Query 025976
Match_columns 245
No_of_seqs 288 out of 2466
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.2E-20 2.6E-25 148.1 15.4 83 50-132 32-115 (144)
2 KOG0533 RRM motif-containing p 99.8 1.4E-19 3E-24 151.7 17.7 104 29-132 57-163 (243)
3 TIGR01659 sex-lethal sex-letha 99.8 8.6E-18 1.9E-22 149.5 15.6 81 51-131 192-275 (346)
4 KOG0121 Nuclear cap-binding pr 99.8 1.3E-18 2.7E-23 130.0 7.1 92 32-131 24-116 (153)
5 TIGR01659 sex-lethal sex-letha 99.7 7.2E-17 1.6E-21 143.6 11.1 84 48-131 103-187 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-16 2.7E-21 142.5 12.4 83 50-132 267-350 (352)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-16 2.8E-21 142.4 11.3 82 51-132 2-84 (352)
8 PF00076 RRM_1: RNA recognitio 99.7 1.8E-16 3.9E-21 108.2 9.1 70 55-124 1-70 (70)
9 KOG0105 Alternative splicing f 99.7 2.6E-16 5.6E-21 124.7 10.5 78 50-129 4-81 (241)
10 KOG0122 Translation initiation 99.7 3.1E-16 6.7E-21 129.0 9.8 82 50-131 187-269 (270)
11 KOG0113 U1 small nuclear ribon 99.7 5.5E-16 1.2E-20 130.8 11.0 101 49-149 98-199 (335)
12 KOG0130 RNA-binding protein RB 99.6 4E-16 8.6E-21 117.6 7.0 84 48-131 68-152 (170)
13 TIGR01648 hnRNP-R-Q heterogene 99.6 1.3E-14 2.8E-19 136.0 17.7 77 50-133 231-309 (578)
14 KOG4207 Predicted splicing fac 99.6 7E-16 1.5E-20 124.1 6.9 87 46-132 7-94 (256)
15 KOG0107 Alternative splicing f 99.6 1.6E-15 3.6E-20 119.1 8.2 78 51-132 9-86 (195)
16 PF14259 RRM_6: RNA recognitio 99.6 4.9E-15 1.1E-19 101.7 9.6 70 55-124 1-70 (70)
17 KOG0149 Predicted RNA-binding 99.6 1.2E-15 2.5E-20 125.2 7.1 80 50-130 10-90 (247)
18 TIGR01622 SF-CC1 splicing fact 99.6 1.3E-14 2.9E-19 133.9 13.0 81 49-130 86-167 (457)
19 PLN03120 nucleic acid binding 99.6 1.3E-14 2.8E-19 122.4 11.2 77 52-131 4-80 (260)
20 KOG0117 Heterogeneous nuclear 99.6 2E-15 4.2E-20 133.5 6.4 114 13-134 218-334 (506)
21 KOG0125 Ataxin 2-binding prote 99.6 6.5E-15 1.4E-19 125.8 9.0 85 47-132 91-175 (376)
22 TIGR01645 half-pint poly-U bin 99.6 2.3E-14 5E-19 134.7 11.3 82 51-132 203-285 (612)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.6 4.3E-14 9.4E-19 132.1 12.9 84 49-132 292-376 (509)
24 TIGR01645 half-pint poly-U bin 99.5 1.9E-14 4.1E-19 135.3 10.2 81 49-129 104-185 (612)
25 TIGR01628 PABP-1234 polyadenyl 99.5 2.5E-14 5.5E-19 135.5 11.0 80 53-132 1-81 (562)
26 TIGR01648 hnRNP-R-Q heterogene 99.5 2.9E-14 6.2E-19 133.7 10.5 80 49-128 55-135 (578)
27 smart00362 RRM_2 RNA recogniti 99.5 7E-14 1.5E-18 94.6 9.3 72 54-126 1-72 (72)
28 TIGR01622 SF-CC1 splicing fact 99.5 5E-14 1.1E-18 130.1 11.1 80 52-131 186-266 (457)
29 PLN03213 repressor of silencin 99.5 4.5E-14 9.7E-19 126.4 9.9 80 50-132 8-89 (759)
30 KOG0126 Predicted RNA-binding 99.5 1.8E-15 3.9E-20 119.5 0.5 81 51-131 34-115 (219)
31 TIGR01628 PABP-1234 polyadenyl 99.5 7.5E-14 1.6E-18 132.2 11.4 84 49-132 282-365 (562)
32 PLN03121 nucleic acid binding 99.5 9.5E-14 2.1E-18 115.5 10.6 77 51-130 4-80 (243)
33 KOG0131 Splicing factor 3b, su 99.5 2.9E-14 6.2E-19 112.8 6.1 81 49-129 6-87 (203)
34 KOG0145 RNA-binding protein EL 99.5 1E-13 2.3E-18 115.2 9.0 86 48-133 37-123 (360)
35 KOG0148 Apoptosis-promoting RN 99.5 1.9E-13 4.1E-18 114.2 10.4 79 50-133 162-240 (321)
36 smart00360 RRM RNA recognition 99.5 2.1E-13 4.6E-18 91.9 8.6 70 57-126 1-71 (71)
37 KOG0117 Heterogeneous nuclear 99.5 1.9E-13 4.2E-18 121.0 10.0 85 48-132 79-165 (506)
38 cd00590 RRM RRM (RNA recogniti 99.5 6.3E-13 1.4E-17 90.4 9.9 74 54-127 1-74 (74)
39 COG0724 RNA-binding proteins ( 99.5 4.5E-13 9.8E-18 113.2 10.3 79 52-130 115-194 (306)
40 KOG4212 RNA-binding protein hn 99.4 1.2E-12 2.6E-17 115.8 12.8 80 51-130 43-123 (608)
41 KOG0145 RNA-binding protein EL 99.4 7E-13 1.5E-17 110.3 10.5 84 48-131 274-358 (360)
42 KOG0114 Predicted RNA-binding 99.4 5.8E-13 1.3E-17 96.2 8.6 83 48-132 14-96 (124)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 7.2E-13 1.6E-17 123.4 11.4 79 50-132 273-352 (481)
44 KOG0111 Cyclophilin-type pepti 99.4 1.2E-13 2.7E-18 112.2 4.9 82 51-132 9-91 (298)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9.2E-13 2E-17 122.6 10.7 76 51-131 1-78 (481)
46 KOG0148 Apoptosis-promoting RN 99.4 5.4E-13 1.2E-17 111.5 8.0 83 50-132 60-143 (321)
47 KOG0144 RNA-binding protein CU 99.4 3.5E-13 7.5E-18 118.9 6.0 84 52-135 124-210 (510)
48 KOG0108 mRNA cleavage and poly 99.4 7E-13 1.5E-17 120.2 8.2 80 53-132 19-99 (435)
49 KOG0144 RNA-binding protein CU 99.4 8E-13 1.7E-17 116.7 8.3 85 50-134 32-120 (510)
50 KOG0146 RNA-binding protein ET 99.4 3.2E-13 6.8E-18 112.8 5.4 83 50-132 283-366 (371)
51 KOG0127 Nucleolar protein fibr 99.4 3.1E-12 6.6E-17 115.9 9.6 84 50-133 290-380 (678)
52 KOG0116 RasGAP SH3 binding pro 99.3 8.4E-12 1.8E-16 112.6 12.0 81 51-132 287-368 (419)
53 PF13893 RRM_5: RNA recognitio 99.3 8.7E-12 1.9E-16 81.8 8.3 56 69-128 1-56 (56)
54 KOG0415 Predicted peptidyl pro 99.3 2.3E-12 5E-17 111.3 6.6 84 49-132 236-320 (479)
55 KOG0132 RNA polymerase II C-te 99.3 1.3E-11 2.7E-16 115.8 10.8 75 51-130 420-494 (894)
56 KOG0127 Nucleolar protein fibr 99.3 1E-11 2.2E-16 112.6 9.3 82 51-132 116-197 (678)
57 KOG0124 Polypyrimidine tract-b 99.3 2.1E-12 4.5E-17 112.0 4.7 76 52-127 113-189 (544)
58 KOG0147 Transcriptional coacti 99.3 5.8E-12 1.3E-16 114.3 6.8 79 54-132 280-359 (549)
59 smart00361 RRM_1 RNA recogniti 99.3 2.2E-11 4.8E-16 83.8 8.0 60 66-125 2-69 (70)
60 KOG0109 RNA-binding protein LA 99.3 6.2E-12 1.3E-16 106.2 6.0 72 53-131 3-74 (346)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.2 8.1E-11 1.8E-15 110.1 9.3 72 51-128 174-257 (509)
62 KOG0109 RNA-binding protein LA 99.2 3.1E-11 6.7E-16 102.0 5.6 77 49-132 75-151 (346)
63 KOG4208 Nucleolar RNA-binding 99.2 1.1E-10 2.5E-15 94.2 8.4 84 48-131 45-130 (214)
64 KOG4206 Spliceosomal protein s 99.1 1.5E-10 3.2E-15 94.9 8.3 84 48-133 5-92 (221)
65 KOG0123 Polyadenylate-binding 99.1 1.5E-10 3.2E-15 104.0 8.7 78 54-133 78-155 (369)
66 KOG0131 Splicing factor 3b, su 99.1 1.2E-10 2.6E-15 92.4 6.9 85 48-132 92-178 (203)
67 KOG0153 Predicted RNA-binding 99.1 3.1E-10 6.6E-15 98.1 8.3 81 45-130 221-302 (377)
68 KOG4661 Hsp27-ERE-TATA-binding 99.1 2.8E-10 6.1E-15 103.8 7.5 83 51-133 404-487 (940)
69 KOG0123 Polyadenylate-binding 99.1 5.2E-10 1.1E-14 100.5 8.2 76 53-133 2-77 (369)
70 KOG0146 RNA-binding protein ET 99.0 4E-10 8.7E-15 94.4 6.1 83 51-133 18-103 (371)
71 KOG4212 RNA-binding protein hn 99.0 5.3E-10 1.2E-14 99.2 7.0 77 48-128 532-608 (608)
72 KOG4205 RNA-binding protein mu 99.0 3.5E-10 7.5E-15 98.7 5.8 84 51-135 5-89 (311)
73 KOG0110 RNA-binding protein (R 99.0 8.3E-10 1.8E-14 103.0 8.4 79 51-129 514-596 (725)
74 KOG0124 Polypyrimidine tract-b 99.0 7.2E-10 1.6E-14 96.4 7.3 82 51-132 209-291 (544)
75 KOG0110 RNA-binding protein (R 99.0 3.9E-10 8.4E-15 105.2 5.0 84 50-133 611-695 (725)
76 KOG4454 RNA binding protein (R 99.0 2.2E-10 4.7E-15 93.4 2.9 92 47-139 4-95 (267)
77 KOG1548 Transcription elongati 99.0 1.7E-09 3.6E-14 93.6 8.4 83 49-131 131-221 (382)
78 KOG4205 RNA-binding protein mu 98.9 3.3E-09 7.1E-14 92.7 6.2 84 51-135 96-180 (311)
79 PF13865 FoP_duplication: C-te 98.8 1.3E-08 2.9E-13 70.5 6.9 21 223-243 37-57 (74)
80 KOG1457 RNA binding protein (c 98.8 3.1E-08 6.8E-13 81.2 10.1 83 51-133 33-120 (284)
81 KOG4209 Splicing factor RNPS1, 98.8 7E-09 1.5E-13 87.3 6.2 82 49-131 98-180 (231)
82 KOG1995 Conserved Zn-finger pr 98.8 2.2E-08 4.8E-13 87.2 9.3 85 49-133 63-156 (351)
83 PF04059 RRM_2: RNA recognitio 98.8 3.7E-08 8.1E-13 71.7 8.9 78 53-130 2-86 (97)
84 KOG0106 Alternative splicing f 98.8 5.3E-09 1.1E-13 86.4 4.0 72 53-131 2-73 (216)
85 KOG0226 RNA-binding proteins [ 98.6 6.4E-08 1.4E-12 80.7 5.5 94 29-130 175-269 (290)
86 KOG4660 Protein Mei2, essentia 98.6 5.1E-08 1.1E-12 89.1 4.4 72 49-124 72-143 (549)
87 KOG4211 Splicing factor hnRNP- 98.6 2.8E-07 6E-12 83.3 8.8 80 50-132 8-87 (510)
88 KOG0151 Predicted splicing reg 98.5 1.9E-07 4.1E-12 87.5 7.1 84 49-132 171-258 (877)
89 KOG1190 Polypyrimidine tract-b 98.5 5.3E-07 1.1E-11 79.8 8.7 78 52-133 297-375 (492)
90 KOG0120 Splicing factor U2AF, 98.4 2.2E-07 4.8E-12 85.4 4.7 86 48-133 285-371 (500)
91 KOG4211 Splicing factor hnRNP- 98.4 9.6E-07 2.1E-11 79.9 7.7 79 50-129 101-180 (510)
92 KOG0147 Transcriptional coacti 98.3 3.4E-07 7.4E-12 83.7 3.2 81 50-131 177-258 (549)
93 PF08777 RRM_3: RNA binding mo 98.3 1.7E-06 3.6E-11 64.2 6.2 76 52-132 1-81 (105)
94 KOG4849 mRNA cleavage factor I 98.2 3.1E-06 6.7E-11 73.7 6.4 78 52-129 80-160 (498)
95 KOG1457 RNA binding protein (c 98.1 3.5E-06 7.5E-11 69.4 5.0 68 48-118 206-273 (284)
96 KOG4307 RNA binding protein RB 98.1 9.3E-06 2E-10 76.3 8.3 77 51-127 865-943 (944)
97 KOG0106 Alternative splicing f 98.1 1.8E-06 3.8E-11 71.5 3.1 71 50-127 97-167 (216)
98 KOG4206 Spliceosomal protein s 98.1 1.6E-05 3.4E-10 65.6 8.0 78 48-129 142-220 (221)
99 PF11608 Limkain-b1: Limkain b 98.1 2.4E-05 5.2E-10 54.9 7.2 70 53-131 3-77 (90)
100 KOG1365 RNA-binding protein Fu 97.9 2.4E-05 5.3E-10 69.0 5.4 82 50-131 278-362 (508)
101 KOG4210 Nuclear localization s 97.8 1.1E-05 2.3E-10 70.3 2.9 80 52-132 184-265 (285)
102 KOG1456 Heterogeneous nuclear 97.8 0.00014 3E-09 64.2 9.3 84 48-135 283-367 (494)
103 KOG1855 Predicted RNA-binding 97.8 1.6E-05 3.4E-10 71.0 3.6 76 51-126 230-319 (484)
104 KOG1548 Transcription elongati 97.8 0.00014 3.1E-09 63.4 9.0 81 48-131 261-352 (382)
105 KOG2314 Translation initiation 97.8 0.00015 3.2E-09 67.0 9.4 79 50-128 56-141 (698)
106 COG5175 MOT2 Transcriptional r 97.7 6.8E-05 1.5E-09 65.2 6.3 80 51-130 113-202 (480)
107 KOG0105 Alternative splicing f 97.7 0.0002 4.4E-09 57.5 8.3 69 46-120 109-177 (241)
108 KOG1190 Polypyrimidine tract-b 97.7 0.00012 2.5E-09 65.3 6.9 79 50-131 412-491 (492)
109 KOG3152 TBP-binding protein, a 97.6 6.3E-05 1.4E-09 63.1 4.1 71 52-122 74-157 (278)
110 KOG0129 Predicted RNA-binding 97.6 0.00022 4.8E-09 65.3 7.5 68 45-112 363-432 (520)
111 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00021 4.6E-09 46.2 5.3 52 53-110 2-53 (53)
112 KOG2202 U2 snRNP splicing fact 97.6 4.5E-05 9.8E-10 64.1 2.6 66 67-132 83-149 (260)
113 KOG1456 Heterogeneous nuclear 97.5 0.00081 1.8E-08 59.4 9.5 86 43-132 111-200 (494)
114 KOG0120 Splicing factor U2AF, 97.4 0.00046 9.9E-09 63.9 7.1 64 68-131 425-492 (500)
115 KOG2416 Acinus (induces apopto 97.3 0.00018 3.8E-09 66.9 3.7 81 47-132 439-523 (718)
116 PF08952 DUF1866: Domain of un 97.3 0.0016 3.6E-08 50.6 8.1 58 68-133 52-109 (146)
117 KOG4676 Splicing factor, argin 97.2 0.00066 1.4E-08 60.3 5.9 76 53-129 8-87 (479)
118 KOG1365 RNA-binding protein Fu 97.2 0.00049 1.1E-08 61.0 4.6 77 51-128 160-240 (508)
119 KOG0128 RNA-binding protein SA 97.2 0.00015 3.3E-09 69.7 1.5 82 51-132 735-816 (881)
120 KOG0129 Predicted RNA-binding 97.1 0.0018 3.9E-08 59.5 7.9 63 50-113 257-326 (520)
121 KOG4307 RNA binding protein RB 97.1 0.00033 7.1E-09 66.2 3.1 79 49-127 431-510 (944)
122 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0025 5.5E-08 46.7 7.1 76 52-129 6-90 (100)
123 KOG0115 RNA-binding protein p5 96.8 0.0017 3.8E-08 54.7 4.1 76 53-128 32-111 (275)
124 KOG0128 RNA-binding protein SA 96.7 8.7E-05 1.9E-09 71.4 -4.3 67 53-119 668-735 (881)
125 PF10309 DUF2414: Protein of u 96.7 0.0098 2.1E-07 39.6 6.7 54 53-113 6-62 (62)
126 PF13865 FoP_duplication: C-te 96.7 0.0037 8E-08 43.2 4.9 19 225-243 54-72 (74)
127 KOG0112 Large RNA-binding prot 96.7 0.003 6.6E-08 61.4 5.9 80 48-132 451-532 (975)
128 KOG1996 mRNA splicing factor [ 96.7 0.0059 1.3E-07 52.5 6.9 64 67-130 301-366 (378)
129 PF08675 RNA_bind: RNA binding 96.3 0.02 4.3E-07 40.3 6.6 56 52-115 9-64 (87)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.01 2.2E-07 48.1 5.5 80 51-130 6-97 (176)
131 KOG2193 IGF-II mRNA-binding pr 96.2 0.0045 9.8E-08 55.7 3.5 73 53-132 2-77 (584)
132 KOG2591 c-Mpl binding protein, 95.9 0.014 3E-07 54.3 5.3 72 50-127 173-248 (684)
133 KOG2068 MOT2 transcription fac 95.8 0.0034 7.4E-08 54.9 1.1 80 53-132 78-164 (327)
134 KOG0112 Large RNA-binding prot 95.6 0.0041 8.8E-08 60.6 0.7 79 50-128 370-448 (975)
135 PRK11634 ATP-dependent RNA hel 95.6 0.27 5.8E-06 47.7 13.1 67 54-129 488-561 (629)
136 KOG4660 Protein Mei2, essentia 95.3 0.025 5.5E-07 52.5 4.8 83 49-131 385-473 (549)
137 KOG3973 Uncharacterized conser 95.3 0.057 1.2E-06 47.6 6.6 17 195-211 436-452 (465)
138 PF15023 DUF4523: Protein of u 95.2 0.14 2.9E-06 39.8 7.8 74 49-129 83-160 (166)
139 KOG2135 Proteins containing th 95.2 0.016 3.5E-07 52.8 3.0 74 53-132 373-447 (526)
140 PF04847 Calcipressin: Calcipr 95.2 0.081 1.8E-06 43.1 6.8 63 65-132 8-72 (184)
141 PF03880 DbpA: DbpA RNA bindin 95.1 0.14 2.9E-06 35.3 6.8 59 62-128 11-74 (74)
142 KOG2253 U1 snRNP complex, subu 94.6 0.023 4.9E-07 53.9 2.5 72 48-127 36-107 (668)
143 PF11767 SET_assoc: Histone ly 94.2 0.26 5.5E-06 33.2 6.2 54 64-125 12-65 (66)
144 PF07576 BRAP2: BRCA1-associat 94.0 1 2.2E-05 33.5 9.8 70 51-121 11-82 (110)
145 KOG4210 Nuclear localization s 93.0 0.073 1.6E-06 46.5 2.6 81 51-131 87-168 (285)
146 KOG4285 Mitotic phosphoprotein 92.3 0.51 1.1E-05 41.1 6.7 70 55-131 200-270 (350)
147 KOG4574 RNA-binding protein (c 92.0 0.11 2.4E-06 50.7 2.7 72 56-132 302-375 (1007)
148 KOG2318 Uncharacterized conser 91.9 0.67 1.4E-05 43.7 7.4 79 49-127 171-302 (650)
149 KOG0804 Cytoplasmic Zn-finger 91.3 1.1 2.3E-05 41.1 7.9 70 51-121 73-143 (493)
150 KOG2193 IGF-II mRNA-binding pr 85.7 0.037 8.1E-07 50.0 -5.1 80 50-131 78-157 (584)
151 KOG4410 5-formyltetrahydrofola 84.5 7.6 0.00016 33.7 8.4 48 51-103 329-377 (396)
152 KOG4019 Calcineurin-mediated s 84.4 0.81 1.8E-05 36.9 2.4 77 51-132 9-91 (193)
153 KOG3262 H/ACA small nucleolar 82.1 12 0.00026 30.4 8.1 6 76-81 98-103 (215)
154 KOG4676 Splicing factor, argin 80.6 0.23 5E-06 44.6 -2.2 75 53-131 152-226 (479)
155 KOG4483 Uncharacterized conser 80.5 4 8.6E-05 37.0 5.5 54 52-111 391-445 (528)
156 KOG3262 H/ACA small nucleolar 78.2 35 0.00077 27.8 10.6 10 96-105 81-90 (215)
157 PF03468 XS: XS domain; Inter 75.4 2.5 5.5E-05 31.7 2.4 51 53-105 9-68 (116)
158 KOG4365 Uncharacterized conser 73.5 0.55 1.2E-05 42.9 -1.9 79 53-132 4-83 (572)
159 PF10567 Nab6_mRNP_bdg: RNA-re 72.4 9.1 0.0002 33.4 5.3 78 52-129 15-106 (309)
160 KOG4454 RNA binding protein (R 70.7 1.1 2.3E-05 37.4 -0.6 69 50-118 78-150 (267)
161 KOG4213 RNA-binding protein La 68.8 6.8 0.00015 31.7 3.5 55 53-112 112-169 (205)
162 KOG2295 C2H2 Zn-finger protein 67.4 0.85 1.9E-05 42.8 -2.0 70 51-120 230-300 (648)
163 smart00596 PRE_C2HC PRE_C2HC d 66.7 8.2 0.00018 26.1 3.1 59 67-128 2-62 (69)
164 COG0724 RNA-binding proteins ( 65.7 8.7 0.00019 31.5 3.9 61 48-108 221-282 (306)
165 PF15513 DUF4651: Domain of un 64.8 17 0.00036 24.1 4.2 21 66-86 8-28 (62)
166 PF07530 PRE_C2HC: Associated 59.2 20 0.00042 24.2 3.9 60 67-129 2-63 (68)
167 KOG1295 Nonsense-mediated deca 58.8 12 0.00026 33.8 3.5 68 51-118 6-77 (376)
168 PRK11901 hypothetical protein; 55.5 40 0.00086 30.0 6.2 61 50-115 243-306 (327)
169 PF02714 DUF221: Domain of unk 55.0 14 0.0003 32.4 3.5 36 96-133 1-36 (325)
170 PF14893 PNMA: PNMA 52.2 16 0.00034 32.7 3.3 64 36-103 5-72 (331)
171 COG5638 Uncharacterized conser 51.6 43 0.00092 30.8 5.8 73 49-121 143-286 (622)
172 KOG4008 rRNA processing protei 51.6 13 0.00029 31.4 2.5 34 49-82 37-70 (261)
173 COG1512 Beta-propeller domains 51.6 22 0.00049 30.8 4.0 36 53-88 64-107 (271)
174 PF15063 TC1: Thyroid cancer p 48.2 12 0.00027 25.7 1.5 50 18-80 4-53 (79)
175 TIGR03636 L23_arch archaeal ri 47.0 78 0.0017 21.9 5.4 56 55-112 16-73 (77)
176 COG4907 Predicted membrane pro 46.1 19 0.00041 33.5 2.9 8 105-112 527-534 (595)
177 PRK14548 50S ribosomal protein 44.5 83 0.0018 22.2 5.3 55 57-113 25-81 (84)
178 KOG3293 Small nuclear ribonucl 43.7 39 0.00084 25.5 3.7 12 113-124 56-67 (134)
179 PRK06958 single-stranded DNA-b 42.3 54 0.0012 26.7 4.7 12 52-63 5-16 (182)
180 PRK10905 cell division protein 42.2 1.2E+02 0.0025 27.0 7.0 61 51-115 246-308 (328)
181 KOG2891 Surface glycoprotein [ 42.2 48 0.001 28.9 4.5 70 49-118 146-247 (445)
182 PF03791 KNOX2: KNOX2 domain ; 42.0 10 0.00022 24.2 0.4 10 231-240 7-16 (52)
183 PF07292 NID: Nmi/IFP 35 domai 40.8 17 0.00036 26.0 1.3 24 50-73 50-73 (88)
184 PRK11230 glycolate oxidase sub 40.0 1E+02 0.0022 29.1 6.9 49 66-114 203-255 (499)
185 COG5193 LHP1 La protein, small 39.8 13 0.00029 33.8 0.9 59 53-111 175-244 (438)
186 COG0030 KsgA Dimethyladenosine 38.0 36 0.00079 29.3 3.2 33 52-84 95-127 (259)
187 PF08599 Nbs1_C: DNA damage re 36.0 13 0.00027 24.6 0.1 14 232-245 35-48 (65)
188 PF07292 NID: Nmi/IFP 35 domai 34.6 61 0.0013 23.1 3.4 32 96-128 1-34 (88)
189 PF00403 HMA: Heavy-metal-asso 32.8 1.3E+02 0.0028 18.9 6.5 54 54-112 1-58 (62)
190 PF09707 Cas_Cas2CT1978: CRISP 32.4 1.1E+02 0.0023 21.7 4.4 50 50-101 23-72 (86)
191 KOG3702 Nuclear polyadenylated 29.1 26 0.00057 33.9 1.0 73 53-126 512-585 (681)
192 PF13037 DUF3898: Domain of un 28.8 1E+02 0.0022 21.9 3.7 77 30-113 4-89 (91)
193 PF08156 NOP5NT: NOP5NT (NUC12 27.9 19 0.00041 24.1 -0.1 37 67-113 27-64 (67)
194 COG4371 Predicted membrane pro 27.5 1.7E+02 0.0037 25.2 5.4 15 227-241 156-170 (334)
195 PHA01632 hypothetical protein 26.5 66 0.0014 20.8 2.2 21 55-75 19-39 (64)
196 PLN02805 D-lactate dehydrogena 26.0 2.6E+02 0.0056 26.9 7.1 50 65-114 279-332 (555)
197 PF11411 DNA_ligase_IV: DNA li 25.2 54 0.0012 19.2 1.5 16 62-77 19-34 (36)
198 COG3254 Uncharacterized conser 24.8 2.5E+02 0.0054 20.7 5.2 42 67-110 27-68 (105)
199 TIGR00387 glcD glycolate oxida 24.7 2.2E+02 0.0047 26.1 6.2 63 52-114 131-198 (413)
200 PRK10629 EnvZ/OmpR regulon mod 24.1 3.2E+02 0.007 20.7 7.9 71 52-129 35-109 (127)
201 PF10957 DUF2758: Protein of u 24.1 62 0.0014 21.3 1.8 17 226-242 10-26 (60)
202 PF03439 Spt5-NGN: Early trans 23.7 1E+02 0.0022 21.4 3.0 27 91-117 42-68 (84)
203 COG1512 Beta-propeller domains 23.1 1.2E+02 0.0026 26.3 3.9 9 56-64 35-43 (271)
204 PF00398 RrnaAD: Ribosomal RNA 22.1 90 0.002 26.5 3.0 24 51-74 96-119 (262)
205 KOG3424 40S ribosomal protein 21.4 2.1E+02 0.0045 21.6 4.3 44 63-107 34-83 (132)
206 COG0150 PurM Phosphoribosylami 21.0 27 0.00058 31.3 -0.5 47 67-116 276-322 (345)
207 PF12687 DUF3801: Protein of u 21.0 2.4E+02 0.0053 23.2 5.2 55 64-120 39-97 (204)
208 PRK06958 single-stranded DNA-b 21.0 1.9E+02 0.0042 23.5 4.5 13 223-235 168-180 (182)
209 PRK00274 ksgA 16S ribosomal RN 21.0 1E+02 0.0022 26.4 3.1 22 54-75 107-128 (272)
210 PF05189 RTC_insert: RNA 3'-te 20.7 2.2E+02 0.0047 20.4 4.4 47 54-100 12-64 (103)
211 PRK01178 rps24e 30S ribosomal 20.6 2.7E+02 0.0059 20.2 4.8 44 63-107 30-79 (99)
212 PTZ00338 dimethyladenosine tra 20.4 94 0.002 27.2 2.8 22 54-75 103-124 (294)
213 CHL00123 rps6 ribosomal protei 20.1 3.4E+02 0.0073 19.4 6.3 68 54-125 10-92 (97)
214 KOG2187 tRNA uracil-5-methyltr 20.0 91 0.002 29.6 2.7 40 93-132 63-102 (534)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.2e-20 Score=148.07 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...++|||+|||++++|++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
....
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7543
No 2
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.84 E-value=1.4e-19 Score=151.68 Aligned_cols=104 Identities=47% Similarity=0.808 Sum_probs=88.2
Q ss_pred CCCCCc--chhhhhhhhcCC-CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHH
Q 025976 29 NFPWQH--DLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSD 105 (245)
Q Consensus 29 ~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~ 105 (245)
+.+|+| +.+......... ......++|+|.|||+.|+++||++||..|+.++.+.|.+++.|.+.|.|-|.|...++
T Consensus 57 ~~~w~~~~~v~~~~~~~~~~~~~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~D 136 (243)
T KOG0533|consen 57 DGKWQHDRDVFRSAKRLGAVGINETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDD 136 (243)
T ss_pred CCcccchHHHHhcccccccccccCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHh
Confidence 578999 444444332000 13344588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 106 AFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 106 a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
|.+||+.||++.|+|+.|++.++....
T Consensus 137 A~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 137 AERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred HHHHHHHhcCcccCCceeeeEEecCcc
Confidence 999999999999999999999887655
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=8.6e-18 Score=149.50 Aligned_cols=81 Identities=32% Similarity=0.588 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC--ceeEEEE
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 127 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g--~~l~V~~ 127 (245)
..++|||.|||+.+|+++|+++|++||.|+.|.|+.++ ++++++||||+|.+.++|++||+.||++.|.+ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998 99999999999999999999999999998876 6788888
Q ss_pred ecCC
Q 025976 128 VGTN 131 (245)
Q Consensus 128 a~~~ 131 (245)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8754
No 4
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.3e-18 Score=129.97 Aligned_cols=92 Identities=30% Similarity=0.434 Sum_probs=82.7
Q ss_pred CCcchhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHH
Q 025976 32 WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAAL 110 (245)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai 110 (245)
-...+++++.+ .++||||+||++.++|++|.+||+.+|+|..|.|-.|+ +..++|||||+|.+.++|+.|+
T Consensus 24 gt~~e~~~a~r--------~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 24 GTDEEQLEALR--------KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred CchHHHHHHHh--------hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHH
Confidence 34555555554 67999999999999999999999999999999999999 8899999999999999999999
Q ss_pred HHhCCceeCCceeEEEEecCC
Q 025976 111 KRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 111 ~~l~~~~l~g~~l~V~~a~~~ 131 (245)
+.++++.|+.++|.|.|...-
T Consensus 96 ryisgtrLddr~ir~D~D~GF 116 (153)
T KOG0121|consen 96 RYISGTRLDDRPIRIDWDAGF 116 (153)
T ss_pred HHhccCcccccceeeeccccc
Confidence 999999999999999987543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=7.2e-17 Score=143.59 Aligned_cols=84 Identities=26% Similarity=0.369 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.....++|||+|||+++|+++|+++|+.||+|+.|+|+.|+ +++++|||||+|.++++|++||+.||++.|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCC
Q 025976 127 VVGTN 131 (245)
Q Consensus 127 ~a~~~ 131 (245)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1.3e-16 Score=142.46 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..+.+|||.|||+.+++++|+++|++||.|.+|+|+.|. ++.++|||||+|.+.++|.+||..||+..|+|+.|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 344579999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
....
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7654
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.3e-16 Score=142.37 Aligned_cols=82 Identities=32% Similarity=0.464 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
+.++|||+|||+.+++++|+++|+.||+|..|.|+.++ +++++|||||+|.+.++|++||+.||+..|.++.|.|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 554
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.8e-16 Score=108.24 Aligned_cols=70 Identities=31% Similarity=0.613 Sum_probs=67.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 55 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
|||+|||+++++++|+++|++||.|..+.+..+.++..++||||+|.+.++|+.|++.|++..|.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999875
No 9
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.6e-16 Score=124.67 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
...++|||+|||.++-+.+|++||.+||.|..|.|...+ ....||||+|+++-+|+.||..-++..++++.|.|+++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 356899999999999999999999999999999887544 224699999999999999999999999999999999764
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.1e-16 Score=129.03 Aligned_cols=82 Identities=28% Similarity=0.392 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
+..++|.|.||+.+++|++|++||..||.|..|.|..|+ ||.++|||||+|.+.++|.+||+.||++-+++..|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356889999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCC
Q 025976 129 GTN 131 (245)
Q Consensus 129 ~~~ 131 (245)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 11
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=5.5e-16 Score=130.78 Aligned_cols=101 Identities=26% Similarity=0.377 Sum_probs=94.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.++-+||||.-|+++++|..|+..|+.||+|+.|.|+.|+ |++++|||||+|.++-+..+|.+..++.+|+++.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4677999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccccccCCCCCCCc
Q 025976 128 VGTNAEIPLQARVNVTGVNGRR 149 (245)
Q Consensus 128 a~~~~~~~~~~r~~~~g~~g~~ 149 (245)
-.....+.+.+|....|+++..
T Consensus 178 ERgRTvkgW~PRRLGGGLGg~r 199 (335)
T KOG0113|consen 178 ERGRTVKGWLPRRLGGGLGGRR 199 (335)
T ss_pred cccccccccccccccCCcCCcc
Confidence 9999988888888877777655
No 12
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=4e-16 Score=117.64 Aligned_cols=84 Identities=26% Similarity=0.409 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
-...+..|||.+++.+++|++|.+.|..||+|++|.|..|+ ||..+|||+|+|++.++|++||..||+..|.++.|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34567899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EecCC
Q 025976 127 VVGTN 131 (245)
Q Consensus 127 ~a~~~ 131 (245)
|+...
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 98754
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=1.3e-14 Score=135.99 Aligned_cols=77 Identities=27% Similarity=0.357 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...++|||+||++++++++|+++|++| |.|++|.++ ++||||+|.+.++|++||+.||+..|+++.|+|.+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456889999999999999999999999 999999876 46999999999999999999999999999999999
Q ss_pred ecCCCC
Q 025976 128 VGTNAE 133 (245)
Q Consensus 128 a~~~~~ 133 (245)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987653
No 14
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.62 E-value=7e-16 Score=124.12 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=81.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 46 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
+|..+.-++|.|.||.+.++.++|..+|++||.|.+|.|..|+ |..++|||||-|....+|+.|++.|++.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 4555667899999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 025976 125 IEVVGTNA 132 (245)
Q Consensus 125 V~~a~~~~ 132 (245)
|++|+-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99998654
No 15
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.6e-15 Score=119.09 Aligned_cols=78 Identities=24% Similarity=0.334 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
-.++|||+||+..+++.+|+.+|..||+|..|.|-.++ .|||||||+++-+|+.|+..|++..|+|..|.|++++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 46899999999999999999999999999999888754 68999999999999999999999999999999999986
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 65
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=4.9e-15 Score=101.70 Aligned_cols=70 Identities=33% Similarity=0.596 Sum_probs=64.8
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 55 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
|||+|||+++++++|.++|+.||.|..|.+..++.+..+++|||+|.++++|+.|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998788899999999999999999999999999999874
No 17
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=125.17 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..-++|||++|+|+++.++|+++|++||+|+++.|+.|+ ++++|||+||+|.+.++|.+|++. .+-.|+|++..|.||
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 455899999999999999999999999999999999999 999999999999999999999965 668899999999887
Q ss_pred cC
Q 025976 129 GT 130 (245)
Q Consensus 129 ~~ 130 (245)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 64
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=1.3e-14 Score=133.90 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
....++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||. |++..|.+++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999998 89999999999999999999995 899999999999987
Q ss_pred ecC
Q 025976 128 VGT 130 (245)
Q Consensus 128 a~~ 130 (245)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 654
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.3e-14 Score=122.43 Aligned_cols=77 Identities=22% Similarity=0.241 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
.++|||+||++.+++++|+++|+.||.|.+|.|+.+. ..++||||+|.++++|+.|| .||+..|.++.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 5799999999999999999999999999999999886 24689999999999999999 59999999999999998644
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=2e-15 Score=133.47 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=98.3
Q ss_pred CCCCCcccccccccCCCCCCCcchhhhhhhhcCCCC---CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCC
Q 025976 13 ARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISG---IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN 89 (245)
Q Consensus 13 ~R~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~t 89 (245)
-|..+|+++|.. ...-..|.|.-..+|......+. +..-+.|||.||+.++||+.|+++|++||.|.+|+.+.|
T Consensus 218 H~~Aa~aRrKl~-~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-- 294 (506)
T KOG0117|consen 218 HRAAAMARRKLM-PGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-- 294 (506)
T ss_pred chhHHHHHhhcc-CCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--
Confidence 455667777666 44558999999999997666553 445578999999999999999999999999999988855
Q ss_pred CCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCCCC
Q 025976 90 GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEI 134 (245)
Q Consensus 90 g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~~~ 134 (245)
||||.|.+.++|.+||+.+|+.+|+|..|.|.+|++....
T Consensus 295 -----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 295 -----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred -----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 9999999999999999999999999999999999987743
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=6.5e-15 Score=125.78 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=78.1
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
+..+..++|+|+|||+..-|-||+.+|.+||.|.+|+|+.+.-| +|||+||+|++.++|++|-++||+..|.|++|+|.
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34556689999999999999999999999999999999998754 58999999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
.++.+.
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 988764
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=2.3e-14 Score=134.66 Aligned_cols=82 Identities=20% Similarity=0.339 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++|||+||++++++++|+++|+.||.|.+|.|..++ ++.++|||||+|.+.++|.+||+.||++.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998 78999999999999999999999999999999999999887
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
..+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.55 E-value=4.3e-14 Score=132.15 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.||++.|.++.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+....
T Consensus 372 a~~~~ 376 (509)
T TIGR01642 372 ACVGA 376 (509)
T ss_pred CccCC
Confidence 87543
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.55 E-value=1.9e-14 Score=135.26 Aligned_cols=81 Identities=26% Similarity=0.447 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
....++|||+||++.+++++|+++|..||.|.+|.|+.|+ +++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999985
Q ss_pred ec
Q 025976 128 VG 129 (245)
Q Consensus 128 a~ 129 (245)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=2.5e-14 Score=135.46 Aligned_cols=80 Identities=30% Similarity=0.438 Sum_probs=75.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
.+|||+|||+++||++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|++||+.||...|.++.|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 379999999999999999999999999999999999 7999999999999999999999999999999999999998654
Q ss_pred C
Q 025976 132 A 132 (245)
Q Consensus 132 ~ 132 (245)
.
T Consensus 81 ~ 81 (562)
T TIGR01628 81 P 81 (562)
T ss_pred c
Confidence 3
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=2.9e-14 Score=133.67 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~-g~~l~V~~ 127 (245)
....++|||+|||++++|++|.++|++||.|..|+|+.|.++.++|||||+|.+.++|++||+.||+..|. ++.|.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34569999999999999999999999999999999999999999999999999999999999999998885 66665543
Q ss_pred e
Q 025976 128 V 128 (245)
Q Consensus 128 a 128 (245)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 3
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=7e-14 Score=94.63 Aligned_cols=72 Identities=38% Similarity=0.657 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
+|||.|||..+++++|+++|.+||.|..+.+..++ +.++++|||+|.+.++|+.|++.|++..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998877 6788999999999999999999999999999998863
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=5e-14 Score=130.12 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=76.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.++.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5899999999999999999999999999999999998 789999999999999999999999999999999999999874
Q ss_pred C
Q 025976 131 N 131 (245)
Q Consensus 131 ~ 131 (245)
.
T Consensus 266 ~ 266 (457)
T TIGR01622 266 S 266 (457)
T ss_pred C
Confidence 3
No 29
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=4.5e-14 Score=126.37 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccH--HHHHHHHHHhCCceeCCceeEEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR--SDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~--e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
....+|||+||++.+++++|..+|+.||.|..|.|++. +| +|||||+|.+. .++.+||..||+..|.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45689999999999999999999999999999999933 56 89999999987 789999999999999999999998
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
|++.-
T Consensus 85 AKP~Y 89 (759)
T PLN03213 85 AKEHY 89 (759)
T ss_pred ccHHH
Confidence 87643
No 30
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.8e-15 Score=119.53 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
.+.-|||+|||+++||.||..+|++||+|+.|.|++|+ ||+++||||+.|++.-+...||..||++.|.++.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 44679999999999999999999999999999999999 99999999999999999999999999999999999998654
Q ss_pred CC
Q 025976 130 TN 131 (245)
Q Consensus 130 ~~ 131 (245)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 43
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=7.5e-14 Score=132.24 Aligned_cols=84 Identities=31% Similarity=0.532 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
....++|||+||++.+++++|+++|+.||.|.+|.|+.+.++.++|||||+|.+.++|++||..||+..|.+++|.|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8654
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=9.5e-14 Score=115.51 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
.+.+|||+||++.+|+++|+++|+.||+|.+|.|+.+. ...+||||+|.++++|+.|+ .|++..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999885 44579999999999999999 6999999999999987654
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.50 E-value=2.9e-14 Score=112.79 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.+...||||+||+..++++.|++||-+.|+|.+|.|..|+ +..++|||||+|.++|+|+-||+.||.++|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4567899999999999999999999999999999999999 888999999999999999999999999999999999998
Q ss_pred ec
Q 025976 128 VG 129 (245)
Q Consensus 128 a~ 129 (245)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1e-13 Score=115.23 Aligned_cols=86 Identities=31% Similarity=0.456 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..+..+.|.|.-||.++|+++|+.||...|+|++|++++|+ +|++.||+||.|.++++|++||..||+..|..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34566889999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 025976 127 VVGTNAE 133 (245)
Q Consensus 127 ~a~~~~~ 133 (245)
++.+..+
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9988663
No 35
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.9e-13 Score=114.21 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
...|+|||+||+..++|++|++.|+.||.|.+|+|..+ +||+||.|.+.|+|..||..+|+.+|.|+.+++.|-+
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 47899999999999999999999999999999999966 6999999999999999999999999999999999988
Q ss_pred CCCC
Q 025976 130 TNAE 133 (245)
Q Consensus 130 ~~~~ 133 (245)
....
T Consensus 237 e~~~ 240 (321)
T KOG0148|consen 237 EGDD 240 (321)
T ss_pred cCCC
Confidence 7653
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2.1e-13 Score=91.86 Aligned_cols=70 Identities=40% Similarity=0.654 Sum_probs=65.7
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 57 VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 57 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
|.|||..+++++|+++|.+||.|..+.+..++ ++.++++|||+|.+.++|..|++.|++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999888 68899999999999999999999999999999998873
No 37
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.9e-13 Score=120.98 Aligned_cols=85 Identities=26% Similarity=0.417 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCcee-CCceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL-DGKPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l-~g~~l~V 125 (245)
....+|.|||+.||.++.|++|.-||++.|+|-+++|+.|+ +|.++|||||+|.+.++|+.||+.||+++| .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 34678999999999999999999999999999999999998 999999999999999999999999999988 4888887
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
+++..+.
T Consensus 159 c~Svan~ 165 (506)
T KOG0117|consen 159 CVSVANC 165 (506)
T ss_pred EEeeecc
Confidence 7654443
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=6.3e-13 Score=90.35 Aligned_cols=74 Identities=39% Similarity=0.631 Sum_probs=69.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
+|+|.|||+.+++++|+++|..||.|..+.+..++...++++|||+|.+.++|..|++.+++..+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999888557789999999999999999999999999999998863
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=4.5e-13 Score=113.17 Aligned_cols=79 Identities=32% Similarity=0.554 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
.++|||+|||+.+++++|.++|..||.|..|.|..++ ++.++|||||+|.+.++|..|+..+++..|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999997 999999999999999999999999999999999999999653
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.45 E-value=1.2e-12 Score=115.75 Aligned_cols=80 Identities=19% Similarity=0.410 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..+.+||.|||+++.+++|++||. +.|+|.+|+|+.|.+++++|||.|||+++|.+++|++.||.+.+.+++|.|....
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 446699999999999999999994 7899999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 025976 130 T 130 (245)
Q Consensus 130 ~ 130 (245)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=7e-13 Score=110.34 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
....+..|||-||.++++|.-|+.+|.+||.|..|+|++|. +.++|||+||++.+.++|..||..||+..+.++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 34557899999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred EecCC
Q 025976 127 VVGTN 131 (245)
Q Consensus 127 ~a~~~ 131 (245)
+....
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 87654
No 42
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=5.8e-13 Score=96.21 Aligned_cols=83 Identities=25% Similarity=0.337 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
+++....|||.|||+.+|.+++.+||..||.|..|+|-..+ ..+|.|||.|++..+|.+|++.|++..++++.|.|-+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34566889999999999999999999999999999887766 3478999999999999999999999999999999998
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
-++..
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 77654
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=7.2e-13 Score=123.35 Aligned_cols=79 Identities=30% Similarity=0.360 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.++++|||+||++ .+++++|+++|+.||.|..|+|+.++ +|||||+|.+.++|+.||..||+..|.|+.|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 4678999999998 69999999999999999999998764 689999999999999999999999999999999998
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
+...
T Consensus 349 ~~~~ 352 (481)
T TIGR01649 349 KQQN 352 (481)
T ss_pred cccc
Confidence 7653
No 44
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-13 Score=112.22 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++|||++|..+++|.-|...|-.||.|+.|.|..|. +.+++||+||+|...|+|.+||..||..+|.|+.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 55899999999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 865
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=9.2e-13 Score=122.63 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh--CCceeCCceeEEEEe
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIEVV 128 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l--~~~~l~g~~l~V~~a 128 (245)
++++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.| +...|.|+.|.|+++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 4689999999999999999999999999999999853 579999999999999999864 678999999999998
Q ss_pred cCC
Q 025976 129 GTN 131 (245)
Q Consensus 129 ~~~ 131 (245)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 46
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.4e-13 Score=111.51 Aligned_cols=83 Identities=22% Similarity=0.414 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...-.|||+.|...++-++|++.|.+||+|.+++|++|. |+++|||+||.|.+.++|+.||..||+..|..+.|+-.|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 334579999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
+.++
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 8776
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=3.5e-13 Score=118.91 Aligned_cols=84 Identities=29% Similarity=0.487 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC-ceeCC--ceeEEEEe
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDG--KPMKIEVV 128 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~-~~l~g--~~l~V~~a 128 (245)
..+|||+-|+..+||.+|+++|++||.|++|.|+++..+.++|||||.|.+.|.|..||+.||+ +++.| .+|.|.++
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 5789999999999999999999999999999999999999999999999999999999999998 55655 58999999
Q ss_pred cCCCCCC
Q 025976 129 GTNAEIP 135 (245)
Q Consensus 129 ~~~~~~~ 135 (245)
.+..++.
T Consensus 204 Dtqkdk~ 210 (510)
T KOG0144|consen 204 DTQKDKD 210 (510)
T ss_pred ccCCCch
Confidence 8877543
No 48
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=7e-13 Score=120.21 Aligned_cols=80 Identities=16% Similarity=0.446 Sum_probs=77.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
+.|||+|||+++++++|.++|+..|.|..++++.|+ +|.++||+||+|.+.++|+.|++.||+.++.+++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999999999999866
Q ss_pred C
Q 025976 132 A 132 (245)
Q Consensus 132 ~ 132 (245)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 5
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=8e-13 Score=116.66 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCce-eC--CceeEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVL-LD--GKPMKI 125 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~-l~--g~~l~V 125 (245)
...-+|||+.||..++|.||+++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+..||+.+ |- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 345679999999999999999999999999999999999 99999999999999999999999998844 43 567888
Q ss_pred EEecCCCCC
Q 025976 126 EVVGTNAEI 134 (245)
Q Consensus 126 ~~a~~~~~~ 134 (245)
.++..+.+.
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 888766543
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=3.2e-13 Score=112.78 Aligned_cols=83 Identities=16% Similarity=0.297 Sum_probs=80.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
+.+|.|||-.||.+..+.+|..+|-.||.|++.++..|+ |+.+|+|+||.|.++.+|+.||..||++.|.-++|+|++.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 578999999999999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 8775
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3.1e-12 Score=115.89 Aligned_cols=84 Identities=32% Similarity=0.490 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHh-----CC-ceeCCce
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRY-----NN-VLLDGKP 122 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l-----~~-~~l~g~~ 122 (245)
.-..+|||.|||+++|+++|.++|++||+|.++.|+.++ |+.++|.|||.|.+..+|+.||... .+ +.|+|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 345899999999999999999999999999999999999 9999999999999999999999865 23 7789999
Q ss_pred eEEEEecCCCC
Q 025976 123 MKIEVVGTNAE 133 (245)
Q Consensus 123 l~V~~a~~~~~ 133 (245)
|+|.++-+..+
T Consensus 370 Lkv~~Av~Rke 380 (678)
T KOG0127|consen 370 LKVTLAVTRKE 380 (678)
T ss_pred EeeeeccchHH
Confidence 99999877653
No 52
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.35 E-value=8.4e-12 Score=112.64 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
...+|||.|||+++++++|+++|..||.|+...|..-. .++..+|+||+|.+.++++.||.. +-..|++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34559999999999999999999999999977666544 344448999999999999999976 6888999999999776
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
...
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 543
No 53
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=8.7e-12 Score=81.84 Aligned_cols=56 Identities=34% Similarity=0.535 Sum_probs=50.6
Q ss_pred HHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 69 IRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 69 L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
|.++|++||+|..|.+..+. .++|||+|.+.++|+.|++.||+..+.|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999988554 479999999999999999999999999999999986
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.3e-12 Score=111.32 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.++...|||.-|.+-++.++|+-+|+.||.|..|.|+.|. |+.+..||||+|.+.+++++|.-+|+++.|+++.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4667889999999999999999999999999999999999 999999999999999999999999999999999999998
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
++.-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 76544
No 55
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.31 E-value=1.3e-11 Score=115.81 Aligned_cols=75 Identities=32% Similarity=0.483 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
.++||||+.|+..++|.||..+|+.||+|.+|.|+ .+++||||.+.+..+|++|+.+|.++.+..+.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 46899999999999999999999999999999998 5578999999999999999999999999999999998753
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1e-11 Score=112.58 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
+...|.|.||||.+...+|+.+|+.||.|..|.|+....+..+|||||.|....+|..||+.+|+++|+|++|-|.||-+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 46889999999999999999999999999999999777777779999999999999999999999999999999999976
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
..
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 65
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2.1e-12 Score=112.03 Aligned_cols=76 Identities=28% Similarity=0.457 Sum_probs=73.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
-|+|||+.|.+++.|+.|+..|..||+|++|.|..|+ |++++|||||+|+-+|.|+.|++.||+..+.|+.|+|-.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 4899999999999999999999999999999999999 999999999999999999999999999999999999874
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.28 E-value=5.8e-12 Score=114.26 Aligned_cols=79 Identities=32% Similarity=0.561 Sum_probs=75.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
.|||+||++++++++|+.+|+.||.|..|.++.|. ||.++||+||+|.+.++|.+|++.||+++|-|+.|+|.+.....
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 39999999999999999999999999999999998 99999999999999999999999999999999999998876654
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2.2e-11 Score=83.77 Aligned_cols=60 Identities=27% Similarity=0.474 Sum_probs=53.9
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeeCC-C--CCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 66 NDDIRELFS----EIGELKRYA-IHFDK-N--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 66 e~~L~~~F~----~~G~i~~v~-i~~~~-t--g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
+++|+++|+ .||.|.+|. |..++ + +.++||+||+|.+.++|.+|+..||+..+.++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 66665 5 889999999999999999999999999999999876
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=6.2e-12 Score=106.19 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=68.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
.+|||+|||.++++.+|+.||++||+|.+|.|++ .|+||..++...++.||..||+.+|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec-------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4699999999999999999999999999999994 49999999999999999999999999999999988876
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=8.1e-11 Score=110.14 Aligned_cols=72 Identities=15% Similarity=0.327 Sum_probs=60.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC------------CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEI------------GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~------------G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
..++|||+|||+.+|+++|.++|.+| ..|..|.+. ..++||||+|.+.++|..|| .|+++.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 45789999999999999999999875 233444443 45789999999999999999 5999999
Q ss_pred CCceeEEEEe
Q 025976 119 DGKPMKIEVV 128 (245)
Q Consensus 119 ~g~~l~V~~a 128 (245)
.++.|+|...
T Consensus 248 ~g~~l~v~r~ 257 (509)
T TIGR01642 248 SNVFLKIRRP 257 (509)
T ss_pred eCceeEecCc
Confidence 9999998744
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=3.1e-11 Score=102.00 Aligned_cols=77 Identities=29% Similarity=0.438 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
....++|+|+||.+.++.++|++.|++||.|.++.|+ ++|+||.|.-.++|..||..|++.+++|++|+|+++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4577899999999999999999999999999999999 459999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
+.+.
T Consensus 148 tsrl 151 (346)
T KOG0109|consen 148 TSRL 151 (346)
T ss_pred cccc
Confidence 8765
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=94.24 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEI-GELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
......-+||..||..+.+.+|..+|.+| |.|..+++-+++ ||.++|||||+|++++.|+-|.+.||++.|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44555678999999999999999999988 777788887888 9999999999999999999999999999999999999
Q ss_pred EEecCC
Q 025976 126 EVVGTN 131 (245)
Q Consensus 126 ~~a~~~ 131 (245)
++..+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 988776
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.15 E-value=1.5e-10 Score=94.90 Aligned_cols=84 Identities=27% Similarity=0.514 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHH----HhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRE----LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 123 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l 123 (245)
...+..||||.||+..+..++|+. ||++||.|..|... ++.+.+|-|||.|.+.+.|..|+..|+++.+.|+++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 345566999999999999999887 99999999977665 455788999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 025976 124 KIEVVGTNAE 133 (245)
Q Consensus 124 ~V~~a~~~~~ 133 (245)
+|++|+.+..
T Consensus 83 riqyA~s~sd 92 (221)
T KOG4206|consen 83 RIQYAKSDSD 92 (221)
T ss_pred heecccCccc
Confidence 9999987764
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.5e-10 Score=103.96 Aligned_cols=78 Identities=26% Similarity=0.488 Sum_probs=73.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCCC
Q 025976 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 133 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~~ 133 (245)
.|||.||++.++..+|.++|+.||.|.+|+|..+..| ++|| ||+|+++++|++||+.||+..+.++.|.|-+......
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 3999999999999999999999999999999999988 8999 9999999999999999999999999999988766553
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.13 E-value=1.2e-10 Score=92.42 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
..+.+..|||+||.++++|..|.++|+.||.+.. -+|+++. |+.+++|+||.|.+.|.+.+||..+|+..+..+++.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 4566789999999999999999999999998874 5788888 8999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++..+.
T Consensus 172 ~ya~k~~ 178 (203)
T KOG0131|consen 172 SYAFKKD 178 (203)
T ss_pred EEEEecC
Confidence 9997665
No 67
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=3.1e-10 Score=98.08 Aligned_cols=81 Identities=26% Similarity=0.343 Sum_probs=71.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh-CCceeCCcee
Q 025976 45 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPM 123 (245)
Q Consensus 45 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l-~~~~l~g~~l 123 (245)
.+|.+..-++|||++|...++|.+|+++|.+||+|..|.+... +++|||+|.+.+.|+.|.+++ +...|+|..|
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3456667789999999999999999999999999999999854 569999999999999998765 5577899999
Q ss_pred EEEEecC
Q 025976 124 KIEVVGT 130 (245)
Q Consensus 124 ~V~~a~~ 130 (245)
+|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999987
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.08 E-value=2.8e-10 Score=103.78 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
-++.|||.+|...+-..+|+.||++||.|+-.+|+.+. +--.++|+||++.+.++|.+||+.||.+.|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999999887 66678999999999999999999999999999999999988
Q ss_pred CCCC
Q 025976 130 TNAE 133 (245)
Q Consensus 130 ~~~~ 133 (245)
..+.
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 7663
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=5.2e-10 Score=100.48 Aligned_cols=76 Identities=30% Similarity=0.387 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
..|||+ +.+||.+|.++|+.+|+|.+|+|+.|. . +.|||||.|.++++|++||..||...|.|++|+|+|+..++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468998 899999999999999999999999999 5 99999999999999999999999999999999999998776
Q ss_pred C
Q 025976 133 E 133 (245)
Q Consensus 133 ~ 133 (245)
.
T Consensus 77 ~ 77 (369)
T KOG0123|consen 77 S 77 (369)
T ss_pred c
Confidence 4
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=4e-10 Score=94.36 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCce-eC--CceeEEEE
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL-LD--GKPMKIEV 127 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~-l~--g~~l~V~~ 127 (245)
..++|||+-|...-.|+|++.+|..||.|++|.+.....+.+||||||.|.+..+|+.||..||+.. +- ...|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999999843 43 35789999
Q ss_pred ecCCCC
Q 025976 128 VGTNAE 133 (245)
Q Consensus 128 a~~~~~ 133 (245)
+..+.+
T Consensus 98 ADTdkE 103 (371)
T KOG0146|consen 98 ADTDKE 103 (371)
T ss_pred ccchHH
Confidence 887764
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=5.3e-10 Score=99.20 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=69.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.|+|||.|||+++|++.|++-|..||.|.++.|+ ..++++| .|.|.++++|+.|+..|++..|+++.|+|.+
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh--ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34677999999999999999999999999999998884 3466675 9999999999999999999999999999987
Q ss_pred e
Q 025976 128 V 128 (245)
Q Consensus 128 a 128 (245)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.03 E-value=3.5e-10 Score=98.72 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++|||++|+|.++++.|++.|.+||+|..|.++.|+ ++.+++|+||+|.+++.+.++|. ...+.|+++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56899999999999999999999999999999999999 99999999999999998888885 46788999999999887
Q ss_pred CCCCCC
Q 025976 130 TNAEIP 135 (245)
Q Consensus 130 ~~~~~~ 135 (245)
+.....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 776443
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=8.3e-10 Score=103.02 Aligned_cols=79 Identities=32% Similarity=0.447 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCC----CCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG----RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg----~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..++|||.||++.+|.++|..+|...|.|..|.|...+.. .+.||+||+|.++++|+.|++.|+++.|+|+.|.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3344999999999999999999999999999888776633 345999999999999999999999999999999999
Q ss_pred Eec
Q 025976 127 VVG 129 (245)
Q Consensus 127 ~a~ 129 (245)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 988
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=7.2e-10 Score=96.43 Aligned_cols=82 Identities=20% Similarity=0.339 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
.-.+|||..++++++|+||+.+|+.||+|++|.+-.++ .+.++||+||+|.+..+...||..||-+.|.|+.|+|-.+-
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 45789999999999999999999999999999999999 67899999999999999999999999999999999998665
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
..+
T Consensus 289 TPP 291 (544)
T KOG0124|consen 289 TPP 291 (544)
T ss_pred CCC
Confidence 444
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=3.9e-10 Score=105.18 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...+.|+|.|||+.++-.+|+.||..||.|..|.|+.-. .+.++|||||+|-++.+|..|+..|..+.|.|+.|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 346789999999999999999999999999999998775 6678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 025976 129 GTNAE 133 (245)
Q Consensus 129 ~~~~~ 133 (245)
+....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 88763
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=2.2e-10 Score=93.40 Aligned_cols=92 Identities=22% Similarity=0.271 Sum_probs=81.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
++.+...||||.||...|+|+.|.++|-+.|+|.+|.|..++.++.+ ||||+|.++..+.-|++.+|+..+.+..|.|.
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 44556789999999999999999999999999999999999988888 99999999999999999999999999999999
Q ss_pred EecCCCCCCcccc
Q 025976 127 VVGTNAEIPLQAR 139 (245)
Q Consensus 127 ~a~~~~~~~~~~r 139 (245)
+-......+.-++
T Consensus 83 ~r~G~shapld~r 95 (267)
T KOG4454|consen 83 LRCGNSHAPLDER 95 (267)
T ss_pred cccCCCcchhhhh
Confidence 8776654444343
No 77
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.99 E-value=1.7e-09 Score=93.56 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
...++.|||.|||.++|.+++.++|++||.|. .|+|..+..|+.+|-|+|.|...++++.||..|+...|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45678899999999999999999999999875 3788889899999999999999999999999999999999
Q ss_pred ceeEEEEecCC
Q 025976 121 KPMKIEVVGTN 131 (245)
Q Consensus 121 ~~l~V~~a~~~ 131 (245)
+.|+|+.|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999987644
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.87 E-value=3.3e-09 Score=92.67 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++|||++||..+++++|+++|.+||.|..+.++.|. +...++|+||+|.+++.+++++. .+-+.|+++.|.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999999999 88999999999999999998884 58899999999999998
Q ss_pred CCCCCC
Q 025976 130 TNAEIP 135 (245)
Q Consensus 130 ~~~~~~ 135 (245)
++....
T Consensus 175 pk~~~~ 180 (311)
T KOG4205|consen 175 PKEVMQ 180 (311)
T ss_pred chhhcc
Confidence 877543
No 79
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=98.83 E-value=1.3e-08 Score=70.51 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.5
Q ss_pred CCCCChHhHHHHHHHHHHhhh
Q 025976 223 PVDKSADDLDKELDNYHAEAM 243 (245)
Q Consensus 223 ~~~~~~~~~d~~l~~~~~~~~ 243 (245)
++++|+||||+|||+||+.+.
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~~ 57 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKTK 57 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 678999999999999997653
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.83 E-value=3.1e-08 Score=81.19 Aligned_cols=83 Identities=23% Similarity=0.329 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC--CCCCceEEEEEEccHHHHHHHHHHhCCceeC---CceeEE
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMKI 125 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~---g~~l~V 125 (245)
.-+||||.+||.++..-+|..||..|--.+.+.|.... ...++-++||+|.+..+|++|+..||++.++ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 45899999999999999999999988656655555443 3345679999999999999999999999986 678999
Q ss_pred EEecCCCC
Q 025976 126 EVVGTNAE 133 (245)
Q Consensus 126 ~~a~~~~~ 133 (245)
++++.+..
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99998763
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.82 E-value=7e-09 Score=87.32 Aligned_cols=82 Identities=24% Similarity=0.294 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
....+.|||+|+.+.+|.++|..+|+.||.|..|.|..++ .+++++|+||+|.+.+.++.++. |++..|.+..+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456889999999999999999999999999999999999 77899999999999999999997 999999999999998
Q ss_pred ecCC
Q 025976 128 VGTN 131 (245)
Q Consensus 128 a~~~ 131 (245)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8765
No 82
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.82 E-value=2.2e-08 Score=87.20 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 119 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~ 119 (245)
.....+|||.+||..+++++|.++|.+|+.|+ .|.|.+++ |+..|+-|.|.|.+...|++||..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999885 36778888 9999999999999999999999999999999
Q ss_pred CceeEEEEecCCCC
Q 025976 120 GKPMKIEVVGTNAE 133 (245)
Q Consensus 120 g~~l~V~~a~~~~~ 133 (245)
+..|+|.++...+.
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998876653
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.81 E-value=3.7e-08 Score=71.68 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=67.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhc--CCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeC----CceeEE
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSE--IGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD----GKPMKI 125 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~----g~~l~V 125 (245)
+||.|.|||...|.++|.+++.. .|....+.|+.|- +..+.|||||.|.+++.|..-.+.+++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 78999999999999999988854 3667778888887 8889999999999999999999999998885 556777
Q ss_pred EEecC
Q 025976 126 EVVGT 130 (245)
Q Consensus 126 ~~a~~ 130 (245)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77754
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=5.3e-09 Score=86.38 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=66.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
..|||++||+.+.+.+|+.||..||.|..|.|. .+|+||+|.+..+|+.||..||+..|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999887 579999999999999999999999999999888887643
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.60 E-value=6.4e-08 Score=80.74 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=81.0
Q ss_pred CCCCCcchhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHH
Q 025976 29 NFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAF 107 (245)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~ 107 (245)
-..|.+....+|. +...+||.+.|..+++++.|...|.+|=.....++++++ |++++||+||.|.+++++.
T Consensus 175 gtswedPsl~ew~--------~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 175 GTSWEDPSLAEWD--------EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred ccccCCcccccCc--------cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 4456665555554 355889999999999999999999999888888999999 9999999999999999999
Q ss_pred HHHHHhCCceeCCceeEEEEecC
Q 025976 108 AALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 108 ~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
.|+.+|++..++.++|++.-...
T Consensus 247 rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred HHHHhhcccccccchhHhhhhhH
Confidence 99999999999999988765443
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=5.1e-08 Score=89.10 Aligned_cols=72 Identities=31% Similarity=0.315 Sum_probs=64.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
..+..+|+|-|||..|++++|..+|+.||+|..|+....+ .+.+||+|.+.-+|+.|++.|+...|.++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456789999999999999999999999999987665543 57899999999999999999999999999887
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.56 E-value=2.8e-07 Score=83.27 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
....-|.+.+|||++|+++|.++|+.|+ |.++.+.. .+|+..|-|||+|.+.|++++|++ ++...+..+.|.|-.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 4557788999999999999999999995 88743332 268899999999999999999996 48888899999998775
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
...
T Consensus 85 ~~e 87 (510)
T KOG4211|consen 85 GAE 87 (510)
T ss_pred Ccc
Confidence 443
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=1.9e-07 Score=87.47 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCC----CCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN----GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~t----g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
++..+.|||+||++.+++++|...|..||+|..|+|+..++ ....-|+||.|-+..+|++|++.|++..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 56678899999999999999999999999999999998773 34456899999999999999999999999999999
Q ss_pred EEEecCCC
Q 025976 125 IEVVGTNA 132 (245)
Q Consensus 125 V~~a~~~~ 132 (245)
+-|.++-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986543
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.50 E-value=5.3e-07 Score=79.83 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=70.8
Q ss_pred CCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 52 GTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 52 ~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
.+.|.|.||..+ +|.+-|..+|..||+|.+|+|++++. -.|+|.|.+...|+.|++.|+++.|.|++|+|.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 688899999765 89999999999999999999998872 3699999999999999999999999999999999987
Q ss_pred CCC
Q 025976 131 NAE 133 (245)
Q Consensus 131 ~~~ 133 (245)
...
T Consensus 373 ~~v 375 (492)
T KOG1190|consen 373 TNV 375 (492)
T ss_pred ccc
Confidence 653
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=2.2e-07 Score=85.42 Aligned_cols=86 Identities=24% Similarity=0.319 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.......|||++||..+++.++.+++..||.++...++.+. ++.+++|||.+|.++.....|+..||+..+.++.|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34566889999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 025976 127 VVGTNAE 133 (245)
Q Consensus 127 ~a~~~~~ 133 (245)
.+.....
T Consensus 365 ~A~~g~~ 371 (500)
T KOG0120|consen 365 RAIVGAS 371 (500)
T ss_pred hhhccch
Confidence 8877653
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.39 E-value=9.6e-07 Score=79.86 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.....|.+.+||+.||++||.++|+-.-.|.. |.|+.+..+.+.|-|||.|++.+.|+.|+.. |...|..+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 45678999999999999999999998844444 5566677788999999999999999999975 788899999998765
Q ss_pred c
Q 025976 129 G 129 (245)
Q Consensus 129 ~ 129 (245)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.32 E-value=3.4e-07 Score=83.67 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
....+||+..|...+++-+|.++|+.+|.|..|.|+.|+ +..++|.|||+|.+.+.+..|| .|.+..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 345789999999999999999999999999999999999 8999999999999999999999 68999999999999876
Q ss_pred cCC
Q 025976 129 GTN 131 (245)
Q Consensus 129 ~~~ 131 (245)
...
T Consensus 256 Eae 258 (549)
T KOG0147|consen 256 EAE 258 (549)
T ss_pred HHH
Confidence 543
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.31 E-value=1.7e-06 Score=64.23 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=47.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC-----ceeCCceeEEE
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-----VLLDGKPMKIE 126 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~-----~~l~g~~l~V~ 126 (245)
++.|+|.+++..++.++|+++|+.|+.|..|.+.... -.|||-|.+++.|+.|+..+.. ..|.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4679999999999999999999999999998887543 3699999999999999987644 46777777777
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
+.....
T Consensus 76 vLeGee 81 (105)
T PF08777_consen 76 VLEGEE 81 (105)
T ss_dssp ---HHH
T ss_pred ECCCHH
Confidence 655433
No 94
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.20 E-value=3.1e-06 Score=73.71 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...+||+||-|++|++||.+.+...| .+.++++..++ +|++||||+|...+....++.++.|...+|.|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35689999999999999998887666 44567777788 8999999999999999999999999999999997776544
Q ss_pred c
Q 025976 129 G 129 (245)
Q Consensus 129 ~ 129 (245)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.13 E-value=3.5e-06 Score=69.36 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=54.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
......||||-||..+++|++|+.+|+.|--...++| ..+.|. ..|||+|++.+.|..||..|.+..|
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~-~~~~g~--~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKI-RARGGM--PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEE-ecCCCc--ceEeecHHHHHHHHHHHHHhhccee
Confidence 3455678999999999999999999999965554444 333443 4799999999999999999988765
No 96
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.13 E-value=9.3e-06 Score=76.31 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=69.3
Q ss_pred CCC-EEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 51 VGT-KLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 51 ~~~-~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
+++ .|-+.|+|++++.+||.++|..|-.+- +|.+.++..|...|-|.|.|++.++|.+|+..|++.+|..+.|.|.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344 788999999999999999999996554 78888888999999999999999999999999999999999998875
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=1.8e-06 Score=71.51 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=62.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.|+|.+|+..+.+.+|.++|..+|++..+.+. .+++||+|.+.++|..||..|++..+.++.|.+..
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 356889999999999999999999999998654443 46899999999999999999999999999999943
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.09 E-value=1.6e-05 Score=65.58 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~-g~~l~V~ 126 (245)
...+..+||+.|||.+++.+.|..+|.+|.-.+.|.++... .+.|||+|.+...|..|...|.+..|- ...+.|.
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 35678899999999999999999999999989999888654 468999999999999999999998876 6677777
Q ss_pred Eec
Q 025976 127 VVG 129 (245)
Q Consensus 127 ~a~ 129 (245)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 653
No 99
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.06 E-value=2.4e-05 Score=54.89 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=47.7
Q ss_pred CEEEEcCCCCCCcHHH----HHHHhhcCC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 53 TKLYVSNLHPGVTNDD----IRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~----L~~~F~~~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
+.|+|.|||.+.+... |+.|+..|| .|..| . .+.|+|.|.+.+.|.+|.+.|++..+-|..|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4689999999887765 566777886 44443 2 35799999999999999999999999999999998
Q ss_pred ecCC
Q 025976 128 VGTN 131 (245)
Q Consensus 128 a~~~ 131 (245)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 7543
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.86 E-value=2.4e-05 Score=69.01 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eeE--EEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKR--YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~--v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.+...|.+.+||++++.++|.++|..|-. |.. |.|..+-.|.+.|-|||+|.+.|.|.+|....+++..+.+.|+|.
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 33567999999999999999999988854 333 889999999999999999999999999999988888888888887
Q ss_pred EecCC
Q 025976 127 VVGTN 131 (245)
Q Consensus 127 ~a~~~ 131 (245)
.+..+
T Consensus 358 p~S~e 362 (508)
T KOG1365|consen 358 PCSVE 362 (508)
T ss_pred eccHH
Confidence 65543
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.84 E-value=1.1e-05 Score=70.32 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=70.8
Q ss_pred CCEEE-EcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 52 GTKLY-VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 52 ~~~l~-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++| |.+|++.+++++|+.+|..++.|..+.+..++ ++.+++|+||.|.+...+..++.. +...+.+.++.|....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34455 99999999999999999999999999999988 999999999999999999999876 7788889999988776
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 553
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.81 E-value=0.00014 Score=64.17 Aligned_cols=84 Identities=26% Similarity=0.300 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+++.+.|.+|... ++-+.|..+|-.||.|.+|++++.+. |.|.|++.+..+.++||..||+..+-|.+|.|.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 3467889999999876 55677999999999999999998774 569999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 025976 127 VVGTNAEIP 135 (245)
Q Consensus 127 ~a~~~~~~~ 135 (245)
+++.....+
T Consensus 359 ~SkQ~~v~~ 367 (494)
T KOG1456|consen 359 VSKQNFVSP 367 (494)
T ss_pred ecccccccc
Confidence 998776433
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.81 E-value=1.6e-05 Score=71.02 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=60.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeC---C---CCC--------CceEEEEEEccHHHHHHHHHHhCCc
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD---K---NGR--------PSGSAEVVYARRSDAFAALKRYNNV 116 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~---tg~--------~~G~afV~F~~~e~a~~Ai~~l~~~ 116 (245)
++++|.+.|||.+-.-+.|.+||..||.|+.|+|+.. + .+. .+-+|||+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 7899999999999888999999999999999999876 2 111 2457999999999999999988664
Q ss_pred eeCCceeEEE
Q 025976 117 LLDGKPMKIE 126 (245)
Q Consensus 117 ~l~g~~l~V~ 126 (245)
...-.-|+|.
T Consensus 310 ~~wr~glkvk 319 (484)
T KOG1855|consen 310 QNWRMGLKVK 319 (484)
T ss_pred hhhhhcchhh
Confidence 4433334433
No 104
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.79 E-value=0.00014 Score=63.41 Aligned_cols=81 Identities=12% Similarity=0.288 Sum_probs=64.3
Q ss_pred CCCCCCEEEEcCCC----CCCcH-------HHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCc
Q 025976 48 GIEVGTKLYVSNLH----PGVTN-------DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 116 (245)
Q Consensus 48 ~~~~~~~l~V~nLp----~~~te-------~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~ 116 (245)
-....++|.|.||- +..+. ++|.+-.++||.|.+|.|.-. ++.|.+-|.|.+.++|+.||+.|++.
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCe
Confidence 34566899999983 22342 345566789999999877633 66789999999999999999999999
Q ss_pred eeCCceeEEEEecCC
Q 025976 117 LLDGKPMKIEVVGTN 131 (245)
Q Consensus 117 ~l~g~~l~V~~a~~~ 131 (245)
.++++.|..++....
T Consensus 338 ~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 338 WFDGRQLTASIWDGK 352 (382)
T ss_pred eecceEEEEEEeCCc
Confidence 999999998876543
No 105
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00015 Score=67.02 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=64.3
Q ss_pred CCCCEEEEcCCCCCCcH------HHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-Cce
Q 025976 50 EVGTKLYVSNLHPGVTN------DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKP 122 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te------~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~-g~~ 122 (245)
.-...|+|.|+|---.. .-|..+|+++|+|..+.+..+..+..+||.|++|.+..+|+.|++.||++.|+ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 44577999999854222 23678899999999999998986679999999999999999999999998886 556
Q ss_pred eEEEEe
Q 025976 123 MKIEVV 128 (245)
Q Consensus 123 l~V~~a 128 (245)
+.|.+.
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 666543
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.74 E-value=6.8e-05 Score=65.24 Aligned_cols=80 Identities=21% Similarity=0.439 Sum_probs=61.7
Q ss_pred CCCEEEEcCCCCCCcHHH----H--HHHhhcCCCeeEEEEeeCC-C-CCCceE--EEEEEccHHHHHHHHHHhCCceeCC
Q 025976 51 VGTKLYVSNLHPGVTNDD----I--RELFSEIGELKRYAIHFDK-N-GRPSGS--AEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~----L--~~~F~~~G~i~~v~i~~~~-t-g~~~G~--afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
+..-|||-+|++.+..++ | .++|.+||.|..|.|.... + ....+. .||+|.+.|+|..||...++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 445689999988876655 3 4789999999988776543 1 111122 4999999999999999999999999
Q ss_pred ceeEEEEecC
Q 025976 121 KPMKIEVVGT 130 (245)
Q Consensus 121 ~~l~V~~a~~ 130 (245)
+.|+..+-..
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999876544
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=0.0002 Score=57.49 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=60.1
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 46 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
+|.......|.|.+||+..+++||++++.+.|.|....+..| |++.|+|...|+.+-||.+|+...+..
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccC
Confidence 344556678999999999999999999999999998888876 589999999999999999998876643
No 108
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.68 E-value=0.00012 Score=65.31 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc-eeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~-~l~V~~a 128 (245)
+++.+|.+.|||+.++|++|+++|..-|-..+......+ .+-+|++.+.+.|+|..|+..+|.+.+... .|+|.++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k---d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK---DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC---CcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 567899999999999999999999988876654444332 234899999999999999999999999755 8899988
Q ss_pred cCC
Q 025976 129 GTN 131 (245)
Q Consensus 129 ~~~ 131 (245)
+..
T Consensus 489 ks~ 491 (492)
T KOG1190|consen 489 KST 491 (492)
T ss_pred ccc
Confidence 753
No 109
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.61 E-value=6.3e-05 Score=63.14 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=60.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-C--------CCCce----EEEEEEccHHHHHHHHHHhCCcee
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N--------GRPSG----SAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-t--------g~~~G----~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
.-.||+++||+.+...-|++||+.||.|-.|.|.... + +.+.. -+.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3579999999999999999999999999999887765 3 22222 246999999999999999999999
Q ss_pred CCce
Q 025976 119 DGKP 122 (245)
Q Consensus 119 ~g~~ 122 (245)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8874
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00022 Score=65.27 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHH
Q 025976 45 GISGIEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKR 112 (245)
Q Consensus 45 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~ 112 (245)
.....++.+||||++||--++.++|..+|+ .||.|..|-|-.|+ -+.++|-+=|+|.+..+-.+||..
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 556788999999999999999999999998 89999999999995 788999999999999999999963
No 111
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.57 E-value=0.00021 Score=46.16 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=41.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHH
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 110 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai 110 (245)
+.|-|.+.++...+ +|...|.+||+|..+.+. ...-+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 56888999876654 455588999999987776 22348999999999999985
No 112
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.57 E-value=4.5e-05 Score=64.05 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=55.1
Q ss_pred HHHHHHhh-cCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 67 DDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 67 ~~L~~~F~-~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
++|...|+ +||+|+++.|..+-.-+-.|-+||.|...++|++|++.||+-.+.|++|..++.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 34444445 8999999888776655678899999999999999999999999999999999876554
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.50 E-value=0.00081 Score=59.43 Aligned_cols=86 Identities=21% Similarity=0.153 Sum_probs=66.6
Q ss_pred hcCCCCCCCCCEEEEcCC--CCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 43 AAGISGIEVGTKLYVSNL--HPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 43 ~~~~~~~~~~~~l~V~nL--p~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
..+.....+.+.|.+.=| -+.+|.+-|..+....|+|.+|.|... ++ --|.|||++.+.|++|...||+..|..
T Consensus 111 R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 111 RPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred cCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccc
Confidence 334444556666665544 456888999999999999999877643 33 369999999999999999999988753
Q ss_pred --ceeEEEEecCCC
Q 025976 121 --KPMKIEVVGTNA 132 (245)
Q Consensus 121 --~~l~V~~a~~~~ 132 (245)
..|+|++|++..
T Consensus 187 GCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 187 GCCTLKIEYAKPTR 200 (494)
T ss_pred cceeEEEEecCcce
Confidence 578999998765
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.00046 Score=63.91 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=53.3
Q ss_pred HHHHHhhcCCCeeEEEEeeC-CC---CCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 68 DIRELFSEIGELKRYAIHFD-KN---GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 68 ~L~~~F~~~G~i~~v~i~~~-~t---g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
+|+.-++.||.|..|.|..+ .. ....|..||+|.+.+++++|++.|++.++.++.|...|....
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 34455688999999999887 32 344677999999999999999999999999999999887654
No 115
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.34 E-value=0.00018 Score=66.87 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=65.1
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee---CCce
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL---DGKP 122 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l---~g~~ 122 (245)
+....+..|||.||-.-.|.-+|+.|+. .+|.|....|- +.+-.|||.|.+.++|.+.+..||++.| +.+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456778999999998899999999998 66766665332 2345799999999999999999999887 5678
Q ss_pred eEEEEecCCC
Q 025976 123 MKIEVVGTNA 132 (245)
Q Consensus 123 l~V~~a~~~~ 132 (245)
|.|.|.....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 8888876544
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.30 E-value=0.0016 Score=50.63 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCCC
Q 025976 68 DIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 133 (245)
Q Consensus 68 ~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~~ 133 (245)
+|.+.|..||+|.-|++.-+ .-+|+|.+-+.|.+|+ .|++.+|+|+.|+|.+..+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccHH
Confidence 56777899999998888743 4899999999999999 5799999999999999988764
No 117
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.23 E-value=0.00066 Score=60.29 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=61.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC----CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK----NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~----tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..|.|.||.+.+|.++++.||...|.|..+.|+.+. -....-.|||.|.+...+..|. .|.++++-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 489999999999999999999999999999888754 1233458999999998888777 57777777776666544
Q ss_pred c
Q 025976 129 G 129 (245)
Q Consensus 129 ~ 129 (245)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.19 E-value=0.00049 Score=60.97 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEI----GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..-.|.+.+||+++++.|+.++|..- +.++.|.++...+++..|-|||.|..+++|+.|+.+ |...|.-+.|++.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 34678889999999999999999622 234566666666899999999999999999999976 6666766666654
Q ss_pred Ee
Q 025976 127 VV 128 (245)
Q Consensus 127 ~a 128 (245)
.+
T Consensus 239 RS 240 (508)
T KOG1365|consen 239 RS 240 (508)
T ss_pred HH
Confidence 33
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.00015 Score=69.74 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
....|+|.|+|+..|.+.|+.+|+.+|.+..+.++..+.|+++|.|||.|.++.++..++...+...+.-..+.|.+..+
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 35789999999999999999999999999999999999999999999999999999999988777777777888887666
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
..
T Consensus 815 ~~ 816 (881)
T KOG0128|consen 815 ER 816 (881)
T ss_pred cc
Confidence 43
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0018 Score=59.47 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=48.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEee--CC--CCCCce---EEEEEEccHHHHHHHHHHh
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHF--DK--NGRPSG---SAEVVYARRSDAFAALKRY 113 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~--tg~~~G---~afV~F~~~e~a~~Ai~~l 113 (245)
.-+++|||++||+.++|+.|...|..||.+. |.... .. --.++| |+|+.|+++..+..-|...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 4468899999999999999999999999865 44442 11 224567 9999999998877666543
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.12 E-value=0.00033 Score=66.25 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=66.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
-..+..|||..||..+++.++.++|...-.|++ |.|.+.+++.-.+.|||+|.+++++..|+..-+.+.+..+.|+|.-
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 456678999999999999999999987666765 7777777888899999999999888888877777778888888863
No 122
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.11 E-value=0.0025 Score=46.68 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=50.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEE-EeeC-------CCCCCceEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFD-------KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 123 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~-------~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l 123 (245)
.+.|.|=+.|+. ....|.++|++||.|.+.. +..+ +.-....+..|.|.++.+|++||. .|+..|.+..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 355778888887 4577888999999998653 1111 111234589999999999999996 49999988654
Q ss_pred -EEEEec
Q 025976 124 -KIEVVG 129 (245)
Q Consensus 124 -~V~~a~ 129 (245)
-|.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 466664
No 123
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.76 E-value=0.0017 Score=54.67 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=62.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCc----eeCCceeEEEEe
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV----LLDGKPMKIEVV 128 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~----~l~g~~l~V~~a 128 (245)
..|||.||...++-+.|...|+.||+|....++.|..++..+-.+|+|...-.|.+|+..++.- +..+.++-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 7899999999999999999999999999888888887888888999999999999999877432 234445555443
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=8.7e-05 Score=71.40 Aligned_cols=67 Identities=30% Similarity=0.432 Sum_probs=58.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 119 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~ 119 (245)
.++||.||+..+.+.+|...|..++.|..|.+.... .+..+|+|||+|..++++.+||.....+.+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 678999999999999999999999988887777555 7889999999999999999999765555554
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.72 E-value=0.0098 Score=39.55 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=44.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcC---CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEI---GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 113 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~---G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l 113 (245)
.+|+|.+|. +++.++|+.+|..| .....|..+-|. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 579999996 47889999999988 124578888774 4899999999999999764
No 126
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=96.72 E-value=0.0037 Score=43.23 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.1
Q ss_pred CCChHhHHHHHHHHHHhhh
Q 025976 225 DKSADDLDKELDNYHAEAM 243 (245)
Q Consensus 225 ~~~~~~~d~~l~~~~~~~~ 243 (245)
+.+...||.|||+||+++-
T Consensus 54 ~~~~~~LD~~Ld~Y~~~~~ 72 (74)
T PF13865_consen 54 SKTKSKLDAELDSYMSKKD 72 (74)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 4568889999999999864
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.70 E-value=0.003 Score=61.43 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=68.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC--ceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g--~~l~V 125 (245)
.....+.+||++|..++....|...|..||.|..|.+-. ..-||+|.|++...++.|+..|.+..|.+ +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 445678899999999999999999999999999877763 24599999999999999999999999974 67888
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++....
T Consensus 526 dla~~~~ 532 (975)
T KOG0112|consen 526 DLASPPG 532 (975)
T ss_pred ccccCCC
Confidence 8887654
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.68 E-value=0.0059 Score=52.49 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=51.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCC--CCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 67 DDIRELFSEIGELKRYAIHFDKNG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 67 ~~L~~~F~~~G~i~~v~i~~~~tg--~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
+++++.+.+||.|..|.|..+++- .-.--.||+|...++|.+|+-.||+..|.|+.+...+...
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 457778899999999988877621 1122479999999999999999999999999998776543
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.34 E-value=0.02 Score=40.30 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=41.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 115 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~ 115 (245)
....+|. +|.+....||.+||+.||.|. |..+.|. .|||...+.+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhcc
Confidence 3455565 999999999999999999875 5566443 699999999999999988754
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.23 E-value=0.01 Score=48.08 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc-CCCe---eEEEEeeCC--C-CCCceEEEEEEccHHHHHHHHHHhCCceeCCc--
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSE-IGEL---KRYAIHFDK--N-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-- 121 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~~~--t-g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~-- 121 (245)
...+|.|.+||+++|++++.+.++. ++.. ..+.-.... . -....-|||.|.+.+++...+..++++.+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 5578999999999999999987766 5544 344322332 1 12234699999999999999999999777543
Q ss_pred ---eeEEEEecC
Q 025976 122 ---PMKIEVVGT 130 (245)
Q Consensus 122 ---~l~V~~a~~ 130 (245)
...|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 345555543
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.20 E-value=0.0045 Score=55.67 Aligned_cols=73 Identities=29% Similarity=0.380 Sum_probs=57.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC-ceeCCceeEEEEec
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDGKPMKIEVVG 129 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~-~~l~g~~l~V~~a~ 129 (245)
..|||+||.+.++..+|..+|... +--..+ |+ ..+|+||.+.+...|.+|++.|++ .++.|+++.|+..-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999654 111122 22 257999999999999999999988 67899999988765
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 75 ~kk 77 (584)
T KOG2193|consen 75 PKK 77 (584)
T ss_pred hHH
Confidence 543
No 132
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.91 E-value=0.014 Score=54.32 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=57.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhh--cCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCceeEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFS--EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKI 125 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~--~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~--~~l~g~~l~V 125 (245)
.+-|.|.|..||.++-+++|+.||. .|=.+.+|.+-.+. -=||+|++..+|+.|.+.|.. .+|.+++|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4558889999999999999999996 46677777776543 359999999999999987754 5677877655
Q ss_pred EE
Q 025976 126 EV 127 (245)
Q Consensus 126 ~~ 127 (245)
.|
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 44
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.85 E-value=0.0034 Score=54.89 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=60.5
Q ss_pred CEEEEcCCCCCCcHH-HHH--HHhhcCCCeeEEEEeeCCC----CCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 53 TKLYVSNLHPGVTND-DIR--ELFSEIGELKRYAIHFDKN----GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 53 ~~l~V~nLp~~~te~-~L~--~~F~~~G~i~~v~i~~~~t----g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
.-+||-+|+..+..+ .|+ +.|.+||.|..|.+..+.+ -....-++|+|...++|..||...+++.++++.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888776544 454 6799999999988877652 112234899999999999999999999999998777
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.+.....
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 6655443
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.61 E-value=0.0041 Score=60.59 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
....+||++||+..+++.+|+..|..+|.|..|.|....-+.-.-|+||.|.+...+-.|+..+.+..|..-.+++-+-
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4568999999999999999999999999999999987763344458999999999999998888887776555555544
No 135
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.60 E-value=0.27 Score=47.71 Aligned_cols=67 Identities=13% Similarity=0.294 Sum_probs=49.4
Q ss_pred EEEEcCC--CCCCcHHHHHHHhhcCCCee-----EEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 54 KLYVSNL--HPGVTNDDIRELFSEIGELK-----RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 54 ~l~V~nL--p~~~te~~L~~~F~~~G~i~-----~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
++|| |+ ...++..+|..++..-+.|. .|.|.. .|.||+... +.|...+..|+...+.++.|.|+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~-------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA-------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC-------CceEEEcCh-hhHHHHHHHhccccccCCceEEE
Confidence 3444 55 34588888888876555443 466653 388999874 47888999999999999999999
Q ss_pred Eec
Q 025976 127 VVG 129 (245)
Q Consensus 127 ~a~ 129 (245)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 875
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.33 E-value=0.025 Score=52.50 Aligned_cols=83 Identities=16% Similarity=0.060 Sum_probs=59.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHh-hcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeC----Cce
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELF-SEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD----GKP 122 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~----g~~ 122 (245)
...-+++.|.|+|...|...|.+.- ...+.-..+.+..|- +..+.|||||.|.+++.+..+.+++|++.+. .+.
T Consensus 385 e~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Ki 464 (549)
T KOG4660|consen 385 ECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKI 464 (549)
T ss_pred cCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceee
Confidence 3455677777777766666655443 234555566677666 6678899999999999999999999997763 345
Q ss_pred eEEEEecCC
Q 025976 123 MKIEVVGTN 131 (245)
Q Consensus 123 l~V~~a~~~ 131 (245)
+.|.||.-+
T Consensus 465 a~itYArIQ 473 (549)
T KOG4660|consen 465 ASITYARIQ 473 (549)
T ss_pred eeeehhhhh
Confidence 666666544
No 137
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.29 E-value=0.057 Score=47.61 Aligned_cols=17 Identities=71% Similarity=1.384 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCCCCC
Q 025976 195 GRGRGRGGGGGGGRGRG 211 (245)
Q Consensus 195 g~g~grgg~ggg~~g~g 211 (245)
++|+++|+++||++|++
T Consensus 436 gggr~gggr~gggrgrg 452 (465)
T KOG3973|consen 436 GGGRDGGGRDGGGRGRG 452 (465)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 33333334333333333
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.23 E-value=0.14 Score=39.83 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=53.1
Q ss_pred CCCCCEEEEcCCCCCCcH-HHHH---HHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 49 IEVGTKLYVSNLHPGVTN-DDIR---ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te-~~L~---~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
.++-.||.|.=|..++.. +||+ ..++.||+|.+|.++- +-.|.|.|.+..+|-.|+.+++. ..-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 345677888776665433 4554 4468999999998862 34699999999999999998876 44466666
Q ss_pred EEEec
Q 025976 125 IEVVG 129 (245)
Q Consensus 125 V~~a~ 129 (245)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 66543
No 139
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.16 E-value=0.016 Score=52.84 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=59.4
Q ss_pred CEEEEcCCCCCC-cHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 53 TKLYVSNLHPGV-TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 53 ~~l~V~nLp~~~-te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
+.|-+.-+|+.. +.++|...|.+||+|..|.|-+. .-.|.|+|.+..+|-.|. ..++..|+++.|+|.|-.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 455555566664 55899999999999999988755 235999999999997776 46899999999999998874
Q ss_pred C
Q 025976 132 A 132 (245)
Q Consensus 132 ~ 132 (245)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.15 E-value=0.081 Score=43.14 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=46.0
Q ss_pred cHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC--CceeCCceeEEEEecCCC
Q 025976 65 TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 65 te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~--~~~l~g~~l~V~~a~~~~ 132 (245)
..+.|+++|..|+.+..+.++. +-.=..|.|.+.+.|.+|...|+ +..+.+..|+|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999999999988777763 33468999999999999999999 899999999999885443
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.07 E-value=0.14 Score=35.25 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHhhcCCC-----eeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 62 PGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 62 ~~~te~~L~~~F~~~G~-----i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..++..+|..++..... |-.|.|.. -|+||+-... .|+.++..|++..+.|+.|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45778888888866543 44677763 3899998754 888999999999999999999875
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.58 E-value=0.023 Score=53.86 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=62.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
+.++..+|||+||...+..+-++.++..||.|..+.... |+|++|..+.-...|+..|+...++++.|.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 445678899999999999999999999999988765552 999999999999999999999999888876654
No 143
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.18 E-value=0.26 Score=33.25 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=43.0
Q ss_pred CcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 64 VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 64 ~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
++.++|+..+..|. ... |..|++| =||.|.+.++|++|....++..+....|.+
T Consensus 12 ~~v~d~K~~Lr~y~-~~~--I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYR-WDR--IRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCC-cce--EEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 67899999999996 443 4455543 489999999999999999998887777654
No 144
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.02 E-value=1 Score=33.54 Aligned_cols=70 Identities=10% Similarity=0.053 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhcCC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc
Q 025976 51 VGTKLYVSNLHPG-VTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 121 (245)
Q Consensus 51 ~~~~l~V~nLp~~-~te~~L~~~F~~~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~ 121 (245)
..+.|.|--+|+. ++.++|..+.+.+- .|..++|+.+.+ .++-.+++.|.+.+.|+.....+|+..++.-
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3345555455544 55566766656553 456788887764 3566899999999999999999999887543
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.01 E-value=0.073 Score=46.46 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=64.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..+++||+++.+.+.+.++..+|..+|.+..+.+.... ...++++++|.|...+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57899999999999999899999999987776666655 67889999999999999999997644456666665555444
Q ss_pred CC
Q 025976 130 TN 131 (245)
Q Consensus 130 ~~ 131 (245)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 33
No 146
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.32 E-value=0.51 Score=41.06 Aligned_cols=70 Identities=24% Similarity=0.392 Sum_probs=49.3
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCce-eEEEEecCC
Q 025976 55 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP-MKIEVVGTN 131 (245)
Q Consensus 55 l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~-l~V~~a~~~ 131 (245)
|-|-++|+.. ...|..+|++||.|++.... .+ -.+-+|.|.+..+|++||.+ |+..|++.. |-|..+..+
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 4444666543 35677899999999875443 22 34899999999999999964 898888764 345544433
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.04 E-value=0.11 Score=50.72 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=58.3
Q ss_pred EEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee--CCceeEEEEecCCC
Q 025976 56 YVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL--DGKPMKIEVVGTNA 132 (245)
Q Consensus 56 ~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l--~g~~l~V~~a~~~~ 132 (245)
++.|.+-..+...|..+|++||.|..+..+++- ..|.|+|.+.+.|..|++.|++.++ -|-+.+|.+++.-+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344445566777899999999999998887653 4799999999999999999999764 57888998887654
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.67 Score=43.69 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=61.4
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcC----CCeeEEEEeeCCC-----------CC---------------------
Q 025976 49 IEVGTKLYVSNLHPG-VTNDDIRELFSEI----GELKRYAIHFDKN-----------GR--------------------- 91 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~t-----------g~--------------------- 91 (245)
....++|-|.||.|. +...+|.-+|+.| |.|.+|.|+...- |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 6778999999876 5788888765431 11
Q ss_pred ----------------CceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 92 ----------------PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 92 ----------------~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
-.-||.|+|.+.+.|.+....++++.+...-+.+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 123899999999999999999999999766555444
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.25 E-value=1.1 Score=41.14 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=58.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 121 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~ 121 (245)
+++.|+|--+|..++..||..+...| -.|..|+|++|... ++-.++|.|.+.++|......+|+..|..-
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 37899999999999999999888755 45778999987632 344689999999999999999999887653
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=85.71 E-value=0.037 Score=49.97 Aligned_cols=80 Identities=14% Similarity=0.291 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++.+-|.|+|+...++.|..|+.+||.|..|......+. .-..-|+|...+.+..||..|++..+....++|.|..
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 34567999999999999999999999999998766433221 1234578899999999999999999999999998875
Q ss_pred CC
Q 025976 130 TN 131 (245)
Q Consensus 130 ~~ 131 (245)
..
T Consensus 156 de 157 (584)
T KOG2193|consen 156 DE 157 (584)
T ss_pred hh
Confidence 44
No 151
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.46 E-value=7.6 Score=33.75 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=35.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeeCCCCCCceEEEEEEccH
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARR 103 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~tg~~~G~afV~F~~~ 103 (245)
..+-|+|+||+.++...||+..+.+.+.+- ++.+. -+.+-||+.|-+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCc
Confidence 346699999999999999999988766443 33332 3456799999664
No 152
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=84.41 E-value=0.81 Score=36.94 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=54.9
Q ss_pred CCCEEEEcCCCCCCcHH-----HHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc-eeE
Q 025976 51 VGTKLYVSNLHPGVTND-----DIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMK 124 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~-----~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~-~l~ 124 (245)
-.+++++.+|+..+-.+ ....+|.+|.+.....++ .+....-|.|.+++.|..|..+++...|.++ .++
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 34668888888765332 345667766665554554 3345678899999999999999999999998 777
Q ss_pred EEEecCCC
Q 025976 125 IEVVGTNA 132 (245)
Q Consensus 125 V~~a~~~~ 132 (245)
.-++.+..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 66666543
No 153
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=82.07 E-value=12 Score=30.41 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=2.5
Q ss_pred CCCeeE
Q 025976 76 IGELKR 81 (245)
Q Consensus 76 ~G~i~~ 81 (245)
||.|.+
T Consensus 98 fG~i~d 103 (215)
T KOG3262|consen 98 FGPIND 103 (215)
T ss_pred cccccc
Confidence 444443
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=80.62 E-value=0.23 Score=44.57 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=55.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
.+|+|.+|+..+...++-++|..+|.|.+..+-. +...-+|.|+|....+...|+. +++..+.-+...+.+.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 6899999999999999999999999988655542 3334578899998888888885 4666665444444444433
No 155
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.53 E-value=4 Score=37.03 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeeCCCCCCceEEEEEEccHHHHHHHHH
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARRSDAFAALK 111 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~ 111 (245)
.+.|-|.++|.....+||..+|+.|+.-- .|.++-+. .||-.|.+...|..|+-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhh
Confidence 46789999999999999999999997543 45555442 69999999999999884
No 156
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=78.23 E-value=35 Score=27.77 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=4.5
Q ss_pred EEEEEccHHH
Q 025976 96 AEVVYARRSD 105 (245)
Q Consensus 96 afV~F~~~e~ 105 (245)
|=|.+++.++
T Consensus 81 APIylenk~q 90 (215)
T KOG3262|consen 81 APIYLENKEQ 90 (215)
T ss_pred Cceeecchhh
Confidence 3344444444
No 157
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.39 E-value=2.5 Score=31.75 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=27.5
Q ss_pred CEEEEcCCCCC---------CcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHH
Q 025976 53 TKLYVSNLHPG---------VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSD 105 (245)
Q Consensus 53 ~~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~ 105 (245)
.++.|-|++.. ++.+.|.+.|+.|..++ |..+.++. -+.|+++|+|.+.-.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWS 68 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChH
Confidence 34566677543 35578999999998765 66666665 346899999976533
No 158
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.50 E-value=0.55 Score=42.88 Aligned_cols=79 Identities=4% Similarity=-0.161 Sum_probs=61.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
+..|+..|+..+++.+|.-+|..|+.|..+.+..-. .+...-.+||+-.+ ..+..||..+...++.+..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 456788899999999999999999988877766544 45556678888765 4778888887777888888888887654
Q ss_pred C
Q 025976 132 A 132 (245)
Q Consensus 132 ~ 132 (245)
.
T Consensus 83 ~ 83 (572)
T KOG4365|consen 83 S 83 (572)
T ss_pred h
Confidence 4
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.44 E-value=9.1 Score=33.37 Aligned_cols=78 Identities=12% Similarity=0.220 Sum_probs=55.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC--------CCCCceEEEEEEccHHHHHHHH----HHhCC--ce
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--------NGRPSGSAEVVYARRSDAFAAL----KRYNN--VL 117 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--------tg~~~G~afV~F~~~e~a~~Ai----~~l~~--~~ 117 (245)
.+.|.+.||...++-..+...|.+||+|++|.++.+. ..+......+.|-+.+.+.... +.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4668899999999888899999999999999998765 2234457889998887765433 22322 33
Q ss_pred eCCceeEEEEec
Q 025976 118 LDGKPMKIEVVG 129 (245)
Q Consensus 118 l~g~~l~V~~a~ 129 (245)
|....|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 556666665544
No 160
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=70.73 E-value=1.1 Score=37.43 Aligned_cols=69 Identities=30% Similarity=0.369 Sum_probs=56.1
Q ss_pred CCCCEEEEcC----CCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 025976 50 EVGTKLYVSN----LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 50 ~~~~~l~V~n----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
+-..+++.++ |...++++.+...|++.+.+..+++..+.++.+..+.||++......-.++..+....+
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 3446777777 78889999999999999999999999888888888999999887777777766555443
No 161
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=68.77 E-value=6.8 Score=31.72 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=39.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEeeCCCC--CCceEEEEEEccHHHHHHHHHH
Q 025976 53 TKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNG--RPSGSAEVVYARRSDAFAALKR 112 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~tg--~~~G~afV~F~~~e~a~~Ai~~ 112 (245)
.++|.. .|+++|.++.. .-|.+..|.+.....+ ..+|-.||+|.+.+.|.++++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455554 56677666643 2278888877766544 7789999999999999988864
No 162
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.38 E-value=0.85 Score=42.80 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=50.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
..|+|||.|++++++-++|..++..+--+..+.+.... .....-+..|+|.---....|+-.||++.+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45889999999999999999999887555555554333 33444567888877666777777777766543
No 163
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=66.70 E-value=8.2 Score=26.15 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 67 DDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 67 ~~L~~~F~~~G-~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
++|++.|...| ++..|..+..+ +..+...-||+.....+... .|+-..|+++.+.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46777787776 45677777777 56666778888876644333 35557788889888844
No 164
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=65.68 E-value=8.7 Score=31.50 Aligned_cols=61 Identities=26% Similarity=0.413 Sum_probs=42.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCC-CCceEEEEEEccHHHHHH
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG-RPSGSAEVVYARRSDAFA 108 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg-~~~G~afV~F~~~e~a~~ 108 (245)
.......+++.+++..++..++..+|..++.+..+.+...... ....+.++.+.....+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALE 282 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhh
Confidence 4457788999999999999999999999999977766665522 233333444443333333
No 165
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.85 E-value=17 Score=24.10 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=16.5
Q ss_pred HHHHHHHhhcCCCeeEEEEee
Q 025976 66 NDDIRELFSEIGELKRYAIHF 86 (245)
Q Consensus 66 e~~L~~~F~~~G~i~~v~i~~ 86 (245)
.++|+++|+..|+|.-+-+..
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 368999999999998655543
No 166
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=59.21 E-value=20 Score=24.18 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=41.0
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 67 DDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 67 ~~L~~~F~~~G-~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
++|.+.|...| .|..|.-+..+ +..+.-.-||+++...+... .|+=..|.++.|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 45666676555 56677777776 66777788999887655333 345567888888888554
No 167
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=58.78 E-value=12 Score=33.81 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=46.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeeCCC---CCCceEEEEEEccHHHHHHHHHHhCCcee
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKN---GRPSGSAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~t---g~~~G~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
.-+.|.|.+||+..++.+|.+-...|-.-+ ...+..... ..-.+.|||.|..+++...-...++++.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 347799999999999999887776653211 122221111 12246789999999998888888888664
No 168
>PRK11901 hypothetical protein; Reviewed
Probab=55.54 E-value=40 Score=29.97 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEE--EEEccHHHHHHHHHHhCC
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAE--VVYARRSDAFAALKRYNN 115 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~af--V~F~~~e~a~~Ai~~l~~ 115 (245)
....+|-|..+. .++.|..|..+++ +..+.|.... .|+.- |.. =.|.+.++|..||..|..
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 344666666655 6888888887774 4555555444 44432 333 378999999999998864
No 169
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=54.96 E-value=14 Score=32.43 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=27.2
Q ss_pred EEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCCC
Q 025976 96 AEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 133 (245)
Q Consensus 96 afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~~ 133 (245)
|||+|.+..+|+.|++.+.... ...+.|+.|.+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998654433 35667877766654
No 170
>PF14893 PNMA: PNMA
Probab=52.24 E-value=16 Score=32.70 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=39.3
Q ss_pred hhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhh----cCCCeeEEEEeeCCCCCCceEEEEEEccH
Q 025976 36 LFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARR 103 (245)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~tg~~~G~afV~F~~~ 103 (245)
..++|++.. ..+.-+.|.|.+||.++++++|++.+. ..|...-+.-++.+.-.. --|+|+|...
T Consensus 5 lL~dWCr~m---~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~-~aalve~~e~ 72 (331)
T PF14893_consen 5 LLEDWCRGM---GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENA-KAALVEFAED 72 (331)
T ss_pred HHHHHHHhc---CcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhccc-ceeeeecccc
Confidence 456676544 346678899999999999999988864 334322111111222122 2688888754
No 171
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=51.63 E-value=43 Score=30.76 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=52.8
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcC----CCeeEEEEeeCCCCC--------------------------------
Q 025976 49 IEVGTKLYVSNLHPG-VTNDDIRELFSEI----GELKRYAIHFDKNGR-------------------------------- 91 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~tg~-------------------------------- 91 (245)
-.+...|-|-||.|. +...+|..+|+.| |.|..|.|+...-|+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456788999999987 6678999998876 566666654322100
Q ss_pred -----C-----------------------------ceEEEEEEccHHHHHHHHHHhCCceeCCc
Q 025976 92 -----P-----------------------------SGSAEVVYARRSDAFAALKRYNNVLLDGK 121 (245)
Q Consensus 92 -----~-----------------------------~G~afV~F~~~e~a~~Ai~~l~~~~l~g~ 121 (245)
. .-||.|++.+.+.+......++++.+...
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 0 22788999999999988888888877654
No 172
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=51.60 E-value=13 Score=31.36 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY 82 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 82 (245)
.....+||+-|||..+|++.|..+.+++|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456789999999999999999999999866544
No 173
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=51.56 E-value=22 Score=30.78 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=17.2
Q ss_pred CEEEEcCCC---CCCcHHHHHHHhhc--CC--CeeE-EEEeeCC
Q 025976 53 TKLYVSNLH---PGVTNDDIRELFSE--IG--ELKR-YAIHFDK 88 (245)
Q Consensus 53 ~~l~V~nLp---~~~te~~L~~~F~~--~G--~i~~-v~i~~~~ 88 (245)
..|.|--+| .+.-|+--..+|.. .| ...+ |.|+.++
T Consensus 64 ~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~ 107 (271)
T COG1512 64 AQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAM 107 (271)
T ss_pred CeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEc
Confidence 444444444 33344445577766 55 2222 5555554
No 174
>PF15063 TC1: Thyroid cancer protein 1
Probab=48.17 E-value=12 Score=25.70 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=32.4
Q ss_pred cccccccccCCCCCCCcchhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCee
Q 025976 18 YTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK 80 (245)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 80 (245)
|..+.+..-..+..|.+-.. ..++--+.||-.+++..+|..||..-|..+
T Consensus 4 ~~~~~S~~v~Ps~~g~~~dt-------------~~RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 4 YATSASVRVSPSVHGYKFDT-------------ASRKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred ccCCcceeccCCCCCCCcch-------------HHhhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 34444444455566776331 112233568889999999999999998754
No 175
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=47.01 E-value=78 Score=21.89 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=37.5
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHH
Q 025976 55 LYVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 112 (245)
Q Consensus 55 l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~ 112 (245)
-|+=.++..++..+|+..++. |+ .|..|..+.-+.+.- =|||++..-+.|......
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K--KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK--KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce--EEEEEECCCCcHHHHHHh
Confidence 344467888999999988876 43 344565555443332 499999888777766544
No 176
>COG4907 Predicted membrane protein [Function unknown]
Probab=46.15 E-value=19 Score=33.48 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 025976 105 DAFAALKR 112 (245)
Q Consensus 105 ~a~~Ai~~ 112 (245)
.+.+|++.
T Consensus 527 kVvkam~~ 534 (595)
T COG4907 527 KVVKAMRK 534 (595)
T ss_pred HHHHHHHH
Confidence 33444433
No 177
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=44.49 E-value=83 Score=22.15 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=37.3
Q ss_pred EcCCCCCCcHHHHHHHhhc-CC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh
Q 025976 57 VSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 113 (245)
Q Consensus 57 V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l 113 (245)
+=-++..++..+|+..++. |+ .|..|..+..+.+.- =|||.+...+.|......|
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE--EEEEEeCCCCcHHHHHHhh
Confidence 3346788899999888876 44 345666655554333 4999999888887765443
No 178
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=43.73 E-value=39 Score=25.47 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=5.5
Q ss_pred hCCceeCCceeE
Q 025976 113 YNNVLLDGKPMK 124 (245)
Q Consensus 113 l~~~~l~g~~l~ 124 (245)
|+...|.|..|+
T Consensus 56 ~pEcYirGttIk 67 (134)
T KOG3293|consen 56 MPECYIRGTTIK 67 (134)
T ss_pred cceeEEecceeE
Confidence 344445554443
No 179
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=42.27 E-value=54 Score=26.68 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=8.1
Q ss_pred CCEEEEcCCCCC
Q 025976 52 GTKLYVSNLHPG 63 (245)
Q Consensus 52 ~~~l~V~nLp~~ 63 (245)
++.+.|++|-.+
T Consensus 5 N~V~LiGrLg~D 16 (182)
T PRK06958 5 NKVILVGNLGAD 16 (182)
T ss_pred cEEEEEEEecCC
Confidence 456778888754
No 180
>PRK10905 cell division protein DamX; Validated
Probab=42.24 E-value=1.2e+02 Score=27.03 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEE--EEEEccHHHHHHHHHHhCC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSA--EVVYARRSDAFAALKRYNN 115 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~a--fV~F~~~e~a~~Ai~~l~~ 115 (245)
...+|-|.-+. +++.|.+|..+++.-..+.+...++|+.. |. +=.|.+.++|++||..|..
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENLKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCCCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCH
Confidence 34566666665 67888888877753223322222355432 22 3378999999999998864
No 181
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.16 E-value=48 Score=28.85 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=43.5
Q ss_pred CCCCCEEEEcCCCC------------CCcHHHHHHHhhcCCCeeEEEEeeCC------CCCC-----ceEE---------
Q 025976 49 IEVGTKLYVSNLHP------------GVTNDDIRELFSEIGELKRYAIHFDK------NGRP-----SGSA--------- 96 (245)
Q Consensus 49 ~~~~~~l~V~nLp~------------~~te~~L~~~F~~~G~i~~v~i~~~~------tg~~-----~G~a--------- 96 (245)
-+...|||+.+||- -.+++-|...|..||.|..|.|.... +++. .||+
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 34456788888763 14677899999999999988775421 3443 3333
Q ss_pred EEEEccHHHHHHHHHHhCCcee
Q 025976 97 EVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 97 fV~F~~~e~a~~Ai~~l~~~~l 118 (245)
||.|....-...|+..|.+..+
T Consensus 226 yvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchH
Confidence 3444444445556666666443
No 182
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=41.98 E-value=10 Score=24.19 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=6.2
Q ss_pred HHHHHHHHHH
Q 025976 231 LDKELDNYHA 240 (245)
Q Consensus 231 ~d~~l~~~~~ 240 (245)
.|.|||+||.
T Consensus 7 ~dpELDqFMe 16 (52)
T PF03791_consen 7 ADPELDQFME 16 (52)
T ss_pred CCccHHHHHH
Confidence 3566676664
No 183
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.77 E-value=17 Score=25.96 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=20.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHh
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELF 73 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F 73 (245)
...++|.|.|||....+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356889999999999999998654
No 184
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=40.01 E-value=1e+02 Score=29.12 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=36.6
Q ss_pred HHHHHHHhh----cCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC
Q 025976 66 NDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114 (245)
Q Consensus 66 e~~L~~~F~----~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~ 114 (245)
.-+|..+|- .+|-|.++.|...+.-......++.|.+.++|..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346777774 6788888887776644445677899999999999987764
No 185
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.76 E-value=13 Score=33.76 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=46.8
Q ss_pred CEEEEcCCCCCCcHH--------HHHHHhhc--CCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHH
Q 025976 53 TKLYVSNLHPGVTND--------DIRELFSE--IGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 111 (245)
Q Consensus 53 ~~l~V~nLp~~~te~--------~L~~~F~~--~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~ 111 (245)
+.+|+.++..+.+.+ +|...|.. .+.+..|.+.++. ...+.|..|++|.....++++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 557777776654444 89999987 6777788888877 77888999999999999998873
No 186
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=38.00 E-value=36 Score=29.30 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=24.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEE
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAI 84 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 84 (245)
.....|+|||++++..-|..++...-.+..+.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 345779999999999999999877645443333
No 187
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=36.01 E-value=13 Score=24.64 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhcC
Q 025976 232 DKELDNYHAEAMQI 245 (245)
Q Consensus 232 d~~l~~~~~~~~~~ 245 (245)
..||++|.+++|++
T Consensus 35 nseleeWl~~e~E~ 48 (65)
T PF08599_consen 35 NSELEEWLRQEMEE 48 (65)
T ss_pred cccHHHHHHHHHHH
Confidence 36899999988863
No 188
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=34.58 E-value=61 Score=23.07 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=22.9
Q ss_pred EEEEEccHHHHHHHHHHhCC--ceeCCceeEEEEe
Q 025976 96 AEVVYARRSDAFAALKRYNN--VLLDGKPMKIEVV 128 (245)
Q Consensus 96 afV~F~~~e~a~~Ai~~l~~--~~l~g~~l~V~~a 128 (245)
|+|+|.++.-|+..++. .. ..++...+.|...
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEE
Confidence 68999999999988853 33 4456666666543
No 189
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=32.79 E-value=1.3e+02 Score=18.93 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=38.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccH----HHHHHHHHH
Q 025976 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR----SDAFAALKR 112 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~----e~a~~Ai~~ 112 (245)
||.|.||.=.--...|++.+...-.|..+.+... .+.+-|+|... ++...+|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5677788766666788888888877888888754 34688888644 555666654
No 190
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=32.44 E-value=1.1e+02 Score=21.69 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=31.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEc
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA 101 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~ 101 (245)
+...-|||++++..+-|.-...+.+..+. -++.|...... ..||.|-++-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~-G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGD-GSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCC-ccEEEEEccCC-CCCEEEEEeC
Confidence 34567999999987766555555554433 23444444332 5789988773
No 191
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=29.14 E-value=26 Score=33.90 Aligned_cols=73 Identities=25% Similarity=0.239 Sum_probs=53.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.+||+-|-...-+..-+..++..++.+..+.++... .+....-++++|..+..+..|. .|.+..+....+++.
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks~ 585 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKSH 585 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceecc
Confidence 478888888888888888888888888766665554 5555668999999998776665 466666666555543
No 192
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=28.80 E-value=1e+02 Score=21.87 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCCCcchhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE--------EEeeCC-CCCCceEEEEEE
Q 025976 30 FPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY--------AIHFDK-NGRPSGSAEVVY 100 (245)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v--------~i~~~~-tg~~~G~afV~F 100 (245)
.+|.+.+..++....-...++-..++.+ .+-+++.+++.||.-..+ .|+... ----||+.=|+|
T Consensus 4 Ekw~~eqV~EAaa~IvE~~Pe~elk~KL-------d~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEf 76 (91)
T PF13037_consen 4 EKWEPEQVMEAAAQIVEQQPEIELKFKL-------DHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEF 76 (91)
T ss_pred hhcCHHHHHHHHHHHHhhCCCceEEEec-------CceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceee
Confidence 4688777666554433333344444443 455688889999864433 222111 112356777999
Q ss_pred ccHHHHHHHHHHh
Q 025976 101 ARRSDAFAALKRY 113 (245)
Q Consensus 101 ~~~e~a~~Ai~~l 113 (245)
-.+++.+..++.+
T Consensus 77 lkP~~l~~V~eri 89 (91)
T PF13037_consen 77 LKPEDLQEVIERI 89 (91)
T ss_pred eCchhHHHHHHHh
Confidence 9999998888765
No 193
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=27.91 E-value=19 Score=24.15 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCeeE-EEEeeCCCCCCceEEEEEEccHHHHHHHHHHh
Q 025976 67 DDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 113 (245)
Q Consensus 67 ~~L~~~F~~~G~i~~-v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l 113 (245)
++|.+.|..+..... |++ .+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHHh
Confidence 577777766544442 223 4899999999988887654
No 194
>COG4371 Predicted membrane protein [Function unknown]
Probab=27.50 E-value=1.7e+02 Score=25.22 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=11.4
Q ss_pred ChHhHHHHHHHHHHh
Q 025976 227 SADDLDKELDNYHAE 241 (245)
Q Consensus 227 ~~~~~d~~l~~~~~~ 241 (245)
.++||.+||+..--.
T Consensus 156 ~a~elk~eL~~iA~~ 170 (334)
T COG4371 156 EADELKSELQRIAQQ 170 (334)
T ss_pred hhHHHHHHHHHHHHh
Confidence 478899999987543
No 195
>PHA01632 hypothetical protein
Probab=26.53 E-value=66 Score=20.80 Aligned_cols=21 Identities=10% Similarity=0.434 Sum_probs=16.6
Q ss_pred EEEcCCCCCCcHHHHHHHhhc
Q 025976 55 LYVSNLHPGVTNDDIRELFSE 75 (245)
Q Consensus 55 l~V~nLp~~~te~~L~~~F~~ 75 (245)
|.|..+|...|+++|+.++.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456689999999999887643
No 196
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=26.04 E-value=2.6e+02 Score=26.93 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=36.8
Q ss_pred cHHHHHHHh----hcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC
Q 025976 65 TNDDIRELF----SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114 (245)
Q Consensus 65 te~~L~~~F----~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~ 114 (245)
+.-+|..+| ..+|-|.++.|...+.-...-++++.|.+.++|..|+..+.
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 345777776 36788888888766644455678999999999988887653
No 197
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.19 E-value=54 Score=19.21 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=10.1
Q ss_pred CCCcHHHHHHHhhcCC
Q 025976 62 PGVTNDDIRELFSEIG 77 (245)
Q Consensus 62 ~~~te~~L~~~F~~~G 77 (245)
..+++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578899999998754
No 198
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.82 E-value=2.5e+02 Score=20.68 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHH
Q 025976 67 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 110 (245)
Q Consensus 67 ~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai 110 (245)
.+|.+++..+| |.+-.|..+.. .+.-|+++++.+.+..-++|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~-~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEE-ENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCC-cccEEEEEEEcChHHHHHHH
Confidence 45777888887 56555555542 23459999999554443333
No 199
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=24.75 E-value=2.2e+02 Score=26.07 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=41.2
Q ss_pred CCEEEEcC-CCCCCcHHHHHHHhh----cCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC
Q 025976 52 GTKLYVSN-LHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114 (245)
Q Consensus 52 ~~~l~V~n-Lp~~~te~~L~~~F~----~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~ 114 (245)
+..+.++. .+....--+|..+|. .+|-|.++.|...+.-....+.++.|.+.++|..++..+.
T Consensus 131 G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 131 GEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 44454432 222333346777774 4777888888777644455677889999999998886553
No 200
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.10 E-value=3.2e+02 Score=20.71 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=46.1
Q ss_pred CCEEEEcCCCCC---CcHHHHHHHhhcCC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 52 GTKLYVSNLHPG---VTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 52 ~~~l~V~nLp~~---~te~~L~~~F~~~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...|.|...... .+-..|..++..-| .++.+.... ....|.|.+.++..+|.+.|....-++..|.+.+
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~-------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN-------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC-------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 355777766433 45577888887765 233443332 2588999999998888887766554555666555
Q ss_pred ec
Q 025976 128 VG 129 (245)
Q Consensus 128 a~ 129 (245)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 54
No 201
>PF10957 DUF2758: Protein of unknown function (DUF2758); InterPro: IPR020296 Cse60 is expressed during sporulation in Bacillus subtilis. Transcription commences around 2h after the start of sporulation and had an absolute requirement for the transcription factor sigmaE. Maximal expression of cse60 further depended on the DNA-binding protein SpoIIID. Cse60 is an acidic product of only 60 residues, whose function is not known [].
Probab=24.06 E-value=62 Score=21.27 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=14.3
Q ss_pred CChHhHHHHHHHHHHhh
Q 025976 226 KSADDLDKELDNYHAEA 242 (245)
Q Consensus 226 ~~~~~~d~~l~~~~~~~ 242 (245)
..++||+.++++|+++-
T Consensus 10 ~he~dLe~~vN~fL~~~ 26 (60)
T PF10957_consen 10 EHEKDLEDQVNDFLAKL 26 (60)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 45789999999999873
No 202
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.67 E-value=1e+02 Score=21.38 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCceEEEEEEccHHHHHHHHHHhCCce
Q 025976 91 RPSGSAEVVYARRSDAFAALKRYNNVL 117 (245)
Q Consensus 91 ~~~G~afV~F~~~e~a~~Ai~~l~~~~ 117 (245)
..+||-|||=.+.+++..|++.+....
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 368999999999999999998776543
No 203
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=23.08 E-value=1.2e+02 Score=26.30 Aligned_cols=9 Identities=22% Similarity=0.301 Sum_probs=3.9
Q ss_pred EEcCCCCCC
Q 025976 56 YVSNLHPGV 64 (245)
Q Consensus 56 ~V~nLp~~~ 64 (245)
+|..+...+
T Consensus 35 ~V~D~t~~L 43 (271)
T COG1512 35 RVTDLTGTL 43 (271)
T ss_pred eeeeccccC
Confidence 444444433
No 204
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.07 E-value=90 Score=26.55 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhh
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFS 74 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~ 74 (245)
....++|+|||+.++..-|..++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 456789999999999999998886
No 205
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=21.39 E-value=2.1e+02 Score=21.64 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=24.7
Q ss_pred CCcHHHHHHHhhcCCCee-EEE----EeeCC-CCCCceEEEEEEccHHHHH
Q 025976 63 GVTNDDIRELFSEIGELK-RYA----IHFDK-NGRPSGSAEVVYARRSDAF 107 (245)
Q Consensus 63 ~~te~~L~~~F~~~G~i~-~v~----i~~~~-tg~~~G~afV~F~~~e~a~ 107 (245)
+++.++|++-++..-... ++. +...- .|.+.|||.| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 467788877665432222 222 22222 6788889987 56665544
No 206
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=21.01 E-value=27 Score=31.27 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCc
Q 025976 67 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 116 (245)
Q Consensus 67 ~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~ 116 (245)
..|.+++.+.|.|..-.|... -+.|.+||....+++++++++.|...
T Consensus 276 p~iF~~i~~~G~v~~~EM~rt---FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRT---FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHH---hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 455666677776654333322 34578899999999999999988764
No 207
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=21.00 E-value=2.4e+02 Score=23.22 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred CcHHHHHHH---hhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 64 VTNDDIREL---FSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 64 ~te~~L~~~---F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
+++++|..| ...|| |.++ |+.|+ ++...-+.|+.=.+.+.+..|+..+....+..
T Consensus 39 i~~~~lk~F~k~AkKyG-V~ya-v~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~ 97 (204)
T PF12687_consen 39 ITDEDLKEFKKEAKKYG-VDYA-VKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKK 97 (204)
T ss_pred cCHhhHHHHHHHHHHcC-CceE-EeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhh
Confidence 455565544 56887 6654 55555 44445556666677888888888776655543
No 208
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=21.00 E-value=1.9e+02 Score=23.49 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=7.7
Q ss_pred CCCCChHhHHHHH
Q 025976 223 PVDKSADDLDKEL 235 (245)
Q Consensus 223 ~~~~~~~~~d~~l 235 (245)
++.---||+|.+|
T Consensus 168 ~~~~~~~~~~~~~ 180 (182)
T PRK06958 168 PAGGGFDEMDDDI 180 (182)
T ss_pred CCCCCcccccccC
Confidence 3445567777654
No 209
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=20.98 E-value=1e+02 Score=26.41 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=18.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc
Q 025976 54 KLYVSNLHPGVTNDDIRELFSE 75 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~ 75 (245)
.+.|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 210
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.70 E-value=2.2e+02 Score=20.41 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEE--ee-CCCCCCceEEEEEE
Q 025976 54 KLYVSNLHPGVTNDDIR---ELFSEIGELKRYAI--HF-DKNGRPSGSAEVVY 100 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i--~~-~~tg~~~G~afV~F 100 (245)
..|+.+||..+.+.++. .+|..+..-..|.+ .. .......|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 35889999998887655 45555543334433 11 22455666665544
No 211
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=20.64 E-value=2.7e+02 Score=20.21 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhh-cCCCeeE-EEEeeCC----CCCCceEEEEEEccHHHHH
Q 025976 63 GVTNDDIRELFS-EIGELKR-YAIHFDK----NGRPSGSAEVVYARRSDAF 107 (245)
Q Consensus 63 ~~te~~L~~~F~-~~G~i~~-v~i~~~~----tg~~~G~afV~F~~~e~a~ 107 (245)
+.+..+|++-+. .|+.-.+ |.|..-+ .+.+.|||.| |.+.+.|.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~k 79 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERAR 79 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHH
Confidence 456778876654 4553222 3222222 3456666666 55555443
No 212
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.39 E-value=94 Score=27.18 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=18.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc
Q 025976 54 KLYVSNLHPGVTNDDIRELFSE 75 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~ 75 (245)
.+.|.|||+.++...|..++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4778999999999999888864
No 213
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.14 E-value=3.4e+02 Score=19.39 Aligned_cols=68 Identities=13% Similarity=0.318 Sum_probs=36.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhh-------cC-CCeeEEEEe------eCCCCCCce-EEEEEEccHHHHHHHHHHhCCcee
Q 025976 54 KLYVSNLHPGVTNDDIRELFS-------EI-GELKRYAIH------FDKNGRPSG-SAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~-------~~-G~i~~v~i~------~~~tg~~~G-~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
++|| |.++++++++..+.+ .. |.|..+... +.-.....| |.++.|.-..++.+.++. ...+
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler--~lri 85 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK--ALKL 85 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH--HhCC
Confidence 3444 456667776655543 33 355544321 111234455 578888877776666653 2445
Q ss_pred CCceeEE
Q 025976 119 DGKPMKI 125 (245)
Q Consensus 119 ~g~~l~V 125 (245)
+...|+-
T Consensus 86 ~e~VlR~ 92 (97)
T CHL00123 86 DENVLRY 92 (97)
T ss_pred CCCeEEE
Confidence 5555543
No 214
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=91 Score=29.63 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=33.6
Q ss_pred ceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 93 SGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 93 ~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
..|++++|++++.+.+|+..+++..+.+..+.|.+.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 3589999999999999999999998888887777665443
Done!