Query 025975
Match_columns 245
No_of_seqs 228 out of 1596
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:42:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 6E-29 1.3E-33 216.8 19.7 152 82-239 32-186 (223)
2 PF09335 SNARE_assoc: SNARE as 99.9 3.3E-22 7.1E-27 157.0 14.1 118 117-238 1-123 (123)
3 COG0586 DedA Uncharacterized m 99.8 1.4E-18 3E-23 150.2 15.5 143 96-242 15-167 (208)
4 PRK10847 hypothetical protein; 99.8 3.6E-18 7.8E-23 148.6 14.2 145 94-242 25-181 (219)
5 KOG3140 Predicted membrane pro 99.5 4.8E-14 1E-18 126.2 7.3 131 109-242 104-237 (275)
6 COG1238 Predicted membrane pro 99.4 1.9E-11 4.1E-16 101.7 14.4 140 94-241 15-158 (161)
7 PF06695 Sm_multidrug_ex: Puta 95.6 0.26 5.5E-06 39.1 10.8 95 131-229 15-119 (121)
8 PRK01844 hypothetical protein; 91.2 0.59 1.3E-05 33.8 5.0 29 132-160 3-31 (72)
9 PRK00523 hypothetical protein; 88.3 1.4 3E-05 31.9 5.0 27 134-160 6-32 (72)
10 TIGR02359 thiW thiW protein. L 83.6 21 0.00045 29.8 10.6 32 119-150 34-65 (160)
11 COG3763 Uncharacterized protei 83.3 3.3 7.2E-05 29.8 4.9 27 133-159 4-30 (71)
12 PRK09609 hypothetical protein; 80.3 18 0.0004 33.3 9.9 7 219-225 212-218 (312)
13 PF04246 RseC_MucC: Positive r 76.1 8.8 0.00019 30.5 5.9 39 123-161 81-121 (135)
14 PF03672 UPF0154: Uncharacteri 76.0 4.5 9.7E-05 28.7 3.6 23 138-160 2-24 (64)
15 PF07155 ECF-ribofla_trS: ECF- 75.3 4.7 0.0001 33.1 4.3 33 118-150 37-69 (169)
16 PRK11677 hypothetical protein; 72.7 8.1 0.00018 31.3 4.9 22 137-158 4-25 (134)
17 COG3086 RseC Positive regulato 67.0 22 0.00047 29.3 6.2 38 124-161 90-128 (150)
18 PRK13661 hypothetical protein; 65.2 12 0.00026 31.9 4.6 32 118-149 39-70 (182)
19 COG4956 Integral membrane prot 64.9 64 0.0014 30.0 9.4 23 142-164 43-65 (356)
20 PF06295 DUF1043: Protein of u 61.0 13 0.00028 29.6 3.9 23 138-160 1-23 (128)
21 PRK10862 SoxR reducing system 59.3 29 0.00062 28.6 5.8 24 137-160 104-127 (154)
22 PF12822 DUF3816: Protein of u 56.4 10 0.00022 30.9 2.7 32 118-149 30-61 (172)
23 PF09512 ThiW: Thiamine-precur 51.3 33 0.00071 28.4 4.8 38 120-157 32-86 (150)
24 PRK12821 aspartyl/glutamyl-tRN 51.2 23 0.00049 34.4 4.3 28 120-147 99-126 (477)
25 PF09335 SNARE_assoc: SNARE as 49.7 77 0.0017 23.8 6.5 34 128-161 8-41 (123)
26 PRK14472 F0F1 ATP synthase sub 45.3 29 0.00064 28.8 3.8 43 123-167 7-49 (175)
27 TIGR02121 Na_Pro_sym sodium/pr 42.9 3.2E+02 0.0068 26.3 17.1 27 208-238 150-176 (487)
28 PF05915 DUF872: Eukaryotic pr 42.2 60 0.0013 25.5 4.8 6 116-121 87-92 (115)
29 COG1238 Predicted membrane pro 41.0 57 0.0012 27.2 4.8 50 194-243 31-80 (161)
30 PF03613 EIID-AGA: PTS system 39.3 1.7E+02 0.0037 26.3 7.9 52 126-179 129-181 (264)
31 TIGR00261 traB pheromone shutd 39.1 3.5E+02 0.0075 25.7 12.4 36 54-92 240-275 (380)
32 PF01148 CTP_transf_1: Cytidyl 36.7 28 0.0006 29.9 2.4 25 136-160 132-156 (259)
33 COG0591 PutP Na+/proline sympo 36.7 4.1E+02 0.0088 25.8 13.6 38 199-238 134-175 (493)
34 PF12732 YtxH: YtxH-like prote 35.3 64 0.0014 22.8 3.8 27 140-166 6-32 (74)
35 PF01102 Glycophorin_A: Glycop 35.1 76 0.0016 25.3 4.4 25 126-156 67-91 (122)
36 PRK09395 actP acetate permease 33.6 4.7E+02 0.01 25.7 14.0 28 207-238 175-202 (551)
37 COG1030 NfeD Membrane-bound se 33.6 2.7E+02 0.0059 27.0 8.6 32 25-57 201-232 (436)
38 PF11364 DUF3165: Protein of u 33.3 2E+02 0.0044 21.3 7.5 51 70-126 11-61 (81)
39 PF09512 ThiW: Thiamine-precur 32.0 2.9E+02 0.0063 22.9 7.4 46 113-158 65-116 (150)
40 PF06695 Sm_multidrug_ex: Puta 32.0 1.4E+02 0.0031 23.4 5.6 44 137-180 17-60 (121)
41 COG0575 CdsA CDP-diglyceride s 31.7 32 0.00068 30.7 2.0 33 136-168 136-169 (265)
42 PRK11624 cdsA CDP-diglyceride 31.1 31 0.00068 31.2 1.9 33 137-169 155-188 (285)
43 PRK15419 proline:sodium sympor 30.8 5E+02 0.011 25.1 14.3 26 209-238 155-180 (502)
44 PRK13453 F0F1 ATP synthase sub 30.6 1.6E+02 0.0034 24.4 5.9 20 148-167 30-49 (173)
45 COG4158 Predicted ABC-type sug 30.5 4.2E+02 0.009 24.1 8.7 23 120-142 107-129 (329)
46 PRK00944 hypothetical protein; 29.2 3.7E+02 0.008 23.1 8.5 25 136-160 129-153 (195)
47 PF13807 GNVR: G-rich domain o 28.0 95 0.0021 22.3 3.7 24 117-140 55-78 (82)
48 PF05552 TM_helix: Conserved T 27.8 52 0.0011 21.8 2.1 23 143-165 17-39 (53)
49 PF03672 UPF0154: Uncharacteri 27.2 95 0.0021 22.0 3.3 28 143-170 3-31 (64)
50 COG3105 Uncharacterized protei 27.0 1.7E+02 0.0036 23.8 5.1 25 136-160 8-32 (138)
51 PF12072 DUF3552: Domain of un 26.6 1.1E+02 0.0025 26.0 4.5 25 136-160 3-27 (201)
52 PRK11463 fxsA phage T7 F exclu 26.5 3.5E+02 0.0076 22.0 7.2 47 121-167 17-63 (148)
53 PF07290 DUF1449: Protein of u 26.1 4.3E+02 0.0093 22.8 8.5 34 135-168 93-126 (202)
54 PF04367 DUF502: Protein of un 25.6 2.3E+02 0.0051 21.5 5.7 30 141-170 7-36 (108)
55 KOG3415 Putative Rab5-interact 25.3 2.3E+02 0.005 22.5 5.5 26 134-159 66-91 (129)
56 COG4064 MtrG Tetrahydromethano 25.0 1.4E+02 0.003 21.6 3.8 24 125-148 49-72 (75)
57 PF10319 7TM_GPCR_Srj: Serpent 24.7 4.6E+02 0.01 24.3 8.3 92 129-228 194-293 (310)
58 PHA02844 putative transmembran 24.5 1.1E+02 0.0023 22.4 3.2 7 50-56 46-52 (75)
59 PF04226 Transgly_assoc: Trans 24.2 2.1E+02 0.0046 18.7 4.6 22 136-157 25-46 (48)
60 KOG4544 Uncharacterized conser 24.2 67 0.0015 26.2 2.4 52 85-136 49-100 (144)
61 PRK14395 membrane protein; Pro 23.9 1.5E+02 0.0032 25.5 4.6 39 138-176 6-45 (195)
62 COG1177 PotC ABC-type spermidi 23.3 5.5E+02 0.012 23.1 10.1 99 126-224 65-173 (267)
63 PF05915 DUF872: Eukaryotic pr 23.1 2.7E+02 0.0058 21.8 5.6 6 54-59 40-45 (115)
64 PRK14402 membrane protein; Pro 23.1 1.6E+02 0.0035 25.3 4.7 63 135-197 5-76 (198)
65 PRK14399 membrane protein; Pro 23.1 1.7E+02 0.0037 26.4 5.0 51 128-178 4-56 (258)
66 COG4732 Predicted membrane pro 22.9 1.7E+02 0.0037 24.4 4.6 18 113-130 74-92 (177)
67 COG2261 Predicted membrane pro 22.8 2.3E+02 0.005 21.0 4.8 36 123-158 40-80 (82)
68 PF09945 DUF2177: Predicted me 22.8 4E+02 0.0087 21.3 8.3 11 122-132 75-85 (128)
69 PRK14404 membrane protein; Pro 22.4 1.1E+02 0.0025 26.4 3.7 42 137-178 4-46 (201)
70 PRK09430 djlA Dna-J like membr 22.3 1.4E+02 0.0031 26.7 4.5 18 142-159 17-34 (267)
71 TIGR02762 TraL_TIGR type IV co 22.2 3.3E+02 0.0072 20.4 5.8 29 120-150 22-50 (95)
72 PF03773 DUF318: Predicted per 22.0 5.9E+02 0.013 22.9 12.1 9 152-160 277-285 (307)
73 PF14163 SieB: Superinfection 21.8 3.6E+02 0.0077 21.6 6.4 28 115-142 13-44 (151)
74 COG2426 Predicted membrane pro 21.6 4.4E+02 0.0096 21.4 9.0 107 130-236 18-136 (142)
75 PRK14393 membrane protein; Pro 21.2 1.5E+02 0.0032 25.5 4.1 60 138-197 7-75 (194)
76 PRK14407 membrane protein; Pro 21.2 1.4E+02 0.0031 26.1 4.1 45 134-178 6-52 (219)
77 PF02674 Colicin_V: Colicin V 21.2 4E+02 0.0086 20.7 13.9 103 123-233 8-114 (146)
78 PF01914 MarC: MarC family int 20.8 5.3E+02 0.011 22.0 7.5 56 112-168 118-174 (203)
79 PF13198 DUF4014: Protein of u 20.4 2.8E+02 0.006 20.1 4.6 17 83-99 42-58 (72)
80 PF09605 Trep_Strep: Hypotheti 20.3 1.3E+02 0.0029 25.3 3.6 27 134-160 156-182 (186)
81 PRK12488 acetate permease; Pro 20.3 8.3E+02 0.018 24.0 13.3 21 217-238 180-200 (549)
82 KOG2262 Sexual differentiation 20.2 1.3E+02 0.0027 31.0 3.9 17 50-66 71-87 (761)
83 PRK14400 membrane protein; Pro 20.1 2E+02 0.0043 24.8 4.7 62 135-196 7-78 (201)
84 TIGR00844 c_cpa1 na(+)/h(+) an 20.1 1E+03 0.023 25.1 16.3 21 219-239 292-312 (810)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6e-29 Score=216.83 Aligned_cols=152 Identities=20% Similarity=0.349 Sum_probs=133.9
Q ss_pred hhhHHHHHHHh-hccchhHHHHHHHHHHhhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 82 DKEVIPIINWE-TTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 82 ~~~l~~l~~w~-~~~~~~pv~~ill~~~~~~~p~~~lP~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
..+.+.+.+|+ +.+.++|+.+.+++...+.+ .++|++++++++|++||++.|++++++|+++||+++|+++|++|++
T Consensus 32 ~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~--~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~ 109 (223)
T COG0398 32 LLDPETLREWIQAYGALGPLVFFILLYLVATL--PIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRD 109 (223)
T ss_pred ccCHHHHHHHHHHcCchHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455667885 77899998854444444343 4589999999999999999999999999999999999999999998
Q ss_pred -HHHhhhhchHHHHHHHHHhcCCCchhHHHhHHhhccc-cchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhh
Q 025975 161 -IQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVF 238 (245)
Q Consensus 161 -v~~~l~~~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P-~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~ 238 (245)
++++.+++++.+++++..+++ |++.++++|++| +|++++||+||++++|+++|.++|.+|++|++++|+++|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~----g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~ 185 (223)
T COG0398 110 WVLKFVGGKEKVQRIDAGLERN----GFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA 185 (223)
T ss_pred HHHHHhcccHHHHHHHHHHHhC----ChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 888988888899999999875 889999999999 79999999999999999999999999999999999999964
Q ss_pred h
Q 025975 239 G 239 (245)
Q Consensus 239 l 239 (245)
.
T Consensus 186 ~ 186 (223)
T COG0398 186 F 186 (223)
T ss_pred H
Confidence 3
No 2
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.89 E-value=3.3e-22 Score=157.02 Aligned_cols=118 Identities=29% Similarity=0.452 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhhhchHHHH---HHHHHhcCCCchhHHHhHH
Q 025975 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAA---ILRAAGEGNWFHQFRTVAL 192 (245)
Q Consensus 117 lP~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~~~~~~~~---l~~~~~~~~w~~g~~~v~l 192 (245)
+|++++++++|++||++.|++++.+|+++|+.++|++||+++++ .+++..++++.++ .++..++ ||...+++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~l~~ 76 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQK----YGFWVLFL 76 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhh----hhHHHHHH
Confidence 59999999999999999999999999999999999999999965 7666655555555 5555554 58999999
Q ss_pred hhccc-cchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhh
Q 025975 193 IRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVF 238 (245)
Q Consensus 193 ~Rl~P-~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~ 238 (245)
.|++| +|++++||++|++++|+++|+.++++|.+|++.+++++|+.
T Consensus 77 ~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~~ 123 (123)
T PF09335_consen 77 SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGYL 123 (123)
T ss_pred HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999 69999999999999999999999999999999999999973
No 3
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.80 E-value=1.4e-18 Score=150.19 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=119.4
Q ss_pred chhHHHHHHHHHHhhhhccccCChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhh---
Q 025975 96 FSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-----FGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLE--- 166 (245)
Q Consensus 96 ~~~pv~~ill~~~~~~~p~~~lP~~~l~~~aG~l-----FG~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~--- 166 (245)
+..+..++..+.....+...++|++++++++|++ ++++...+.+++|+++|+.+.|++||++|++ .+++.+
T Consensus 15 ~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~ 94 (208)
T COG0586 15 LGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRL 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhcc
Confidence 3344666666655434444569999999999998 5567889999999999999999999999988 555544
Q ss_pred -hchHHHHHHHHHhcCCCchhHHHhHHhhccccchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 025975 167 -KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPI 242 (245)
Q Consensus 167 -~~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~l 242 (245)
++++.++-++.++| ||.+++++.|++|.-+++++..||+++||+++|.+.+++|.+.|..++++.|..+++-
T Consensus 95 ~~~~~l~~a~~~f~r----~G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~ 167 (208)
T COG0586 95 LKRKKLDKAELLFER----HGLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEV 167 (208)
T ss_pred CCHHHHHHHHHHHHH----cCchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456666677776 6899999999999889999999999999999999999999999999999999988753
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.78 E-value=3.6e-18 Score=148.64 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=114.2
Q ss_pred ccchhH-HHHHHHHHHhhhhccccCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHh
Q 025975 94 TTFSTP-VLAVLVFASVALFPTLLLPSSPSMWVAGMTFG-------YGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGW 164 (245)
Q Consensus 94 ~~~~~p-v~~ill~~~~~~~p~~~lP~~~l~~~aG~lFG-------~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~ 164 (245)
.+.|++ +++++.+....+.+..++|++.+.+++|++.+ .+..++++++|+++|+.++|++||++|++ +.++
T Consensus 25 ~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~ 104 (219)
T PRK10847 25 YGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNP 104 (219)
T ss_pred hhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhcc
Confidence 455554 35555554432223345899999999998865 45678999999999999999999999998 4432
Q ss_pred hh---hchHHHHHHHHHhcCCCchhHHHhHHhhccccchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhh
Q 025975 165 LE---KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLP 241 (245)
Q Consensus 165 l~---~~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~ 241 (245)
.+ ++++.++.++.++| ||.+.+++.|++|.-+++++++||+++||+++|++.+.+|.++|+.+++++|..+++
T Consensus 105 ~~~~~~~~~l~~~~~~~~r----~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~ 180 (219)
T PRK10847 105 NSKIFRRSYLDKTHQFYEK----HGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGT 180 (219)
T ss_pred ccccCCHHHHHHHHHHHHH----cCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 22346666677776 588999999999976788999999999999999999999999999999999998765
Q ss_pred h
Q 025975 242 I 242 (245)
Q Consensus 242 l 242 (245)
.
T Consensus 181 ~ 181 (219)
T PRK10847 181 L 181 (219)
T ss_pred C
Confidence 3
No 5
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.49 E-value=4.8e-14 Score=126.16 Aligned_cols=131 Identities=21% Similarity=0.311 Sum_probs=109.7
Q ss_pred hhhhccccCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhhhchHHHHHHHHHhcCCCchh
Q 025975 109 VALFPTLLLPSSP-SMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAAGEGNWFHQ 186 (245)
Q Consensus 109 ~~~~p~~~lP~~~-l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~~~~~~~~l~~~~~~~~w~~g 186 (245)
......+.+|+.. +.+.+|++||.+.|.++...+++.|+++||++++.++|+ +.++...+.+.-+.+-..+++ +-
T Consensus 104 y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~~~~~~---~~ 180 (275)
T KOG3140|consen 104 YVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDVELNRN---SL 180 (275)
T ss_pred HHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhccc---ch
Confidence 3355556799654 788999999999999999999999999999999999998 788777653333333333333 24
Q ss_pred HHHhHHhhcccc-chhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 025975 187 FRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPI 242 (245)
Q Consensus 187 ~~~v~l~Rl~P~-P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~l 242 (245)
+..+++.|++|+ |+++.|+++++.++++..|++++++|.+|..++++-.|+.++++
T Consensus 181 ~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l 237 (275)
T KOG3140|consen 181 LNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASL 237 (275)
T ss_pred hhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhh
Confidence 788999999995 99999999999999999999999999999999999999988765
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.37 E-value=1.9e-11 Score=101.71 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=107.5
Q ss_pred ccchhHHHHHHHHHHhhhhccccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhh-hchH
Q 025975 94 TTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-FGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQG-WLE-KYPK 170 (245)
Q Consensus 94 ~~~~~pv~~ill~~~~~~~p~~~lP~~~l~~~aG~l-FG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v~~-~l~-~~~~ 170 (245)
+....+.+|+..+++..++| +|++++....-.. ..++.-.+++++|+++|++++|++||+.++.+.+ +.. ++++
T Consensus 15 ~~~a~~~Lf~vaF~eat~lP---~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~ 91 (161)
T COG1238 15 QAYAYAGLFIVAFLEATLLP---VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEA 91 (161)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHH
Confidence 33445567777787766666 6888754332222 6788889999999999999999999999987444 332 2333
Q ss_pred HHHHHH-HHhcCCCchhHHHhHHhhccccchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhh
Q 025975 171 KAAILR-AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLP 241 (245)
Q Consensus 171 ~~~l~~-~~~~~~w~~g~~~v~l~Rl~P~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~ 241 (245)
.++..+ ..++ +|.+.+++.-+.|+| ++++.+||..++++++|+...++|....-++.+++......
T Consensus 92 ~~~~~~~~~~r----yg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~~ 158 (161)
T COG1238 92 LEKLQEKWYRR----YGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGGE 158 (161)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 444443 3333 589999999999999 99999999999999999999999999999998888766543
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=95.57 E-value=0.26 Score=39.15 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHhhhh-chHHHHHHHHHhcCCCchhHHHhHHhhccccc---h
Q 025975 131 GYGFGFLLIMSAVAVGISLPYFIGSHFLHRI------QGWLEK-YPKKAAILRAAGEGNWFHQFRTVALIRISPFP---Y 200 (245)
Q Consensus 131 G~~~G~l~~~~g~~lGa~l~f~igR~~g~~v------~~~l~~-~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P~P---~ 200 (245)
+++..++++.+|+++...+.++.-++.-+.. ++..++ .++.++-.+..+| +|+..+++.=.+|+| -
T Consensus 15 ~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~k----yg~~GL~lFVaIPlP~TG~ 90 (121)
T PF06695_consen 15 PPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEK----YGFWGLALFVAIPLPGTGA 90 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHhCCCCcchH
Confidence 4678888999999888777766665544321 222211 1112222333443 577888877788887 5
Q ss_pred hhHHHhHhhcCCCchhHHHHHHHhHHHHH
Q 025975 201 IIYNYCAVATHVKYGPYFLGSLVGMVPEI 229 (245)
Q Consensus 201 ~~vny~aG~t~v~~~~F~~~s~iG~lP~~ 229 (245)
+.-+.+|-+.+|+.++=+.+..+|.+-..
T Consensus 91 wtgal~a~llg~~~~~~~~ai~~Gv~ia~ 119 (121)
T PF06695_consen 91 WTGALIASLLGMDKKKAFLAIFLGVLIAG 119 (121)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 66788899999999999999999977554
No 8
>PRK01844 hypothetical protein; Provisional
Probab=91.20 E-value=0.59 Score=33.81 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 132 YGFGFLLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 132 ~~~G~l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
.|..+++.+++..+|.+++|+++|+..++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778889999999999999986543
No 9
>PRK00523 hypothetical protein; Provisional
Probab=88.25 E-value=1.4 Score=31.93 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 134 FGFLLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 134 ~G~l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
..+++.+++..+|.+.+|+++|+..++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999999987553
No 10
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=83.60 E-value=21 Score=29.76 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 119 SSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (245)
Q Consensus 119 ~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~ 150 (245)
+...++++|++||||+|.+...+++.++..+.
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 56778999999999999999888888877654
No 11
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.25 E-value=3.3 Score=29.82 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025975 133 GFGFLLIMSAVAVGISLPYFIGSHFLH 159 (245)
Q Consensus 133 ~~G~l~~~~g~~lGa~l~f~igR~~g~ 159 (245)
|.+.++..++..+|...+|+++|+.-+
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~ 30 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMK 30 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777888888999997654
No 12
>PRK09609 hypothetical protein; Provisional
Probab=80.33 E-value=18 Score=33.33 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.7
Q ss_pred HHHHHhH
Q 025975 219 LGSLVGM 225 (245)
Q Consensus 219 ~~s~iG~ 225 (245)
..+..|.
T Consensus 212 ~l~~~G~ 218 (312)
T PRK09609 212 ILIISGF 218 (312)
T ss_pred HHHHHHH
Confidence 3333443
No 13
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=76.05 E-value=8.8 Score=30.52 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 025975 123 MWVAGMTFGYGFG--FLLIMSAVAVGISLPYFIGSHFLHRI 161 (245)
Q Consensus 123 ~~~aG~lFG~~~G--~l~~~~g~~lGa~l~f~igR~~g~~v 161 (245)
.+++|+..|...+ -..+.+++.+|..++|++.|++.++.
T Consensus 81 ~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~ 121 (135)
T PF04246_consen 81 ALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRL 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555554443 56788889999999999999987754
No 14
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.95 E-value=4.5 Score=28.68 Aligned_cols=23 Identities=30% Similarity=0.713 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 025975 138 LIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 138 ~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
+.+++..+|.+++|+++|+..++
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999987654
No 15
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=75.33 E-value=4.7 Score=33.06 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (245)
Q Consensus 118 P~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~ 150 (245)
|+......+|++|||..|++...+|..++..+.
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 456778899999999999999999988888743
No 16
>PRK11677 hypothetical protein; Provisional
Probab=72.73 E-value=8.1 Score=31.33 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 025975 137 LLIMSAVAVGISLPYFIGSHFL 158 (245)
Q Consensus 137 l~~~~g~~lGa~l~f~igR~~g 158 (245)
+++++|.++|.+++|+++|+..
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 5667888899999999999755
No 17
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=66.97 E-value=22 Score=29.32 Aligned_cols=38 Identities=13% Similarity=0.472 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 025975 124 WVAGMTFGYGF-GFLLIMSAVAVGISLPYFIGSHFLHRI 161 (245)
Q Consensus 124 ~~aG~lFG~~~-G~l~~~~g~~lGa~l~f~igR~~g~~v 161 (245)
+++.++++... .=.++++++.+|..++|++.|.+.|+.
T Consensus 90 ~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl 128 (150)
T COG3086 90 FLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKL 128 (150)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444332 235788899999999999999887753
No 18
>PRK13661 hypothetical protein; Provisional
Probab=65.17 E-value=12 Score=31.86 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISL 149 (245)
Q Consensus 118 P~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l 149 (245)
|+.....++|++|||..|++...+|..++..+
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll 70 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFI 70 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888877777777664
No 19
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=64.88 E-value=64 Score=30.02 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHh
Q 025975 142 AVAVGISLPYFIGSHFLHRIQGW 164 (245)
Q Consensus 142 g~~lGa~l~f~igR~~g~~v~~~ 164 (245)
.+.+|+.+.|.++-++++.+.++
T Consensus 43 ~~ligai~~~li~~~~~~~~~~~ 65 (356)
T COG4956 43 DALIGAIIFFLISFWFGKYVLNW 65 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666544333
No 20
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.96 E-value=13 Score=29.62 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 025975 138 LIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 138 ~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
++++|.++|.+++|+++|...+.
T Consensus 1 y~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHhccc
Confidence 35678888999999999986643
No 21
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=59.30 E-value=29 Score=28.58 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 137 LLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 137 l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
..+.+++.+|..++|++.|++.++
T Consensus 104 ~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 104 LAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778888889999999987664
No 22
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=56.36 E-value=10 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISL 149 (245)
Q Consensus 118 P~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l 149 (245)
|+.....++|+++||+.|.+...+...++..+
T Consensus 30 ~~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 30 FSFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888999988887777766665554
No 23
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=51.27 E-value=33 Score=28.38 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHh
Q 025975 120 SPSMWVAGMTFGYGFGF-----------------LLIMSAVAVGISLPYFIGSHF 157 (245)
Q Consensus 120 ~~l~~~aG~lFG~~~G~-----------------l~~~~g~~lGa~l~f~igR~~ 157 (245)
..+.+.+|.+.|||++. +++.-|++.|+.++=++-|+.
T Consensus 32 H~iNviaaVlLGP~ya~~~Af~~sliR~~lg~Gt~lAfPGsm~GA~laGllyr~~ 86 (150)
T PF09512_consen 32 HMINVIAAVLLGPWYAVAMAFITSLIRNLLGTGTLLAFPGSMFGALLAGLLYRKT 86 (150)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHhCCCCHHHhccchHHHHHHHHHHHHh
Confidence 34566666666666543 344445555555554444443
No 24
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=51.18 E-value=23 Score=34.44 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 120 SPSMWVAGMTFGYGFGFLLIMSAVAVGI 147 (245)
Q Consensus 120 ~~l~~~aG~lFG~~~G~l~~~~g~~lGa 147 (245)
.+...++|++|||++|.+...++-.+|.
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg~ 126 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLTV 126 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4457789999999999999999888883
No 25
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=49.74 E-value=77 Score=23.81 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 025975 128 MTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRI 161 (245)
Q Consensus 128 ~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v 161 (245)
++-|...|.....+.+.+|+.++-.+..+++|..
T Consensus 8 ~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~ 41 (123)
T PF09335_consen 8 IAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYF 41 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777763
No 26
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=45.28 E-value=29 Score=28.80 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 025975 123 MWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEK 167 (245)
Q Consensus 123 ~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v~~~l~~ 167 (245)
.++.|.+|++.+|.++..+-+++ ++.+++.+++.+++.+.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~i~Fl--il~~lL~~~l~kpi~~~l~~ 49 (175)
T PRK14472 7 ILLSGGLLSPNPGLIFWTAVTFV--IVLLILKKIAWGPILSALEE 49 (175)
T ss_pred hhhcCCccCCCHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHH
Confidence 34555567776665443333322 45555666666677777654
No 27
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=42.92 E-value=3.2e+02 Score=26.35 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=14.6
Q ss_pred hhcCCCchhHHHHHHHhHHHHHHHHHHHHhh
Q 025975 208 VATHVKYGPYFLGSLVGMVPEIFVTIYTYVF 238 (245)
Q Consensus 208 G~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~ 238 (245)
.+++++ +..+.+++ .--+.+|+..|-.
T Consensus 150 ~~~gi~---~~~~iii~-~~i~~~Yt~~GGl 176 (487)
T TIGR02121 150 STFGLD---YKTGLLIG-ALIIVIYTFFGGF 176 (487)
T ss_pred HHhCcc---HHHHHHHH-HHHHHHHHHhhhH
Confidence 345554 44444443 3356778777754
No 28
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=42.21 E-value=60 Score=25.52 Aligned_cols=6 Identities=17% Similarity=0.384 Sum_probs=3.2
Q ss_pred cCChHH
Q 025975 116 LLPSSP 121 (245)
Q Consensus 116 ~lP~~~ 121 (245)
++||.-
T Consensus 87 fIPG~Y 92 (115)
T PF05915_consen 87 FIPGFY 92 (115)
T ss_pred HhccHH
Confidence 367643
No 29
>COG1238 Predicted membrane protein [Function unknown]
Probab=41.01 E-value=57 Score=27.18 Aligned_cols=50 Identities=14% Similarity=-0.016 Sum_probs=42.7
Q ss_pred hccccchhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHHhhhhhhh
Q 025975 194 RISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTYVFGLPIL 243 (245)
Q Consensus 194 Rl~P~P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~l~~l~ 243 (245)
=+.|+|.+++=...-..+.+.+.+...+.+|+..+.++--++|+...+..
T Consensus 31 t~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~ 80 (161)
T COG1238 31 TLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFI 80 (161)
T ss_pred HhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHH
Confidence 35689999888887788899999999999999999999999998876643
No 30
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=39.25 E-value=1.7e+02 Score=26.32 Aligned_cols=52 Identities=19% Similarity=0.108 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhhhchHHHHHHHHHh
Q 025975 126 AGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAAG 179 (245)
Q Consensus 126 aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~~~~~~~~l~~~~~ 179 (245)
.|..+|+..-+++..+-...-....|..|.+.|++ +.+. ++ ...+++.+...
T Consensus 129 ~Gn~lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l-~~-~~~~~i~~~as 181 (264)
T PF03613_consen 129 QGNILGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL-QS-GLLQKITEAAS 181 (264)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHH
Confidence 34445665544444444566677788888889988 6666 33 24555555443
No 31
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=39.14 E-value=3.5e+02 Score=25.75 Aligned_cols=36 Identities=6% Similarity=0.100 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 025975 54 YWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWE 92 (245)
Q Consensus 54 ~w~kl~~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~w~ 92 (245)
+|...++-+++++++++..+ +..+ .+..+..+..|+
T Consensus 240 k~~~~~i~~~i~~~~~~~~~-~~~~--~~~~~~~~~~W~ 275 (380)
T TIGR00261 240 KVLSYLIAISIILLFVMISF-YLNG--FEFLYKNLKLWI 275 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCc--HHHHHHHHHHHH
Confidence 45554455555554442222 2222 133455667785
No 32
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=36.74 E-value=28 Score=29.94 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 136 FLLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 136 ~l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
.+..++....|...+|+.||++||.
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566677888999999999999986
No 33
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=36.67 E-value=4.1e+02 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=22.0
Q ss_pred chhhHHHhHhh----cCCCchhHHHHHHHhHHHHHHHHHHHHhh
Q 025975 199 PYIIYNYCAVA----THVKYGPYFLGSLVGMVPEIFVTIYTYVF 238 (245)
Q Consensus 199 P~~~vny~aG~----t~v~~~~F~~~s~iG~lP~~~~~~~~G~~ 238 (245)
||...-+.++- .-.. -+|..+..++ ...+.+|+.+|-.
T Consensus 134 ~yia~ql~~~~~~~~~~~g-i~~~~~~~~~-~~~v~~Yt~~gG~ 175 (493)
T COG0591 134 PYIALQLVAGGLLLSLLFG-ISYVTGILIG-ALIVALYTFLGGL 175 (493)
T ss_pred HHHHHHHHHHHHHhhhhcC-CCHHHHHHHH-HHHHHHHHHHcCh
Confidence 55555444443 2233 5777777665 3466788887754
No 34
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=35.32 E-value=64 Score=22.84 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 025975 140 MSAVAVGISLPYFIGSHFLHRIQGWLE 166 (245)
Q Consensus 140 ~~g~~lGa~l~f~igR~~g~~v~~~l~ 166 (245)
.+|+.+|+.++++++-.=|++.++.+.
T Consensus 6 l~Ga~~Ga~~glL~aP~sG~e~R~~l~ 32 (74)
T PF12732_consen 6 LAGAAAGAAAGLLFAPKSGKETREKLK 32 (74)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 457788888888888777766555554
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.09 E-value=76 Score=25.29 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 126 AGMTFGYGFGFLLIMSAVAVGISLPYFIGSH 156 (245)
Q Consensus 126 aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~ 156 (245)
+|.+||...|.+..+ ..+.|++.|.
T Consensus 67 ~~Ii~gv~aGvIg~I------lli~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII------LLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred eehhHHHHHHHHHHH------HHHHHHHHHH
Confidence 445555554543322 2567777554
No 36
>PRK09395 actP acetate permease; Provisional
Probab=33.64 E-value=4.7e+02 Score=25.68 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=15.3
Q ss_pred HhhcCCCchhHHHHHHHhHHHHHHHHHHHHhh
Q 025975 207 AVATHVKYGPYFLGSLVGMVPEIFVTIYTYVF 238 (245)
Q Consensus 207 aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~ 238 (245)
..+++++ |..+.+++. --+.+|+..|-.
T Consensus 175 ~~~~gi~---~~~~ili~~-~i~~iYt~~GGm 202 (551)
T PRK09395 175 QLLFGLN---YHVAVVLVG-VLMMVYVLFGGM 202 (551)
T ss_pred HHHhCCC---HHHHHHHHH-HHHHHHHhhcch
Confidence 3445554 445554443 356778777743
No 37
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=33.63 E-value=2.7e+02 Score=27.04 Aligned_cols=32 Identities=13% Similarity=0.369 Sum_probs=18.7
Q ss_pred CCCCCeeeeccCCCCCCCCCCCCccccHHHHHH
Q 025975 25 NNKGDYLKLREYEEGEPGSPRRWSCGKVWYWVK 57 (245)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~k 57 (245)
+.++-++.|...+.+..+..++.+ -++..|+.
T Consensus 201 ~~~~~~~~L~~~~~~~~~~~ps~~-~~ll~~It 232 (436)
T COG1030 201 RVAGKLVTLQTTNAPVETLEPSWR-ERLLNWIT 232 (436)
T ss_pred ccccceEEEEecCceeEecCccHH-HHHHHHhc
Confidence 466778888766665544443444 34566663
No 38
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=33.32 E-value=2e+02 Score=21.29 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCChhhHHHHHHHhhccchhHHHHHHHHHHhhhhccccCChHHHHHHH
Q 025975 70 AVFIKWVGPFFMDKEVIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVA 126 (245)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~l~~w~~~~~~~pv~~ill~~~~~~~p~~~lP~~~l~~~a 126 (245)
+.+|.+-. +|+++...+-+ +.-+.+..+++.+...++..+-.|.+.+..++
T Consensus 11 ~~~YiF~a----PksIr~Tln~i--~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~ 61 (81)
T PF11364_consen 11 LLYYIFMA----PKSIRGTLNMI--GLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLA 61 (81)
T ss_pred HHHHHHHC----cHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33455544 47777666643 22233333333333344555567887665443
No 39
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=32.03 E-value=2.9e+02 Score=22.87 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=29.3
Q ss_pred ccccCChHHH-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhH
Q 025975 113 PTLLLPSSPS-MWVAGMTFGYGFGFLLIMSA-----VAVGISLPYFIGSHFL 158 (245)
Q Consensus 113 p~~~lP~~~l-~~~aG~lFG~~~G~l~~~~g-----~~lGa~l~f~igR~~g 158 (245)
+.+.+|++.+ .+++|++|-...-...+.+| ..+|+.++|-+++++.
T Consensus 65 t~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~ 116 (150)
T PF09512_consen 65 TLLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFM 116 (150)
T ss_pred CHHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4456787665 77788887654444445455 4566777777777654
No 40
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=32.03 E-value=1.4e+02 Score=23.38 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhchHHHHHHHHHhc
Q 025975 137 LLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGE 180 (245)
Q Consensus 137 l~~~~g~~lGa~l~f~igR~~g~~v~~~l~~~~~~~~l~~~~~~ 180 (245)
..+.+-+.+|+.+.-.+--.+.+++.+++++++..+++.+..++
T Consensus 17 ~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~ 60 (121)
T PF06695_consen 17 WEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEK 60 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46666777888887777777777788887776666555544443
No 41
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=31.72 E-value=32 Score=30.68 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHhhhhc
Q 025975 136 FLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKY 168 (245)
Q Consensus 136 ~l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~~~ 168 (245)
.++..++...+.+.+|+.||.+|++ .....+.+
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~ 169 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPK 169 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCC
Confidence 4556668888999999999999986 44444443
No 42
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=31.14 E-value=31 Score=31.24 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-HHHhhhhch
Q 025975 137 LLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYP 169 (245)
Q Consensus 137 l~~~~g~~lGa~l~f~igR~~g~~-v~~~l~~~~ 169 (245)
+...+..-.+.+.+|+.||.+||+ +-..++.++
T Consensus 155 l~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkK 188 (285)
T PRK11624 155 LYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGK 188 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCC
Confidence 344445667889999999999985 555555443
No 43
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=30.80 E-value=5e+02 Score=25.10 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=15.3
Q ss_pred hcCCCchhHHHHHHHhHHHHHHHHHHHHhh
Q 025975 209 ATHVKYGPYFLGSLVGMVPEIFVTIYTYVF 238 (245)
Q Consensus 209 ~t~v~~~~F~~~s~iG~lP~~~~~~~~G~~ 238 (245)
+++++ |..+.+++ .--+.+|+.+|-.
T Consensus 155 ~~gi~---~~~~iii~-~~iv~iYt~~GGl 180 (502)
T PRK15419 155 TFGMS---YETALWAG-AAATILYTFIGGF 180 (502)
T ss_pred HhCCC---HHHHHHHH-HHHHHHHHHhhhH
Confidence 45555 44555444 3357888888754
No 44
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=30.55 E-value=1.6e+02 Score=24.44 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHHHHHhhhh
Q 025975 148 SLPYFIGSHFLHRIQGWLEK 167 (245)
Q Consensus 148 ~l~f~igR~~g~~v~~~l~~ 167 (245)
++.+++.|++.+++.+.+++
T Consensus 30 iL~~lL~~~l~~pi~~~l~~ 49 (173)
T PRK13453 30 VLLALLKKFAWGPLKDVMDK 49 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677776654
No 45
>COG4158 Predicted ABC-type sugar transport system, permease component [General function prediction only]
Probab=30.49 E-value=4.2e+02 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025975 120 SPSMWVAGMTFGYGFGFLLIMSA 142 (245)
Q Consensus 120 ~~l~~~aG~lFG~~~G~l~~~~g 142 (245)
.+..+++|..+|...|.+++.++
T Consensus 107 ~P~AlLaGl~~G~~NGlLva~~~ 129 (329)
T COG4158 107 IPAALLAGLLLGLFNGLLVAYAG 129 (329)
T ss_pred chHHHHHHHHHHhhhhHHHHHcC
Confidence 45788999999999999998877
No 46
>PRK00944 hypothetical protein; Provisional
Probab=29.21 E-value=3.7e+02 Score=23.09 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 136 FLLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 136 ~l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
.+++.++-++.+.++|++++++...
T Consensus 129 SVlNSv~D~~~M~~GF~~A~rlPv~ 153 (195)
T PRK00944 129 SILNSVMDTLAMVLGFLFAARLPVW 153 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4688889999999999999998876
No 47
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=28.04 E-value=95 Score=22.30 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH
Q 025975 117 LPSSPSMWVAGMTFGYGFGFLLIM 140 (245)
Q Consensus 117 lP~~~l~~~aG~lFG~~~G~l~~~ 140 (245)
-|...+.++.|.++|...|+.+++
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAF 78 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888887776654
No 48
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=27.75 E-value=52 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Q 025975 143 VAVGISLPYFIGSHFLHRIQGWL 165 (245)
Q Consensus 143 ~~lGa~l~f~igR~~g~~v~~~l 165 (245)
..+++.+-+.+|.+..+.+++.+
T Consensus 17 ~iv~AilIl~vG~~va~~v~~~~ 39 (53)
T PF05552_consen 17 NIVGAILILIVGWWVAKFVRKLV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665444443
No 49
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.20 E-value=95 Score=21.98 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHH-HHHhhhhchH
Q 025975 143 VAVGISLPYFIGSHFLHR-IQGWLEKYPK 170 (245)
Q Consensus 143 ~~lGa~l~f~igR~~g~~-v~~~l~~~~~ 170 (245)
..++-+++..+|-++.|+ .++.++++|.
T Consensus 3 iilali~G~~~Gff~ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 345556666666666666 6677766653
No 50
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.02 E-value=1.7e+02 Score=23.76 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 136 FLLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 136 ~l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
..+..+|-++|-+++|+++|..-+.
T Consensus 8 W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 8 WEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchh
Confidence 3567778888999999999975543
No 51
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=26.61 E-value=1.1e+02 Score=25.97 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 136 FLLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 136 ~l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
+++++++..+|..++|++.++..+.
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~ 27 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRK 27 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777888888887776653
No 52
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=26.50 E-value=3.5e+02 Score=22.04 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 025975 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEK 167 (245)
Q Consensus 121 ~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v~~~l~~ 167 (245)
...+..|-..|.++.+++..+.+++|..+.-.-|+...++.++..++
T Consensus 17 ~~~i~v~~~iG~~~tl~lvi~t~~lG~~l~r~~G~~~l~~~~~~~~~ 63 (148)
T PRK11463 17 AVFIAVASVIGVGWTLLLVILTSVLGVLLARSQGFKTLLRAQRKLAR 63 (148)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
No 53
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=26.11 E-value=4.3e+02 Score=22.80 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 025975 135 GFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168 (245)
Q Consensus 135 G~l~~~~g~~lGa~l~f~igR~~g~~v~~~l~~~ 168 (245)
+.+-.++...+...++.++.|+.++.+.|.+.|.
T Consensus 93 ~~lp~~l~~~~al~~sl~~~~~~~~~la~ilp~~ 126 (202)
T PF07290_consen 93 GPLPAWLAAPVALFLSLFFTRYLGRPLARILPKD 126 (202)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 3344445555666778889999999888887654
No 54
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=25.56 E-value=2.3e+02 Score=21.53 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhchH
Q 025975 141 SAVAVGISLPYFIGSHFLHRIQGWLEKYPK 170 (245)
Q Consensus 141 ~g~~lGa~l~f~igR~~g~~v~~~l~~~~~ 170 (245)
+-..+|....-.++|++.+..++.++|-|-
T Consensus 7 ~i~~iG~l~~~~~g~~l~~~~e~ll~riP~ 36 (108)
T PF04367_consen 7 LIFLIGLLARNYFGKWLLNWLERLLQRIPL 36 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 344556666677777777767777776554
No 55
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.34 E-value=2.3e+02 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.499 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 025975 134 FGFLLIMSAVAVGISLPYFIGSHFLH 159 (245)
Q Consensus 134 ~G~l~~~~g~~lGa~l~f~igR~~g~ 159 (245)
.|++....=..++|.+.|.-...+-+
T Consensus 66 ~G~l~iv~f~~issgIvy~y~~~~~~ 91 (129)
T KOG3415|consen 66 VGFLGIVLFLGISSGIVYLYYANFLK 91 (129)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 35544444455666677766665544
No 56
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=25.03 E-value=1.4e+02 Score=21.57 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 125 VAGMTFGYGFGFLLIMSAVAVGIS 148 (245)
Q Consensus 125 ~aG~lFG~~~G~l~~~~g~~lGa~ 148 (245)
=.|.+||.+.|.+++++-..+|+.
T Consensus 49 DIGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 49 DIGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888887777776666554
No 57
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=24.71 E-value=4.6e+02 Score=24.26 Aligned_cols=92 Identities=14% Similarity=0.266 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-hhchHHHHHHHHHhcCCCchhHHHhHHhhccc-c----chhh
Q 025975 129 TFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWL-EKYPKKAAILRAAGEGNWFHQFRTVALIRISP-F----PYII 202 (245)
Q Consensus 129 lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v~~~l-~~~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P-~----P~~~ 202 (245)
.+-.|.|.++.++=++.+..+-+.+|++.-+++++.- .-.+|-++++ ++ -++++..-=.+| + |-.+
T Consensus 194 v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~~~mS~~T~~lq----~q----L~~AL~vQT~IPi~vsf~Pc~~ 265 (310)
T PF10319_consen 194 VFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMSSTMSKKTKRLQ----RQ----LFKALIVQTVIPICVSFSPCVL 265 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHhHHHHH----HH----HHHHHHHHHHhHHHHhhccHHH
Confidence 4557888888888888888888888887666543221 1111222332 21 345555555555 1 3333
Q ss_pred HHH--hHhhcCCCchhHHHHHHHhHHHH
Q 025975 203 YNY--CAVATHVKYGPYFLGSLVGMVPE 228 (245)
Q Consensus 203 vny--~aG~t~v~~~~F~~~s~iG~lP~ 228 (245)
.=| +.|+.--++-.|.-+.+++..|-
T Consensus 266 ~wy~pif~i~~~~~~n~~~~iAls~FPf 293 (310)
T PF10319_consen 266 SWYGPIFGIDLGRWNNYFSVIALSAFPF 293 (310)
T ss_pred HHhHHHHcCChhHHHHHHHHHHHHHccc
Confidence 333 23333334556677777776663
No 58
>PHA02844 putative transmembrane protein; Provisional
Probab=24.51 E-value=1.1e+02 Score=22.38 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=2.7
Q ss_pred ccHHHHH
Q 025975 50 GKVWYWV 56 (245)
Q Consensus 50 ~~~~~w~ 56 (245)
..++.|.
T Consensus 46 ~~~~~~i 52 (75)
T PHA02844 46 SSTKIWI 52 (75)
T ss_pred hhHHHHH
Confidence 3333344
No 59
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=24.22 E-value=2.1e+02 Score=18.67 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025975 136 FLLIMSAVAVGISLPYFIGSHF 157 (245)
Q Consensus 136 ~l~~~~g~~lGa~l~f~igR~~ 157 (245)
..-.++.+.+||++.-++.|.+
T Consensus 25 ~~~~~i~aviGAiill~i~~~i 46 (48)
T PF04226_consen 25 SWGSFIVAVIGAIILLFIYRLI 46 (48)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567777777776666654
No 60
>KOG4544 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.21 E-value=67 Score=26.17 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=29.6
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHhhhhccccCChHHHHHHHHHHHHHHHHH
Q 025975 85 VIPIINWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGF 136 (245)
Q Consensus 85 l~~l~~w~~~~~~~pv~~ill~~~~~~~p~~~lP~~~l~~~aG~lFG~~~G~ 136 (245)
-++..+|+.......++..+......=.+..++|..++++.+|+-+.+..|-
T Consensus 49 ~RE~f~w~~~f~~~avv~laa~~~~~Kr~~~liPIvPL~f~~gYqyd~ayGd 100 (144)
T KOG4544|consen 49 EREKFNWIACFGSLAVVLLAASSFHHKRLLHLIPIVPLAFFIGYQYDFAYGD 100 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchheechhhHhhhhheeecccch
Confidence 3456677633222222222222222233556789999999999987766654
No 61
>PRK14395 membrane protein; Provisional
Probab=23.93 E-value=1.5e+02 Score=25.48 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHhHHHHHHhhhhchHHHHHHH
Q 025975 138 LIMSAVAVGI-SLPYFIGSHFLHRIQGWLEKYPKKAAILR 176 (245)
Q Consensus 138 ~~~~g~~lGa-~l~f~igR~~g~~v~~~l~~~~~~~~l~~ 176 (245)
+..+|..+|| -.+|+++|..+.++++.-++|+-....-|
T Consensus 6 ~~i~~YLlGSIp~~~ii~k~~g~DiR~~GSgN~GaTNv~R 45 (195)
T PRK14395 6 IFIIAYLLGAIPFAYWAGRYKGMDVRKHGSGNIGTTNAFR 45 (195)
T ss_pred HHHHHHHHHhhhHHHHHHHHcCCCchhcCCCCchHHHHHH
Confidence 3556777777 46889999655568887766654444434
No 62
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=23.26 E-value=5.5e+02 Score=23.05 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHH-HHHhhh---hchHHH---HHHHHHhcCCCchhHHHhHHhhcc
Q 025975 126 AGMTFGYGFGFLLIMSAVAVGISLPYFIGSH--FLHR-IQGWLE---KYPKKA---AILRAAGEGNWFHQFRTVALIRIS 196 (245)
Q Consensus 126 aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~--~g~~-v~~~l~---~~~~~~---~l~~~~~~~~w~~g~~~v~l~Rl~ 196 (245)
.........|++.+.++..+|-..+|.+.|+ -||+ ++.... --|..- .+...+..-+-..+++.+++.-.+
T Consensus 65 ~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivlaH~~ 144 (267)
T COG1177 65 SALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLAHIV 144 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHhhhcccHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 3344455667888888999999999999997 2233 333221 012111 122222222223489999999999
Q ss_pred c-cchhhHHHhHhhcCCCchhHHHHHHHh
Q 025975 197 P-FPYIIYNYCAVATHVKYGPYFLGSLVG 224 (245)
Q Consensus 197 P-~P~~~vny~aG~t~v~~~~F~~~s~iG 224 (245)
- +|+.+....+.+.+++..-=-.+--+|
T Consensus 145 ~~lP~v~~~v~a~l~~~d~~LeeAA~dLG 173 (267)
T COG1177 145 FALPFVVVVVSARLQGFDRSLEEAARDLG 173 (267)
T ss_pred HHhhHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 8 799999999999999874333333344
No 63
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.10 E-value=2.7e+02 Score=21.84 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=2.7
Q ss_pred HHHHHH
Q 025975 54 YWVKLA 59 (245)
Q Consensus 54 ~w~kl~ 59 (245)
.|..++
T Consensus 40 pwK~I~ 45 (115)
T PF05915_consen 40 PWKSIA 45 (115)
T ss_pred HHHHHH
Confidence 454443
No 64
>PRK14402 membrane protein; Provisional
Probab=23.06 E-value=1.6e+02 Score=25.34 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhHHHHHHhhhhchHHHHHHHHHhcC--------CCchhHHHhHHhhccc
Q 025975 135 GFLLIMSAVAVGI-SLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEG--------NWFHQFRTVALIRISP 197 (245)
Q Consensus 135 G~l~~~~g~~lGa-~l~f~igR~~g~~v~~~l~~~~~~~~l~~~~~~~--------~w~~g~~~v~l~Rl~P 197 (245)
..++..+|..+|| -.+|+++|..+.++++.-++|+-....-|...+. +-.+|...+.+.+..+
T Consensus 5 ~~l~~~~~YllGsip~~~~v~k~~g~DiR~~GSgN~GatNv~R~~G~~~g~~v~l~D~lKG~l~v~l~~~~~ 76 (198)
T PRK14402 5 AVLALLLAYLFGSIPAGAWVARTRGVDIRKVGSGNSGATNVLRSLGKGPALVVAFFDVLKGGIAVLLARALG 76 (198)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCCChhhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455556677777 4688899975556888776665443333332210 0013667777777665
No 65
>PRK14399 membrane protein; Provisional
Probab=23.06 E-value=1.7e+02 Score=26.39 Aligned_cols=51 Identities=14% Similarity=-0.038 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhH-HHHHHhhhhchHHHHHHHHH
Q 025975 128 MTFGYGFGFLLIMSAVAVGIS-LPYFIGSHFL-HRIQGWLEKYPKKAAILRAA 178 (245)
Q Consensus 128 ~lFG~~~G~l~~~~g~~lGa~-l~f~igR~~g-~~v~~~l~~~~~~~~l~~~~ 178 (245)
+.++...-.+...+|..+||. .+|.++|.+. .++|+.-++++-....-|..
T Consensus 4 ~~~~~l~~il~~iigYLiGSIp~g~ii~k~~~g~DIR~~GSGN~GaTNv~Rvl 56 (258)
T PRK14399 4 FYMYYLGIILASVFGYFLGSISWSIIIVKKVGNIDIRTVGSGNPGATNTVRIL 56 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCCCccccCCCCCcHhHHHHHh
Confidence 333333344556667888884 4689999864 45777666655444333333
No 66
>COG4732 Predicted membrane protein [Function unknown]
Probab=22.93 E-value=1.7e+02 Score=24.45 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=10.3
Q ss_pred ccccCChHH-HHHHHHHHH
Q 025975 113 PTLLLPSSP-SMWVAGMTF 130 (245)
Q Consensus 113 p~~~lP~~~-l~~~aG~lF 130 (245)
+++.+|++. =.+++|+.+
T Consensus 74 tvfA~pGsi~GaLlA~~fy 92 (177)
T COG4732 74 TVFAFPGSIPGALLAGAFY 92 (177)
T ss_pred CeeecCCCchHHHHHHHHH
Confidence 445677644 355577653
No 67
>COG2261 Predicted membrane protein [Function unknown]
Probab=22.78 E-value=2.3e+02 Score=21.05 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhH
Q 025975 123 MWVAGMTFGYG-----FGFLLIMSAVAVGISLPYFIGSHFL 158 (245)
Q Consensus 123 ~~~aG~lFG~~-----~G~l~~~~g~~lGa~l~f~igR~~g 158 (245)
.++++.+++.+ .+...+.+.+++||++.-++.|.+.
T Consensus 40 A~vg~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v~ 80 (82)
T COG2261 40 AFVGGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLVR 80 (82)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666665 3456778888999998888887653
No 68
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=22.76 E-value=4e+02 Score=21.32 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 025975 122 SMWVAGMTFGY 132 (245)
Q Consensus 122 l~~~aG~lFG~ 132 (245)
-....|++||.
T Consensus 75 ~a~~~GallGl 85 (128)
T PF09945_consen 75 RALLYGALLGL 85 (128)
T ss_pred HHHHHHHHHHH
Confidence 45677888774
No 69
>PRK14404 membrane protein; Provisional
Probab=22.38 E-value=1.1e+02 Score=26.40 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=27.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhHHHHHHhhhhchHHHHHHHHH
Q 025975 137 LLIMSAVAVGI-SLPYFIGSHFLHRIQGWLEKYPKKAAILRAA 178 (245)
Q Consensus 137 l~~~~g~~lGa-~l~f~igR~~g~~v~~~l~~~~~~~~l~~~~ 178 (245)
++..+|..+|| ..+|+++|..+.++++.-++|+-....-|..
T Consensus 4 l~~i~~YL~GSip~g~~i~k~~g~DiR~~GSgN~GatNv~R~~ 46 (201)
T PRK14404 4 LIILLQFLSGSLMFSYWIGKIVGKDLRKVRDGNPGAFNLWRAA 46 (201)
T ss_pred HHHHHHHHHhccHHHHHHHHHhCCCccccCCCCccHHHHHHHh
Confidence 44556777777 4689999987767877766665544444433
No 70
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.27 E-value=1.4e+02 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 025975 142 AVAVGISLPYFIGSHFLH 159 (245)
Q Consensus 142 g~~lGa~l~f~igR~~g~ 159 (245)
|...|+++++++|..+.+
T Consensus 17 ~g~~Ga~~G~~~Gh~~d~ 34 (267)
T PRK09430 17 GGFFGALLGLLIGHMFDK 34 (267)
T ss_pred hhHHHHHHHHHHHhHHhh
Confidence 445555555555555443
No 71
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.17 E-value=3.3e+02 Score=20.37 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 120 SPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (245)
Q Consensus 120 ~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~ 150 (245)
+.+..+.|+..|.+.|.. ++|..+|..++
T Consensus 22 E~i~~~~~~~~Gi~~~~~--l~g~~lg~~~~ 50 (95)
T TIGR02762 22 EFLPGATLFGIGILSGKA--LIGLILGAAVM 50 (95)
T ss_pred HHHHHHHHHHHHHHHhhH--HHHHHHHHHHH
Confidence 334445555556555543 35566666555
No 72
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=22.01 E-value=5.9e+02 Score=22.93 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=4.1
Q ss_pred HHHHHhHHH
Q 025975 152 FIGSHFLHR 160 (245)
Q Consensus 152 ~igR~~g~~ 160 (245)
.+.|.++++
T Consensus 277 ~l~~~fg~r 285 (307)
T PF03773_consen 277 MLRRVFGKR 285 (307)
T ss_pred HHHHHHHHH
Confidence 444445443
No 73
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.78 E-value=3.6e+02 Score=21.59 Aligned_cols=28 Identities=25% Similarity=0.543 Sum_probs=17.3
Q ss_pred ccCChHHHHHHHH----HHHHHHHHHHHHHHH
Q 025975 115 LLLPSSPSMWVAG----MTFGYGFGFLLIMSA 142 (245)
Q Consensus 115 ~~lP~~~l~~~aG----~lFG~~~G~l~~~~g 142 (245)
+++|.+.+..+.= -.+++|.|.++....
T Consensus 13 lf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~ 44 (151)
T PF14163_consen 13 LFLPESLLEWLNLDKFEIKYQPWIGLIFLFSV 44 (151)
T ss_pred HHCCHHHHHHhCcchHHHhcchHHHHHHHHHH
Confidence 3578877665433 457788777655543
No 74
>COG2426 Predicted membrane protein [Function unknown]
Probab=21.64 E-value=4.4e+02 Score=21.38 Aligned_cols=107 Identities=16% Similarity=0.005 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--h--hhh----ch-HHHHHHHHHhcCCCchhHHHhHHhhccccch
Q 025975 130 FGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQG--W--LEK----YP-KKAAILRAAGEGNWFHQFRTVALIRISPFPY 200 (245)
Q Consensus 130 FG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v~~--~--l~~----~~-~~~~l~~~~~~~~w~~g~~~v~l~Rl~P~P~ 200 (245)
++++.....+.+|...=+.+-+.+-+..-+...| + +++ +. ..++-.|..+..-+++|+.-+.+.--+|.|-
T Consensus 18 ~~~~Eal~~silGvL~l~~lL~~~l~~id~im~kl~~~rl~r~~~lY~~~~~r~~rka~~yVER~G~iGL~iFvAIPLP~ 97 (142)
T COG2426 18 LSPLEALLLSILGVLPLSLLLPLLLDPIDRIMLKLKWTRLQRPACLYDWLVNRTRRKAKGYVERYGFIGLIIFVAIPLPG 97 (142)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHhccCcHhhhhhhhhhheeeccCCC
Confidence 3467777777777555444444444443332111 1 211 00 0111111111112235777777777778765
Q ss_pred hhH---HHhHhhcCCCchhHHHHHHHhHHHHHHHHHHHH
Q 025975 201 IIY---NYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTY 236 (245)
Q Consensus 201 ~~v---ny~aG~t~v~~~~F~~~s~iG~lP~~~~~~~~G 236 (245)
+=. +.+|-+.+++.+.=+.+-.+|......+.+..+
T Consensus 98 TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt~l~s 136 (142)
T COG2426 98 TGAWTGALAAYLLGIRERFAFAALSAGGLISGAVTTLPS 136 (142)
T ss_pred ccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHHHhhc
Confidence 433 566778899998888888788777666665544
No 75
>PRK14393 membrane protein; Provisional
Probab=21.23 E-value=1.5e+02 Score=25.47 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=34.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHhHHHHHHhhhhchHHHHHHHHHhcC--------CCchhHHHhHHhhccc
Q 025975 138 LIMSAVAVGI-SLPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEG--------NWFHQFRTVALIRISP 197 (245)
Q Consensus 138 ~~~~g~~lGa-~l~f~igR~~g~~v~~~l~~~~~~~~l~~~~~~~--------~w~~g~~~v~l~Rl~P 197 (245)
+..+|..+|| -.+|+++|..|.++++.-++|+-....-|...+. +-.+|+..+.+.+...
T Consensus 7 ~~i~~YLlGSip~~~ii~k~~g~DiR~~GSgN~GaTNv~R~~G~k~g~~vll~D~lKG~lav~la~~~~ 75 (194)
T PRK14393 7 LLVGAYLLGSIPTGLLLAKAVGVDIRNTGSGNIGATNVYRTLGRKVGILTLIGDCLKGLVPVLIARKLG 75 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCchhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4455667777 4588899977667887766665444333332210 0013666777766553
No 76
>PRK14407 membrane protein; Provisional
Probab=21.22 E-value=1.4e+02 Score=26.11 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHh-HHHHHHhhhhchHHHHHHHHH
Q 025975 134 FGFLLIMSAVAVGI-SLPYFIGSHF-LHRIQGWLEKYPKKAAILRAA 178 (245)
Q Consensus 134 ~G~l~~~~g~~lGa-~l~f~igR~~-g~~v~~~l~~~~~~~~l~~~~ 178 (245)
.|.+...+|..+|| -.+|+++|.+ +.++|+.-++|+-....-|..
T Consensus 6 ~~~~~l~i~YLlGSIp~g~iv~k~~~g~DiR~~GSGN~GaTNv~R~l 52 (219)
T PRK14407 6 AGAVGLAIAYLLGSTPTGYLAGKLLKGIDIREHGSKSTGATNVLRTL 52 (219)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhCCCCCCcCCCCCccHHHHHHHH
Confidence 35666667888888 5689999986 445877766655444333433
No 77
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=21.20 E-value=4e+02 Score=20.66 Aligned_cols=103 Identities=15% Similarity=0.259 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc--hHHHHHHHHHhcCCCchhHHHhHHh-hccc-c
Q 025975 123 MWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY--PKKAAILRAAGEGNWFHQFRTVALI-RISP-F 198 (245)
Q Consensus 123 ~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v~~~l~~~--~~~~~l~~~~~~~~w~~g~~~v~l~-Rl~P-~ 198 (245)
.++.+...|...|+.-.. .+.+|-.+++.++.++.+.+.++++++ ...+...+.+. +..+++. .++= .
T Consensus 8 i~l~~~~~G~~rG~~~~~-~~l~~~i~a~~~a~~~~~~~~~~l~~~~~~~~~~~~~~ia-------f~~~f~~~~~i~~~ 79 (146)
T PF02674_consen 8 ILLIFAIKGYRRGFIREL-FSLIGLIVALFVAFLFYPPLAPFLSNYFSSLSPPFANIIA-------FIILFVLVYIIVRI 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 445666778777765444 344466667777776666655555542 11122222221 1111111 1111 1
Q ss_pred chhhHHHhHhhcCCCchhHHHHHHHhHHHHHHHHH
Q 025975 199 PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTI 233 (245)
Q Consensus 199 P~~~vny~aG~t~v~~~~F~~~s~iG~lP~~~~~~ 233 (245)
......-..-..+.+..+-+.+..+|.+=..++..
T Consensus 80 i~~~l~~~~~~~~~~~~dr~lG~~~G~~~~~li~~ 114 (146)
T PF02674_consen 80 IGKLLRRIVKKPFLGWLDRLLGALLGLAKGLLILS 114 (146)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 22222222344666777777888888665555444
No 78
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=20.76 E-value=5.3e+02 Score=21.97 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=30.2
Q ss_pred hccccCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 025975 112 FPTLLLPSSPSM-WVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168 (245)
Q Consensus 112 ~p~~~lP~~~l~-~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g~~v~~~l~~~ 168 (245)
+|.+.-|+++.+ +..+.-.+.+.+.+...++..+-+.+.|+.-++ .++++|+++++
T Consensus 118 ~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~-a~~i~~~lG~~ 174 (203)
T PF01914_consen 118 IPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRF-ADKIMRRLGKT 174 (203)
T ss_pred hhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHhhhH
Confidence 344455776532 223333444555566666666666666665554 44466666654
No 79
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=20.36 E-value=2.8e+02 Score=20.07 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=8.8
Q ss_pred hhHHHHHHHhhccchhH
Q 025975 83 KEVIPIINWETTTFSTP 99 (245)
Q Consensus 83 ~~l~~l~~w~~~~~~~p 99 (245)
+.++.+.+|...-+|++
T Consensus 42 ~~~E~l~e~Y~~~~w~~ 58 (72)
T PF13198_consen 42 KIIEPLFELYKDWFWNP 58 (72)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566666654444444
No 80
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=20.34 E-value=1.3e+02 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 025975 134 FGFLLIMSAVAVGISLPYFIGSHFLHR 160 (245)
Q Consensus 134 ~G~l~~~~g~~lGa~l~f~igR~~g~~ 160 (245)
+-.+...+++.+++.++-++||++.|+
T Consensus 156 ~~~~~~~~~~~v~a~lG~~lG~kllkK 182 (186)
T PF09605_consen 156 WMLIIIIIITFVGALLGALLGKKLLKK 182 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778888888888888887654
No 81
>PRK12488 acetate permease; Provisional
Probab=20.33 E-value=8.3e+02 Score=24.01 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHhh
Q 025975 217 YFLGSLVGMVPEIFVTIYTYVF 238 (245)
Q Consensus 217 F~~~s~iG~lP~~~~~~~~G~~ 238 (245)
|..+.+++.+ -+.+|++.|-.
T Consensus 180 ~~~~iii~~~-i~~~Yt~~GGm 200 (549)
T PRK12488 180 YLYAVVIVGA-LMVLYVTFGGM 200 (549)
T ss_pred HHHHHHHHHH-HHHHHHhccch
Confidence 4455544433 46677777643
No 82
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=20.17 E-value=1.3e+02 Score=31.01 Aligned_cols=17 Identities=6% Similarity=-0.036 Sum_probs=8.8
Q ss_pred ccHHHHHHHHHHHHHHH
Q 025975 50 GKVWYWVKLAFFLTSVG 66 (245)
Q Consensus 50 ~~~~~w~kl~~l~~~l~ 66 (245)
..+|.|.--.+.+++++
T Consensus 71 ~TfRmW~Lg~~~~iv~a 87 (761)
T KOG2262|consen 71 LTFRMWFLGLISCIVLA 87 (761)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 45666665554444433
No 83
>PRK14400 membrane protein; Provisional
Probab=20.09 E-value=2e+02 Score=24.85 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhH-HHHHHhhhhchHHHHHHHHHhcCC--------CchhHHHhHHhhcc
Q 025975 135 GFLLIMSAVAVGI-SLPYFIGSHFL-HRIQGWLEKYPKKAAILRAAGEGN--------WFHQFRTVALIRIS 196 (245)
Q Consensus 135 G~l~~~~g~~lGa-~l~f~igR~~g-~~v~~~l~~~~~~~~l~~~~~~~~--------w~~g~~~v~l~Rl~ 196 (245)
+.++..+|..+|| -.+|+++|.+. .++++.-++|+-....-|...+.- -.+|+..+.+.+..
T Consensus 7 ~~~~~i~~YllGsip~~~~i~k~~~g~DiR~~GSgN~GaTNv~R~~G~~~g~~v~l~D~lKG~l~v~la~~~ 78 (201)
T PRK14400 7 GAVLVAAGYLAGSIPFGVVLGRLVLGVDVRTVGSGNIGATNVARAGGKKLGVLVLLLDAAKAIVPILVARRL 78 (201)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCCCccccCCCCchHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777 56899999864 458777666654443333322110 01366666666554
No 84
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=20.06 E-value=1e+03 Score=25.07 Aligned_cols=21 Identities=5% Similarity=0.081 Sum_probs=13.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhh
Q 025975 219 LGSLVGMVPEIFVTIYTYVFG 239 (245)
Q Consensus 219 ~~s~iG~lP~~~~~~~~G~~l 239 (245)
+...+..+-..++++++|..+
T Consensus 292 f~e~ie~LLn~~lFVlLGa~L 312 (810)
T TIGR00844 292 VSNVIDVLLNYAYFVYLGSIL 312 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444556666777778888765
Done!