BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025977
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 313 bits (802), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 147/213 (69%), Positives = 181/213 (84%), Gaps = 1/213 (0%)
Query: 31 GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
GV+P+ ++G+S +VKAEH S +SS++ DKC RR ++ GV+APW+SL+++ P SFAAE
Sbjct: 18 GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76
Query: 91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77 SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136
Query: 151 GPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVG 210
GPP+++AETLIKK LAPP QKT +I ASE+DVDGK YY FEFT QA NY RHALG +TV
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVF 196
Query: 211 NGKFYTLTTGANERRWGKMKDRLQTVIESFKIS 243
NG FYTLTTGANERRW KMKDRL TV++SFKI+
Sbjct: 197 NGNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 46 KAEHASMASSANSLDKCGRRQ-MIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDK 101
KA+ + S + RRQ ++ VG +LV + P+ A E K + D+
Sbjct: 41 KADSSESTYQKGSGNNWKRRQALVGVG------TLVATSIPATLLLAEEIPKSYSPFVDR 94
Query: 102 KDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLI 161
+DGYS+ YP W+E D FKD L++V V IPT K DI + GP +EV L+
Sbjct: 95 EDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLV 154
Query: 162 KKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGA 221
K A P Q I E DGK YY FE+ + P Y + V VGN ++YTL GA
Sbjct: 155 KHKFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGA 214
Query: 222 NERRWGKMKDRLQTVIESFKISNV 245
NERRW K+K +LQ V +S KI +
Sbjct: 215 NERRWRKVKKQLQVVADSLKILQI 238
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 33/222 (14%)
Query: 54 SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
+ A + GRR+ + +G++ + +V+Q P +FA S F D DGYSF YP
Sbjct: 69 TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125
Query: 112 GWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD---IRDFGPPQEVAETLIKKFLAP- 167
W +V G D F+D + E++SV + + D G P+EV + +++++L
Sbjct: 126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEF 185
Query: 168 -------PTQKTKIIAASENDVDGKAYYAFEFTAQA-----------------PNYIRHA 203
Q + +S DGK YY E ++ + R
Sbjct: 186 MSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRY 245
Query: 204 LGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISNV 245
L V+ V N + Y++ E+ + + + L+ V++SF++ +
Sbjct: 246 LAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 43 LIVKAEHASMASSANSLDKCGRRQMI-------AVGV-IAPWVSLVNQTPPSFA-AESNK 93
LI +A+ +S + NS RR + AVG IAP + + F A++N
Sbjct: 36 LICRAQKSS-DTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNT 94
Query: 94 GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
FL T DG++ + P W +EV GQ ++D + +VSV + PT K+ I D+
Sbjct: 95 DFLPYTG--DGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDY 152
Query: 151 GPPQEVAET---LIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF--- 192
G P+E T L+ K F I+ S V GK YY
Sbjct: 153 GTPEEFLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTR 212
Query: 193 TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
TA +H + TV +GK Y A ++RW K K +++ SF ++
Sbjct: 213 TADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264
>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus
pseudonarcissus GN=PSBP PE=2 SV=1
Length = 265
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 90 ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
++N F +VT DG+ + P W +EV GQ ++D + +V V + PT K+
Sbjct: 92 KTNTDFQTVTG--DGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKS 149
Query: 147 IRDFGPPQE--------------VAETLIKKFLAPPTQKT-KIIAASENDVDGKAYYAFE 191
I+D+G P++ +T+ + P +T I+ S V GK YY+
Sbjct: 150 IKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIH 209
Query: 192 F---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK 228
TA +H L TV +GK Y A ++RW K
Sbjct: 210 VLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFK 249
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 90 ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
+SN +L + DG+ P W +E GQ ++D + ++SV + PT K+
Sbjct: 90 KSNTDYLPYSG--DGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKS 147
Query: 147 IRDFGPPQEV---AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYY--- 188
I+DFG P+E + L+ K F I+ A+ ++V+GK YY
Sbjct: 148 IKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVS 207
Query: 189 AFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK 228
TA +H L TV +GK Y A ++RW K
Sbjct: 208 VLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFK 247
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
tuberosum GN=PSBP PE=2 SV=1
Length = 260
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
DG+ P W +E+ GQ ++D + ++ V + PT K+ I D+G P+E
Sbjct: 98 DGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSK 157
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
+ L+ K F + ++ AS V GK YY TA +
Sbjct: 158 VDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGK 217
Query: 202 HALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
H L TV +GK Y A ++RW K K ++ SF I+
Sbjct: 218 HQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260
>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana
tabacum GN=PSBP3 PE=2 SV=1
Length = 266
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 32/244 (13%)
Query: 31 GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
G++P++ + L+ +A++ A ++++ + +A+ ++ ++ ++ P+ AA
Sbjct: 24 GIVPSLKSNQL-LVCRAQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAY 82
Query: 91 SNKGFL-----SVTD----KKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVN 138
+ + TD DG+ P W +EV GQ F+D + +V V
Sbjct: 83 GEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVA 142
Query: 139 LIPTGKQDIRDFGPPQEV---AETLIKK------------FLAPPTQKTKIIAASENDVD 183
+ PT K+ I DFG P++ + L+ + F + ++ S +V
Sbjct: 143 ITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVG 202
Query: 184 GKAYYAFEF---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIES 239
GK YY TA +H L TV +GK Y A ++RW K K ++ S
Sbjct: 203 GKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATS 262
Query: 240 FKIS 243
F ++
Sbjct: 263 FSLA 266
>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
lycopersicum GN=PSBP PE=2 SV=1
Length = 258
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 89/228 (39%), Gaps = 29/228 (12%)
Query: 43 LIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----ESNKGFLS 97
LI +A+ AS+A + +I I VS + A + N FL
Sbjct: 33 LICRAQKQDDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLP 92
Query: 98 VTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQ 154
DG+ P W +EV GQ ++D + ++ V + PT K+ I D+G P+
Sbjct: 93 YNG--DGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150
Query: 155 EV---AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQA 196
E + L+ K F + ++ AS V GK YY TA
Sbjct: 151 EFLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADG 210
Query: 197 PNYIRHALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
+H L TV +GK Y A ++RW K K ++ SF I+
Sbjct: 211 DEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
DG+ P W +EV GQ F+D + +V V + PT K+ I DFG P++
Sbjct: 103 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 162
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
+ L+ + F + ++ S +V GK YY TA +
Sbjct: 163 VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGK 222
Query: 202 HALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
H L TV +GK Y A ++RW K K ++ SF ++
Sbjct: 223 HQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
DG+ + P W +E GQ ++D + ++SV + PT K+ I DFG P++
Sbjct: 105 DGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQ 164
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
+ L+ K F + ++ +S VDGK YY+ TA +
Sbjct: 165 VDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGK 224
Query: 202 HALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
H + TV +GK Y A ++RW K K +++ SF ++
Sbjct: 225 HQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 22/163 (13%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
DG+ P W +E+ GQ F+D + +++V + PT K+ I D+G P+E
Sbjct: 101 DGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQ 160
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
L+ K F I+ +S +V GK YY TA +
Sbjct: 161 VNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGK 220
Query: 202 HALGVVTVGNGKFYTLTTGANERRWGK-MKDRLQTVIESFKIS 243
H L TV GK Y A ++RW K + +++ SF ++
Sbjct: 221 HQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana
tabacum GN=PSBP1 PE=3 SV=2
Length = 268
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 23/160 (14%)
Query: 90 ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
+ N FL+ DG+ P W +EV GQ ++D + ++ V + PT K+
Sbjct: 95 KENTDFLAYNG--DGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKS 152
Query: 147 IRDFGPPQEV---AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFE 191
I D+G P+E + L+ K F + ++ S + V GK YY
Sbjct: 153 ITDYGSPEEFLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILS 212
Query: 192 F---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK 228
TA +H L TV GK Y A ++RW K
Sbjct: 213 VLTRTADGDEGGKHQLISATVNGGKLYICKAQAGDKRWFK 252
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV--- 156
DG+ P W +EV GQ ++D + +++V + PT K+ I D+G P+E
Sbjct: 98 DGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQ 157
Query: 157 AETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIR 201
L+ K F I+ + DV GK YY TA +
Sbjct: 158 VNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGK 217
Query: 202 HALGVVTVGNGKFYTLTTGANERRWGKMKDR-LQTVIESFKIS 243
H L TV GK Y A ++RW K ++ ++ SF ++
Sbjct: 218 HQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260
>sp|P82537|TL1X_SPIOL Thylakoid lumenal 17 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 30
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 89 AESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
AES KGFL V DKKDGY+F+YPFG QEV I
Sbjct: 1 AESKKGFLPVIDKKDGYTFLYPFGGQEVSI 30
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 24/176 (13%)
Query: 90 ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
++N F ++ DG+ P W +EV GQ ++D + +++V + PT K+
Sbjct: 44 KTNTDFTAI--NGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKS 101
Query: 147 IRDFGPPQE--------------VAETLIK-KFLAPPTQKTKIIAASENDVDGKAYYAFE 191
I D+G P+E ET + F I+ + DV GK YY
Sbjct: 102 ITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYLS 161
Query: 192 F---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDR-LQTVIESFKIS 243
TA +H L TV GK Y A ++RW K ++ ++ SF ++
Sbjct: 162 VLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 21/146 (14%)
Query: 104 GYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV---A 157
G+ P W +EV GQ ++D + +++V + PT K+ I D+G P+E
Sbjct: 102 GFKLSVPAKWNPSKEVEYPGQVLRYEDNFDTTSNLAVMVTPTDKKAITDYGAPEEFLSKV 161
Query: 158 ETLIKK------------FLAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIRH 202
+ L+ K F I+ + VDGK YY TA +H
Sbjct: 162 DYLLGKQAYFGKTASEGGFEQDAVATANILEVATPTVDGKQYYFLSVLTRTADGDEGGKH 221
Query: 203 ALGVVTVGNGKFYTLTTGANERRWGK 228
L TV +GK Y A ++RW K
Sbjct: 222 QLISATVSDGKLYICKAQAGDKRWFK 247
>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum
GN=PSBP PE=1 SV=1
Length = 259
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 44/247 (17%)
Query: 7 SPSSSIHQTSFLNSLPQ---LGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCG 63
+P+ ++ Q + + P QK V+ AV R ++L V A++ S
Sbjct: 16 TPTRTLSQRQVVTTKPNHIVCKAQKQDDVVDAVVSRRLALSVLIGAAAVGSK-------- 67
Query: 64 RRQMIAVGVIAPWVSLVNQTPPSFA-AESNKGFLSVTDKKDGYSFVYPFGW---QEVIIE 119
++P + + F A++N +L DG+ + P W +E
Sbjct: 68 ---------VSPADAAYGEAANVFGKAKTNTDYLPYNG--DGFKLLVPAKWNPSKEREFP 116
Query: 120 GQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEV---AETLIKK------------F 164
GQ ++D + +VSV + T K+ I D+G P+E + L+ K F
Sbjct: 117 GQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGF 176
Query: 165 LAPPTQKTKIIAASENDVDGKAYYAFEF---TAQAPNYIRHALGVVTVGNGKFYTLTTGA 221
I+ +S + GK YY TA +H L TV +GK Y A
Sbjct: 177 DTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQA 236
Query: 222 NERRWGK 228
++RW K
Sbjct: 237 GDKRWFK 243
>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis
thaliana GN=PPD5 PE=1 SV=3
Length = 297
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 47/227 (20%)
Query: 63 GRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFL-------SVTDKKDGYSFVYPFGW-- 113
RR ++ +G+ +P + + P AE + ++ D + YS+ YP +
Sbjct: 53 SRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPS 112
Query: 114 QEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRD-------FGPP---------- 153
++++ +E + PL + I + + D+ D GPP
Sbjct: 113 EKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSRLTSKEKK 172
Query: 154 ----QEVAETLIKKFLA------PPTQKTKIIAASENDVDGKAYYAFEF--------TAQ 195
+EVA++++ A +++ ++ A +D+DG+ Y+ +E+ A+
Sbjct: 173 TWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAE 232
Query: 196 APNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
A RH + +G YT+ ++W KM L+ + SF++
Sbjct: 233 ASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRL 279
>sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum
aestivum GN=PSBP PE=2 SV=1
Length = 258
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 89 AESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ 145
A+ N F++ + +G+ + P W +E GQ ++D + ++SV + PT K+
Sbjct: 85 AKKNTDFVAYSG--EGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKK 142
Query: 146 DIRDFGPPQE----VAETLIKK-----------FLAPPTQKTKIIAASENDVDGKAYYAF 190
I D+G P+E V L ++ F + ++ +S VDGK YY+
Sbjct: 143 TITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATANVLESSAPVVDGKQYYSI 202
Query: 191 EF---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKIS 243
TA +H L TV +GK Y ++R + K ++ SF ++
Sbjct: 203 TVLTRTADGDEGGKHQLITATVADGKLYVCKAQRDKRWFKGAKKFVENAAGSFSVA 258
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 99 TDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAE 158
TD +G++ + P + +V G + +F+++ ++ V + P + + FG PQ VA+
Sbjct: 79 TDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVAD 138
Query: 159 TLIK-KFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPN-YIRHALGVVTVGNGKFYT 216
LI + T++ ++++ E G+ Y FE+ + I+ V + K Y
Sbjct: 139 KLINAEKRKESTKEAEVVSVGERAGLGQQVYEFEYKIDSTRGGIKRVFSAAFVSSNKLYL 198
Query: 217 LTTGANERRWGKM----KDRLQTVIESF 240
L +++ + + L+ V+ SF
Sbjct: 199 LNVVHSDKPENPLDSSTRMSLEQVLHSF 226
>sp|O49344|PSBP2_ARATH Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis
thaliana GN=PSBP2 PE=5 SV=3
Length = 125
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 139 LIPTGKQDIRDFGPPQE--------------VAETLIKK-FLAPPTQKTKIIAASENDVD 183
+ PT K+ I D+G P++ V ET + F A I+ S ++
Sbjct: 2 ITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIG 61
Query: 184 GKAYYAFEF---TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGK 228
GK YY TA +H L TV GK Y A ++RW K
Sbjct: 62 GKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFK 109
>sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At3g63540 PE=1 SV=2
Length = 229
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 26/169 (15%)
Query: 88 AAESNKGFLSVTDKKDGYSFVY--PFGWQEVII-------EGQDKVFKDVIEPLESVSVN 138
+A + G+ +D+K +VY P GW+E ++ G D F + + E +
Sbjct: 67 SAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLT 126
Query: 139 LIPTGKQDIRDFGPPQEVAETL------IKKFLAPPTQKTKIIAASENDVDGKAYYAFEF 192
+ R P + L ++ +A K+++ D G+ YY +E
Sbjct: 127 FL----AGFRQLAPRDVILNNLALSDVELQDLIA---GADKVVSEERKDETGQVYYLYEI 179
Query: 193 TAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFK 241
+H+L VT + Y A W + D L + +SFK
Sbjct: 180 DGVG----KHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFK 224
>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis
thaliana GN=PPD4 PE=1 SV=2
Length = 260
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 20/151 (13%)
Query: 105 YSFVYPFGWQEVIIE----GQDKVFKDVIEPLES-VSVNLIPTGK--------QDIRDFG 151
Y+F P W EV + G ++ P E +SV + P + I + G
Sbjct: 116 YAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIG 175
Query: 152 PPQEVAETLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGN 211
P +V + + + K+++++ + DG+ YY FE + P H L T
Sbjct: 176 QPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFEL--EPP----HVLITATAAG 228
Query: 212 GKFYTLTTGANERRWGKMKDRLQTVIESFKI 242
+ Y + N +W + L+ + SF+I
Sbjct: 229 NRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 259
>sp|B5FDK5|DTPB_VIBFM Dipeptide and tripeptide permease B OS=Vibrio fischeri (strain
MJ11) GN=dtpB PE=3 SV=1
Length = 495
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 169 TQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKF 214
T++T + A V Y+ F+ PN+I ALG + VGNG F
Sbjct: 78 TKRTMVFGAV---VLALGYFLMGFSILNPNFIYVALGAIAVGNGLF 120
>sp|P42217|KPSC5_ECOLX Capsule polysaccharide export protein KpsC OS=Escherichia coli
GN=kpsC PE=4 SV=1
Length = 675
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 161 IKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALG--VVTVGNGKFYTLT 218
++KFLA P QK ++ +VD A + +A P I A G V+ + +G +L
Sbjct: 15 LEKFLAQPCQKLSLLRPVPQEVDAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLD 74
Query: 219 TGAN 222
G N
Sbjct: 75 LGVN 78
>sp|Q92WJ0|FBPC1_RHIME Fe(3+) ions import ATP-binding protein FbpC 1 OS=Rhizobium meliloti
(strain 1021) GN=fbpC1 PE=3 SV=1
Length = 353
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 63 GRRQMIAVG---VIAPWVSLVNQTPPSFAAESNKGF---LSVTDKKDGYSFVYPFGWQEV 116
G++Q +AV V+ P V L+++ + A + + ++ G++ VY
Sbjct: 142 GQQQRVAVARALVLEPQVLLLDEPLSNLDARLRRRVRTEIRELQQRLGFTAVY------- 194
Query: 117 IIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIA 176
+ QD+ +VS +I +I GPP+E+ ET F+A + ++A
Sbjct: 195 VTHDQDEAL--------AVSDRIIVMKDGNIAQEGPPRELYETPASAFIADFMGEANVVA 246
Query: 177 ASENDVDG 184
DVDG
Sbjct: 247 CDVIDVDG 254
>sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis
thaliana GN=PPD6 PE=1 SV=1
Length = 262
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 7/132 (5%)
Query: 113 WQEVIIEG--QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQ 170
W EV E Q KV + V PL + L I D G P++V +L
Sbjct: 136 WIEVKFENEKQGKV-QVVASPL----IRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYD 190
Query: 171 KTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMK 230
+++ S + + YY + H L T A E++W +
Sbjct: 191 SDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQ 250
Query: 231 DRLQTVIESFKI 242
L+ +++SF++
Sbjct: 251 KTLEAILDSFQL 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,528,886
Number of Sequences: 539616
Number of extensions: 3720597
Number of successful extensions: 9492
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9458
Number of HSP's gapped (non-prelim): 28
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)