Query 025974
Match_columns 245
No_of_seqs 97 out of 99
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 21:50:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 1.2E-29 4E-34 208.6 15.9 132 102-245 24-165 (165)
2 2lnj_A SLL1418 protein, putati 99.9 3.5E-31 1.2E-35 220.4 0.0 135 102-245 30-170 (170)
3 1v2b_A 23-kDa polypeptide of p 99.9 1.5E-27 5.1E-32 202.1 12.1 136 102-245 23-177 (177)
4 1tu1_A Hypothetical protein PA 97.2 0.0037 1.3E-07 50.4 11.4 113 117-244 24-141 (148)
5 3lyd_A Uncharacterized protein 96.3 0.11 3.8E-06 43.7 13.6 139 90-245 8-158 (161)
6 1q90_R Cytochrome B6-F complex 17.7 61 0.0021 22.2 1.8 17 73-89 7-23 (49)
7 2pq4_B Periplasmic nitrate red 15.3 56 0.0019 20.8 1.1 14 75-88 3-16 (35)
8 1e0n_A Hypothetical protein; Y 12.1 47 0.0016 19.8 0.0 17 214-230 10-26 (27)
9 3q8j_A Asteropsin A, ABU8-1; c 12.1 40 0.0014 21.9 -0.3 13 39-51 8-20 (37)
10 3et6_A Soluble guanylyl cyclas 12.0 1.1E+02 0.0038 23.9 2.2 33 124-157 4-36 (190)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.97 E-value=1.2e-29 Score=208.57 Aligned_cols=132 Identities=25% Similarity=0.427 Sum_probs=114.9
Q ss_pred cCcccccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCC--CCceEEEece
Q 025974 102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDCK 179 (245)
Q Consensus 102 ~~W~~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~app--g~~AkLIdA~ 179 (245)
++|...... . ...+.|.|+....+||+|+|+|+++ +++|++||+|++||+.|++... ++| ++.++||++.
T Consensus 24 ~~W~~~~~~-~--g~~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~~----~~~~~~~~~~l~~a~ 95 (165)
T 2xb3_A 24 RGWVQVQVE-D--PVDVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNII----APSESGRSSALIAAT 95 (165)
T ss_dssp TTEEEECCC-T--TEEEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHTT----SCTTSSCEEEEEEEE
T ss_pred CCCeEecCC-C--CceEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHhh----cCCCCCcceEEEEee
Confidence 799964431 1 2467899998889999999999987 4799999999999999999865 444 7999999999
Q ss_pred ec----cceEEEEEEEeCCC----CCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceeeC
Q 025974 180 AS----KGFYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 245 (245)
Q Consensus 180 ~r----k~YY~lEYtvq~P~----~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v~ 245 (245)
+| +.||+|||+++.|+ +..||+|+++++.+ ||||||++|+||++|+|+++.|++|++||+|+
T Consensus 96 ~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~----g~lY~l~~sape~~w~~~~~~l~~v~~SF~v~ 165 (165)
T 2xb3_A 96 SQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVEDQFKTIVSSFTVY 165 (165)
T ss_dssp EEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEET----TEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEC
T ss_pred eeecCCceEEEEEEEEecCCCccCccccEEEEEEEEEC----CEEEEEEEecCHHHhHHHHHHHHHHHhhEEeC
Confidence 98 56999999999998 35899999999974 59999999999999999999999999999986
No 2
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.93 E-value=3.5e-31 Score=220.43 Aligned_cols=135 Identities=16% Similarity=0.248 Sum_probs=118.5
Q ss_pred cCcccccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCC--CCceEEEece
Q 025974 102 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDCK 179 (245)
Q Consensus 102 ~~W~~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~app--g~~AkLIdA~ 179 (245)
+||...++..++....++|.++...++||+|+|+|++.+ ++|++||+|++||++|++.+. ++| ++.++||++.
T Consensus 30 ~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~~~~----~~~~~~~~a~li~a~ 104 (170)
T 2lnj_A 30 NGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMKTVN----DASQGDRQAELINAE 104 (170)
Confidence 899965544333345678999999999999999999886 799999999999999999865 444 8999999999
Q ss_pred ec----cceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceeeC
Q 025974 180 AS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 245 (245)
Q Consensus 180 ~r----k~YY~lEYtvq~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v~ 245 (245)
+| +.||++||+++.|+...||.|+++++.+ ||||||++|+||++|+|.++.|++|++||+|+
T Consensus 105 ~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~----gklY~l~~~ape~~w~~~~~~l~~v~~SF~v~ 170 (170)
T 2lnj_A 105 ARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNR----GKLITFDLSTAEDRWDTVKSLFDTVASSFHVY 170 (170)
Confidence 98 5699999999999445899999988864 59999999999999999999999999999985
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.95 E-value=1.5e-27 Score=202.06 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=101.4
Q ss_pred cCccccc-ccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCC-----C------
Q 025974 102 NDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRP-----P------ 169 (245)
Q Consensus 102 ~~W~~~~-G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~ap-----p------ 169 (245)
++|.... -...| -.+.|..+...++||+|+|+|++. ++|++||+|++|++.+...+.+..++| +
T Consensus 23 ~~W~~~~~~~~~G--~~~~f~d~~~~~~nvsV~v~p~~~--~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~ 98 (177)
T 1v2b_A 23 SKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITPTDK--KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDA 98 (177)
T ss_dssp TTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEECSC--SSGGGGCSHHHHHHHTGGGC------------------C
T ss_pred CCCcccccccCCC--ceEEEeCCcCCCccEEEEEeCCCC--CChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCc
Confidence 6898211 11122 235666667889999999999954 799999999996444433332222232 2
Q ss_pred CCceEEEeceec----cceEEEEEEEeCCCC--CceeEEEEEEeecCCccceEEEEeccccchhhHHH-HHHHHHHhcce
Q 025974 170 GVAAKLIDCKAS----KGFYYIEYTLQNPGE--SRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVASF 242 (245)
Q Consensus 170 g~~AkLIdA~~r----k~YY~lEYtvq~P~~--~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kv-k~~f~~vVdSF 242 (245)
++.++||+|.+| +.||+|||.++.|+. ..||+|++++|.+ ||||||++|+||+||+|. ++.|++|++||
T Consensus 99 ~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~----gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF 174 (177)
T 1v2b_A 99 VAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAGDKRWFKGAKKFVENTATSF 174 (177)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEEGGGCSTTTTHHHHHHHHTC
T ss_pred ccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEEC----CEEEEEEEecCHHHhhhhHHHHHHHHHhhe
Confidence 388999999999 569999999999972 4799999999975 599999999999999995 99999999999
Q ss_pred eeC
Q 025974 243 RFI 245 (245)
Q Consensus 243 ~v~ 245 (245)
+|.
T Consensus 175 ~v~ 177 (177)
T 1v2b_A 175 SLA 177 (177)
T ss_dssp EEC
T ss_pred ecC
Confidence 983
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=97.25 E-value=0.0037 Score=50.35 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=74.2
Q ss_pred EEEecCCC-CCC--ceEEEEEecCCCCccccccCCChHHHHHHHhhccccCCCCCCC-CceEEEeceec-cceEEEEEEE
Q 025974 117 ITAFYPQE-ASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG-VAAKLIDCKAS-KGFYYIEYTL 191 (245)
Q Consensus 117 V~AF~P~~-~~~--eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~rs~~appg-~~AkLIdA~~r-k~YY~lEYtv 191 (245)
+.+|+++. ... .|+.|...++++| .+.++..+.-++.+-+ .-|+ +...+-...-+ ..--.+||+-
T Consensus 24 ~nv~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~~---~l~~y~~~~~~~~~l~g~~a~~~e~~~ 93 (148)
T 1tu1_A 24 INIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEK---QLPGFKLHKRWDINIHGHAAVLLDYQW 93 (148)
T ss_dssp BEEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHH---HSTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHHh---hCcCcEEeeeEeEEEcCCcEEEEEEEE
Confidence 45555443 222 5666666677766 3566666665555421 1122 11111111112 2457888888
Q ss_pred eCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHHHHHHHHHhcceee
Q 025974 192 QNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 244 (245)
Q Consensus 192 q~P~~~~RH~la~Vav~~nG~~grLYTltaq~~E~rW~Kvk~~f~~vVdSF~v 244 (245)
..++. .+|-+-++.+-. + ++|.||..++...|+..+..++.|++||++
T Consensus 94 ~~~g~-~~~Q~q~~~~~~-~---~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~ 141 (148)
T 1tu1_A 94 QREGR-DLMLRQVFIERR-P---AVLITTLTTTPADLPHHEPAWKQAMQTLVP 141 (148)
T ss_dssp EETTE-EEEEEEEEECCS-S---SEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred ccCCE-EEEEEEEEEEEC-C---eEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence 87774 799998866643 2 999999999999999999999999999985
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=96.29 E-value=0.11 Score=43.66 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=90.5
Q ss_pred cccchhhhHhHh------cCcccccccCCcceeEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHhhcccc
Q 025974 90 SFPAIVSYALAA------NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 163 (245)
Q Consensus 90 ~~p~~~~~a~Ae------~~W~~~~G~~sg~k~V~AF~P~~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~Lv~~v~r 163 (245)
.||+.+-.|+.- .||+......+ +=-+..=.|++.=..||-|.+..++.|+ | ++.-..|-+.+.
T Consensus 8 ~~ps~~fp~~p~~~v~~P~gWe~~~~~~~-~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~~- 77 (161)
T 3lyd_A 8 RYPSTEFPALTGFTVPIPETWQPDPTMGT-QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRAT- 77 (161)
T ss_dssp EESCSSSCCCCEEEEECCTTEEECTTSSS-SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHHT-
T ss_pred eCCccccCCCceeeccCCCCceEcCCCCc-eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHHh-
Confidence 455444444432 89997655444 3222222223334789999999998885 1 444334433221
Q ss_pred CCCCCCCCceEEEeceec--cceEEEEEEEeCCCCCceeE--EEEEEeecCCccceEEEE--eccccchhhHHHHHHHHH
Q 025974 164 SWRRPPGVAAKLIDCKAS--KGFYYIEYTLQNPGESRKHL--FSAIGMASNGWYNRLYTV--TGQFVEEESEKYGSNIEK 237 (245)
Q Consensus 164 s~~appg~~AkLIdA~~r--k~YY~lEYtvq~P~~~~RH~--la~Vav~~nG~~grLYTl--taq~~E~rW~Kvk~~f~~ 237 (245)
+-|+.+-.-..-.+. ..-|.+||.-..|.- ..+. +.++.|.++| ..|.+ |++|.+..-+.+.+.|++
T Consensus 78 ---~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~~---v~~vv~lt~T~~~~q~~~~~~d~q~ 150 (161)
T 3lyd_A 78 ---QLPDYAERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHPH---AVDIIQLTATCAGDQTADYWDTFRL 150 (161)
T ss_dssp ---TSTTCEEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECSS---CEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred ---hCCCcEeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecCC---EEEEEEEEEEeccccchHHHHHHHH
Confidence 225655444444444 348999999988875 4563 5667888764 66666 999999999999999999
Q ss_pred HhcceeeC
Q 025974 238 AVASFRFI 245 (245)
Q Consensus 238 vVdSF~v~ 245 (245)
|++|++|.
T Consensus 151 iv~sl~v~ 158 (161)
T 3lyd_A 151 MHADLTVQ 158 (161)
T ss_dssp HHHTCEEE
T ss_pred HhheeEec
Confidence 99999973
No 6
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=17.66 E-value=61 Score=22.20 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=12.2
Q ss_pred CchhHHHHHHHhhhhhh
Q 025974 73 SRTKRREVMFQLAFTAC 89 (245)
Q Consensus 73 ~~~~RR~~Ll~~~~~a~ 89 (245)
+...||++|..+.+.+.
T Consensus 7 pdm~RRqfln~l~~G~~ 23 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGA 23 (49)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 44899999987665443
No 7
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=15.31 E-value=56 Score=20.79 Aligned_cols=14 Identities=36% Similarity=0.283 Sum_probs=10.5
Q ss_pred hhHHHHHHHhhhhh
Q 025974 75 TKRREVMFQLAFTA 88 (245)
Q Consensus 75 ~~RR~~Ll~~~~~a 88 (245)
+.||++|-+.++++
T Consensus 3 lsRR~FLK~~aaa~ 16 (35)
T 2pq4_B 3 LSRRSFMKANAVAA 16 (35)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 57999998766544
No 8
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=12.08 E-value=47 Score=19.79 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=14.8
Q ss_pred ceEEEEeccccchhhHH
Q 025974 214 NRLYTVTGQFVEEESEK 230 (245)
Q Consensus 214 grLYTltaq~~E~rW~K 230 (245)
||.|=+|+.+.|..|++
T Consensus 10 g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 10 GRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp SSEEEEETTTTEEESSC
T ss_pred CCeEEEECCCCCEeccC
Confidence 58999999999999963
No 9
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=12.06 E-value=40 Score=21.86 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=10.9
Q ss_pred cccceeeeeeecC
Q 025974 39 NQYKKQFVFCCKK 51 (245)
Q Consensus 39 ~~~~~~~~~~~~~ 51 (245)
.+|.-|+.+||..
T Consensus 8 escnvqfypccpg 20 (37)
T 3q8j_A 8 ESCNVQFYPCCPG 20 (37)
T ss_dssp SEEETTTBCBCTT
T ss_pred cccceEEecCCCC
Confidence 5789999999964
No 10
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=12.02 E-value=1.1e+02 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=25.8
Q ss_pred CCCCceEEEEEecCCCCccccccCCChHHHHHHH
Q 025974 124 EASSSSVSVVITGLGPDFTRMESFGKVEAFADTL 157 (245)
Q Consensus 124 ~~~~eNVSVVITpv~~DftsL~sfG~p~eVae~L 157 (245)
.....+|+|.++.| .+||.|.+==+|+++...|
T Consensus 4 ~~e~~~vtvlf~Di-~gft~l~~~~~~~~~~~~l 36 (190)
T 3et6_A 4 AQEHPEATVLFSDI-VGFTEIASRSSPLEVXSLL 36 (190)
T ss_dssp CEEEEEEEEEEEEE-TTHHHHTTTSCHHHHHHHH
T ss_pred ccccceEEEEEeEe-cChhHhHhhCCHHHHHHHH
Confidence 34567899999999 7889998866788876644
Done!