Query 025977
Match_columns 245
No_of_seqs 180 out of 386
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 21:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 1.7E-39 5.9E-44 268.9 20.4 153 91-243 4-165 (165)
2 1v2b_A 23-kDa polypeptide of p 100.0 1.6E-38 5.5E-43 266.5 13.6 152 90-243 4-177 (177)
3 2lnj_A SLL1418 protein, putati 100.0 1.9E-40 6.5E-45 276.4 0.0 154 90-243 9-170 (170)
4 1tu1_A Hypothetical protein PA 99.1 9.1E-09 3.1E-13 83.0 16.5 137 95-243 3-142 (148)
5 3lyd_A Uncharacterized protein 98.2 9E-05 3.1E-09 60.5 15.8 133 103-243 18-158 (161)
6 3hlz_A Uncharacterized protein 83.5 20 0.00069 30.6 12.5 121 96-244 5-134 (269)
7 2pq4_B Periplasmic nitrate red 57.7 11 0.00037 22.5 3.1 11 62-72 3-13 (35)
8 3ld7_A LIN0431 protein; DUF131 26.6 1.8E+02 0.0063 21.0 6.3 21 205-225 43-63 (101)
9 3k44_A Purine-rich binding pro 25.9 2.2E+02 0.0075 22.2 6.9 63 174-240 81-143 (146)
10 2aen_A Hemagglutinin, outer ca 24.5 2.3E+02 0.008 22.5 6.8 49 170-224 76-124 (164)
11 4drr_A Outer capsid protein VP 24.1 1.8E+02 0.0061 23.2 6.1 48 171-224 76-123 (163)
12 1q90_R Cytochrome B6-F complex 23.7 48 0.0016 21.1 2.2 15 58-72 5-19 (49)
13 1kqr_A VP4; spike protein, out 22.4 2E+02 0.0067 23.3 6.1 48 171-224 92-139 (179)
14 3stb_C RNA-editing complex pro 21.1 1.2E+02 0.0042 23.7 4.6 46 145-194 88-137 (148)
15 3ul5_A Canecystatin-1; defense 20.8 2.4E+02 0.0081 21.7 6.2 27 169-196 81-107 (139)
16 4aay_B AROB; oxidoreductase, r 20.0 22 0.00076 28.6 0.0 15 60-74 8-22 (175)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=1.7e-39 Score=268.93 Aligned_cols=153 Identities=37% Similarity=0.735 Sum_probs=142.1
Q ss_pred ccCCceeeeeCCCCeEEEccCCceEEeee-cceeEEecCCCCcceeEEEEecCCC-CCCcccCChHHHHHHHHHhhcCCC
Q 025977 91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKFLAPP 168 (245)
Q Consensus 91 ~~~gf~~y~D~~~gysf~yP~~W~e~~~~-G~~~~f~d~~~~~~nVsV~v~P~~~-~si~d~Gspeeva~~ll~~~~~~~ 168 (245)
.+.||++|.|+.+||+|.||++|++..++ |++++|+|+.+..+||+|+|.|.++ ++|++||+|+++++.|+++.++++
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~ 83 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS 83 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence 46799999999999999999999999887 9999999999988999999999875 899999999999999999988755
Q ss_pred --CCceEEEEeeeeccCCceeEEEEEEEeCCC-----CccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccce
Q 025977 169 --TQKTKIIAASENDVDGKAYYAFEFTAQAPN-----YIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFK 241 (245)
Q Consensus 169 --~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~-----~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~ 241 (245)
++.++|+++.+++.+|++||+|||+++.+. +.||.|+++++++|+||+|++|+||++|+++++.|++|++||+
T Consensus 84 ~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~~~~~l~~v~~SF~ 163 (165)
T 2xb3_A 84 ESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFT 163 (165)
T ss_dssp TSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHHHHHHHHHHHHTCE
T ss_pred CCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhHHHHHHHHHHHhhEE
Confidence 688999999999999999999999998877 8999999999999999999999999999999999999999999
Q ss_pred ee
Q 025977 242 IS 243 (245)
Q Consensus 242 v~ 243 (245)
++
T Consensus 164 v~ 165 (165)
T 2xb3_A 164 VY 165 (165)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=1.6e-38 Score=266.50 Aligned_cols=152 Identities=26% Similarity=0.482 Sum_probs=128.4
Q ss_pred cccCCceeeeeCCCCeEEEccCCceEE---eeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHH----HHH
Q 025977 90 ESNKGFLSVTDKKDGYSFVYPFGWQEV---IIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAET----LIK 162 (245)
Q Consensus 90 ~~~~gf~~y~D~~~gysf~yP~~W~e~---~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~----ll~ 162 (245)
+++.||++|. .+||+|.||.+|++. ..+|++++|+|+.+..+||+|+|.|+++++|+|||+|++|++. |++
T Consensus 4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~ 81 (177)
T 1v2b_A 4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR 81 (177)
T ss_dssp ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--
T ss_pred CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHH
Confidence 4678999997 899999999999954 3569999999999999999999999988999999999996555 455
Q ss_pred hhcCCC-----------CCceEEEEeeeeccCCceeEEEEEEEeCCC---CccEEEEEEEEECCEEEEEEEEecchhhhh
Q 025977 163 KFLAPP-----------TQKTKIIAASENDVDGKAYYAFEFTAQAPN---YIRHALGVVTVGNGKFYTLTTGANERRWGK 228 (245)
Q Consensus 163 ~~~~~~-----------~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~---~~rH~l~~~~v~~grLYtl~~qape~~w~k 228 (245)
+++.+. .+.++|+++++++.||++||+|||.++.++ +.||+|++++++||+||+|++|++|++|++
T Consensus 82 ~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k 161 (177)
T 1v2b_A 82 QAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFK 161 (177)
T ss_dssp ----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCST
T ss_pred HhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhhh
Confidence 555431 266899999999999999999999998776 799999999999999999999999999999
Q ss_pred h-hHHHHHhhccceee
Q 025977 229 M-KDRLQTVIESFKIS 243 (245)
Q Consensus 229 ~-~~~l~~iv~SF~v~ 243 (245)
. ++.|++|++||+|.
T Consensus 162 ~~~~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 162 GAKKFVENTATSFSLA 177 (177)
T ss_dssp TTTHHHHHHHHTCEEC
T ss_pred hHHHHHHHHHhheecC
Confidence 5 99999999999973
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=1.9e-40 Score=276.44 Aligned_cols=154 Identities=32% Similarity=0.575 Sum_probs=144.5
Q ss_pred cccCCceeeeeCCCCeEEEccCCceEEeee----cceeEEecCCCCcceeEEEEecCCC-CCCcccCChHHHHHHHHHhh
Q 025977 90 ESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKF 164 (245)
Q Consensus 90 ~~~~gf~~y~D~~~gysf~yP~~W~e~~~~----G~~~~f~d~~~~~~nVsV~v~P~~~-~si~d~Gspeeva~~ll~~~ 164 (245)
+.+.||++|.|+.+||+|.||++|+++.++ |++++|+|+.+..+||+|+|+|+++ ++|+|||+|++++++|++++
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~ 88 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV 88 (170)
Confidence 356799999999999999999999988776 8999999999999999999999976 99999999999999999988
Q ss_pred cCCC--CCceEEEEeeeeccCCceeEEEEEEEeCC-CCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccce
Q 025977 165 LAPP--TQKTKIIAASENDVDGKAYYAFEFTAQAP-NYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFK 241 (245)
Q Consensus 165 ~~~~--~~~~~ll~a~~~~~~G~~YY~~Ey~~~~~-~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~ 241 (245)
++++ ++.++|+++.+++.+|++||+|||+++.+ ++.||.|+++++++|+||+|++|+||++|++.++.|++|++||+
T Consensus 89 ~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~~~~~l~~v~~SF~ 168 (170)
T 2lnj_A 89 NDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFH 168 (170)
Confidence 8766 58899999999999999999999999987 78999999999999999999999999999999999999999999
Q ss_pred ee
Q 025977 242 IS 243 (245)
Q Consensus 242 v~ 243 (245)
|+
T Consensus 169 v~ 170 (170)
T 2lnj_A 169 VY 170 (170)
Confidence 85
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=99.06 E-value=9.1e-09 Score=83.00 Aligned_cols=137 Identities=9% Similarity=0.023 Sum_probs=94.8
Q ss_pred ceeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCc--ceeEEEEecCC-CCCCcccCChHHHHHHHHHhhcCCCCCc
Q 025977 95 FLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPL--ESVSVNLIPTG-KQDIRDFGPPQEVAETLIKKFLAPPTQK 171 (245)
Q Consensus 95 f~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~--~nVsV~v~P~~-~~si~d~Gspeeva~~ll~~~~~~~~~~ 171 (245)
+..|. -+.++|.+|.+|+... ..+++....++. -++.|...+.. .. +.+...++-+++... ....
T Consensus 3 m~~y~--~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~~~------~l~~~~~~q~~~l~~-~l~~ 70 (148)
T 1tu1_A 3 MTLYR--LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQGDA------PFADYVARQLENAEK-QLPG 70 (148)
T ss_dssp EEEEE--CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCTTS------CHHHHHHHHHHHHHH-HSTT
T ss_pred CceEE--ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCCCC------CHHHHHHHHHHHHHh-hCcC
Confidence 56775 7999999999999543 344443322222 34555544442 23 344444443222110 1123
Q ss_pred eEEEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceee
Q 025977 172 TKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKIS 243 (245)
Q Consensus 172 ~~ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~ 243 (245)
.+++.....+.+|.+...|||++...+..+|.+.++.+.++++|+|+++++...|+..++.++.|++||++.
T Consensus 71 y~~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~~ 142 (148)
T 1tu1_A 71 FKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPR 142 (148)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEEC
T ss_pred cEEeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhcccC
Confidence 445544444457889999999999878888999999998779999999999999999999999999999974
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=98.19 E-value=9e-05 Score=60.52 Aligned_cols=133 Identities=13% Similarity=0.136 Sum_probs=87.3
Q ss_pred CCeEEEccCCceEEeeecceeEEe-cC--CCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEEEeee
Q 025977 103 DGYSFVYPFGWQEVIIEGQDKVFK-DV--IEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKIIAASE 179 (245)
Q Consensus 103 ~gysf~yP~~W~e~~~~G~~~~f~-d~--~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll~a~~ 179 (245)
-++++..|.||+.....|.-.... +. .+-.-|+-|++.-... + + .|+.... +.+..+ .....++++-..
T Consensus 18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~-~---~--~e~~r~e-l~~~~~-~lp~~~~~~r~~ 89 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT-G---A--LHNQRTE-LDQRAT-QLPDYAERGRTE 89 (161)
T ss_dssp CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT-T---H--HHHHHHH-HHHHHT-TSTTCEEEEEEE
T ss_pred ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc-H---H--HHHHHHH-HHHHHh-hCCCcEeecccc
Confidence 579999999999876545422222 21 1235677777765431 1 2 2333322 333222 122455655555
Q ss_pred eccCCceeEEEEEEEeCCCCccEE--EEEEEEE-CCEEEEE--EEEecchhhhhhhHHHHHhhccceee
Q 025977 180 NDVDGKAYYAFEFTAQAPNYIRHA--LGVVTVG-NGKFYTL--TTGANERRWGKMKDRLQTVIESFKIS 243 (245)
Q Consensus 180 ~~~~G~~YY~~Ey~~~~~~~~rH~--l~~~~v~-~grLYtl--~~qape~~w~k~~~~l~~iv~SF~v~ 243 (245)
.+.+|.+.+..||.+..++.+.+. +..+.+. ++..|.+ ++++.+.+-+...+.++.|++||++.
T Consensus 90 ~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~ 158 (161)
T 3lyd_A 90 TTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQ 158 (161)
T ss_dssp EEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred cccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence 578999999999999877777762 3444444 6665555 99999999999999999999999985
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.52 E-value=20 Score=30.57 Aligned_cols=121 Identities=13% Similarity=0.162 Sum_probs=65.5
Q ss_pred eeeeeCCCCeEEEccCCceEEeeecceeEEecCCCCcceeEEEEecCCCCCCcccCChHHHHHHHHHhhcCCCCCceEEE
Q 025977 96 LSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLIKKFLAPPTQKTKII 175 (245)
Q Consensus 96 ~~y~D~~~gysf~yP~~W~e~~~~G~~~~f~d~~~~~~nVsV~v~P~~~~si~d~Gspeeva~~ll~~~~~~~~~~~~ll 175 (245)
+.|..++.=|+..||.+|.|.+-.--.-.|.||..=..|..+.--- | -...+...+++.+. .+..++++
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk---------~-~~~yg~~~~~~El~-en~sa~~v 73 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK---------G-NASYGKDAIRQELK-ENDSASLV 73 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE---------C-STTHHHHHHHHHHH-HCTTCEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc---------C-chhhHHHHHHHHHh-cCCCceEE
Confidence 3466667779999999999886432345677887766776544321 1 11233334444332 22334444
Q ss_pred Eee---------eeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccceeee
Q 025977 176 AAS---------ENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESFKISN 244 (245)
Q Consensus 176 ~a~---------~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF~v~~ 244 (245)
... ....+|. || ..|... +-.++--+-|..+.+-..= ...-+.|+.|..+.+
T Consensus 74 kvg~~~caYs~e~F~Eeg~-~y-----------tsH~Wi--tG~~~~afeCsFTv~kg~~---~~~aE~iiasL~vR~ 134 (269)
T 3hlz_A 74 KIGTWDCAYSKEMFQEEGT-YY-----------TSHLWI--TGTGNIAFECSFTVPKGGS---AKEAEEVIATLEARK 134 (269)
T ss_dssp EETTEEEEEEEEEEEETTE-EE-----------EEEEEE--EEETTEEEEEEEEEETTCC---CHHHHHHHHHCEECC
T ss_pred EeccEeeeehHhhhhhcCe-eE-----------EEEEEE--eccCceEEEEEEEecCCCC---cchHHHHHhHheehh
Confidence 322 1234443 43 334433 2346677777777764322 234566777776653
No 7
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=57.67 E-value=11 Score=22.45 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=8.2
Q ss_pred cchhHHHHHHH
Q 025977 62 CGRRQMIAVGV 72 (245)
Q Consensus 62 ~~RR~~l~~~~ 72 (245)
++||.+|...+
T Consensus 3 lsRR~FLK~~a 13 (35)
T 2pq4_B 3 LSRRSFMKANA 13 (35)
T ss_dssp CCSHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 57999996443
No 8
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=26.62 E-value=1.8e+02 Score=21.00 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=18.2
Q ss_pred EEEEEECCEEEEEEEEecchh
Q 025977 205 GVVTVGNGKFYTLTTGANERR 225 (245)
Q Consensus 205 ~~~~v~~grLYtl~~qape~~ 225 (245)
..+-++||+....-+.||+.-
T Consensus 43 n~ieI~dg~vrv~es~CPdki 63 (101)
T 3ld7_A 43 NLMEVDGERIRIKEDNSPDQV 63 (101)
T ss_dssp EEEEEETTEEEEEEECCSSCH
T ss_pred EEEEEECCEEEEEECCCCCcc
Confidence 567889999999999999863
No 9
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=25.94 E-value=2.2e+02 Score=22.20 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=39.6
Q ss_pred EEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecchhhhhhhHHHHHhhccc
Q 025977 174 IIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANERRWGKMKDRLQTVIESF 240 (245)
Q Consensus 174 ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~~w~k~~~~l~~iv~SF 240 (245)
.+.+.....+.+.|| |+.--.. .-|.|-+-=+....-|--++..|++-|.+-++.|..+++-|
T Consensus 81 ~l~s~~i~~~~k~fy-fDl~~N~---RGrFLRIsE~~~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~ 143 (146)
T 3k44_A 81 KLKSEMMIKDYRRYY-LDLKENA---RGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEF 143 (146)
T ss_dssp EEEEEEEEETTEEEE-EEEEEET---TEEEEEEEEEESSCCCCEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred cccchheeccCceEE-EEecccC---cceEEEEEEeeccCCCcceEEecHHHHHHHHHHHHHHHHHh
Confidence 344444456788776 7775322 23444333332111267788889999999999998888765
No 10
>2aen_A Hemagglutinin, outer capsid protein VP4, VP8* core; neutralization antigen, spike protein; 1.60A {Human rotavirus A} PDB: 2dwr_A
Probab=24.50 E-value=2.3e+02 Score=22.52 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=31.7
Q ss_pred CceEEEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecch
Q 025977 170 QKTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANER 224 (245)
Q Consensus 170 ~~~~ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~ 224 (245)
++.|.+|.-....+| .|..+.-... -|-|..+--.+||||+....+|-.
T Consensus 76 ~kWKF~d~~k~s~~~-~y~~~~~L~S-----~tKL~a~mK~ggrl~ty~GeTPna 124 (164)
T 2aen_A 76 DKWKFFEMFKGSSQG-DFSNRRTLTS-----SNRLVGMLKYGGRVWTFHGETPRA 124 (164)
T ss_dssp SSEEEEEEEESSTTC-CCEEEEEEEE-----SSCEEEEEEETTEEEEEEEETTSC
T ss_pred CcEEEEEEEeccCCc-ceEeeccccC-----chhheeeEecCCEEEEEECCCCCc
Confidence 466777766555555 3666664442 244555555689999999988854
No 11
>4drr_A Outer capsid protein VP4; viral protein, cell attachment factor, histo blood antigen, galectin-fold; 1.50A {Rotavirus SP} PDB: 4drv_A* 4ds0_A*
Probab=24.06 E-value=1.8e+02 Score=23.20 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=31.1
Q ss_pred ceEEEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecch
Q 025977 171 KTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANER 224 (245)
Q Consensus 171 ~~~ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~ 224 (245)
+.|.+|.-....+| .|+.+..... .|-|..+--.+||||+....+|-.
T Consensus 76 kWKF~d~~k~s~~~-~y~~~~tL~S-----~tkL~a~mK~gGrl~ty~GeTPna 123 (163)
T 4drr_A 76 LWKFILFIKLEKNG-AYSQYSTLST-----SNKLCAWMKREGRVYWYAGTTPNA 123 (163)
T ss_dssp CEEEEEEEESSTTS-CCEEEEEEEE-----SSCCEEEEEETTEEEEEEEETTSC
T ss_pred cEEEEEEEeccCCc-ceEEeeeecC-----cceeeEEEEeCCEEEEEEcCCCCc
Confidence 66777766555555 4777665442 234444445589999999988854
No 12
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=23.68 E-value=48 Score=21.14 Aligned_cols=15 Identities=7% Similarity=0.295 Sum_probs=10.3
Q ss_pred ccCCcchhHHHHHHH
Q 025977 58 SLDKCGRRQMIAVGV 72 (245)
Q Consensus 58 ~~~~~~RR~~l~~~~ 72 (245)
+...++||++|...+
T Consensus 5 ~~pdm~RRqfln~l~ 19 (49)
T 1q90_R 5 EVPDMNKRNIMNLIL 19 (49)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHH
Confidence 345578999995443
No 13
>1kqr_A VP4; spike protein, outer capsid, sialic AC hemagglutinin, cell attachment, neutralization antigen, LEC galectin fold, viral protein; HET: MNA; 1.40A {Rhesus rotavirus} SCOP: b.29.1.14 PDB: 2p3k_A* 2p3i_A* 2p3j_A* 3sit_A* 3sis_A* 2i2s_A*
Probab=22.35 E-value=2e+02 Score=23.26 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=30.8
Q ss_pred ceEEEEeeeeccCCceeEEEEEEEeCCCCccEEEEEEEEECCEEEEEEEEecch
Q 025977 171 KTKIIAASENDVDGKAYYAFEFTAQAPNYIRHALGVVTVGNGKFYTLTTGANER 224 (245)
Q Consensus 171 ~~~ll~a~~~~~~G~~YY~~Ey~~~~~~~~rH~l~~~~v~~grLYtl~~qape~ 224 (245)
+.|.+|......+| .|..+.-.+.. |-|..+--.+||||+....+|-.
T Consensus 92 kWKFid~~k~s~~~-~Y~~~~~L~S~-----tKL~a~mK~gGrl~ty~GeTPna 139 (179)
T 1kqr_A 92 QWKFIDVVKTTQNG-SYSQYGPLQST-----PKLYAVMKHNGKIYTYNGETPNV 139 (179)
T ss_dssp SEEEEEEEESSTTS-CCEEEEEEEES-----SCCEEEEEETTEEEEEEEETTSC
T ss_pred cEEEEEEEeccCCc-ceEeecccccc-----hheeeeEecCCEEEEEEccCCCc
Confidence 56777766555555 37766654422 33444445689999999988854
No 14
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=21.11 E-value=1.2e+02 Score=23.73 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=26.7
Q ss_pred CCCcccCChHHHHHHHHHhhcCCCCCceEE---EEeeee-ccCCceeEEEEEEE
Q 025977 145 QDIRDFGPPQEVAETLIKKFLAPPTQKTKI---IAASEN-DVDGKAYYAFEFTA 194 (245)
Q Consensus 145 ~si~d~Gspeeva~~ll~~~~~~~~~~~~l---l~a~~~-~~~G~~YY~~Ey~~ 194 (245)
..|.-|| ...|+.+ .+.+. .|+..-| |.+.+. +.+|+.||.|.|..
T Consensus 88 ~~V~vfG--g~lAE~i-~~ylk-kG~rVlVeGRLrmn~~~d~~gkk~Y~~p~i~ 137 (148)
T 3stb_C 88 HTVRVFD--SDYSSRV-KEQLR-DGEWFLVTGRLRMVPQYDGSMRKYYHYPVIQ 137 (148)
T ss_dssp EEEEECS--HHHHHHH-HHHCC-TTCEEEEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEEC--ChHHHHH-HHHhc-CCCEEEEEEEEEcceeECCCCCEEeeccEEE
Confidence 3466677 5666643 34443 2333322 223333 67899999999975
No 15
>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*
Probab=20.78 E-value=2.4e+02 Score=21.72 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=19.2
Q ss_pred CCceEEEEeeeeccCCceeEEEEEEEeC
Q 025977 169 TQKTKIIAASENDVDGKAYYAFEFTAQA 196 (245)
Q Consensus 169 ~~~~~ll~a~~~~~~G~~YY~~Ey~~~~ 196 (245)
..-.++++++...+.|..| .+++.+..
T Consensus 81 l~~~kVv~a~sQVVAG~nY-~L~V~a~d 107 (139)
T 3ul5_A 81 LEFERLVKVRHQVVAGTMH-HFTVQVKE 107 (139)
T ss_dssp CEEEEEEEEEEEEEEEEEE-EEEEEEEC
T ss_pred eeEEEEEEEEEEEecCEEE-EEEEEEec
Confidence 4556888888877888754 57776654
No 16
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=20.01 E-value=22 Score=28.60 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHH
Q 025977 60 DKCGRRQMIAVGVIA 74 (245)
Q Consensus 60 ~~~~RR~~l~~~~~a 74 (245)
..++||++|..+++|
T Consensus 8 ~~~~rr~fl~~~~~a 22 (175)
T 4aay_B 8 VDIGRRQFLRGGALA 22 (175)
T ss_dssp ---------------
T ss_pred ccccHHHHhhhhHHh
Confidence 467899999744333
Done!