BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025976
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1
Length = 256
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 87/131 (66%), Gaps = 13/131 (9%)
Query: 14 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 71
RP+ Y+ R + P WQHDLF+ A +G+E G KL VSNL GV++ DI+E
Sbjct: 73 RPTPYS------RPKQLPDKWQHDLFDSGFGAG--AGMETGGKLLVSNLDFGVSDADIQE 124
Query: 72 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V +
Sbjct: 125 LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQ 184
Query: 132 AEI---PLQAR 139
E P+Q++
Sbjct: 185 IEAQRRPIQSQ 195
>sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1
Length = 260
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 86/131 (65%), Gaps = 13/131 (9%)
Query: 14 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 71
RP+ Y+ R + P WQHDLF+ +G+E G KL VSNL GV++ DI+E
Sbjct: 76 RPAPYS------RPKQLPDKWQHDLFDSGFGTG--AGMETGGKLLVSNLDFGVSDADIQE 127
Query: 72 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V +
Sbjct: 128 LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQ 187
Query: 132 AEI---PLQAR 139
E P+Q++
Sbjct: 188 IEAQRRPIQSQ 198
>sp|Q6GLW1|THO4B_XENLA THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1
Length = 256
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 87/131 (66%), Gaps = 13/131 (9%)
Query: 14 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 71
RP+ Y+ R + P WQHDLF DS G +G+E G KL VSNL GV++ DI+E
Sbjct: 72 RPTPYS------RPKQLPDKWQHDLF-DSGFGTG-AGMETGGKLLVSNLDFGVSDADIQE 123
Query: 72 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+ M I++V +
Sbjct: 124 LFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQ 183
Query: 132 AEI---PLQAR 139
E P+Q++
Sbjct: 184 IEAQRRPIQSQ 194
>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2
PE=1 SV=1
Length = 218
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 79/122 (64%), Gaps = 10/122 (8%)
Query: 14 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 71
RP+ Y+ R + P WQHDLF+ G G+E G KL VSNL GV++ DI+E
Sbjct: 42 RPAPYS------RPKPLPDKWQHDLFDSG--CGGGEGVETGAKLLVSNLDFGVSDADIQE 93
Query: 72 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131
LF+E G LK+ A+ +D++GR G+A+V + RR+DA A+K+Y V LDG+PM I++V +
Sbjct: 94 LFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 153
Query: 132 AE 133
+
Sbjct: 154 ID 155
>sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1
Length = 254
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 87/137 (63%), Gaps = 20/137 (14%)
Query: 9 PLSN----------ARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLY 56
P+ N RP+ Y+ R + P WQHDLF DS AG +G+E G KL
Sbjct: 55 PVRNRPVMARGGGRNRPAPYS------RPKQLPEKWQHDLF-DSGFGAG-AGVETGGKLL 106
Query: 57 VSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 116
VSNL GV++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V
Sbjct: 107 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV 166
Query: 117 LLDGKPMKIEVVGTNAE 133
LDG+PM I++V + +
Sbjct: 167 PLDGRPMNIQLVTSQID 183
>sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3
Length = 255
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 10/122 (8%)
Query: 14 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 71
RP+ Y+ R + P WQHDLF+ G KL VSNL GV++ DI+E
Sbjct: 72 RPAPYS------RPKQLPDKWQHDLFDSGFGGGAGVE--TGGKLLVSNLDFGVSDADIQE 123
Query: 72 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V +
Sbjct: 124 LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQ 183
Query: 132 AE 133
+
Sbjct: 184 ID 185
>sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3
Length = 257
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
Query: 24 FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 81
+ R + P WQHDLF+ G KL VSNL GV++ DI+ELF+E G LK+
Sbjct: 77 YSRPKQLPDKWQHDLFDSGFGGGAGVE--TGGKLLVSNLDFGVSDADIQELFAEFGTLKK 134
Query: 82 YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 133
A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V + +
Sbjct: 135 AAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQID 186
>sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1
Length = 257
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
Query: 24 FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 81
+ R + P WQHDLF+ G KL VSNL GV++ DI+ELF+E G LK+
Sbjct: 77 YSRPKQLPDKWQHDLFDSGFGGGAGVE--TGGKLLVSNLDFGVSDADIQELFAEFGTLKK 134
Query: 82 YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 133
A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V + +
Sbjct: 135 AAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQID 186
>sp|Q9BY77|PDIP3_HUMAN Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3
PE=1 SV=2
Length = 421
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 9/83 (10%)
Query: 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRS 104
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKD 325
Query: 105 DAFAALKRYNNVLLDGKPMKIEV 127
DA A K+YNN LDG+PMK +
Sbjct: 326 DAITAYKKYNNRCLDGQPMKCNL 348
>sp|Q8BG81|PDIP3_MOUSE Polymerase delta-interacting protein 3 OS=Mus musculus GN=Poldip3
PE=2 SV=1
Length = 420
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 9/83 (10%)
Query: 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRS 104
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKD 325
Query: 105 DAFAALKRYNNVLLDGKPMKIEV 127
DA A K+YNN LDG+PMK +
Sbjct: 326 DAITAYKKYNNRCLDGQPMKCNL 348
>sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mlo3 PE=1 SV=1
Length = 199
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHFDKNGRPSGSAEVVYARRSD 105
S I +K+ VSNL VT ++ELF + IG KR ++ + NGR G A ++++R D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 106 AFAALKRYNNVLLDG-KPMKIEVV 128
A A ++Y L+DG + MK+E++
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEII 132
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 26 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 85
R R F + F+++LRA+ T +Y+ N+ T + + ELFS GE+K+ +
Sbjct: 15 RDRRFSGTQEEFDEALRAS--------TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMG 66
Query: 86 FDKNGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127
DKN + P G V++ R D A+K + +LD +P++++
Sbjct: 67 LDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDF 109
>sp|Q84L14|NCBP2_ORYSJ Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp.
japonica GN=CBP20 PE=2 SV=1
Length = 243
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSD 105
+ ++ +YV N+ T + ELFS GE+++ + DKN + P G ++Y R D
Sbjct: 28 AALQASVTVYVGNMSFYTTEEQAYELFSRAGEIRKIIMGLDKNSKTPCGFCFILYYSRED 87
Query: 106 AFAALKRYNNVLLDGKPMKIEV 127
A A+K + +LD +P++++
Sbjct: 88 AEDAVKYISGTMLDDRPIRVDF 109
>sp|B5G279|NCBP2_TAEGU Nuclear cap-binding protein subunit 2 OS=Taeniopygia guttata
GN=NCBP2 PE=2 SV=1
Length = 168
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAF 107
+++ + LYV NL T + I+ELFS+ G++KR + DK + P G V Y R+DA
Sbjct: 39 LKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAE 98
Query: 108 AALKRYNNVLLDGKPMKIE 126
A++ N LD + ++ +
Sbjct: 99 HAMRFINGTRLDDRIIRTD 117
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 112
+ LYV NL P ++++ ++E+FS G + + D NG GS V +A +A A+ +
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 113 YNNVLLDGKPMKIEV 127
+ +++ KP+ + +
Sbjct: 378 LSGKMIESKPLYVAI 392
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 112
T +YV NL T+DD++ F E G++ + D G+ G V + DA A++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 113 YNNVLLDGK 121
N D K
Sbjct: 275 LNGHKFDDK 283
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
+YV N++ VT +++R+ FS+ G + + D+ G+ G V ++ +A A+K ++
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 115 NVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRKRTVVMTSGSGNAGGAAAI---NRG 171
+ GKP+ + + + +Q +V RK + +S S N G A + N
Sbjct: 366 GQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSS---SSASVNPGTYAPLYYTNTH 422
Query: 172 PG 173
PG
Sbjct: 423 PG 424
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAA 109
V LYV +LHP VT + + F+E L + D +GR + R DA A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 110 LKRYNNVLLDGKPMKI 125
+++ NN LL+GK +++
Sbjct: 82 IEKKNNSLLNGKMIRV 97
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 106
E T LY+ NL V+ D +RE F+E G++ AI D+N G A V + DA
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
+++ NLHP + N + E FS GE+ + D+NG G V + SDA A++ N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 115 NVLLDG 120
+L++G
Sbjct: 200 GMLMNG 205
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 112
T +YV N+ T+++ +LFS+ GE+ A+ D G+P G V + + A A++
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEE 290
Query: 113 YN 114
N
Sbjct: 291 LN 292
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 111
T LYV+NL +T+D++ ++F + G + + I DK GRP G A V + +R +A A+
Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247
Query: 112 RYNNVLLDG--KPMKIEVVGTNAEIPLQARVNVTGV 145
NNV+ +G +P+ + + + ++ +N G+
Sbjct: 248 ALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGM 283
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 110
GT L V+ L +T+ ++ LF G + I D K G G A V +A DA A+
Sbjct: 101 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 160
Query: 111 KRYNNVLLDGKPMKI 125
K N + + K +K+
Sbjct: 161 KTVNGITVRNKRLKV 175
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1
Length = 591
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 110
+G+ ++V+NL V ++E+FS G +KR I DK+G+ G V + + +A A+
Sbjct: 222 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI 281
Query: 111 KRYNNVLLDGKPMKIEV 127
+N L +PM +++
Sbjct: 282 SMFNGQFLFDRPMHVKM 298
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 111
T LYV+NL +T+D++ ++F + G + + I DK G+P G A V + +R +A A+
Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 230
Query: 112 RYNNVLLDG--KPMKIEVVGTNAEIPLQARVNVTGV 145
NNV+ +G +P+ + + + ++ +N G+
Sbjct: 231 ALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGM 266
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 110
GT L V+ L +T+ ++ LF G + I D K G G A V +A DA A+
Sbjct: 84 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 143
Query: 111 KRYNNVLLDGKPMKI 125
K N V + K +K+
Sbjct: 144 KSLNGVTVRNKRLKV 158
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3
Length = 600
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 110
+G+ ++V+NL V ++E+FS G +KR I DK+G+ G V + + +A A+
Sbjct: 231 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI 290
Query: 111 KRYNNVLLDGKPMKIEV 127
+N L +PM +++
Sbjct: 291 SMFNGQFLFDRPMHVKM 307
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 111
T LYV+NL +T+D + +F + G + + I DK GRP G A V Y +R +A A+
Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 272
Query: 112 RYNNVLLDG--KPMKIEV 127
NNV+ +G +P+ + +
Sbjct: 273 ALNNVIPEGGSQPLSVRL 290
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALK 111
T LYV+NL +T++ + +F + G++ + I DK+ G P G A + + +R +A A+
Sbjct: 164 TNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223
Query: 112 RYNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRKRTVVMTSGS---GNAGGAAAI 168
NNV+ +G GT PL R V +G+ K V M GN G
Sbjct: 224 ALNNVIPEG--------GTQ---PLTVR--VAEEHGKSKGHVYMAPNQPPHGNMGHGNMG 270
Query: 169 NRGPGSQGRRGG----LRRSSQGRGRGQGQGRGRGR 200
N G G+ G GG L + G Q RGR +
Sbjct: 271 NMGHGNMGMAGGSGMNLNNMNAFNGMNQMVHRGRQK 306
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 111
T LYV+NL +T+D + +F + G + + I DK GRP G A V Y +R +A A+
Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270
Query: 112 RYNNVLLDG--KPMKIEV 127
NNV+ +G +P+ + +
Sbjct: 271 ALNNVIPEGGSQPLSVRL 288
>sp|P52272|HNRPM_HUMAN Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM
PE=1 SV=3
Length = 730
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 110
+G+ ++V+NL V ++E+FS G + R I DK+G+ G V + + +A A+
Sbjct: 202 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 261
Query: 111 KRYNNVLLDGKPMKIEV 127
+N LL +PM +++
Sbjct: 262 SMFNGQLLFDRPMHVKM 278
>sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila melanogaster GN=Rsf1 PE=1
SV=1
Length = 197
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAF 107
G + GT++YV NL V DD+ F++ G+L I F+ P G A V + R DA
Sbjct: 2 GDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN----PPGFAFVEFEHRDDAE 57
Query: 108 AALKRYNNVLLDGKPMKIEV 127
A N L G +++E+
Sbjct: 58 KACDILNGSELLGSQLRVEI 77
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 111
T LYV+NL +T+D + +F + G + + I DK G+P G A V + +R +A A+
Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 255
Query: 112 RYNNVLLDGKPMKIEV 127
NNV+ +G + V
Sbjct: 256 ALNNVIPEGASQPLTV 271
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 110
GT L V+ L +T+ ++ LF IG + I D K G G A V +A +D+ A+
Sbjct: 109 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAI 168
Query: 111 KRYNNVLLDGKPMKI 125
K N + + K +K+
Sbjct: 169 KSLNGITVRNKRLKV 183
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKR 112
K+++ L+ ++E+F G + R + D+ + S G A + + R +DA A+K
Sbjct: 9 KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKE 68
Query: 113 YNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRKRTVVMTSGSGNA-------GGA 165
N V+LDGK +K++ QAR + +G +KR + G + GG
Sbjct: 69 MNGVILDGKRIKVK----------QARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGR 118
Query: 166 AAINRGPGSQGRRGGLR 182
+ GP +G GG R
Sbjct: 119 SRARSGPSCEGNLGGDR 135
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKR 112
K+++ L+ ++E+F G + R + D+ + S G A + + R +DA A+K
Sbjct: 9 KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKE 68
Query: 113 YNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRKRTVVMTSGSGNA-------GGA 165
N V+LDGK +K++ QAR + +G +KR + G + GG
Sbjct: 69 MNGVILDGKRIKVK----------QARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGR 118
Query: 166 AAINRGPGSQGRRGGLR 182
+ GP +G GG R
Sbjct: 119 SRARSGPSCEGNLGGDR 135
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
L +SNL T + + E+F + +K + + +G+P G A + +A DA AL N
Sbjct: 489 LVLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEALNSCN 545
Query: 115 NVLLDGKPMKIEVVGTNA 132
+ ++G+ +++E+ G+N+
Sbjct: 546 KMEIEGRTIRLELQGSNS 563
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
L NL +T D+++E+F + E++ + ++G+ G A + + +DA L+
Sbjct: 397 LLAKNLSFNITEDELKEVFEDAMEIRLVS----QDGKSKGIAYIEFKSEADAEKNLEEKQ 452
Query: 115 NVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRKRTVVMTSGSGNA 162
+DG+ + + G + Q R T +T+V+++ S +A
Sbjct: 453 GAEIDGRSVSLYYTGEKGQ--RQERTGKTSTWSGESKTLVLSNLSYSA 498
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 20 IAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGEL 79
A++ T F + D F D + KL+V NL V + + +LF G +
Sbjct: 59 FARNVAITSEFEVEEDGFAD-VAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 80 KRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125
+ + +DK GR G V + S+ AA +++N LDG+P+++
Sbjct: 118 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKR 112
++YV NL GV + + LFSE G++ + +D++ GR G V Y + A+K
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 113 YNNVLLDGKPMKI 125
+ LDG+ +++
Sbjct: 265 LDGADLDGRQIRV 277
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALK 111
T L V L T D+RE+FS G L + +D + GR G A V + R D+ A++
Sbjct: 117 TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAME 176
Query: 112 RYNNVLLDGKPMKIEV-VGTNAEIP 135
R N + LDG+ ++++ + A P
Sbjct: 177 RANGMELDGRRIRVDYSITKRAHTP 201
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALK 111
T L V L T D+RE+FS G L + +D + GR G A V + R D+ A++
Sbjct: 119 TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAME 178
Query: 112 RYNNVLLDGKPMKIEV-VGTNAEIP 135
R N + LDG+ ++++ + A P
Sbjct: 179 RANGMELDGRRIRVDYSITKRAHTP 203
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
L V+NL + + ++ELF + +K + + GRP G A V + DA AL N
Sbjct: 463 LIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 115 NVLLDGKPMKIE 126
N ++G+ +++E
Sbjct: 520 NTEIEGRAIRLE 531
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKRY 113
L V+NL T D +RE+F K +I +N GR G A + ++ DA A+
Sbjct: 417 LVVNNLSYSATEDSLREVFE-----KATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSC 471
Query: 114 NNVLLDGKPMKIE 126
NN ++G+ +++E
Sbjct: 472 NNTEIEGRSIRLE 484
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
L NL VT D+++E+F + E++ + K+G+ G A + + +DA +
Sbjct: 397 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 452
Query: 115 NVLLDGKPMKIEVVG 129
+DG+ + + G
Sbjct: 453 GTEIDGRSISLYYTG 467
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
L NL VT D+++E+F + E++ + K+G+ G A + + +DA +
Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 450
Query: 115 NVLLDGKPMKIEVVG 129
+DG+ + + G
Sbjct: 451 GTEIDGRSISLYYTG 465
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
L NL VT D+++E+F + E++ + K+G+ G A + + +DA +
Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 451
Query: 115 NVLLDGKPMKIEVVG 129
+DG+ + + G
Sbjct: 452 GTEIDGRSISLYYTG 466
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS-GSAEVVYARRSDAFAALKR 112
K++V L T+D +RE +S+ GE+ + D + S G V ++ +++ AA+K+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 113 YNNVLLDGKPM 123
++ +DGK +
Sbjct: 84 RPHI-IDGKTV 93
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRSDAFAALKRY 113
L+++ ++ + +R F G +K+ IH ++G+P G A + Y D AA K
Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163
Query: 114 NNVLLDGKPMKIEV 127
+ +D K + ++V
Sbjct: 164 DGKKIDSKRVLVDV 177
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 33 QHDLFEDSLRAAGI--SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N 89
+ D+F D +A + + KL+V NL V + + +LF G ++ + +DK
Sbjct: 77 EDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVT 136
Query: 90 GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125
GR G V + ++ AA +++N +G+P+++
Sbjct: 137 GRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKR 112
+LYV NL GV + + LF+E G++ + +D++ GR G V + + A+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 113 YNNVLLDGKPMKI 125
N LDG+ +++
Sbjct: 318 LNGADLDGRQIRV 330
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114
L NL +T D+++E+F + E++ + ++GR G A + + +DA L+
Sbjct: 399 LLAKNLSFNITEDELKEVFEDAVEIRLVS----QDGRSKGIAYIEFKSEADAEKNLEEKQ 454
Query: 115 NVLLDGKPMKIEVVG 129
+DG+ + + G
Sbjct: 455 GAEIDGRSVSLYYTG 469
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALK 111
+KL++ + + D +RE F++ GE+ + D + GR G V + A +A++
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 112 RYNNVLLDGKPMKIEVVGTN 131
LDG+ + VV N
Sbjct: 100 A-----LDGRDLHGRVVKVN 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,109,225
Number of Sequences: 539616
Number of extensions: 5476699
Number of successful extensions: 92952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 865
Number of HSP's that attempted gapping in prelim test: 37099
Number of HSP's gapped (non-prelim): 22897
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)