Query 025975
Match_columns 245
No_of_seqs 228 out of 1596
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 21:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025975.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025975hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 27.4 44 0.0032 17.9 4.2 24 132-155 4-28 (34)
2 d2vv5a3 f.34.1.1 (A:27-112) Me 15.9 1.3E+02 0.0093 18.8 6.1 19 205-223 58-76 (86)
3 d1q90g_ f.23.26.1 (G:) PetG su 7.3 1.8E+02 0.013 15.1 3.9 24 216-239 4-27 (30)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 6.6 5.8E+02 0.043 20.5 9.6 17 143-159 409-425 (444)
5 d1pqsa_ d.15.2.2 (A:) Cell div 6.5 1.4E+02 0.01 19.2 2.3 19 14-38 38-56 (77)
6 d1q90l_ f.23.24.1 (L:) PetL su 5.6 2.3E+02 0.017 14.6 3.7 20 138-158 5-24 (32)
7 d2fug31 b.52.2.2 (3:686-767) N 3.9 2E+02 0.015 18.1 1.8 27 10-36 26-54 (82)
8 d1dwka2 d.72.1.1 (A:87-156) Cy 3.7 1.5E+02 0.011 18.7 0.8 27 7-33 32-58 (70)
9 d1a87a_ f.1.1.1 (A:) Colicin N 3.6 8.9E+02 0.065 18.8 7.1 8 93-100 220-227 (297)
10 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.6 9.1E+02 0.066 18.9 7.3 89 139-244 5-97 (405)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=27.40 E-value=44 Score=17.90 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=13.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Q 025975 132 YGFGFLLIMSA-VAVGISLPYFIGS 155 (245)
Q Consensus 132 ~~~G~l~~~~g-~~lGa~l~f~igR 155 (245)
+..|..+.++| +.+|-.++|.+-|
T Consensus 4 fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHhhee
Confidence 34455556666 3455566666655
No 2
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=15.90 E-value=1.3e+02 Score=18.83 Aligned_cols=19 Identities=5% Similarity=-0.265 Sum_probs=11.6
Q ss_pred HhHhhcCCCchhHHHHHHH
Q 025975 205 YCAVATHVKYGPYFLGSLV 223 (245)
Q Consensus 205 y~aG~t~v~~~~F~~~s~i 223 (245)
.+....+++...++.+.-+
T Consensus 58 ~~L~~~Gi~~t~l~a~~G~ 76 (86)
T d2vv5a3 58 AALGRVGVQTASVIAVLGA 76 (86)
T ss_dssp HHHHTTTCCSTTHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3455677777776665543
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.31 E-value=1.8e+02 Score=15.06 Aligned_cols=24 Identities=21% Similarity=0.573 Sum_probs=15.7
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhhh
Q 025975 216 PYFLGSLVGMVPEIFVTIYTYVFG 239 (245)
Q Consensus 216 ~F~~~s~iG~lP~~~~~~~~G~~l 239 (245)
+.+.+..+|.+|.++.=.++-..+
T Consensus 4 ~ll~GivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 4 PLLCGIVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHHHHHHHHHHHH
Confidence 356677888888877655544443
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=6.63 E-value=5.8e+02 Score=20.47 Aligned_cols=17 Identities=0% Similarity=-0.240 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhHH
Q 025975 143 VAVGISLPYFIGSHFLH 159 (245)
Q Consensus 143 ~~lGa~l~f~igR~~g~ 159 (245)
.++.+.++|+++|.+++
T Consensus 409 ~~ia~~~a~~v~~~~~~ 425 (444)
T d1otsa_ 409 MIITGLGATLLAQFTGG 425 (444)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 45566777777777664
No 5
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.50 E-value=1.4e+02 Score=19.20 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=12.9
Q ss_pred eeeeecccCCCCCCCCeeeeccCCC
Q 025975 14 TLRIDIDENNNNNKGDYLKLREYEE 38 (245)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (245)
++|-.++| ||||.++++++
T Consensus 38 rlrY~DeD------GD~V~i~sddd 56 (77)
T d1pqsa_ 38 KIKYQDED------GDFVVLGSDED 56 (77)
T ss_dssp CCEEEETT------TEEEECCSTTH
T ss_pred eEEEEcCC------CCEEEEeccch
Confidence 55655444 89999976654
No 6
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.56 E-value=2.3e+02 Score=14.59 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 025975 138 LIMSAVAVGISLPYFIGSHFL 158 (245)
Q Consensus 138 ~~~~g~~lGa~l~f~igR~~g 158 (245)
.+.+|..+|+. .|-+|-|+|
T Consensus 5 ~syvglligal-~~tlgiylg 24 (32)
T d1q90l_ 5 TSYVGLLIGAL-VFTLGIYLG 24 (32)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHH
Confidence 44555555543 455555554
No 7
>d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3, Nqo3, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=3.91 E-value=2e+02 Score=18.07 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=17.3
Q ss_pred cccceeeeecccCC--CCCCCCeeeeccC
Q 025975 10 VPELTLRIDIDENN--NNNKGDYLKLREY 36 (245)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 36 (245)
.+|-.+.|..+|-+ +.++||.|++...
T Consensus 26 ~~ep~v~i~P~dA~~lGi~~Gd~V~V~s~ 54 (82)
T d2fug31 26 AARAELWAHPETARAEALPEGAQVAVETP 54 (82)
T ss_dssp HHCC--CCCSSSCSTTTCCTTCEEEEEET
T ss_pred CCCCEEEECHHHHHHcCCCcCCEEEEEcC
Confidence 35556666666655 5678999998654
No 8
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.72 E-value=1.5e+02 Score=18.67 Aligned_cols=27 Identities=11% Similarity=0.455 Sum_probs=18.3
Q ss_pred CCccccceeeeecccCCCCCCCCeeee
Q 025975 7 DEVVPELTLRIDIDENNNNNKGDYLKL 33 (245)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (245)
|+..+-....++.|.++|.+++|-|.+
T Consensus 32 DGIMSAIdF~~~v~k~~d~~ggdRvvi 58 (70)
T d1dwka2 32 DGIISAINFKLDVKKVADPEGGERAVI 58 (70)
T ss_dssp SEEEEEEEEEEEEEEEECTTSSEEEEE
T ss_pred ccEEEeEeeeeeEEeecCCCCCCEEEE
Confidence 666666666666666665677887765
No 9
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=3.62 E-value=8.9e+02 Score=18.85 Aligned_cols=8 Identities=25% Similarity=0.160 Sum_probs=5.7
Q ss_pred hccchhHH
Q 025975 93 TTTFSTPV 100 (245)
Q Consensus 93 ~~~~~~pv 100 (245)
+.|-|.|+
T Consensus 220 eTGNWrPL 227 (297)
T d1a87a_ 220 NTGNWGPL 227 (297)
T ss_dssp TTCCCHHH
T ss_pred cCCCcHHH
Confidence 66778874
No 10
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.57 E-value=9.1e+02 Score=18.87 Aligned_cols=89 Identities=10% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH-HHHhhhhchHHHHHHHHHhcCCCchhHHHhHHhhccccchhhHHHhHhhcCC---Cc
Q 025975 139 IMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHV---KY 214 (245)
Q Consensus 139 ~~~g~~lGa~l~f~igR~~g~~-v~~~l~~~~~~~~l~~~~~~~~w~~g~~~v~l~Rl~P~P~~~vny~aG~t~v---~~ 214 (245)
..+|..+|..++..++.....+ ...+++-- |-..+-++|++-.|.-+.+...|+.++ +.
T Consensus 5 ili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~-----------------g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~ 67 (405)
T d2nwwa1 5 ILIGLILGAIVGLILGHYGYAHAVHTYVKPF-----------------GDLFVRLLKMLVMPIVFASLVVGAASISPARL 67 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHTTTTHHH-----------------HHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTH
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHhccchhc
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhhhhhhc
Q 025975 215 GPYFLGSLVGMVPEIFVTIYTYVFGLPILF 244 (245)
Q Consensus 215 ~~F~~~s~iG~lP~~~~~~~~G~~l~~l~~ 244 (245)
.+-..-++.-.+-.+.+-+.+|-.+..++.
T Consensus 68 gkl~~~ti~~~l~tt~iA~~igl~~~~~~~ 97 (405)
T d2nwwa1 68 GRVGVKIVVYYLLTSAFAVTLGIIMARLFN 97 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Done!