BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025978
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 158/242 (65%), Gaps = 8/242 (3%)
Query: 1 MGTVVTIAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLV-GSDFVGDIPLYQK 59
+GT++T+ R EG +L+NG++AGL RQ + +RIGLYD VK F GS+ G + +
Sbjct: 51 LGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSR 107
Query: 60 IFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWT 119
+ A TGA+A+ VA PTD+VKVR QA+ + G RRY ++AY TI R+EG+ LW
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG--RRYQSTVEAYKTIAREEGIRGLWK 165
Query: 120 GLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPIDV 179
G PN+ARNAIVN AEL +YD +K+T+LK TD++ H + GAG I SP+DV
Sbjct: 166 GTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDV 225
Query: 180 VKSRMMGDS--AYKNTVDCFIKTLKYEGFLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKV 237
VK+R M + Y + C + L+ EG AFYKGF+P+F RLGSWNV+MF+T EQ K+
Sbjct: 226 VKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRA 285
Query: 238 FI 239
+
Sbjct: 286 LM 287
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 59 KIFAALLTGAIAIVVANPTDLVKVRLQAEGK----LPSGVPRRYYGALDAYCTIVRQEGL 114
K A IA ++ P D KVRLQ +G+ + + +Y G L T+VR EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 115 GALWTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIG 174
+L+ GL + R + + YD VK+ K I + +LAG G AV +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALAVAVA 122
Query: 175 SPIDVVKSRMM------GDSAYKNTVDCFIKTLKYEGFLAFYKGFLPNFSRLGSWNVIMF 228
P DVVK R G Y++TV+ + + EG +KG PN +R N
Sbjct: 123 QPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182
Query: 229 LTLEQAKKVFIR 240
+T + K ++
Sbjct: 183 VTYDLIKDTLLK 194
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 94/229 (41%), Gaps = 19/229 (8%)
Query: 4 VVTIAREEGLWALWNGVIAGLHRQCIYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAA 63
VV I +E+G + W G +A + R L D K +G V + + FA
Sbjct: 57 VVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG--VDRHKQFWRYFAG 114
Query: 64 LLT-----GAIAIVVANPTDLVKVRLQAE-GKLPSGVPRRYYGALDAYCTIVRQEGLGAL 117
L GA ++ P D + RL A+ GK R + G + I + +GL L
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCITKIFKSDGLRGL 172
Query: 118 WTGLGPNIARNAIVNAAELASYDQVKETILKIPGFTDNIFTHILAGLGAGLFAVCIGSPI 177
+ G ++ I AA YD K +L P I + ++A + A + P
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAK-GMLPDPKNVHIIVSWMIAQTVTAV-AGLVSYPF 230
Query: 178 DVVKSRMM-------GDSAYKNTVDCFIKTLKYEGFLAFYKGFLPNFSR 219
D V+ RMM D Y TVDC+ K K EG AF+KG N R
Sbjct: 231 DTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 12/172 (6%)
Query: 54 IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPS-GVPRRYYGALDAYCTIVRQE 112
+ + A + AI+ P + VK+ LQ + ++Y G +D I +++
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 113 GLGALWTGLGPNIARNAIVNAAELASYDQVKETIL----KIPGFTDNIFTHILAGLGAGL 168
G + W G N+ R A A D+ K+ L + F ++ +G AG
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124
Query: 169 FAVCIGSPIDVVKSRMMGD-------SAYKNTVDCFIKTLKYEGFLAFYKGF 213
++C P+D ++R+ D + +C K K +G Y+GF
Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 155 NIFTHILAGLGAGLFAVCIGSPIDVVK---------SRMMGDSAYKNTVDCFIKTLKYEG 205
+ LAG A + +PI+ VK ++ + YK +DC ++ K +G
Sbjct: 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG 65
Query: 206 FLAFYKGFLPNFSRLGSWNVIMFLTLEQAKKVFI 239
FL+F++G L N R + F ++ K++F+
Sbjct: 66 FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 99
>pdb|3OT5|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|C Chain C, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|D Chain D, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
Length = 403
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 65 LTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQEGLGALWTGLGPN 124
LTG +A + +PT K L AEGK P+ + A+DA T V+++ + LG N
Sbjct: 165 LTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENLGDN 224
>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose
Length = 524
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 180 VKSRMMGDSAYKNTVDCFI----KTLKYEGFLAFYKGF 213
+S M D AYKNTV+C KT+ +G LA Y
Sbjct: 268 TESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSL 305
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 30 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 85
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 30 YGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQ 85
+ GL GL D + L G+D + D+ + K AA A ANPT L ++ +Q
Sbjct: 528 HAGLAFGL-DRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQ 582
>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter
Length = 524
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 156 IFTHILAGLGAGLFAVCIGS-PIDVVKSRMMGD-------SAYKNTVDCFIKTLKYEGFL 207
IF H + G GLF + +GS I + S MGD S + D F T+ + F
Sbjct: 104 IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF 163
Query: 208 A 208
A
Sbjct: 164 A 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,394,702
Number of Sequences: 62578
Number of extensions: 309732
Number of successful extensions: 1031
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 10
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)