Query 025977
Match_columns 245
No_of_seqs 180 out of 386
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 1.2E-46 2.5E-51 327.1 20.8 183 60-244 75-286 (286)
2 PLN00042 photosystem II oxygen 100.0 3E-44 6.4E-49 313.1 20.5 182 59-242 47-259 (260)
3 PF01789 PsbP: PsbP; InterPro 100.0 2.7E-41 5.8E-46 283.9 17.2 160 84-243 12-175 (175)
4 PLN00067 PsbP domain-containin 100.0 6.2E-39 1.3E-43 279.1 19.8 182 58-242 39-263 (263)
5 PLN00066 PsbP domain-containin 100.0 9E-38 1.9E-42 274.4 20.4 183 55-244 38-260 (262)
6 PLN03152 hypothetical protein; 100.0 1.9E-28 4.1E-33 208.2 14.9 168 63-243 32-241 (241)
7 PF08786 DUF1795: Domain of un 98.7 8.3E-07 1.8E-11 70.7 15.5 127 106-240 3-130 (130)
8 PRK11615 hypothetical protein; 97.3 0.028 6.2E-07 47.3 15.7 133 102-242 47-184 (185)
9 COG5435 Uncharacterized conser 97.2 0.015 3.3E-07 47.5 13.3 127 106-243 10-142 (147)
10 PF10738 Lpp-LpqN: Probable li 95.9 0.19 4E-06 42.5 11.9 133 104-243 32-174 (175)
11 PF12712 DUF3805: Domain of un 95.4 1.2 2.6E-05 36.2 14.0 130 96-244 2-132 (153)
12 PF07174 FAP: Fibronectin-atta 94.1 1 2.2E-05 40.5 11.6 136 97-241 111-283 (297)
13 COG4784 Putative Zn-dependent 91.3 0.72 1.6E-05 43.0 7.0 136 85-244 274-416 (479)
14 PF10518 TAT_signal: TAT (twin 84.7 1.3 2.8E-05 25.6 2.7 17 62-78 2-18 (26)
15 TIGR02811 formate_TAT formate 60.1 9.4 0.0002 27.0 2.6 15 59-73 6-21 (66)
16 PF10399 UCR_Fe-S_N: Ubiquitin 58.4 8 0.00017 24.8 1.8 17 58-74 5-21 (41)
17 TIGR01409 TAT_signal_seq Tat ( 55.2 17 0.00036 21.3 2.7 12 62-73 1-12 (29)
18 PF10916 DUF2712: Protein of u 48.0 1.5E+02 0.0033 24.2 10.1 107 100-226 32-146 (146)
19 smart00564 PQQ beta-propeller 37.6 34 0.00075 19.5 2.2 20 208-227 12-31 (33)
20 PLN00058 photosystem II reacti 37.1 39 0.00085 25.7 2.9 22 58-79 45-66 (103)
21 PF10657 RC-P840_PscD: Photosy 36.2 1.4E+02 0.003 24.0 5.9 85 130-218 42-140 (144)
22 PF09211 DUF1958: Domain of un 34.5 32 0.0007 24.4 2.0 40 173-216 3-45 (65)
23 PF08802 CytB6-F_Fe-S: Cytochr 29.8 39 0.00085 21.5 1.6 13 61-73 5-17 (39)
24 PF08006 DUF1700: Protein of u 27.1 34 0.00074 28.4 1.3 18 146-163 46-63 (181)
25 PF12559 Inhibitor_I10: Serine 25.5 27 0.00058 24.0 0.3 12 104-115 44-55 (56)
26 PRK10882 hydrogenase 2 protein 25.0 86 0.0019 29.1 3.7 15 62-76 1-15 (328)
27 PLN00054 photosystem I reactio 24.3 91 0.002 25.0 3.1 14 60-73 26-39 (139)
28 PF14202 TnpW: Transposon-enco 23.5 1.5E+02 0.0033 18.3 3.5 28 211-238 8-35 (37)
29 PLN00064 photosystem II protei 22.7 73 0.0016 26.6 2.4 30 59-88 31-60 (166)
30 COG4102 Uncharacterized protei 22.1 66 0.0014 30.4 2.2 55 57-111 2-61 (418)
31 COG3212 Predicted membrane pro 20.7 4.7E+02 0.01 21.2 6.9 21 173-193 99-119 (144)
32 PF10633 NPCBM_assoc: NPCBM-as 20.5 1.4E+02 0.0031 20.9 3.3 12 103-114 24-35 (78)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=1.2e-46 Score=327.07 Aligned_cols=183 Identities=27% Similarity=0.508 Sum_probs=163.3
Q ss_pred CCcchhHHHHHHHH-HHHhhhcCCCCcCccccccCCceeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEE
Q 025977 60 DKCGRRQMIAVGVI-APWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVN 138 (245)
Q Consensus 60 ~~~~RR~~l~~~~~-aa~~~~~~~~~~a~A~~~~~gf~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~ 138 (245)
..++||++|+.++. +.+.......++|+|+ +.||+.|.|..|||+|.||.||+++...|+|++|+|+++.++||+|+
T Consensus 75 ~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVSV~ 152 (286)
T PLN00059 75 CAVGRRKSMMMGLLMSGLIVSEANLPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVE 152 (286)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhcCchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceEEE
Confidence 57899999876653 4444444555688886 45899999999999999999999999999999999999999999999
Q ss_pred EecCC---CCCCcccCChHHHHHHHHHhhcCCC-------CCceEEEEeeeec-cCCceeEEEEEEEeCC----------
Q 025977 139 LIPTG---KQDIRDFGPPQEVAETLIKKFLAPP-------TQKTKIIAASEND-VDGKAYYAFEFTAQAP---------- 197 (245)
Q Consensus 139 v~P~~---~~si~d~Gspeeva~~ll~~~~~~~-------~~~~~ll~a~~~~-~~G~~YY~~Ey~~~~~---------- 197 (245)
|+|++ +++|+|||+|++||++|++++++++ +++++|+++.+|+ .||++||++||.++.+
T Consensus 153 ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~ 232 (286)
T PLN00059 153 FSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMP 232 (286)
T ss_pred EecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccc
Confidence 99875 6999999999999999999998753 4799999999885 4999999999998773
Q ss_pred -------CCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceeee
Q 025977 198 -------NYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISN 244 (245)
Q Consensus 198 -------~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~~ 244 (245)
+|.||.|++++|.|||||||++|+||++|+++++.|++|++||+|.+
T Consensus 233 qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~~ 286 (286)
T PLN00059 233 QDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK 286 (286)
T ss_pred cccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeecC
Confidence 67999999999999999999999999999999999999999999975
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=3e-44 Score=313.14 Aligned_cols=182 Identities=27% Similarity=0.451 Sum_probs=156.3
Q ss_pred cCCcchhHHHHHHHHH-HHhhhcCCCCcCcccc--------ccCCceeeeeCCCCeEEEccCCce---EEeeecceeEEe
Q 025977 59 LDKCGRRQMIAVGVIA-PWVSLVNQTPPSFAAE--------SNKGFLSVTDKKDGYSFVYPFGWQ---EVIIEGQDKVFK 126 (245)
Q Consensus 59 ~~~~~RR~~l~~~~~a-a~~~~~~~~~~a~A~~--------~~~gf~~y~D~~~gysf~yP~~W~---e~~~~G~~~~f~ 126 (245)
...++||.+|++++++ ++++.++|+.+|++++ .+.||.+|. +|||+|+||.+|+ +..++|++++|+
T Consensus 47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~ 124 (260)
T PLN00042 47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFE 124 (260)
T ss_pred cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCccccccccCCceEEee
Confidence 3557899999877765 4455677888888653 578999997 4999999999998 556789999999
Q ss_pred cCCCCcceeEEEEecCCCCCCcccCChHHHHHH----HHHhhcCCC-----C------CceEEEEeeeeccCCceeEEEE
Q 025977 127 DVIEPLESVSVNLIPTGKQDIRDFGPPQEVAET----LIKKFLAPP-----T------QKTKIIAASENDVDGKAYYAFE 191 (245)
Q Consensus 127 d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~----ll~~~~~~~-----~------~~~~ll~a~~~~~~G~~YY~~E 191 (245)
|+++.++||+|+|+|+++++|+|||+|||++++ |.++++.++ + ..++|+++++++.||++||+||
T Consensus 125 D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE 204 (260)
T PLN00042 125 DNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLS 204 (260)
T ss_pred ccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEE
Confidence 999999999999999999999999999996555 456666543 1 1568999999999999999999
Q ss_pred EEEeCC---CCccEEEEEEEEECCEEEEEEEEecchhhhhh-hHHHHHhhcccee
Q 025977 192 FTAQAP---NYIRHALGVVTVGNGKFYTLTTGANERRWGKM-KDRLQTVIESFKI 242 (245)
Q Consensus 192 y~~~~~---~~~rH~l~~~~v~~grLYtl~~qape~~w~k~-~~~l~~iv~SF~v 242 (245)
|.++.+ +++||+|++++|.|||||||++|+||+||.|+ ++.|+.|++||+|
T Consensus 205 ~~~~~ad~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV 259 (260)
T PLN00042 205 VLTRTADGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV 259 (260)
T ss_pred EEEecCCCCCCCceEEEEEEEECCEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence 998755 58999999999999999999999999999998 5579999999987
No 3
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00 E-value=2.7e-41 Score=283.94 Aligned_cols=160 Identities=49% Similarity=0.843 Sum_probs=141.6
Q ss_pred CcCccccccCCceeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEEEecCCCC-CCcccCChHHHHHHHHH
Q 025977 84 PPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ-DIRDFGPPQEVAETLIK 162 (245)
Q Consensus 84 ~~a~A~~~~~gf~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~~~~-si~d~Gspeeva~~ll~ 162 (245)
..+.+++++.||++|.|+.+||+|.||.+|+++.+.|++++|+|+.+..+||+|+|.|+... +|++||+|++++++|++
T Consensus 12 ~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~~ 91 (175)
T PF01789_consen 12 NVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLLN 91 (175)
T ss_dssp ----STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHHH
T ss_pred hhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHhh
Confidence 33444567789999999999999999999999998999999999999999999999999754 99999999999999999
Q ss_pred hhcCCCC--CceEEEEeeeeccCCceeEEEEEEEeCCC-CccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhcc
Q 025977 163 KFLAPPT--QKTKIIAASENDVDGKAYYAFEFTAQAPN-YIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIES 239 (245)
Q Consensus 163 ~~~~~~~--~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~-~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~S 239 (245)
..+++++ +.++|+++.+++.+|++||+|||+++.++ +.||.|++++++||+||+|++|++|++|+++++.|++|++|
T Consensus 92 ~~~~~~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l~~~a~e~~w~k~~~~l~~iv~S 171 (175)
T PF01789_consen 92 GELASPGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTLTAQAPESRWDKVEPKLRKIVDS 171 (175)
T ss_dssp HCCCHCTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEHHHHHTCHHHHHHHHHC
T ss_pred hhcccccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 8776555 78999999999999999999999999887 89999999999999999999999999999999999999999
Q ss_pred ceee
Q 025977 240 FKIS 243 (245)
Q Consensus 240 F~v~ 243 (245)
|+|.
T Consensus 172 F~v~ 175 (175)
T PF01789_consen 172 FRVY 175 (175)
T ss_dssp -EE-
T ss_pred EEeC
Confidence 9983
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=100.00 E-value=6.2e-39 Score=279.08 Aligned_cols=182 Identities=19% Similarity=0.366 Sum_probs=150.3
Q ss_pred ccCCcchhHHHHHHHHHHHhhhcCCCCcCccc-----------cccCCceeeee-----------CCCCeEEEccCCceE
Q 025977 58 SLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----------ESNKGFLSVTD-----------KKDGYSFVYPFGWQE 115 (245)
Q Consensus 58 ~~~~~~RR~~l~~~~~aa~~~~~~~~~~a~A~-----------~~~~gf~~y~D-----------~~~gysf~yP~~W~e 115 (245)
......||++|..++.+.+++... ..++.|. ....||-.|.- ...||+|.||.+|++
T Consensus 39 ~~~~~~rr~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~ 117 (263)
T PLN00067 39 AAVVIHRRELLLGLALAPLILIAP-EPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQ 117 (263)
T ss_pred ccchhHHHHHHhhhhhhhhhhccC-CchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcC
Confidence 345578999986555544444332 1233331 12246776652 234899999999998
Q ss_pred Eeee----c-----------ceeEEecCCCCcceeEEEEecC------CCCCCcccCChHHHHHHHHHhhcCCCCCceEE
Q 025977 116 VIIE----G-----------QDKVFKDVIEPLESVSVNLIPT------GKQDIRDFGPPQEVAETLIKKFLAPPTQKTKI 174 (245)
Q Consensus 116 ~~~~----G-----------~~~~f~d~~~~~~nVsV~v~P~------~~~si~d~Gspeeva~~ll~~~~~~~~~~~~l 174 (245)
+.++ | ++++|+|.. ++||+|+|+|+ ++++|+|||+||+|+++|.+.+++++++..+|
T Consensus 118 v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eL 195 (263)
T PLN00067 118 TRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDEL 195 (263)
T ss_pred ccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcce
Confidence 8765 4 799999965 56999999997 35899999999999999999988878889999
Q ss_pred EEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhcccee
Q 025977 175 IAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242 (245)
Q Consensus 175 l~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v 242 (245)
+++++++.||++||+|||.++.++++||+|+++++++|+||||++|++|+||.|+++.|++|++||+|
T Consensus 196 LeAs~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l~~V~dSFsV 263 (263)
T PLN00067 196 LETSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDSFQA 263 (263)
T ss_pred EEeeeEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999988899999999999999999999999999999999999999999986
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=100.00 E-value=9e-38 Score=274.37 Aligned_cols=183 Identities=21% Similarity=0.453 Sum_probs=148.8
Q ss_pred ccCccCCcchhHHHHHHHHHHHhhhcCCCCcCc--------------cccccCCceeeeeCC-------------CCeEE
Q 025977 55 SANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSF--------------AAESNKGFLSVTDKK-------------DGYSF 107 (245)
Q Consensus 55 ~~~~~~~~~RR~~l~~~~~aa~~~~~~~~~~a~--------------A~~~~~gf~~y~D~~-------------~gysf 107 (245)
+...+..++||.+|+.++++++...+.-..++. .+.+..||++|..++ .+|+|
T Consensus 38 ~~~~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F 117 (262)
T PLN00066 38 TEDVATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSF 117 (262)
T ss_pred hhhhcchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEE
Confidence 345567789999998776653322222112222 223457899998653 37999
Q ss_pred EccCCceEEeee-----cceeEEecCCCCcceeEEEEecC--------CCCCCcccCChHHHHHHHHHhhcCCCCCceEE
Q 025977 108 VYPFGWQEVIIE-----GQDKVFKDVIEPLESVSVNLIPT--------GKQDIRDFGPPQEVAETLIKKFLAPPTQKTKI 174 (245)
Q Consensus 108 ~yP~~W~e~~~~-----G~~~~f~d~~~~~~nVsV~v~P~--------~~~si~d~Gspeeva~~ll~~~~~~~~~~~~l 174 (245)
.||.+|+|+.++ |.++.+++..+..+||+|+|.|+ ++++|+|||+||+|++.|++++++++.++++|
T Consensus 118 ~yP~GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eL 197 (262)
T PLN00066 118 KVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKV 197 (262)
T ss_pred ECCCCCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccce
Confidence 999999998876 54455554446778899999997 46899999999999999999988877789999
Q ss_pred EEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceeee
Q 025977 175 IAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISN 244 (245)
Q Consensus 175 l~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~~ 244 (245)
+++++++.+|++||+||| .||+|+++++.+||||+|++|+||+||++.++.|++|++||+|+.
T Consensus 198 l~a~~re~dGktYY~~E~-------~rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~~ 260 (262)
T PLN00066 198 LSMEVAEHSGRTYYQFEL-------PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVVT 260 (262)
T ss_pred eEeeeeecCCcEEEEEEE-------eCceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeeec
Confidence 999999999999999999 489999999999999999999999999999999999999999864
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.96 E-value=1.9e-28 Score=208.25 Aligned_cols=168 Identities=26% Similarity=0.408 Sum_probs=127.5
Q ss_pred chhHHHHHHHHHHHhh--hcCCCCcCcccc------------ccCCceeeeeCCCCeEEEccCCceEEe----e-ec---
Q 025977 63 GRRQMIAVGVIAPWVS--LVNQTPPSFAAE------------SNKGFLSVTDKKDGYSFVYPFGWQEVI----I-EG--- 120 (245)
Q Consensus 63 ~RR~~l~~~~~aa~~~--~~~~~~~a~A~~------------~~~gf~~y~D~~~gysf~yP~~W~e~~----~-~G--- 120 (245)
+||+++.-.+++.+.+ .-.+..+++|+. +...|-.|. ++||++.||.+++.+. + .|
T Consensus 32 ~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~--g~gf~~~~pp~f~di~e~~~~~~g~~~ 109 (241)
T PLN03152 32 SRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFY--GDGFSIRVPPSFEDIMEPEDYNAGLSL 109 (241)
T ss_pred cccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhh--CCceEEeCCCChhhhcChhhcccccce
Confidence 4888875444332222 223445556642 345677775 8999999999997432 1 12
Q ss_pred ---------ceeEEecCCCCcceeEEEEecCC--------CCCCcccCChHHHHHHHHHhhcCCCC---CceEEEEeeee
Q 025977 121 ---------QDKVFKDVIEPLESVSVNLIPTG--------KQDIRDFGPPQEVAETLIKKFLAPPT---QKTKIIAASEN 180 (245)
Q Consensus 121 ---------~~~~f~d~~~~~~nVsV~v~P~~--------~~si~d~Gspeeva~~ll~~~~~~~~---~~~~ll~a~~~ 180 (245)
-..+|..+ |..+||||+|.|.+ .++|.|||+|+||++.+++ ++ +.++.++.++
T Consensus 110 yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~vP-----~g~~~~saR~iel~~- 182 (241)
T PLN03152 110 YGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFVP-----GGATLYSARTIKVKE- 182 (241)
T ss_pred ecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhCC-----Ccccccccceeeeee-
Confidence 12556554 56789999999963 5899999999999966553 33 2456666644
Q ss_pred ccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977 181 DVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKIS 243 (245)
Q Consensus 181 ~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~ 243 (245)
+.+|++||+|||.++ .||.|++++|.+||||||+++++|+||+|++++|+++++||.|+
T Consensus 183 E~dGKtYY~lEy~v~----~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~ 241 (241)
T PLN03152 183 EEGIRTYYFYEFGRD----EQHVALVATVNSGKAYIAGATAPESKWDDDGVKLRSAAISLTVL 241 (241)
T ss_pred ecCCceeEEEEEEeC----CcEEEEEEEEcCCeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence 889999999999975 89999999999999999999999999999999999999999985
No 7
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=98.74 E-value=8.3e-07 Score=70.70 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=88.3
Q ss_pred EEEccCCceEEeeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEEEeeeeccCCc
Q 025977 106 SFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDVDGK 185 (245)
Q Consensus 106 sf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~a~~~~~~G~ 185 (245)
+|..|.+|+.... +...+.|......++.|+-.+.+ +=.+.++..++.+++. +......++++....+.+|.
T Consensus 3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l~-----~g~tl~~~~~~q~~~l-~~~l~~~~~~~~~~~~l~~~ 74 (130)
T PF08786_consen 3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPLP-----DGETLEDYLQRQLAQL-RKQLPGFQLVERQPITLGGR 74 (130)
T ss_dssp EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE--------TTS-HHHHHHHHHHHH-HCCSTT-EEEEEEEEEETTE
T ss_pred eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccCC-----CCCCHHHHHHHHHHHH-HhhCCCcEEEeeEEEEeCCC
Confidence 6788999997643 23444554433344444444432 1125566677665543 22445678888887789999
Q ss_pred eeEEEEEEEeCCCCccEEEEEEEEEC-CEEEEEEEEecchhhhhhhHHHHHhhccc
Q 025977 186 AYYAFEFTAQAPNYIRHALGVVTVGN-GKFYTLTTGANERRWGKMKDRLQTVIESF 240 (245)
Q Consensus 186 ~YY~~Ey~~~~~~~~rH~l~~~~v~~-grLYtl~~qape~~w~k~~~~l~~iv~SF 240 (245)
+.+.++|++..++..-|...++...+ +++|+|+.+++....++.++.++.|++||
T Consensus 75 ~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf 130 (130)
T PF08786_consen 75 PARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAILKSF 130 (130)
T ss_dssp EEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred CeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999998777779998888888 89999999999999999999999999998
No 8
>PRK11615 hypothetical protein; Provisional
Probab=97.26 E-value=0.028 Score=47.31 Aligned_cols=133 Identities=11% Similarity=0.141 Sum_probs=86.6
Q ss_pred CCCeEEEccCCceEEee-ec----ceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEEE
Q 025977 102 KDGYSFVYPFGWQEVII-EG----QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIA 176 (245)
Q Consensus 102 ~~gysf~yP~~W~e~~~-~G----~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~ 176 (245)
+.+++|.+|.|+.+... -| ..-+|.|..+ ..+-|++ +.+ .+-++ .+..+.+|..+- +......+++.
T Consensus 47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~tg--~kavIVi-~gD-~~~~~---Ld~la~rl~~qQ-r~rdp~lqvvs 118 (185)
T PRK11615 47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADATG--QKAVIVI-LGD-DTNED---LAVLAKRLEDQQ-RSRDPQLQVVT 118 (185)
T ss_pred ccEEEEEcCCccccccccccccccceEEEEcCCC--CEEEEEE-eCC-CChhh---HHHHHHHHHHHH-HhhCcCceeec
Confidence 57899999999985432 12 3456777544 2332222 221 11122 355566666442 21234557777
Q ss_pred eeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhcccee
Q 025977 177 ASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKI 242 (245)
Q Consensus 177 a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v 242 (245)
.+..+++|++..+.+=++...+..--.=.+++..|+||-+|-+..|.+.-.+....-+.|+++.++
T Consensus 119 nK~i~i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqqaq~~ae~ii~tl~~ 184 (185)
T PRK11615 119 NKAIELKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQQAQTTAENIINTLVI 184 (185)
T ss_pred ceeEEECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCCCCHHHHHHHHHHHHhheec
Confidence 777788999999999887653222233345566799999999999998888888888999988764
No 9
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.015 Score=47.47 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=79.8
Q ss_pred EEEccCCceEEeeecceeEEecCCCCcceeEEEEe--cCC-CCCCcccCChHHHHHHHHHhhcCCCCCceEEEEeeeecc
Q 025977 106 SFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLI--PTG-KQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASENDV 182 (245)
Q Consensus 106 sf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~--P~~-~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~a~~~~~ 182 (245)
+|..|+.|+...+ -.|.........++.+|+ |.. ...+ .++.++.+... ...-...++..-.+.++
T Consensus 10 ~l~lP~~w~DrSv----Nvf~~~~~gt~~~sfvIsRd~~~~g~~~------~~y~~rql~~l-~k~Lpgy~~~~~~e~~v 78 (147)
T COG5435 10 TLELPAAWQDRSV----NVFVSGDNGTSGFSFVISRDPLEPGDTF------PEYVQRQLALL-RKQLPGYELHHRREIEV 78 (147)
T ss_pred eEcCcchhccceE----EEEEecCCCcceeEEEEecCCCCCCCcH------HHHHHHHHHHH-HhhCCCeEEeecccccc
Confidence 6889999996543 123322222334555664 221 2222 34444433221 11122455665556678
Q ss_pred CCceeEEEEEEEeCC--CCcc-EEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977 183 DGKAYYAFEFTAQAP--NYIR-HALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKIS 243 (245)
Q Consensus 183 ~G~~YY~~Ey~~~~~--~~~r-H~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~ 243 (245)
+|...-..+|.+..+ +++| +.+.++.-.++++-+++++++-.-=++.++....++.||.+.
T Consensus 79 ~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p~ 142 (147)
T COG5435 79 GGAAAPLLDYQWTSPEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFVPN 142 (147)
T ss_pred CccccceeEEEeecCCCCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 888777788887774 4455 555664445778999999999998889999999999999864
No 10
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=95.93 E-value=0.19 Score=42.50 Aligned_cols=133 Identities=19% Similarity=0.134 Sum_probs=80.6
Q ss_pred CeEEEccCCceEEeee---cce--eEEecC-CCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEEEe
Q 025977 104 GYSFVYPFGWQEVIIE---GQD--KVFKDV-IEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAA 177 (245)
Q Consensus 104 gysf~yP~~W~e~~~~---G~~--~~f~d~-~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~a 177 (245)
.-++-.|.||+...-+ ..- +..... .+..-|+.|++.... .+| +|+|+++.=-.+... ....+.++.
T Consensus 32 ~v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~----G~~-Dp~e~l~~a~~d~~~--l~g~~~~~~ 104 (175)
T PF10738_consen 32 TVSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLT----GDF-DPAEALEHAPADAQN--LPGFRELDG 104 (175)
T ss_pred EEeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEecc----CCC-CHHHHHHhchhhHhh--CcCcccccC
Confidence 3677778899854322 111 112211 112345666665442 456 688887642112111 112345556
Q ss_pred eeeccCCceeEEEEEEEeCCCCccEEEEEEEE--ECCE--EEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977 178 SENDVDGKAYYAFEFTAQAPNYIRHALGVVTV--GNGK--FYTLTTGANERRWGKMKDRLQTVIESFKIS 243 (245)
Q Consensus 178 ~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v--~~gr--LYtl~~qape~~w~k~~~~l~~iv~SF~v~ 243 (245)
+.-+.+|-+-+.+|-+.+.++..+|......| .++. |-.|++++.+.+=....+..+.|.+.|+|.
T Consensus 105 s~~~~~GfpS~~i~GtY~~~g~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~It 174 (175)
T PF10738_consen 105 SPSDFSGFPSSQIEGTYDKDGMRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTIT 174 (175)
T ss_pred CccccCCCceeEEEEEEeeCCEEeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEec
Confidence 55678898899999776665555665555444 3444 556788888888888899999999999985
No 11
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=95.39 E-value=1.2 Score=36.20 Aligned_cols=130 Identities=13% Similarity=0.149 Sum_probs=59.9
Q ss_pred eeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEE
Q 025977 96 LSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKII 175 (245)
Q Consensus 96 ~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll 175 (245)
+.|..+..=|++.||.+|.|.+-.-....|-||..=..|..+..--. ++-+-..+++..-|++ ...++++
T Consensus 2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk~-----~~~~ygk~~i~~EL~e-----n~~a~~v 71 (153)
T PF12712_consen 2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYKG-----GSAQYGKECIRQELKE-----NPSAKLV 71 (153)
T ss_dssp EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE-------STTHHHHHHHHHHHH------TT-EEE
T ss_pred CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEec-----ccccchHHHHHHHHHh-----CCCcceE
Confidence 45666666799999999998762223456778877777776543321 1122234444443433 2234555
Q ss_pred EeeeeccCCceeEEEEEEEeCC-CCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceeee
Q 025977 176 AASENDVDGKAYYAFEFTAQAP-NYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISN 244 (245)
Q Consensus 176 ~a~~~~~~G~~YY~~Ey~~~~~-~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~~ 244 (245)
..... .-.|.-|.--+.. .+..|.. ++-.++..|.|..+.+-.. .....+.|+.|.++.+
T Consensus 72 kvg~~----~caYs~E~f~eeg~~YtsH~W--vtg~~~~sfeCSFTv~kg~---~~~~aE~iiasL~vR~ 132 (153)
T PF12712_consen 72 KVGNW----ECAYSKEMFQEEGAYYTSHLW--VTGEGDVSFECSFTVPKGE---SVKEAEEIIASLEVRK 132 (153)
T ss_dssp EETTE----EEEEEEEEEEETTEEEEEEEE--EEEETTEEEEEEEEEETT------HHHHHHHHH-EE--
T ss_pred EeccE----EEEEEhhhhhccCeeEEEEEE--EEecCceEEEEEEEccCCC---CcchHHHHHhhheehh
Confidence 43322 1233333322111 1133433 3456889999999887432 2334677888877654
No 12
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=94.08 E-value=1 Score=40.47 Aligned_cols=136 Identities=24% Similarity=0.362 Sum_probs=68.3
Q ss_pred eeeeCCCCeEEEccCCceEEeee----cceeEEecCC--------CCc-ceeEEEEecCCCCCCcccC----ChHHHHHH
Q 025977 97 SVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVI--------EPL-ESVSVNLIPTGKQDIRDFG----PPQEVAET 159 (245)
Q Consensus 97 ~y~D~~~gysf~yP~~W~e~~~~----G~~~~f~d~~--------~~~-~nVsV~v~P~~~~si~d~G----speeva~~ 159 (245)
++.|...||+|.+|.||++.+-. |+...-+-.. .+. ..-+|.+...+ ++=|. +-.+.|.+
T Consensus 111 rvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld---~kl~a~ae~dn~kaa~r 187 (297)
T PF07174_consen 111 RVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLD---LKLFASAEPDNTKAAVR 187 (297)
T ss_pred cccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEecccc---ccccccccCChHHHHHH
Confidence 44455789999999999965421 4444332111 111 22344444443 11222 33456666
Q ss_pred HHHhh---c-CCC----CCceEEEEeeeeccCCc-eeEEEEEEEeCCCCccEEEEEEEEEC-----------CEEEEEEE
Q 025977 160 LIKKF---L-APP----TQKTKIIAASENDVDGK-AYYAFEFTAQAPNYIRHALGVVTVGN-----------GKFYTLTT 219 (245)
Q Consensus 160 ll~~~---~-~~~----~~~~~ll~a~~~~~~G~-~YY~~Ey~~~~~~~~rH~l~~~~v~~-----------grLYtl~~ 219 (245)
|..++ + .=+ +|+...|++. ...|. .|| |...+......-++++..|.. -|-|.+.+
T Consensus 188 l~sdmgeffmp~pg~rinq~~~~l~~~--g~~g~asyy--evkf~d~~kp~gqiw~~vvg~p~~~~~~~~~~~rwfvvwl 263 (297)
T PF07174_consen 188 LASDMGEFFMPYPGTRINQETTPLDAN--GMPGSASYY--EVKFTDANKPNGQIWAGVVGSPVAPGTPRGTPQRWFVVWL 263 (297)
T ss_pred HhccccceeccCCCccccccccccccC--CcccceeEE--EEEeccCCCCCCceEEEeecCcCCCCCCCCCCceEEEEEe
Confidence 66542 2 111 2555556543 33343 355 555444333333455555543 27888888
Q ss_pred EecchhhhhhhHHHHHhhccce
Q 025977 220 GANERRWGKMKDRLQTVIESFK 241 (245)
Q Consensus 220 qape~~w~k~~~~l~~iv~SF~ 241 (245)
.+...--+|.. -+.+.+|.|
T Consensus 264 gt~~~pvd~~~--a~~la~si~ 283 (297)
T PF07174_consen 264 GTANNPVDKGA--AKALAESIR 283 (297)
T ss_pred cCCCCCCCHHH--HHHHHhhcc
Confidence 87766655544 333444443
No 13
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=91.31 E-value=0.72 Score=43.02 Aligned_cols=136 Identities=15% Similarity=0.252 Sum_probs=67.6
Q ss_pred cCccccccCCce---eeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEEEecC--C-CCCCcccCChHHHHH
Q 025977 85 PSFAAESNKGFL---SVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPT--G-KQDIRDFGPPQEVAE 158 (245)
Q Consensus 85 ~a~A~~~~~gf~---~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~--~-~~si~d~Gspeeva~ 158 (245)
-.|++.+..||. .|.-++-|++|.||.||+-.+...+...+ .+.+ +.+.+-.+ + ..++.|| +.
T Consensus 274 ~lyGDSp~eGyvRgq~FlH~~Lg~tf~~P~Gf~IdN~~~Avlat----g~ge-~aIrfdgv~~~s~~sltdy------ir 342 (479)
T COG4784 274 LLYGDSPQEGYVRGQTFLHPELGVTFDVPDGFKIDNSAEAVLAT----GPGE-VAIRFDGVSDDSRRSLTDY------IR 342 (479)
T ss_pred cccCCCcccceecccceeccccceEEecCCceEecCchHHhhcc----CCcc-eeEeeccccCccccCHHHH------HH
Confidence 344566777886 56667889999999999854432111111 1111 22222211 1 1333333 22
Q ss_pred HHHHhhcCCCCCceEEEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEE-CCEEEEEEEEecchhhhhhhHHHHHhh
Q 025977 159 TLIKKFLAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVG-NGKFYTLTTGANERRWGKMKDRLQTVI 237 (245)
Q Consensus 159 ~ll~~~~~~~~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~-~grLYtl~~qape~~w~k~~~~l~~iv 237 (245)
. .|.+. -++.. .+..+++|. |=.+......|-.+-++.+. |++.|.|...+|-..- .-++.+..+.
T Consensus 343 s---gwv~g-l~~et---vkq~~iNG~-----~Aata~a~A~~w~fdvaVI~~g~rvyrfltavp~gs~-~l~~~a~sv~ 409 (479)
T COG4784 343 S---GWVAG-LDPET---VKQTTINGL-----EAATARASADRWQFDVAVIRAGDRVYRFLTAVPKGST-ALEPRANSVR 409 (479)
T ss_pred H---hhhcc-CChhh---hhhhccCCc-----hhcccCCCcccccceEEEEEeCCEEEEEEEecccCcc-hhhHHHHHHH
Confidence 1 22210 00111 111234442 22111112233344444554 7899999888875543 3445889999
Q ss_pred ccceeee
Q 025977 238 ESFKISN 244 (245)
Q Consensus 238 ~SF~v~~ 244 (245)
.|||++.
T Consensus 410 ~SFR~lt 416 (479)
T COG4784 410 RSFRPLT 416 (479)
T ss_pred hhcccCC
Confidence 9998763
No 14
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=84.68 E-value=1.3 Score=25.56 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=11.6
Q ss_pred cchhHHHHHHHHHHHhh
Q 025977 62 CGRRQMIAVGVIAPWVS 78 (245)
Q Consensus 62 ~~RR~~l~~~~~aa~~~ 78 (245)
++||++|..+++++++.
T Consensus 2 ~sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAA 18 (26)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 57999997666544333
No 15
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=60.11 E-value=9.4 Score=27.03 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=10.0
Q ss_pred cCCcchhHHHH-HHHH
Q 025977 59 LDKCGRRQMIA-VGVI 73 (245)
Q Consensus 59 ~~~~~RR~~l~-~~~~ 73 (245)
+...+||.+|. ++++
T Consensus 6 ~~~~sRR~Flk~lg~~ 21 (66)
T TIGR02811 6 KADPSRRDLLKGLGVG 21 (66)
T ss_pred cCCccHHHHHHHHHHH
Confidence 44568999995 4443
No 16
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=58.42 E-value=8 Score=24.83 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=8.6
Q ss_pred ccCCcchhHHHHHHHHH
Q 025977 58 SLDKCGRRQMIAVGVIA 74 (245)
Q Consensus 58 ~~~~~~RR~~l~~~~~a 74 (245)
+....+||.+|.+++++
T Consensus 5 ~~~~~~RRdFL~~at~~ 21 (41)
T PF10399_consen 5 EPVDPTRRDFLTIATSA 21 (41)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHH
Confidence 34556799999655543
No 17
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=55.15 E-value=17 Score=21.26 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=8.4
Q ss_pred cchhHHHHHHHH
Q 025977 62 CGRRQMIAVGVI 73 (245)
Q Consensus 62 ~~RR~~l~~~~~ 73 (245)
++||++|.....
T Consensus 1 ~sRR~Flk~~~~ 12 (29)
T TIGR01409 1 LSRRDFLKGAAA 12 (29)
T ss_pred CchhhhHHHHHH
Confidence 369999965443
No 18
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=48.05 E-value=1.5e+02 Score=24.24 Aligned_cols=107 Identities=15% Similarity=0.233 Sum_probs=53.6
Q ss_pred eCCCCeEEEccCCceEEeeecceeEEecCCCCcce--eEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCC--CceEEE
Q 025977 100 DKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLES--VSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPT--QKTKII 175 (245)
Q Consensus 100 D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~n--VsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~--~~~~ll 175 (245)
|..=+|.|.+|..-... +.+.+|+........ |.|.-+..++.+|..| +|.+.-.... ...++.
T Consensus 32 dn~i~F~F~i~~~~ans---ys~~ryRqTt~t~n~WKV~l~~StEGkGTi~tf---------wL~~yn~~~~~~~~S~~~ 99 (146)
T PF10916_consen 32 DNNIPFSFTIKPNQANS---YSGSRYRQTTSTNNPWKVNLTYSTEGKGTIYTF---------WLGHYNKNNGASKASKTH 99 (146)
T ss_pred ccCCceEEEeCCccccc---ccCceeeccCCCCCccEEeccccccccceEEEE---------eeehccCCCCccccceeE
Confidence 44678999999866532 335566644443333 4444445566777776 2322222221 334555
Q ss_pred EeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECC----EEEEEEEEecchhh
Q 025977 176 AASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNG----KFYTLTTGANERRW 226 (245)
Q Consensus 176 ~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~g----rLYtl~~qape~~w 226 (245)
++..- .|..|| .-|. ...|.-..+++.|+ .-|.+..-=.|+-|
T Consensus 100 ~v~qG--~~~~Y~-~ays-----~a~k~~v~LaaeNnn~~~~~Y~VsG~WDEETw 146 (146)
T PF10916_consen 100 NVKQG--SGYRYY-GAYS-----SASKSNVYLAAENNNYSPSTYYVSGYWDEETW 146 (146)
T ss_pred Eeeec--CCceee-hhhc-----ccccceEEEEEecCCCCceEEEEeeEeccccC
Confidence 55432 244343 3331 13344444555543 46776665555555
No 19
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=37.56 E-value=34 Score=19.51 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=16.9
Q ss_pred EEECCEEEEEEEEecchhhh
Q 025977 208 TVGNGKFYTLTTGANERRWG 227 (245)
Q Consensus 208 ~v~~grLYtl~~qape~~w~ 227 (245)
+-.+|.||.+.....+..|.
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EcCCCEEEEEEcccCcEEEE
Confidence 44579999999999999886
No 20
>PLN00058 photosystem II reaction center subunit T; Provisional
Probab=37.06 E-value=39 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=15.2
Q ss_pred ccCCcchhHHHHHHHHHHHhhh
Q 025977 58 SLDKCGRRQMIAVGVIAPWVSL 79 (245)
Q Consensus 58 ~~~~~~RR~~l~~~~~aa~~~~ 79 (245)
.+...+||.++...+++++.+.
T Consensus 45 ~e~~~gRR~~mfaaaAaav~s~ 66 (103)
T PLN00058 45 QQSTTMRRDLMFTAAAAAVCSL 66 (103)
T ss_pred ccchhhHHHHHHHHHHHHHHhh
Confidence 3567789999976666555443
No 21
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=36.23 E-value=1.4e+02 Score=23.96 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=43.8
Q ss_pred CCcceeEEEEecCCCCCCcccCChHHHHHHHHHhh-----cCCCCCceEEEEeeeeccCCceeEEEEEEEeCCCCccE--
Q 025977 130 EPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKF-----LAPPTQKTKIIAASENDVDGKAYYAFEFTAQAPNYIRH-- 202 (245)
Q Consensus 130 ~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~-----~~~~~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH-- 202 (245)
|...++.+++.|... -..+-+-.|....|.... ++ .+..--++......|...-|.++|.-++-.|..+
T Consensus 42 D~~g~Lql~i~pasG--rrkLspt~emi~~l~~geIel~VLt--tqpDIai~l~~kVldnEnRYViDFD~RGvkwTMRdi 117 (144)
T PF10657_consen 42 DRYGKLQLTISPASG--RRKLSPTPEMIDKLISGEIELFVLT--TQPDIAINLQQKVLDNENRYVIDFDKRGVKWTMRDI 117 (144)
T ss_pred ccCCceEEEEecCCC--ccccCCcHHHHHHHhcCceEEEEEc--cCCCeeechhhhhhcccceEEEeccCCcceeEeecC
Confidence 445568899999852 234556677777766431 11 1222223333333444445667764322111111
Q ss_pred ------EEEEEEEE-CCEEEEEE
Q 025977 203 ------ALGVVTVG-NGKFYTLT 218 (245)
Q Consensus 203 ------~l~~~~v~-~grLYtl~ 218 (245)
.---++|. ++++|+|.
T Consensus 118 pVfy~~~~~~l~Veid~r~YtL~ 140 (144)
T PF10657_consen 118 PVFYNSLTRQLCVEIDRRTYTLD 140 (144)
T ss_pred ceEEccCCcEEEEEECCeEEehH
Confidence 11234554 89999984
No 22
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=34.54 E-value=32 Score=24.35 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=23.4
Q ss_pred EEEEeeeeccCCceeEE---EEEEEeCCCCccEEEEEEEEECCEEEE
Q 025977 173 KIIAASENDVDGKAYYA---FEFTAQAPNYIRHALGVVTVGNGKFYT 216 (245)
Q Consensus 173 ~ll~a~~~~~~G~~YY~---~Ey~~~~~~~~rH~l~~~~v~~grLYt 216 (245)
+||++.+.++||++|+- +=-++..+.-. .-+.+.||+|+.
T Consensus 3 KvLskG~h~IdGk~y~v~kDlYd~VpK~~~~----~~~~v~dg~v~v 45 (65)
T PF09211_consen 3 KVLSKGEHTIDGKKYYVKKDLYDVVPKGKKP----YKLKVKDGKVHV 45 (65)
T ss_dssp EEE-SEEEEETTEEEEESS-EEEEEETT--G----SEEEEETTEEEE
T ss_pred ccccCccEEECCEEEEecCChhhhccCCCcc----ceEEEeCCEEEE
Confidence 68999999999998774 11122221111 344667787765
No 23
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=29.77 E-value=39 Score=21.49 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=8.8
Q ss_pred CcchhHHHHHHHH
Q 025977 61 KCGRRQMIAVGVI 73 (245)
Q Consensus 61 ~~~RR~~l~~~~~ 73 (245)
.++||++|...++
T Consensus 5 dm~RR~lmN~ll~ 17 (39)
T PF08802_consen 5 DMSRRQLMNLLLG 17 (39)
T ss_dssp -HHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHH
Confidence 4689999965544
No 24
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.07 E-value=34 Score=28.41 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=15.4
Q ss_pred CCcccCChHHHHHHHHHh
Q 025977 146 DIRDFGPPQEVAETLIKK 163 (245)
Q Consensus 146 si~d~Gspeeva~~ll~~ 163 (245)
-++++|+|+++|..++.+
T Consensus 46 ii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 46 IIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHcCCHHHHHHHHHHh
Confidence 368999999999998765
No 25
>PF12559 Inhibitor_I10: Serine endopeptidase inhibitors; InterPro: IPR022217 This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularise the molecule giving it its inhibitory conformation. ; PDB: 1IXU_A.
Probab=25.54 E-value=27 Score=24.04 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=4.0
Q ss_pred CeEEEccCCceE
Q 025977 104 GYSFVYPFGWQE 115 (245)
Q Consensus 104 gysf~yP~~W~e 115 (245)
.++..||++|.+
T Consensus 44 ~~TlKyPSD~ee 55 (56)
T PF12559_consen 44 IQTLKYPSDWEE 55 (56)
T ss_dssp -----SS-SS--
T ss_pred CcceeCCCcccc
Confidence 489999999975
No 26
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=25.04 E-value=86 Score=29.07 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=9.7
Q ss_pred cchhHHHHHHHHHHH
Q 025977 62 CGRRQMIAVGVIAPW 76 (245)
Q Consensus 62 ~~RR~~l~~~~~aa~ 76 (245)
+.||.+|..++++++
T Consensus 1 ~~RR~fl~~~~~~~~ 15 (328)
T PRK10882 1 MNRRNFLKAASAGAL 15 (328)
T ss_pred CCHHHHHHHHHHHHH
Confidence 369999975544433
No 27
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=24.33 E-value=91 Score=25.05 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=8.3
Q ss_pred CCcchhHHHHHHHH
Q 025977 60 DKCGRRQMIAVGVI 73 (245)
Q Consensus 60 ~~~~RR~~l~~~~~ 73 (245)
...+||.+|..+++
T Consensus 26 ~~~grraa~~~Laa 39 (139)
T PLN00054 26 ASDGRRAALVGLAA 39 (139)
T ss_pred cccchHHHHHHHHH
Confidence 34468887765443
No 28
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=23.49 E-value=1.5e+02 Score=18.34 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.3
Q ss_pred CCEEEEEEEEecchhhhhhhHHHHHhhc
Q 025977 211 NGKFYTLTTGANERRWGKMKDRLQTVIE 238 (245)
Q Consensus 211 ~grLYtl~~qape~~w~k~~~~l~~iv~ 238 (245)
||..|.+.+-..+..=+...+++.+++.
T Consensus 8 G~Tty~V~~~F~~~s~et~~DKi~rli~ 35 (37)
T PF14202_consen 8 GKTTYVVEVHFSETSKETMQDKIKRLIR 35 (37)
T ss_pred CCEEEEEEEEECCCccccHHHHHHHHHh
Confidence 7889999999999888888988888764
No 29
>PLN00064 photosystem II protein Psb27; Provisional
Probab=22.69 E-value=73 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=17.3
Q ss_pred cCCcchhHHHHHHHHHHHhhhcCCCCcCcc
Q 025977 59 LDKCGRRQMIAVGVIAPWVSLVNQTPPSFA 88 (245)
Q Consensus 59 ~~~~~RR~~l~~~~~aa~~~~~~~~~~a~A 88 (245)
+....||++|..+.++.....+.+..+++|
T Consensus 31 ~~~~~rr~~~~~~~~~~~~~~~~~~~~a~a 60 (166)
T PLN00064 31 RNHLLRREFLSLATTILTSAALLPVAPAFA 60 (166)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhccCcchhh
Confidence 445579999986655433333334445555
No 30
>COG4102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.13 E-value=66 Score=30.40 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=29.3
Q ss_pred CccCCcchhHHHHHHHHHHHhhhcCCCCcCccccccCCceee-----eeCCCCeEEEccC
Q 025977 57 NSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSV-----TDKKDGYSFVYPF 111 (245)
Q Consensus 57 ~~~~~~~RR~~l~~~~~aa~~~~~~~~~~a~A~~~~~gf~~y-----~D~~~gysf~yP~ 111 (245)
|+....+||.+|+.++++.++...++.-.+.|.+...+|+.. .---||-+..+|-
T Consensus 2 ~~~~~psRR~~Lg~G~algl~~a~~~~~a~aa~e~r~~rk~lV~i~LrGg~Dgln~v~pv 61 (418)
T COG4102 2 CETRTPSRRALLGAGAALGLAWALSGVFAAAASENRDPRKALVCIILRGGNDGLNAVVPV 61 (418)
T ss_pred CCCCCccHHHHhhcchhhhhhhhhhhHHHhhhhcCCCCcceEEEEEEecCcccccccCCC
Confidence 455677899999877665444333333333344455555311 1223455555554
No 31
>COG3212 Predicted membrane protein [Function unknown]
Probab=20.65 E-value=4.7e+02 Score=21.24 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=14.3
Q ss_pred EEEEeeeeccCCceeEEEEEE
Q 025977 173 KIIAASENDVDGKAYYAFEFT 193 (245)
Q Consensus 173 ~ll~a~~~~~~G~~YY~~Ey~ 193 (245)
++.+..-...+|+.+|.+|+.
T Consensus 99 ~v~dieLe~~~g~~vYevei~ 119 (144)
T COG3212 99 KVDDIELEEDNGRLVYEVEIV 119 (144)
T ss_pred ceeEEEEeccCCEEEEEEEEE
Confidence 666666556678877777764
No 32
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.49 E-value=1.4e+02 Score=20.88 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=7.8
Q ss_pred CCeEEEccCCce
Q 025977 103 DGYSFVYPFGWQ 114 (245)
Q Consensus 103 ~gysf~yP~~W~ 114 (245)
-..++..|+||.
T Consensus 24 v~~~l~~P~GW~ 35 (78)
T PF10633_consen 24 VSLSLSLPEGWT 35 (78)
T ss_dssp -EEEEE--TTSE
T ss_pred EEEEEeCCCCcc
Confidence 457788999999
Done!