Query 025976
Match_columns 245
No_of_seqs 288 out of 2466
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 21:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3j_A RNA and export factor b 99.9 6.9E-23 2.4E-27 165.3 12.9 115 12-132 54-168 (177)
2 3q2s_C Cleavage and polyadenyl 99.9 2.2E-23 7.5E-28 174.8 6.1 82 51-132 67-151 (229)
3 4fxv_A ELAV-like protein 1; RN 99.9 3.7E-22 1.3E-26 146.0 11.7 80 51-130 18-98 (99)
4 3ulh_A THO complex subunit 4; 99.9 6.1E-22 2.1E-26 146.3 12.2 101 27-129 6-106 (107)
5 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.3E-21 4.6E-26 154.2 13.4 85 48-132 35-120 (156)
6 3s8s_A Histone-lysine N-methyl 99.9 6.2E-21 2.1E-25 142.2 12.3 82 50-131 4-86 (110)
7 2kt5_A RNA and export factor-b 99.8 1.8E-20 6.1E-25 142.2 12.7 104 28-133 13-116 (124)
8 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-20 5.5E-25 133.3 11.5 82 50-131 4-86 (87)
9 2dgs_A DAZ-associated protein 99.8 3E-20 1E-24 135.3 12.8 85 47-132 5-90 (99)
10 1whw_A Hypothetical protein ri 99.8 2.6E-20 8.8E-25 135.6 12.0 85 48-132 4-89 (99)
11 2dnz_A Probable RNA-binding pr 99.8 3.1E-20 1.1E-24 134.0 12.4 83 50-132 3-86 (95)
12 2dnm_A SRP46 splicing factor; 99.8 1.9E-20 6.4E-25 137.4 10.8 86 47-132 8-94 (103)
13 2dgo_A Cytotoxic granule-assoc 99.8 9.6E-20 3.3E-24 136.2 14.5 85 49-133 12-97 (115)
14 2fy1_A RNA-binding motif prote 99.8 5.2E-20 1.8E-24 138.3 12.9 84 49-132 4-87 (116)
15 2do4_A Squamous cell carcinoma 99.8 4.8E-20 1.6E-24 134.5 12.4 84 49-132 14-97 (100)
16 2cpz_A CUG triplet repeat RNA- 99.8 3.1E-20 1.1E-24 138.9 11.5 83 50-132 23-106 (115)
17 2do0_A HnRNP M, heterogeneous 99.8 1.1E-19 3.8E-24 135.5 14.5 85 48-132 11-95 (114)
18 2cq0_A Eukaryotic translation 99.8 3.9E-20 1.3E-24 135.6 11.6 84 49-132 12-96 (103)
19 2dnh_A Bruno-like 5, RNA bindi 99.8 6.5E-20 2.2E-24 134.8 12.8 84 50-133 13-99 (105)
20 2e5h_A Zinc finger CCHC-type a 99.8 3.6E-20 1.2E-24 133.4 11.1 82 48-129 12-94 (94)
21 1x5s_A Cold-inducible RNA-bind 99.8 3.6E-20 1.2E-24 135.5 11.2 85 48-132 8-93 (102)
22 1x5u_A Splicing factor 3B subu 99.8 4.3E-20 1.5E-24 135.8 11.6 85 48-132 11-96 (105)
23 2lkz_A RNA-binding protein 5; 99.8 1.3E-20 4.6E-25 136.7 8.6 83 48-130 5-94 (95)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.1E-20 1.1E-24 135.9 10.5 84 49-132 9-93 (102)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.4E-20 1.2E-24 131.0 10.2 81 49-129 4-85 (85)
26 2jrs_A RNA-binding protein 39; 99.8 2.6E-20 8.8E-25 138.2 9.9 101 32-132 6-107 (108)
27 2lxi_A RNA-binding protein 10; 99.8 6.8E-21 2.3E-25 137.1 6.6 81 52-132 1-84 (91)
28 3md1_A Nuclear and cytoplasmic 99.8 7.1E-20 2.4E-24 128.8 11.7 81 52-132 1-82 (83)
29 2cqc_A Arginine/serine-rich sp 99.8 4.1E-20 1.4E-24 133.3 10.6 83 48-130 11-94 (95)
30 2cqd_A RNA-binding region cont 99.8 1.1E-19 3.9E-24 136.0 13.1 84 48-132 13-97 (116)
31 1p27_B RNA-binding protein 8A; 99.8 5.2E-20 1.8E-24 135.6 11.1 84 49-132 20-104 (106)
32 1x4h_A RNA-binding protein 28; 99.8 6.5E-20 2.2E-24 136.1 11.6 85 48-132 11-102 (111)
33 2ywk_A Putative RNA-binding pr 99.8 4.7E-20 1.6E-24 133.1 10.5 83 48-130 12-94 (95)
34 2cq3_A RNA-binding protein 9; 99.8 2E-19 6.9E-24 131.8 14.0 84 48-132 11-94 (103)
35 3ex7_B RNA-binding protein 8A; 99.8 4E-20 1.4E-24 140.4 10.5 87 46-132 16-103 (126)
36 1x5t_A Splicing factor 3B subu 99.8 5E-20 1.7E-24 133.2 10.3 83 50-132 3-87 (96)
37 2d9p_A Polyadenylate-binding p 99.8 8.7E-20 3E-24 133.8 11.6 83 49-132 12-94 (103)
38 2dgv_A HnRNP M, heterogeneous 99.8 8.5E-20 2.9E-24 130.9 11.2 86 46-132 2-87 (92)
39 2x1f_A MRNA 3'-END-processing 99.8 9E-20 3.1E-24 132.1 11.4 82 51-132 1-83 (96)
40 2cph_A RNA binding motif prote 99.8 9.4E-20 3.2E-24 134.3 11.6 85 48-132 11-98 (107)
41 2la6_A RNA-binding protein FUS 99.8 9.3E-20 3.2E-24 132.7 11.1 84 46-129 7-99 (99)
42 4f25_A Polyadenylate-binding p 99.8 7.5E-20 2.6E-24 137.2 10.9 81 51-132 4-84 (115)
43 2div_A TRNA selenocysteine ass 99.8 7.1E-20 2.4E-24 133.2 10.5 85 48-132 5-95 (99)
44 1oo0_B CG8781-PA, drosophila Y 99.8 8.5E-20 2.9E-24 135.4 11.1 86 47-132 21-107 (110)
45 2dng_A Eukaryotic translation 99.8 1.8E-19 6.3E-24 132.1 12.3 83 48-132 11-94 (103)
46 1wi8_A EIF-4B, eukaryotic tran 99.8 1.3E-19 4.6E-24 133.0 11.5 82 49-132 12-95 (104)
47 2dgp_A Bruno-like 4, RNA bindi 99.8 9.5E-20 3.3E-24 134.2 10.7 85 48-132 9-97 (106)
48 3p5t_L Cleavage and polyadenyl 99.8 1.5E-20 5.3E-25 134.7 6.0 80 53-132 2-84 (90)
49 2cqi_A Nucleolysin TIAR; RNA r 99.8 3E-19 1E-23 130.9 12.9 84 48-132 11-94 (103)
50 2dhg_A TRNA selenocysteine ass 99.8 1.1E-19 3.9E-24 133.3 10.5 85 48-132 5-91 (104)
51 2dgx_A KIAA0430 protein; RRM d 99.8 2.2E-19 7.4E-24 130.2 11.5 83 48-132 5-91 (96)
52 2khc_A Testis-specific RNP-typ 99.8 1.1E-19 3.8E-24 136.4 10.2 81 49-129 37-118 (118)
53 2cpe_A RNA-binding protein EWS 99.8 1.5E-19 5.1E-24 134.7 10.7 85 48-132 11-104 (113)
54 1u6f_A Tcubp1, RNA-binding pro 99.8 2.4E-19 8.2E-24 138.4 12.1 85 48-132 38-123 (139)
55 2dgw_A Probable RNA-binding pr 99.8 3.5E-19 1.2E-23 127.6 12.0 83 48-132 6-88 (91)
56 2dh8_A DAZ-associated protein 99.8 1.3E-19 4.4E-24 133.3 9.5 84 48-132 12-96 (105)
57 1x4c_A Splicing factor, argini 99.8 5E-19 1.7E-23 131.0 12.7 80 47-132 10-94 (108)
58 2cqp_A RNA-binding protein 12; 99.8 9.9E-20 3.4E-24 132.2 8.6 83 49-131 12-95 (98)
59 3pgw_S U1-70K; protein-RNA com 99.8 4.8E-19 1.6E-23 161.4 15.2 83 50-132 100-183 (437)
60 2cpf_A RNA binding motif prote 99.8 2.2E-19 7.6E-24 130.3 10.4 83 50-132 3-89 (98)
61 2kxn_B Transformer-2 protein h 99.8 1.1E-19 3.9E-24 139.0 9.3 85 48-132 42-127 (129)
62 3ns6_A Eukaryotic translation 99.8 4.3E-20 1.5E-24 135.1 6.4 81 51-131 5-93 (100)
63 3s7r_A Heterogeneous nuclear r 99.8 4.2E-19 1.4E-23 126.0 11.3 80 48-128 7-87 (87)
64 4a8x_A RNA-binding protein wit 99.8 2.3E-19 7.9E-24 127.4 9.9 82 51-132 3-86 (88)
65 3ucg_A Polyadenylate-binding p 99.8 3.7E-19 1.3E-23 126.7 10.9 79 52-131 6-85 (89)
66 2ek1_A RNA-binding protein 12; 99.8 8.5E-20 2.9E-24 131.7 7.4 82 49-130 12-94 (95)
67 2cqg_A TDP-43, TAR DNA-binding 99.8 8.5E-19 2.9E-23 128.5 12.3 84 48-133 11-95 (103)
68 1x4a_A Splicing factor, argini 99.8 7E-19 2.4E-23 130.3 11.9 82 49-132 19-100 (109)
69 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.3E-19 1.8E-23 140.7 11.9 87 46-132 66-153 (165)
70 1s79_A Lupus LA protein; RRM, 99.8 2.4E-19 8.2E-24 132.0 9.1 80 51-131 10-89 (103)
71 3n9u_C Cleavage and polyadenyl 99.8 4E-19 1.4E-23 140.4 10.8 82 51-132 54-138 (156)
72 2dgu_A Heterogeneous nuclear r 99.8 1.1E-18 3.9E-23 127.9 12.6 81 46-133 5-85 (103)
73 1sjq_A Polypyrimidine tract-bi 99.8 3.2E-19 1.1E-23 131.4 9.5 79 49-132 13-93 (105)
74 1wg5_A Heterogeneous nuclear r 99.8 4.6E-19 1.6E-23 130.4 10.3 84 48-132 11-95 (104)
75 1wez_A HnRNP H', FTP-3, hetero 99.8 2.7E-19 9.2E-24 131.4 8.9 83 48-132 11-93 (102)
76 2rs2_A Musashi-1, RNA-binding 99.8 5.9E-19 2E-23 131.0 10.4 83 50-133 23-106 (109)
77 1p1t_A Cleavage stimulation fa 99.8 1.1E-19 3.9E-24 133.2 6.5 83 50-132 6-89 (104)
78 3r27_A HnRNP L, heterogeneous 99.8 7.6E-19 2.6E-23 128.2 10.6 79 48-131 17-97 (100)
79 2dnq_A RNA-binding protein 4B; 99.8 1.1E-18 3.7E-23 124.8 11.2 79 47-132 3-81 (90)
80 2err_A Ataxin-2-binding protei 99.8 6.4E-19 2.2E-23 130.8 10.3 83 48-131 25-107 (109)
81 1x4e_A RNA binding motif, sing 99.8 8.4E-20 2.9E-24 129.1 5.2 79 50-128 3-82 (85)
82 2dis_A Unnamed protein product 99.8 1.2E-18 4.1E-23 128.8 11.3 84 50-133 6-94 (109)
83 2db1_A Heterogeneous nuclear r 99.8 5.2E-19 1.8E-23 133.2 9.3 83 49-132 14-99 (118)
84 2cq4_A RNA binding motif prote 99.8 4.3E-19 1.5E-23 132.5 8.7 81 51-132 24-105 (114)
85 2fc9_A NCL protein; structure 99.8 1.3E-18 4.6E-23 126.9 11.1 81 49-132 12-92 (101)
86 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-18 4.4E-23 137.1 11.6 84 49-132 67-151 (158)
87 2wbr_A GW182, gawky, LD47780P; 99.8 7.6E-19 2.6E-23 124.5 9.1 74 51-129 6-79 (89)
88 2lea_A Serine/arginine-rich sp 99.8 2.4E-19 8.1E-24 138.3 7.1 85 48-132 43-128 (135)
89 1x5o_A RNA binding motif, sing 99.8 1.7E-18 5.8E-23 129.1 11.4 82 50-131 23-112 (114)
90 2cpy_A RNA-binding protein 12; 99.8 5E-19 1.7E-23 132.3 8.5 83 49-132 12-95 (114)
91 1why_A Hypothetical protein ri 99.8 1.7E-18 5.9E-23 125.5 10.9 79 49-132 14-94 (97)
92 2cq1_A PTB-like protein L; RRM 99.8 3E-18 1E-22 125.6 12.1 79 49-132 12-92 (101)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.7E-19 1.3E-23 129.9 7.1 83 48-132 15-99 (100)
94 2cpi_A CCR4-NOT transcription 99.8 6.6E-19 2.3E-23 131.1 8.5 83 50-132 13-102 (111)
95 2dgt_A RNA-binding protein 30; 99.8 2.8E-18 9.5E-23 123.2 11.5 79 47-132 5-83 (92)
96 1wex_A Hypothetical protein (r 99.8 2.5E-18 8.6E-23 126.7 11.5 79 49-132 12-92 (104)
97 2m2b_A RNA-binding protein 10; 99.8 3.8E-19 1.3E-23 136.2 7.3 83 49-132 20-109 (131)
98 1x4b_A Heterogeneous nuclear r 99.8 1.3E-18 4.3E-23 130.3 10.0 81 51-132 26-107 (116)
99 2jwn_A Embryonic polyadenylate 99.8 1.3E-18 4.6E-23 131.6 10.0 81 51-132 35-116 (124)
100 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.5E-19 1.2E-23 123.4 6.2 75 53-128 1-76 (77)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.6E-18 5.6E-23 133.5 10.5 81 48-128 59-140 (140)
102 2hgl_A HNRPF protein, heteroge 99.8 6.8E-19 2.3E-23 135.9 8.2 84 47-131 39-125 (136)
103 1x4d_A Matrin 3; structural ge 99.8 1.2E-18 4.1E-23 127.9 9.0 79 49-132 12-93 (102)
104 2mss_A Protein (musashi1); RNA 99.8 4.7E-19 1.6E-23 122.3 6.4 74 54-128 1-75 (75)
105 2dnn_A RNA-binding protein 12; 99.8 1E-18 3.5E-23 129.9 8.6 79 51-131 15-93 (109)
106 2cpx_A Hypothetical protein FL 99.8 4.5E-19 1.5E-23 132.4 6.7 84 49-132 22-106 (115)
107 2ytc_A PRE-mRNA-splicing facto 99.8 2.4E-18 8.1E-23 121.5 10.0 78 47-129 7-85 (85)
108 2cpj_A Non-POU domain-containi 99.8 2.6E-18 8.8E-23 125.0 10.4 79 49-132 12-90 (99)
109 1wel_A RNA-binding protein 12; 99.8 4E-19 1.4E-23 134.8 6.3 82 50-132 23-105 (124)
110 2a3j_A U1 small nuclear ribonu 99.8 2.6E-18 8.9E-23 131.1 10.8 84 47-132 24-111 (127)
111 2dnp_A RNA-binding protein 14; 99.8 3.8E-18 1.3E-22 122.0 11.0 78 48-132 5-82 (90)
112 2ki2_A SS-DNA binding protein 99.8 2.8E-19 9.5E-24 127.8 5.0 79 53-132 2-81 (90)
113 2ad9_A Polypyrimidine tract-bi 99.8 2.3E-18 7.8E-23 129.7 10.2 80 48-132 27-108 (119)
114 2nlw_A Eukaryotic translation 99.8 1.2E-18 3.9E-23 128.5 8.3 82 49-131 12-100 (105)
115 2fc8_A NCL protein; structure 99.8 3.1E-18 1.1E-22 125.1 10.5 81 49-132 12-93 (102)
116 2jvr_A Nucleolar protein 3; RN 99.8 1.9E-18 6.5E-23 128.8 8.9 80 49-131 25-105 (111)
117 1nu4_A U1A RNA binding domain; 99.8 1.1E-18 3.9E-23 126.2 7.5 84 47-132 3-90 (97)
118 2cqh_A IGF-II mRNA-binding pro 99.8 2.3E-18 7.9E-23 123.8 8.9 80 47-132 3-84 (93)
119 1x4g_A Nucleolysin TIAR; struc 99.8 5.1E-18 1.8E-22 125.7 10.9 78 50-132 23-100 (109)
120 2e5j_A Methenyltetrahydrofolat 99.8 4E-18 1.4E-22 123.6 9.7 80 49-132 16-95 (97)
121 2hgm_A HNRPF protein, heteroge 99.8 1.4E-18 4.8E-23 132.3 7.5 100 30-131 15-121 (126)
122 2la4_A Nuclear and cytoplasmic 99.7 3.4E-18 1.2E-22 124.8 8.8 76 50-130 25-100 (101)
123 2cpd_A Apobec-1 stimulating pr 99.7 1.4E-17 4.9E-22 121.1 12.1 77 49-132 12-90 (99)
124 3beg_B Splicing factor, argini 99.7 3.1E-18 1.1E-22 128.3 8.8 76 49-130 13-93 (115)
125 2lmi_A GRSF-1, G-rich sequence 99.7 9.4E-19 3.2E-23 129.4 5.8 83 48-131 7-92 (107)
126 2xnq_A Nuclear polyadenylated 99.7 1.2E-17 4.2E-22 121.3 11.5 77 48-131 18-95 (97)
127 2krb_A Eukaryotic translation 99.7 1.8E-18 6.3E-23 121.3 6.7 73 52-125 1-80 (81)
128 2hvz_A Splicing factor, argini 99.7 3.6E-18 1.2E-22 124.6 8.5 76 53-132 1-76 (101)
129 2kvi_A Nuclear polyadenylated 99.7 5.8E-18 2E-22 122.6 9.3 78 48-132 6-84 (96)
130 1fj7_A Nucleolin RBD1, protein 99.7 5.1E-19 1.7E-23 129.2 3.7 81 50-132 15-96 (101)
131 3lqv_A PRE-mRNA branch site pr 99.7 9.5E-18 3.2E-22 125.2 10.6 83 48-132 4-86 (115)
132 2jvo_A Nucleolar protein 3; nu 99.7 7.5E-18 2.6E-22 124.9 10.0 78 48-132 27-104 (108)
133 1x4f_A Matrin 3; structural ge 99.7 5.6E-18 1.9E-22 126.3 9.1 78 50-132 23-103 (112)
134 2hgn_A Heterogeneous nuclear r 99.7 9.9E-19 3.4E-23 135.4 4.9 82 49-132 43-124 (139)
135 4f02_A Polyadenylate-binding p 99.7 1.5E-17 5.1E-22 137.3 12.0 84 49-132 12-96 (213)
136 1fjc_A Nucleolin RBD2, protein 99.7 4.3E-18 1.5E-22 123.0 7.6 81 48-132 12-92 (96)
137 1wf1_A RNA-binding protein RAL 99.7 1.5E-17 5.2E-22 123.3 10.6 76 50-132 25-101 (110)
138 1whx_A Hypothetical protein ri 99.7 1.1E-17 3.8E-22 124.5 9.8 77 51-132 9-85 (111)
139 2dha_A FLJ20171 protein; RRM d 99.7 3.2E-18 1.1E-22 129.9 6.9 82 50-132 21-106 (123)
140 1iqt_A AUF1, heterogeneous nuc 99.7 2E-18 6.7E-23 119.1 5.1 74 54-128 1-75 (75)
141 3egn_A RNA-binding protein 40; 99.7 7.1E-18 2.4E-22 130.8 8.8 86 47-132 40-131 (143)
142 2xs2_A Deleted in azoospermia- 99.7 4.5E-18 1.5E-22 124.3 7.0 81 50-132 7-87 (102)
143 2e5g_A U6 snRNA-specific termi 99.7 2.1E-17 7.3E-22 119.0 10.4 78 49-132 5-83 (94)
144 2e44_A Insulin-like growth fac 99.7 1.8E-17 6.1E-22 119.7 9.0 82 48-132 11-93 (96)
145 1x5p_A Negative elongation fac 99.7 6.9E-17 2.4E-21 117.0 12.2 77 49-132 12-88 (97)
146 2lcw_A RNA-binding protein FUS 99.6 3.6E-19 1.2E-23 133.3 0.0 83 50-132 5-96 (116)
147 1fxl_A Paraneoplastic encephal 99.7 5.4E-17 1.8E-21 127.5 12.1 81 52-132 2-83 (167)
148 2i2y_A Fusion protein consists 99.7 2.1E-17 7.2E-22 129.2 9.6 80 48-131 69-148 (150)
149 1wg1_A KIAA1579 protein, homol 99.7 2.5E-17 8.5E-22 117.3 8.8 76 51-132 4-79 (88)
150 3md3_A Nuclear and cytoplasmic 99.7 7.9E-17 2.7E-21 126.4 12.4 82 48-129 83-165 (166)
151 2qfj_A FBP-interacting repress 99.7 8.5E-17 2.9E-21 132.0 12.1 83 50-132 123-206 (216)
152 2diu_A KIAA0430 protein; struc 99.7 6.9E-17 2.4E-21 115.6 9.9 78 48-134 4-87 (96)
153 1sjr_A Polypyrimidine tract-bi 99.7 6.8E-17 2.3E-21 127.8 10.7 82 48-132 42-125 (164)
154 1b7f_A Protein (SXL-lethal pro 99.7 5.3E-17 1.8E-21 128.0 10.1 82 51-132 2-84 (168)
155 2cq2_A Hypothetical protein LO 99.7 6E-17 2.1E-21 120.9 9.2 80 48-132 21-107 (114)
156 1l3k_A Heterogeneous nuclear r 99.7 1E-16 3.5E-21 129.6 11.0 84 48-132 9-93 (196)
157 2j8a_A Histone-lysine N-methyl 99.7 6E-17 2E-21 122.4 8.2 79 53-131 3-96 (136)
158 2yh0_A Splicing factor U2AF 65 99.7 2E-16 6.9E-21 128.0 11.8 84 49-132 111-195 (198)
159 3md3_A Nuclear and cytoplasmic 99.7 1.8E-16 6E-21 124.4 11.1 80 53-132 1-80 (166)
160 3zzy_A Polypyrimidine tract-bi 99.7 1.9E-16 6.7E-21 120.8 10.6 79 50-132 26-107 (130)
161 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-16 3.8E-21 119.5 9.2 80 48-130 4-87 (114)
162 2g4b_A Splicing factor U2AF 65 99.7 2E-16 6.7E-21 125.2 11.1 80 50-129 92-172 (172)
163 2hzc_A Splicing factor U2AF 65 99.7 1.6E-16 5.5E-21 112.4 8.8 71 50-126 4-85 (87)
164 3d2w_A TAR DNA-binding protein 99.7 1.1E-16 3.8E-21 114.4 7.9 77 48-132 7-85 (89)
165 4f02_A Polyadenylate-binding p 99.7 2E-16 7E-21 130.5 10.3 81 51-132 102-182 (213)
166 2e5i_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 118.6 10.4 75 53-132 26-103 (124)
167 1l3k_A Heterogeneous nuclear r 99.7 3.5E-16 1.2E-20 126.4 11.1 82 50-132 102-184 (196)
168 3tyt_A Heterogeneous nuclear r 99.7 3.4E-16 1.1E-20 128.8 10.8 78 51-132 3-81 (205)
169 2cjk_A Nuclear polyadenylated 99.7 1.4E-16 4.6E-21 125.6 7.9 80 51-131 86-166 (167)
170 2bz2_A Negative elongation fac 99.7 3.4E-16 1.2E-20 118.3 9.6 77 49-132 36-112 (121)
171 3nmr_A Cugbp ELAV-like family 99.7 5.1E-16 1.8E-20 122.9 10.9 80 50-129 93-175 (175)
172 1b7f_A Protein (SXL-lethal pro 99.7 7.7E-16 2.6E-20 121.2 11.6 80 49-128 86-168 (168)
173 2qfj_A FBP-interacting repress 99.7 3.6E-16 1.2E-20 128.2 9.9 81 51-131 27-108 (216)
174 1wf0_A TDP-43, TAR DNA-binding 99.7 1.4E-16 4.8E-21 113.2 6.2 77 50-132 3-79 (88)
175 2voo_A Lupus LA protein; RNA-b 99.6 7.7E-16 2.6E-20 125.5 10.7 80 52-132 109-188 (193)
176 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-15 4.2E-20 130.5 11.9 84 47-132 4-91 (282)
177 2pe8_A Splicing factor 45; RRM 99.6 2.5E-15 8.6E-20 110.7 11.9 82 50-131 6-94 (105)
178 3nmr_A Cugbp ELAV-like family 99.6 1.1E-15 3.9E-20 120.9 10.7 82 51-132 2-89 (175)
179 1fxl_A Paraneoplastic encephal 99.6 1.5E-15 5.3E-20 119.1 11.0 79 50-128 86-167 (167)
180 3u1l_A PRE-mRNA-splicing facto 99.6 7.2E-16 2.5E-20 129.4 8.6 81 48-133 130-231 (240)
181 1fje_B Nucleolin RBD12, protei 99.6 1.4E-15 4.7E-20 120.9 9.5 79 49-131 96-174 (175)
182 2cjk_A Nuclear polyadenylated 99.6 9.7E-16 3.3E-20 120.7 8.3 79 51-131 2-81 (167)
183 3smz_A Protein raver-1, ribonu 99.6 4.6E-15 1.6E-19 127.0 11.7 86 48-133 180-266 (284)
184 2adc_A Polypyrimidine tract-bi 99.6 2.3E-15 7.9E-20 125.4 9.1 80 49-132 31-111 (229)
185 2dit_A HIV TAT specific factor 99.6 1.6E-14 5.4E-19 107.4 12.4 81 49-132 12-103 (112)
186 2ghp_A U4/U6 snRNA-associated 99.6 3.7E-15 1.3E-19 128.1 10.1 82 49-131 207-291 (292)
187 3pgw_A U1-A; protein-RNA compl 99.6 9.5E-15 3.3E-19 124.9 11.3 77 49-129 204-281 (282)
188 3smz_A Protein raver-1, ribonu 99.6 1.6E-14 5.5E-19 123.6 12.0 83 50-132 93-176 (284)
189 3tyt_A Heterogeneous nuclear r 99.6 6.8E-15 2.3E-19 121.0 9.1 78 50-128 121-204 (205)
190 3sde_A Paraspeckle component 1 99.6 1.4E-14 4.6E-19 123.1 10.4 80 48-132 18-97 (261)
191 1qm9_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 120.1 7.4 78 51-132 2-80 (198)
192 1fje_B Nucleolin RBD12, protei 99.6 1.6E-15 5.4E-20 120.5 3.9 84 48-132 9-92 (175)
193 1qm9_A Polypyrimidine tract-bi 99.5 1.9E-14 6.5E-19 116.7 8.8 78 50-131 118-197 (198)
194 1jmt_A Splicing factor U2AF 35 99.5 5.9E-15 2E-19 108.5 4.9 72 57-128 20-103 (104)
195 3sde_A Paraspeckle component 1 99.5 4.5E-14 1.5E-18 119.9 10.8 83 50-132 94-180 (261)
196 2ghp_A U4/U6 snRNA-associated 99.5 3E-14 1E-18 122.4 9.5 82 51-132 116-198 (292)
197 2adc_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 117.6 10.1 79 49-131 148-228 (229)
198 3v4m_A Splicing factor U2AF 65 99.5 4.9E-14 1.7E-18 103.8 9.1 82 50-131 3-97 (105)
199 2g4b_A Splicing factor U2AF 65 99.5 5.3E-14 1.8E-18 111.1 9.6 76 51-132 3-89 (172)
200 2yh0_A Splicing factor U2AF 65 99.5 7.2E-14 2.5E-18 112.8 9.6 76 51-132 3-89 (198)
201 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.9E-13 1.3E-17 98.1 11.5 65 62-132 27-91 (100)
202 3ue2_A Poly(U)-binding-splicin 99.5 2.2E-13 7.7E-18 102.3 9.8 81 51-131 19-109 (118)
203 3tht_A Alkylated DNA repair pr 99.4 3.5E-13 1.2E-17 118.7 9.4 77 48-129 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 4.9E-12 1.7E-16 94.4 10.2 79 50-131 5-93 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 5.2E-12 1.8E-16 94.8 9.8 85 45-134 11-99 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 3.5E-11 1.2E-15 85.2 8.0 75 50-132 5-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 4.4E-10 1.5E-14 80.0 6.2 72 50-129 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 5.2E-09 1.8E-13 86.3 11.4 96 36-131 108-213 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 3.6E-07 1.2E-11 66.4 8.7 72 50-126 19-95 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 4.8E-05 1.6E-09 54.7 12.4 77 48-132 4-85 (104)
211 1wey_A Calcipressin 1; structu 98.0 1.9E-05 6.4E-10 57.0 7.5 76 51-131 4-84 (104)
212 1uw4_A UPF3X; nonsense mediate 97.8 0.00022 7.6E-09 50.3 9.9 77 53-129 2-86 (91)
213 1whv_A Poly(A)-specific ribonu 97.7 0.00018 6.2E-09 51.1 8.1 55 51-113 15-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.3 0.00062 2.1E-08 48.5 6.2 54 53-114 7-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.0 0.0047 1.6E-07 45.6 8.9 72 51-129 23-95 (119)
216 2l08_A Regulator of nonsense t 96.9 0.0018 6E-08 46.1 5.9 78 51-128 8-93 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.5 0.0013 4.3E-08 59.8 3.4 55 52-111 53-107 (464)
218 3p3d_A Nucleoporin 53; structu 95.9 0.017 5.7E-07 43.3 6.2 77 52-130 7-98 (132)
219 2kn4_A Immunoglobulin G-bindin 95.6 0.0083 2.8E-07 45.9 3.7 33 82-115 3-35 (158)
220 2i2y_A Fusion protein consists 94.1 0.011 3.8E-07 44.9 0.6 39 91-130 11-50 (150)
221 3d45_A Poly(A)-specific ribonu 91.4 0.58 2E-05 42.9 8.0 57 51-115 439-495 (507)
222 4eyt_A Telomerase associated p 86.3 4.1 0.00014 28.2 7.4 59 49-114 9-67 (129)
223 2g0c_A ATP-dependent RNA helic 82.1 4.2 0.00014 26.6 6.1 68 54-129 2-75 (76)
224 4f25_A Polyadenylate-binding p 59.7 1.9 6.5E-05 30.7 0.0 18 51-68 96-113 (115)
225 4e8u_A Putative uncharacterize 57.1 20 0.0007 27.7 5.5 50 53-104 13-73 (172)
226 3fry_A Probable copper-exporti 43.2 57 0.002 20.2 6.4 55 53-113 7-61 (73)
227 2lfv_A Protein DAMX; cell divi 43.8 6.9 0.00024 27.8 0.0 62 51-116 24-87 (106)
228 2cu1_A Mitogen-activated prote 37.2 48 0.0017 23.2 4.2 66 59-132 23-89 (103)
229 3pgw_S U1-70K; protein-RNA com 36.5 3.1 0.0001 37.2 -2.5 15 68-82 8-22 (437)
230 4bby_A Alkyldihydroxyacetoneph 36.3 24 0.00083 33.1 3.5 56 59-114 350-409 (658)
231 3lpe_A Putative transcription 34.7 94 0.0032 21.0 5.6 33 79-115 40-72 (92)
232 2l6f_A Focal adhesion kinase 1 40.0 8.7 0.0003 30.6 0.0 9 233-241 204-212 (215)
233 2kpo_A Rossmann 2X2 fold prote 33.5 15 0.0005 24.7 1.1 21 225-245 32-52 (110)
234 3uzu_A Ribosomal RNA small sub 32.4 16 0.00056 30.3 1.5 33 53-85 115-147 (279)
235 3fut_A Dimethyladenosine trans 30.8 45 0.0015 27.5 3.9 29 53-82 111-139 (271)
236 3ts2_A Protein LIN-28 homolog 28.4 8 0.00027 29.2 -1.0 28 67-101 2-29 (148)
237 1qyr_A KSGA, high level kasuga 26.0 58 0.002 26.4 3.7 29 53-81 91-119 (252)
238 2v94_A RPS24, 30S ribosomal pr 25.9 1.2E+02 0.0041 21.4 4.9 46 62-108 37-88 (107)
239 1xn9_A 30S ribosomal protein S 24.4 98 0.0033 21.6 4.1 46 62-108 28-79 (101)
240 1wvf_A 4-cresol dehydrogenase 24.4 42 0.0014 30.4 2.8 43 68-110 217-261 (520)
241 3twe_A Alpha4H; unknown functi 23.0 62 0.0021 16.2 2.0 15 227-241 2-16 (27)
242 3ftd_A Dimethyladenosine trans 22.7 61 0.0021 26.1 3.3 29 53-81 96-124 (249)
243 3pm9_A Putative oxidoreductase 22.6 97 0.0033 27.7 4.9 53 61-113 195-251 (476)
244 3uly_B Charged multivesicular 22.6 60 0.002 21.0 2.5 17 225-241 7-23 (69)
245 1ywx_A 30S ribosomal protein S 22.3 1.2E+02 0.004 21.2 4.2 45 62-107 28-78 (102)
246 3tqs_A Ribosomal RNA small sub 22.0 32 0.0011 28.1 1.4 31 54-84 98-128 (255)
247 1i4w_A Mitochondrial replicati 20.0 79 0.0027 27.2 3.5 23 53-75 143-165 (353)
No 1
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.89 E-value=6.9e-23 Score=165.30 Aligned_cols=115 Identities=46% Similarity=0.830 Sum_probs=102.2
Q ss_pred CCCCCCcccccccccCCCCCCCcchhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCC
Q 025976 12 NARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR 91 (245)
Q Consensus 12 ~~R~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~ 91 (245)
..|+++|.+++ .....|+|+.|++.. .......+.++|||+|||+.+++++|+++|++||.|+.|.|+.++++.
T Consensus 54 ~~r~~~y~~~~----~~~~~w~~d~~~~~~--~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~ 127 (177)
T 2f3j_A 54 RNRPAPYSRPK----PLPDKWQHDLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGR 127 (177)
T ss_dssp STTTCCSSSCC----CCTTCSSCSSSCSSC--CCCSSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSS
T ss_pred cCCCCCCCCCc----Ccccccccccccccc--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC
Confidence 57888888764 447899999988775 223456778999999999999999999999999999999999999899
Q ss_pred CceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 92 PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 92 ~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
++|||||+|.+.++|++||+.||++.|+++.|+|+++....
T Consensus 128 ~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 128 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp CSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred EeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 99999999999999999999999999999999999998654
No 2
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.88 E-value=2.2e-23 Score=174.82 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..++|||+||++++|+++|+++|++|| .|+.|.|+.++ +++++|||||+|.+.++|++||+.||++.|+++.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568899999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
++...
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 97653
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=3.7e-22 Score=145.99 Aligned_cols=80 Identities=34% Similarity=0.474 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
.+++|||+|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.|+.|+|++++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56899999999999999999999999999999999998 89999999999999999999999999999999999999997
Q ss_pred C
Q 025976 130 T 130 (245)
Q Consensus 130 ~ 130 (245)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 4
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=6.1e-22 Score=146.26 Aligned_cols=101 Identities=50% Similarity=0.881 Sum_probs=79.5
Q ss_pred CCCCCCCcchhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHH
Q 025976 27 TRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 106 (245)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a 106 (245)
..+..|.|+.+..... ..+...+.++|||+|||+.+++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|
T Consensus 6 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a 83 (107)
T 3ulh_A 6 QLPDKWQHDLFDSGFG--GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 83 (107)
T ss_dssp --------------------CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred CCCcccccccccCCCC--CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHH
Confidence 4467899988877653 34556788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeCCceeEEEEec
Q 025976 107 FAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 107 ~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
++||+.||+..|.++.|+|++++
T Consensus 84 ~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 84 LKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHhCCCEeCCcEEEEEEeC
Confidence 99999999999999999999985
No 5
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=1.3e-21 Score=154.19 Aligned_cols=85 Identities=29% Similarity=0.378 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34577999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998653
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=142.17 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.|+ ++.++|||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999 8999999999999999999999999999999999999998
Q ss_pred cCC
Q 025976 129 GTN 131 (245)
Q Consensus 129 ~~~ 131 (245)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 7
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=1.8e-20 Score=142.18 Aligned_cols=104 Identities=47% Similarity=0.854 Sum_probs=92.8
Q ss_pred CCCCCCcchhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHH
Q 025976 28 RNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAF 107 (245)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~ 107 (245)
....|.++.+.... ...+...+.++|||+|||+.+++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|+
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~ 90 (124)
T 2kt5_A 13 DPDKWQHDLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADAL 90 (124)
T ss_dssp CCCCCCCCCCCCCC--CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHH
T ss_pred CCccccccccccCC--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 35689888776654 2334567889999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhCCceeCCceeEEEEecCCCC
Q 025976 108 AALKRYNNVLLDGKPMKIEVVGTNAE 133 (245)
Q Consensus 108 ~Ai~~l~~~~l~g~~l~V~~a~~~~~ 133 (245)
+||+.||+..|+|+.|+|+++.....
T Consensus 91 ~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 91 KAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 99999999999999999999987653
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=133.28 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+++.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCC
Q 025976 129 GTN 131 (245)
Q Consensus 129 ~~~ 131 (245)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=135.26 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=79.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
+...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+ ||++.|+++.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 445677999999999999999999999999999999999998 89999999999999999999998 9999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2dgs_A 84 KRAEPRD 90 (99)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9998765
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=135.55 Aligned_cols=85 Identities=22% Similarity=0.358 Sum_probs=80.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34577999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++.+..
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 998765
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=134.03 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467999999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8764
No 12
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=137.36 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=80.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
+...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|+++.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345677999999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
++++...
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998664
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=9.6e-20 Score=136.17 Aligned_cols=85 Identities=20% Similarity=0.373 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 025976 128 VGTNAE 133 (245)
Q Consensus 128 a~~~~~ 133 (245)
+++...
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987764
No 14
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=138.32 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.++.++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++||+.||+..|+++.|.|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
++..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8664
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=134.46 Aligned_cols=84 Identities=21% Similarity=0.378 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
++..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=3.1e-20 Score=138.93 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
++.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 466899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
++..
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8765
No 17
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=135.51 Aligned_cols=85 Identities=27% Similarity=0.442 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++++.+++||||+|.+.++|++||+.||++.|+++.|.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87654
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=135.64 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+++..
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98765
No 19
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=6.5e-20 Score=134.81 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC---ceeEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG---KPMKIE 126 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g---~~l~V~ 126 (245)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++||+.||+..|.+ +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred EecCCCC
Q 025976 127 VVGTNAE 133 (245)
Q Consensus 127 ~a~~~~~ 133 (245)
++.+...
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987753
No 20
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=133.43 Aligned_cols=82 Identities=27% Similarity=0.378 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..++.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred Eec
Q 025976 127 VVG 129 (245)
Q Consensus 127 ~a~ 129 (245)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 21
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=135.51 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45677999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998765
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=135.80 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|.++.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998765
No 23
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=136.70 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC--eeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCc----eeCC
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE--LKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV----LLDG 120 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~----~l~g 120 (245)
....-.||||+|||+++|+++|+++|++||. |.+|.|+.|+ ++.++|||||+|.+.++|++||+.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3455689999999999999999999999995 5689999998 8999999999999999999999999985 5999
Q ss_pred ceeEEEEecC
Q 025976 121 KPMKIEVVGT 130 (245)
Q Consensus 121 ~~l~V~~a~~ 130 (245)
++|.|++|+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=135.88 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4567999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+++..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98765
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3.4e-20 Score=131.02 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3577999999999999999999999999999999999986 889999999999999999999999999999999999998
Q ss_pred ec
Q 025976 128 VG 129 (245)
Q Consensus 128 a~ 129 (245)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 26
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=138.24 Aligned_cols=101 Identities=26% Similarity=0.434 Sum_probs=86.2
Q ss_pred CCcchhhhhhhhcCCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHH
Q 025976 32 WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAAL 110 (245)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai 110 (245)
|.+.....+....-+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 6 HHHSHMAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CCCSCSSSSSCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHH
T ss_pred hhhhhhccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 333333333333334456678999999999999999999999999999999999997 8899999999999999999999
Q ss_pred HHhCCceeCCceeEEEEecCCC
Q 025976 111 KRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 111 ~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
+.||+..|.|+.|.|++++++.
T Consensus 86 ~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 86 EQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp HHHTTCCSSSSCCEEECSCSSC
T ss_pred HHcCCCEECCEEEEEEEcccCC
Confidence 9999999999999999987653
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=6.8e-21 Score=137.07 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=75.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHh-CCceeCCceeEEEEe
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKIEVV 128 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l-~~~~l~g~~l~V~~a 128 (245)
+.+|||+|||+++|+++|+++|++|| .|..|.|+.++ ++.++|||||+|.+.++|++||+.| ++..|+|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998 8999999999999999999999877 457899999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=7.1e-20 Score=128.76 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
+++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999997 899999999999999999999999999999999999999986
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
..
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.1e-20 Score=133.32 Aligned_cols=83 Identities=29% Similarity=0.374 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..++.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred EecC
Q 025976 127 VVGT 130 (245)
Q Consensus 127 ~a~~ 130 (245)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8864
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=136.04 Aligned_cols=84 Identities=25% Similarity=0.362 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|++ .|.++.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34567999999999999999999999999999999999998 899999999999999999999999998 8999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997654
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=135.56 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||++.|.|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98654
No 32
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-20 Score=136.07 Aligned_cols=85 Identities=19% Similarity=0.372 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhC------CceeCC
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYN------NVLLDG 120 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~------~~~l~g 120 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|| ++.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44577899999999999999999999999999999999998 88999999999999999999999999 999999
Q ss_pred ceeEEEEecCCC
Q 025976 121 KPMKIEVVGTNA 132 (245)
Q Consensus 121 ~~l~V~~a~~~~ 132 (245)
+.|.|.++.+..
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998765
No 33
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=133.05 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++||+.||+..|.++.|.|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567999999999999999999999999999999999999889999999999999999999999999999999999998
Q ss_pred ecC
Q 025976 128 VGT 130 (245)
Q Consensus 128 a~~ 130 (245)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=131.79 Aligned_cols=84 Identities=20% Similarity=0.402 Sum_probs=78.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.. +++||||+|.+.++|++||+.||++.|+++.|.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999988754 899999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 98775
No 35
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4e-20 Score=140.43 Aligned_cols=87 Identities=28% Similarity=0.417 Sum_probs=81.2
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 46 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
+....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+++.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3445677899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 025976 125 IEVVGTNA 132 (245)
Q Consensus 125 V~~a~~~~ 132 (245)
|+++.+..
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99998664
No 36
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=133.18 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.+.++|||+|||+++++++|+++|++||.|..| .|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 999996 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98765
No 37
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.7e-20 Score=133.78 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++||+.||+..|.++.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346789999999999999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8765
No 38
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=8.5e-20 Score=130.92 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=79.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 46 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
+++..+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++||+.||+..|+++.|+|
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345567899999999999999999999999999999999874 7788999999999999999999999999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
+++++..
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9998764
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=9e-20 Score=132.08 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
++++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 40
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=134.33 Aligned_cols=85 Identities=26% Similarity=0.362 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeC-C-CCCCceEEEEEEccHHHHHHHHHHh-CCceeCCceeE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-K-NGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMK 124 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~-tg~~~G~afV~F~~~e~a~~Ai~~l-~~~~l~g~~l~ 124 (245)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ + ++.++|||||+|.+.++|++||+.| |++.|.++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3457799999999999999999999999999999999999 5 8999999999999999999999999 99999999999
Q ss_pred EEEecCCC
Q 025976 125 IEVVGTNA 132 (245)
Q Consensus 125 V~~a~~~~ 132 (245)
|.++.+..
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998765
No 41
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=9.3e-20 Score=132.74 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=78.8
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCc
Q 025976 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV 116 (245)
Q Consensus 46 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~ 116 (245)
.++..+.++|||+|||+++++++|+++|++||.|.. |.|+.++ ++.++|||||+|.+.++|++||+.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999999 9999997 8999999999999999999999999999
Q ss_pred eeCCceeEEEEec
Q 025976 117 LLDGKPMKIEVVG 129 (245)
Q Consensus 117 ~l~g~~l~V~~a~ 129 (245)
.|.|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=7.5e-20 Score=137.15 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
..++|||+|||+++++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++||+.||++.|+|+.|.|.++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999999999998873 3789999999999999999999999999999999999876
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=133.20 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCce---
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP--- 122 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~--- 122 (245)
...+.++|||+|||+++++++|+++|++||.|. .|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345779999999999999999999999999999 99999998 8999999999999999999999999999999999
Q ss_pred -eEEEEecCCC
Q 025976 123 -MKIEVVGTNA 132 (245)
Q Consensus 123 -l~V~~a~~~~ 132 (245)
|+|.++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987653
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=8.5e-20 Score=135.40 Aligned_cols=86 Identities=26% Similarity=0.427 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
+...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||..||+..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++.+..
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9998664
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.8e-19 Score=132.10 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=77.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
+..+.++|||+|||+++++++|+++|++|+ |..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.++.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445679999999999999999999999996 9999999998 8999999999999999999999 899999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998764
No 46
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=133.05 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-C-CCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-t-g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..+.++|||+|||+++++++|+++|+.|| |..|.|+.++ + +.++|||||+|.+.++|++|| .||+..|.++.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35669999999999999999999999999 9999999998 5 899999999999999999999 999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++.+..
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998765
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=9.5e-20 Score=134.16 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCcee---CCcee
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL---DGKPM 123 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l---~g~~l 123 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 44567999999999999999999999999999999999998 799999999999999999999999999887 89999
Q ss_pred EEEEecCCC
Q 025976 124 KIEVVGTNA 132 (245)
Q Consensus 124 ~V~~a~~~~ 132 (245)
.|.++.+..
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998764
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.5e-20 Score=134.68 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
.+|||+|||+++++++|+++|++|| .|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998 99999999999999999999999999999999999999998
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 765
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=130.87 Aligned_cols=84 Identities=30% Similarity=0.289 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.. +++||||+|.+.++|++||+.||+..|.++.|.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4457799999999999999999999999999999999998743 689999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+++..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98764
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=133.30 Aligned_cols=85 Identities=21% Similarity=0.333 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCce-eCCceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL-LDGKPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~-l~g~~l~V 125 (245)
...+.++|||+|||+++++++|+++|++ ||.|..|.|+.++++.++|||||+|.+.++|++||+.||+.. |+++.|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4457799999999999999999999999 999999999999999999999999999999999999999999 99999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++.+..
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9997664
No 51
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=130.23 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 123 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l 123 (245)
+....++|||+|||+.+++++|+ ++|++||.|..|.|+.++.. ++||||+|.+.++|++||+.||+..|+|+.|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567899999999999999999 99999999999999998844 8899999999999999999999999999999
Q ss_pred EEEEecCCC
Q 025976 124 KIEVVGTNA 132 (245)
Q Consensus 124 ~V~~a~~~~ 132 (245)
+|.++++..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997664
No 52
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.1e-19 Score=136.44 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567999999999999999999999999999999999997 899999999999999999999999999999999999998
Q ss_pred ec
Q 025976 128 VG 129 (245)
Q Consensus 128 a~ 129 (245)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 53
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=134.71 Aligned_cols=85 Identities=28% Similarity=0.483 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
...+.++|||+|||+.+++++|+++|++||.|. .|.|+.++ ++.++|||||+|.+.++|++||+.||++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345779999999999999999999999999999 69999997 899999999999999999999999999999
Q ss_pred CCceeEEEEecCCC
Q 025976 119 DGKPMKIEVVGTNA 132 (245)
Q Consensus 119 ~g~~l~V~~a~~~~ 132 (245)
.++.|+|.++++..
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998765
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=138.40 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45667999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998764
No 55
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=127.60 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.....++|||+|||+.+++++|+++|+.| .|..|.|+.+.++.++|||||+|.+.++|++||+ ||+..|+++.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 44567999999999999999999999999 9999999999989999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+.+
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 56
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=133.29 Aligned_cols=84 Identities=24% Similarity=0.302 Sum_probs=78.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+. |++.|+++.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 34577999999999999999999999999999999999997 899999999999999999999988 9999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 988665
No 57
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=131.04 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC-----c
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-----K 121 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g-----~ 121 (245)
++....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.+ +
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 44556799999999999999999999999999999999865 899999999999999999999999999 9
Q ss_pred eeEEEEecCCC
Q 025976 122 PMKIEVVGTNA 132 (245)
Q Consensus 122 ~l~V~~a~~~~ 132 (245)
.|+|+++++..
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999998754
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.9e-20 Score=132.20 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.+..++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++||+.||+..|.++.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4466899999999999999999999999999887777776 889999999999999999999999999999999999999
Q ss_pred ecCC
Q 025976 128 VGTN 131 (245)
Q Consensus 128 a~~~ 131 (245)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 59
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=4.8e-19 Score=161.42 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.+.++|||+|||+.||+++|.++|++||.|+.|.|+.++ ++.++|||||+|.+.++|++||..||++.|.++.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8664
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=130.31 Aligned_cols=83 Identities=25% Similarity=0.435 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCC--C--CCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN--G--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~t--g--~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. + .+++||||+|.+.++|++||+.||+..|+++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998763 3 78999999999999999999999999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998664
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1.1e-19 Score=139.04 Aligned_cols=85 Identities=29% Similarity=0.377 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..++.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+++.|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997653
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=4.3e-20 Score=135.10 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCC------CCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC-ce
Q 025976 51 VGTKLYVSNLHP------GVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KP 122 (245)
Q Consensus 51 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g-~~ 122 (245)
..++|||+|||+ .+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999 79999999999999999999999999999999 99
Q ss_pred eEEEEecCC
Q 025976 123 MKIEVVGTN 131 (245)
Q Consensus 123 l~V~~a~~~ 131 (245)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=4.2e-19 Score=126.03 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+ +++..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44577999999999999999999999999999999999998 89999999999999999999995 58889999999998
Q ss_pred Ee
Q 025976 127 VV 128 (245)
Q Consensus 127 ~a 128 (245)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 64
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=127.41 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCC-CceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~-~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..++|||+|||+++++++|+++|++||.|..|.|+.++ ++. ++|||||+|.+.++|++|++.||+..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999999887 444 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 65
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.7e-19 Score=126.69 Aligned_cols=79 Identities=27% Similarity=0.497 Sum_probs=75.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|.++.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4899999999999999999999999999999999998 8999999999999999999999 9999999999999999876
Q ss_pred C
Q 025976 131 N 131 (245)
Q Consensus 131 ~ 131 (245)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=8.5e-20 Score=131.72 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.+..++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456899999999999999999999999999988888877 889999999999999999999999999999999999998
Q ss_pred ecC
Q 025976 128 VGT 130 (245)
Q Consensus 128 a~~ 130 (245)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 67
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.5e-19 Score=128.45 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||. +++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999997 4789999999999
Q ss_pred EecCCCC
Q 025976 127 VVGTNAE 133 (245)
Q Consensus 127 ~a~~~~~ 133 (245)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987653
No 68
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=130.28 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..+.++|||+|||+++++++|+++|++||.|..|.|..+ +.+++||||+|.+.++|++||+.||++.|+++.|.|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 346789999999999999999999999999999988654 457899999999999999999999999999999999998
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
++..
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7654
No 69
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=5.3e-19 Score=140.66 Aligned_cols=87 Identities=25% Similarity=0.412 Sum_probs=80.4
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 46 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||..||++.|.++.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3345667899999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 025976 125 IEVVGTNA 132 (245)
Q Consensus 125 V~~a~~~~ 132 (245)
|.++.+..
T Consensus 146 V~~a~~~~ 153 (165)
T 1rk8_A 146 VDWCFVKG 153 (165)
T ss_dssp EEESEECC
T ss_pred EEEecCCC
Confidence 99998765
No 70
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=131.97 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
..++|||+|||+++|+++|+++|++||.|..|.|+.++.+.++|||||+|.+.++|++||. ++++.|+|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4588999999999999999999999999999999999888999999999999999999998 899999999999998765
Q ss_pred C
Q 025976 131 N 131 (245)
Q Consensus 131 ~ 131 (245)
.
T Consensus 89 ~ 89 (103)
T 1s79_A 89 Y 89 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=140.37 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..++|||+|||+++++++|+++|+.|| .|..|.|+.|+ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 558999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97543
No 72
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.1e-18 Score=127.90 Aligned_cols=81 Identities=26% Similarity=0.363 Sum_probs=74.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 46 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 46 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
.+...+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||++.|.++.|.|
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 3455678999999999999999999999999999999887 469999999999999999999999999999999
Q ss_pred EEecCCCC
Q 025976 126 EVVGTNAE 133 (245)
Q Consensus 126 ~~a~~~~~ 133 (245)
.++++...
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 99987653
No 73
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=131.44 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCceeEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 126 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~--~~l~g~~l~V~ 126 (245)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++||+.|++ ..|.|++|.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 457799999999999999999999999999999999965 69999999999999999998864 78999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
+++.+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 998765
No 74
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=130.40 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=76.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.....++|||+|||+.+++++|+++|++||.|.. |.|+.+.++.++|||||+|.+.++|++||+. |+..|+++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456799999999999999999999999999987 8888888999999999999999999999987 9999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987543
No 75
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=131.41 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.....++|||+|||+++|+++|+++|++|| ++.|.|+.+++++++|||||+|.+.++|++|| .+|+..|+++.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 345668999999999999999999999999 45999999999999999999999999999999 5799999999999998
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87543
No 76
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=5.9e-19 Score=131.04 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 466899999999999999999999999999999999998 8999999999999999999999876 49999999999999
Q ss_pred cCCCC
Q 025976 129 GTNAE 133 (245)
Q Consensus 129 ~~~~~ 133 (245)
.+...
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87653
No 77
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=133.23 Aligned_cols=83 Identities=19% Similarity=0.514 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 355899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8765
No 78
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=7.6e-19 Score=128.22 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCce--eCCceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL--LDGKPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~--l~g~~l~V 125 (245)
..+++++|||+|||+.+|+++|+++|++||.|.+|.|+. .+|||||+|.+.++|++||+.|++.. |.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 445789999999999999999999999999999999984 47899999999999999999998764 88999999
Q ss_pred EEecCC
Q 025976 126 EVVGTN 131 (245)
Q Consensus 126 ~~a~~~ 131 (245)
++++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999765
No 79
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=124.81 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
+...+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 345678999999999999999999999999999999998 5799999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 998764
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=130.80 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=76.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
.....++|||+|||+++++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|++.||+..|+|+.|.|++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345779999999999999999999999999999999998864 3889999999999999999999999999999999999
Q ss_pred ecCC
Q 025976 128 VGTN 131 (245)
Q Consensus 128 a~~~ 131 (245)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9865
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-20 Score=129.12 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 567999999999999999999999999999999999998 8999999999999999999999999999999998877654
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=128.84 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEe-eCC-CCCCceEEEEEEccHHHHHHHHHHhC--CceeCCceeE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIH-FDK-NGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMK 124 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~--~~~l~g~~l~ 124 (245)
.+.++|||+|||+++++++|+++|+.||. |..|.|+ .++ ++.++|||||+|.+.++|++||+.|| ++.|+++.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 666 78999999999999999999999996 5999999999
Q ss_pred EEEecCCCC
Q 025976 125 IEVVGTNAE 133 (245)
Q Consensus 125 V~~a~~~~~ 133 (245)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987653
No 83
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=5.2e-19 Score=133.19 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++.+.++|||||+|.+.++|++||+ ||++.|+++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 346789999999999999999999999999 899999999989999999999999999999998 9999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++....
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986543
No 84
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.3e-19 Score=132.49 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||++.|+++.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 34899999999999999999999999999999999998 7899999999999999999999 999999999999999987
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 85
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=126.92 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..+.++|||+|||+++++++|+++|++||.| .|+.+.++.++|||||+|.+.++|++||+.||++.|.++.|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4567999999999999999999999999977 4666678899999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
++..
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 86
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.3e-18 Score=137.06 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3557899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+++..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98764
No 87
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=7.6e-19 Score=124.48 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
.+..|||+||++.+||++|+++|.+||+|.++.|.. ++|||||+|.+.++|++|++.||+.+|.++.|.|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 457899999999999999999999999999999974 68999999999999999999999999999999999885
No 88
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.4e-19 Score=138.28 Aligned_cols=85 Identities=25% Similarity=0.372 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|+|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34466899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998764
No 89
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=129.14 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee--------CCc
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL--------DGK 121 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l--------~g~ 121 (245)
...++|||+|||+++++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++||+.||+..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 466899999999999999999999999999999999999899999999999999999999999999999 577
Q ss_pred eeEEEEecCC
Q 025976 122 PMKIEVVGTN 131 (245)
Q Consensus 122 ~l~V~~a~~~ 131 (245)
+|.|.++.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998754
No 90
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=132.34 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+++++++|+++|+.||.| ..|.|+.++++.++|||||+|.+.++|++||+. |++.|+++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3466899999999999999999999999999 889999999999999999999999999999976 99999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=125.49 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC--CceeEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD--GKPMKIE 126 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~--g~~l~V~ 126 (245)
..+.++|||+|||+++++++|+++|++||.|..|.|..+ ++||||+|.+.++|++||+.||+..|. ++.|.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 346789999999999999999999999999999998854 689999999999999999999999999 9999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
+++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998764
No 92
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=125.59 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh--CCceeCCceeEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIE 126 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l--~~~~l~g~~l~V~ 126 (245)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.| ++..|.|+.|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 357799999999999999999999999999999988854 799999999999999999976 4688999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
+++...
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 998765
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=129.94 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC--CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
.....++|||+|||+++++++|+++|+.|| |..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345779999999999999999999999999 9999999987 7899999999999999999999 89999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
+++++..
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 94
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.6e-19 Score=131.09 Aligned_cols=83 Identities=28% Similarity=0.452 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEeeCC-CC---CCceEEEEEEccHHHHHHHHHHhCCceeCCce
Q 025976 50 EVGTKLYVSNLHPGVTNDDIR---ELFSEIGELKRYAIHFDK-NG---RPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 122 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~-tg---~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~ 122 (245)
.+.++|||+|||+.+++++|+ ++|++||.|..|.|+.++ ++ .++|||||+|.+.++|++||+.||++.|+++.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 999999999999999887 43 56699999999999999999999999999999
Q ss_pred eEEEEecCCC
Q 025976 123 MKIEVVGTNA 132 (245)
Q Consensus 123 l~V~~a~~~~ 132 (245)
|+|.++++..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 95
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=123.19 Aligned_cols=79 Identities=30% Similarity=0.415 Sum_probs=73.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
+...+.++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||++.|.++.|+|+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345677999999999999999999999999999999998 3499999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998664
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=126.71 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCceeEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 126 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~--~~l~g~~l~V~ 126 (245)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.|++ ..|.|+.|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 457799999999999999999999999999999998853 78999999999999999998865 56999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
+++...
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998664
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=136.24 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE--EEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCc----eeCCc
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV----LLDGK 121 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~----~l~g~ 121 (245)
....++|||+|||+++++++|+++|++||.|.. |.|+.++ ++.++|||||+|.+. +|++||..||+. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 9999999 999999999999999 999999999999 99999
Q ss_pred eeEEEEecCCC
Q 025976 122 PMKIEVVGTNA 132 (245)
Q Consensus 122 ~l~V~~a~~~~ 132 (245)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 98
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=130.30 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+. +++.|+++.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 44899999999999999999999999999999999998 899999999999999999999987 9999999999999998
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 765
No 99
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.3e-18 Score=131.60 Aligned_cols=81 Identities=31% Similarity=0.492 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||++.|+|+.|.|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999999999999997 8999999999999999999999 899999999999999987
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 100
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-19 Score=123.38 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=72.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.++ ..|+|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998 89999999999999999999999999 9999999999986
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=133.48 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999997 89999999999999999999999999999999999998
Q ss_pred Ee
Q 025976 127 VV 128 (245)
Q Consensus 127 ~a 128 (245)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 102
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=6.8e-19 Score=135.88 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=77.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 123 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l 123 (245)
+.....++|||+|||+++|+++|+++|++||. |..|.|+.++.+.++|||||+|.+.++|++||+ ||+..|+++.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34566799999999999999999999999999 889999999989999999999999999999998 99999999999
Q ss_pred EEEEecCC
Q 025976 124 KIEVVGTN 131 (245)
Q Consensus 124 ~V~~a~~~ 131 (245)
.|.++...
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 103
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=127.94 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCceeEE
Q 025976 49 IEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKI 125 (245)
Q Consensus 49 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~--~~l~g~~l~V 125 (245)
.++.++|||+|||+ .+++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++||+.||+ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 34779999999999 9999999999999999999999855 58999999999999999998885 5699999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.+++...
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 104
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4.7e-19 Score=122.30 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=70.7
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
+|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++ ||+..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998 89999999999999999999997 9999999999999864
No 105
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=129.85 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
..++|||+|||+.+++++|+++|+.| .|..|.|+.++++.++|||||+|.+.++|++|| .||+..|+++.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34789999999999999999999999 899999999999999999999999999999999 6899999999999988864
Q ss_pred C
Q 025976 131 N 131 (245)
Q Consensus 131 ~ 131 (245)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 106
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-19 Score=132.40 Aligned_cols=84 Identities=33% Similarity=0.424 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+.+++++|+++|+.||.|..|.+..+. ++.++|||||+|.+.++|++||+.||++.|.++.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467999999999999999999999999998433222222 778899999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98765
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=121.52 Aligned_cols=78 Identities=23% Similarity=0.369 Sum_probs=71.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh-CCceeCCceeEE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKI 125 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l-~~~~l~g~~l~V 125 (245)
+...+.++|||+|||+.+++++|+++|++||.|..|.|+. .++||||+|.+.++|++|++.| ++..|+|+.|+|
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456778999999999999999999999999999999985 3789999999999999999988 999999999999
Q ss_pred EEec
Q 025976 126 EVVG 129 (245)
Q Consensus 126 ~~a~ 129 (245)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=125.03 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..+.++|||+|||+.+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++||+.||++.|.++.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 456789999999999999999999999999999999844 789999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
++..
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8764
No 109
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-19 Score=134.81 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEE-EeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...++|||+|||+++++++|+++|+.||.|..+. |..+.++.++|||||+|.+.++|++||+ ||++.|+++.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4568999999999999999999999999998744 4444599999999999999999999998 9999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
....
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 110
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=131.09 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCce
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 122 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~ 122 (245)
+...+.++|||+|||+.+++++|+ ++|++||.|..|.+. +++.++|||||+|.+.++|+.||..||+..|.|+.
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 345678999999999999999876 699999999988774 46788999999999999999999999999999999
Q ss_pred eEEEEecCCC
Q 025976 123 MKIEVVGTNA 132 (245)
Q Consensus 123 l~V~~a~~~~ 132 (245)
|.|.+++...
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998765
No 111
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=121.96 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+++.|.|++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34577899999999999999999999999999999998 34999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+++..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.8e-19 Score=127.78 Aligned_cols=79 Identities=23% Similarity=0.446 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.+ |++|+..||+..|+|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 7999999999999999 99999999999999999999999876
Q ss_pred C
Q 025976 132 A 132 (245)
Q Consensus 132 ~ 132 (245)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=129.75 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~--~~l~g~~l~V 125 (245)
..+++++|||+|||+.+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++||+.|++ ..|.|++|.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 4457899999999999999999999999999999999865 79999999999999999998874 6899999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.+++...
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9998765
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=128.49 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc-
Q 025976 49 IEVGTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK- 121 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~- 121 (245)
....++|||+|||+.+ ++++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|++||..||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 3456899999999999 789999999999999999888 45889999999999999999999999999999998
Q ss_pred eeEEEEecCC
Q 025976 122 PMKIEVVGTN 131 (245)
Q Consensus 122 ~l~V~~a~~~ 131 (245)
.|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 115
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=125.10 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+++++++|+++|+.| ..|.++.++ ++.++|||||+|.+.++|++||+.||++.|.++.|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567999999999999999999999987 367788887 889999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+++..
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98764
No 116
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.9e-18 Score=128.81 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
....++|||+|||+.+++++|+++|++|| .|..|.|... .++|||||+|.+.++|++||+.||+..|+|+.|.|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34678999999999999999999999999 8999888643 4789999999999999999999999999999999999
Q ss_pred ecCC
Q 025976 128 VGTN 131 (245)
Q Consensus 128 a~~~ 131 (245)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 117
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.1e-18 Score=126.21 Aligned_cols=84 Identities=23% Similarity=0.417 Sum_probs=75.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCce
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 122 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~ 122 (245)
+..++.++|||+|||+++++++|+ ++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 345678999999999999999999 9999999999988863 5567899999999999999999999999999999
Q ss_pred eEEEEecCCC
Q 025976 123 MKIEVVGTNA 132 (245)
Q Consensus 123 l~V~~a~~~~ 132 (245)
|.|.++++..
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998765
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=123.78 Aligned_cols=80 Identities=35% Similarity=0.458 Sum_probs=71.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC-ceeCCceeE
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDGKPMK 124 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~-~~l~g~~l~ 124 (245)
+...+.++|||+|||+++++++|+++|++||. |..+.+. +++||||+|.+.++|++||+.||+ +.|+++.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 3 SGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 34567799999999999999999999999999 6655553 478999999999999999999999 999999999
Q ss_pred EEEecCCC
Q 025976 125 IEVVGTNA 132 (245)
Q Consensus 125 V~~a~~~~ 132 (245)
|+++++..
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998764
No 119
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-18 Score=125.65 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|++||+.||++.|.++.|.|.+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 46789999999999999999999999999999999865 7899999999999999999999999999999999998
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 98 ~~~ 100 (109)
T 1x4g_A 98 ESP 100 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=123.62 Aligned_cols=80 Identities=16% Similarity=0.331 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.+..++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34578999999999999999999999999997 566644 67899999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
++..
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 121
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.4e-18 Score=132.32 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=74.9
Q ss_pred CCCCcchhhhhhhhc-----CCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCee--EEEEeeCCCCCCceEEEEEEcc
Q 025976 30 FPWQHDLFEDSLRAA-----GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--RYAIHFDKNGRPSGSAEVVYAR 102 (245)
Q Consensus 30 ~~~~~~~~~~~~~~~-----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~tg~~~G~afV~F~~ 102 (245)
.+|.++++..+.... ..+.....++|||+|||+++|+++|+++|+.| .|. .|.|+.++.+.++|||||+|.+
T Consensus 15 ~~~~~~~~s~~g~~~~~~g~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~ 93 (126)
T 2hgm_A 15 VPRGSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFAS 93 (126)
T ss_dssp --------------------CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESS
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECC
Confidence 456666655544222 12334567899999999999999999999999 677 8999999989999999999999
Q ss_pred HHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 103 RSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 103 ~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
.++|++||+. ++..|+++.|.|.++...
T Consensus 94 ~e~A~~Al~~-~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 94 QELAEKALGK-HKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp TTHHHHHHTT-TTCCBTTBCCCCEEECHH
T ss_pred HHHHHHHHHH-CCCEECCEEEEEEECCHH
Confidence 9999999974 779999999999988643
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.4e-18 Score=124.77 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
...++|||+|||+++++++|+++|++||.|..|.|. .+++||||+|.+.++|++||..||+..|+|+.|+|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 457899999999999999999999999999999998 457999999999999999999999999999999999887
Q ss_pred C
Q 025976 130 T 130 (245)
Q Consensus 130 ~ 130 (245)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 123
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=121.05 Aligned_cols=77 Identities=29% Similarity=0.429 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..+.++|||+|||+.+++++|+++|++| |.|..|.+. ++||||+|.+.++|++||..||+..|.++.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567999999999999999999999999 999988775 6799999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998664
No 124
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=3.1e-18 Score=128.31 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=65.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCce-----e
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP-----M 123 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~-----l 123 (245)
....++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.||++.|+++. |
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 346689999999999999999999999999999999865 89999999999999999999999999998 5
Q ss_pred EEEEecC
Q 025976 124 KIEVVGT 130 (245)
Q Consensus 124 ~V~~a~~ 130 (245)
+|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5555443
No 125
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-19 Score=129.41 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++.+.++|||||+|.+.++|++||+ ||+..|+++.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3457799999999999999999999999998 899999999889999999999999999999998 999999999999
Q ss_pred EEEecCC
Q 025976 125 IEVVGTN 131 (245)
Q Consensus 125 V~~a~~~ 131 (245)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998754
No 126
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=1.2e-17 Score=121.30 Aligned_cols=77 Identities=21% Similarity=0.373 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..++.++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.||+..|.|+.|.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999998 99999999999999999999884 7899999999999999999999999999999999
Q ss_pred EecCC
Q 025976 127 VVGTN 131 (245)
Q Consensus 127 ~a~~~ 131 (245)
+++..
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=121.27 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc-eeE
Q 025976 52 GTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMK 124 (245)
Q Consensus 52 ~~~l~V~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~-~l~ 124 (245)
+++|||+|||+.+ ++++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|++||+.||+..|+|+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3789999999999 789999999999999999887 45889999999999999999999999999999999 887
Q ss_pred E
Q 025976 125 I 125 (245)
Q Consensus 125 V 125 (245)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=124.62 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=72.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
++|||+|||+++++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|++.||+..|.++.|.|+++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999876 68999999999999999999999999999999999998765
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.8e-18 Score=122.59 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
..++.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.++.|.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345789999999999 99999999999999999999985 6899999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 998764
No 130
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-19 Score=129.20 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
.+.++|||+|||+++++++|+++|++||.|.. .++.+. ++.++|||||+|.+.++|++||+ ||+..|.++.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999999887 555555 78999999999999999999998 9999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8664
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=9.5e-18 Score=125.24 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
+.++.++|||+|||+.+++++|+++|+.||.|..|.|+.+. .++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34577999999999999999999999999999999998654 4589999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97643
No 132
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=7.5e-18 Score=124.88 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.||+..|+|+.|.|++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34577999999999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+++..
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98764
No 133
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=126.28 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC--CceeCCceeEEE
Q 025976 50 EVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMKIE 126 (245)
Q Consensus 50 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~--~~~l~g~~l~V~ 126 (245)
.++++|||+|||++ +++++|+++|++||.|.+|.|+ ..+|||||+|.+.++|++||+.|+ ...|.|+.|.|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46799999999998 9999999999999999999998 347999999999999999999885 466999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
+++...
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 997654
No 134
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=9.9e-19 Score=135.44 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
....++|||+|||+++|+++|+++|++|| |+.|.|+.+++++++|||||+|.+.++|++|| .+|+..|+++.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 35668999999999999999999999999 77999999999999999999999999999999 78999999999999988
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7553
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.5e-17 Score=137.31 Aligned_cols=84 Identities=31% Similarity=0.381 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++.++|||||+|.+.++|++||+.||+..+.++.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999998
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87554
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=122.99 Aligned_cols=81 Identities=21% Similarity=0.423 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+.+++++|+++|+.||.|..| ..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999988765 33778899999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97664
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=1.5e-17 Score=123.29 Aligned_cols=76 Identities=25% Similarity=0.480 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...++|||+|||++ +++++|+++|++||.|..|.| +++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999 999999999999999999988 3789999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
+...
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 138
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=124.51 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
..++|||+|||+.+++++|+++|++||.|..|.|+. .++||||+|.+.++|++||+.||+..|.++.|.|+++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 458999999999999999999999999999998873 578999999999999999999999999999999999987
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 139
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=129.91 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL----KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
...++|||+|||+++|+++|+++|++||.| ..|.|+.++++.++|||||+|.+.++|++||+. |+..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356899999999999999999999999875 689999999999999999999999999999975 999999999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
..+....
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9886543
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2e-18 Score=119.06 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=70.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
+|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998 89999999999999999999997 4889999999999875
No 141
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=130.84 Aligned_cols=86 Identities=28% Similarity=0.378 Sum_probs=75.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE------EEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY------AIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v------~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
.+..+.++|||+|||+.+++++|+++|+.||.|..| .+....++.++|||||+|.+.++|++||..||+..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 345678999999999999999999999999998764 22222478899999999999999999999999999999
Q ss_pred ceeEEEEecCCC
Q 025976 121 KPMKIEVVGTNA 132 (245)
Q Consensus 121 ~~l~V~~a~~~~ 132 (245)
+.|.|.+++...
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999998654
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=4.5e-18 Score=124.31 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
...++|||+|||+++++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++||+ +++.|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45689999999999999999999999999999999999989999999999999999999997 9999999999999987
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=119.05 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
....++|||+|||+++++++|+++|++||.|..| +.++ ++. ||||+|.+.++|++||+ ||++.|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 4454 554 99999999999999999 999999999999997
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76544
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=119.72 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.....++|||+|||+++++++|+++|++||.|..| .|+.++. .+.|||+|.+.++|++||+.||+..|+++.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 33457899999999999999999999999999999 4777752 2349999999999999999999999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++.+..
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998763
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-17 Score=117.02 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..+.++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|++||+.||+..|.++.|+|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 346789999996 89999999999999999999985 56799999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 146
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=3.6e-19 Score=133.34 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
.+.++|||+|||+.+++++|+++|++||.|.. |.|+.++ ++.++|||||+|.+.++|++||+.||+..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46689999999999999999999999999998 8999997 88999999999999999999999999999999
Q ss_pred ceeEEEEecCCC
Q 025976 121 KPMKIEVVGTNA 132 (245)
Q Consensus 121 ~~l~V~~a~~~~ 132 (245)
+.|.|+++++..
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998654
No 147
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=5.4e-17 Score=127.52 Aligned_cols=81 Identities=30% Similarity=0.436 Sum_probs=77.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|.++.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999999 999999999999999999999999999999999999999876
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.1e-17 Score=129.17 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||..||+..|.++.|+|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred ecCC
Q 025976 128 VGTN 131 (245)
Q Consensus 128 a~~~ 131 (245)
+.+.
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9765
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=2.5e-17 Score=117.31 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
..++|||+|||+.+++++|+++|++| .|..|.|. .++|||||+|.+.++|++|++.||+..|.++.|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 56899999999999999999999999 99999885 5689999999999999999999999999999999999976
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.9e-17 Score=126.42 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
...+.++|||+|||+.+++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|+..||+..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 45567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Eec
Q 025976 127 VVG 129 (245)
Q Consensus 127 ~a~ 129 (245)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=8.5e-17 Score=131.96 Aligned_cols=83 Identities=22% Similarity=0.418 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...++|||.|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 356899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8765
No 152
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=115.55 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=68.3
Q ss_pred CCCCCCE-EEEcCCCCCCcHHH----HHHHhhcC-CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc
Q 025976 48 GIEVGTK-LYVSNLHPGVTNDD----IRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 121 (245)
Q Consensus 48 ~~~~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~ 121 (245)
..+++.| |||.|||+.+++++ |+++|++| |+|..| ++ |+|||+|.+.++|++|++.|++..|.|+
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 3445666 99999999999988 55899999 599987 22 9999999999999999999999999999
Q ss_pred eeEEEEecCCCCC
Q 025976 122 PMKIEVVGTNAEI 134 (245)
Q Consensus 122 ~l~V~~a~~~~~~ 134 (245)
+|+|.+++.....
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999887643
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=6.8e-17 Score=127.82 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC--ceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g--~~l~V 125 (245)
+.....+|||+||++.+++++|+++|++||.|.+|.|... ..++||||+|.+.++|++|++.||+..|.+ +.|+|
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3445567899999999999999999999999999998654 357899999999999999999999999966 99999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
+++++..
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=5.3e-17 Score=127.95 Aligned_cols=82 Identities=26% Similarity=0.352 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.|++..|.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999987 88999999999999999999999999999999999999998
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 155
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=120.89 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=71.2
Q ss_pred CCCCCCEEEE--cCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee-----CC
Q 025976 48 GIEVGTKLYV--SNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL-----DG 120 (245)
Q Consensus 48 ~~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l-----~g 120 (245)
...+.++||| +||++.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.||+..| .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 4456789999 77999999999999999999999988863 378999999999999999999999998 68
Q ss_pred ceeEEEEecCCC
Q 025976 121 KPMKIEVVGTNA 132 (245)
Q Consensus 121 ~~l~V~~a~~~~ 132 (245)
++|.|.++..-+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 899999987544
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1e-16 Score=129.56 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+. ++..|.++.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 44567999999999999999999999999999999999998 899999999999999999999965 8999999999999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987654
No 157
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6e-17 Score=122.36 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=71.6
Q ss_pred CEEEEcCC----CCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEcc----HHH----HHHHHH--HhCCce
Q 025976 53 TKLYVSNL----HPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYAR----RSD----AFAALK--RYNNVL 117 (245)
Q Consensus 53 ~~l~V~nL----p~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~----~e~----a~~Ai~--~l~~~~ 117 (245)
+.|||+|| |+.+++++|+++|++||+|.+|.++.|+ |+.++|||||+|.+ +++ |.+||. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999 99999999999995 333 888988 789999
Q ss_pred eCCceeEEEEecCC
Q 025976 118 LDGKPMKIEVVGTN 131 (245)
Q Consensus 118 l~g~~l~V~~a~~~ 131 (245)
|+|+.|+|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=2e-16 Score=127.99 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+.+++++|+++|++||.|..|.|..++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3577999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.8e-16 Score=124.41 Aligned_cols=80 Identities=29% Similarity=0.363 Sum_probs=75.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++|++.||+..|.++.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999988899999999999999999999999999999999999987654
No 160
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=1.9e-16 Score=120.75 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceE-EEEEEccHHHHHHHHHHhCCceeCC--ceeEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS-AEVVYARRSDAFAALKRYNNVLLDG--KPMKIE 126 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~-afV~F~~~e~a~~Ai~~l~~~~l~g--~~l~V~ 126 (245)
.+-..|||+||++.+|+++|+++|++||.|.+|.|... .++| |||+|.+.++|++|++.||+..|.+ +.|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34466789999999999999999999999999988753 2577 9999999999999999999999988 899999
Q ss_pred EecCCC
Q 025976 127 VVGTNA 132 (245)
Q Consensus 127 ~a~~~~ 132 (245)
++++..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998654
No 161
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=119.49 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=69.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-C---CCCceEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N---GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 123 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-t---g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l 123 (245)
.....++|||+|||+++++++|+++|++||.|. +.++.++ + +.++|||||+|.+.++|++||+.|+ .++|+.|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345678999999999999999999999999999 8887777 5 7999999999999999999999883 4778877
Q ss_pred EEEEecC
Q 025976 124 KIEVVGT 130 (245)
Q Consensus 124 ~V~~a~~ 130 (245)
.+..+..
T Consensus 81 ~~~~~~~ 87 (114)
T 2dnl_A 81 LCVSSPT 87 (114)
T ss_dssp EEECCSS
T ss_pred EeccCCC
Confidence 7765443
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=2e-16 Score=125.24 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...++|||+|||+.+++++|+++|++||.|..|.|..++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 446899999999999999999999999999999999997 8999999999999999999999999999999999999987
Q ss_pred c
Q 025976 129 G 129 (245)
Q Consensus 129 ~ 129 (245)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=1.6e-16 Score=112.39 Aligned_cols=71 Identities=21% Similarity=0.454 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
.+.++|||+|||+++++++|+++|++| | .|..|.+..+ +|||||+|.+.++|++|+ .||+..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 456899999999999999999999999 8 8999988844 799999999999999999 9999999
Q ss_pred CCceeEEE
Q 025976 119 DGKPMKIE 126 (245)
Q Consensus 119 ~g~~l~V~ 126 (245)
+|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999987
No 164
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=114.44 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=62.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCceeEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKI 125 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~--~~l~g~~l~V 125 (245)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ |++ +.+.++.|.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 3457799999999999999999999999999999999864 68999999999999884 344 4456999999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++.+..
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987654
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2e-16 Score=130.45 Aligned_cols=81 Identities=19% Similarity=0.337 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~ 130 (245)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|++||+.||++.|+|+.|.|.++.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457899999999999999999999999999999998864 3689999999999999999999999999999999999976
Q ss_pred CC
Q 025976 131 NA 132 (245)
Q Consensus 131 ~~ 132 (245)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.6e-16 Score=118.58 Aligned_cols=75 Identities=21% Similarity=0.178 Sum_probs=67.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceE-EEEEEccHHHHHHHHHHhCCceeCC--ceeEEEEec
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS-AEVVYARRSDAFAALKRYNNVLLDG--KPMKIEVVG 129 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~-afV~F~~~e~a~~Ai~~l~~~~l~g--~~l~V~~a~ 129 (245)
..|||+||++.+++++|+++|++||.|.+|.|.. + .|| |||+|.+.++|+.|++.||+..|.+ +.|+|++++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4468999999999999999999999999999864 2 276 9999999999999999999999987 589999998
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=3.5e-16 Score=126.38 Aligned_cols=82 Identities=15% Similarity=0.296 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...++|||.|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||.. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 356899999999999999999999999999999999998 899999999999999999999976 899999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 8765
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=3.4e-16 Score=128.83 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=72.5
Q ss_pred CCCEEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLH-PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
++++|||+||| +.+++++|+++|++||.|.+|.|+.+ .+|||||+|.+.++|++||+.||+..|.|+.|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 57899999999 89999999999999999999999865 37899999999999999999999999999999999987
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 554
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.4e-16 Score=125.59 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++ +++..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45789999999999999999999999999999999997 89999999999999999999997 89999999999999997
Q ss_pred CC
Q 025976 130 TN 131 (245)
Q Consensus 130 ~~ 131 (245)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=3.4e-16 Score=118.32 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
..+.++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|++||+.||+..|.++.|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 456799999996 69999999999999999999986 56899999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=5.1e-16 Score=122.91 Aligned_cols=80 Identities=25% Similarity=0.393 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC---CceeEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMKIE 126 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~---g~~l~V~ 126 (245)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++|++.||+..+. +++|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3568999999999999999999999999999999999999999999999999999999999999998776 4999999
Q ss_pred Eec
Q 025976 127 VVG 129 (245)
Q Consensus 127 ~a~ 129 (245)
++.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=7.7e-16 Score=121.23 Aligned_cols=80 Identities=35% Similarity=0.601 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC--ceeEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKI 125 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g--~~l~V 125 (245)
..+.++|||.|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.||+..|.+ ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999999999999988 99999
Q ss_pred EEe
Q 025976 126 EVV 128 (245)
Q Consensus 126 ~~a 128 (245)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=3.6e-16 Score=128.21 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.++.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45899999999999999999999999999999999998 89999999999999999999999999999999999998776
Q ss_pred CC
Q 025976 130 TN 131 (245)
Q Consensus 130 ~~ 131 (245)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=113.25 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+. ..+.+.++.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 46799999999999999999999999999999998864 68999999999999986542 2356689999999887
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=7.7e-16 Score=125.54 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCC
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
.++|||+|||+.+++++|+++|++||.|..|.|+.+.++.++|||||+|.+.++|++||..+ +..|+|+.|.|.+++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 48999999999999999999999999999999999988999999999999999999999765 46999999999987754
Q ss_pred C
Q 025976 132 A 132 (245)
Q Consensus 132 ~ 132 (245)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=1.2e-15 Score=130.48 Aligned_cols=84 Identities=23% Similarity=0.422 Sum_probs=76.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCce
Q 025976 47 SGIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 122 (245)
Q Consensus 47 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~ 122 (245)
+...+.++|||+|||+.+++++|+ ++|+.||.|..|.|+. ++.++|||||+|.+.++|++||+.||+..|.++.
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 345678999999999999999976 8999999999998875 6788999999999999999999999999999999
Q ss_pred eEEEEecCCC
Q 025976 123 MKIEVVGTNA 132 (245)
Q Consensus 123 l~V~~a~~~~ 132 (245)
|+|.+++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=2.5e-15 Score=110.75 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCC-----CCcHHHHHHHhhcCCCeeEEEEeeCC--CCCCceEEEEEEccHHHHHHHHHHhCCceeCCce
Q 025976 50 EVGTKLYVSNLHP-----GVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 122 (245)
Q Consensus 50 ~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~--tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~ 122 (245)
.++++|+|.||.. ..++++|+++|++||.|.+|.|+.++ ++.++||+||+|.+.++|++|++.||+..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 23789999999999999999999986 3688999999999999999999999999999999
Q ss_pred eEEEEecCC
Q 025976 123 MKIEVVGTN 131 (245)
Q Consensus 123 l~V~~a~~~ 131 (245)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998653
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1.1e-15 Score=120.89 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CC--CCceEEEEEEccHHHHHHHHHHhCCceeC---CceeE
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMK 124 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg--~~~G~afV~F~~~e~a~~Ai~~l~~~~l~---g~~l~ 124 (245)
..++|||+|||+++++++|+++|++||.|..|.|+.++ ++ .++|||||+|.+.++|++|++.||+..+. .+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998 54 88999999999999999999999998776 67788
Q ss_pred EEEecCCC
Q 025976 125 IEVVGTNA 132 (245)
Q Consensus 125 V~~a~~~~ 132 (245)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776554
No 179
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1.5e-15 Score=119.09 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCce--eEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP--MKIE 126 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~--l~V~ 126 (245)
...++|||.|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 356899999999999999999999999999999999998 8899999999999999999999999999999975 7777
Q ss_pred Ee
Q 025976 127 VV 128 (245)
Q Consensus 127 ~a 128 (245)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=7.2e-16 Score=129.37 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=71.5
Q ss_pred CCCCCCEEEEcCCCCCC---------cHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCcee
Q 025976 48 GIEVGTKLYVSNLHPGV---------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 118 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l 118 (245)
.....++|||+||+..+ ++++|+++|++||+|..|.|+. ++|||||+|.+.++|+.|++.|++..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 35678999999999998 7999999999999999999984 479999999999999999999999999
Q ss_pred ------------CCceeEEEEecCCCC
Q 025976 119 ------------DGKPMKIEVVGTNAE 133 (245)
Q Consensus 119 ------------~g~~l~V~~a~~~~~ 133 (245)
.++.|.|.|++..+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987653
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.4e-15 Score=120.92 Aligned_cols=79 Identities=22% Similarity=0.436 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
....++|||.|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 3456899999999999999999999999988755 558889999999999999999999999999999999999999
Q ss_pred cCC
Q 025976 129 GTN 131 (245)
Q Consensus 129 ~~~ 131 (245)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=9.7e-16 Score=120.66 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
+.++|||+|||+++|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++. .+.|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 45899999999999999999999999999999999998 899999999999999999999974 578999999998876
Q ss_pred CC
Q 025976 130 TN 131 (245)
Q Consensus 130 ~~ 131 (245)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=4.6e-15 Score=127.03 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCC-cHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 025976 48 GIEVGTKLYVSNLHPGV-TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 126 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~-te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~ 126 (245)
.....++|||.|||+.+ ++++|+++|+.||.|..|.|+.+.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999995 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 025976 127 VVGTNAE 133 (245)
Q Consensus 127 ~a~~~~~ 133 (245)
++.+...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987753
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=2.3e-15 Score=125.44 Aligned_cols=80 Identities=33% Similarity=0.417 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 49 IEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
..+.++|||+|||+ .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|++||+.||+..|.++.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45779999999999 99999999999999999999999875 68999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+....
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 87654
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-14 Score=107.41 Aligned_cols=81 Identities=16% Similarity=0.382 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCc-----------HHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCce
Q 025976 49 IEVGTKLYVSNLHPGVT-----------NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 117 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~ 117 (245)
..++++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++||..||+..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 35679999999954432 5899999999999999966 554 378999999999999999999999999
Q ss_pred eCCceeEEEEecCCC
Q 025976 118 LDGKPMKIEVVGTNA 132 (245)
Q Consensus 118 l~g~~l~V~~a~~~~ 132 (245)
|+++.|.|.++.+..
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999997654
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=3.7e-15 Score=128.12 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeCCC--CCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 49 IEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKN--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~t--g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
....++|||.|||+. +++++|+++|+.||.|..|.|+.+.. +.++|||||+|.+.++|.+|+ .||+..|.|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999999885 999999999999999999999 99999999999999
Q ss_pred EEecCC
Q 025976 126 EVVGTN 131 (245)
Q Consensus 126 ~~a~~~ 131 (245)
.++.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999865
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=9.5e-15 Score=124.92 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CceeEEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 127 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~-g~~l~V~~ 127 (245)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|++||+.||+..|. ++.|+|.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3467899999999999999999999999999999999654 589999999999999999999999999 99999999
Q ss_pred ec
Q 025976 128 VG 129 (245)
Q Consensus 128 a~ 129 (245)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=1.6e-14 Score=123.61 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEe
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 128 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a 128 (245)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..||+..|.++.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025976 129 GTNA 132 (245)
Q Consensus 129 ~~~~ 132 (245)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7654
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=6.8e-15 Score=120.98 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCe--eEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc----ee
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL--KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK----PM 123 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i--~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~----~l 123 (245)
++.++|||+|||+.+++++|+++|++||.| ..|.|+.++ +..+|||||+|.+.++|.+||..||+..|.+. ++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 467899999999999999999999999999 889888776 45569999999999999999999999999887 56
Q ss_pred EEEEe
Q 025976 124 KIEVV 128 (245)
Q Consensus 124 ~V~~a 128 (245)
.|.++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66664
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=1.4e-14 Score=123.14 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++|||||+|.+.++|++|+..||+..|.++.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345668999999999999999999999999999999974 479999999999999999999999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+.+..
T Consensus 93 a~~~~ 97 (261)
T 3sde_A 93 ATHGA 97 (261)
T ss_dssp CCCSS
T ss_pred cccCC
Confidence 87643
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=120.07 Aligned_cols=78 Identities=33% Similarity=0.446 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
.+++|||+|||+ .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|++|++.||+..|.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 358999999999 99999999999999999999998775 6899999999999999999999999999999999988
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=1.6e-15 Score=120.55 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=72.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
...+.++|||+|||+++++++|+++|..||.|..+.+....++.++|||||+|.+.++|++|| .||+..|.++.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 456789999999999999999999999999876633333337788999999999999999999 5999999999999999
Q ss_pred ecCCC
Q 025976 128 VGTNA 132 (245)
Q Consensus 128 a~~~~ 132 (245)
+....
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=116.69 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CceeEEEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 127 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~-g~~l~V~~ 127 (245)
.+.++|||.|||+.+++++|+++|+.|| .|..|.|+.+ .+|||||+|.+.++|++|+..||+..|. ++.|.|.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 4679999999999999999999999999 9999998754 2689999999999999999999999999 99999999
Q ss_pred ecCC
Q 025976 128 VGTN 131 (245)
Q Consensus 128 a~~~ 131 (245)
+++.
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9764
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=5.9e-15 Score=108.51 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=64.1
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 57 VSNLHPGVTNDDIRELF------------SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 57 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
+.+|++.+++++|+++| ++||.|.+|.|+.+.++.++|||||+|.+.++|++|+..||+..++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55667777777776666 999999999999888888999999999999999999999999999999999
Q ss_pred EEEe
Q 025976 125 IEVV 128 (245)
Q Consensus 125 V~~a 128 (245)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=4.5e-14 Score=119.91 Aligned_cols=83 Identities=29% Similarity=0.454 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC-CceeC---CceeEE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN-NVLLD---GKPMKI 125 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~-~~~l~---g~~l~V 125 (245)
.+.++|||+|||+.+|+++|+++|+.||.|..|.|+.+.++.++|||||+|.+.++|.+||..|| +..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999995 45554 899999
Q ss_pred EEecCCC
Q 025976 126 EVVGTNA 132 (245)
Q Consensus 126 ~~a~~~~ 132 (245)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987653
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=3e-14 Score=122.41 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~ 129 (245)
..++|||+|||+.+++++|+++|+.|| .|..|.|+.++.+.++|||||+|.+.++|++|+..||+..|.++.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999998888899999999999999999999999999999999999987
Q ss_pred CCC
Q 025976 130 TNA 132 (245)
Q Consensus 130 ~~~ 132 (245)
+..
T Consensus 196 ~~~ 198 (292)
T 2ghp_A 196 PLE 198 (292)
T ss_dssp CC-
T ss_pred CCc
Confidence 654
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=4.4e-14 Score=117.64 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CceeEEE
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIE 126 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~-g~~l~V~ 126 (245)
..+.++|||.|||+.+++++|+++|+.|| .|..|.|+.+ .++||||+|.+.++|++|++.||+..|. ++.|.|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 34679999999999999999999999999 9999998653 3689999999999999999999999999 9999999
Q ss_pred EecCC
Q 025976 127 VVGTN 131 (245)
Q Consensus 127 ~a~~~ 131 (245)
++++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99764
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=4.9e-14 Score=103.78 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=71.0
Q ss_pred CCCCEEEEcCC--CCCC--------cHHHHHHHhhcCCCeeEEEEeeCCC---CCCceEEEEEEccHHHHHHHHHHhCCc
Q 025976 50 EVGTKLYVSNL--HPGV--------TNDDIRELFSEIGELKRYAIHFDKN---GRPSGSAEVVYARRSDAFAALKRYNNV 116 (245)
Q Consensus 50 ~~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~i~~v~i~~~~t---g~~~G~afV~F~~~e~a~~Ai~~l~~~ 116 (245)
.+++.|.|.|+ |..+ .+++|+++|++||.|.+|.|+.++. +.++||+||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36788999998 3333 2368999999999999999998873 367999999999999999999999999
Q ss_pred eeCCceeEEEEecCC
Q 025976 117 LLDGKPMKIEVVGTN 131 (245)
Q Consensus 117 ~l~g~~l~V~~a~~~ 131 (245)
.++|+.|.|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998643
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=5.3e-14 Score=111.11 Aligned_cols=76 Identities=18% Similarity=0.392 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 119 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~ 119 (245)
+.++|||+|||+.+|+++|+++|++| | .|..+.+. .++|||||+|.+.++|++|+ .||+..|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 56899999999999999999999999 6 67777776 44799999999999999999 89999999
Q ss_pred CceeEEEEecCCC
Q 025976 120 GKPMKIEVVGTNA 132 (245)
Q Consensus 120 g~~l~V~~a~~~~ 132 (245)
++.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ 89 (172)
T ss_dssp TEECEEECCSSCC
T ss_pred CceeeecCCcccC
Confidence 9999999876543
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=7.2e-14 Score=112.85 Aligned_cols=76 Identities=18% Similarity=0.404 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 119 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~ 119 (245)
..++|||+|||+.+++++|+++|+.| | .|..+.+. .++|||||+|.+.++|++|| .||+..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 56666554 55899999999999999999 89999999
Q ss_pred CceeEEEEecCCC
Q 025976 120 GKPMKIEVVGTNA 132 (245)
Q Consensus 120 g~~l~V~~a~~~~ 132 (245)
++.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999876543
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.9e-13 Score=98.05 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=57.6
Q ss_pred CCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 62 PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 62 ~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|+.||+.++ .+.+++|+|.+++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCC
Confidence 568999999999999999999988 3678999999999999999998754 4679999999988765
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=2.2e-13 Score=102.29 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCC--C---CcHHHHHHHhhcCCCeeEEEEeeCC-C----CCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 51 VGTKLYVSNLHP--G---VTNDDIRELFSEIGELKRYAIHFDK-N----GRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 51 ~~~~l~V~nLp~--~---~te~~L~~~F~~~G~i~~v~i~~~~-t----g~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
++++|+|.|+-. + -.+++|+++|++||.|.+|.|+.++ + +.++||+||+|.+.++|++|++.||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 679999999832 1 2468999999999999999999876 2 4567999999999999999999999999999
Q ss_pred ceeEEEEecCC
Q 025976 121 KPMKIEVVGTN 131 (245)
Q Consensus 121 ~~l~V~~a~~~ 131 (245)
+.|.|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=3.5e-13 Score=118.68 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=65.8
Q ss_pred CCCCCCEEEEcC--CCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC---Cc-
Q 025976 48 GIEVGTKLYVSN--LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GK- 121 (245)
Q Consensus 48 ~~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~---g~- 121 (245)
...++.+|||+| |++.+|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++||+.||+..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 356789999999 578999999999999999999887753 4799999999999999999999998883 34
Q ss_pred -eeEEEEec
Q 025976 122 -PMKIEVVG 129 (245)
Q Consensus 122 -~l~V~~a~ 129 (245)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 56666663
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.35 E-value=4.9e-12 Score=94.35 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCCC----------cHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 025976 50 EVGTKLYVSNLHPGV----------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 119 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~ 119 (245)
.+++.|.|.|+=... .+++|+++|++||.|.+|.|..+. .+||+||+|.+.++|++|++.||+..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467789999983211 235789999999999999886553 5899999999999999999999999999
Q ss_pred CceeEEEEecCC
Q 025976 120 GKPMKIEVVGTN 131 (245)
Q Consensus 120 g~~l~V~~a~~~ 131 (245)
|+.|.|.++...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998654
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.2e-12 Score=94.79 Aligned_cols=85 Identities=24% Similarity=0.289 Sum_probs=75.1
Q ss_pred CCCCCCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEcc-HHHHHHHHHHhC--CceeCC
Q 025976 45 GISGIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR-RSDAFAALKRYN--NVLLDG 120 (245)
Q Consensus 45 ~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~-~e~a~~Ai~~l~--~~~l~g 120 (245)
++...++++.|||+||++. +++++|+++|++||+|.+|.+..+.+ .|||.|.+ +++|+.|+..|| +..|++
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 5567789999999999999 99999999999999999999987763 59999999 899999999995 688999
Q ss_pred ceeEEEEecCCCCC
Q 025976 121 KPMKIEVVGTNAEI 134 (245)
Q Consensus 121 ~~l~V~~a~~~~~~ 134 (245)
..+++++.....+.
T Consensus 86 ~~~~~evL~GeeE~ 99 (121)
T 1owx_A 86 KEVTWEVLEGEVEK 99 (121)
T ss_dssp SSEEEEECCHHHHH
T ss_pred cEEEEEECCCHHHH
Confidence 99999988765543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.5e-11 Score=85.17 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=63.4
Q ss_pred CCCCEEEEcCCCC----CCcH----HHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCc
Q 025976 50 EVGTKLYVSNLHP----GVTN----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 121 (245)
Q Consensus 50 ~~~~~l~V~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~ 121 (245)
++..||+|.-++. +... .+|.+.|++||.|..++|..++ +||+|.+.++|.+||+ ||+..|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4567788877662 2222 5788999999999999999764 8999999999999997 999999999
Q ss_pred eeEEEEecCCC
Q 025976 122 PMKIEVVGTNA 132 (245)
Q Consensus 122 ~l~V~~a~~~~ 132 (245)
.|+|.++++..
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999998775
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=4.4e-10 Score=79.95 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=61.5
Q ss_pred CCCCEEEEcCCCCC------CcH---HHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 025976 50 EVGTKLYVSNLHPG------VTN---DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 120 (245)
Q Consensus 50 ~~~~~l~V~nLp~~------~te---~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g 120 (245)
++..||+|.-++.. ..+ .+|.+.|++||+|..|+|..++ +||+|.+.++|.+||+ ||+.+|++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 56788999888643 222 4688999999999999999774 9999999999999997 99999999
Q ss_pred ceeEEEEec
Q 025976 121 KPMKIEVVG 129 (245)
Q Consensus 121 ~~l~V~~a~ 129 (245)
+.|+|.+..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999764
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=5.2e-09 Score=86.32 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=73.2
Q ss_pred hhhhhhhhcCCCCCCCCCEEEEcCCC-----CCCcHHHHHHHhhcCCCeeEEEEeeCC-----CCCCceEEEEEEccHHH
Q 025976 36 LFEDSLRAAGISGIEVGTKLYVSNLH-----PGVTNDDIRELFSEIGELKRYAIHFDK-----NGRPSGSAEVVYARRSD 105 (245)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~l~V~nLp-----~~~te~~L~~~F~~~G~i~~v~i~~~~-----tg~~~G~afV~F~~~e~ 105 (245)
.+.+.....-.........+.+.|+- ..-.+++|.+.|++||.|..|.|+.+. ++.++|++||+|.+.++
T Consensus 108 ~l~~~l~~~l~~~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~ 187 (222)
T 3dxb_A 108 QLKEFLDANLAGSAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASE 187 (222)
T ss_dssp HHHHHHHHHSCCSCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHH
T ss_pred HHHHHHHhhccccccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHH
Confidence 33344333333334445566666652 234567899999999999999998554 44889999999999999
Q ss_pred HHHHHHHhCCceeCCceeEEEEecCC
Q 025976 106 AFAALKRYNNVLLDGKPMKIEVVGTN 131 (245)
Q Consensus 106 a~~Ai~~l~~~~l~g~~l~V~~a~~~ 131 (245)
|++|+..||+..+.|+.|.|.+....
T Consensus 188 a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 188 THKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHhcCceECCeEEEEEEcCHH
Confidence 99999999999999999999998643
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.6e-07 Score=66.38 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=65.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC-----CCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 025976 50 EVGTKLYVSNLHPGVTNDDIRELFSEI-----GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 124 (245)
Q Consensus 50 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~ 124 (245)
+..++|-|-|||..++++.|+.|++.+ |.|..|.+..|- +-|+|+|.+...|-+|.-.|++.+|.++.|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 446889999999999999999999999 999999998763 4599999999999999999999999999999
Q ss_pred EE
Q 025976 125 IE 126 (245)
Q Consensus 125 V~ 126 (245)
|-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 86
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=4.8e-05 Score=54.66 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=63.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhc-----CCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCce
Q 025976 48 GIEVGTKLYVSNLHPGVTNDDIRELFSE-----IGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 122 (245)
Q Consensus 48 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-----~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~ 122 (245)
.....++|.|.|||+.+.++.|.-+|+. =|+|..|.... .-|+|+|.+.+.|++.++. ..+.|++..
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 3456789999999999999999999976 26888887763 4699999999999998853 478999999
Q ss_pred eEEEEecCCC
Q 025976 123 MKIEVVGTNA 132 (245)
Q Consensus 123 l~V~~a~~~~ 132 (245)
|.|....+..
T Consensus 76 LsV~P~~~~~ 85 (104)
T 2dhx_A 76 LSLRPAPPRA 85 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEcCCCCC
Confidence 9998765554
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=1.9e-05 Score=56.99 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=63.4
Q ss_pred CCCEEEEcCCCCCCcH-----HHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 025976 51 VGTKLYVSNLHPGVTN-----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 125 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te-----~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V 125 (245)
-.++|+|.||+.++-. +.++++|..|+++....+... -.=..|.|.++++|.+|-..||+..+.|+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3478999999876521 568999999999988777733 234799999999999999999999999999999
Q ss_pred EEecCC
Q 025976 126 EVVGTN 131 (245)
Q Consensus 126 ~~a~~~ 131 (245)
-++++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998844
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.81 E-value=0.00022 Score=50.34 Aligned_cols=77 Identities=14% Similarity=0.278 Sum_probs=60.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CC--CCceEEEEEEccHHHHHHHHHHhCCceeCCc-----eeE
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGK-----PMK 124 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg--~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~-----~l~ 124 (245)
++|.|.+||+.+||+++.+.+..+..+.....+..+ +. ..-.-|||.|.+.+++....+.++++.+.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 579999999999999999999988877766666555 21 2335699999999999999999999887543 234
Q ss_pred EEEec
Q 025976 125 IEVVG 129 (245)
Q Consensus 125 V~~a~ 129 (245)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55553
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.71 E-value=0.00018 Score=51.07 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 113 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l 113 (245)
....++| .+|.+....||.++|+.||.|. |..+-|. .|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 3455666 9999999999999999998544 6666653 6999999999999999866
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.28 E-value=0.00062 Score=48.47 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=45.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~ 114 (245)
..++| ++|.+....||..+|+.||. ..|..+-|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 44566 99999999999999999984 456777663 69999999999999998774
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.00 E-value=0.0047 Score=45.57 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=56.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC-ceeEEEEec
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KPMKIEVVG 129 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g-~~l~V~~a~ 129 (245)
..+-|.|-+.|+.. ...|...|++||.|.+.... ....+-.|.|.+..+|++||. .|+..|.+ ..|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 34778888999874 56778899999999987662 224589999999999999996 59999985 566676654
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.94 E-value=0.0018 Score=46.09 Aligned_cols=78 Identities=13% Similarity=0.249 Sum_probs=54.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CC--CCceEEEEEEccHHHHHHHHHHhCCceeCCc-----e
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGK-----P 122 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg--~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~-----~ 122 (245)
.+-+|.|..||+.+||+++.+.++.+=++.....+..+ +- ..-.-|||.|.+.+++....+.+++..+.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 34679999999999999998888765444332222222 11 1123589999999999999999999887543 3
Q ss_pred eEEEEe
Q 025976 123 MKIEVV 128 (245)
Q Consensus 123 l~V~~a 128 (245)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445555
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.0013 Score=59.84 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHH
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 111 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~ 111 (245)
.++|||. +|..+++.+|.++|++||+|.++.+..++ .-||.|||.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 3889997 89999999999999999999998777543 3599999999999887764
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.94 E-value=0.017 Score=43.26 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=54.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEee------------CC-CC-CCceEEEEEEccHHHHHHHHHHhCCc
Q 025976 52 GTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHF------------DK-NG-RPSGSAEVVYARRSDAFAALKRYNNV 116 (245)
Q Consensus 52 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~-v~i~~------------~~-tg-~~~G~afV~F~~~e~a~~Ai~~l~~~ 116 (245)
...|.|=+.|+.. ...|.+.|++||.|.+ +.+.. .+ .. ....+..|+|.++.+|++||. .|+.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3556677887654 4667788999999875 22111 00 00 124578999999999999996 5999
Q ss_pred eeCCceeEEEEecC
Q 025976 117 LLDGKPMKIEVVGT 130 (245)
Q Consensus 117 ~l~g~~l~V~~a~~ 130 (245)
.|.|..|=|.+...
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887754
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.64 E-value=0.0083 Score=45.87 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=27.2
Q ss_pred EEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC
Q 025976 82 YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 115 (245)
Q Consensus 82 v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~ 115 (245)
+.|+.+.. .++||+||+|.+.++|++|++.+++
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcc
Confidence 45555554 5799999999999999999988775
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.13 E-value=0.011 Score=44.90 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=35.1
Q ss_pred CCceEEEEEEccHHHHHHHHHHh-CCceeCCceeEEEEecC
Q 025976 91 RPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKIEVVGT 130 (245)
Q Consensus 91 ~~~G~afV~F~~~e~a~~Ai~~l-~~~~l~g~~l~V~~a~~ 130 (245)
..+|+++|+|.+.++|++|++.| |+..|+| .|.|.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 56899999999999999999999 9999999 888886654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.40 E-value=0.58 Score=42.91 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 115 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~ 115 (245)
....++|+ +|..+...+|.++|+.||.| .|..+.+ -.|||.|.+.+.|..++..+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 34556665 88888999999999999954 4555533 2699999999999999998853
No 222
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=86.27 E-value=4.1 Score=28.16 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC
Q 025976 49 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114 (245)
Q Consensus 49 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~ 114 (245)
....|-|.|-|+|..+-..++.-.....|---.|..+ -|-|.|.|.+.++...||..|-
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHH
Confidence 4577889999999999888877666667755566655 3579999999999999998773
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=82.07 E-value=4.2 Score=26.61 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=42.0
Q ss_pred EEEEcCC-CCCCcHHHHHHHhhcCCC-----eeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEE
Q 025976 54 KLYVSNL-HPGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 127 (245)
Q Consensus 54 ~l~V~nL-p~~~te~~L~~~F~~~G~-----i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~ 127 (245)
+|||..= -..+...+|..++..-+. |-.|.|.. .|.||+-... .++.+++.|+...+.++.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEE
Confidence 4555321 234566777777754433 44566653 3789998754 78889999999999999999987
Q ss_pred ec
Q 025976 128 VG 129 (245)
Q Consensus 128 a~ 129 (245)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 224
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=59.75 E-value=1.9 Score=30.65 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCCCCcHHH
Q 025976 51 VGTKLYVSNLHPGVTNDD 68 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~ 68 (245)
..++|||.|||+.+|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 446799999999999864
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.10 E-value=20 Score=27.71 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=35.5
Q ss_pred CEEEEcCCCCC---------CcHHHHHHHh--hcCCCeeEEEEeeCCCCCCceEEEEEEccHH
Q 025976 53 TKLYVSNLHPG---------VTNDDIRELF--SEIGELKRYAIHFDKNGRPSGSAEVVYARRS 104 (245)
Q Consensus 53 ~~l~V~nLp~~---------~te~~L~~~F--~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e 104 (245)
.++.|-|+|.. .+..+|.+.| +.|.+++ |..+.++.| +.|+++|+|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCCh
Confidence 45677788861 3346899977 9997755 666666655 4689999997653
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=43.23 E-value=57 Score=20.16 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=41.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 113 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l 113 (245)
.++.|.++.-..-...|+..+.. -.|..+.+... .+.+.|+|.+.++...+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHc
Confidence 56889999877777889999888 77887777643 456788887677777777754
No 227
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=43.81 E-value=6.9 Score=27.80 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=36.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeeCC-CCCCc-eEEEEEEccHHHHHHHHHHhCCc
Q 025976 51 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPS-GSAEVVYARRSDAFAALKRYNNV 116 (245)
Q Consensus 51 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-tg~~~-G~afV~F~~~e~a~~Ai~~l~~~ 116 (245)
...+|-|..+. ++++|..+..+.. +..+.+.... .|+.- -.-+=.|.+.++|..|+..|...
T Consensus 24 ~~YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 24 SHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 34556554443 5667777777665 4445444433 33321 11233789999999999988653
No 228
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.18 E-value=48 Score=23.17 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=45.8
Q ss_pred CCCCCCcHHHHHHHh-hcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCceeEEEEecCCC
Q 025976 59 NLHPGVTNDDIRELF-SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 132 (245)
Q Consensus 59 nLp~~~te~~L~~~F-~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~~~l~g~~l~V~~a~~~~ 132 (245)
.++..+.-++|..-. ..||.-..+..+.+ -..|-..+.++.++||+.|+.. ..-+.|+|-+..+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 457778888876444 57887666655522 3788899999999999987643 344567776666553
No 229
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=36.55 E-value=3.1 Score=37.24 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=12.0
Q ss_pred HHHHHhhcCCCeeEE
Q 025976 68 DIRELFSEIGELKRY 82 (245)
Q Consensus 68 ~L~~~F~~~G~i~~v 82 (245)
+|..||.++++|..|
T Consensus 8 ~L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 8 NLLALFAPRDPIPYL 22 (437)
T ss_pred cHHHhcCCCCCCcCC
Confidence 367899999888876
No 230
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=36.31 E-value=24 Score=33.09 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCCCCCcHHHHHHHh----hcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhC
Q 025976 59 NLHPGVTNDDIRELF----SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 114 (245)
Q Consensus 59 nLp~~~te~~L~~~F----~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~ 114 (245)
.++.+.+--||..+| ..+|.|.++.|...+.-....+++|.|.+.++|..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 344444545788888 36888888887766644556688999999999998887653
No 231
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.70 E-value=94 Score=20.96 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=24.7
Q ss_pred eeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHhCC
Q 025976 79 LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 115 (245)
Q Consensus 79 i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l~~ 115 (245)
|..|.+.. ...||.||++...++...+|..+.+
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 44554442 3789999999999888888876665
No 232
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=40.00 E-value=8.7 Score=30.65 Aligned_cols=9 Identities=44% Similarity=0.637 Sum_probs=5.6
Q ss_pred HHHHHHHHh
Q 025976 233 KELDNYHAE 241 (245)
Q Consensus 233 ~~l~~~~~~ 241 (245)
.|||+.|+-
T Consensus 204 ~~~~~~~~~ 212 (215)
T 2l6f_A 204 RELDELMAS 212 (215)
Confidence 467777653
No 233
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=33.47 E-value=15 Score=24.70 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.8
Q ss_pred CCChHhHHHHHHHHHHhhhcC
Q 025976 225 DKSADDLDKELDNYHAEAMQI 245 (245)
Q Consensus 225 ~~~~~~~d~~l~~~~~~~~~~ 245 (245)
.+|+++|.+-|++|-+++.||
T Consensus 32 vktedelkkyleefrkesqni 52 (110)
T 2kpo_A 32 VKTEDELKKYLEEFRKESQNI 52 (110)
T ss_dssp CCSHHHHHHHHHHHTSSTTSE
T ss_pred eccHHHHHHHHHHHHhhccCe
Confidence 578999999999998888775
No 234
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=32.35 E-value=16 Score=30.29 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=25.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEe
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 85 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 85 (245)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 467899999999999999999765445544333
No 235
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.82 E-value=45 Score=27.49 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=23.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeEE
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKRY 82 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 82 (245)
..+.|+|||+.++...|..++.. ..+..+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 56789999999999999999977 445433
No 236
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.36 E-value=8 Score=29.17 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=16.1
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCCceEEEEEEc
Q 025976 67 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA 101 (245)
Q Consensus 67 ~~L~~~F~~~G~i~~v~i~~~~tg~~~G~afV~F~ 101 (245)
+|+.+||...|.|+... ..+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn-------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN-------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE-------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE-------CCCCeeEEeeC
Confidence 45666777777666322 23789999865
No 237
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=25.98 E-value=58 Score=26.39 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=22.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeE
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKR 81 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 81 (245)
..+.|+|||+.++...|..++...-.+..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 46889999999999999888875433443
No 238
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=25.87 E-value=1.2e+02 Score=21.35 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHhh-cCCC---eeEEEEeeCC--CCCCceEEEEEEccHHHHHH
Q 025976 62 PGVTNDDIRELFS-EIGE---LKRYAIHFDK--NGRPSGSAEVVYARRSDAFA 108 (245)
Q Consensus 62 ~~~te~~L~~~F~-~~G~---i~~v~i~~~~--tg~~~G~afV~F~~~e~a~~ 108 (245)
.+++..+|++.+. .|+. +..|.-+... .+.+.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3567788776664 3432 2233333333 4567777766 666666553
No 239
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.44 E-value=98 Score=21.57 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHhhc-CCC---eeEEEEeeCC--CCCCceEEEEEEccHHHHHH
Q 025976 62 PGVTNDDIRELFSE-IGE---LKRYAIHFDK--NGRPSGSAEVVYARRSDAFA 108 (245)
Q Consensus 62 ~~~te~~L~~~F~~-~G~---i~~v~i~~~~--tg~~~G~afV~F~~~e~a~~ 108 (245)
.+++..+|++.+.. |+. +..|.-+... .+++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888776643 432 2233333333 4566777765 566655543
No 240
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=24.41 E-value=42 Score=30.38 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHh--hcCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHH
Q 025976 68 DIRELF--SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 110 (245)
Q Consensus 68 ~L~~~F--~~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai 110 (245)
+|..+| +.+|-|.++.+...+.......+++.|.+.+++..++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456777 3689888887776654344456788998877765544
No 241
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.03 E-value=62 Score=16.25 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=11.4
Q ss_pred ChHhHHHHHHHHHHh
Q 025976 227 SADDLDKELDNYHAE 241 (245)
Q Consensus 227 ~~~~~d~~l~~~~~~ 241 (245)
++++|-+||++.+..
T Consensus 2 nadelykeledlqer 16 (27)
T 3twe_A 2 NADELYKELEDLQER 16 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 478899999887643
No 242
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.66 E-value=61 Score=26.12 Aligned_cols=29 Identities=17% Similarity=-0.036 Sum_probs=22.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeeE
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSEIGELKR 81 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 81 (245)
..+.|.|||+.++...|..++.....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 45889999999999999999876544443
No 243
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=22.65 E-value=97 Score=27.69 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHhh----cCCCeeEEEEeeCCCCCCceEEEEEEccHHHHHHHHHHh
Q 025976 61 HPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 113 (245)
Q Consensus 61 p~~~te~~L~~~F~----~~G~i~~v~i~~~~tg~~~G~afV~F~~~e~a~~Ai~~l 113 (245)
..+.+.-+|..+|- .+|-|..+.+...+.......+++.|.+.++|..++..+
T Consensus 195 ~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 195 KKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp SCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 33333345666663 567788877766554344567889999999998888765
No 244
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=22.59 E-value=60 Score=21.05 Aligned_cols=17 Identities=41% Similarity=0.603 Sum_probs=13.5
Q ss_pred CCChHhHHHHHHHHHHh
Q 025976 225 DKSADDLDKELDNYHAE 241 (245)
Q Consensus 225 ~~~~~~~d~~l~~~~~~ 241 (245)
...++||++||+.--.+
T Consensus 7 diDE~eL~aELdaL~~e 23 (69)
T 3uly_B 7 ELDEDDLEAELDALGDE 23 (69)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 57899999999976543
No 245
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=22.26 E-value=1.2e+02 Score=21.23 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHhhc-CCC---eeEEEEeeCC--CCCCceEEEEEEccHHHHH
Q 025976 62 PGVTNDDIRELFSE-IGE---LKRYAIHFDK--NGRPSGSAEVVYARRSDAF 107 (245)
Q Consensus 62 ~~~te~~L~~~F~~-~G~---i~~v~i~~~~--tg~~~G~afV~F~~~e~a~ 107 (245)
.+++..+|++.+.. |+. +..|.-+... .+++.|||.| |.+.+.|.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~ak 78 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMA 78 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 45677888766643 332 2233323333 4567777766 66665554
No 246
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.00 E-value=32 Score=28.06 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=23.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEE
Q 025976 54 KLYVSNLHPGVTNDDIRELFSEIGELKRYAI 84 (245)
Q Consensus 54 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 84 (245)
-..|.|||+.++...|..++.....+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 4489999999999999999986555554333
No 247
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.04 E-value=79 Score=27.20 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=19.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhc
Q 025976 53 TKLYVSNLHPGVTNDDIRELFSE 75 (245)
Q Consensus 53 ~~l~V~nLp~~~te~~L~~~F~~ 75 (245)
..+.|+|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 34789999999999988888864
Done!