Query 025975
Match_columns 245
No_of_seqs 228 out of 1596
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 21:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 27.8 35 0.0012 27.5 2.7 30 120-149 48-77 (189)
2 4ezc_A UREA transporter 1; mem 27.3 1.7E+02 0.0057 26.6 7.4 68 84-158 36-106 (384)
3 2hfr_A Fowlicidin-3, cathelici 17.9 53 0.0018 18.0 1.2 17 194-210 2-19 (27)
4 1ots_A Voltage-gated CLC-type 17.9 5.5E+02 0.019 23.3 11.2 17 143-159 425-441 (465)
5 2lbg_A Major prion protein; co 14.8 1.6E+02 0.0055 16.4 2.7 18 140-157 8-25 (27)
6 3k3f_A UREA transporter; membr 14.7 4.6E+02 0.016 23.1 7.4 36 119-158 35-70 (340)
7 4dve_A Biotin transporter BIOY 14.5 4.7E+02 0.016 21.2 6.9 18 120-137 52-69 (198)
8 3hn9_A Lamin-B1; structural ge 13.0 62 0.0021 24.5 0.9 19 18-38 16-34 (123)
9 3tui_A D-methionine transport 10.9 5.4E+02 0.018 19.5 7.5 30 198-227 101-130 (217)
10 1rh5_C Secbeta; protein transl 9.6 79 0.0027 20.5 0.4 9 1-9 16-24 (53)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=27.81 E-value=35 Score=27.53 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025975 120 SPSMWVAGMTFGYGFGFLLIMSAVAVGISL 149 (245)
Q Consensus 120 ~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l 149 (245)
.....++|++||++.|.+...++..++..+
T Consensus 48 ~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 48 DVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345566777777777766666665555543
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=27.28 E-value=1.7e+02 Score=26.59 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=33.7
Q ss_pred hHHHHHHHhhccchh-HHHHHHHHHHhhhhccccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 025975 84 EVIPIINWETTTFST-PVLAVLVFASVALFPTLLLPS--SPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL 158 (245)
Q Consensus 84 ~l~~l~~w~~~~~~~-pv~~ill~~~~~~~p~~~lP~--~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g 158 (245)
+++++.+|.++.+.. ..+-.++-. +-.+++.+. +-+.+++|..++-++-.+.+.+|+.+ +...++.+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~LrG---~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~v----stltA~llg 106 (384)
T 4ezc_A 36 DMKEFANWLKDKPQALQFVDWVLRG---ISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVV----STLTALLLS 106 (384)
T ss_dssp TCHHHHHHHHTSCHHHHHHHHHHHH---HHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHTT
T ss_pred chHHHHHHHhcCCcHHHHHHHHhcC---ceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHhC
Confidence 355667786444321 122222222 122334443 44677777777665554555555555 445555555
No 3
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=17.92 E-value=53 Score=18.03 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=12.9
Q ss_pred hccc-cchhhHHHhHhhc
Q 025975 194 RISP-FPYIIYNYCAVAT 210 (245)
Q Consensus 194 Rl~P-~P~~~vny~aG~t 210 (245)
|+.| +|-.+...++|+.
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 7788 6888777777764
No 4
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=17.90 E-value=5.5e+02 Score=23.27 Aligned_cols=17 Identities=0% Similarity=-0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhHH
Q 025975 143 VAVGISLPYFIGSHFLH 159 (245)
Q Consensus 143 ~~lGa~l~f~igR~~g~ 159 (245)
.++.+.++|++++.+++
T Consensus 425 l~ia~~iA~~v~~~~~~ 441 (465)
T 1ots_A 425 MIITGLGATLLAQFTGG 441 (465)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 45667788888887764
No 5
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=14.78 E-value=1.6e+02 Score=16.37 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025975 140 MSAVAVGISLPYFIGSHF 157 (245)
Q Consensus 140 ~~g~~lGa~l~f~igR~~ 157 (245)
..|.++|+.-+|++|+-+
T Consensus 8 AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 8 AAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHh
Confidence 346666666677776644
No 6
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=14.69 E-value=4.6e+02 Score=23.13 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 025975 119 SSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL 158 (245)
Q Consensus 119 ~~~l~~~aG~lFG~~~G~l~~~~g~~lGa~l~f~igR~~g 158 (245)
-+-+.+++|...+.++..+.+.+|+.+ +...++.+|
T Consensus 35 lsGllil~gi~~~s~~~a~~allG~~~----stltA~llg 70 (340)
T 3k3f_A 35 VTGLLFFAGIFYNSTTLGVCAVLGTAA----STLTAQLLG 70 (340)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhC
Confidence 344677777777755544445555444 444455444
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=14.49 E-value=4.7e+02 Score=21.19 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025975 120 SPSMWVAGMTFGYGFGFL 137 (245)
Q Consensus 120 ~~l~~~aG~lFG~~~G~l 137 (245)
+...+++|.++|+..|++
T Consensus 52 tl~V~LaG~~LG~r~G~l 69 (198)
T 4dve_A 52 NMGIMMAGGLLGPKYGTI 69 (198)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHChhHHHH
Confidence 446777888888877754
No 8
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=12.97 E-value=62 Score=24.47 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=12.7
Q ss_pred ecccCCCCCCCCeeeeccCCC
Q 025975 18 DIDENNNNNKGDYLKLREYEE 38 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (245)
.++++| -+++||+|.-.++
T Consensus 16 ~I~evd--~~G~fV~L~N~s~ 34 (123)
T 3hn9_A 16 CIEEID--VDGKFIRLKNTSE 34 (123)
T ss_dssp EEEEEC--TTSSEEEEEECSS
T ss_pred EEEEEc--CCCCEEEEEECCC
Confidence 344444 5689999976654
No 9
>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*
Probab=10.86 E-value=5.4e+02 Score=19.49 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=18.7
Q ss_pred cchhhHHHhHhhcCCCchhHHHHHHHhHHH
Q 025975 198 FPYIIYNYCAVATHVKYGPYFLGSLVGMVP 227 (245)
Q Consensus 198 ~P~~~vny~aG~t~v~~~~F~~~s~iG~lP 227 (245)
.|+....+.+++.+++-..+=.+-..|.-+
T Consensus 101 ~~~~~~~~~~~l~~i~~~~~eaA~~~Gas~ 130 (217)
T 3tui_A 101 APFIARMVENALLEIPTGLIEASRAMGATP 130 (217)
T ss_dssp HHHHHHHHHHHHTTSCTHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCCCH
Confidence 466666666777777666555555555433
No 10
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=9.62 E-value=79 Score=20.50 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=0.0
Q ss_pred CccccCCCc
Q 025975 1 MTYYEDDEV 9 (245)
Q Consensus 1 ~~~~~~~~~ 9 (245)
|.|||||+.
T Consensus 16 vryy~ee~~ 24 (53)
T 1rh5_C 16 IRYMDETFS 24 (53)
T ss_dssp -----CCCC
T ss_pred hhhhhccCC
Done!