss_pred ec
Q 025973 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 92 a~ 93 (105)
T 2dh8_A 92 CT 93 (105)
T ss_dssp SC
T ss_pred cc
Confidence 86
No 241
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-17 Score=110.21 Aligned_cols=73 Identities=29% Similarity=0.372 Sum_probs=67.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|| .+++++|+++|+.||.|..|.+... +|||||+|.+.++|.+|+..|||..|.|++|.|.||+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35678999996 8999999999999999999999755 4999999999999999999999999999999999986
No 242
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=123.38 Aligned_cols=83 Identities=18% Similarity=0.378 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE--EEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCC----
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--ILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGF---- 81 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~---- 81 (245)
...++++|||+|||.++++++ |+++|+.||.|.. |++. .+|+++|||||+|.+. +|.+|+..||+.
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~----L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDS----ILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHH----HHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 356789999999999999999 6799999999965 6544 3788999999999999 999999999999
Q ss_pred ccCCceEEEEEccccch
Q 025973 82 PFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~ 98 (245)
.+.|+.|.|.++.+...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999976543
No 243
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-18 Score=114.05 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|..|+..|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356789999999999999999999999999999998863 689999999999999999999999999999999887
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 244
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=124.60 Aligned_cols=84 Identities=27% Similarity=0.504 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE--------EEecCCCCeeeEEEEEecCHHHHHHHHHHHcCC
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~ 81 (245)
.+..++++|||+|||.++++++ |+.+|+.||.|.. |.+..++.++|||||+|.+.++|.+|+..|||.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKD----LKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHH----HHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 4467889999999999999999 6699999998865 555678899999999999999999999999999
Q ss_pred ccCCceEEEEEccccc
Q 025973 82 PFYDKPMRIQYAKTKS 97 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~ 97 (245)
.+.|+.|.|.++....
T Consensus 116 ~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 116 VLFGKPMVVQFARSAR 131 (143)
T ss_dssp EETTEECEEEECCCSC
T ss_pred EeCCcEEEEEECCCCC
Confidence 9999999999997653
No 245
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=109.56 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
....+|||+|||..+++++|+++|+.| .|..|.++.+. +|+|||+|.+.++|..|+. |||..|+|+.|.|.+|+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356789999999999999999999999 99999998763 6899999999999999999 99999999999999986
Q ss_pred C
Q 025973 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 3
No 246
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=115.91 Aligned_cols=83 Identities=16% Similarity=0.391 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCC-eEEEEec-C---CCCeeeEEEEEecCHHHHHHHHHHHc--CCccC
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT-ILEILAF-K---TLKHKGQAWLVFKDVASATAAVEKMQ--GFPFY 84 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~-v~~i~~~-~---~~~~kg~afV~F~~~~~A~~a~~~l~--~~~~~ 84 (245)
..+.++|||+|||.++++++ |+++|+.||. |..|.+. . ++.++|||||+|.+.++|.+|+..|| +..+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREE----ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHH----HHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred ccCCCEEEEeCCCCcCCHHH----HHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 45689999999999999999 6699999998 9998776 2 46789999999999999999999996 58999
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 81 g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 81 GHQIAVDWAEPEID 94 (109)
T ss_dssp TBCCEEEESCSSCS
T ss_pred CCeEEEEEcCCCCC
Confidence 99999999977644
No 247
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=2.9e-17 Score=121.15 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.++++|..|+..||+..|.|++|.|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999998864 589999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 117 ~ 117 (156)
T 1h2v_Z 117 A 117 (156)
T ss_dssp S
T ss_pred C
Confidence 6
No 248
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.9e-17 Score=122.07 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
...+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..|.|+.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQ----IYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345789999999999999999 679999999999987653 5778999999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++.+...
T Consensus 111 l~V~~a~~~~~ 121 (156)
T 1h2v_Z 111 IRTDWDAGFKE 121 (156)
T ss_dssp CEEEEESCCCT
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 249
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=111.62 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEE-EecCC-CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVR-MVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~-l~~~~-~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+++++|+.+|+.||.|..++ ++.++ .+.|||+|.+.++|..|+..|||..|.|++|.|.||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999994 77764 5679999999999999999999999999999999986
No 250
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.4e-18 Score=109.75 Aligned_cols=72 Identities=18% Similarity=0.379 Sum_probs=66.1
Q ss_pred eEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
+|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++ +|+..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVED----VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHH----HHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999 669999999999987654 67889999999999999999998 9999999999999875
No 251
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=116.46 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=69.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+.. |+..|.|++|.|.+|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45789999999999999999999999999999999863 68999999999999999997 9999999999999986
No 252
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.8e-17 Score=122.57 Aligned_cols=83 Identities=23% Similarity=0.438 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
.....++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~----l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDT----LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHH----HHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345689999999999999999 679999999999997764 6789999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025973 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++.+..
T Consensus 142 l~v~~a~~~~ 151 (158)
T 2kn4_A 142 LRVQMARYGR 151 (158)
T ss_dssp EEEEEECCSS
T ss_pred EEEEECCCCC
Confidence 9999987653
No 253
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=114.99 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=68.9
Q ss_pred CccEEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEecC---CCeEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEE
Q 025973 170 PNNILFVQNVPHDT------TPMALQMFFSQFPGFKEVRMVEA---KPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLL 239 (245)
Q Consensus 170 ~~~~l~v~nl~~~~------t~~~l~~~f~~~g~v~~v~l~~~---~~g~afv~f~~~~~A~~A~~~l~g~~~~g~-~i~ 239 (245)
.+++|||+|||..+ |+++|+.+|+.||.|..|.+++. .+|||||+|.+.++|..|+..|||..|.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 45789999999999 78999999999999999998842 269999999999999999999999999998 999
Q ss_pred EEEec
Q 025973 240 ITYAK 244 (245)
Q Consensus 240 v~~ak 244 (245)
|.+|.
T Consensus 94 V~~a~ 98 (105)
T 2nlw_A 94 VNLFT 98 (105)
T ss_dssp EECSC
T ss_pred EEEcc
Confidence 99985
No 254
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=118.67 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE---EEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~---i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
......++|||+|||.++++++ |+++|+.||.|.. +....+|.++|||||+|.+.++|.+|+. ||+..|.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKH----VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHH----HHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 3455679999999999999999 6799999999854 4455689999999999999999999999 999999999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|.|.++..+..
T Consensus 95 ~i~V~~a~~~~~ 106 (124)
T 1wel_A 95 FIQVHPITKKGM 106 (124)
T ss_dssp CBEEEEECHHHH
T ss_pred EEEEEECCHHHH
Confidence 999999876543
No 255
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-17 Score=111.34 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=66.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC----CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~----~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.| .++.+ .+|||||+|.++++|..|+..|||..|.|++|+|.||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 467889999999999999999999999987 34443 26899999999999999999999999999999999986
No 256
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.9e-17 Score=114.66 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=67.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
...++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..+ +..|+|++|.|.+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 355779999999999999999999999999999998864 689999999999999999976 69999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 102 ~ 102 (109)
T 2rs2_A 102 F 102 (109)
T ss_dssp C
T ss_pred c
Confidence 5
No 257
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=112.27 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=73.6
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+. ++..+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g 82 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQD----LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 82 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHH----HHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT
T ss_pred CCccCCCCEEEEEcCCCcCCHHH----HHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC
Confidence 34566789999999999999999 779999999999986653 58899999999999999999999 4778999
Q ss_pred ceEEEEEccccch
Q 025973 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|.|.++.++..
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 9999999876544
No 258
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=116.94 Aligned_cols=80 Identities=18% Similarity=0.402 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRD----LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 357999999999999999 679999999999997764 4778999999999999999999 79999999999999
Q ss_pred EEccccch
Q 025973 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++..+..
T Consensus 99 ~~a~~~~~ 106 (114)
T 2cq4_A 99 QASQAEKN 106 (114)
T ss_dssp EEHHHHHH
T ss_pred EecCCCcc
Confidence 99876544
No 259
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=6.7e-18 Score=108.88 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|.+|++ +||..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 38999999999999999999999999999998764 6899999999999999998 9999999999999987
No 260
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=112.71 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=66.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC-CeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS-LKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~ak 244 (245)
+.++|||+|||..+++++|+++|+.||. |..+.+. . +|||||+|.+.++|..|+..||| ..+.|++|+|.||+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K-SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E-TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C-CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 4567999999999999999999999999 6555553 3 58999999999999999999999 99999999999986
No 261
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.8e-17 Score=110.30 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.+|||+|||..+++++|+++|+.| .|.++.+... +|||||+|.++++|..|+..|||..+.|++|+|.||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~-~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRN-KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGG-GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCC-CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45679999999999999999999999 9999988643 59999999999999999999999999999999999863
No 262
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=8.5e-18 Score=120.33 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=69.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCC----eeCCeE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--VRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSL----KIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~----~~~g~~ 237 (245)
.++++|||+|||..+|+++|+++|+.||.|.. |+++.++ +|||||+|.+. +|..|+..|||. .+.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999966 9998865 79999999999 999999999999 999999
Q ss_pred EEEEEec
Q 025973 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|.|.||+
T Consensus 100 l~V~~a~ 106 (131)
T 2m2b_A 100 INVEFAK 106 (131)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 9999986
No 263
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=1.4e-17 Score=121.91 Aligned_cols=82 Identities=35% Similarity=0.519 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC--ceEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD--KPMR 89 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g--~~i~ 89 (245)
+....+|||+||++.+++++ |+++|++||.|.+|++.. ..++|||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 43 ps~vl~l~VgNL~~~vted~----L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDV----LHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHH----HHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCceEEEEEeCcCCCCCHHH----HHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 33456689999999999999 779999999999998753 2357899999999999999999999999976 9999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.|++++..
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999987654
No 264
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=2.6e-17 Score=120.49 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-CeEEEEEeCCHHHHHHHHHHhCCCeeCC--eEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-~g~afv~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~ak 244 (245)
..|||+||+..+|+++|+++|++||.|.+|.+...+ +|||||+|.+.++|..|++.|||..|.| ++|+|+|||
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 458899999999999999999999999999997654 6899999999999999999999999965 999999997
No 265
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=2.9e-17 Score=122.22 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
...++++|||+|||..+++++ |+.+|+.||.|..|.+. .+|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~----L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDE----IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345678999999999999999 77999999999998665 47889999999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|.|.|+..+..
T Consensus 144 l~V~~a~~~~~ 154 (165)
T 1rk8_A 144 IQVDWCFVKGP 154 (165)
T ss_dssp CEEEESEECC-
T ss_pred EEEEEecCCCC
Confidence 99999876544
No 266
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=5.9e-18 Score=121.65 Aligned_cols=86 Identities=22% Similarity=0.410 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
..+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDT----LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHH----HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34455688999999999999999 679999999999987764 67889999999999999999999999999999
Q ss_pred ceEEEEEccccch
Q 025973 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++++...
T Consensus 117 ~~l~V~~a~~~~~ 129 (135)
T 2lea_A 117 RELRVQMARYGRP 129 (135)
T ss_dssp SCCEEEECCCCCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999876543
No 267
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-16 Score=111.33 Aligned_cols=76 Identities=14% Similarity=0.300 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCee--------CCe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKI--------GQQ 236 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~--------~g~ 236 (245)
...++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 356789999999999999999999999999999999863 58999999999999999999999999 688
Q ss_pred EEEEEEec
Q 025973 237 QLLITYAK 244 (245)
Q Consensus 237 ~i~v~~ak 244 (245)
+|.|.||+
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 89999986
No 268
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=1.4e-17 Score=141.82 Aligned_cols=75 Identities=31% Similarity=0.425 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+.++|||+|||..+|+++|..+|+.||.|..|.|+.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 55789999999999999999999999999999998763 7999999999999999999999999999999999986
No 269
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=115.33 Aligned_cols=76 Identities=25% Similarity=0.455 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEecCC-CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGF----KEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v----~~v~l~~~~-~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.| ..+.+..++ +|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 466889999999999999999999999998 566666443 699999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 103 ~ 103 (115)
T 2cpx_A 103 K 103 (115)
T ss_dssp C
T ss_pred c
Confidence 6
No 270
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=114.86 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v-~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+..+|||+|||..+++++|+++|+.||.| ..|.++.++ +|||||+|.+.++|..|+.. |+..|.|+.|.|.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356789999999999999999999999999 889988753 78999999999999999986 999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 6
No 271
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-18 Score=113.44 Aligned_cols=80 Identities=26% Similarity=0.364 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCC-eEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC-CccCCceE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT-ILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG-FPFYDKPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~-v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~-~~~~g~~i 88 (245)
...+.++|||+|||.++++++ |+++|+.||. |..+.+ .++|||||+|.+.++|.+|++.||+ ..+.|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~vv~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADD----LRQLFGDRKLPLAGQVL----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHH----HHHHHHHTTCCCSSCEE----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHH----HHHHHHHcCCceEEEEE----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 456789999999999999999 6799999999 555544 3578999999999999999999999 99999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.++..
T Consensus 76 ~v~~a~~~~~ 85 (93)
T 2cqh_A 76 EVDYSVSKKL 85 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCccc
Confidence 9999976543
No 272
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=2.4e-17 Score=115.74 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPG---FKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
....+|||+|||..+|+++|+++|+.||. |..|.++.++ +|||||+|.+.++|.+|+. +||..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 35678999999999999999999999999 8899988764 6899999999999999999 99999999999999
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
+|+
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 985
No 273
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=113.41 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=71.8
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.......++|||+|||+++++++ |+++|+.||.+ +|.+. ++++++|||||+|.+.++|.+|++ +|+..+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATEND----IYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHH----HHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 34567789999999999999999 66999999965 66443 478899999999999999999996 799999999
Q ss_pred eEEEEEccccc
Q 025973 87 PMRIQYAKTKS 97 (245)
Q Consensus 87 ~i~v~~~~~~~ 97 (245)
.|.|.++....
T Consensus 83 ~i~V~~~~~~~ 93 (102)
T 1wez_A 83 YVELFLNSTAG 93 (102)
T ss_dssp CCEEEEECCCC
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 274
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=1.9e-17 Score=114.90 Aligned_cols=77 Identities=27% Similarity=0.417 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCcc-cChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 11 EISPNNTIYINNLNEK-VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~-~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
+..++++|||+|||.+ +++++ |+++|+.||.|..|.+ ++|||||+|.+.++|.+|+..||+..+.|+.|+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~----l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSD----VETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHH----HHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCcEEEEeCCCcccCCHHH----HHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445699999999999 99999 7799999999999987 579999999999999999999999999999999
Q ss_pred EEEcccc
Q 025973 90 IQYAKTK 96 (245)
Q Consensus 90 v~~~~~~ 96 (245)
|.++...
T Consensus 94 V~~a~~~ 100 (110)
T 1wf1_A 94 INMAGEP 100 (110)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9998754
No 275
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.7e-18 Score=114.80 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=68.2
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.+ |.+|+..|||..+.|+.|+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQ----VKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHH----HTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHH----HHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 6899999999999999 669999999999987764 4788999999999999 9999999999999999999999
Q ss_pred ccccch
Q 025973 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 876544
No 276
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.1e-18 Score=109.61 Aligned_cols=73 Identities=22% Similarity=0.391 Sum_probs=66.7
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
++|||+|||.++++++ |+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|++.++ ..+.|+.|.|.+
T Consensus 1 ~~l~v~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEG----LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHH----HHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 5799999999999999 669999999998886654 57889999999999999999999888 999999999988
Q ss_pred c
Q 025973 93 A 93 (245)
Q Consensus 93 ~ 93 (245)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 277
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-17 Score=111.00 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE-VRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
....+|||+|||..+++++|+++|+.||.|.. |.++.+. +|||||+|.++++|.+|+.. |+..++|+.|.|.+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35678999999999999999999999999987 8887653 68999999999999999997 999999999999988
Q ss_pred cC
Q 025973 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
.+
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 63
No 278
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=5.2e-17 Score=114.14 Aligned_cols=79 Identities=27% Similarity=0.407 Sum_probs=68.9
Q ss_pred CCCCe--EEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeE-EEEEecCHHHHHHHHHHHcCCccCC--ce
Q 025973 13 SPNNT--IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ-AWLVFKDVASATAAVEKMQGFPFYD--KP 87 (245)
Q Consensus 13 ~~~~~--l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~-afV~F~~~~~A~~a~~~l~~~~~~g--~~ 87 (245)
+++++ |||+||+..+++++ |+++|++||.|.+|++... .|| |||+|.+.++|..|++.|||..|.| +.
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~----L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDV----LYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHH----HHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred CCCcEEEEEEcCcCCCCCHHH----HHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 44555 57999999999999 7799999999999977642 385 9999999999999999999999987 69
Q ss_pred EEEEEccccch
Q 025973 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++++...
T Consensus 94 l~V~~Ak~~~l 104 (124)
T 2e5i_A 94 LKIEYARPTRL 104 (124)
T ss_dssp EEEECCSCSCC
T ss_pred EEEEEecCCcc
Confidence 99999987764
No 279
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=109.92 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=72.1
Q ss_pred cCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEE-ecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL-AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~-~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
+.+.....++|||+|||.++++++ |+++|+.||.|..|+ +..+. ..+.|||+|.+.++|.+|+..|||..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 8 SVPKRQRIRKLQIRNIPPHLQWEV----LDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp CCCCCCSCCCEEEEEECSSSCHHH----HHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCCCCCCEEEEEcCCCCCCHHH----HHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 334455689999999999999999 679999999999994 55432 234499999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025973 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|+|.++.++
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 9999999775
No 280
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=113.76 Aligned_cols=80 Identities=13% Similarity=0.220 Sum_probs=70.5
Q ss_pred CCCCCCeEEE--cCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCcc-----
Q 025973 11 EISPNNTIYI--NNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF----- 83 (245)
Q Consensus 11 ~~~~~~~l~V--~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~----- 83 (245)
...++++||| +||+.++++++ |+++|++||.|..|.+.. .+|||||+|.+.++|.+|++.|||..+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~----L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQ----LLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHH----HHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHH----HHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 3567899999 77999999999 779999999999998764 379999999999999999999999987
Q ss_pred CCceEEEEEccccc
Q 025973 84 YDKPMRIQYAKTKS 97 (245)
Q Consensus 84 ~g~~i~v~~~~~~~ 97 (245)
.|+.|.|.|+....
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 58899999986543
No 281
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.5e-17 Score=116.81 Aligned_cols=83 Identities=7% Similarity=0.127 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCC---eEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT---ILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~---v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
......++|||+|||.++++++ |+++|+.||. |..|++. ++|+++|||||+|.+.++|.+|++ +|+..+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIED----VQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHH----HHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCCCCcEEEEeCCCCCCCHHH----HHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 3456689999999999999999 6799999998 6666443 468899999999999999999999 9999999
Q ss_pred CceEEEEEccccc
Q 025973 85 DKPMRIQYAKTKS 97 (245)
Q Consensus 85 g~~i~v~~~~~~~ 97 (245)
|+.|.|.++..+.
T Consensus 87 gr~i~V~~a~~~~ 99 (118)
T 2db1_A 87 HRYIEVFKSHRTE 99 (118)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999986554
No 282
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.1e-17 Score=119.82 Aligned_cols=85 Identities=7% Similarity=0.105 Sum_probs=73.4
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCC---eEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT---ILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~---v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
.++....++|||+|||+++|+++ |+++|+.||. |..|.+. +.|+++|||||+|.+.++|.+|++ +|+..+
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~d----L~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVED----VQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHH----HHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 34566789999999999999999 6799999998 6665443 458899999999999999999999 999999
Q ss_pred CCceEEEEEccccch
Q 025973 84 YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (245)
.|+.|.|.++..+..
T Consensus 113 ~gr~i~V~~a~~~e~ 127 (136)
T 2hgl_A 113 GHRYIEVFKSHRTEM 127 (136)
T ss_dssp SSSEEEEEECCHHHH
T ss_pred CCEEEEEEECChHHH
Confidence 999999999865443
No 283
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=109.32 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+. ++..|.|++|.|.||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 355679999999999999999999999999999998864 5899999999999999998 478999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 91 ~ 91 (103)
T 2cqg_A 91 N 91 (103)
T ss_dssp C
T ss_pred C
Confidence 6
No 284
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=7.2e-17 Score=107.46 Aligned_cols=72 Identities=25% Similarity=0.327 Sum_probs=63.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCee--CCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI--GQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~ak 244 (245)
++..+|||+|||..+|+++|+++|+.||.|.++.++.+.+|||||+|.++++|.. ++|..+ .|++|.|.+|+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 4567899999999999999999999999999999998878999999999999883 566554 59999999986
No 285
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=3.2e-17 Score=116.17 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+ .|||..|.|++|.|.||+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35689999999999999999999999999999998753 689999999999999999 799999999999999986
No 286
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.7e-17 Score=109.94 Aligned_cols=73 Identities=27% Similarity=0.489 Sum_probs=64.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.|+ .+.++.++ +|||||+|.++++|..|+..|||..|.|++|.|.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4567899999999999999999999885 44555442 689999999999999999999999999999999999
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 90 ~ 90 (102)
T 2fc8_A 90 K 90 (102)
T ss_dssp C
T ss_pred c
Confidence 7
No 287
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=109.50 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=63.6
Q ss_pred cEEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEecC---CCeEEEEEeCCHHHHHHHHHHhCCCeeCCe-EEEE
Q 025973 172 NILFVQNVPHDT------TPMALQMFFSQFPGFKEVRMVEA---KPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~------t~~~l~~~f~~~g~v~~v~l~~~---~~g~afv~f~~~~~A~~A~~~l~g~~~~g~-~i~v 240 (245)
++|||+|||..+ ++++|+++|+.||.|..+.+.+. .+|||||+|.++++|..|+..|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 579999999999 78999999999999999998852 269999999999999999999999999999 8876
No 288
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=113.21 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEe-cC-----CCeEEEEEeCCHHHHHHHHHHhC--CCeeCCeEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPG-FKEVRMV-EA-----KPGIAFVEYGDEMQATVAMQSLQ--SLKIGQQQLL 239 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~v~l~-~~-----~~g~afv~f~~~~~A~~A~~~l~--g~~~~g~~i~ 239 (245)
.++++|||+|||..+++++|+++|+.||. |.++.++ .+ .+|||||+|.++++|..|+..|| +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 32 26999999999999999999996 5999999999
Q ss_pred EEEec
Q 025973 240 ITYAK 244 (245)
Q Consensus 240 v~~ak 244 (245)
|.||+
T Consensus 86 V~~a~ 90 (109)
T 2dis_A 86 VDWAE 90 (109)
T ss_dssp EEESC
T ss_pred EEEcC
Confidence 99996
No 289
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-18 Score=116.69 Aligned_cols=82 Identities=15% Similarity=0.341 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEE--EecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i--~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
...+.++|||+|||.++++++ |+++|+.||.|..+ ....++.++|||||+|.+.++|.+|++ ||+..+.|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAE----LKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHH----HHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 345689999999999999999 66999999988762 223467889999999999999999999 99999999999
Q ss_pred EEEEccccc
Q 025973 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++.++.
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 999987654
No 290
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7e-17 Score=111.37 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=67.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+++++|+++|+.| .|..|.++.++ +|||||+|.++++|.+|+ .+|+..|+|+.|.|..|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45689999999999999999999999 89999998754 799999999999999999 599999999999998875
No 291
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=107.87 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=66.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+|||+|||..+++++|+++|+.||.|..+.++.++ +|+|||+|.++++|..|+..++ ..+.|++|.|.+|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 59999999999999999999999999999998864 6899999999999999999998 9999999999997
No 292
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=116.93 Aligned_cols=75 Identities=15% Similarity=0.296 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEec-C---C-CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE-A---K-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~-~---~-~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
....+|||+|||..+++++|+++|+.||.|..+.++. . + +|||||+|.+.++|..|+. +||..|+|+.|.|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3557899999999999999999999999997633333 2 1 6999999999999999999 9999999999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 6
No 293
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3.4e-17 Score=116.08 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||+|||.++++++ |+++|+.||.|.+|.+. .++.++|||||+|.+.++|.+|+ .||+..+.|+.|+|
T Consensus 35 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQD----LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHH----HHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 368999999999999999 67999999999998665 47889999999999999999999 69999999999999
Q ss_pred EEccccc
Q 025973 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
.+++...
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9987543
No 294
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=3e-17 Score=109.20 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
...++|||+|||.++++++ |+++|++| .|..|.+. +++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQE----VHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCEEEESCCSSCCHHH----HHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 4578999999999999999 67999999 89888774 6789999999999999999999999999999999999
Q ss_pred ccccch
Q 025973 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.....
T Consensus 75 a~~~~~ 80 (88)
T 1wg1_A 75 QPTDAL 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCce
Confidence 876543
No 295
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=7.3e-18 Score=112.67 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
++|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.+.+ |..|+..|||..++|++|+|.+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 469999999999999999999999999999998753 689999999999 999999999999999999999986
No 296
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.2e-17 Score=108.80 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=71.3
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
....++++|||+|| ++++++ |+++|+.||.|..|.+. .++|||||+|.+.++|.+|+..||+..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~----l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTL----LRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHH----HHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHH----HHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 44567899999996 899999 77999999999999874 5679999999999999999999999999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.++..
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999876543
No 297
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=109.54 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
....+|||+|||..+|+++|+++|+.||.+ .|.++.++ +|||||+|.++++|.+|+. +|+..|+|+.|.|.+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 355789999999999999999999999954 89988764 6899999999999999995 79999999999999875
No 298
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=4.9e-17 Score=116.54 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=69.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPG---FKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
....+|||+|||..+|+++|+++|+.||. |..|.++.++ +|||||+|.+.++|.+|+. +||..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 35678999999999999999999999999 8889998764 6899999999999999999 99999999999999
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
+|+
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 299
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=8.2e-17 Score=113.39 Aligned_cols=74 Identities=30% Similarity=0.382 Sum_probs=68.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
.++++|||+|+ .+++++|+.+|+.||.|.+|.+... +|||||+|.+.++|..|+..|||..|.|++|.|.||+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~-kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT-TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 45678999996 6999999999999999999999755 49999999999999999999999999999999999973
No 300
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=114.00 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=73.9
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCC---eEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT---ILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~---v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
..+....++|||+|||.++++++ |+++|+.||. |..|.+.. .|+++|||||+|.+.++|.+|+. +|+..+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMED----VLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHH----HHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred cCCCCCccEEEEeCCCCCCCHHH----HHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 34466789999999999999999 6699999988 77776553 57889999999999999999999 999999
Q ss_pred CCceEEEEEccccch
Q 025973 84 YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (245)
.|+.|.|.++.....
T Consensus 80 ~gr~i~V~~a~~~~~ 94 (107)
T 2lmi_A 80 GQRYVEVYEINNEDV 94 (107)
T ss_dssp SSSCCCCEECCHHHH
T ss_pred CCeEEEEEECCHHHH
Confidence 999999999876543
No 301
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=114.76 Aligned_cols=80 Identities=14% Similarity=0.343 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEES----LRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHH----HHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 368999999999999999 679999999999887664 578899999999999999999996 999999999999
Q ss_pred EEccccch
Q 025973 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99977654
No 302
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-17 Score=110.00 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=67.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC-CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~-~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..+ ...+ .+|||||+|.+.++|..|+..|||..+.|++|.|.||+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 456889999999999999999999999998777 2222 26999999999999999999999999999999999985
No 303
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=106.27 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=62.3
Q ss_pred CCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCcc--CCc
Q 025973 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF--YDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~--~g~ 86 (245)
.....+.++|||+|||.++++++ |+++|++||.|.+|.+..+ ++|||||+|.+.++|.+ +++..+ .|+
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~----L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~ 74 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEE----LQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGI 74 (89)
T ss_dssp ------CCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCE
Confidence 44567889999999999999999 7799999999999988864 78999999999999983 566554 489
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|.|.++.++..
T Consensus 75 ~v~v~~a~~k~~ 86 (89)
T 3d2w_A 75 SVHISNAEPKHN 86 (89)
T ss_dssp EEEEEECC----
T ss_pred EEEEEEcCCCCc
Confidence 999999876543
No 304
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.9e-17 Score=106.70 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=65.4
Q ss_pred eEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025973 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
+|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEK----IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHH----HHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 599999999999999 669999999999987654 57889999999999999999999 5999999999999875
No 305
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.6e-16 Score=123.16 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=70.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|..|+..+|+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 356789999999999999999999999999999999864 689999999999999999999999999999999987
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
.
T Consensus 93 ~ 93 (213)
T 4f02_A 93 Q 93 (213)
T ss_dssp C
T ss_pred c
Confidence 5
No 306
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=116.89 Aligned_cols=76 Identities=20% Similarity=0.451 Sum_probs=67.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEecC--CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--------VRMVEA--KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------v~l~~~--~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
.++++|||+|||..+|+++|+.+|+.||.|.. +.+... .+|||||+|.+.++|..|+..|||..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35678999999999999999999999998865 444432 27999999999999999999999999999999
Q ss_pred EEEEec
Q 025973 239 LITYAK 244 (245)
Q Consensus 239 ~v~~ak 244 (245)
.|.||+
T Consensus 123 ~V~~a~ 128 (143)
T 3egn_A 123 VVQFAR 128 (143)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999996
No 307
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=120.21 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
....++++|||+|||..+++++ |.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHH----HHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 3456789999999999999999 669999999999987664 5788999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025973 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++....
T Consensus 159 l~V~~a~~~~ 168 (177)
T 2f3j_A 159 MDIQLVASQI 168 (177)
T ss_dssp CEEEEESSGG
T ss_pred EEEEEecCCC
Confidence 9999987653
No 308
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-18 Score=120.65 Aligned_cols=84 Identities=37% Similarity=0.583 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEE--------EEecC---CCCeeeEEEEEecCHHHHHHHHHHHc
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------ILAFK---TLKHKGQAWLVFKDVASATAAVEKMQ 79 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~ 79 (245)
+..+.++|||+|||.++++++ |+++|+.||.|.. |.+.. ++.++|||||+|.+.++|.+|+..||
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIES----VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 456789999999999999999 6699999999987 65543 57889999999999999999999999
Q ss_pred CCccCCceEEEEEccccch
Q 025973 80 GFPFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 80 ~~~~~g~~i~v~~~~~~~~ 98 (245)
+..+.|+.|+|.++.++..
T Consensus 79 g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 79 GKEFSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999999877654
No 309
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=8.1e-17 Score=112.52 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=66.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeE-----EEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-----LLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~-----i~v~~ak 244 (245)
...+|||+|||..+++++|+++|+.||.|..|.++.+ |||||+|.+.++|..|+..|||..|.|++ |+|..++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 4567999999999999999999999999999999877 89999999999999999999999999998 6666553
No 310
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=8.8e-17 Score=125.67 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFP--GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
..++|||+||+..+|+++|+++|+.|| .|.+|.|+.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456799999999999999999999999 99999999874 68999999999999999999999999999999999
Q ss_pred ec
Q 025973 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 311
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=111.89 Aligned_cols=78 Identities=6% Similarity=0.145 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..++|||+|||.++++++ |+++|+.| .|..|.+. ++|+++|||||+|.+.++|.+|+. +|+..+.|+.|.|.
T Consensus 15 ~~~~v~V~nLp~~~te~d----l~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMEND----VRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHH----HHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 357999999999999999 66999999 78888665 367889999999999999999995 99999999999998
Q ss_pred Eccccc
Q 025973 92 YAKTKS 97 (245)
Q Consensus 92 ~~~~~~ 97 (245)
.+....
T Consensus 89 ~a~~~~ 94 (109)
T 2dnn_A 89 PATERQ 94 (109)
T ss_dssp ECCHHH
T ss_pred ECCccc
Confidence 886543
No 312
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=1.6e-16 Score=111.03 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce-----
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP----- 87 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~----- 87 (245)
...++|||+|||.++++++ |.++|+.||.|..|.+..+ |||||+|.+.++|.+|++.||+..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQD----LKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTH----HHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 4679999999999999999 6699999999999988765 89999999999999999999999999998
Q ss_pred EEEEEccc
Q 025973 88 MRIQYAKT 95 (245)
Q Consensus 88 i~v~~~~~ 95 (245)
|+|..+.+
T Consensus 86 i~v~~~~~ 93 (115)
T 3beg_B 86 IRVKVDGP 93 (115)
T ss_dssp CEEEECC-
T ss_pred EEeccCCC
Confidence 66666544
No 313
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=6.3e-17 Score=126.52 Aligned_cols=81 Identities=20% Similarity=0.176 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccC--CeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG--TILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..++|||+|||.++++++ |+++|+.|| .|.+|.+. .+++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~----L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDED----LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHH----HHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHH----HHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 567899999999999999 669999999 89988654 378899999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.....
T Consensus 143 ~V~~a~~~~~ 152 (229)
T 3q2s_C 143 VVTPVNKQFL 152 (229)
T ss_dssp EEEECCHHHH
T ss_pred EEEECCCCcc
Confidence 9999976543
No 314
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=2.3e-16 Score=104.62 Aligned_cols=71 Identities=27% Similarity=0.368 Sum_probs=66.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQF----P-------GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
+.++|||+|||..+++++|+++|+.| | .|.++.+..++ |||||+|.++++|..|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-SEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-cEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 56789999999999999999999999 8 89999998875 99999999999999999 999999999999
Q ss_pred EEEE
Q 025973 239 LITY 242 (245)
Q Consensus 239 ~v~~ 242 (245)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=106.77 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=68.5
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
.....++|||+|||.++++++ |+++|+.||.|.+|...+ ++. ||||+|.+.++|.+|+. ||+..+.|+.|.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQ----LSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHH----HHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred ccCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 355678999999999999999 679999999999984433 332 99999999999999999 999999999999
Q ss_pred EEEccccc
Q 025973 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|.++..+.
T Consensus 76 V~~a~~~~ 83 (94)
T 2e5g_A 76 VRPREQKE 83 (94)
T ss_dssp CBCSCCSC
T ss_pred EEECCcCC
Confidence 99876543
No 316
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=2.3e-16 Score=118.44 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 467899999999999999999999999999999998753 6899999999999999999999999999999999985
No 317
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=3.4e-17 Score=105.54 Aligned_cols=70 Identities=19% Similarity=0.359 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
+|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|..|+. +++..+.|++|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 48999999999999999999999999999998753 6899999999999999998 5899999999999987
No 318
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=112.80 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCe----EEEE--ecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI----LEIL--AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v----~~i~--~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
...++|||+|||+++++++ |+++|+.||.| ..|+ ...+|+++|||||+|.+.++|.+|++. |+..+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~d----l~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEE----VVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHH----HHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 5578999999999999999 66999999975 3443 336889999999999999999999995 99999999
Q ss_pred eEEEEEccccch
Q 025973 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|.|..+..+..
T Consensus 96 ~i~V~~a~~~e~ 107 (123)
T 2dha_A 96 YIELFRSTAAEV 107 (123)
T ss_dssp EECCEEECHHHH
T ss_pred EEEEEECCHHHH
Confidence 999988765443
No 319
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=5.8e-16 Score=106.04 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=67.8
Q ss_pred CCccEEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 025973 169 PPNNILFVQNVPH-----DTTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~-----~~t~~~l~~~f~~~g~v~~v~l~~~~------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~ 237 (245)
.++++|+|+||.. ..++++|++.|++||.|.+|.++.++ +|+|||+|.++++|.+|+..|||..|.|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 23789999999999999999998642 699999999999999999999999999999
Q ss_pred EEEEEec
Q 025973 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|.|.||.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999985
No 320
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=4.2e-17 Score=111.35 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=65.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecC-----CCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~-----~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+..+|||+|||..+++++|+++|+.||.|.. .++.+ .+|||||+|.+.++|..|++ |||..|.|++|.|.+|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4678999999999999999999999998866 33332 26899999999999999998 99999999999999986
No 321
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=1e-16 Score=113.12 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeE--EEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL--EILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~--~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.+....++|||+|||+++++++ |+++|+.| .|. .|.+. ++|+++|||||+|.+.++|.+|++ +++..+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~d----L~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g 110 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEE----IVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH 110 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHH----HHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC
Confidence 4456789999999999999999 67999999 566 77655 358899999999999999999999 58899999
Q ss_pred ceEEEEEcccc
Q 025973 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
+.|.|..+..+
T Consensus 111 R~I~V~~a~~~ 121 (126)
T 2hgm_A 111 RYIEVFKSSQE 121 (126)
T ss_dssp BCCCCEEECHH
T ss_pred EEEEEEECCHH
Confidence 99999887644
No 322
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=1.4e-16 Score=105.63 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=66.1
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhccc----C-------CeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF----G-------TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~----G-------~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~ 80 (245)
..+.++|||+|||.++++++ |+++|+.| | .|.++.+.++ +|||||+|.+.++|.+|+ .||+
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~----l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEA----MMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHH----HHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCC
Confidence 45679999999999999999 66999999 8 8999988754 799999999999999999 8999
Q ss_pred CccCCceEEEEE
Q 025973 81 FPFYDKPMRIQY 92 (245)
Q Consensus 81 ~~~~g~~i~v~~ 92 (245)
..+.|+.|+|..
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999874
No 323
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.1e-16 Score=115.14 Aligned_cols=81 Identities=25% Similarity=0.446 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
....+.++|||+|||..+++++ |+++|+.||.|..+.+. .+|.++|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDET----LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHH----HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCceEEECCCCCCCCHHH----HHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 3456789999999999999999 67999999999998665 4688999999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|+|.|++
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 99999985
No 324
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=111.44 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=68.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPG---FKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
...+|||+|||..+|+++|+++|+.||. |..|.++.++ +|||||+|.+.++|..|+. +|+..++|+.|.|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEE
Confidence 5678999999999999999999999888 8999998764 6899999999999999999 999999999999999
Q ss_pred ec
Q 025973 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 89 a~ 90 (107)
T 2lmi_A 89 IN 90 (107)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 325
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=105.15 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=64.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+++++|+.+|+.||.|.+|.+.+....||||+|.+.++|..|+. |||..|+|++|.|.+|+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 456899999999999999999999999999883322221199999999999999999 99999999999999875
No 326
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=2.2e-16 Score=123.73 Aligned_cols=77 Identities=29% Similarity=0.422 Sum_probs=73.4
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 168 APPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+++++|||+|||. .+++++|+++|+.||.|.+|.++.+++|||||+|.+.++|..|++.|||..|.|++|.|.||+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35678999999999 999999999999999999999999988999999999999999999999999999999999986
No 327
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=4.5e-17 Score=111.41 Aligned_cols=81 Identities=19% Similarity=0.357 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
..+.++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+. ++..+.|+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETE----IRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 34578999999999999999 779999999999986554 77899999999999999999999 99999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++..+..
T Consensus 80 v~~a~~~~~ 88 (102)
T 2xs2_A 80 LGPAIRKQN 88 (102)
T ss_dssp EEEEEECC-
T ss_pred EEECCcCcc
Confidence 999876543
No 328
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=7.4e-16 Score=114.39 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=70.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+++|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.++++|..|+..|||..+.|++|.|.+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 5689999999999999999999999999999999865 4899999999999999999999999999999999985
No 329
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=3e-16 Score=110.49 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
....++++|||+|| ++++++ |+++|+.||.|.+|.+. .++|||||+|.+.++|.+|+..||+..+.|+.|.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~----L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTL----LRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHH----HHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEcCC--CCCHHH----HHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44567899999996 699999 77999999999998875 5679999999999999999999999999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 105 V~~a~~~~~ 113 (121)
T 2bz2_A 105 VNIARKQPM 113 (121)
T ss_dssp EEECCSSCC
T ss_pred EEEeCCCCC
Confidence 999876543
No 330
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.1e-18 Score=117.90 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--------VRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g 235 (245)
.++++|||+|||..+++++|+++|+.||.|.. |.++.++ +|||||+|.+.++|..|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35678999999999999999999999999988 8888763 6899999999999999999999999999
Q ss_pred eEEEEEEec
Q 025973 236 QQLLITYAK 244 (245)
Q Consensus 236 ~~i~v~~ak 244 (245)
++|.|.||+
T Consensus 85 ~~l~V~~a~ 93 (116)
T 2lcw_A 85 NPIKVSFAT 93 (116)
Confidence 999999986
No 331
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=6.6e-16 Score=114.91 Aligned_cols=75 Identities=27% Similarity=0.491 Sum_probs=70.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
++++|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.++++|..|+..|||..+.|++|.|.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45789999999999999999999999999999998764 5899999999999999999999999999999999986
No 332
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=105.15 Aligned_cols=73 Identities=26% Similarity=0.317 Sum_probs=63.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
++++|||+|||..+++++|+++|+.||.|..+.++.+.+|||||+|.+.++|..|.. .+..+.|++|.|.+|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 457899999999999999999999999999999998878999999999999975422 1244589999999986
No 333
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3e-16 Score=122.30 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=71.1
Q ss_pred CCCccEEEEcCCCCCC---------CHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCee-----
Q 025973 168 APPNNILFVQNVPHDT---------TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI----- 233 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~---------t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~----- 233 (245)
...+++|||+||+..+ ++++|+.+|+.||.|.+|+++.++ |||||+|.+.++|..|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-NCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-TEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-CEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 3467889999999888 799999999999999999999875 9999999999999999999999999
Q ss_pred -------CCeEEEEEEec
Q 025973 234 -------GQQQLLITYAK 244 (245)
Q Consensus 234 -------~g~~i~v~~ak 244 (245)
.|+.|.|.||+
T Consensus 210 ~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp TTGGGGGGSCCCEEEECC
T ss_pred ccccccCCCCEEEEEEcc
Confidence 89999999997
No 334
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=9e-16 Score=105.10 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCc-----ccChHHHHHHHHHhhcccCCeEEEEecCC----CCeeeEEEEEecCHHHHHHHHHHHcCCc
Q 025973 12 ISPNNTIYINNLNE-----KVKIDQLKQSLHAVFKQFGTILEILAFKT----LKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~-----~~~~~~l~~~l~~~F~~~G~v~~i~~~~~----~~~kg~afV~F~~~~~A~~a~~~l~~~~ 82 (245)
..++++|+|+||.. +.++++ |++.|++||.|.+|.+.++ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~d----l~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVE----TKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHH----HHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHH----HHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 45789999999973 224556 7799999999999977642 5789999999999999999999999999
Q ss_pred cCCceEEEEEcccc
Q 025973 83 FYDKPMRIQYAKTK 96 (245)
Q Consensus 83 ~~g~~i~v~~~~~~ 96 (245)
|.|+.|.|.++...
T Consensus 81 ~~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 81 FGGRVVKACFYNLD 94 (105)
T ss_dssp ETTEECEEEECCHH
T ss_pred ECCcEEEEEEcCHH
Confidence 99999999998653
No 335
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=4.3e-16 Score=116.85 Aligned_cols=80 Identities=26% Similarity=0.362 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
...+.++|||+|||.++++++ |+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~----l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDE----LKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHH----HHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHH----HHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345679999999999999999 67999999999887 678889999999999999999999999999999999999
Q ss_pred EEcccc
Q 025973 91 QYAKTK 96 (245)
Q Consensus 91 ~~~~~~ 96 (245)
.|+.++
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 999765
No 336
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=2.6e-16 Score=107.57 Aligned_cols=73 Identities=18% Similarity=0.396 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|+. ++..++|++|.|.+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45789999999999999999999999999999999864 6899999999999999998 9999999999999874
No 337
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=8.7e-17 Score=115.58 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
.....++|||+|||+++++++ |+++|+.|| |.+|.+. ++++++|||||+|.+.++|.+|+ .+|+..+.|+.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~d----L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATEND----IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHH----HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 345678999999999999999 669999999 5577655 35788999999999999999999 589999999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
.|..+.....
T Consensus 116 ~V~~a~~~~~ 125 (139)
T 2hgn_A 116 ELFLNSTTGA 125 (139)
T ss_dssp CCEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9998876543
No 338
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.6e-15 Score=103.63 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=66.2
Q ss_pred CCccEEEEcCCCCCCC-----------HHHHHHHhccCCCeeEEEEec-CCCeEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 025973 169 PPNNILFVQNVPHDTT-----------PMALQMFFSQFPGFKEVRMVE-AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t-----------~~~l~~~f~~~g~v~~v~l~~-~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~ 236 (245)
.++++|+|+||..... +++|+++|++||.|..|.+.. ..+|||||+|.+.++|..|+..|||..|.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4678999999954432 689999999999999996642 2379999999999999999999999999999
Q ss_pred EEEEEEec
Q 025973 237 QLLITYAK 244 (245)
Q Consensus 237 ~i~v~~ak 244 (245)
+|.|.||+
T Consensus 93 ~l~v~~a~ 100 (112)
T 2dit_A 93 QITAQAWD 100 (112)
T ss_dssp ECEEEECC
T ss_pred EEEEEEeC
Confidence 99999985
No 339
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=1.1e-15 Score=114.13 Aligned_cols=80 Identities=21% Similarity=0.357 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~ 87 (245)
.....++|||+|||.++++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQ----VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHH----HHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEEcCCCcCCHHH----HHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 345579999999999999999 77999999999988654 36788999999999999999999999999999999
Q ss_pred EEEEEcc
Q 025973 88 MRIQYAK 94 (245)
Q Consensus 88 i~v~~~~ 94 (245)
|.|.+|.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999873
No 340
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=5.1e-16 Score=118.81 Aligned_cols=74 Identities=30% Similarity=0.443 Sum_probs=71.4
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 171 NNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
+++|||+|||. .+++++|+++|+.||.|.+|.++.+++|||||+|.++++|..|+..|||..+.|++|.|.||+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 56899999999 999999999999999999999999988999999999999999999999999999999999986
No 341
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=5.3e-16 Score=109.44 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=66.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCee--EEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFK--EVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
...+|||+|||..+|+++|+++|+.| .|. .|.++.++ +|||||+|.++++|.+|+. +++..|+|+.|.|.+|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 45789999999999999999999999 666 89998764 7999999999999999998 5789999999999987
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
.
T Consensus 119 ~ 119 (126)
T 2hgm_A 119 S 119 (126)
T ss_dssp C
T ss_pred C
Confidence 5
No 342
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.5e-16 Score=107.16 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=62.9
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---C---CCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---T---LKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~---~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
.....++|||+|||.++++++ |+++|++||.|. +.+.. + |+++|||||+|.+.++|.+|++.|++ +.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~----L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~ 76 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDE----ITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED 76 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHH----HHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET
T ss_pred CCCCCCEEEEcCCCCCCCHHH----HHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC
Confidence 345689999999999999999 679999999998 55443 2 67899999999999999999998843 56
Q ss_pred CceEEEEEc
Q 025973 85 DKPMRIQYA 93 (245)
Q Consensus 85 g~~i~v~~~ 93 (245)
|+.+.+..+
T Consensus 77 G~~~~~~~~ 85 (114)
T 2dnl_A 77 GKLYLCVSS 85 (114)
T ss_dssp TEEEEEECC
T ss_pred CcEEEeccC
Confidence 666666544
No 343
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.6e-16 Score=114.25 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=67.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+|+++|+++|+.|| |..|.|+.++ +|||||+|.++++|.+|+ .+|+..|+|+.|.|.+|.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 456799999999999999999999999 6799998764 789999999999999999 789999999999999875
No 344
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=1.8e-15 Score=117.22 Aligned_cols=82 Identities=27% Similarity=0.411 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
...++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|++.||+..+.|+.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDD----IKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHH----HHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHH----HHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 4568999999999999999 679999999999986653 678899999999999999999999999999999999
Q ss_pred EEEccccch
Q 025973 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 199 V~~a~~~~~ 207 (216)
T 2qfj_A 199 VGKAVTPPM 207 (216)
T ss_dssp EEECSSCSS
T ss_pred EEEecCCCC
Confidence 999876543
No 345
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=109.54 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=66.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGF----KEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v----~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
...+|||+|||..+|+++|+++|+.||.| ..|.|+.++ +|||||+|.+.++|.+|+.. |+..++|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45789999999999999999999999975 688888653 69999999999999999985 9999999999998
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
.|.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 346
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.8e-16 Score=104.43 Aligned_cols=78 Identities=18% Similarity=0.361 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.++++|||+|||.++++++ |+++|+.||.|.+|.+..+ ++|||||+|.+.++|.+|... ...+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDE----LREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHH----HHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEe
Confidence 4679999999999999999 6799999999999988754 689999999999999764331 3445799999999
Q ss_pred ccccch
Q 025973 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.++..
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876544
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.2e-15 Score=118.98 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCccc---------ChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCC
Q 025973 11 EISPNNTIYINNLNEKV---------KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~---------~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~ 81 (245)
....+++|||+|||..+ ++++ |+.+|++||.|.+|.+.. ++|||||.|.+.++|..|++.|+|.
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~----L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESR----IRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHH----HHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHH----HHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 35678999999999998 6888 779999999999998874 5799999999999999999999999
Q ss_pred cc------------CCceEEEEEccccch
Q 025973 82 PF------------YDKPMRIQYAKTKSD 98 (245)
Q Consensus 82 ~~------------~g~~i~v~~~~~~~~ 98 (245)
.+ .|+.|.|.|+.....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 99 899999999987654
No 348
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.3e-15 Score=129.71 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..+.++|||+|||..+++++ |..+|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESK----LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 44578999999999999999 67999999999998765 367889999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025973 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
.|.++....
T Consensus 175 ~V~~a~~~~ 183 (437)
T 3pgw_S 175 LVDVERGRT 183 (437)
T ss_pred EEEEeCCCC
Confidence 999997643
No 349
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=2.5e-15 Score=112.46 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHHHHHcCCccC---Cc
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY---DK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~---g~ 86 (245)
..+.++|||+|||.++++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+. |+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~----l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 167 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTEND----IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS 167 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSS
T ss_pred cCCCCeEEEcCCCCcCCHHH----HHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCC
Confidence 44678999999999999999 67999999999998655 36788999999999999999999999998776 48
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|.|.|+.
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 99999973
No 350
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=3.4e-15 Score=120.47 Aligned_cols=77 Identities=27% Similarity=0.447 Sum_probs=71.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEecCC--CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 168 APPNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~v~l~~~~--~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
..++++|||+|||..+++++|+ ++|+.||.|..|++..+. +|||||+|.+.++|..|+..|||..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3567899999999999999976 899999999999988743 6999999999999999999999999999999999
Q ss_pred Eec
Q 025973 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
||+
T Consensus 86 ~a~ 88 (282)
T 3pgw_A 86 YAK 88 (282)
T ss_pred Eec
Confidence 986
No 351
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=2e-15 Score=115.35 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEec---CCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..+.++|||+|||..+++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~----l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 186 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQ----VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 186 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHH----HHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 36789999999999999999 77999999999998655 377889999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025973 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
.|.++.+..
T Consensus 187 ~v~~a~~~~ 195 (198)
T 2yh0_A 187 LVQRASVGA 195 (198)
T ss_dssp EEEESCCCC
T ss_pred EEEECCCCC
Confidence 999987653
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=3.7e-15 Score=102.08 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=66.7
Q ss_pred CCccEEEEcCC--CCCC--------CHHHHHHHhccCCCeeEEEEecCC-------CeEEEEEeCCHHHHHHHHHHhCCC
Q 025973 169 PPNNILFVQNV--PHDT--------TPMALQMFFSQFPGFKEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSL 231 (245)
Q Consensus 169 ~~~~~l~v~nl--~~~~--------t~~~l~~~f~~~g~v~~v~l~~~~-------~g~afv~f~~~~~A~~A~~~l~g~ 231 (245)
.|+++|.+.|+ |..+ .+++|++.|++||.|.+|.++.++ +|+|||+|.++++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999999 3333 347999999999999999998752 699999999999999999999999
Q ss_pred eeCCeEEEEEEec
Q 025973 232 KIGQQQLLITYAK 244 (245)
Q Consensus 232 ~~~g~~i~v~~ak 244 (245)
.|+||+|.|.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999973
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=104.03 Aligned_cols=88 Identities=18% Similarity=0.318 Sum_probs=71.9
Q ss_pred CCCCCCCCeEEEcCCCcccC--h-----HHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCC
Q 025973 9 GNEISPNNTIYINNLNEKVK--I-----DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~--~-----~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~ 81 (245)
...+.++++|+|.||..... + +++.+.|+++|++||.|..|.+. +..++|||||+|.+.++|.+|+..|||.
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRHPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTCTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCCCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34677899999999943322 1 22444488999999999998663 4457899999999999999999999999
Q ss_pred ccCCceEEEEEccccc
Q 025973 82 PFYDKPMRIQYAKTKS 97 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~ 97 (245)
.+.|+.|+|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999987654
No 354
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.1e-15 Score=113.57 Aligned_cols=78 Identities=17% Similarity=0.395 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v 90 (245)
+.++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V 160 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKE----FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEI 160 (167)
T ss_dssp HCEEEEEEEECTTCCHHH----HHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEE
T ss_pred CCCeEEECCCCCCCCHHH----HHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEE
Confidence 467999999999999999 679999999999987664 57889999999999999999999 8999999999999
Q ss_pred EEcccc
Q 025973 91 QYAKTK 96 (245)
Q Consensus 91 ~~~~~~ 96 (245)
.++.++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999765
No 355
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=6.1e-15 Score=100.97 Aligned_cols=84 Identities=14% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCCeEEEcCC--CcccCh----HHHHHHHHHhhcccCCeEEEEecCC-----CCeeeEEEEEecCHHHHHHHHHHHcCC
Q 025973 13 SPNNTIYINNL--NEKVKI----DQLKQSLHAVFKQFGTILEILAFKT-----LKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 13 ~~~~~l~V~nL--p~~~~~----~~l~~~l~~~F~~~G~v~~i~~~~~-----~~~kg~afV~F~~~~~A~~a~~~l~~~ 81 (245)
.|++.|.+.|+ |.+..+ ++|.+-|++.|++||.|.+|.+.++ +.++|+|||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999998 334432 3466668899999999999988764 256899999999999999999999999
Q ss_pred ccCCceEEEEEcccc
Q 025973 82 PFYDKPMRIQYAKTK 96 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~ 96 (245)
.|.||.|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997654
No 356
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=3.9e-15 Score=113.55 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC---CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i 88 (245)
..+.++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+.. ++..+.|+.|
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i 175 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHH----LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNC 175 (196)
T ss_dssp --CCSEEEEECCTTTCCHHH----HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEEC
T ss_pred CCCcceEEEeCCCCCCCHHH----HHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEE
Confidence 34568999999999999999 679999999999986653 678999999999999999999995 8999999999
Q ss_pred EEEEccccch
Q 025973 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
.|.++.++..
T Consensus 176 ~v~~a~~k~~ 185 (196)
T 1l3k_A 176 EVRKALSKQE 185 (196)
T ss_dssp EEEECC----
T ss_pred EEEecCChhH
Confidence 9999987765
No 357
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=7.9e-15 Score=117.07 Aligned_cols=75 Identities=24% Similarity=0.382 Sum_probs=70.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
..+++|||+|||..+|+++|+++|+.||.|..|.+.+++ |||||+|.+.++|..|+..+||..+.|++|.|.||.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 456789999999999999999999999999999998875 999999999999999999999999999999999985
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=5.1e-15 Score=112.71 Aligned_cols=77 Identities=22% Similarity=0.420 Sum_probs=68.2
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.++|||+|||.++++++ |+.+|+.||.|..|++.+ ++.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+
T Consensus 109 ~~~l~V~nLp~~~t~~~----L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDD----IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHH----HHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHH----HHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEE
Confidence 48999999999999999 679999999999987654 5788999999999999999999855 5589999999998
Q ss_pred cccc
Q 025973 93 AKTK 96 (245)
Q Consensus 93 ~~~~ 96 (245)
...-
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 7643
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=9.5e-15 Score=111.20 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
..++|||+|||..+++++|+.+|+.||.|..|.+..+. +|||||+|.+.++|..|+..+ +..+.|++|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 34789999999999999999999999999999998753 699999999999999999865 5699999999999863
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.1e-15 Score=104.70 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=64.9
Q ss_pred CeEEEcCC----CcccChHHHHHHHHHhhcccCCeEEEE---ecCCCCeeeEEEEEecC----HHH----HHHHHH--HH
Q 025973 16 NTIYINNL----NEKVKIDQLKQSLHAVFKQFGTILEIL---AFKTLKHKGQAWLVFKD----VAS----ATAAVE--KM 78 (245)
Q Consensus 16 ~~l~V~nL----p~~~~~~~l~~~l~~~F~~~G~v~~i~---~~~~~~~kg~afV~F~~----~~~----A~~a~~--~l 78 (245)
++|||+|| |+.+++++ |..+|+.||.|.++. +..||.++|||||+|.+ +++ |.+|+. .+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~----Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDIS----IKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHH----HHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 68999999 99999999 669999999998863 44589999999999996 333 888988 78
Q ss_pred cCCccCCceEEEEEccc
Q 025973 79 QGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 79 ~~~~~~g~~i~v~~~~~ 95 (245)
||..+.|+.|+|.+-..
T Consensus 79 ng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TCEEETTEEEEEEECCT
T ss_pred cCCeecCcEEEEEECcc
Confidence 99999999999998543
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.6e-15 Score=102.96 Aligned_cols=73 Identities=10% Similarity=0.154 Sum_probs=64.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 025973 172 NILFVQNV----PHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGD----EMQ----ATVAMQ--SLQSLK 232 (245)
Q Consensus 172 ~~l~v~nl----~~~~t~~~l~~~f~~~g~v~~v~l~~~~-----~g~afv~f~~----~~~----A~~A~~--~l~g~~ 232 (245)
..|||+|| |..+++++|+++|+.||.|.++.++.|+ +|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 45999999 9999999999999999999999999986 7999999996 433 788888 789999
Q ss_pred eCCeEEEEEEec
Q 025973 233 IGQQQLLITYAK 244 (245)
Q Consensus 233 ~~g~~i~v~~ak 244 (245)
|+|++|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998753
No 362
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.7e-15 Score=101.75 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=57.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~--------~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
.+++|||+|||..+++++|+++|+.||.|. +.++.++ +|||||+|.++++|..|++.|+ .+.|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 456799999999999999999999999999 7776532 6899999999999999999983 2455555444
No 363
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.56 E-value=2.1e-14 Score=99.48 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCcccC------hHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 11 EISPNNTIYINNLNEKVK------IDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~------~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
++.++++|.+.|+=.... .++|++-|++.|++||.|.+|.+.++. .+|+|||+|.+.++|.+|++.|||..|.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457899999999865443 578888899999999999999887653 5899999999999999999999999999
Q ss_pred CceEEEEEcccc
Q 025973 85 DKPMRIQYAKTK 96 (245)
Q Consensus 85 g~~i~v~~~~~~ 96 (245)
|+.|+|.|+...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998644
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=2.6e-14 Score=99.70 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=66.6
Q ss_pred CccEEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEecCC---------CeEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 025973 170 PNNILFVQNVPH-----DTTPMALQMFFSQFPGFKEVRMVEAK---------PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 170 ~~~~l~v~nl~~-----~~t~~~l~~~f~~~g~v~~v~l~~~~---------~g~afv~f~~~~~A~~A~~~l~g~~~~g 235 (245)
++++|+++|+-. .-.+++|++.|++||.|.+|.++.++ +|++||+|.++++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999942 23479999999999999999998753 3899999999999999999999999999
Q ss_pred eEEEEEEec
Q 025973 236 QQLLITYAK 244 (245)
Q Consensus 236 ~~i~v~~ak 244 (245)
|+|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999973
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=1.9e-14 Score=100.40 Aligned_cols=83 Identities=11% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCcccC-hHHHHHHHHHhhcccCCeEEEEecC-------CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 13 SPNNTIYINNLNEKVK-IDQLKQSLHAVFKQFGTILEILAFK-------TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~-~~~l~~~l~~~F~~~G~v~~i~~~~-------~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
+++++|+|+|+-.... .++|.+-|++.|++||.|.+|.+.+ +++++|++||+|.+.++|.+|+..|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4789999999943211 2346666889999999999987654 2457899999999999999999999999999
Q ss_pred CceEEEEEccc
Q 025973 85 DKPMRIQYAKT 95 (245)
Q Consensus 85 g~~i~v~~~~~ 95 (245)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.55 E-value=5.1e-14 Score=97.56 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=66.1
Q ss_pred CccEEEEcCCCCCC----------CHHHHHHHhccCCCeeEEEEecCC-CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 170 PNNILFVQNVPHDT----------TPMALQMFFSQFPGFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 170 ~~~~l~v~nl~~~~----------t~~~l~~~f~~~g~v~~v~l~~~~-~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
++++|.+.|+-..- .+++|++.|++||.|.+|.+.++. +|+|||+|.+.++|.+|+..|||..|+|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 67889999994221 246889999999999999998764 7999999999999999999999999999999
Q ss_pred EEEEec
Q 025973 239 LITYAK 244 (245)
Q Consensus 239 ~v~~ak 244 (245)
.|.|+.
T Consensus 86 ~v~~~~ 91 (114)
T 3s6e_A 86 TAAYVP 91 (114)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999974
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=1.1e-14 Score=99.53 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=63.0
Q ss_pred EcCCCcccChHHHH-------HHHHHhh-cccCCeEEEEecC--CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025973 20 INNLNEKVKIDQLK-------QSLHAVF-KQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 20 V~nLp~~~~~~~l~-------~~l~~~F-~~~G~v~~i~~~~--~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~ 89 (245)
+.|||..+++++|+ +.|+..| ++||.|.+|.+.+ +++++|||||.|.+.++|.+|+..|||..+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56778888888765 3345666 9999999998775 457899999999999999999999999999999999
Q ss_pred EEEc
Q 025973 90 IQYA 93 (245)
Q Consensus 90 v~~~ 93 (245)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=4.4e-14 Score=96.56 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHh------------ccCCCeeEEEEecCC----CeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 179 VPHDTTPMALQMFF------------SQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 179 l~~~~t~~~l~~~f------------~~~g~v~~v~l~~~~----~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
|+..+++++|+++| ++||.|.+|.++.++ +|+|||+|.++++|.+|+..|||..|.|++|+|.|
T Consensus 23 l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 23 LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred cccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
Confidence 33344566665555 999999999999864 79999999999999999999999999999999999
Q ss_pred e
Q 025973 243 A 243 (245)
Q Consensus 243 a 243 (245)
+
T Consensus 103 s 103 (104)
T 1jmt_A 103 S 103 (104)
T ss_dssp C
T ss_pred c
Confidence 7
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=3.9e-14 Score=116.11 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=67.1
Q ss_pred CCccEEEEcCC--CCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC---Ce--EEEEE
Q 025973 169 PPNNILFVQNV--PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG---QQ--QLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl--~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~---g~--~i~v~ 241 (245)
.++.+|||+|+ +..+|+++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.|||..+. |+ +|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 46788999995 689999999999999999999988776 499999999999999999999998872 44 68889
Q ss_pred EecC
Q 025973 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
|+++
T Consensus 95 ~~~~ 98 (345)
T 3tht_A 95 FVEK 98 (345)
T ss_dssp ECSS
T ss_pred Eeec
Confidence 8853
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=93.03 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=61.8
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEe
Q 025973 171 NNILFVQNVP-------HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~-------~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 243 (245)
.+.|.|.-.. ..+++++|+++|++||.|.+|.++...+|||||+|.+.++|..|+..++ .+.|++|+|.||
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEc
Confidence 4456666543 4589999999999999999999987668999999999999999999755 467999999998
Q ss_pred c
Q 025973 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 88 ~ 88 (100)
T 2d9o_A 88 E 88 (100)
T ss_dssp S
T ss_pred c
Confidence 6
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.4e-13 Score=112.76 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=67.3
Q ss_pred CCCCCCeEEEcC--CCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC---C
Q 025973 11 EISPNNTIYINN--LNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY---D 85 (245)
Q Consensus 11 ~~~~~~~l~V~n--Lp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~---g 85 (245)
...|+++|||+| |+..+++++ |+++|++||.|.+|++.. +||||||+|.+.++|.+|++.|||..+. |
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~----L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQ----LLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHH----HHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred cCCCCCEEEEEcCCCCCCCCHHH----HHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 367899999999 578999999 779999999999998764 4799999999999999999999998773 4
Q ss_pred c--eEEEEEcc
Q 025973 86 K--PMRIQYAK 94 (245)
Q Consensus 86 ~--~i~v~~~~ 94 (245)
+ .+.|.|+.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 67888874
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-12 Score=88.49 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCC-------cccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 12 ISPNNTIYINNLN-------EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 12 ~~~~~~l~V~nLp-------~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
....++|.|.-.. ..+++++ |+++|++||.|.+|.+. ++++|||||+|.+.++|..|++.++ .+.
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~----L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~ 78 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDV----LLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV--GLV 78 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHH----HHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC--BCS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHH----HHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC--CCC
Confidence 4456788887665 4589999 77999999999999887 4678999999999999999999744 467
Q ss_pred CceEEEEEccccc
Q 025973 85 DKPMRIQYAKTKS 97 (245)
Q Consensus 85 g~~i~v~~~~~~~ 97 (245)
|+.|+|.|+....
T Consensus 79 g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 79 DNPLKISWLEGQP 91 (100)
T ss_dssp SSBCEEECSSCCC
T ss_pred CCeEEEEEccCCC
Confidence 9999999987654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.2e-12 Score=82.57 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCCccEEEEcCCC----CCCCH----HHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEE
Q 025973 168 APPNNILFVQNVP----HDTTP----MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 168 ~~~~~~l~v~nl~----~~~t~----~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~ 239 (245)
.||..+|+|.-.+ ...-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+|+. |||..++||.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 3566778888765 23333 6789999999999999999875 8999999999999998 999999999999
Q ss_pred EEEec
Q 025973 240 ITYAK 244 (245)
Q Consensus 240 v~~ak 244 (245)
|++++
T Consensus 80 V~lkt 84 (91)
T 2dnr_A 80 IALKS 84 (91)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99986
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5.8e-12 Score=87.34 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=68.1
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCC-HHHHHHHHHHhC--CCeeCCeEEEEEE
Q 025973 167 PAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGD-EMQATVAMQSLQ--SLKIGQQQLLITY 242 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~-~~~A~~A~~~l~--g~~~~g~~i~v~~ 242 (245)
..+++.+|+|+||+.. +++++|+++|+.||.|.+|.+..+.. .|||+|.+ +++|..|+..+| +..|.|..+.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 3467899999999999 99999999999999999999999985 89999999 899999999995 6888898888765
Q ss_pred e
Q 025973 243 A 243 (245)
Q Consensus 243 a 243 (245)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.9e-12 Score=81.90 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCC----cccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 11 EISPNNTIYINNLN----EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 11 ~~~~~~~l~V~nLp----~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
-.+|..+|+|.-.| ....+++|...|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ |||..+.|+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 36788999999887 356788888889999999999999988864 39999999999999999 999999999
Q ss_pred eEEEEEccc
Q 025973 87 PMRIQYAKT 95 (245)
Q Consensus 87 ~i~v~~~~~ 95 (245)
.|+|.++.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999765
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.9e-10 Score=79.71 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCCCCCCCeEEEcCCCcc-cChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecC-HHHHHHHHHHHc--CCccC
Q 025973 9 GNEISPNNTIYINNLNEK-VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD-VASATAAVEKMQ--GFPFY 84 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~-~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~-~~~A~~a~~~l~--~~~~~ 84 (245)
+-..++++.|||+||+.+ +++++ |.++|+.||.|..|.+.+.. -.|||.|.+ .++|..|+..|| +..|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sred----Lke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCRED----LHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHH----HHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred cccccCCeEEEEecCCCCcCCHHH----HHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 345778999999999999 99999 66999999999999887654 369999999 899999999995 68899
Q ss_pred CceEEEEEccccch
Q 025973 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|..+++.......+
T Consensus 85 g~~~~~evL~GeeE 98 (121)
T 1owx_A 85 NKEVTWEVLEGEVE 98 (121)
T ss_dssp SSSEEEEECCHHHH
T ss_pred CcEEEEEECCCHHH
Confidence 99999988765544
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=4.1e-11 Score=78.27 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCCCCCCCeEEEcCCCc-----ccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCcc
Q 025973 9 GNEISPNNTIYINNLNE-----KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~-----~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~ 83 (245)
....+|..+|+|.-++. .+.+++|...|.+.|+.||.|..+++..+. +||+|.+.++|.+|++ |||..+
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHH-GGGSEE
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHh-cCCeee
Confidence 44578899999998874 467777887799999999999999887652 9999999999999999 999999
Q ss_pred CCceEEEEEc
Q 025973 84 YDKPMRIQYA 93 (245)
Q Consensus 84 ~g~~i~v~~~ 93 (245)
.||.|+|.+-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.1e-10 Score=76.24 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=61.4
Q ss_pred CCCccEEEEcCCCCC-----CCH----HHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 025973 168 APPNNILFVQNVPHD-----TTP----MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~-----~t~----~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i 238 (245)
.||..+|+|.-++.. ... .+|.+.|+.||.|..++++.++ +||+|.+.++|.+|+. |||..++||.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 467778999887633 222 5689999999999999999875 9999999999999998 99999999999
Q ss_pred EEEE
Q 025973 239 LITY 242 (245)
Q Consensus 239 ~v~~ 242 (245)
+|.+
T Consensus 88 ~V~~ 91 (95)
T 1ufw_A 88 KISG 91 (95)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9986
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.3e-09 Score=71.35 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=66.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEE
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQF-----PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~-----g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 241 (245)
.++|-+-|||+.++...|+.+..++ |.+..|.|.++- +-|+|+|.+...|.+|.-.|+|..|.|++|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 4679999999999999999999999 999999999997 689999999999999999999999999999986
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.98 E-value=3.9e-09 Score=81.88 Aligned_cols=84 Identities=12% Similarity=0.215 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCC-cccChHHHHHHHHHhhcccCCeEEEEecC-------CCCeeeEEEEEecCHHHHHHHHHHHcCCccC
Q 025973 13 SPNNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFK-------TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 13 ~~~~~l~V~nLp-~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-------~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~ 84 (245)
.+...+.+.|+- ..-.++++.+.|++.|++||.|.+|.+.+ +++++|++||+|.+.++|.+|+..|||..+.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 344555555554 23333445556889999999999986642 4478999999999999999999999999999
Q ss_pred CceEEEEEcccc
Q 025973 85 DKPMRIQYAKTK 96 (245)
Q Consensus 85 g~~i~v~~~~~~ 96 (245)
||.|.+.|+...
T Consensus 202 gr~i~~~~~~~~ 213 (222)
T 3dxb_A 202 GRKVVAEVYDQE 213 (222)
T ss_dssp SSBCEEEECCHH
T ss_pred CeEEEEEEcCHH
Confidence 999999998643
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=3.2e-09 Score=82.40 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=61.8
Q ss_pred ccEEEEcCCC-----CCCCHHHHHHHhccCCCeeEEEEecC---------CCeEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 025973 171 NNILFVQNVP-----HDTTPMALQMFFSQFPGFKEVRMVEA---------KPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 171 ~~~l~v~nl~-----~~~t~~~l~~~f~~~g~v~~v~l~~~---------~~g~afv~f~~~~~A~~A~~~l~g~~~~g~ 236 (245)
..++.+.|+- ..-.+++|...|+.||.|.++.++.+ .+|++||+|.+.++|.+|++.|||..|.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3456666662 34467899999999999999999742 158999999999999999999999999999
Q ss_pred EEEEEEe
Q 025973 237 QLLITYA 243 (245)
Q Consensus 237 ~i~v~~a 243 (245)
.|.+.|+
T Consensus 204 ~i~~~~~ 210 (222)
T 3dxb_A 204 KVVAEVY 210 (222)
T ss_dssp BCEEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.54 E-value=1.5e-07 Score=62.56 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=67.6
Q ss_pred CeEEEcCCCccc-ChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025973 16 NTIYINNLNEKV-KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 16 ~~l~V~nLp~~~-~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
++|+|.||+.++ ..+++++.++.+|..|+++......++- +-.-|.|.+.++|.+|-..||+..|.|+.|+|.|+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF---RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF---KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT---TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc---eEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 579999999988 7788888899999999988887666554 246899999999999999999999999999999987
Q ss_pred c
Q 025973 95 T 95 (245)
Q Consensus 95 ~ 95 (245)
+
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=7.5e-07 Score=59.38 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=64.8
Q ss_pred CCCCCCeEEEcCCCcccChHHHHHHHHHhhccc-----CCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025973 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-----GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-----G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g 85 (245)
.....++|-+-|||..+++..| +.+.+.+ |.+..|.+..+- +-|+|+|.+...|-+|.-.|+|..|.|
T Consensus 17 ~~~~~rtiaL~~ipDtvndarI----r~lve~~~~i~~g~i~KI~L~pDH---~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLI----CQFLQEEIHINEKDIRKILLVSDF---NGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHH----HHHHHHHTCCCTTTCSEEEEETTT---TEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred CccCCcEEEEecCCCCCCHHHH----HHHHhhhhccCccceeEEEEecCC---CceEEEEccchhhHHHHhhcCCeeecC
Confidence 3445789999999999999994 4777777 989888777653 679999999999999999999999999
Q ss_pred ceEEEEEc
Q 025973 86 KPMRIQYA 93 (245)
Q Consensus 86 ~~i~v~~~ 93 (245)
++|+|.-.
T Consensus 90 r~Lr~gTv 97 (117)
T 2l9w_A 90 KVIRSGTI 97 (117)
T ss_dssp EEEEEECH
T ss_pred eEEEecCH
Confidence 99999764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.32 E-value=1.7e-06 Score=57.50 Aligned_cols=72 Identities=10% Similarity=0.154 Sum_probs=61.7
Q ss_pred cEEEEcCCCCCC-C----HHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEec
Q 025973 172 NILFVQNVPHDT-T----PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~-t----~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak 244 (245)
++|+|.||+..+ . .+.++++|..|+.+......++-+ -..|.|.++++|.+|...||+..|.|++|+|-||+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 459999998544 1 367899999999988888777753 57899999999999999999999999999999874
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.14 E-value=1.1e-05 Score=52.72 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=51.9
Q ss_pred cccCCCCCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHc
Q 025973 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79 (245)
Q Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~ 79 (245)
.+.+..+...+.++| ++|..+.-.| |.++|+.||.|.--++..| .|||.|.+.+.|..|+..+.
T Consensus 7 ~g~d~~p~r~HVf~l-~FP~ewKt~D----I~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 7 GGPDLQPKRDHVLHV-TFPKEWKTSD----LYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSCCCCCCCSEEEE-ECCTTCCHHH----HHHHHTTTCSCCCEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCeEEEE-eCChhhhhHH----HHHHhhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 345556667788888 9999999999 7799999997754455443 79999999999999999764
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.4e-05 Score=50.99 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcc----c-CCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQ----F-GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~----~-G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
....++|.|.|||++++++. |.-+|+. - |.|..|.... +.|+|.|.+.+.|+..++ -....++|.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~----L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~ 74 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDEL----LTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGA 74 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHH----HHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSS
T ss_pred ccCccEEEEECCCCCCChhH----heEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCe
Confidence 34678999999999999887 5567765 2 5888886654 579999999999999988 347888999
Q ss_pred eEEEEEcc
Q 025973 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|.|....
T Consensus 75 ~LsV~P~~ 82 (104)
T 2dhx_A 75 QLSLRPAP 82 (104)
T ss_dssp BCEEEECC
T ss_pred EEEEEcCC
Confidence 99997643
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.01 E-value=4.5e-05 Score=49.75 Aligned_cols=62 Identities=10% Similarity=0.192 Sum_probs=56.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-------CeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 173 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-------~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
.|.|++||+.+|++++.+.++.+..+.+..+++++ ..-|+|.|.+.+++..-.+.++|+.|.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999999999888888764 357999999999999999999998885
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.0003 Score=46.47 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=58.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEE
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQF-----PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~-----g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 242 (245)
...+|.|.|||..+.++.|.-+|++- |.|..+...+ +-|+|+|.++..|+++|.. ..+.|.+.+|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 46789999999999999999999862 5689888876 5799999999999999973 36788888888753
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.78 E-value=0.00012 Score=47.80 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=55.4
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-----CCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc----
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-----TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK---- 86 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-----~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~---- 86 (245)
++|-|++||+.+|+++ +.+..+.+..+....... .....+.|||.|.+.+++......++|..|.+.
T Consensus 2 ~KvVIRrLPP~Lteee----F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~ 77 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQ----LQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQE 77 (91)
T ss_dssp CEEEEEEECTTCCHHH----HHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCE
T ss_pred cEEEEeCCCCCCCHHH----HHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCE
Confidence 5799999999999999 557667777665544332 112336799999999999999999999888632
Q ss_pred -eEEEEEcc
Q 025973 87 -PMRIQYAK 94 (245)
Q Consensus 87 -~i~v~~~~ 94 (245)
.-.|++|.
T Consensus 78 ~~a~VE~AP 86 (91)
T 1uw4_A 78 YPAIVEFAP 86 (91)
T ss_dssp EECEEEECS
T ss_pred eeeEEEEcC
Confidence 33455553
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.72 E-value=2.9e-05 Score=50.82 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=46.6
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHc
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~ 79 (245)
..+.++| ++|..+.-.| |.++|+.||.|.--++..| .|||.|.+.+.|..|+..+.
T Consensus 5 R~HV~~l-~FP~ewKt~D----i~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSD----LYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHH----HHHHTTTSEEEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHH----HHHHHhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 4566777 9999999999 7799999997754455544 79999999999999999765
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=0.00031 Score=47.93 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCC-ceEEE
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD-KPMRI 90 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g-~~i~v 90 (245)
....+-|-|-+.|+..... +.+.|++||.|.+..... ..++-.|.|.+..+|.+|+. .||..+.| ..|-|
T Consensus 21 ~~~~~wVtVFGFp~~~~~~-----VL~~F~~~G~Iv~~~~~~---~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASASY-----ILLQFAQYGNILKHVMSN---TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp CGGGGEEEEECCCGGGHHH-----HHHHHHTTSCEEEEEECS---SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCEEEEECCCHHHHHH-----HHHHHHhhCcEEEeccCC---CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 4447889999999986554 448999999999987632 24799999999999999999 79999985 57778
Q ss_pred EEcccc
Q 025973 91 QYAKTK 96 (245)
Q Consensus 91 ~~~~~~ 96 (245)
.+...+
T Consensus 92 ~p~~d~ 97 (119)
T 1wwh_A 92 KPCIDK 97 (119)
T ss_dssp EECCCH
T ss_pred EECCCH
Confidence 776433
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.57 E-value=0.00075 Score=44.05 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=46.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhC
Q 025973 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~ 229 (245)
...+++++ ++|....-.||.++|++||.| .|+-+.+ .-|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--CeEEEEecCHHHHHHHHHhcc
Confidence 35567888 999999999999999999864 2232334 479999999999999999773
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.00098 Score=45.47 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=55.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeC-CeEEEEEE
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITY 242 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~ 242 (245)
..-|.|.+.|... -..+...|+.||.|.+...... .++-.|.|.++.+|.+||. .||..|+ +-.|-|..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 4568888888764 6677888999999988877333 4799999999999999998 6999998 46666654
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.38 E-value=0.00038 Score=45.66 Aligned_cols=64 Identities=9% Similarity=0.200 Sum_probs=53.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCC-------CeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~-------~g~afv~f~~~~~A~~A~~~l~g~~~~ 234 (245)
+-.|.|+.||+.+|++++.+.++..-.+.+..+++++ ..-|+|.|.+.++.....+.++|..|-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3469999999999999999999887777666666643 246899999999999999999998874
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.22 E-value=0.0004 Score=48.07 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=56.9
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEE-ecCC-----------C-----CeeeEEEEEecCHHHHHHHHHHH
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL-AFKT-----------L-----KHKGQAWLVFKDVASATAAVEKM 78 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~-~~~~-----------~-----~~kg~afV~F~~~~~A~~a~~~l 78 (245)
.-|.|=|.|.+.+..- -+.|++||.|.+-. ..++ . ...++-.|.|.+..+|.+|+. .
T Consensus 8 ~~VtVFGFp~~~~~~V-----I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 8 LAILVFGYPETMANQV-----IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp CEEEEECCCGGGHHHH-----HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred eEEEEEecCHHHHHHH-----HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 4577788888876654 48999999997721 1110 0 134678999999999999999 7
Q ss_pred cCCccCCceEEEEEcccc
Q 025973 79 QGFPFYDKPMRIQYAKTK 96 (245)
Q Consensus 79 ~~~~~~g~~i~v~~~~~~ 96 (245)
||..|.|..|-|.+..+.
T Consensus 82 NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TTCEETTEECEEEECCHH
T ss_pred CCeEeCcEEEEEEECCHH
Confidence 999999999999887543
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.19 E-value=0.001 Score=43.63 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=51.6
Q ss_pred CCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecC-----CCCeeeEEEEEecCHHHHHHHHHHHcCCccCC---c
Q 025973 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-----TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD---K 86 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-----~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g---~ 86 (245)
+-+|-|+.||+.+||++ +.+.++.+-.+....... ....-..|||.|.+.++.......++|..|.+ .
T Consensus 9 ~~KvVIRrLPP~Ltee~----F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQ----LEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCEEEECCCSCSCHHH----HTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred ceeEEEeCCCCCCCHHH----HHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 56899999999999998 444444443332222211 11122579999999999999999999987753 2
Q ss_pred --eEEEEEcc
Q 025973 87 --PMRIQYAK 94 (245)
Q Consensus 87 --~i~v~~~~ 94 (245)
.-.|++|.
T Consensus 85 ~~~a~VE~AP 94 (97)
T 2l08_A 85 EYPAVVEFAP 94 (97)
T ss_dssp EEEEEEEECC
T ss_pred EeeeEEEecC
Confidence 44566653
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.17 E-value=0.00094 Score=43.72 Aligned_cols=55 Identities=22% Similarity=0.419 Sum_probs=45.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhC
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~ 229 (245)
.++++| ++|....-.||.++|++||.| .|.-+.+ .-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--CeEEEEecCHHHHHHHHHhcc
Confidence 467777 999999999999999999953 3444444 379999999999999999875
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.55 E-value=0.0036 Score=43.28 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=51.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeE-EEE----------------ecC--CCeEEEEEeCCHHHHHHHHHHhCCCe
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKE-VRM----------------VEA--KPGIAFVEYGDEMQATVAMQSLQSLK 232 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-v~l----------------~~~--~~g~afv~f~~~~~A~~A~~~l~g~~ 232 (245)
.-|.|.+.|... ...+.+.|++||.|.. +.. ++. ..++.-|+|+++.+|.+||+ .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 347777776554 4556678899999854 211 111 13588999999999999998 79999
Q ss_pred eCCeEEEEEEe
Q 025973 233 IGQQQLLITYA 243 (245)
Q Consensus 233 ~~g~~i~v~~a 243 (245)
|.|..|-|.+-
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99998877653
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.33 E-value=0.0021 Score=54.52 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=42.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHH
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQ 226 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~ 226 (245)
+.|+|. .|..+++.+|.+.|++||.|.++.+..++.-||+|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 459997 799999999999999999999999998876699999999998887764
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.07 E-value=0.0031 Score=53.57 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=41.9
Q ss_pred CCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHH
Q 025973 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~ 76 (245)
+.+.|+|. .|...++++ |.++|++||+|..+...++. .-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~----l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENK----FLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CH----HHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHH----HHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 45789997 799999999 77999999999998777543 2699999999999987765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.00 E-value=0.099 Score=45.14 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=46.9
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~ 80 (245)
+.....++|+ +|..+...+ |.++|+.||.+.-.++.. ..|||.|.+.+.|..++..+..
T Consensus 437 ~~R~~vl~v~-f~~~~~~~~----i~~~fs~fg~v~V~widd-----t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 437 PKRDHVLHVT-FPKEWKTSD----LYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CCGGGEEEEE-CCTTCCHHH----HHHHGGGGCCCEEEECSS-----SEEEEECSCHHHHHHHHHHHTT
T ss_pred CCcCcEEEEe-CCCCCCHHH----HHHHHHhcCCEEEEEEcC-----CeEEEEECCHHHHHHHHHHHHh
Confidence 3446677776 999999888 679999999875445543 3699999999999999998854
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.59 E-value=0.78 Score=39.58 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=45.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC
Q 025973 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 171 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g 230 (245)
..+++|+ +|..+...+|.+.|+.||.+ +|+.+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--CeEEEEECCHHHHHHHHHHHHh
Confidence 4577887 88899999999999999964 4544433 4799999999999999998853
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=90.95 E-value=0.35 Score=29.84 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHhccCCC-----eeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Q 025973 181 HDTTPMALQMFFSQFPG-----FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 181 ~~~t~~~l~~~f~~~g~-----v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ak~ 245 (245)
..+...+|..++..-+. |-.|.+.. .+.||+-.. +.|..++..|++..+.|+++.|..+++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d---~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~~ 76 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD---NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKANK 76 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS---SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC-
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC---CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECCC
Confidence 55666777777765554 34555532 489999886 678889999999999999999999875
No 404
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=75.08 E-value=8.6 Score=25.13 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=33.8
Q ss_pred cccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHHH
Q 025973 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~a 74 (245)
...+..+|++.|..++..-..+.-|.-.+ .|.+.|||.| |.|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 55688999999999988766555553332 4567778855 6777766654
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=74.84 E-value=13 Score=23.47 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=46.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHh
Q 025973 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228 (245)
Q Consensus 170 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l 228 (245)
.++.+-|-|+|..+-..++.-.....|--.++..+. |.|.+.|.+.++-..|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid---gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID---GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS---SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec---CeeEEEecCChHHHHHHHHH
Confidence 457788999999998888776677778767777764 67999999999999999887
No 406
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=74.09 E-value=9.9 Score=24.89 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=33.2
Q ss_pred cccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHH
Q 025973 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~ 73 (245)
...+..+|++.|..++..-..+.-|.-.+ .|++.|||.| |.|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56688999999999988765554543222 4567788865 677777654
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=71.53 E-value=12 Score=24.69 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=33.2
Q ss_pred cccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHHH
Q 025973 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~a 74 (245)
...+..+|++.|..++..-..+.-|.-.+ .|.+.|||.| |.|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45678999999999988754444443222 4567788865 6777777653
No 408
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=66.50 E-value=10 Score=24.58 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=31.0
Q ss_pred cccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHH
Q 025973 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~ 73 (245)
...+..+|++.|..++..-..+.-|.-.+ .|.+.|||.| |.|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45688999999999988755554443333 3456777765 555555544
No 409
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=60.94 E-value=28 Score=24.39 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=32.8
Q ss_pred cccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHHH
Q 025973 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~a 74 (245)
...+..||++.|..++..-..+.-|.-.+ .|.+.|||.| |.|.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 45678899999999887654444443333 3557788866 6777776643
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=52.06 E-value=38 Score=24.42 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=32.4
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--ccCCCeeEEEEecC--CCeEEEEEeCCHH
Q 025973 173 ILFVQNVPH-D--------TTPMALQMFF--SQFPGFKEVRMVEA--KPGIAFVEYGDEM 219 (245)
Q Consensus 173 ~l~v~nl~~-~--------~t~~~l~~~f--~~~g~v~~v~l~~~--~~g~afv~f~~~~ 219 (245)
+.+|-|+|. . .+...|.+.| +.|..++-..+.-. ..|+++|.|..--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 477888886 2 3457899977 89988654444332 2689999997644
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=48.79 E-value=48 Score=20.91 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCCCCeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcC-------CccC
Q 025973 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG-------FPFY 84 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~-------~~~~ 84 (245)
...+|-|.|-|+|..+-..++--.+ .-.|---.|... -|.|.|.|.+.++-+.|+..|-+ ..+.
T Consensus 9 ikqnclikiinipqgtlkaevvlav----rhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnhnnnklqieir 79 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAV----RHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIR 79 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHH----HTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEET
T ss_pred hhhCcEEEEEecCCCceeeeeEEee----hhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEc
Confidence 4567899999999999888854222 333433344333 26899999999999999987732 2334
Q ss_pred CceEEEEEccc
Q 025973 85 DKPMRIQYAKT 95 (245)
Q Consensus 85 g~~i~v~~~~~ 95 (245)
|..+.|-...+
T Consensus 80 gqicdvistip 90 (129)
T 4eyt_A 80 GQICDVISTIP 90 (129)
T ss_dssp TEEEEEECCCC
T ss_pred ceeeeeeecCC
Confidence 55555544433
No 412
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=46.52 E-value=40 Score=23.21 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=30.2
Q ss_pred ccChHHHHHHHHHhhcccCCeEEEEecC----CCCeeeEEEEEecCHHHHHHH
Q 025973 26 KVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~~~A~~a 74 (245)
..+..||++.|..++..--.+.-|.-.+ .|.+.|||.| |.+.+.|.+.
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 4678899988887776543444443222 4556777766 6777766543
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.52 E-value=65 Score=23.20 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=33.5
Q ss_pred EEEcCCCcc---------cChHHHHHHHHHhh--cccCCeEEEEecCCCCeeeEEEEEecCHHH-HHHHHH
Q 025973 18 IYINNLNEK---------VKIDQLKQSLHAVF--KQFGTILEILAFKTLKHKGQAWLVFKDVAS-ATAAVE 76 (245)
Q Consensus 18 l~V~nLp~~---------~~~~~l~~~l~~~F--~~~G~v~~i~~~~~~~~kg~afV~F~~~~~-A~~a~~ 76 (245)
+.|-|+|.. .+..+ |.+.| +.|.++....+....-..|+|.|.|.+.-. =..|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~----l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSK----LRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHH----HHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHH----HHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 556677762 23456 44655 888887655444333467899999976543 344443
No 414
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.05 E-value=51 Score=20.72 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=36.2
Q ss_pred CCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHH
Q 025973 22 NLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 22 nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~ 75 (245)
-.+.+++..+|+++++.+|.- .|..|.........--|||......+|....
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~V--kV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNV--KVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTC--CEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCC--CceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 367899999999999999863 5767644332122235999998777766543
No 415
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=40.54 E-value=68 Score=20.26 Aligned_cols=57 Identities=7% Similarity=0.034 Sum_probs=41.9
Q ss_pred EEEcCCCcccChHHHHHHHHHhhccc-CCeEEE-EecCCCCeeeEEEEEecCHHHHHHHHHHHc
Q 025973 18 IYINNLNEKVKIDQLKQSLHAVFKQF-GTILEI-LAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i-~~~~~~~~kg~afV~F~~~~~A~~a~~~l~ 79 (245)
+.+-.+|.+++-++|.+.|++.|.-. +....+ +....| -+|.+.+.++-..|+..+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHHH
Confidence 55666789999999999999999853 333344 333343 5689999999999998543
No 416
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=39.47 E-value=41 Score=21.08 Aligned_cols=52 Identities=8% Similarity=0.180 Sum_probs=35.7
Q ss_pred cCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHH
Q 025973 21 NNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 21 ~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a 74 (245)
=..+.+++..+|+++++.+|.- .|..|.........--|||......+|...
T Consensus 27 F~V~~~AnK~qIK~ave~lf~V--kV~~VNT~~~~~~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 27 FAVDDRASKGEVADAVEEQYDV--TVEQVNTQNTMDGEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEECTTCCHHHHHHHHHHHHCC--CEEEEEEEECTTSSEEEEEEECTTSCHHHH
T ss_pred EEECCCCCHHHHHHHHHHHhCC--CceEEEeeecCCCceEEEEEECCCCcHHHH
Confidence 3468899999999999999863 677765443222223599999766655443
No 417
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=33.75 E-value=7 Score=27.51 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=17.8
Q ss_pred HHHHHHhccCCCeeEEEEecCCCeEEEEEeC
Q 025973 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216 (245)
Q Consensus 186 ~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~ 216 (245)
+|+.++|...|.|+++.. .+||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~---~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV---RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET---TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC---CCCeeEEeeC
Confidence 455667777788776543 3699999876
No 418
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=28.61 E-value=20 Score=20.22 Aligned_cols=26 Identities=15% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEcCCCcccChHHHHHHHHHhhcccC
Q 025973 19 YINNLNEKVKIDQLKQSLHAVFKQFG 44 (245)
Q Consensus 19 ~V~nLp~~~~~~~l~~~l~~~F~~~G 44 (245)
|+.|+|..+.-..|++.|+.+.+..|
T Consensus 42 flenvprgtktahirealrryieeig 67 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRYIEEIG 67 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCccchHHHHHHHHHHHHHhc
Confidence 45688888888888888887776665
No 419
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=26.30 E-value=98 Score=17.74 Aligned_cols=58 Identities=9% Similarity=0.046 Sum_probs=44.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCCCe
Q 025973 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232 (245)
Q Consensus 172 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g~~ 232 (245)
.++.|.++....-...+...+.. ..|..+.+-... +-+.|.|.+.++...+++.+ |+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~-~~~~v~~~~~~~i~~~i~~~-Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE-AVVAGNKEDVDKYIKAVEAA-GYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE-EEEEEEGGGHHHHHHHHHHT-TCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC-CEEEEEECCHHHHHHHHHHc-CCc
Confidence 46889999988888999999998 888877776554 57788888666667777754 443
No 420
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=25.63 E-value=1.4e+02 Score=19.29 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=43.8
Q ss_pred CCCeEEEcCCCcccChHH--HHHH----HHHhhcccC-----CeEEE-EecC----CCCeeeEEEEEecCHHH---HHHH
Q 025973 14 PNNTIYINNLNEKVKIDQ--LKQS----LHAVFKQFG-----TILEI-LAFK----TLKHKGQAWLVFKDVAS---ATAA 74 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~--l~~~----l~~~F~~~G-----~v~~i-~~~~----~~~~kg~afV~F~~~~~---A~~a 74 (245)
..+.|.|.|+|..-.+.. +.+. |.+.|-..+ .|.++ +... .......-.|.|....+ ..+|
T Consensus 2 Rr~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILka 81 (100)
T 2w7a_A 2 AMGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRA 81 (100)
T ss_dssp CTTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHH
T ss_pred CccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHH
Confidence 357899999998733222 3333 334443343 35554 2221 11233467778877665 4444
Q ss_pred HHHHcCCccCCceEEEE
Q 025973 75 VEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 75 ~~~l~~~~~~g~~i~v~ 91 (245)
........+.|..|++.
T Consensus 82 ar~k~~vtykg~pirls 98 (100)
T 2w7a_A 82 AREKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHHCCEEETTEEEEEE
T ss_pred HHHhCceeeCCcceeec
Confidence 44445678889988874
No 421
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=25.46 E-value=1.1e+02 Score=19.23 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=25.1
Q ss_pred eeEEEEecCCCeEEEEEeCCHHHHHHHHHHhCC
Q 025973 198 FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 198 v~~v~l~~~~~g~afv~f~~~~~A~~A~~~l~g 230 (245)
|..+.+...-+||.||++...++...++..+.|
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 555555444479999999999988888887765
No 422
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.36 E-value=49 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=14.4
Q ss_pred cCCeEEEEecCCCCeeeEEEEEecCH
Q 025973 43 FGTILEILAFKTLKHKGQAWLVFKDV 68 (245)
Q Consensus 43 ~G~v~~i~~~~~~~~kg~afV~F~~~ 68 (245)
.|.|..|... +..|||.|.+.
T Consensus 27 lGtV~kV~~~-----~~~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSA-----REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETT-----TTEEEEEETTT
T ss_pred EeEEEEEecC-----CcEEEEEEccC
Confidence 3677776533 46899999863
No 423
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.11 E-value=1.5e+02 Score=20.92 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=34.8
Q ss_pred CCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHH
Q 025973 23 LNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 23 Lp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~ 75 (245)
++.+++..+|+++++.+|.- .|..|.........--|||......+|....
T Consensus 100 Vd~~AnK~qIK~AVEklf~V--kV~kVNTl~~~~~~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 100 VDVKANKHQIKQAVKKLYDI--DVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp ECTTCCHHHHHHHHHHHHCC--CEEEEEEEECSSSCEEEEEEECTTSCHHHHH
T ss_pred EECCCCHHHHHHHHHHHhCC--cceEEEeeEcCCCceEEEEEECCCCcHHHHH
Confidence 67889999999999999864 6777744321112235999997766555443
No 424
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.79 E-value=1.9e+02 Score=19.99 Aligned_cols=48 Identities=13% Similarity=0.215 Sum_probs=34.3
Q ss_pred CCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHH
Q 025973 23 LNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 23 Lp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a 74 (245)
++.+++..+|++.++.+|.- .|..|... .+|. --|||.+....+|...
T Consensus 86 Vd~~AnK~qIK~AVEklf~V--kV~kVNTl~~~~g~--KKAyV~L~~~~daldv 135 (142)
T 3u5e_X 86 VSMKANKYQIKKAVKELYEV--DVLKVNTLVRPNGT--KKAYVRLTADYDALDI 135 (142)
T ss_dssp ECTTCCHHHHHHHHHHHHSC--CEEEEEEEECTTSC--EEEEEEECTTCCHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCC--ceeEEEeeEcCCCc--eEEEEEeCCCCcHHHH
Confidence 57889999999999999863 56666433 2332 3499999876666554
No 425
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=21.57 E-value=90 Score=25.95 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=41.8
Q ss_pred CeEEEcCCCcccChHHHHHHHHHhhcccCCeEEEEecCCCCeeeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025973 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~~~A~~a~~~l~~~~~~g~ 86 (245)
.--+|||+..-.....+-..+.++..+||+|..+++- +.-+|...+.+.+..++. -++..+.++
T Consensus 15 ~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~r 78 (494)
T 3swz_A 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGR 78 (494)
T ss_dssp CCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBC
T ss_pred CCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCC
Confidence 3457888874332222223367888899999888763 345677889999998886 344555444
No 426
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=21.07 E-value=67 Score=19.61 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=14.0
Q ss_pred CCeEEEEecCCCCeeeEEEEEecCH
Q 025973 44 GTILEILAFKTLKHKGQAWLVFKDV 68 (245)
Q Consensus 44 G~v~~i~~~~~~~~kg~afV~F~~~ 68 (245)
|.|.+|... +..|+|.|.+.
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEeccC-----CCEEEEEEcCC
Confidence 677776443 46899999863
No 427
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=20.66 E-value=1.9e+02 Score=20.16 Aligned_cols=49 Identities=8% Similarity=0.198 Sum_probs=34.7
Q ss_pred CCcccChHHHHHHHHHhhcccCCeEEEEec--CCCCeeeEEEEEecCHHHHHHHH
Q 025973 23 LNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 23 Lp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~~~A~~a~ 75 (245)
++.+++..+|++.++.+|.- .|..|... .+|. --|||......+|...-
T Consensus 94 Vd~kAnK~qIK~AVEklf~V--kV~kVNTl~~p~g~--KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 94 VHNRSTKPQIKSAFEKLYNV--KVRSVNTLNTITGN--KKAYIRLAADSDSLTLA 144 (150)
T ss_dssp ECTTCCHHHHHHHHHHHHCC--CEEEEEEEECTTSC--EEEEEEECSSSCHHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCC--ceeEEEeeEcCCCc--EEEEEEcCCCCcHHHHH
Confidence 57889999999999999863 56666433 3332 35999997766665543
No 428
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.07 E-value=73 Score=18.86 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=13.0
Q ss_pred CCeEEEEecCCCCeeeEEEEEecC
Q 025973 44 GTILEILAFKTLKHKGQAWLVFKD 67 (245)
Q Consensus 44 G~v~~i~~~~~~~~kg~afV~F~~ 67 (245)
|.|..|.. .++.|+|.|.+
T Consensus 32 gtI~~V~~-----~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKINI-----LKQSCFIIFED 50 (66)
T ss_dssp EEEEEEET-----TTTEEEEEETT
T ss_pred eEEEEEcc-----CCcEEEEEEcc
Confidence 56666643 24789999976
Done!