AmiGO: BLAST Results


BLAST match view associations BLAST with RPT3 RPT3 RPT3 AT5G58290	protein from Arabidopsis thaliana	1.4e-105
BLAST match view associations BLAST with Rpt3 Rpt3 Rpt3 Regulatory particle triple-A ATPase 3	protein from Drosophila melanogaster	2.5e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	3.1e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	3.1e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 Uncharacterized protein	protein from Canis lupus familiaris	3.1e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Homo sapiens	3.1e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Macaca fascicularis	3.1e-90
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein from Mus musculus	3.1e-90
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene from Rattus norvegicus	3.1e-90
BLAST match view associations BLAST with psmc4 psmc4 psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene_product from Danio rerio	3.1e-90
BLAST match view associations BLAST with Rpt3R Rpt3R Rpt3R Regulatory particle triple-A ATPase 3-related	protein from Drosophila melanogaster	3.1e-83
BLAST match view associations BLAST with PR26 PR26 PR26	gene_product from Candida albicans	1.3e-82
BLAST match view associations BLAST with PR26 PR26 PR26 Likely 26S proteasome regulatory particle ATPase Rpt3p	protein from Candida albicans SC5314	1.3e-82
BLAST match view associations BLAST with psmC4 psmC4 psmC4 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	1.7e-82
BLAST match view associations BLAST with RPT3 RPT3 RPT3 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.8e-80
BLAST match view associations BLAST with rpt-3 rpt-3 rpt-3	gene from Caenorhabditis elegans	7.6e-80
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26s proteasome aaa-ATPase subunit Rpt3, putative	gene from Plasmodium falciparum	7.3e-75
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26S proteasome AAA-ATPase subunit RPT3, putative	protein from Plasmodium falciparum 3D7	7.3e-75
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	gene from Plasmodium falciparum	3.3e-47
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	protein from Plasmodium falciparum 3D7	3.3e-47
BLAST match view associations BLAST with RPT2 RPT2 RPT2	gene_product from Candida albicans	4.2e-47
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Proteasome (Prosome, macropain) 26S subunit, ATPase, 1	protein from Bos taurus	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Sus scrofa	1.1e-46
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 protease (prosome, macropain) 26S subunit, ATPase 1	protein from Mus musculus	1.1e-46
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1	gene from Rattus norvegicus	1.1e-46
BLAST match view associations BLAST with RPT2 RPT2 RPT2 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.1e-46
BLAST match view associations BLAST with RPT2b RPT2b RPT2b regulatory particle AAA-ATPase 2b	protein from Arabidopsis thaliana	1.1e-46
BLAST match view associations BLAST with RPT2a RPT2a RPT2a regulatory particle AAA-ATPase 2A	protein from Arabidopsis thaliana	1.1e-46
BLAST match view associations BLAST with Rpt2 Rpt2 Rpt2 Regulatory particle triple-A ATPase 2	protein from Drosophila melanogaster	1.8e-46
BLAST match view associations BLAST with psmc1a psmc1a psmc1a proteasome (prosome, macropain) 26S subunit, ATPase, 1a	gene_product from Danio rerio	3.8e-46
BLAST match view associations BLAST with rpt-2 rpt-2 rpt-2	gene from Caenorhabditis elegans	1.3e-45
BLAST match view associations BLAST with psmc1b psmc1b psmc1b proteasome (prosome, macropain) 26S subunit, ATPase, 1b	gene_product from Danio rerio	1.6e-45
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	2.7e-45
BLAST match view associations BLAST with psmC1 psmC1 psmC1 TAT binding protein alpha	gene from Dictyostelium discoideum	4.5e-43
BLAST match view associations BLAST with pan pan pan Proteasome-activating nucleotidase	protein from Methanocaldococcus jannaschii DSM 2661	4.0e-42
BLAST match view associations BLAST with Rpt6R Rpt6R Rpt6R Regulatory particle triple-A ATPase 6-related	protein from Drosophila melanogaster	2.7e-36
BLAST match view associations BLAST with J9NWB0 J9NWB0 J9NWB0 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-35
BLAST match view associations BLAST with RPT6A RPT6A RPT6A regulatory particle triple-A ATPase 6A	protein from Arabidopsis thaliana	1.9e-35
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4	gene from Caenorhabditis elegans	1.9e-35
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4 Probable 26S protease regulatory subunit 10B	protein from Caenorhabditis elegans	1.9e-35
BLAST match view associations BLAST with AT5G20000 AT5G20000 AT5G20000	protein from Arabidopsis thaliana	2.4e-35
BLAST match view associations BLAST with F56F11.4 F56F11.4 F56F11.4	gene from Caenorhabditis elegans	3.1e-35
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5	gene from Caenorhabditis elegans	6.3e-35
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5 Protein RPT-5	protein from Caenorhabditis elegans	6.3e-35
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Gallus gallus	6.5e-35
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Gallus gallus	6.5e-35
BLAST match view associations BLAST with RPT5B RPT5B RPT5B 26S proteasome AAA-ATPase subunit RPT5B	protein from Arabidopsis thaliana	1.3e-34
BLAST match view associations BLAST with psmc6 psmc6 psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	gene_product from Danio rerio	1.7e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Bos taurus	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Bos taurus	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Canis lupus familiaris	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Homo sapiens	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Homo sapiens	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Sus scrofa	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Ictidomys tridecemlineatus	2.2e-34
BLAST match view associations BLAST with Psmc6 Psmc6 Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein from Mus musculus	2.2e-34
BLAST match view associations BLAST with Psmc6 Psmc6 Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	gene from Rattus norvegicus	2.2e-34
BLAST match view associations BLAST with rpt-6 rpt-6 rpt-6	gene from Caenorhabditis elegans	2.2e-34
BLAST match view associations BLAST with C10G11.8 C10G11.8 C10G11.8	gene from Caenorhabditis elegans	4.6e-34
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Canis lupus familiaris	7.1e-34
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c tat-binding protein homolog	gene from Plasmodium falciparum	7.4e-34
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c Tat-binding protein homolog	protein from Plasmodium falciparum 3D7	7.4e-34
BLAST match view associations BLAST with RPT6 RPT6 RPT6	gene_product from Candida albicans	1.2e-33
BLAST match view associations BLAST with Rpt4R Rpt4R Rpt4R Regulatory particle triple-A ATPase 4-related	protein from Drosophila melanogaster	1.5e-33
BLAST match view associations BLAST with OsRPT4 OsRPT4 OsRPT4 26S proteasome regulatory particle triple-A ATPase subunit4	protein from Oryza sativa Japonica Group	2.0e-33
BLAST match view associations BLAST with RPT1A RPT1A RPT1A regulatory particle triple-A 1A	protein from Arabidopsis thaliana	2.0e-33
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	protein from Mus musculus	2.4e-33
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	gene from Rattus norvegicus	2.4e-33
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 Proteasome (Prosome, macropain) 26S subunit, ATPase 3, isoform CRA_a	protein from Rattus norvegicus	2.4e-33
BLAST match view associations BLAST with GSTENG00035021001 GSTENG00035021001 GSTENG00035021001 Chromosome 2 SCAF15106, whole genome shotgun sequence.	protein from Tetraodon nigroviridis	3.2e-33
BLAST match view associations BLAST with psmC5 psmC5 psmC5 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	4.1e-33
BLAST match view associations BLAST with psmc5 psmc5 psmc5 Putative uncharacterized protein MGC75584	protein from Xenopus (Silurana) tropicalis	4.1e-33
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Sus scrofa	4.9e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 Uncharacterized protein	protein from Gallus gallus	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Bos taurus	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Sus scrofa	5.2e-33
BLAST match view associations BLAST with Q6AZU7 Q6AZU7 Q6AZU7 Putative uncharacterized protein	protein from Xenopus laevis	5.2e-33
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5	protein from Mus musculus	5.2e-33
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene from Rattus norvegicus	5.2e-33
BLAST match view associations BLAST with psmc5 psmc5 psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene_product from Danio rerio	5.2e-33
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	6.2e-33
BLAST match view associations BLAST with RPT1 RPT1 RPT1	gene_product from Candida albicans	6.7e-33
BLAST match view associations BLAST with psmC2 psmC2 psmC2 26S proteasome ATPase 2 subunit	gene from Dictyostelium discoideum	6.7e-33
BLAST match view associations BLAST with Rpt4 Rpt4 Rpt4 Regulatory particle triple-A ATPase 4	protein from Drosophila melanogaster	1.1e-32
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025979
        (245 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2161258 - symbol:RPT3 "regulatory particle tri...  1045  1.4e-105  1
FB|FBgn0028686 - symbol:Rpt3 "Regulatory particle triple-...   901  2.5e-90   1
UNIPROTKB|F1MG70 - symbol:PSMC4 "26S protease regulatory ...   900  3.1e-90   1
UNIPROTKB|Q3T030 - symbol:PSMC4 "26S protease regulatory ...   900  3.1e-90   1
UNIPROTKB|E2RH48 - symbol:PSMC4 "Uncharacterized protein"...   900  3.1e-90   1
UNIPROTKB|P43686 - symbol:PSMC4 "26S protease regulatory ...   900  3.1e-90   1
UNIPROTKB|Q4R7L3 - symbol:PSMC4 "26S protease regulatory ...   900  3.1e-90   1
MGI|MGI:1346093 - symbol:Psmc4 "proteasome (prosome, macr...   900  3.1e-90   1
RGD|621102 - symbol:Psmc4 "proteasome (prosome, macropain...   900  3.1e-90   1
ZFIN|ZDB-GENE-030131-5083 - symbol:psmc4 "proteasome (pro...   900  3.1e-90   1
ASPGD|ASPL0000036562 - symbol:AN2904 species:162425 "Emer...   866  1.3e-86   1
POMBASE|SPCC576.10c - symbol:rpt3 "19S proteasome regulat...   837  1.5e-83   1
FB|FBgn0037742 - symbol:Rpt3R "Regulatory particle triple...   834  3.1e-83   1
CGD|CAL0001552 - symbol:PR26 species:5476 "Candida albica...   828  1.3e-82   1
UNIPROTKB|Q5A0L8 - symbol:PR26 "Likely 26S proteasome reg...   828  1.3e-82   1
DICTYBASE|DDB_G0289003 - symbol:psmC4 "HIV TAT binding-pr...   827  1.7e-82   1
SGD|S000002802 - symbol:RPT3 "ATPase of the 19S regulator...   808  1.8e-80   1
WB|WBGene00004503 - symbol:rpt-3 species:6239 "Caenorhabd...   802  7.6e-80   1
GENEDB_PFALCIPARUM|PFD0665c - symbol:PFD0665c "26s protea...   755  7.3e-75   1
UNIPROTKB|Q8I1V1 - symbol:PFD0665c "26S proteasome AAA-AT...   755  7.3e-75   1
UNIPROTKB|F1LZ09 - symbol:F1LZ09 "Uncharacterized protein...   737  5.9e-73   1
GENEDB_PFALCIPARUM|PF10_0081 - symbol:PF10_0081 "26S prot...   494  3.3e-47   1
UNIPROTKB|Q8IJW0 - symbol:PF10_0081 "26S proteasome regul...   494  3.3e-47   1
CGD|CAL0005257 - symbol:RPT2 species:5476 "Candida albica...   493  4.2e-47   1
POMBASE|SPBC4.07c - symbol:rpt2 "19S proteasome regulator...   490  8.8e-47   1
UNIPROTKB|F1NSP7 - symbol:PSMC1 "26S protease regulatory ...   489  1.1e-46   1
UNIPROTKB|F1NTZ4 - symbol:PSMC1 "26S protease regulatory ...   489  1.1e-46   1
UNIPROTKB|Q90732 - symbol:PSMC1 "26S protease regulatory ...   489  1.1e-46   1
UNIPROTKB|A4FUZ3 - symbol:PSMC1 "Proteasome (Prosome, mac...   489  1.1e-46   1
UNIPROTKB|F1PQ40 - symbol:PSMC1 "Uncharacterized protein"...   489  1.1e-46   1
UNIPROTKB|P62191 - symbol:PSMC1 "26S protease regulatory ...   489  1.1e-46   1
UNIPROTKB|F2Z5J1 - symbol:PSMC1 "Uncharacterized protein"...   489  1.1e-46   1
MGI|MGI:106054 - symbol:Psmc1 "protease (prosome, macropa...   489  1.1e-46   1
RGD|621097 - symbol:Psmc1 "proteasome (prosome, macropain...   489  1.1e-46   1
SGD|S000002165 - symbol:RPT2 "ATPase of the 19S regulator...   489  1.1e-46   1
TAIR|locus:2061639 - symbol:RPT2b "regulatory particle AA...   489  1.1e-46   1
TAIR|locus:2119926 - symbol:RPT2a "regulatory particle AA...   489  1.1e-46   1
FB|FBgn0015282 - symbol:Rpt2 "Regulatory particle triple-...   487  1.8e-46   1
ASPGD|ASPL0000049719 - symbol:AN2213 species:162425 "Emer...   457  2.9e-46   2
ZFIN|ZDB-GENE-030131-8730 - symbol:psmc1a "proteasome (pr...   484  3.8e-46   1
WB|WBGene00004502 - symbol:rpt-2 species:6239 "Caenorhabd...   479  1.3e-45   1
ZFIN|ZDB-GENE-040625-69 - symbol:psmc1b "proteasome (pros...   478  1.6e-45   1
UNIPROTKB|B4DR63 - symbol:PSMC1 "cDNA FLJ58247, highly si...   476  2.7e-45   1
DICTYBASE|DDB_G0270784 - symbol:psmC1 "TAT binding protei...   455  4.5e-43   1
UNIPROTKB|Q58576 - symbol:pan "Proteasome-activating nucl...   446  4.0e-42   1
FB|FBgn0039788 - symbol:Rpt6R "Regulatory particle triple...   391  2.7e-36   1
UNIPROTKB|J9NWB0 - symbol:J9NWB0 "Uncharacterized protein...   385  1.2e-35   1
TAIR|locus:2147670 - symbol:RPT6A "regulatory particle tr...   383  1.9e-35   1
WB|WBGene00004504 - symbol:rpt-4 species:6239 "Caenorhabd...   383  1.9e-35   1
UNIPROTKB|O17071 - symbol:rpt-4 "Probable 26S protease re...   383  1.9e-35   1
TAIR|locus:2147685 - symbol:AT5G20000 species:3702 "Arabi...   382  2.4e-35   1
WB|WBGene00018991 - symbol:F56F11.4 species:6239 "Caenorh...   381  3.1e-35   1
WB|WBGene00004505 - symbol:rpt-5 species:6239 "Caenorhabd...   334  6.3e-35   2
UNIPROTKB|O76371 - symbol:rpt-5 "Protein RPT-5" species:6...   334  6.3e-35   2
UNIPROTKB|F1NCS8 - symbol:PSMC6 "Uncharacterized protein"...   378  6.5e-35   1
UNIPROTKB|Q5ZKX2 - symbol:PSMC6 "Uncharacterized protein"...   378  6.5e-35   1
TAIR|locus:2036099 - symbol:RPT5B "26S proteasome AAA-ATP...   330  1.3e-34   2
POMBASE|SPBC23G7.12c - symbol:rpt6 "19S proteasome regula...   375  1.3e-34   1
ZFIN|ZDB-GENE-030131-304 - symbol:psmc6 "proteasome (pros...   374  1.7e-34   1
UNIPROTKB|F1MLV1 - symbol:PSMC6 "26S protease regulatory ...   373  2.2e-34   1
UNIPROTKB|Q2KIW6 - symbol:PSMC6 "26S protease regulatory ...   373  2.2e-34   1
UNIPROTKB|J9P1N0 - symbol:PSMC6 "Uncharacterized protein"...   373  2.2e-34   1
UNIPROTKB|H0YJC0 - symbol:PSMC6 "26S protease regulatory ...   373  2.2e-34   1
UNIPROTKB|P62333 - symbol:PSMC6 "26S protease regulatory ...   373  2.2e-34   1
UNIPROTKB|F1SFE6 - symbol:PSMC6 "Uncharacterized protein"...   373  2.2e-34   1
UNIPROTKB|P62335 - symbol:PSMC6 "26S protease regulatory ...   373  2.2e-34   1
MGI|MGI:1914339 - symbol:Psmc6 "proteasome (prosome, macr...   373  2.2e-34   1
RGD|1308825 - symbol:Psmc6 "proteasome (prosome, macropai...   373  2.2e-34   1
RGD|2318218 - symbol:LOC100365869 "proteasome (prosome, m...   373  2.2e-34   1
WB|WBGene00004506 - symbol:rpt-6 species:6239 "Caenorhabd...   373  2.2e-34   1
WB|WBGene00015688 - symbol:C10G11.8 species:6239 "Caenorh...   370  4.6e-34   1
UNIPROTKB|F1PBK7 - symbol:PSMC3 "Uncharacterized protein"...   331  7.1e-34   2
GENEDB_PFALCIPARUM|PFL2345c - symbol:PFL2345c "tat-bindin...   368  7.4e-34   1
UNIPROTKB|Q8I4U5 - symbol:PFL2345c "Tat-binding protein h...   368  7.4e-34   1
ASPGD|ASPL0000032311 - symbol:AN5747 species:162425 "Emer...   366  1.2e-33   1
CGD|CAL0006022 - symbol:RPT6 species:5476 "Candida albica...   366  1.2e-33   1
FB|FBgn0036224 - symbol:Rpt4R "Regulatory particle triple...   365  1.5e-33   1
UNIPROTKB|Q9FXT8 - symbol:OsRPT4 "Os02g0199900 protein" s...   364  2.0e-33   1
TAIR|locus:2024822 - symbol:RPT1A "regulatory particle tr...   364  2.0e-33   1
MGI|MGI:1098754 - symbol:Psmc3 "proteasome (prosome, macr...   331  2.4e-33   2
RGD|61905 - symbol:Psmc3 "proteasome (prosome, macropain)...   331  2.4e-33   2
UNIPROTKB|Q6P6U2 - symbol:Psmc3 "26S protease regulatory ...   331  2.4e-33   2
UNIPROTKB|Q4RG45 - symbol:GSTENG00035021001 "Chromosome 2...   362  3.2e-33   1
DICTYBASE|DDB_G0292382 - symbol:psmC5 "HIV TAT binding-pr...   361  4.1e-33   1
UNIPROTKB|Q6P380 - symbol:psmc5 "Putative uncharacterized...   361  4.1e-33   1
UNIPROTKB|F1SID4 - symbol:PSMC3 "Uncharacterized protein"...   331  4.9e-33   2
UNIPROTKB|F1NU79 - symbol:PSMC5 "Uncharacterized protein"...   360  5.2e-33   1
UNIPROTKB|P62194 - symbol:PSMC5 "26S protease regulatory ...   360  5.2e-33   1
UNIPROTKB|J3KRP2 - symbol:PSMC5 "26S protease regulatory ...   360  5.2e-33   1
UNIPROTKB|J3QSA9 - symbol:PSMC5 "26S protease regulatory ...   360  5.2e-33   1
UNIPROTKB|P62195 - symbol:PSMC5 "26S protease regulatory ...   360  5.2e-33   1
UNIPROTKB|P62197 - symbol:PSMC5 "26S protease regulatory ...   360  5.2e-33   1
UNIPROTKB|Q6AZU7 - symbol:Q6AZU7 "Putative uncharacterize...   360  5.2e-33   1
MGI|MGI:105047 - symbol:Psmc5 "protease (prosome, macropa...   360  5.2e-33   1
RGD|708376 - symbol:Psmc5 "proteasome (prosome, macropain...   360  5.2e-33   1
ZFIN|ZDB-GENE-030131-6547 - symbol:psmc5 "proteasome (pro...   360  5.2e-33   1
UNIPROTKB|P17980 - symbol:PSMC3 "26S protease regulatory ...   331  6.2e-33   2
CGD|CAL0005689 - symbol:RPT1 species:5476 "Candida albica...   359  6.7e-33   1
DICTYBASE|DDB_G0276917 - symbol:psmC2 "26S proteasome ATP...   359  6.7e-33   1
FB|FBgn0028685 - symbol:Rpt4 "Regulatory particle triple-...   357  1.1e-32   1

WARNING:  Descriptions of 528 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2161258 [details] [associations]
            symbol:RPT3 "regulatory particle triple-A ATPase 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
            "ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
            "cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
            catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
            stimulus" evidence=RCA] [GO:0009853 "photorespiration"
            evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
            evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
            IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
            ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
            PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
            KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
            KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
            GermOnline:AT5G58290 Uniprot:Q9SEI4
        Length = 408

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 212/235 (90%), Positives = 220/235 (93%)

Query:     2 AASAMVLDPKPVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKN 61
             A ++MVLDPK  + P      DL+   +DE+DLY RLKSL+RQLEF DIQEEYVKDEQKN
Sbjct:     5 AVASMVLDPK--ASP---ALMDLST--ADEEDLYGRLKSLERQLEFTDIQEEYVKDEQKN 57

Query:    62 LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPS 121
             LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPS
Sbjct:    58 LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPS 117

Query:   122 ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTH 181
             ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV+YNDIGGCDIQKQEIREAVELPLTH
Sbjct:   118 ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTH 177

Query:   182 HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE
Sbjct:   178 HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232


>FB|FBgn0028686 [details] [associations]
            symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
            "endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
            evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
            evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
            GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
            GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
            GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
            EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
            EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
            EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
            SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
            KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
            InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
            Uniprot:Q9V405
        Length = 413

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 175/207 (84%), Positives = 191/207 (92%)

Query:    30 DEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 89
             D +DLY R K LQ+ LEFI++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E 
Sbjct:    31 DMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 90

Query:    90 VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 149
             VDQN GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L 
Sbjct:    91 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 150

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
               EKPDV+Y DIGG D+QKQEIREAVELPLTH ELYKQIGIDPPRGVL+YGPPG GKTML
Sbjct:   151 PDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTML 210

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGE 236
             AKAVA+HTTA+FIRVVGSEFVQKYLGE
Sbjct:   211 AKAVAHHTTASFIRVVGSEFVQKYLGE 237


>UNIPROTKB|F1MG70 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
            IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
            Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
        Length = 417

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 174/219 (79%), Positives = 194/219 (88%)

Query:    18 PSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQ 77
             P T      +  D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRIQ
Sbjct:    23 PQTGLSFLGEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQ 82

Query:    78 SVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVL 137
             S+PLVIGQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVL
Sbjct:    83 SIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVL 142

Query:   138 PPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVL 197
             PPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGVL
Sbjct:   143 PPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVL 202

Query:   198 LYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             +YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct:   203 MYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 241


>UNIPROTKB|Q3T030 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
            RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
            SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
            CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
            ArrayExpress:Q3T030 Uniprot:Q3T030
        Length = 418

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 175/220 (79%), Positives = 196/220 (89%)

Query:    17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
             P +  S L  +  D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct:    23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82

Query:    77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
             QS+PLVIGQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct:    83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142

Query:   137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
             LPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct:   143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202

Query:   197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct:   203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242


>UNIPROTKB|E2RH48 [details] [associations]
            symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
            OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
            RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
            PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
            KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
        Length = 418

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 175/220 (79%), Positives = 196/220 (89%)

Query:    17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
             P +  S L  +  D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct:    23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82

Query:    77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
             QS+PLVIGQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct:    83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142

Query:   137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
             LPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct:   143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202

Query:   197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct:   203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242


>UNIPROTKB|P43686 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
            "ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006521 "regulation of cellular amino acid metabolic process"
            evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
            [GO:0006977 "DNA damage response, signal transduction by p53 class
            mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0006200 "ATP catabolic process" evidence=TAS]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
            GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
            GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
            EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
            OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
            EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
            IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
            RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
            ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
            MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
            OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
            Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
            KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
            HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
            neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
            PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
            GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
            CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
            Uniprot:P43686
        Length = 418

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 175/220 (79%), Positives = 196/220 (89%)

Query:    17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
             P +  S L  +  D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct:    23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82

Query:    77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
             QS+PLVIGQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct:    83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142

Query:   137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
             LPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct:   143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202

Query:   197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct:   203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242


>UNIPROTKB|Q4R7L3 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
            accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
            ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
        Length = 418

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 175/220 (79%), Positives = 196/220 (89%)

Query:    17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
             P +  S L  +  D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct:    23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82

Query:    77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
             QS+PLVIGQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct:    83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142

Query:   137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
             LPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct:   143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202

Query:   197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct:   203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242


>MGI|MGI:1346093 [details] [associations]
            symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
            OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
            EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
            EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
            UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
            SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
            REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
            Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
            InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
            Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
            Uniprot:P54775
        Length = 418

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 175/220 (79%), Positives = 196/220 (89%)

Query:    17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
             P +  S L  +  D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct:    23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82

Query:    77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
             QS+PLVIGQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct:    83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142

Query:   137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
             LPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct:   143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202

Query:   197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct:   203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242


>RGD|621102 [details] [associations]
            symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
            "blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
            evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
            accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
            process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
            OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
            EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
            UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
            SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
            PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
            KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
            EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
            GermOnline:ENSRNOG00000018994 Uniprot:Q63570
        Length = 418

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 175/220 (79%), Positives = 196/220 (89%)

Query:    17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
             P +  S L  +  D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct:    23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82

Query:    77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
             QS+PLVIGQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct:    83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142

Query:   137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
             LPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct:   143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202

Query:   197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct:   203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242


>ZFIN|ZDB-GENE-030131-5083 [details] [associations]
            symbol:psmc4 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 4" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005937
            Pfam:PF00004 SMART:SM00382 ZFIN:ZDB-GENE-030131-5083 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 EMBL:BC055215 IPI:IPI00509630
            UniGene:Dr.76514 ProteinModelPortal:Q7SXX0 SMR:Q7SXX0 STRING:Q7SXX0
            PRIDE:Q7SXX0 InParanoid:Q7SXX0 ArrayExpress:Q7SXX0 Bgee:Q7SXX0
            Uniprot:Q7SXX0
        Length = 418

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 175/227 (77%), Positives = 199/227 (87%)

Query:    10 PKPVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRA 69
             P  ++  P +  S L  +  D +DLYS  K LQ++LEF+++QEEY+KDEQKNLK+E L A
Sbjct:    16 PALLNSRPQTGLSFLAPEPEDLEDLYSIYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHA 75

Query:    70 QEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRH 129
             QEEVKRIQS+PLVIGQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+H
Sbjct:    76 QEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKH 135

Query:   130 SNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIG 189
             SNALVDVLPPEADSSI +L+  +KPDV Y+DIGG DIQKQE+REAVELPLTH ELYKQIG
Sbjct:   136 SNALVDVLPPEADSSIMMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIG 195

Query:   190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             IDPPRGVL+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct:   196 IDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242


>ASPGD|ASPL0000036562 [details] [associations]
            symbol:AN2904 species:162425 "Emericella nidulans"
            [GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
            OMA:EDAYSAQ Uniprot:C8VJ79
        Length = 422

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 166/208 (79%), Positives = 190/208 (91%)

Query:    29 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 88
             +D+ D Y+ LK LQR LE+I +QEEY+KDEQ++LKREL+RAQEE+KRIQSVPLVIGQFME
Sbjct:    36 ADDGDEYATLKKLQRHLEYIKLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFME 95

Query:    89 MVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 148
              +DQN GIV S+TGSNY VRILST++RE LKPS+SVALHRHSNALVD+LPPEADSSI++L
Sbjct:    96 AIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAML 155

Query:   149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208
              ++EKPDVTY D+GG D+QKQEIREAVELPLTH +LYKQIGIDPPRGVLLYGPPGTGKTM
Sbjct:   156 GENEKPDVTYADVGGLDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPPGTGKTM 215

Query:   209 LAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L KAVAN TTA+FIRV GSEFVQKYLGE
Sbjct:   216 LVKAVANSTTASFIRVNGSEFVQKYLGE 243


>POMBASE|SPCC576.10c [details] [associations]
            symbol:rpt3 "19S proteasome regulatory subunit Rpt3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
            "ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
            ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
            EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
            OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
        Length = 389

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 161/208 (77%), Positives = 187/208 (89%)

Query:    29 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 88
             ++E DLY+R K+L+RQLE +D+QE ++K++ K+LKREL+RAQEEVKRIQSVPLVIGQF+E
Sbjct:     4 TEEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLE 63

Query:    89 MVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 148
              +DQN  IVGSTTGSNY VRILST++RELLKPSASVAL RHSNALVD+LPPEADSSIS+L
Sbjct:    64 AIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISML 123

Query:   149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208
                E+PDV+Y D+GG D+QKQE+REAVELPLT  +LY+QIGIDPPRGVLLYGPPGTGKTM
Sbjct:   124 RPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTM 183

Query:   209 LAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L KAVAN T A FIRVVGSEFVQKYLGE
Sbjct:   184 LVKAVANSTAANFIRVVGSEFVQKYLGE 211


>FB|FBgn0037742 [details] [associations]
            symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
            species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
            PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
            GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
            GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
            RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
            EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
            KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
            OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
            Uniprot:Q9VH79
        Length = 405

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 158/207 (76%), Positives = 185/207 (89%)

Query:    30 DEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 89
             D  DLY   K LQ +LE I +QE+Y+K+EQ+NLK+E + AQEEVKRI++VPLVIGQF+E 
Sbjct:    23 DPHDLYVLYKKLQMELELIQVQEDYIKEEQRNLKKEFIHAQEEVKRIKAVPLVIGQFLEA 82

Query:    90 VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 149
             VD+NNGIV STTGSNYYVR+LSTI+RE LKPS+SV LH+ SN LVD++PPEADS+IS+LS
Sbjct:    83 VDENNGIVASTTGSNYYVRVLSTIDREQLKPSSSVGLHKQSNCLVDLVPPEADSTISMLS 142

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
               EKPD++Y+DIGG DIQKQEIREAVELPLTH +LYKQIGIDPPRGVLL+GPPG GKTML
Sbjct:   143 PDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKTML 202

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGE 236
             AKAVA+HTTA+FIRVVGSEFVQKYLGE
Sbjct:   203 AKAVAHHTTASFIRVVGSEFVQKYLGE 229


>CGD|CAL0001552 [details] [associations]
            symbol:PR26 species:5476 "Candida albicans" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0001552 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
            RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
            STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
            KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
        Length = 411

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 157/208 (75%), Positives = 188/208 (90%)

Query:    29 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 88
             S+E D+Y +LK L+++L+ + +QEEY+KDEQ++LKREL+RAQEEVKRI+SVPLVIGQF+E
Sbjct:    25 SNETDVYLKLKKLEKELDLLLLQEEYIKDEQRHLKRELVRAQEEVKRIKSVPLVIGQFLE 84

Query:    89 MVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 148
              +D+N GIV STTGSNY VRILST++RELLK S+SVALHRHSNALVD+LPPEADSSIS++
Sbjct:    85 PIDENTGIVSSTTGSNYVVRILSTLDRELLKASSSVALHRHSNALVDILPPEADSSISIV 144

Query:   149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208
              + +KPDVTY D+GG D+QKQEI+EAVELPLT  +LY QIGIDPPRGVLLYGPPGTGKTM
Sbjct:   145 GEDQKPDVTYADVGGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPRGVLLYGPPGTGKTM 204

Query:   209 LAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L KAVAN TTA+FIR+ GSEFVQKYLGE
Sbjct:   205 LVKAVANSTTASFIRINGSEFVQKYLGE 232


>UNIPROTKB|Q5A0L8 [details] [associations]
            symbol:PR26 "Likely 26S proteasome regulatory particle
            ATPase Rpt3p" species:237561 "Candida albicans SC5314" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0001552
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
            RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
            STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
            KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
        Length = 411

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 157/208 (75%), Positives = 188/208 (90%)

Query:    29 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 88
             S+E D+Y +LK L+++L+ + +QEEY+KDEQ++LKREL+RAQEEVKRI+SVPLVIGQF+E
Sbjct:    25 SNETDVYLKLKKLEKELDLLLLQEEYIKDEQRHLKRELVRAQEEVKRIKSVPLVIGQFLE 84

Query:    89 MVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 148
              +D+N GIV STTGSNY VRILST++RELLK S+SVALHRHSNALVD+LPPEADSSIS++
Sbjct:    85 PIDENTGIVSSTTGSNYVVRILSTLDRELLKASSSVALHRHSNALVDILPPEADSSISIV 144

Query:   149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208
              + +KPDVTY D+GG D+QKQEI+EAVELPLT  +LY QIGIDPPRGVLLYGPPGTGKTM
Sbjct:   145 GEDQKPDVTYADVGGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPRGVLLYGPPGTGKTM 204

Query:   209 LAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L KAVAN TTA+FIR+ GSEFVQKYLGE
Sbjct:   205 LVKAVANSTTASFIRINGSEFVQKYLGE 232


>DICTYBASE|DDB_G0289003 [details] [associations]
            symbol:psmC4 "HIV TAT binding-protein-related"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0006972 "hyperosmotic response"
            evidence=IEP] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=ISS] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS] [GO:0004175 "endopeptidase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0289003 GO:GO:0005524 GO:GO:0005634
            GO:GO:0045335 GO:GO:0006508 GenomeReviews:CM000154_GR GO:GO:0006972
            GO:GO:0004175 EMBL:AAFI02000129 GO:GO:0030163 GO:GO:0017111
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03063 OMA:DQTTNVK EMBL:L16578
            PIR:JN0611 RefSeq:XP_636422.1 ProteinModelPortal:P34123 SMR:P34123
            STRING:P34123 PRIDE:P34123 EnsemblProtists:DDB0191435
            GeneID:8626913 KEGG:ddi:DDB_G0289003 ProtClustDB:PTZ00454
            GO:GO:0005838 Uniprot:P34123
        Length = 403

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 164/206 (79%), Positives = 182/206 (88%)

Query:    31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 90
             E DLY ++KSL+ +L+F +IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMV
Sbjct:    22 EADLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMV 81

Query:    91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQ 150
             D N GIV ST+GS   VRILSTI+RELLKPSASVAL RHSNALVD LPPE+DSSI LL  
Sbjct:    82 DSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGA 141

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
              EKP  +Y+DIGG DIQKQE+REAVELPLTHH LYKQIGIDPPRGVLLYGPPGTGKTMLA
Sbjct:   142 DEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLA 201

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGE 236
             KAVA+HT+AAFIRVVGSEFVQKYLGE
Sbjct:   202 KAVAHHTSAAFIRVVGSEFVQKYLGE 227


>SGD|S000002802 [details] [associations]
            symbol:RPT3 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000002802 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006938 GO:GO:0006511 GO:GO:0017111 GO:GO:0045899 EMBL:U32274
            KO:K07101 RefSeq:NP_010687.3 GeneID:852008 KEGG:sce:YDR399W
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03063
            OMA:DQTTNVK GeneTree:ENSGT00550000074962 OrthoDB:EOG46HKKC
            EMBL:X73570 EMBL:U06229 PIR:S69678 RefSeq:NP_010682.3 PDB:2DZN
            PDB:2DZO PDBsum:2DZN PDBsum:2DZO ProteinModelPortal:P33298
            SMR:P33298 DIP:DIP-1587N IntAct:P33298 MINT:MINT-383865
            STRING:P33298 PaxDb:P33298 PeptideAtlas:P33298 EnsemblFungi:YDR394W
            GeneID:852003 KEGG:sce:YDR394W EvolutionaryTrace:P33298
            NextBio:970192 Genevestigator:P33298 GermOnline:YDR394W
            Uniprot:P33298
        Length = 428

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 154/204 (75%), Positives = 181/204 (88%)

Query:    33 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ 92
             D+Y +LK L+++ E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +DQ
Sbjct:    46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQ 105

Query:    93 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSE 152
             N GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++ ++E
Sbjct:   106 NTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENE 165

Query:   153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 212
             KPDVTY D+GG D+QKQEIREAVELPL   +LY+QIGIDPPRGVLLYGPPGTGKTML KA
Sbjct:   166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225

Query:   213 VANHTTAAFIRVVGSEFVQKYLGE 236
             VAN T AAFIRV GSEFV KYLGE
Sbjct:   226 VANSTKAAFIRVNGSEFVHKYLGE 249


>WB|WBGene00004503 [details] [associations]
            symbol:rpt-3 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
            EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
            ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
            MINT:MINT-212949 STRING:P46502 PaxDb:P46502
            EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
            KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
            GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
            Uniprot:P46502
        Length = 414

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 159/222 (71%), Positives = 188/222 (84%)

Query:    16 PP-PSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVK 74
             PP P+T  D++      DD Y +L +L+RQL  + + E+Y+K E +NL++ELL AQEEVK
Sbjct:    23 PPLPATCVDVSS-----DD-YIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVK 76

Query:    75 RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALV 134
             RIQSVPLVIGQF+E VDQN+ IVGSTTGSNYYVR+LS ++RELLKP  SVALH++SNALV
Sbjct:    77 RIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALV 136

Query:   135 DVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 194
             DVLPPEADSSI +L   EKPD++Y DIGG D+QKQE+REAVELPLTH ELY+QIGIDPPR
Sbjct:   137 DVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPR 196

Query:   195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             GVL+YGPPG GKTMLAKAVA +T A+FIRVVGSEFVQKYLGE
Sbjct:   197 GVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGE 238


>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
            symbol:PFD0665c "26s proteasome aaa-ATPase
            subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
            [GO:0005838 "proteasome regulatory particle" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
            EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
            OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
            RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
            MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
            GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
            Uniprot:Q8I1V1
        Length = 392

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 139/206 (67%), Positives = 179/206 (86%)

Query:    31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 90
             E+D Y RLK+L++Q++ ++IQE+Y+K+E KNLKREL+R++ E+KRIQSVPL+IGQF++++
Sbjct:    10 EEDYYIRLKNLKKQIDILNIQEDYIKEEHKNLKRELIRSKNEIKRIQSVPLIIGQFLDII 69

Query:    91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQ 150
             D N GIV ST GSNYYVRILST+N+E LKPS SVALHRHS+++V++LP E+DSSI LL  
Sbjct:    70 DNNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSESDSSIQLLQI 129

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
             +E+P+V Y D+GG D+QKQE++EAVELPLT  ELY++IGI+PP G+L+YGPPGTGKTML 
Sbjct:   130 TERPNVKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIEPPMGILIYGPPGTGKTMLV 189

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGE 236
             KAVAN T   FI VVGSEFVQKYLGE
Sbjct:   190 KAVANETQVTFIGVVGSEFVQKYLGE 215


>UNIPROTKB|Q8I1V1 [details] [associations]
            symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
            GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
            GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
            IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
            EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
            EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
        Length = 392

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 139/206 (67%), Positives = 179/206 (86%)

Query:    31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 90
             E+D Y RLK+L++Q++ ++IQE+Y+K+E KNLKREL+R++ E+KRIQSVPL+IGQF++++
Sbjct:    10 EEDYYIRLKNLKKQIDILNIQEDYIKEEHKNLKRELIRSKNEIKRIQSVPLIIGQFLDII 69

Query:    91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQ 150
             D N GIV ST GSNYYVRILST+N+E LKPS SVALHRHS+++V++LP E+DSSI LL  
Sbjct:    70 DNNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSESDSSIQLLQI 129

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
             +E+P+V Y D+GG D+QKQE++EAVELPLT  ELY++IGI+PP G+L+YGPPGTGKTML 
Sbjct:   130 TERPNVKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIEPPMGILIYGPPGTGKTMLV 189

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGE 236
             KAVAN T   FI VVGSEFVQKYLGE
Sbjct:   190 KAVANETQVTFIGVVGSEFVQKYLGE 215


>UNIPROTKB|F1LZ09 [details] [associations]
            symbol:F1LZ09 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR005937 Pfam:PF00004 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00780208
            Ensembl:ENSRNOT00000039743 Uniprot:F1LZ09
        Length = 369

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 142/190 (74%), Positives = 165/190 (86%)

Query:    47 FIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYY 106
             F+++QEEY+KDEQKNLK+E L AQE+VK+IQS+PLVIGQF+E VDQN  IVGS TGSN Y
Sbjct:     2 FLEVQEEYIKDEQKNLKKEFLHAQEKVKQIQSIPLVIGQFLEAVDQNTVIVGSITGSNCY 61

Query:   107 VRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDI 166
               ILSTI++ELLKP+ASVALH+HSN LV+VLPPEA+SSI +L+  +KP+V Y DIG  DI
Sbjct:    62 FCILSTIDQELLKPNASVALHKHSNTLVNVLPPEAESSIMMLTSDQKPNVIYADIGSMDI 121

Query:   167 QKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 226
             QKQE+ EA+ELPLTH ELYKQIGIDPPRGVL+YGPPG GKTMLAK VA+H  AAFI VVG
Sbjct:   122 QKQEVWEAMELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKTVAHHMIAAFIHVVG 181

Query:   227 SEFVQKYLGE 236
             SEFV KYLGE
Sbjct:   182 SEFVHKYLGE 191


>GENEDB_PFALCIPARUM|PF10_0081 [details] [associations]
            symbol:PF10_0081 "26S proteasome regulatory
            subunit 4, putative" species:5833 "Plasmodium falciparum"
            [GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0006508
            "proteolysis" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
            ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
            PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
            KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
        Length = 448

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 94/201 (46%), Positives = 143/201 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKD-EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG 95
             +L  L+R  +++ ++EEY+ + EQ     +    + ++  ++  P+ +G   E++D+N+G
Sbjct:    70 KLLKLERIKDYLLLEEEYITNQEQIKSSDDKNYVKLKIDDLRGSPVSVGTLEELIDENHG 129

Query:    96 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD 155
             I+ ++ G  YYV ILS ++++LL+P  SV L+  +N++V +L  E D  +S++   + P 
Sbjct:   130 IIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVSVMKVEKAPL 189

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
              +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYGPPGTGKT+LAKAVAN
Sbjct:   190 ESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVAN 249

Query:   216 HTTAAFIRVVGSEFVQKYLGE 236
              T+A F+RVVGSE +QKYLG+
Sbjct:   250 ETSATFLRVVGSELIQKYLGD 270


>UNIPROTKB|Q8IJW0 [details] [associations]
            symbol:PF10_0081 "26S proteasome regulatory subunit 4,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
            ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
            PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
            KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
        Length = 448

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 94/201 (46%), Positives = 143/201 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKD-EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG 95
             +L  L+R  +++ ++EEY+ + EQ     +    + ++  ++  P+ +G   E++D+N+G
Sbjct:    70 KLLKLERIKDYLLLEEEYITNQEQIKSSDDKNYVKLKIDDLRGSPVSVGTLEELIDENHG 129

Query:    96 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD 155
             I+ ++ G  YYV ILS ++++LL+P  SV L+  +N++V +L  E D  +S++   + P 
Sbjct:   130 IIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVSVMKVEKAPL 189

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
              +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYGPPGTGKT+LAKAVAN
Sbjct:   190 ESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVAN 249

Query:   216 HTTAAFIRVVGSEFVQKYLGE 236
              T+A F+RVVGSE +QKYLG+
Sbjct:   250 ETSATFLRVVGSELIQKYLGD 270


>CGD|CAL0005257 [details] [associations]
            symbol:RPT2 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045732 "positive regulation
            of protein catabolic process" evidence=IEA] [GO:0043171 "peptide
            catabolic process" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005257 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000051 EMBL:AACQ01000050
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03062 RefSeq:XP_717718.1
            RefSeq:XP_717812.1 ProteinModelPortal:Q5A7M6 STRING:Q5A7M6
            GeneID:3640525 GeneID:3640683 KEGG:cal:CaO19.12895
            KEGG:cal:CaO19.5440 Uniprot:Q5A7M6
        Length = 465

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 98/211 (46%), Positives = 146/211 (69%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  + + ++EE+V +++     E  +A+E  +V  ++  P+ IG   E++D ++
Sbjct:    62 KLLKLERIKDHLLLEEEFVTNQEAFQPTEARQAEEREKVDELRGYPMAIGTLEEIIDDDH 121

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ST  S YYV I+S +++ LL+P  SV LH  + A+V VL  +AD  +S++   + P
Sbjct:   122 AIVSSTASSEYYVSIMSFVDKGLLEPGCSVLLHHKTVAVVGVLQDDADPMVSVMKLDKSP 181

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               +Y DIGG + Q QEI+E+VELPLTH ELY+++GI PP+GV+LYG PGTGKT+LAKAVA
Sbjct:   182 TESYADIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 241

Query:   215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             N T+A F+R+VGSE +QKYLG+     +QIF
Sbjct:   242 NQTSATFLRIVGSELIQKYLGDGPRLCRQIF 272


>POMBASE|SPBC4.07c [details] [associations]
            symbol:rpt2 "19S proteasome regulatory subunit Rpt2"
            species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=IC] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IGI] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC4.07c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0007346
            GO:GO:0043161 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0016887
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0008540 KO:K03062 OMA:FIRNQER EMBL:Z29366 PIR:S39348
            RefSeq:NP_595480.1 ProteinModelPortal:P36612 IntAct:P36612
            STRING:P36612 PRIDE:P36612 EnsemblFungi:SPBC4.07c.1 GeneID:2540939
            KEGG:spo:SPBC4.07c OrthoDB:EOG4FN7S6 NextBio:20802054
            Uniprot:P36612
        Length = 448

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 99/212 (46%), Positives = 149/212 (70%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSV---PLVIGQFMEMVDQN 93
             RL  +QR  + + ++EEYV+++++ LK +  R QEE  R+  +   P+ +G   E++D +
Sbjct:    68 RLLKMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDD 126

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
             + IV ST G  YYV I+S +++++L+P  SV LH  + ++V +L  + D  I+++   + 
Sbjct:   127 HAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKA 185

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P  +Y DIGG + Q QEI+EAVELPLTH ELY+++GI PP+GV+LYG PGTGKT+LAKAV
Sbjct:   186 PTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 245

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AN T+A F+RVVGSE +QKYLG+     +Q+F
Sbjct:   246 ANQTSATFLRVVGSELIQKYLGDGPRLVRQLF 277


>UNIPROTKB|F1NSP7 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
            EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
            Uniprot:F1NSP7
        Length = 439

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    60 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 119

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   120 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 179

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   180 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 239

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   240 NQTSATFLRVVGSELIQKYLGD 261


>UNIPROTKB|F1NTZ4 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
            IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
            Uniprot:F1NTZ4
        Length = 438

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    59 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 118

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   119 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 178

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   179 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 238

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   239 NQTSATFLRVVGSELIQKYLGD 260


>UNIPROTKB|Q90732 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
            IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
            ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
            KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
            NextBio:20815872 Uniprot:Q90732
        Length = 440

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAP 180

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   241 NQTSATFLRVVGSELIQKYLGD 262


>UNIPROTKB|A4FUZ3 [details] [associations]
            symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
            ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
            accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
            EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
            SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
            InParanoid:A4FUZ3 Uniprot:A4FUZ3
        Length = 440

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   241 NQTSATFLRVVGSELIQKYLGD 262


>UNIPROTKB|F1PQ40 [details] [associations]
            symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
            RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
            Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
            Uniprot:F1PQ40
        Length = 440

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   241 NQTSATFLRVVGSELIQKYLGD 262


>UNIPROTKB|P62191 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
            complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
            evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
            evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
            evidence=TAS] [GO:0000209 "protein polyubiquitination"
            evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
            evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
            [GO:0002474 "antigen processing and presentation of peptide antigen
            via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
            presentation of exogenous peptide antigen via MHC class I,
            TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
            Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
            Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
            Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
            GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
            OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
            EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
            PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
            ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
            MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
            PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
            Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
            GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
            HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
            InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
            ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
            Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
        Length = 440

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   241 NQTSATFLRVVGSELIQKYLGD 262


>UNIPROTKB|F2Z5J1 [details] [associations]
            symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
            RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
            SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
            KEGG:ssc:100155274 Uniprot:F2Z5J1
        Length = 440

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   241 NQTSATFLRVVGSELIQKYLGD 262


>MGI|MGI:106054 [details] [associations]
            symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
            ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
            "TBP-class protein binding" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
            OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
            RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
            SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
            REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
            Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
            InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
            GermOnline:ENSMUSG00000021178 Uniprot:P62192
        Length = 440

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   241 NQTSATFLRVVGSELIQKYLGD 262


>RGD|621097 [details] [associations]
            symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
            evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
            protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
            GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
            EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
            ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
            PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
            KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
            Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
        Length = 440

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/202 (45%), Positives = 145/202 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct:    61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
              IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct:   121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
               TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct:   181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T+A F+RVVGSE +QKYLG+
Sbjct:   241 NQTSATFLRVVGSELIQKYLGD 262


>SGD|S000002165 [details] [associations]
            symbol:RPT2 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
            evidence=IDA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IMP] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=IDA] [GO:0045732 "positive regulation of
            protein catabolic process" evidence=IDA] [GO:0043171 "peptide
            catabolic process" evidence=IMP] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000002165 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006938 GO:GO:0016887 GO:GO:0043171 GO:GO:0006511
            GO:GO:0045732 EMBL:Z48432 GO:GO:0070682 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T
            PDBsum:4B4T KO:K03062 OMA:FIRNQER GeneTree:ENSGT00550000074818
            OrthoDB:EOG4FN7S6 EMBL:X81070 EMBL:L17040 EMBL:Z74055 PIR:S46613
            RefSeq:NP_010277.1 ProteinModelPortal:P40327 SMR:P40327
            DIP:DIP-6282N IntAct:P40327 MINT:MINT-632695 STRING:P40327
            PaxDb:P40327 PeptideAtlas:P40327 PRIDE:P40327 EnsemblFungi:YDL007W
            GeneID:851557 KEGG:sce:YDL007W NextBio:968983 Genevestigator:P40327
            GermOnline:YDL007W Uniprot:P40327
        Length = 437

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 99/212 (46%), Positives = 149/212 (70%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSV---PLVIGQFMEMVDQN 93
             +L  ++R  + + ++EE+V + +  LK    + +EE K+++ +   PL IG   E++D +
Sbjct:    58 KLLRMERIKDHLLLEEEFVSNSEI-LKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDD 116

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
             + IV S T  +YYV ILS +++ELL+P  SV LH  + ++V VL  +AD  +S++   + 
Sbjct:   117 HAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKS 176

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P  +Y+DIGG + Q QEI+E+VELPLTH ELY+++GI PP+GV+LYG PGTGKT+LAKAV
Sbjct:   177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AN T+A F+R+VGSE +QKYLG+     +QIF
Sbjct:   237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIF 268


>TAIR|locus:2061639 [details] [associations]
            symbol:RPT2b "regulatory particle AAA-ATPase 2b"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0000502 "proteasome complex"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007292
            "female gamete generation" evidence=IGI] [GO:0010078 "maintenance
            of root meristem identity" evidence=IMP] [GO:0048232 "male gamete
            generation" evidence=IGI] [GO:0042023 "DNA endoreduplication"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051510 "regulation of unidimensional cell
            growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 EMBL:AC006081 GO:GO:0007292
            GO:GO:0010078 HSSP:P43773 GO:GO:0048232 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 UniGene:At.24596 KO:K03062
            ProtClustDB:CLSN2683303 EMBL:AF372977 EMBL:AY035072 EMBL:AY056335
            EMBL:AY087584 IPI:IPI00521093 PIR:E84585 RefSeq:NP_179604.1
            UniGene:At.13496 ProteinModelPortal:Q9SL67 SMR:Q9SL67 IntAct:Q9SL67
            STRING:Q9SL67 PaxDb:Q9SL67 PRIDE:Q9SL67 EnsemblPlants:AT2G20140.1
            GeneID:816533 KEGG:ath:AT2G20140 GeneFarm:1495 TAIR:At2g20140
            InParanoid:Q9SL67 OMA:FIRNQER PhylomeDB:Q9SL67 Uniprot:Q9SL67
        Length = 443

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 95/203 (46%), Positives = 144/203 (70%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 93
             RL  L+R  +++ ++EE+V ++++ LK +  +A+E+   V  ++  P+ +G   E++D+N
Sbjct:    64 RLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDEN 122

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
             + IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + 
Sbjct:   123 HAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKA 182

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P  +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct:   183 PLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 242

Query:   214 ANHTTAAFIRVVGSEFVQKYLGE 236
             AN T+A F+RVVGSE +QKYLG+
Sbjct:   243 ANSTSATFLRVVGSELIQKYLGD 265


>TAIR|locus:2119926 [details] [associations]
            symbol:RPT2a "regulatory particle AAA-ATPase 2A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
            [GO:0009933 "meristem structural organization" evidence=IMP]
            [GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0010015 "root
            morphogenesis" evidence=IMP] [GO:0010078 "maintenance of root
            meristem identity" evidence=IMP] [GO:0010311 "lateral root
            formation" evidence=IMP] [GO:0035266 "meristem growth"
            evidence=IMP] [GO:0048367 "shoot system development" evidence=IMP]
            [GO:0048827 "phyllome development" evidence=IMP] [GO:0048829 "root
            cap development" evidence=IMP] [GO:0046686 "response to cadmium
            ion" evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0009408 "response to heat" evidence=IMP] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=RCA;IMP] [GO:0043248 "proteasome assembly"
            evidence=RCA;IMP] [GO:0048364 "root development" evidence=IMP]
            [GO:0051788 "response to misfolded protein" evidence=RCA;IMP]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA;IMP]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0007292 "female gamete generation"
            evidence=IGI] [GO:0048232 "male gamete generation" evidence=IGI]
            [GO:0090351 "seedling development" evidence=IMP] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009651
            "response to salt stress" evidence=RCA] [GO:0009853
            "photorespiration" evidence=RCA] [GO:0042023 "DNA
            endoreduplication" evidence=RCA] [GO:0051510 "regulation of
            unidimensional cell growth" evidence=RCA] [GO:0060968 "regulation
            of gene silencing" evidence=IMP] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0046686 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0043161 GO:GO:0016020 EMBL:AL078470
            EMBL:AL161574 GO:GO:0009408 GO:GO:0010311 GO:GO:0048829
            GO:GO:0000502 GO:GO:0043248 GO:GO:0017111 GO:GO:0009965
            GO:GO:0009933 EMBL:AL078469 GO:GO:0007292 GO:GO:0060968
            GO:GO:0010078 HSSP:P43773 GO:GO:0051788 GO:GO:0090351 GO:GO:0048232
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123391 EMBL:AB161192 EMBL:AY034975 IPI:IPI00538666
            PIR:T08959 RefSeq:NP_194633.1 UniGene:At.24596
            ProteinModelPortal:Q9SZD4 SMR:Q9SZD4 IntAct:Q9SZD4 STRING:Q9SZD4
            PaxDb:Q9SZD4 PRIDE:Q9SZD4 EnsemblPlants:AT4G29040.1 GeneID:829025
            KEGG:ath:AT4G29040 GeneFarm:1494 TAIR:At4g29040 InParanoid:Q9SZD4
            KO:K03062 OMA:SAIVMEA PhylomeDB:Q9SZD4 ProtClustDB:CLSN2683303
            GO:GO:0035266 Uniprot:Q9SZD4
        Length = 443

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 95/203 (46%), Positives = 144/203 (70%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 93
             RL  L+R  +++ ++EE+V ++++ LK +  +A+E+   V  ++  P+ +G   E++D+N
Sbjct:    64 RLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDEN 122

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
             + IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + 
Sbjct:   123 HAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKA 182

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P  +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct:   183 PLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 242

Query:   214 ANHTTAAFIRVVGSEFVQKYLGE 236
             AN T+A F+RVVGSE +QKYLG+
Sbjct:   243 ANSTSATFLRVVGSELIQKYLGD 265


>FB|FBgn0015282 [details] [associations]
            symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
            species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
            evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
            evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
            [GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
            spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
            elongation" evidence=IMP] [GO:0008283 "cell proliferation"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
            GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
            eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
            OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
            RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
            SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
            STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
            GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
            InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
            BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
            Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
        Length = 439

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 92/203 (45%), Positives = 146/203 (71%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 93
             +L  L+R  +++ +++E+++++++ LK +  + +EE   V  ++  P+ +G   E++D N
Sbjct:    60 KLLKLERIKDYLMMEDEFIRNQER-LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDN 118

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
             + IV ++ GS +YV ILS ++++ L+P  SV L+   +A+V VL  + D  ++++   + 
Sbjct:   119 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKA 178

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAV
Sbjct:   179 PQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAV 238

Query:   214 ANHTTAAFIRVVGSEFVQKYLGE 236
             AN T+A F+RVVGSE +QKYLG+
Sbjct:   239 ANQTSATFLRVVGSELIQKYLGD 261


>ASPGD|ASPL0000049719 [details] [associations]
            symbol:AN2213 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0043171 "peptide catabolic process"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001307
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER
            OrthoDB:EOG4FN7S6 EMBL:AACD01000035 RefSeq:XP_659817.1
            ProteinModelPortal:Q5BB67 STRING:Q5BB67
            EnsemblFungi:CADANIAT00008897 GeneID:2875757 KEGG:ani:AN2213.2
            Uniprot:Q5BB67
        Length = 460

 Score = 457 (165.9 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 86/176 (48%), Positives = 126/176 (71%)

Query:    70 QEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRH 129
             +  V  ++  P+ +G   E++D ++ IV S TG  YYV I+S ++++LL+P AS+ LH  
Sbjct:   115 RSRVDDMRGSPMGVGNLEELIDDDHAIVSSATGPEYYVSIMSFVDKDLLEPGASILLHHK 174

Query:   130 SNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIG 189
             + ++V VL  E+D  +S++   + P  +Y DIGG + Q QE+RE+VELPL H ELY+++G
Sbjct:   175 TVSVVGVLTEESDPLVSVMKLDKAPTESYADIGGLESQIQEVRESVELPLLHPELYEEMG 234

Query:   190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             I PP+GV+LYG PGTGKT+LAKAVAN T+A F+R+VGSE +QKYLG+     +QIF
Sbjct:   235 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVRQIF 290

 Score = 45 (20.9 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query:    18 PSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKR 75
             PST S L + +         L+ +QR  + + ++EEYV++ ++ L++    A +   R
Sbjct:    47 PSTASKLPDIFPTSRCKLRYLR-MQRVHDHLLLEEEYVENMER-LRKAKASASDSANR 102


>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
            symbol:psmc1a "proteasome (prosome, macropain) 26S
            subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
            IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
            ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
            KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
            ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
        Length = 440

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 92/204 (45%), Positives = 146/204 (71%)

Query:    37 RLKSLQRQL--EFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ 92
             RLK L+++   +++ ++EE+++D++  K L+ +    + +V  ++  P+ +G   E++D 
Sbjct:    59 RLKLLKQERIKDYLLMEEEFIRDQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDD 118

Query:    93 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSE 152
             N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   +
Sbjct:   119 NHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEK 178

Query:   153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 212
              P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYG PGTGKT+LAKA
Sbjct:   179 APQETYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKA 238

Query:   213 VANHTTAAFIRVVGSEFVQKYLGE 236
             VAN T+A F+RVVGSE +QKYLG+
Sbjct:   239 VANQTSATFLRVVGSELIQKYLGD 262


>WB|WBGene00004502 [details] [associations]
            symbol:rpt-2 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
            binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
            RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
            IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
            PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
            GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
            WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
            NextBio:903424 Uniprot:O16368
        Length = 443

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 92/205 (44%), Positives = 145/205 (70%)

Query:    37 RLKSL--QRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVD 91
             RLK L  +R  +++ +++E+++++++ LK +  R +EE   V  ++  P+ +G   E++D
Sbjct:    62 RLKLLKSERIKDYLLMEQEFIQNQER-LKPQEERQEEERAKVDELRGTPMAVGSLEEIID 120

Query:    92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
               + IV +  GS +YV I+S +++E L+P  SV L+  ++A++ VL  + D  +S++   
Sbjct:   121 DQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLE 180

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             + P  TY D+GG D Q QEI+EAVELPLTH E Y+++GI PP+GV+LYG PGTGKT+LAK
Sbjct:   181 KAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAK 240

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             AVAN T+A F+R+VGSE +QKYLG+
Sbjct:   241 AVANQTSATFLRIVGSELIQKYLGD 265


>ZFIN|ZDB-GENE-040625-69 [details] [associations]
            symbol:psmc1b "proteasome (prosome, macropain) 26S
            subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
            IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
            Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
            InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
        Length = 440

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 102/243 (41%), Positives = 157/243 (64%)

Query:     9 DPKPVSEPPPSTRSDLTEQWSDEDDLYS-----------RLKSLQ--RQLEFIDIQEEYV 55
             D K   EPP  TR    ++ S   D  S           RLK L+  R  +++ ++EE++
Sbjct:    20 DKKKKYEPPIPTRVGKRKRKSKGPDAASKLPLVTPHTQCRLKLLKQDRIKDYLLMEEEFI 79

Query:    56 KDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTI 113
             ++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV ILS +
Sbjct:    80 RNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFV 139

Query:   114 NRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIRE 173
             +++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E
Sbjct:   140 DKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKE 199

Query:   174 AVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233
             +VELPLTH E Y+++GI PP+GV+LYG PGTGKT+LAKAVAN T+A F+RVVGSE +QKY
Sbjct:   200 SVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259

Query:   234 LGE 236
             LG+
Sbjct:   260 LGD 262


>UNIPROTKB|B4DR63 [details] [associations]
            symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
            regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0022624 "proteasome
            accessory complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
            EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
            IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
            Uniprot:B4DR63
        Length = 367

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 88/189 (46%), Positives = 137/189 (72%)

Query:    50 IQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYV 107
             ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+ IV ++ GS +YV
Sbjct:     1 MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYV 60

Query:   108 RILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQ 167
              ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q
Sbjct:    61 SILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQ 120

Query:   168 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227
              QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F+RVVGS
Sbjct:   121 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 180

Query:   228 EFVQKYLGE 236
             E +QKYLG+
Sbjct:   181 ELIQKYLGD 189


>DICTYBASE|DDB_G0270784 [details] [associations]
            symbol:psmC1 "TAT binding protein alpha"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030587 "sorocarp development"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0270784 GO:GO:0005524 GO:GO:0005634
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
            GO:GO:0030587 GO:GO:0000910 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 HSSP:Q9WZ49 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03062 OMA:FIRNQER RefSeq:XP_646726.1 ProteinModelPortal:Q55BV5
            STRING:Q55BV5 PRIDE:Q55BV5 EnsemblProtists:DDB0232964
            GeneID:8617698 KEGG:ddi:DDB_G0270784 ProtClustDB:PTZ00361
            Uniprot:Q55BV5
        Length = 439

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 91/205 (44%), Positives = 143/205 (69%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKR--ELLRAQEEVKRIQSV---PLVIGQFMEMVD 91
             +LK L+R  +++ +++E++++   N  +  E  + Q + K I+ +   PL +G   E++D
Sbjct:    58 QLK-LERIKDYLLMEQEFLQNYDLNQPKVDENSKEQADEKIIEELRGDPLTVGNLEEIID 116

Query:    92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
              N+ IV ST G  +YVRI+S +++  L   A+V L+  + ++V V+  E D  ++++   
Sbjct:   117 DNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVE 176

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             + P  +Y+DIGG + Q QE++EA+ELPLTH ELY++IGI PP+GV+LYG PGTGKT+LAK
Sbjct:   177 KAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAK 236

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             AVAN T+A F+RVVGSE +QKYLG+
Sbjct:   237 AVANQTSATFLRVVGSELIQKYLGD 261


>UNIPROTKB|Q58576 [details] [associations]
            symbol:pan "Proteasome-activating nucleotidase"
            species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
            "GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
            evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
            "proteasome-activating nucleotidase complex" evidence=IDA]
            [GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
            unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
            GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
            GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
            PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
            ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
            KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
            ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
            TIGRFAMs:TIGR01242 Uniprot:Q58576
        Length = 430

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 91/225 (40%), Positives = 144/225 (64%)

Query:    21 RSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVP 80
             ++DL ++   E    +R+  L+ ++  ++++++ ++ E   L +E    + E+ R++  P
Sbjct:    35 KNDLLKEELQEK---ARIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPP 91

Query:    81 LVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             L++G  ++ V +   +V S+TG ++ V +   +N + L P   V L++ +  +VDVLP  
Sbjct:    92 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPEN 151

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              D     +   E+P+V Y DIGG + Q QEIRE VELPL H EL++++GI+PP+G+LLYG
Sbjct:   152 KDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYG 211

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             PPGTGKT+LAKAVA  T A FIRVVGSE V+K++GE     K IF
Sbjct:   212 PPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIF 256


>FB|FBgn0039788 [details] [associations]
            symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
            species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
            GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
            GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
            UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
            STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
            KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
            InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
            NextBio:834976 Uniprot:Q9VA54
        Length = 399

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 87/195 (44%), Positives = 123/195 (63%)

Query:    42 QRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTT 101
             +RQ   + +Q +  ++E  NLK  LLR  EE++ +Q     I + ++ +D+N  +V    
Sbjct:    31 ERQKNLLRLQAQ--RNEL-NLKVRLLR--EELQLLQEQGSYIAEVVKPMDKNKVLVKVHP 85

Query:   102 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDI 161
                Y V +  TIN + + PS+ VAL   S  L  +LP + D  +SL+   + PD TY  +
Sbjct:    86 EGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPDSTYEMV 145

Query:   162 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 221
             GG D Q QEI+E +ELP+ H EL+  +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   F
Sbjct:   146 GGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAHHTECTF 205

Query:   222 IRVVGSEFVQKYLGE 236
             IRV GSE VQK++GE
Sbjct:   206 IRVSGSELVQKFIGE 220


>UNIPROTKB|J9NWB0 [details] [associations]
            symbol:J9NWB0 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074818 EMBL:AAEX03014432
            Ensembl:ENSCAFT00000039483 OMA:AGSELIQ Uniprot:J9NWB0
        Length = 436

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 81/205 (39%), Positives = 135/205 (65%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
             +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++   + +    E++D N+
Sbjct:    61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTSMSVVTLEEIIDGNH 120

Query:    95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS--QSE 152
              IV ++ GS +YV ILS ++++LL+P  S  L+   +A++ V   + D  ++++   + E
Sbjct:   121 VIVSTSVGSEHYVSILSFVDKDLLEPGCSNLLNHKLHAVIVVFMDDTDPLVTVMKVEKVE 180

Query:   153 K-PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             K P  TY DI G D Q QEI+E++ELPLTH E Y+++GI PP+GV+LYGPPGT      K
Sbjct:   181 KAPQETYADIRGLDNQIQEIKESLELPLTHPENYEEMGIKPPKGVILYGPPGT-----VK 235

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             AVAN T+A F+RV GSE +QKYLG+
Sbjct:   236 AVANRTSATFLRVAGSELIQKYLGD 260


>TAIR|locus:2147670 [details] [associations]
            symbol:RPT6A "regulatory particle triple-A ATPase 6A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AF296836
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123395 EMBL:AB044348 EMBL:AY065174 EMBL:BT009668
            IPI:IPI00542662 RefSeq:NP_568389.1 UniGene:At.10507
            ProteinModelPortal:Q9C5U3 SMR:Q9C5U3 IntAct:Q9C5U3 STRING:Q9C5U3
            PaxDb:Q9C5U3 PRIDE:Q9C5U3 EnsemblPlants:AT5G19990.1 GeneID:832121
            KEGG:ath:AT5G19990 TAIR:At5g19990 InParanoid:Q9C5U3 KO:K03066
            OMA:QNIKVIM PhylomeDB:Q9C5U3 ProtClustDB:CLSN2687185 Uniprot:Q9C5U3
        Length = 419

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 86/228 (37%), Positives = 129/228 (56%)

Query:    10 PKPVSEPPPSTRSDLTEQWSDEDDLY-SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLR 68
             P+   E   + +    +Q       Y   +  LQRQL         ++ ++  L   +  
Sbjct:    11 PETAMEETCNVKGAAAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRM 70

Query:    69 AQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHR 128
              +EE++ +Q     +G+ ++++ +N  +V       Y V I  +I+   + PS  VAL  
Sbjct:    71 LREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRN 130

Query:   129 HSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 188
              S  L  VLP + D  ++L+   + PD TY+ IGG D Q +EI+E +ELP+ H EL++ +
Sbjct:   131 DSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESL 190

Query:   189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQKY+GE
Sbjct:   191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 238


>WB|WBGene00004504 [details] [associations]
            symbol:rpt-4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 77/209 (36%), Positives = 132/209 (63%)

Query:    31 EDDLYSRLKSLQRQL-EFIDIQEEY--VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFM 87
             ED+    L S +R+L E  DI+++   ++ ++  + ++  +++ ++K +QSV  ++G+ +
Sbjct:    19 EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVL 78

Query:    88 EMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISL 147
             + + +   IV +T G  Y V    +IN+E LK    V+L   +  ++  LP E D  +  
Sbjct:    79 KQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYK 138

Query:   148 LSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT 207
             +S  +  +++Y+D+GG   Q +E+RE VELPL + EL+K++GI PP+G LL+GPPGTGKT
Sbjct:   139 MSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKT 198

Query:   208 MLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             +LA+AVA+     F++VV S  V KY+GE
Sbjct:   199 LLARAVASQLDCNFLKVVSSAIVDKYIGE 227


>UNIPROTKB|O17071 [details] [associations]
            symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
            species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 77/209 (36%), Positives = 132/209 (63%)

Query:    31 EDDLYSRLKSLQRQL-EFIDIQEEY--VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFM 87
             ED+    L S +R+L E  DI+++   ++ ++  + ++  +++ ++K +QSV  ++G+ +
Sbjct:    19 EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVL 78

Query:    88 EMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISL 147
             + + +   IV +T G  Y V    +IN+E LK    V+L   +  ++  LP E D  +  
Sbjct:    79 KQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYK 138

Query:   148 LSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT 207
             +S  +  +++Y+D+GG   Q +E+RE VELPL + EL+K++GI PP+G LL+GPPGTGKT
Sbjct:   139 MSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKT 198

Query:   208 MLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             +LA+AVA+     F++VV S  V KY+GE
Sbjct:   199 LLARAVASQLDCNFLKVVSSAIVDKYIGE 227


>TAIR|locus:2147685 [details] [associations]
            symbol:AT5G20000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;TAS]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
            GO:GO:0017111 EMBL:AF296836 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 ProtClustDB:CLSN2687185
            EMBL:AY039965 EMBL:AY079403 EMBL:AK226206 EMBL:AY087503
            IPI:IPI00530138 RefSeq:NP_197500.1 UniGene:At.51251
            ProteinModelPortal:Q94BQ2 SMR:Q94BQ2 IntAct:Q94BQ2 STRING:Q94BQ2
            PaxDb:Q94BQ2 PRIDE:Q94BQ2 EnsemblPlants:AT5G20000.1 GeneID:832122
            KEGG:ath:AT5G20000 GeneFarm:1515 TAIR:At5g20000 InParanoid:Q94BQ2
            OMA:TEILRIH PhylomeDB:Q94BQ2 Uniprot:Q94BQ2
        Length = 419

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 84/199 (42%), Positives = 124/199 (62%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIV 97
             L+ LQR+  + ++     +  + N +  +LR  EE++ +Q     +G+ ++++ +N  +V
Sbjct:    43 LQRLQREKSY-NLNRLEAQRNELNSRVRMLR--EELQLLQEPGSYVGEVVKVMGKNKVLV 99

Query:    98 GSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVT 157
                    Y V I  +I+   L PS  VAL   S  L  VLP + D  ++L+   + PD T
Sbjct:   100 KVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDST 159

Query:   158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217
             Y+ IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT
Sbjct:   160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219

Query:   218 TAAFIRVVGSEFVQKYLGE 236
                FIRV GSE VQKY+GE
Sbjct:   220 DCTFIRVSGSELVQKYIGE 238


>WB|WBGene00018991 [details] [associations]
            symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
            regulation of locomotion" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
            GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
            EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
            SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
            EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
            UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
            OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
        Length = 432

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 87/235 (37%), Positives = 132/235 (56%)

Query:     7 VLDPKPVSEPPPSTRSDLT-EQWSDEDDLYSRLKSLQRQLEFI----DIQEEYVKDEQKN 61
             ++ P PV    P++R   T +  SDE  L    K+   Q E       I    +  +QK 
Sbjct:    21 LMGPAPVF---PNSRKPATLDANSDEQTLRPYFKTKVEQAEQTVAEKSINVRRLMAQQKE 77

Query:    62 LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPS 121
             L  ++   +EE+  +      +G+  + +D+   +V +     Y V + ++++   L   
Sbjct:    78 LNGKVRLLKEEISHLHEQGSHVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAG 137

Query:   122 ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTH 181
               VAL   + A+ +VLP + D  +SL+   + PD TY  +GG D Q +EI+E +ELP+ H
Sbjct:   138 TRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKH 197

Query:   182 HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              EL+  +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   198 PELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 252


>WB|WBGene00004505 [details] [associations]
            symbol:rpt-5 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0005737 GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853
            GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:FO080337
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371
            SMR:O76371 IntAct:O76371 MINT:MINT-211164 STRING:O76371
            PaxDb:O76371 EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2
            GeneID:172238 KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238
            WormBase:F56H1.4 InParanoid:O76371 NextBio:874627 Uniprot:O76371
        Length = 430

 Score = 334 (122.6 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 58/141 (41%), Positives = 97/141 (68%)

Query:    96 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD 155
             ++ ++T + Y++ ++  ++ + LKP   V +++ S  +++ LP E DS +  +   E+P 
Sbjct:   114 VIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDERPT 173

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
               Y+DIGGCD Q QE+ EAV LP+TH + +  +GI PP+GVL+YGPPGTGKTM+A+AVA 
Sbjct:   174 EQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAA 233

Query:   216 HTTAAFIRVVGSEFVQKYLGE 236
              T + F+++ G + VQ ++G+
Sbjct:   234 QTKSTFLKLAGPQLVQMFIGD 254

 Score = 60 (26.2 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query:    32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
             +DL SR   L  ++  +  + + +      LK  +    E +K  +++P ++   +E++D
Sbjct:    32 EDLKSRTHLLDNEIRIMRSEVQRINHSATTLKERIKENTERIKVNKTLPYLVSNVVELLD 91


>UNIPROTKB|O76371 [details] [associations]
            symbol:rpt-5 "Protein RPT-5" species:6239 "Caenorhabditis
            elegans" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
            GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
            GeneTree:ENSGT00560000077230 EMBL:FO080337 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
            PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371 SMR:O76371
            IntAct:O76371 MINT:MINT-211164 STRING:O76371 PaxDb:O76371
            EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2 GeneID:172238
            KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238 WormBase:F56H1.4
            InParanoid:O76371 NextBio:874627 Uniprot:O76371
        Length = 430

 Score = 334 (122.6 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 58/141 (41%), Positives = 97/141 (68%)

Query:    96 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD 155
             ++ ++T + Y++ ++  ++ + LKP   V +++ S  +++ LP E DS +  +   E+P 
Sbjct:   114 VIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDERPT 173

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
               Y+DIGGCD Q QE+ EAV LP+TH + +  +GI PP+GVL+YGPPGTGKTM+A+AVA 
Sbjct:   174 EQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAA 233

Query:   216 HTTAAFIRVVGSEFVQKYLGE 236
              T + F+++ G + VQ ++G+
Sbjct:   234 QTKSTFLKLAGPQLVQMFIGD 254

 Score = 60 (26.2 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query:    32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
             +DL SR   L  ++  +  + + +      LK  +    E +K  +++P ++   +E++D
Sbjct:    32 EDLKSRTHLLDNEIRIMRSEVQRINHSATTLKERIKENTERIKVNKTLPYLVSNVVELLD 91


>UNIPROTKB|F1NCS8 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
            IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
            Uniprot:F1NCS8
        Length = 403

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 76/198 (38%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    28 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 86

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  DV+Y
Sbjct:    87 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVSY 146

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   147 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 206

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   207 CNFLKVVSSSIVDKYIGE 224


>UNIPROTKB|Q5ZKX2 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
            EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
            UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
            GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
            Uniprot:Q5ZKX2
        Length = 389

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 76/198 (38%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    14 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 72

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  DV+Y
Sbjct:    73 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVSY 132

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   133 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 192

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   193 CNFLKVVSSSIVDKYIGE 210


>TAIR|locus:2036099 [details] [associations]
            symbol:RPT5B "26S proteasome AAA-ATPase subunit RPT5B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005516 "calmodulin
            binding" evidence=ISS] [GO:0010255 "glucose mediated signaling
            pathway" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0009553 "embryo sac
            development" evidence=IGI] [GO:0009555 "pollen development"
            evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0006094 "gluconeogenesis" evidence=RCA] [GO:0006635 "fatty acid
            beta-oxidation" evidence=RCA] [GO:0007010 "cytoskeleton
            organization" evidence=RCA] [GO:0009407 "toxin catabolic process"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0080129 "proteasome core complex assembly"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0009555
            GO:GO:0000502 GO:GO:0017111 GO:GO:0009553 EMBL:AC000106
            GO:GO:0010498 GO:GO:0010255 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03065 HOGENOM:HOG000225143 ProtClustDB:CLSN2679225
            EMBL:EU980096 EMBL:AY050423 EMBL:AF412095 EMBL:AY124813
            IPI:IPI00549144 PIR:C86223 RefSeq:NP_172384.1 UniGene:At.10379
            UniGene:At.42241 ProteinModelPortal:O04019 SMR:O04019 IntAct:O04019
            STRING:O04019 PaxDb:O04019 PRIDE:O04019 EnsemblPlants:AT1G09100.1
            GeneID:837431 KEGG:ath:AT1G09100 GeneFarm:1498 TAIR:At1g09100
            InParanoid:O04019 OMA:VEILEMS PhylomeDB:O04019
            Genevestigator:O04019 Uniprot:O04019
        Length = 423

 Score = 330 (121.2 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 61/156 (39%), Positives = 101/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T    ++ ++  ++ + LKP   V +++ S  ++D LP E
Sbjct:    92 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSE 151

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH E ++++GI PP+GVLLYG
Sbjct:   152 YDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYG 211

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT++A+A A  T A F+++ G + VQ ++G+
Sbjct:   212 PPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD 247

 Score = 61 (26.5 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 12/73 (16%), Positives = 37/73 (50%)

Query:    32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
             DD+    + L  ++  +  + +    + +++K ++   QE++K  + +P ++G  +E+++
Sbjct:    22 DDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLVGNIVEILE 81

Query:    92 QNNGIVGSTTGSN 104
              +        G+N
Sbjct:    82 MSPEDDAEEDGAN 94


>POMBASE|SPBC23G7.12c [details] [associations]
            symbol:rpt6 "19S proteasome regulatory subunit Rpt6
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
            "nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
            cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
            GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
            OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
            ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
            EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
            OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
        Length = 403

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 77/176 (43%), Positives = 113/176 (64%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N +  LLR  EE++ +Q     +G+ ++ + +N  +V       Y V I   I+ + +KP
Sbjct:    49 NARVRLLR--EEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKP 106

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L+ +LP + D  +SL+   + PD TY  +GG + Q +EI+E +ELP+ 
Sbjct:   107 NIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVK 166

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+G+LLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQKY+GE
Sbjct:   167 HPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGE 222


>ZFIN|ZDB-GENE-030131-304 [details] [associations]
            symbol:psmc6 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
            EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
            EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
            UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
            GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
            Uniprot:Q6DRD2
        Length = 389

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 77/206 (37%), Positives = 126/206 (61%)

Query:    31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 90
             E  L    K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct:     6 EKGLQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query:    91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQ 150
              +   IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S 
Sbjct:    65 TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSH 124

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
              +   V+Y++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA
Sbjct:   125 EDPGSVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLA 184

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGE 236
             +AVA+     F++VV S  V KY+GE
Sbjct:   185 RAVASQLDCNFLKVVSSSIVDKYIGE 210


>UNIPROTKB|F1MLV1 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
            UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
            Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
        Length = 389

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    14 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 72

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    73 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 132

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   133 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 192

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   193 CNFLKVVSSSIVDKYIGE 210


>UNIPROTKB|Q2KIW6 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
            IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
            ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
            KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
            OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
        Length = 389

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    14 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 72

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    73 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 132

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   133 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 192

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   193 CNFLKVVSSSIVDKYIGE 210


>UNIPROTKB|J9P1N0 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
            Uniprot:J9P1N0
        Length = 395

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    20 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 78

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    79 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 138

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   139 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 198

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   199 CNFLKVVSSSIVDKYIGE 216


>UNIPROTKB|H0YJC0 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
            EMBL:AL133453 HGNC:HGNC:9553 Ensembl:ENST00000556813 Uniprot:H0YJC0
        Length = 262

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    14 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 72

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    73 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 132

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   133 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 192

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   193 CNFLKVVSSSIVDKYIGE 210


>UNIPROTKB|P62333 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
            activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IC]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
            EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
            EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
            PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
            ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
            MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
            REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
            PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
            KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
            H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
            neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
            PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
            CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
            Uniprot:P62333
        Length = 389

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    14 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 72

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    73 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 132

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   133 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 192

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   193 CNFLKVVSSSIVDKYIGE 210


>UNIPROTKB|F1SFE6 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
            TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
            Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
            ArrayExpress:F1SFE6 Uniprot:F1SFE6
        Length = 403

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    28 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 86

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    87 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 146

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   147 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 206

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   207 CNFLKVVSSSIVDKYIGE 224


>UNIPROTKB|P62335 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:43179 "Spermophilus tridecemlineatus" [GO:0022624
            "proteasome accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
            SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
        Length = 389

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    14 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 72

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    73 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 132

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   133 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 192

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   193 CNFLKVVSSSIVDKYIGE 210


>MGI|MGI:1914339 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
            EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
            IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
            ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
            PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
            REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
            Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
            InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
            GermOnline:ENSMUSG00000021832 Uniprot:P62334
        Length = 389

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    14 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 72

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    73 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 132

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   133 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 192

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   193 CNFLKVVSSSIVDKYIGE 210


>RGD|1308825 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
            "plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
            complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
            GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
            IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
            STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
            InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
            Uniprot:Q32PW9
        Length = 381

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:     6 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 64

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    65 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 124

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   125 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 184

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   185 CNFLKVVSSSIVDKYIGE 202


>RGD|2318218 [details] [associations]
            symbol:LOC100365869 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
            GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
            UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
            KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
        Length = 403

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 75/198 (37%), Positives = 125/198 (63%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVG 98
             K L    E ID + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ + +   IV 
Sbjct:    28 KKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 86

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +V+Y
Sbjct:    87 ATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSY 146

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             ++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+   
Sbjct:   147 SEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLD 206

Query:   219 AAFIRVVGSEFVQKYLGE 236
               F++VV S  V KY+GE
Sbjct:   207 CNFLKVVSSSIVDKYIGE 224


>WB|WBGene00004506 [details] [associations]
            symbol:rpt-6 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
            GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
            GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
            PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
            DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
            PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
            GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
            WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
            Uniprot:Q9XTT9
        Length = 416

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 88/227 (38%), Positives = 130/227 (57%)

Query:    14 SEPPPSTRSDLTEQWSDEDDL--YSRLKSLQRQLEFIDIQEEYVK-DEQKN-LKRELLRA 69
             ++P   T   LTE+ SDE  L  Y   K    Q +  D  +   +   Q+N L  ++   
Sbjct:    11 ADPSKPTAQKLTEE-SDEKTLRKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRML 69

Query:    70 QEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRH 129
             +EE++++      +G+  + +D+   +V       Y V +  +I+   L   A VAL   
Sbjct:    70 KEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRAD 129

Query:   130 SNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIG 189
             S AL  +LP + D  +SL+   + PD TY  +GG D Q +EI+E +ELP+ H EL+  +G
Sbjct:   130 SYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG 189

Query:   190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             I  P+GVLL+GPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   190 IAQPKGVLLFGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 236


>WB|WBGene00015688 [details] [associations]
            symbol:C10G11.8 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            GeneTree:ENSGT00550000074818 HSSP:Q9LCZ4 EMBL:FO080499 PIR:D87802
            RefSeq:NP_491811.1 ProteinModelPortal:P91025 SMR:P91025
            STRING:P91025 PaxDb:P91025 EnsemblMetazoa:C10G11.8 GeneID:172324
            KEGG:cel:CELE_C10G11.8 UCSC:C10G11.8 CTD:172324 WormBase:C10G11.8
            InParanoid:P91025 OMA:RGIENAN NextBio:875027 Uniprot:P91025
        Length = 438

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 86/221 (38%), Positives = 131/221 (59%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELL----RAQEEVKRIQSVPLVIGQFMEMVDQ 92
             RL  + R  +++ +++E++  +     R L     R Q+ V+ ++  P  + +  E+ D 
Sbjct:    49 RLLKMNRIHDYLQLEKEFITRQTSRHGRPLAVQKRREQQLVQSLRGTPTTLARVHELFDD 108

Query:    93 NNGIVGSTTGSN--YYVRILSTINRELLKPSASVALHRHS------NALVDVLPPEADSS 144
                 V    GS   +YV ILS ++++LL+ +A V +          +A+V VL  + DS+
Sbjct:   109 EKHAVVVVEGSRREWYVPILSIVDKDLLRLNALVMVKAGGMFKTVPSAIVGVLDDKIDSN 168

Query:   145 ISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGT 204
                    + P  T++DIGGC+ Q QE++E+VELPLTH E Y+++GI  P+GV+LYG PGT
Sbjct:   169 AMGHKVEKTPKETFDDIGGCESQIQELKESVELPLTHPEYYEEMGITAPKGVILYGEPGT 228

Query:   205 GKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             GKT+LAKAVAN T+A FIR  GS+ VQK  GE     +QIF
Sbjct:   229 GKTLLAKAVANSTSATFIRATGSDLVQKQSGEGARLVRQIF 269


>UNIPROTKB|F1PBK7 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
            Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
        Length = 439

 Score = 331 (121.6 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:   108 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 167

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   168 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 227

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   228 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 263

 Score = 53 (23.7 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 10/60 (16%), Positives = 33/60 (55%)

Query:    32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
             +++  R + L  +++ +  +   V  E + +K ++    E++K  +++P ++   +E++D
Sbjct:    39 EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 98

 Score = 46 (21.3 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query:    12 PVSEPPPSTRSDLTEQWSD-EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQ 70
             P  E P + +  +   W + E D     + L+   E I  +   +  E K +K E+LR  
Sbjct:     5 PKREDPVTRQEKMATVWDEAEQDGIGE-EVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVT 63

Query:    71 EEVKRIQ 77
              E++ ++
Sbjct:    64 HELQAMK 70


>GENEDB_PFALCIPARUM|PFL2345c [details] [associations]
            symbol:PFL2345c "tat-binding protein homolog"
            species:5833 "Plasmodium falciparum" [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0003712 "transcription cofactor activity" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014188
            GO:GO:0006511 HSSP:Q01853 GO:GO:0017111 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM ProtClustDB:CLSZ2429412
            RefSeq:XP_001350873.1 ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5
            MINT:MINT-1544609 PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA
            GeneID:811521 KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900
            Uniprot:Q8I4U5
        Length = 435

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 75/188 (39%), Positives = 113/188 (60%)

Query:    50 IQEEYVKDEQKN-LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVR 108
             +Q +   + Q+N L   +    +E++ +      +G+ ++ + +N  +V       Y V 
Sbjct:    69 LQNKKRLEAQRNELNARVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKINPEGKYVVD 128

Query:   109 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 168
             I   IN     P+  VAL+  S  L  +LP + D  +SL+   + PD TY  +GG D Q 
Sbjct:   129 IARHINISHCTPNTRVALYNDSYKLHKILPSKVDPLVSLMKVEKVPDSTYEMVGGLDQQV 188

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228
             +E++E +ELP+ H E+++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE
Sbjct:   189 KEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 248

Query:   229 FVQKYLGE 236
              VQKY+GE
Sbjct:   249 LVQKYIGE 256


>UNIPROTKB|Q8I4U5 [details] [associations]
            symbol:PFL2345c "Tat-binding protein homolog" species:36329
            "Plasmodium falciparum 3D7" [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:AE014188 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            ProtClustDB:CLSZ2429412 RefSeq:XP_001350873.1
            ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5 MINT:MINT-1544609
            PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA GeneID:811521
            KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900 Uniprot:Q8I4U5
        Length = 435

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 75/188 (39%), Positives = 113/188 (60%)

Query:    50 IQEEYVKDEQKN-LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVR 108
             +Q +   + Q+N L   +    +E++ +      +G+ ++ + +N  +V       Y V 
Sbjct:    69 LQNKKRLEAQRNELNARVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKINPEGKYVVD 128

Query:   109 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 168
             I   IN     P+  VAL+  S  L  +LP + D  +SL+   + PD TY  +GG D Q 
Sbjct:   129 IARHINISHCTPNTRVALYNDSYKLHKILPSKVDPLVSLMKVEKVPDSTYEMVGGLDQQV 188

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228
             +E++E +ELP+ H E+++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE
Sbjct:   189 KEVKEVIELPVKHPEIFESLGISQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 248

Query:   229 FVQKYLGE 236
              VQKY+GE
Sbjct:   249 LVQKYIGE 256


>ASPGD|ASPL0000032311 [details] [associations]
            symbol:AN5747 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:0045899 "positive
            regulation of RNA polymerase II transcriptional preinitiation
            complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
        Length = 393

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 73/177 (41%), Positives = 115/177 (64%)

Query:    60 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK 119
             K+L+RE   ++E +K +QSV  +IG+ ++ +D+   IV +++G  Y V   S ++R  LK
Sbjct:    38 KDLQREFDISEENIKALQSVGQIIGEVLKQLDEERFIVKASSGPRYVVGCRSKVDRSKLK 97

Query:   120 PSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPL 179
                 VAL   +  ++ +LP E D  +  +S  +   + +  IGG + Q +E+RE +ELPL
Sbjct:    98 QGTRVALDMTTLTIMRMLPREVDPLVYNMSLEDPGQINFAGIGGLNDQIRELREVIELPL 157

Query:   180 THHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              + EL++++GI PP+GVLLYGPPGTGKT+LA+AVA+     F++VV S  V KY+GE
Sbjct:   158 KNPELFQRVGIKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGE 214


>CGD|CAL0006022 [details] [associations]
            symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
            storage granule" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IEA] [GO:0032968 "positive regulation of
            transcription elongation from RNA polymerase II promoter"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0051091 "positive regulation
            of sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0043433 "negative regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
            RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
            GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
        Length = 401

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 74/181 (40%), Positives = 115/181 (63%)

Query:    57 DEQKN-LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 115
             + Q+N L  ++ + ++E+K +Q     +G+ ++++     +V       + V +   I+ 
Sbjct:    41 EAQRNKLNNKVRQLKDELKLLQEPGSYVGEVVKVMGLKKVLVKIHPEGKFIVNVTKDIDV 100

Query:   116 ELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAV 175
             + L PS  V L   S+ L  +LP + D  +SL+   + PD TY+ +GG D Q +EI+E +
Sbjct:   101 KKLTPSIRVCLKPDSHDLYKILPTKVDPLVSLMMVEKVPDSTYDMVGGLDKQIKEIKEVI 160

Query:   176 ELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 235
             ELP+ H EL++ +GI  P+GV+LYGPPGTGKT+LA+AVA+HT   FIRV GSE VQKY+G
Sbjct:   161 ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTECKFIRVSGSELVQKYIG 220

Query:   236 E 236
             E
Sbjct:   221 E 221


>FB|FBgn0036224 [details] [associations]
            symbol:Rpt4R "Regulatory particle triple-A ATPase 4-related"
            species:7227 "Drosophila melanogaster" [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014296
            GO:GO:0006200 GO:GO:0006974 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 EMBL:AY089267 RefSeq:NP_648525.1
            UniGene:Dm.5141 SMR:Q9VTQ9 IntAct:Q9VTQ9 MINT:MINT-869141
            STRING:Q9VTQ9 EnsemblMetazoa:FBtr0076040 GeneID:39351
            KEGG:dme:Dmel_CG7257 UCSC:CG7257-RA CTD:39351 FlyBase:FBgn0036224
            InParanoid:Q9VTQ9 OMA:CAIWTEA OrthoDB:EOG4VT4CM GenomeRNAi:39351
            NextBio:813228 Uniprot:Q9VTQ9
        Length = 398

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 74/210 (35%), Positives = 130/210 (61%)

Query:    29 SDEDDLYSRLKSLQRQLEFIDIQEEY--VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQF 86
             +D++ + +      + LE  +I+ +   ++D+ K +  E  ++++++K +QSV  ++G+ 
Sbjct:    10 TDDERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYEKSEDDLKALQSVGQMVGEI 69

Query:    87 MEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS 146
             ++ +  +N IV ++ G  Y V     IN+E LKP   VAL   +  ++  LP E D  + 
Sbjct:    70 LKQLTPDNFIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLPREVDPLVY 129

Query:   147 LLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 206
              ++  +  +V Y +IGG   Q +E+RE +ELPL + +++ ++GI PP+G LLYGPPGTGK
Sbjct:   130 NMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGK 189

Query:   207 TMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             T+LA+A+A+   A F++VV S  V KY+GE
Sbjct:   190 TLLARAIASQMDANFLKVVSSAIVDKYIGE 219


>UNIPROTKB|Q9FXT8 [details] [associations]
            symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
            sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
            GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
            EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
            OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
            EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
            STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
            KEGG:osa:4328642 Uniprot:Q9FXT8
        Length = 400

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 68/182 (37%), Positives = 117/182 (64%)

Query:    55 VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTIN 114
             V++  KN K++  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S ++
Sbjct:    36 VRENLKNAKKDFTKTEDDLKSLQSVGQIIGEVLRPLDNERFIVKASSGPRYVVGCRSKVD 95

Query:   115 RELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREA 174
             +E L     V L   +  ++  LP E D  +  +   +  +V+Y+ +GG   Q +E+RE+
Sbjct:    96 KEKLTSGTRVVLDMTTLTIMRTLPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRES 155

Query:   175 VELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 234
             +ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A++  A F+++V S  + KY+
Sbjct:   156 IELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYI 215

Query:   235 GE 236
             GE
Sbjct:   216 GE 217


>TAIR|locus:2024822 [details] [associations]
            symbol:RPT1A "regulatory particle triple-A 1A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 EMBL:AC009324 EMBL:AC024260
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123390 EMBL:AY062860 EMBL:BT000069 IPI:IPI00548766
            PIR:G96577 RefSeq:NP_175778.1 UniGene:At.66918
            ProteinModelPortal:Q9SSB5 SMR:Q9SSB5 IntAct:Q9SSB5 STRING:Q9SSB5
            PaxDb:Q9SSB5 PRIDE:Q9SSB5 EnsemblPlants:AT1G53750.1 GeneID:841812
            KEGG:ath:AT1G53750 GeneFarm:2748 TAIR:At1g53750 InParanoid:Q9SSB5
            KO:K03061 OMA:DIRWELI PhylomeDB:Q9SSB5 ProtClustDB:CLSN2682130
            Genevestigator:Q9SSB5 GermOnline:AT1G53750 Uniprot:Q9SSB5
        Length = 426

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 66/113 (58%), Positives = 88/113 (77%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E
Sbjct:   133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              + ++GIDPP+GVL YGPPGTGKT+LA+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE 245


>MGI|MGI:1098754 [details] [associations]
            symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
            ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
            cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
            GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
            GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
            CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
            EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
            UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
            IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
            PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
            NextBio:295874 Bgee:O88685 Genevestigator:O88685
            GermOnline:ENSMUSG00000002102 Uniprot:O88685
        Length = 442

 Score = 331 (121.6 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:   111 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 170

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   171 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 230

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   231 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 266

 Score = 48 (22.0 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query:    12 PVSEPPPSTRSDLTEQWSD-EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQ 70
             P  E P + +  +   W + E D     + L+   E I  +   +  E K +K E+LR  
Sbjct:     8 PTPESPVTRQEKMATVWDEAEQDGIGE-EVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVT 66

Query:    71 EEVKRIQ 77
              E++ ++
Sbjct:    67 HELQAMK 73


>RGD|61905 [details] [associations]
            symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
           3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
           processing body" evidence=ISS] [GO:0001824 "blastocyst development"
           evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
           [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
           evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
           [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
           [GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
           [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
           "perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
           InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
           Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
           GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
           GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
           KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
           IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
           ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
           PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
           UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
           Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
        Length = 439

 Score = 331 (121.6 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:   108 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 167

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   168 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 227

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   228 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 263

 Score = 48 (22.0 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query:    12 PVSEPPPSTRSDLTEQWSD-EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQ 70
             P  E P + +  +   W + E D     + L+   E I  +   +  E K +K E+LR  
Sbjct:     5 PTPESPVTRQEKMATVWDEAEQDGIGE-EVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVT 63

Query:    71 EEVKRIQ 77
              E++ ++
Sbjct:    64 HELQAMK 70


>UNIPROTKB|Q6P6U2 [details] [associations]
            symbol:Psmc3 "26S protease regulatory subunit 6A"
            species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
            IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
            Genevestigator:Q6P6U2 Uniprot:Q6P6U2
        Length = 442

 Score = 331 (121.6 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:   111 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 170

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   171 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 230

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   231 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 266

 Score = 48 (22.0 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query:    12 PVSEPPPSTRSDLTEQWSD-EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQ 70
             P  E P + +  +   W + E D     + L+   E I  +   +  E K +K E+LR  
Sbjct:     8 PTPESPVTRQEKMATVWDEAEQDGIGE-EVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVT 66

Query:    71 EEVKRIQ 77
              E++ ++
Sbjct:    67 HELQAMK 73


>UNIPROTKB|Q4RG45 [details] [associations]
            symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
            genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
            [GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008134 "transcription factor binding" evidence=ISS]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
            GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
            ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
        Length = 406

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 77/176 (43%), Positives = 110/176 (62%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ + ++D+   +V       + V +   I+   + P
Sbjct:    53 NAKVRLLR--EELQLLQEQGSYVGEVVRVMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 110

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   111 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 170

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   171 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 226


>DICTYBASE|DDB_G0292382 [details] [associations]
            symbol:psmC5 "HIV TAT binding-protein-related"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0005838 "proteasome regulatory particle"
            evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
            GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
            ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
            GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
            ProtClustDB:CLSZ2429412 Uniprot:P34124
        Length = 403

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 75/181 (41%), Positives = 113/181 (62%)

Query:    57 DEQKN-LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 115
             + Q+N L   +   +EE++ + +    + + ++++ +N  +V       + V I  T++ 
Sbjct:    42 EAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDI 101

Query:   116 ELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAV 175
               L PS   AL   S  L  +LP + D  +SL+   + PD TY+ +GG D Q +EI+E +
Sbjct:   102 AKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVI 161

Query:   176 ELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 235
             ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQKY+G
Sbjct:   162 ELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIG 221

Query:   236 E 236
             E
Sbjct:   222 E 222


>UNIPROTKB|Q6P380 [details] [associations]
            symbol:psmc5 "Putative uncharacterized protein MGC75584"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000502
            "proteasome complex" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008134
            "transcription factor binding" evidence=ISS] [GO:0031531
            "thyrotropin-releasing hormone receptor binding" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0043161 GO:GO:0000502 GO:GO:0017111 GO:GO:0008134
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            HOGENOM:HOG000225143 KO:K03066 CTD:5705 OrthoDB:EOG4MKNGF
            GO:GO:0031531 EMBL:BC064153 RefSeq:NP_989358.1 UniGene:Str.3783
            ProteinModelPortal:Q6P380 STRING:Q6P380 GeneID:394988
            KEGG:xtr:394988 Xenbase:XB-GENE-999928 InParanoid:Q6P380
            Uniprot:Q6P380
        Length = 414

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 78/176 (44%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V I   I+   + P
Sbjct:    61 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDIDKNIDINDVTP 118

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   119 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 178

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   179 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 234


>UNIPROTKB|F1SID4 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
            Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
        Length = 446

 Score = 331 (121.6 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:   115 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 174

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   175 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 234

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   235 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 270

 Score = 45 (20.9 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query:    12 PVSEPPPSTRSDLTEQWSD-EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQ 70
             P  E P + +  +   W + E D     + L+   E I  +   +  E K +K E+LR  
Sbjct:    12 PQLESPVTRQEKMATVWDEAEQDGIGE-EVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVT 70

Query:    71 EEVKRIQ 77
              E++ ++
Sbjct:    71 HELQAMK 77


>UNIPROTKB|F1NU79 [details] [associations]
            symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
            GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
            Ensembl:ENSGALT00000000469 Uniprot:F1NU79
        Length = 412

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    59 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 116

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   117 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 176

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   177 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 232


>UNIPROTKB|P62194 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
            hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
            factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
            UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
            PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
            KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
            InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
            ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
        Length = 406

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    53 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 110

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   111 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 170

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   171 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 226


>UNIPROTKB|J3KRP2 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005102 "receptor binding" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0031595 "nuclear proteasome complex"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR003959 Pfam:PF00004
            GO:GO:0005524 EMBL:AC015651 ChiTaRS:PSMC5 HGNC:HGNC:9552
            Ensembl:ENST00000584320 Uniprot:J3KRP2
        Length = 241

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    45 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 102

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   103 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 162

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   163 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 218


>UNIPROTKB|J3QSA9 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005102 "receptor binding" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0031595 "nuclear proteasome complex"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
            EMBL:AC015651 ChiTaRS:PSMC5 HGNC:HGNC:9552 Ensembl:ENST00000585123
            Uniprot:J3QSA9
        Length = 257

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    45 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 102

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   103 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 162

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   163 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 218


>UNIPROTKB|P62195 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
            "nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IDA] [GO:0000502 "proteasome complex"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=IPI] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043069 "negative regulation of programmed cell
            death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
            evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
            [GO:0003712 "transcription cofactor activity" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0006521 "regulation of cellular amino acid
            metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031145 "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
            GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
            GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
            GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
            EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
            OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
            EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
            IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
            RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
            PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
            MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
            PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
            Ensembl:ENST00000375812 Ensembl:ENST00000580864
            Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
            GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
            neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
            PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
            NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
            Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
        Length = 406

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    53 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 110

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   111 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 170

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   171 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 226


>UNIPROTKB|P62197 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0008134 "transcription factor binding"
            evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
            EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
            ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
            Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
            Uniprot:P62197
        Length = 406

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    53 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 110

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   111 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 170

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   171 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 226


>UNIPROTKB|Q6AZU7 [details] [associations]
            symbol:Q6AZU7 "Putative uncharacterized protein"
            species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
            binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISS] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
            GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
            ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
        Length = 414

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    61 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 118

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   119 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 178

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   179 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 234


>MGI|MGI:105047 [details] [associations]
            symbol:Psmc5 "protease (prosome, macropain) 26S subunit,
            ATPase 5" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005675 "holo TFIIH complex" evidence=ISA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=ISO;ISA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
            evidence=ISO] [GO:0031531 "thyrotropin-releasing hormone receptor
            binding" evidence=ISO] [GO:0031595 "nuclear proteasome complex"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:105047
            GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043161
            GO:GO:0031410 GO:GO:0017111 GO:GO:0008134 GO:GO:0005675
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03066 OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947
            OrthoDB:EOG4MKNGF GO:GO:0031531 EMBL:Z54219 EMBL:AK010505
            EMBL:AK135451 EMBL:AK145703 IPI:IPI00135640 PIR:S61923
            RefSeq:NP_032976.1 UniGene:Mm.272361 ProteinModelPortal:P62196
            SMR:P62196 IntAct:P62196 STRING:P62196 PhosphoSite:P62196
            REPRODUCTION-2DPAGE:IPI00135640 REPRODUCTION-2DPAGE:P62196
            PaxDb:P62196 PRIDE:P62196 Ensembl:ENSMUST00000021049 GeneID:19184
            KEGG:mmu:19184 InParanoid:P62196 NextBio:295882 Bgee:P62196
            Genevestigator:P62196 GermOnline:ENSMUSG00000020708 Uniprot:P62196
        Length = 406

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    53 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 110

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   111 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 170

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   171 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 226


>RGD|708376 [details] [associations]
            symbol:Psmc5 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 5" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO;ISS] [GO:0005102 "receptor
            binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
            evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0008134 "transcription factor binding" evidence=ISO;ISS]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0017025 "TBP-class
            protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISO;ISS] [GO:0031410 "cytoplasmic vesicle"
            evidence=IEA;ISO] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISO;ISS] [GO:0031595 "nuclear proteasome
            complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=ISO;ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:708376 GO:GO:0005524
            GO:GO:0005737 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
            GO:GO:0016887 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066
            OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF
            GO:GO:0031531 EMBL:D83521 EMBL:AB000491 EMBL:AB000493 EMBL:BC058462
            IPI:IPI00213587 PIR:T43799 RefSeq:NP_112411.1 UniGene:Rn.10972
            ProteinModelPortal:P62198 SMR:P62198 IntAct:P62198 STRING:P62198
            PhosphoSite:P62198 World-2DPAGE:0004:P62198 PRIDE:P62198
            Ensembl:ENSRNOT00000013997 GeneID:81827 KEGG:rno:81827
            UCSC:RGD:708376 InParanoid:P62198 NextBio:615767
            ArrayExpress:P62198 Genevestigator:P62198
            GermOnline:ENSRNOG00000010038 GO:GO:0031595 Uniprot:P62198
        Length = 406

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    53 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 110

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   111 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 170

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   171 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 226


>ZFIN|ZDB-GENE-030131-6547 [details] [associations]
            symbol:psmc5 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 5" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0031531
            "thyrotropin-releasing hormone receptor binding" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=IEA;ISS] [GO:0008134
            "transcription factor binding" evidence=ISS] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-6547 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM CTD:5705
            GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
            EMBL:CU459020 EMBL:BC078375 IPI:IPI00482097 RefSeq:NP_001003740.1
            UniGene:Dr.75934 STRING:Q6AZC1 Ensembl:ENSDART00000106191
            GeneID:445285 KEGG:dre:445285 InParanoid:Q6AZC1 NextBio:20832032
            Uniprot:Q6AZC1
        Length = 406

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 77/176 (43%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    53 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 110

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   111 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 170

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   171 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 226


>UNIPROTKB|P17980 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
            "blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
            region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=ISS] [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=TAS] [GO:0003714 "transcription corepressor
            activity" evidence=TAS] [GO:0000502 "proteasome complex"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0006521 "regulation of cellular amino acid
            metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031145 "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
            Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
            Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
            GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
            EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
            GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
            GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
            EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
            EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
            IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
            ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
            MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
            REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
            PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
            KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
            HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
            PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
            PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
            PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
            Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
        Length = 439

 Score = 331 (121.6 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:   108 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 167

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   168 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 227

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   228 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 263

 Score = 44 (20.5 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query:    12 PVSEPPPSTRSDLTEQWSD-EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQ 70
             P  E P + +  +   W + E D     + L+   E I  +   +  E K +K E+LR  
Sbjct:     5 PNIESPVTRQEKMATVWDEAEQDGIGE-EVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVT 63

Query:    71 EEVKRIQ 77
              E++ ++
Sbjct:    64 HELQAMK 70


>CGD|CAL0005689 [details] [associations]
            symbol:RPT1 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005689 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000078 EMBL:AACQ01000077
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
            RefSeq:XP_715876.1 RefSeq:XP_715926.1 ProteinModelPortal:Q5A2A0
            STRING:Q5A2A0 GeneID:3642412 GeneID:3642461 KEGG:cal:CaO19.441
            KEGG:cal:CaO19.8071 Uniprot:Q5A2A0
        Length = 444

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 74/155 (47%), Positives = 99/155 (63%)

Query:    92 QNNGIVGSTTGSNYYVRILSTIN-----RELLKPS-----ASVALHRHSNALVDVLPPEA 141
             Q  G+  + T S Y + I           E L P+       V + RH   +   LPP  
Sbjct:   109 QPTGLQNADTKSKYVINIKQIAKFVVGLGERLSPTDIEEGMRVGVDRHKYEIQLPLPPRI 168

Query:   142 DSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGP 201
             D S+++++  EKPDVTY+D+GGC  Q +++RE VELPL   E + ++GIDPP+G+LLYGP
Sbjct:   169 DPSVTMMTVEEKPDVTYSDVGGCKEQIEKLREVVELPLLSPERFVKLGIDPPKGILLYGP 228

Query:   202 PGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   229 PGTGKTLCARAVANRTDATFIRVIGSELVQKYVGE 263


>DICTYBASE|DDB_G0276917 [details] [associations]
            symbol:psmC2 "26S proteasome ATPase 2 subunit"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0000502
            "proteasome complex" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0276917 GO:GO:0005524 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0000502 GO:GO:0006511
            HSSP:Q9WZ49 EMBL:AAFI02000019 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03061 RefSeq:XP_642830.1 ProteinModelPortal:Q86JA1
            STRING:Q86JA1 PRIDE:Q86JA1 EnsemblProtists:DDB0232966
            GeneID:8620693 KEGG:ddi:DDB_G0276917 OMA:HIFTIHA
            ProtClustDB:CLSZ2429177 Uniprot:Q86JA1
        Length = 428

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 63/113 (55%), Positives = 87/113 (76%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D+S++++   EKPD+TY D+GGC  Q +++RE VE+PL H E
Sbjct:   135 VGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPE 194

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GIDPP+GVL+YGPPGTGKT+ A+AVAN T AAF+RV+GSE VQKY+GE
Sbjct:   195 KFVNLGIDPPKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGE 247


>FB|FBgn0028685 [details] [associations]
            symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
            complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:1901838 "positive regulation of transcription of nuclear large
            rRNA transcript from RNA polymerase I promoter" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
            regulatory region sequence-specific DNA binding" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
            GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
            TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
            ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
            PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
            OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
            Uniprot:Q8SZ19
        Length = 397

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 72/181 (39%), Positives = 115/181 (63%)

Query:    56 KDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 115
             ++E K+L +   +++ ++K +QSV  ++G+ ++ + ++  IV +T G  Y V     +++
Sbjct:    38 REEIKDLTKLYDKSENDLKALQSVGQIVGEVLKQLTEDKFIVKATNGPRYVVGCRRQLDK 97

Query:   116 ELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAV 175
               LK    VAL   +  ++  LP E D  +  +S  +  DVTY+ IGG   Q +E+RE +
Sbjct:    98 AKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVTYSAIGGLTDQIRELREVI 157

Query:   176 ELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 235
             ELPL + EL+ ++GI PP+G LLYGPPGTGKT+LA+AVA+   A F++VV S  V KY+G
Sbjct:   158 ELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIG 217

Query:   236 E 236
             E
Sbjct:   218 E 218


>SGD|S000003016 [details] [associations]
            symbol:RPT6 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0034515
            "proteasome storage granule" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
            "chromatin remodeling" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IMP] [GO:0045899 "positive
            regulation of RNA polymerase II transcriptional preinitiation
            complex assembly" evidence=IGI;IMP] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0019904 "protein domain specific binding"
            evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IPI] [GO:0006289 "nucleotide-excision
            repair" evidence=IGI] [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IMP] [GO:0043433 "negative regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IMP]
            [GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003016
            GO:GO:0005524 GO:GO:0005634 GO:GO:0019904 GO:GO:0051091
            GO:GO:0043161 EMBL:BK006941 GO:GO:0016887 GO:GO:0006338
            GO:GO:0043433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0034515
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03066
            OMA:TEILRIH GeneTree:ENSGT00550000074947 OrthoDB:EOG44N21J
            EMBL:X66400 EMBL:L01626 EMBL:Z72570 EMBL:AY693135 PIR:S64052
            RefSeq:NP_011467.1 ProteinModelPortal:Q01939 SMR:Q01939
            DIP:DIP-979N IntAct:Q01939 MINT:MINT-568023 STRING:Q01939
            PaxDb:Q01939 PeptideAtlas:Q01939 EnsemblFungi:YGL048C GeneID:852834
            KEGG:sce:YGL048C NextBio:972403 Genevestigator:Q01939
            GermOnline:YGL048C Uniprot:Q01939
        Length = 405

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 81/205 (39%), Positives = 123/205 (60%)

Query:    35 YSRLKSLQRQLEFIDIQEEYVK--DEQKNLKRELLR-AQEEVKRIQSVPLVIGQFMEMVD 91
             Y   K  + +L+ I  + E V+  + Q+N   + +R  ++E++ +Q     +G+ +++V 
Sbjct:    22 YFEQKIQETELK-IRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVS 80

Query:    92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
                 +V       Y V +   IN + LK S  V L   S  L  VL  +AD  +SL+   
Sbjct:    81 DKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVE 140

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             + PD TY+ +GG   Q +EI+E +ELP+ H EL++ +GI  P+GV+LYGPPGTGKT+LA+
Sbjct:   141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             AVA+HT   FIRV G+E VQKY+GE
Sbjct:   201 AVAHHTDCKFIRVSGAELVQKYIGE 225


>FB|FBgn0020369 [details] [associations]
            symbol:Rpt6 "Regulatory particle triple-A ATPase 6"
            species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004175
            "endopeptidase activity" evidence=IDA;NAS] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0005838
            "proteasome regulatory particle" evidence=ISS;IDA;NAS] [GO:0000502
            "proteasome complex" evidence=NAS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=NAS] [GO:0006508 "proteolysis"
            evidence=ISS;IDA;NAS] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005875
            "microtubule associated complex" evidence=IDA] [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005875 EMBL:AE014298
            GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
            BRENDA:3.4.25.1 KO:K03066 OMA:QNIKVIM GeneTree:ENSGT00550000074947
            EMBL:U97538 EMBL:AF043734 EMBL:AY051732 RefSeq:NP_608447.1
            UniGene:Dm.2162 ProteinModelPortal:O18413 SMR:O18413 DIP:DIP-20087N
            IntAct:O18413 MINT:MINT-759582 STRING:O18413 PaxDb:O18413
            PRIDE:O18413 EnsemblMetazoa:FBtr0077189 GeneID:33105
            KEGG:dme:Dmel_CG1489 CTD:33105 FlyBase:FBgn0020369
            InParanoid:O18413 OrthoDB:EOG47D7XJ PhylomeDB:O18413
            GenomeRNAi:33105 NextBio:781933 Bgee:O18413 GermOnline:CG1489
            Uniprot:O18413
        Length = 405

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 75/176 (42%), Positives = 109/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  +LR  EE++ +Q     +G+ ++ +D+   +V       + V +   I+   + P
Sbjct:    52 NAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTP 109

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  +GG D Q +EI+E +ELP+ 
Sbjct:   110 NCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVK 169

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H EL+  +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   170 HPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 225


>UNIPROTKB|E2RM61 [details] [associations]
            symbol:PSMC5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000074947
            EMBL:AAEX03006359 ProteinModelPortal:E2RM61 PRIDE:E2RM61
            Ensembl:ENSCAFT00000020231 OMA:DSNCELQ NextBio:20855489
            Uniprot:E2RM61
        Length = 251

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 75/171 (43%), Positives = 107/171 (62%)

Query:    66 LLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVA 125
             LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P+  VA
Sbjct:     9 LLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVA 66

Query:   126 LHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELY 185
             L   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL+
Sbjct:    67 LRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELF 126

Query:   186 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             + +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   127 EALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 177


>UNIPROTKB|P46470 [details] [associations]
            symbol:psmc5 "26S protease regulatory subunit 8"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 KO:K03066 CTD:5705 EMBL:X81986 RefSeq:NP_001081635.1
            UniGene:Xl.45 ProteinModelPortal:P46470 PRIDE:P46470 GeneID:397968
            KEGG:xla:397968 Uniprot:P46470
        Length = 461

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 76/176 (43%), Positives = 108/176 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    48 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 105

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   106 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 165

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             H E ++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GE
Sbjct:   166 HPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGE 221


>TAIR|locus:2028200 [details] [associations]
            symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
            "proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
            "cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
            vesicle transport" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
            RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
            SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
            EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
            GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
            Uniprot:Q9MAK9
        Length = 399

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 70/188 (37%), Positives = 119/188 (63%)

Query:    52 EEYVKDEQKNL---KRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVR 108
             E  V+  ++NL   K+E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V 
Sbjct:    29 ESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVG 88

Query:   109 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 168
               S +++E L     V L   +  ++  LP E D  +  +   +  +++Y+ +GG   Q 
Sbjct:    89 CRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQI 148

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228
             +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A++  A F++VV S 
Sbjct:   149 RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 208

Query:   229 FVQKYLGE 236
              + KY+GE
Sbjct:   209 IIDKYIGE 216


>TAIR|locus:2159996 [details] [associations]
            symbol:RPT4A "regulatory particle triple-A ATPase 4A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
            IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
            ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
            PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
            KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
            OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
        Length = 399

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 70/188 (37%), Positives = 119/188 (63%)

Query:    52 EEYVKDEQKNL---KRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVR 108
             E  V+  ++NL   K+E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V 
Sbjct:    29 ESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVG 88

Query:   109 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 168
               S +++E L     V L   +  ++  LP E D  +  +   +  +++Y+ +GG   Q 
Sbjct:    89 CRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQI 148

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228
             +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+LA+A+A++  A F++VV S 
Sbjct:   149 RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 208

Query:   229 FVQKYLGE 236
              + KY+GE
Sbjct:   209 IIDKYIGE 216


>ASPGD|ASPL0000034636 [details] [associations]
            symbol:AN2917 species:162425 "Emericella nidulans"
            [GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001306
            EMBL:AACD01000051 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
            OrthoDB:EOG4B01XN RefSeq:XP_660521.1 ProteinModelPortal:Q5B963
            STRING:Q5B963 EnsemblFungi:CADANIAT00010170 GeneID:2874156
            KEGG:ani:AN2917.2 Uniprot:Q5B963
        Length = 443

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 85/244 (34%), Positives = 138/244 (56%)

Query:     9 DPKPVSEPPPSTRSDLTEQWSDEDDLYSR-LKSLQRQLEF--IDIQEEY-VKDEQKNLKR 64
             D +P  +  P T  D+    +     Y+  LK L++Q++     + E+  VK+    L  
Sbjct:    19 DEEPEKKITPLTDEDIAVLKTYGAAPYANALKKLEKQIKERQASVNEKIGVKESDTGLAP 78

Query:    65 ELLR--AQEEVKRIQSVPLVIGQFMEMV------DQNNGIVGSTTGSNYYV----RILST 112
               L   A +  +  +  PL + +  +++      D++  ++     + + V    R+  T
Sbjct:    79 PHLWDVAADRQRMAEEQPLQVARCTKIIQDEKDSDKSKYVINVKQIAKFVVNLGERVSPT 138

Query:   113 INRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIR 172
                E L  +  +++ R+   ++  LPP+ D S+++++  +KPDVTY D+GGC  Q +++R
Sbjct:   139 DIEEDLSHTDRLSVDRNKYQIMLPLPPKIDPSVTMMTVEDKPDVTYGDVGGCKEQIEKLR 198

Query:   173 EAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232
             E VE+PL   E +  +GIDPP+G LLYGPPGTGKT+ A+AVAN T A FIRV+GSE VQK
Sbjct:   199 EVVEMPLLSPERFVNLGIDPPKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 258

Query:   233 YLGE 236
             Y+GE
Sbjct:   259 YVGE 262


>POMBASE|SPBC16C6.07c [details] [associations]
            symbol:rpt1 "19S proteasome regulatory subunit Rpt1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
            OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
            IntAct:O42931 STRING:O42931 PRIDE:O42931
            EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
            OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
        Length = 438

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 66/149 (44%), Positives = 98/149 (65%)

Query:    88 EMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISL 147
             +  ++N  ++     + + V +   ++   ++    V   R+  A+   LPP+ D S+++
Sbjct:   108 QSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTM 167

Query:   148 LSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT 207
             +   EKPDVTY D+GGC  Q + +RE VELPL   E + ++GIDPP+G++LYGPPGTGKT
Sbjct:   168 MQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKT 227

Query:   208 MLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             + A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   228 LCARAVANRTDATFIRVIGSELVQKYVGE 256


>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
            symbol:PF13_0063 "26S proteasome regulatory
            subunit 7, putative" species:5833 "Plasmodium falciparum"
            [GO:0005838 "proteasome regulatory particle" evidence=ISS]
            [GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
            GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
            RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
            MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
            GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
            Uniprot:Q8IEK3
        Length = 420

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 67/146 (45%), Positives = 96/146 (65%)

Query:    91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQ 150
             DQ   I+     + + V +   +    ++    V + R    +  +LPP+ D S+++++ 
Sbjct:    94 DQTKYIINVKQIAKFVVGLGDKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTV 153

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
              EKPD+TYNDIGGC  Q +++RE VE+PL   E +  +GIDPP+GVLLYGPPGTGKT+ A
Sbjct:   154 EEKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTA 213

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGE 236
             +A+AN T A FI V+GSE VQKY+GE
Sbjct:   214 RAIANRTDACFICVIGSELVQKYVGE 239


>UNIPROTKB|Q8IEK3 [details] [associations]
            symbol:PF13_0063 "26S proteasome regulatory subunit 7,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
            EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
            KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
            ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
            PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
            KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
        Length = 420

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 67/146 (45%), Positives = 96/146 (65%)

Query:    91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQ 150
             DQ   I+     + + V +   +    ++    V + R    +  +LPP+ D S+++++ 
Sbjct:    94 DQTKYIINVKQIAKFVVGLGDKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTV 153

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
              EKPD+TYNDIGGC  Q +++RE VE+PL   E +  +GIDPP+GVLLYGPPGTGKT+ A
Sbjct:   154 EEKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTA 213

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGE 236
             +A+AN T A FI V+GSE VQKY+GE
Sbjct:   214 RAIANRTDACFICVIGSELVQKYVGE 239


>CGD|CAL0005827 [details] [associations]
            symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
            RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
            GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
            KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
        Length = 428

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 71/177 (40%), Positives = 112/177 (63%)

Query:    60 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK 119
             ++L ++  + + ++K +QSV  +IG+ ++ +D    IV +++G  Y V   +TI +E LK
Sbjct:    73 RDLDKDYEKTENDIKALQSVGQIIGEVLKQLDDERYIVKTSSGPRYIVGCRNTIKKENLK 132

Query:   120 PSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPL 179
                 V+L   +  ++ +LP E D  +  ++  E  ++++N IGG   Q +E+RE +ELPL
Sbjct:   133 NGVRVSLDMTTLTIMRILPREVDPLVYNMTTFEPGEISFNGIGGLTEQIRELREVIELPL 192

Query:   180 THHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              + EL+ ++GI PP+GVLLYGPPGTGKT+LAKAVA    A FI    S  V KY+GE
Sbjct:   193 KNPELFTRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGE 249


>UNIPROTKB|J3QQM1 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 EMBL:AC015651 ChiTaRS:PSMC5
            HGNC:HGNC:9552 Ensembl:ENST00000582130 Uniprot:J3QQM1
        Length = 263

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 78/195 (40%), Positives = 117/195 (60%)

Query:    42 QRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTT 101
             Q  L  I+  +  V D+ +NL+R  L+AQ     + +   ++ + ++++ +    VG   
Sbjct:    22 QYYLSKIEELQLIVNDKSQNLRR--LQAQRN--ELNAKVRLLREELQLLQEQGSYVGEVV 77

Query:   102 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDI 161
              +    ++L  +      P+  VAL   S  L  +LP + D  +SL+   + PD TY  I
Sbjct:    78 RAMDKKKVLVKVT-----PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMI 132

Query:   162 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 221
             GG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   F
Sbjct:   133 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 192

Query:   222 IRVVGSEFVQKYLGE 236
             IRV GSE VQK++GE
Sbjct:   193 IRVSGSELVQKFIGE 207


>SGD|S000001628 [details] [associations]
            symbol:RPT1 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IMP] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=IDA] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IPI] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000001628 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:BK006944 GO:GO:0006511 GO:GO:0017111
            GO:GO:0045899 GO:GO:0045732 PDB:3VLF PDB:4A3V PDBsum:3VLF
            PDBsum:4A3V GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03061
            OMA:DIRWELI GeneTree:ENSGT00550000074978 OrthoDB:EOG4B01XN
            EMBL:Z22817 EMBL:X73571 EMBL:Z28145 PIR:S34354 RefSeq:NP_012777.1
            ProteinModelPortal:P33299 SMR:P33299 DIP:DIP-2883N IntAct:P33299
            MINT:MINT-612502 STRING:P33299 SWISS-2DPAGE:P33299 PaxDb:P33299
            PeptideAtlas:P33299 PRIDE:P33299 EnsemblFungi:YKL145W GeneID:853712
            KEGG:sce:YKL145W CYGD:YKL145w NextBio:974719 Genevestigator:P33299
            GermOnline:YKL145W Uniprot:P33299
        Length = 467

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 62/100 (62%), Positives = 80/100 (80%)

Query:   137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
             LPP  D S+++++  EKPDVTY+D+GGC  Q +++RE VELPL   E +  +GIDPP+G+
Sbjct:   187 LPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGI 246

Query:   197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             LLYGPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   247 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGE 286


>DICTYBASE|DDB_G0284517 [details] [associations]
            symbol:psmC6 "26S protease regulatory subunit S10B"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
            EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
            OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
        Length = 393

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 72/178 (40%), Positives = 110/178 (61%)

Query:    60 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR-ELL 118
             K LK++  + ++ +K IQ +  +IG+ +  +D+   IV +  G  Y VR  +  ++  LL
Sbjct:    37 KKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLL 96

Query:   119 KPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELP 178
              P A V L   +  ++ +LP E D  I  ++      V+Y +IGG   Q +E+RE VELP
Sbjct:    97 VPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELP 156

Query:   179 LTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             L   EL+ ++GI  P+GVLLYGPPGTGKT+LA+A+A++  A F++VV S  V KY+GE
Sbjct:   157 LMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGE 214


>UNIPROTKB|J3QLH6 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005102 "receptor binding" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0031595 "nuclear proteasome complex"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR003959 Pfam:PF00004
            GO:GO:0005524 EMBL:AC015651 ChiTaRS:PSMC5 HGNC:HGNC:9552
            Ensembl:ENST00000581842 Uniprot:J3QLH6
        Length = 215

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 75/173 (43%), Positives = 106/173 (61%)

Query:    61 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKP 120
             N K  LLR  EE++ +Q     +G+ +  +D+   +V       + V +   I+   + P
Sbjct:    45 NAKVRLLR--EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 102

Query:   121 SASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
             +  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ 
Sbjct:   103 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 162

Query:   181 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233
             H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK+
Sbjct:   163 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKF 215


>ASPGD|ASPL0000064945 [details] [associations]
            symbol:AN6988 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
            storage granule" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0043433 "negative regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001304 GO:GO:0030163 GO:GO:0017111
            EMBL:AACD01000117 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM OrthoDB:EOG44N21J
            RefSeq:XP_664592.1 ProteinModelPortal:Q5AXJ2 STRING:Q5AXJ2
            EnsemblFungi:CADANIAT00000491 GeneID:2869968 KEGG:ani:AN6988.2
            Uniprot:Q5AXJ2
        Length = 389

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 85/206 (41%), Positives = 117/206 (56%)

Query:    33 DLYSRLKSLQRQLEFIDIQEEYVKDE-QKNLKRELLRA-QEEVKRIQSVPLVIGQFMEMV 90
             D Y R K    +LE I  Q    + E Q+N     +R  +EE+  +Q     +G+ ++++
Sbjct:     4 DNYYRNKIESMKLEIIQGQAVLRRLEAQRNDYNSRVRLLREELGLLQQPGSYVGEVVKVM 63

Query:    91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQ 150
                  +V       Y V I   ++   L     VAL   S  L  +LP   D  +SL+  
Sbjct:    64 STKKVLVKVHPEGKYVVDIADGVDIGKLTVGKRVALLSDSYKLEKMLPSSVDPLVSLMMV 123

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
              + PD TY+ IGG D Q +EI+E +EL L H EL++ +GI  P+GVLLYGPPGTGKT+LA
Sbjct:   124 EKVPDSTYDMIGGLDQQIKEIKEVIELGLKHPELFESLGIAQPKGVLLYGPPGTGKTLLA 183

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGE 236
             +AVA+HT   FIRV GSE VQKY+GE
Sbjct:   184 RAVAHHTDCRFIRVSGSELVQKYIGE 209


>SGD|S000005785 [details] [associations]
            symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
            RNA polymerase II transcriptional preinitiation complex assembly"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IMP] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IMP] [GO:0032968 "positive regulation
            of transcription elongation from RNA polymerase II promoter"
            evidence=IMP] [GO:0006289 "nucleotide-excision repair"
            evidence=IGI] [GO:0019904 "protein domain specific binding"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
            GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
            PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
            ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
            MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
            EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
            NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
            Uniprot:P53549
        Length = 437

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 79/229 (34%), Positives = 136/229 (59%)

Query:    15 EPPPSTRSDLTEQWS---DEDDLYSR-LKSLQRQLEFIDIQEEYVKDEQKNLKR-ELL-- 67
             E P  T     E+ S    E + +++ L   +R+L      ++ +K  ++N++  E L  
Sbjct:    30 EQPQETEEHHEEEPSRVDPEQEAHNKALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYD 89

Query:    68 RAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALH 127
             + + ++K +QS+  +IG+ M+ + +   IV +++G  Y V + ++++R  LK    V L 
Sbjct:    90 KTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLD 149

Query:   128 RHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQ 187
               +  ++ +LP E D  +  ++  E+ ++T++ IGG   Q +E+RE +ELPL + E++++
Sbjct:   150 ITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQR 209

Query:   188 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             +GI PP+GVLLYGPPGTGKT+LAKAVA    A FI    S  V KY+GE
Sbjct:   210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE 258


>FB|FBgn0028687 [details] [associations]
            symbol:Rpt1 "Regulatory particle triple-A ATPase 1"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:AE013599 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
            KO:K03061 OMA:DIRWELI GeneTree:ENSGT00550000074978 HSSP:Q9LCZ4
            EMBL:AF145307 EMBL:AY061606 RefSeq:NP_477473.1 UniGene:Dm.3425
            SMR:Q7KMQ0 IntAct:Q7KMQ0 STRING:Q7KMQ0 EnsemblMetazoa:FBtr0088947
            GeneID:35701 KEGG:dme:Dmel_CG1341 UCSC:CG1341-RA CTD:35701
            FlyBase:FBgn0028687 HOGENOM:HOG000237377 InParanoid:Q7KMQ0
            OrthoDB:EOG4X3FGQ GenomeRNAi:35701 NextBio:794815 Uniprot:Q7KMQ0
        Length = 433

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 67/174 (38%), Positives = 112/174 (64%)

Query:    67 LRAQEEVKRIQSVPLVIGQFMEMVDQNNG----IVGSTTGSNYYVRILSTINRELLKPSA 122
             L A +++ + +  PL + +  ++++ ++     I+     + + V +  ++    ++   
Sbjct:    80 LAADKQILQNEQ-PLQVARCTKIINADSDDPKYIINVKQFAKFVVDLADSVAPTDIEEGM 138

Query:   123 SVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHH 182
              V + R+   +   LPP+ D +++++   +KPDVTY+D+GGC  Q +++RE VE PL H 
Sbjct:   139 RVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHP 198

Query:   183 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             E +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   199 EKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>POMBASE|SPCC1682.16 [details] [associations]
            symbol:rpt4 "19S proteasome regulatory subunit Rpt4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISM] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=NAS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
            GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
            PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
            STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
            GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
            NextBio:20800360 Uniprot:O74445
        Length = 388

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 71/208 (34%), Positives = 125/208 (60%)

Query:    29 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 88
             S+ D    + KS   Q    D + + ++   ++L ++  + ++++K +QSV  +IG+ ++
Sbjct:     2 SERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLK 61

Query:    89 MVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 148
              +D    IV +++G  Y V   + +++  L     V+L   +  ++ +LP E D  +  +
Sbjct:    62 QLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNM 121

Query:   149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208
             S  +  D+++  +GG + Q +E+RE +ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+
Sbjct:   122 SIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTL 181

Query:   209 LAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             LA+AVA      F++VV S  V KY+GE
Sbjct:   182 LARAVAASLGVNFLKVVSSAIVDKYIGE 209


>WB|WBGene00004501 [details] [associations]
            symbol:rpt-1 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
            GO:GO:0016887 GO:GO:0000502 GO:GO:0006511 EMBL:Z78012
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
            OMA:DIRWELI GeneTree:ENSGT00550000074978 PIR:T20152
            RefSeq:NP_506005.1 ProteinModelPortal:Q18787 SMR:Q18787
            IntAct:Q18787 MINT:MINT-212537 STRING:Q18787 PaxDb:Q18787
            PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1 EnsemblMetazoa:C52E4.4.2
            GeneID:179641 KEGG:cel:CELE_C52E4.4 UCSC:C52E4.4.1 CTD:179641
            WormBase:C52E4.4 InParanoid:Q18787 NextBio:906264 Uniprot:Q18787
        Length = 435

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 68/164 (41%), Positives = 106/164 (64%)

Query:    77 QSVPLVIGQFMEMV--DQNNG--IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNA 132
             Q  PL + +  +++  D+++   ++     + + V +  ++    ++    V + R+   
Sbjct:    91 QEQPLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQ 150

Query:   133 LVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP 192
             +   LP + D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E Y  +GI+P
Sbjct:   151 IHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEP 210

Query:   193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             P+GVLLYGPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 254


>UNIPROTKB|Q18787 [details] [associations]
            symbol:rpt-1 "26S protease regulatory subunit 7"
            species:6239 "Caenorhabditis elegans" [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
            GO:GO:0002119 GO:GO:0000003 GO:GO:0016887 GO:GO:0000502
            GO:GO:0006511 EMBL:Z78012 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
            GeneTree:ENSGT00550000074978 PIR:T20152 RefSeq:NP_506005.1
            ProteinModelPortal:Q18787 SMR:Q18787 IntAct:Q18787 MINT:MINT-212537
            STRING:Q18787 PaxDb:Q18787 PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1
            EnsemblMetazoa:C52E4.4.2 GeneID:179641 KEGG:cel:CELE_C52E4.4
            UCSC:C52E4.4.1 CTD:179641 WormBase:C52E4.4 InParanoid:Q18787
            NextBio:906264 Uniprot:Q18787
        Length = 435

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 68/164 (41%), Positives = 106/164 (64%)

Query:    77 QSVPLVIGQFMEMV--DQNNG--IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNA 132
             Q  PL + +  +++  D+++   ++     + + V +  ++    ++    V + R+   
Sbjct:    91 QEQPLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQ 150

Query:   133 LVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP 192
             +   LP + D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E Y  +GI+P
Sbjct:   151 IHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEP 210

Query:   193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             P+GVLLYGPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   211 PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 254


>UNIPROTKB|E1C4V5 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
            Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
        Length = 424

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   131 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 190

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   191 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 243


>UNIPROTKB|F1NFL8 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
            GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
            IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
            Uniprot:F1NFL8
        Length = 432

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   139 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 198

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   199 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 251


>UNIPROTKB|Q5E9F9 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
            EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
            UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
            Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
            GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
            Uniprot:Q5E9F9
        Length = 433

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>UNIPROTKB|F1PPH7 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
            OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
            RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
            Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
            Uniprot:F1PPH7
        Length = 433

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>UNIPROTKB|B7Z5E2 [details] [associations]
            symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
            regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
            HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
            IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
            Uniprot:B7Z5E2
        Length = 296

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:     3 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 62

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:    63 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 115


>UNIPROTKB|P35998 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
            evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
            GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
            GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
            GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
            GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
            EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
            EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
            RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
            ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
            MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
            OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
            REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
            PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
            Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
            GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
            neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
            PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
            ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
            Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
        Length = 433

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>UNIPROTKB|F1SB53 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            OMA:HIFTIHA EMBL:CU570825 Ensembl:ENSSSCT00000016802 Uniprot:F1SB53
        Length = 475

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   182 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 241

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   242 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 294


>UNIPROTKB|I3LJ30 [details] [associations]
            symbol:I3LJ30 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            Ensembl:ENSSSCT00000030050 OMA:WDLAYEN Uniprot:I3LJ30
        Length = 434

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   141 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 200

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   201 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 253


>UNIPROTKB|P46472 [details] [associations]
            symbol:psmc2 "26S protease regulatory subunit 7"
            species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0006511 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03061 CTD:5701 EMBL:X80157 EMBL:BC054143 PIR:S53709
            RefSeq:NP_001084136.1 UniGene:Xl.57157 ProteinModelPortal:P46472
            GeneID:399327 KEGG:xla:399327 Xenbase:XB-GENE-1000023
            Uniprot:P46472
        Length = 433

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>UNIPROTKB|Q4R4R0 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9541 "Macaca fascicularis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q9WZ49
            GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            EMBL:AB169834 ProteinModelPortal:Q4R4R0 SMR:Q4R4R0 PRIDE:Q4R4R0
            Uniprot:Q4R4R0
        Length = 433

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>UNIPROTKB|Q5R8D7 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9601 "Pongo abelii" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
            GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03061 CTD:5701 EMBL:CR859816 RefSeq:NP_001126144.1
            UniGene:Pab.13078 ProteinModelPortal:Q5R8D7 PRIDE:Q5R8D7
            GeneID:100173102 KEGG:pon:100173102 InParanoid:Q5R8D7
            Uniprot:Q5R8D7
        Length = 433

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>MGI|MGI:109555 [details] [associations]
            symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit,
            ATPase 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
            "ATP catabolic process" evidence=ISO] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISO] [GO:0017025 "TBP-class protein binding"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IDA] [GO:0030163 "protein catabolic process" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            MGI:MGI:109555 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
            GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            OrthoDB:EOG4RXZ05 ChiTaRS:PSMC2 EMBL:AK005083 EMBL:AK168548
            EMBL:BC005462 EMBL:U61283 IPI:IPI00270326 PIR:S39349
            UniGene:Mm.2462 ProteinModelPortal:P46471 SMR:P46471 IntAct:P46471
            STRING:P46471 PhosphoSite:P46471 REPRODUCTION-2DPAGE:P46471
            SWISS-2DPAGE:P46471 PaxDb:P46471 PRIDE:P46471 InParanoid:P46471
            Bgee:P46471 Genevestigator:P46471 GermOnline:ENSMUSG00000028932
            Uniprot:P46471
        Length = 433

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>ZFIN|ZDB-GENE-040426-1327 [details] [associations]
            symbol:psmc2 "proteasome (prosome, macropain) 26S
            subunit, ATPase 2" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-040426-1327 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            KO:K03061 OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978
            OrthoDB:EOG4RXZ05 HSSP:Q9LCZ4 EMBL:BX571796 EMBL:BC053187
            IPI:IPI00491385 RefSeq:NP_957260.1 UniGene:Dr.75589 STRING:Q7T3B1
            Ensembl:ENSDART00000019647 GeneID:393941 KEGG:dre:393941
            InParanoid:Q7T3B1 NextBio:20814913 Uniprot:Q7T3B1
        Length = 433

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/113 (54%), Positives = 85/113 (75%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 252


>SGD|S000005643 [details] [associations]
            symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
            GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
            EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
            RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
            DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
            PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
            GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
            NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
            Uniprot:P33297
        Length = 434

 Score = 299 (110.3 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 54/141 (38%), Positives = 91/141 (64%)

Query:    96 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD 155
             +V +++    ++ ++  ++ + LKP+  V +++ S  ++D LP E DS +  +   EKP 
Sbjct:   118 VVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPT 177

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
              TY+D+GG D Q +E+ EA+ LP+   + +K +GI  P+G L+YGPPGTGKT+LA+A A 
Sbjct:   178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237

Query:   216 HTTAAFIRVVGSEFVQKYLGE 236
              T A F+++   + VQ Y+GE
Sbjct:   238 QTNATFLKLAAPQLVQMYIGE 258

 Score = 58 (25.5 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 11/61 (18%), Positives = 31/61 (50%)

Query:    33 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ 92
             +L +R K L  ++     + + +  E   +  ++   +E++K  + +P ++   +E++D 
Sbjct:    29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDM 88

Query:    93 N 93
             N
Sbjct:    89 N 89


>RGD|3428 [details] [associations]
            symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase
          2" species:10116 "Rattus norvegicus" [GO:0000502 "proteasome complex"
          evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
          evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
          "nucleus" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
          [GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0006200 "ATP
          catabolic process" evidence=ISO] [GO:0006511 "ubiquitin-dependent
          protein catabolic process" evidence=IEA;ISO] [GO:0016887 "ATPase
          activity" evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
          evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
          evidence=IEA] [GO:0022624 "proteasome accessory complex"
          evidence=IEA;ISO;ISS] [GO:0030163 "protein catabolic process"
          evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
          InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
          InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
          RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
          GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242
          HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03061
          CTD:5701 OrthoDB:EOG4RXZ05 EMBL:D50694 EMBL:BC061542 EMBL:U13895
          IPI:IPI00421600 RefSeq:NP_150239.1 UniGene:Rn.1202
          ProteinModelPortal:Q63347 IntAct:Q63347 MINT:MINT-1794034
          STRING:Q63347 PhosphoSite:Q63347 PRIDE:Q63347 GeneID:25581
          KEGG:rno:25581 InParanoid:Q63347 NextBio:607227 Genevestigator:Q63347
          GermOnline:ENSRNOG00000012026 Uniprot:Q63347
        Length = 433

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 61/113 (53%), Positives = 84/113 (74%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FI V+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGE 252


>UNIPROTKB|Q63347 [details] [associations]
            symbol:Psmc2 "26S protease regulatory subunit 7"
            species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
            GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03061 CTD:5701 OrthoDB:EOG4RXZ05
            EMBL:D50694 EMBL:BC061542 EMBL:U13895 IPI:IPI00421600
            RefSeq:NP_150239.1 UniGene:Rn.1202 ProteinModelPortal:Q63347
            IntAct:Q63347 MINT:MINT-1794034 STRING:Q63347 PhosphoSite:Q63347
            PRIDE:Q63347 GeneID:25581 KEGG:rno:25581 InParanoid:Q63347
            NextBio:607227 Genevestigator:Q63347 GermOnline:ENSRNOG00000012026
            Uniprot:Q63347
        Length = 433

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 61/113 (53%), Positives = 84/113 (74%)

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 183
             V + R+   +   LPP+ D +++++   EKPDVTY+D+GGC  Q +++RE VE PL H E
Sbjct:   140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 199

Query:   184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              +  +GI+PP+GVLL+GPPGTGKT+ A+AVAN T A FI V+GSE VQKY+GE
Sbjct:   200 RFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGE 252


>UNIPROTKB|E9PM69 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
            ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
            PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
            Bgee:E9PM69 Uniprot:E9PM69
        Length = 397

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 67/193 (34%), Positives = 113/193 (58%)

Query:    50 IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPL---VIGQFMEMVDQNNG---IVGSTTGS 103
             I EE +K   + + +       E+K +   P      G  +++  Q  G   ++ ++T  
Sbjct:    29 IGEEVLKMSTEEIIQRTRLLDSEIKLLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQ 88

Query:   104 NYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGG 163
              Y++ ++  ++ E LKP   V +++ S  +++ LP E DS +  +   E+P   Y+DIGG
Sbjct:    89 TYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGG 148

Query:   164 CDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 223
              D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGKT+LA+A A  T A F++
Sbjct:   149 LDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLK 208

Query:   224 VVGSEFVQKYLGE 236
             + G + VQ ++G+
Sbjct:   209 LAGPQLVQMFIGD 221


>DICTYBASE|DDB_G0284415 [details] [associations]
            symbol:psmC3 "26S proteasome ATPase 3 subunit"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0284415 GO:GO:0005524 GO:GO:0005634
            GO:GO:0045335 GenomeReviews:CM000153_GR GO:GO:0030163 GO:GO:0000502
            HSSP:Q01853 GO:GO:0017111 EMBL:AAFI02000064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            RefSeq:XP_638617.1 ProteinModelPortal:Q54PN7 STRING:Q54PN7
            PRIDE:Q54PN7 EnsemblProtists:DDB0232967 GeneID:8624588
            KEGG:ddi:DDB_G0284415 InParanoid:Q54PN7 OMA:GALMYGP
            ProtClustDB:CLSZ2433711 Uniprot:Q54PN7
        Length = 421

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 68/216 (31%), Positives = 128/216 (59%)

Query:    32 DDLYSRLKSLQRQLEFIDIQEEYVKD--EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 89
             D++  + K L+ + + +  + E++    E  ++++ +    ++++    +P ++   +E+
Sbjct:    32 DEVNRKAKLLENETKVL--RSEHISKHLEMDSIQKRIKENNDKLQVNTQLPHLVANVVEI 89

Query:    90 VDQN-NG--------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             +D   +G        +V ++T    ++     ++ + L+P   V +++ S  ++D LPPE
Sbjct:    90 IDMVLDGETQPSKCVVVKASTRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPE 149

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   EKP   Y+DIGG D Q QE+ EAV LP+TH E ++ IGI PP+GVL+YG
Sbjct:   150 YDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYG 209

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T + ++++ G + VQ ++G+
Sbjct:   210 PPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGD 245


>UNIPROTKB|J9NWA6 [details] [associations]
            symbol:LOC100687152 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
            EMBL:AAEX03026457 Ensembl:ENSCAFT00000026372 OMA:REAVEQP
            Uniprot:J9NWA6
        Length = 434

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:   103 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 162

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   163 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 222

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   223 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 258


>UNIPROTKB|E9PMD8 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0001824 "blastocyst development" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IEA] [GO:0048471
            "perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR003959
            Pfam:PF00004 GO:GO:0005524 GO:GO:0001824 EMBL:AC090559
            HGNC:HGNC:9549 ChiTaRS:PSMC3 IPI:IPI00978171 SMR:E9PMD8
            Ensembl:ENST00000530651 Ensembl:ENST00000530887 Uniprot:E9PMD8
        Length = 260

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:    73 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 132

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   133 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 192

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   193 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 228


>UNIPROTKB|O42586 [details] [associations]
            symbol:psmc3-b "26S protease regulatory subunit 6A-B"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 EMBL:Y10460 UniGene:Xl.113 ProteinModelPortal:O42586
            Xenbase:XB-GENE-1009853 Uniprot:O42586
        Length = 404

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:    73 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 132

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   133 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 192

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   193 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 228


>UNIPROTKB|O42587 [details] [associations]
            symbol:psmc3-a "26S protease regulatory subunit 6A-A"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 CTD:4913 TIGRFAMs:TIGR01242 EMBL:Y10461
            RefSeq:NP_001080249.1 UniGene:Xl.12803 ProteinModelPortal:O42587
            PRIDE:O42587 GeneID:379941 KEGG:xla:379941 Xenbase:XB-GENE-962533
            HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 Uniprot:O42587
        Length = 405

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:    92 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 151

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   152 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 211

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   212 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 247


>TAIR|locus:2079742 [details] [associations]
            symbol:RPT5A "regulatory particle triple-A ATPase 5A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
            [GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
            sac development" evidence=IGI] [GO:0009555 "pollen development"
            evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
            "cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
            catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
            differentiation" evidence=RCA] [GO:0009630 "gravitropism"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0080129 "proteasome core complex assembly"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
            GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
            IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
            ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
            PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
            KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
            PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
        Length = 424

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 83/248 (33%), Positives = 138/248 (55%)

Query:     3 ASAMVLDPKPVSEPPPSTRS--DLTEQWSDEDDLYSRLKS-LQR-QLEFIDIQEEYVKDE 58
             A+ MV D     E   ++ S  D+T      D+    LK   QR  LE  D  +E +K+ 
Sbjct:     2 ATPMVEDTSSFEEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLE-CDSYKEKIKEN 60

Query:    59 QKNLK--RELLRAQEEVKRIQSV-PL----VIGQFMEMVDQNNG---IVGSTTGSNYYVR 108
             Q+ +K  ++L      +  I  + P       G  +++  Q  G   ++ ++T    ++ 
Sbjct:    61 QEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLP 120

Query:   109 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 168
             ++  ++ + LKP   V +++ S  ++D LP E DS +  +   EKP   YNDIGG + Q 
Sbjct:   121 VVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQI 180

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228
             QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGKT++A+A A  T A F+++ G +
Sbjct:   181 QELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240

Query:   229 FVQKYLGE 236
              VQ ++G+
Sbjct:   241 LVQMFIGD 248


>ZFIN|ZDB-GENE-030131-666 [details] [associations]
            symbol:psmc3 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 3" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-666 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
            TIGRFAMs:TIGR01242 EMBL:BX957297 IPI:IPI00817732 PRIDE:F1QJQ2
            Ensembl:ENSDART00000133705 ArrayExpress:F1QJQ2 Bgee:F1QJQ2
            Uniprot:F1QJQ2
        Length = 427

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 60/156 (38%), Positives = 100/156 (64%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:    96 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 155

Query:   141 ADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
              DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YG
Sbjct:   156 YDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYG 215

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             PPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   216 PPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 251


>GENEDB_PFALCIPARUM|PF13_0033 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory
            subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853
            GO:GO:0017111 EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 OMA:EHKEVES ProtClustDB:CLSZ2429012
            GO:GO:0005838 RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1
            PRIDE:Q8IEQ1 EnsemblProtists:PF13_0033:mRNA GeneID:814012
            KEGG:pfa:PF13_0033 EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 71/183 (38%), Positives = 113/183 (61%)

Query:    60 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK 119
             K L ++  + ++ +K +QSV  +IGQ ++ ++    IV +++G  Y V   S IN+  L 
Sbjct:    32 KELNKKYEKTEDNLKALQSVGQIIGQVLKQLEDEKFIVKASSGPRYVVGCKSKINKSKLV 91

Query:   120 PSASVALHRHSNALVDVLPPEADSSI-SLLSQSEKPD-----VTYNDIGGCDIQKQEIRE 173
                 V+L   +  ++  LP E D  + +++S  +K +     V YN IGG   Q +++RE
Sbjct:    92 IGTRVSLDMTTLTVMKRLPCEVDPLVFNMISDIDKSENSTNKVNYNQIGGLSEQIRQMRE 151

Query:   174 AVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233
              VELP+ +  LYK++GI  P+GVLLYGPPGTGKT+LA+A+A++    F+R+V S  V KY
Sbjct:   152 VVELPILNPYLYKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKY 211

Query:   234 LGE 236
             +GE
Sbjct:   212 IGE 214


>UNIPROTKB|Q8IEQ1 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory subunit,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            OMA:EHKEVES ProtClustDB:CLSZ2429012 GO:GO:0005838
            RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1 PRIDE:Q8IEQ1
            EnsemblProtists:PF13_0033:mRNA GeneID:814012 KEGG:pfa:PF13_0033
            EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 71/183 (38%), Positives = 113/183 (61%)

Query:    60 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK 119
             K L ++  + ++ +K +QSV  +IGQ ++ ++    IV +++G  Y V   S IN+  L 
Sbjct:    32 KELNKKYEKTEDNLKALQSVGQIIGQVLKQLEDEKFIVKASSGPRYVVGCKSKINKSKLV 91

Query:   120 PSASVALHRHSNALVDVLPPEADSSI-SLLSQSEKPD-----VTYNDIGGCDIQKQEIRE 173
                 V+L   +  ++  LP E D  + +++S  +K +     V YN IGG   Q +++RE
Sbjct:    92 IGTRVSLDMTTLTVMKRLPCEVDPLVFNMISDIDKSENSTNKVNYNQIGGLSEQIRQMRE 151

Query:   174 AVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233
              VELP+ +  LYK++GI  P+GVLLYGPPGTGKT+LA+A+A++    F+R+V S  V KY
Sbjct:   152 VVELPILNPYLYKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKY 211

Query:   234 LGE 236
             +GE
Sbjct:   212 IGE 214


>UNIPROTKB|F1P3L9 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
            accessory complex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
            EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
            Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
        Length = 389

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 59/145 (40%), Positives = 94/145 (64%)

Query:    92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
             + NG+   T    Y++ ++  ++ E LKP   V +++ S  +++ LP E DS +  +   
Sbjct:    70 EENGLE-LTNSQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVD 128

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGKT+LA+
Sbjct:   129 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 188

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             A A  T A F+++ G + VQ ++G+
Sbjct:   189 ACAAQTKATFLKLAGPQLVQMFIGD 213


>UNIPROTKB|F1MWE0 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:DAAA02041602 IPI:IPI00701790
            UniGene:Bt.49089 Ensembl:ENSBTAT00000028983 NextBio:20868523
            Uniprot:F1MWE0
        Length = 456

 Score = 300 (110.7 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
 Identities = 60/157 (38%), Positives = 96/157 (61%)

Query:    96 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD 155
             ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E DS +  +   E+P 
Sbjct:   124 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 183

Query:   156 VTYNDIGGCDIQKQEIREA-------------VE---LPLTHHELYKQIGIDPPRGVLLY 199
               Y+DIGG D Q QE+REA             VE   LP+ H E ++ +GI PP+GVL+Y
Sbjct:   184 EQYSDIGGLDKQIQEVREARHLTSLLCLSASLVEAIVLPMNHKEKFENLGIQPPKGVLMY 243

Query:   200 GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             GPPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   244 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 280

 Score = 45 (20.9 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query:    12 PVSEPPPSTRSDLTEQWSD-EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQ 70
             P  E P + +  +   W + E D     + L+   E I  +   +  E K +K E+LR  
Sbjct:     6 PKLESPVTRQEKMATVWDEAEQDGIGE-EVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVT 64

Query:    71 EEVKRIQ 77
              E++ ++
Sbjct:    65 HELQAMK 71


>POMBASE|SPAC3A11.12c [details] [associations]
            symbol:rpt5 "19S proteasome regulatory subunit Rpt5
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPAC3A11.12c GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 GO:GO:0008540
            OMA:GALMYGP EMBL:AB012136 PIR:T11634 RefSeq:XP_001713083.1
            ProteinModelPortal:O14126 STRING:O14126 PRIDE:O14126
            EnsemblFungi:SPAC3A11.12c.1 GeneID:3361462 KEGG:spo:SPAC3A11.12c
            OrthoDB:EOG40VZZ2 NextBio:20811506 Uniprot:O14126
        Length = 438

 Score = 278 (102.9 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
 Identities = 47/143 (32%), Positives = 89/143 (62%)

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
             + ++ ++T    ++ ++  +  E L P   + +++ S  ++D LP E DS +  +   EK
Sbjct:   120 SAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEK 179

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P   Y+DIGG   Q +E+ EA+ LP+   + ++++G+ PP+G L++GPPGTGKT+LA+A 
Sbjct:   180 PTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARAC 239

Query:   214 ANHTTAAFIRVVGSEFVQKYLGE 236
             A  + A F+++   + VQ ++G+
Sbjct:   240 AAQSNATFLKLAAPQLVQMFIGD 262

 Score = 68 (29.0 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
 Identities = 12/60 (20%), Positives = 34/60 (56%)

Query:    32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
             D+L SR + L+  ++ +  + + +  E+  +  ++   QE++   + +P ++G  +E++D
Sbjct:    37 DELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILD 96


>UNIPROTKB|F1NDQ1 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
            EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
            Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
        Length = 385

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/157 (40%), Positives = 97/157 (61%)

Query:    80 PLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 139
             PLVIG           +  S T   Y++ ++  ++ E LKP   V +++ S  +++ LP 
Sbjct:    60 PLVIGDMARC----QTVYDSET---YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPT 112

Query:   140 EADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 199
             E DS +  +   E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+Y
Sbjct:   113 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 172

Query:   200 GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             GPPGTGKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct:   173 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 209


>UNIPROTKB|E9PN50 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC090559
            HGNC:HGNC:9549 ChiTaRS:PSMC3 IPI:IPI00979951
            ProteinModelPortal:E9PN50 SMR:E9PN50 Ensembl:ENST00000531051
            ArrayExpress:E9PN50 Bgee:E9PN50 Uniprot:E9PN50
        Length = 239

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 64/205 (31%), Positives = 119/205 (58%)

Query:    32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
             +++  R + L  +++ +  +   V  E + +K ++    E++K  +++P ++   +E++D
Sbjct:     4 EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 63

Query:    92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
              +        G+N  +         ++K S    +++ S  +++ LP E DS +  +   
Sbjct:    64 VDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQGVNKDSYLILETLPTEYDSRVKAMEVD 122

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             E+P   Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGKT+LA+
Sbjct:   123 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 182

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             A A  T A F+++ G + VQ ++G+
Sbjct:   183 ACAAQTKATFLKLAGPQLVQMFIGD 207


>UNIPROTKB|H0YJS8 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] InterPro:IPR003959 Pfam:PF00004
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:AL133453 HGNC:HGNC:9553 Ensembl:ENST00000555339 Uniprot:H0YJS8
        Length = 195

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 63/141 (44%), Positives = 92/141 (65%)

Query:    96 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD 155
             IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  +S  +  +
Sbjct:    31 IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 90

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
             V+Y++IGG   Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGKT+LA+AVA+
Sbjct:    91 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 150

Query:   216 HTTAAFIRVVGSEFVQKYLGE 236
                  F++VV S  V KY+GE
Sbjct:   151 QLDCNFLKVVSSSIVDKYIGE 171


>FB|FBgn0028684 [details] [associations]
            symbol:Rpt5 "Regulatory particle triple-A ATPase 5"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
            "endopeptidase activity" evidence=IDA;NAS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
            evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 HSSP:Q01853 TIGRFAMs:TIGR01242 GO:GO:0008540
            ChiTaRS:PSMC3 FlyBase:FBgn0028684 EMBL:AF134402
            ProteinModelPortal:Q9XZC3 STRING:Q9XZC3 PRIDE:Q9XZC3
            InParanoid:Q9XZC3 ArrayExpress:Q9XZC3 Bgee:Q9XZC3 Uniprot:Q9XZC3
        Length = 431

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 68/198 (34%), Positives = 113/198 (57%)

Query:    48 IDIQEEYVKDEQKNLK--RELLRAQEEVKRIQSV-PLVI---GQFMEMVDQNNG---IVG 98
             I  Q E +KD  + +K  + L      V  +  V P      G    + +Q  G   ++ 
Sbjct:    59 IQAQNEKIKDNTEKIKVNKTLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIK 118

Query:    99 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTY 158
             ++T   Y++ ++  ++ E LKP     +++    +++ LP E D+ +  +   E+P   +
Sbjct:   119 TSTRQAYFLPVIGLVDAEKLKPGDLAGVNKDFYLILETLPAEYDARVKAMEVDERPTEQF 178

Query:   159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218
             +DIGG D Q QE+ EAV LP+TH E +K +GI PP+GV+LYGPPGTGKT+LA+A A  T 
Sbjct:   179 SDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVILYGPPGTGKTLLARACAAQTK 238

Query:   219 AAFIRVVGSEFVQKYLGE 236
             + F+++ G + VQ ++G+
Sbjct:   239 STFLKLAGPQLVQMFIGD 256


>GENEDB_PFALCIPARUM|PF11_0314 [details] [associations]
            symbol:PF11_0314 "26S protease subunit
            regulatory subunit 6a, putative" species:5833 "Plasmodium
            falciparum" [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
            EMBL:AE014186 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
            ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
            PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
            KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
        Length = 439

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 66/195 (33%), Positives = 116/195 (59%)

Query:    45 LEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---IVGSTT 101
             +E +D+++E   +E+  +K E       +K         G F ++ D+  G   ++ ++T
Sbjct:    78 VESLDLEDE---EEENEIKDEYDLYDNNLKLSHE-----G-FRDIDDEKRGKCMVIKTST 128

Query:   102 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDI 161
                 ++ +   I+   LKP   V +++ S  ++D LP E D+ +  +   EKP   Y+DI
Sbjct:   129 RQTIFLPVPGLIDASELKPGDLVGVNKDSYLIIDKLPQEYDNRVKAMEVIEKPSEDYSDI 188

Query:   162 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 221
             GG D Q +++ EA+ LP+ H E +++IGI PP+GVL++GPPGTGKT+LA+A A+ T A F
Sbjct:   189 GGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQTNATF 248

Query:   222 IRVVGSEFVQKYLGE 236
             +++ G + VQ ++G+
Sbjct:   249 LKLAGPQLVQMFIGD 263


>UNIPROTKB|Q8II60 [details] [associations]
            symbol:PF11_0314 "26S protease subunit regulatory subunit
            6a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000502
            "proteasome complex" evidence=ISS] [GO:0004175 "endopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 EMBL:AE014186
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
            ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
            ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
            PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
            KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
        Length = 439

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 66/195 (33%), Positives = 116/195 (59%)

Query:    45 LEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---IVGSTT 101
             +E +D+++E   +E+  +K E       +K         G F ++ D+  G   ++ ++T
Sbjct:    78 VESLDLEDE---EEENEIKDEYDLYDNNLKLSHE-----G-FRDIDDEKRGKCMVIKTST 128

Query:   102 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDI 161
                 ++ +   I+   LKP   V +++ S  ++D LP E D+ +  +   EKP   Y+DI
Sbjct:   129 RQTIFLPVPGLIDASELKPGDLVGVNKDSYLIIDKLPQEYDNRVKAMEVIEKPSEDYSDI 188

Query:   162 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 221
             GG D Q +++ EA+ LP+ H E +++IGI PP+GVL++GPPGTGKT+LA+A A+ T A F
Sbjct:   189 GGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQTNATF 248

Query:   222 IRVVGSEFVQKYLGE 236
             +++ G + VQ ++G+
Sbjct:   249 LKLAGPQLVQMFIGD 263


>UNIPROTKB|J3QRW1 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC015651
            ChiTaRS:PSMC5 HGNC:HGNC:9552 Ensembl:ENST00000579708 Uniprot:J3QRW1
        Length = 143

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 62/126 (49%), Positives = 83/126 (65%)

Query:   105 YYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGC 164
             + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG 
Sbjct:    18 FVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGL 77

Query:   165 DIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224
             D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV
Sbjct:    78 DKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 137

Query:   225 VGSEFV 230
              GSE V
Sbjct:   138 SGSELV 143


>ASPGD|ASPL0000010049 [details] [associations]
            symbol:AN4236 species:162425 "Emericella nidulans"
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 EMBL:BN001302 GO:GO:0030163
            GO:GO:0017111 EMBL:AACD01000068 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP OrthoDB:EOG40VZZ2
            RefSeq:XP_661840.1 ProteinModelPortal:Q5B5E4 STRING:Q5B5E4
            EnsemblFungi:CADANIAT00004422 GeneID:2873654 KEGG:ani:AN4236.2
            Uniprot:Q5B5E4
        Length = 465

 Score = 304 (112.1 bits), Expect = 7.0e-27, P = 7.0e-27
 Identities = 54/143 (37%), Positives = 90/143 (62%)

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
             + ++ ++T    Y+ ++  ++ E LKP   + +++ S  ++D LP E D+ +  +   EK
Sbjct:   146 SAVIKTSTRQTIYLPLIGLVDHEKLKPGDLIGVNKDSYLILDTLPAEYDNRVKAMEVDEK 205

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P   Y DIGG D Q +EI EA+  P+   E +K++GI  P+G L+YGPPGTGKT+LA+A 
Sbjct:   206 PTEKYTDIGGLDKQIEEIVEAIVWPMKEAERFKKLGIKAPKGALMYGPPGTGKTLLARAC 265

Query:   214 ANHTTAAFIRVVGSEFVQKYLGE 236
             A  T A F+++ G + VQ ++G+
Sbjct:   266 AAETNATFLKLAGPQLVQMFIGD 288


>CGD|CAL0002261 [details] [associations]
            symbol:RPT5 species:5476 "Candida albicans" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0002261 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000086 EMBL:AACQ01000085 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 RefSeq:XP_715432.1 RefSeq:XP_715502.1
            ProteinModelPortal:Q5A0X3 STRING:Q5A0X3 GeneID:3642858
            GeneID:3642911 KEGG:cal:CaO19.10635 KEGG:cal:CaO19.3123
            Uniprot:Q5A0X3
        Length = 454

 Score = 293 (108.2 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 52/143 (36%), Positives = 91/143 (63%)

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
             + ++ ++T    ++ ++  ++   LKP+  + +++ S  ++D LP E DS +  +   EK
Sbjct:   135 SAVIKTSTRQTIFLPMIGLVDPSKLKPNDLIGVNKDSYLVLDTLPSEYDSRVKAMEVDEK 194

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P   Y+DIGG D Q +E+ EAV LP+   + +K +GI PP+G L+YGPPGTGKT+LA+A 
Sbjct:   195 PTEDYSDIGGLDKQIEELIEAVVLPMKQADKFKNLGIKPPKGALMYGPPGTGKTLLARAC 254

Query:   214 ANHTTAAFIRVVGSEFVQKYLGE 236
             A  + A F+++   + VQ ++G+
Sbjct:   255 AAQSGATFLKLAAPQLVQMFIGD 277


>UNIPROTKB|J3QRR3 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC015651
            ChiTaRS:PSMC5 HGNC:HGNC:9552 Ensembl:ENST00000584880 Uniprot:J3QRR3
        Length = 127

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/86 (60%), Positives = 66/86 (76%)

Query:   157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216
             TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+H
Sbjct:     2 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 61

Query:   217 TTAAFIRVVGSEFVQKYLGEVWLKHK 242
             T   FIRV GSE VQK++GE    H+
Sbjct:    62 TDCTFIRVSGSELVQKFIGEARPPHR 87


>UNIPROTKB|E9PKD5 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0017111 EMBL:AC090559 HGNC:HGNC:9549 ChiTaRS:PSMC3
            IPI:IPI00978735 ProteinModelPortal:E9PKD5 SMR:E9PKD5 PRIDE:E9PKD5
            Ensembl:ENST00000524447 ArrayExpress:E9PKD5 Bgee:E9PKD5
            Uniprot:E9PKD5
        Length = 294

 Score = 206 (77.6 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 34/71 (47%), Positives = 53/71 (74%)

Query:   166 IQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225
             ++  E+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGKT+LA+A A  T A F+++ 
Sbjct:   137 VKAMELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLA 196

Query:   226 GSEFVQKYLGE 236
             G + VQ ++G+
Sbjct:   197 GPQLVQMFIGD 207

 Score = 82 (33.9 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 17/72 (23%), Positives = 38/72 (52%)

Query:    84 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 140
             G  +++  Q  G   ++ ++T   Y++ ++  ++ E LKP   V +++ S  +++ LP E
Sbjct:    73 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTE 132

Query:   141 ADSSISLLSQSE 152
              DS +  +   E
Sbjct:   133 YDSRVKAMELVE 144


>UNIPROTKB|G3V4X1 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AL161662
            HGNC:HGNC:9547 EMBL:AL355074 ProteinModelPortal:G3V4X1 SMR:G3V4X1
            Ensembl:ENST00000553835 ArrayExpress:G3V4X1 Bgee:G3V4X1
            Uniprot:G3V4X1
        Length = 84

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 49/82 (59%), Positives = 64/82 (78%)

Query:   140 EADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 199
             + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LY
Sbjct:     3 DTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILY 62

Query:   200 GPPGTGKTMLAKAVANHTTAAF 221
             GPPGTGKT+LAKAVAN T+A F
Sbjct:    63 GPPGTGKTLLAKAVANQTSATF 84


>ASPGD|ASPL0000069340 [details] [associations]
            symbol:AN7254 species:162425 "Emericella nidulans"
            [GO:0071470 "cellular response to osmotic stress" evidence=IEP]
            [GO:0097308 "cellular response to farnesol" evidence=IEP]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=IEA] [GO:0031134 "sister chromatid biorientation"
            evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:1900182 "positive regulation of protein
            localization to nucleus" evidence=IEA] [GO:0071630
            "nucleus-associated proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IEA] [GO:0051228
            "mitotic spindle disassembly" evidence=IEA] [GO:0016320
            "endoplasmic reticulum membrane fusion" evidence=IEA] [GO:0034727
            "piecemeal microautophagy of nucleus" evidence=IEA] [GO:0072671
            "mitochondria-associated protein catabolic process" evidence=IEA]
            [GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
            endoplasmic reticulum localization involved in endoplasmic
            reticulum polarization at cell division site" evidence=IEA]
            [GO:0016236 "macroautophagy" evidence=IEA] [GO:0043130 "ubiquitin
            binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0043332 "mating projection tip" evidence=IEA] [GO:0000790
            "nuclear chromatin" evidence=IEA] [GO:0034098 "Cdc48p-Npl4p-Ufd1p
            AAA ATPase complex" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
            AAA ATPase complex" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0000837 "Doa10p ubiquitin ligase complex"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0006950 GO:GO:0015031 GO:GO:0007049 EMBL:BN001304 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AACD01000124 RefSeq:XP_680523.1
            STRING:Q5AWS6 PRIDE:Q5AWS6 GeneID:2869922 KEGG:ani:AN7254.2
            OrthoDB:EOG47H8Z3 Uniprot:Q5AWS6
        Length = 823

 Score = 262 (97.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 49/82 (59%), Positives = 61/82 (74%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PPRG+L+YGPPGTGKT++A+AVA
Sbjct:   221 EVGYDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVA 280

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   281 NETGAFFFLINGPEIMSKMAGE 302

 Score = 247 (92.0 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 58/134 (43%), Positives = 80/134 (59%)

Query:   112 TINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEI 171
             TI+ E+L  S  V +     AL  V  P A   ++++   E P+V + DIGG +  K+E+
Sbjct:   457 TIDAEVLD-SLGVTMENFRYAL-GVSNPSALREVAVV---EVPNVRWEDIGGLEEVKREL 511

Query:   172 REAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231
              E+V+ P+ H E +++ G+ P RGVL YGPPGTGKTMLAKAVAN   A FI V G E + 
Sbjct:   512 IESVQYPVDHPEKFQKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLS 571

Query:   232 KYLGEVWLKHKQIF 245
              + GE     + IF
Sbjct:   572 MWFGESESNIRDIF 585

 Score = 36 (17.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query:   140 EADSSISLLSQSEKPD 155
             E D+S ++L + +KP+
Sbjct:    30 ELDTSTAILKKKKKPN 45


>UNIPROTKB|F1NLN4 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005737
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 OMA:NDIRPSA
            EMBL:AADN02009235 IPI:IPI00593232 Ensembl:ENSGALT00000019309
            Uniprot:F1NLN4
        Length = 704

 Score = 255 (94.8 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
 Identities = 52/105 (49%), Positives = 69/105 (65%)

Query:   142 DSSISLLSQSEK-PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
             ++ +++   S+  P VTY+ IGG   Q + IRE VELPL   EL+K  GI PPRGVLLYG
Sbjct:   300 EARMNIAEDSDHGPQVTYDMIGGLSSQLKTIRETVELPLKRAELFKSYGISPPRGVLLYG 359

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             PPGTGKT++AKA+AN   A    + G E + K+ GE   + +QIF
Sbjct:   360 PPGTGKTLIAKAIANEVGAHVTVINGPEIISKFYGESESRLRQIF 404

 Score = 246 (91.7 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
 Identities = 63/179 (35%), Positives = 98/179 (54%)

Query:    74 KRIQSVP--LVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK---PSASVALHR 128
             K ++ VP  L   + M++ D  +G VG+   +      L  + R L K   PS +     
Sbjct:   500 KLLKKVPHSLTAAEMMQLADSAHGYVGADLAALCKEAGLYALRRALGKRAHPSDTEVAGS 559

Query:   129 HSNALVDVLPPEADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYK 186
                A  D L    D   S + +   + P V+++DIGG +  K ++++AVE PL H + + 
Sbjct:   560 VMIAFNDFLQGMKDVRPSAMREVAVDVPKVSWSDIGGLEDVKLKLKQAVEWPLKHPDSFI 619

Query:   187 QIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             ++GI PP+GVLLYGPPG  KTM+AKA+A+ +   F+ V G E + KY+GE     ++IF
Sbjct:   620 RMGIQPPKGVLLYGPPGCSKTMIAKALAHESGLNFLAVKGPELMNKYVGESERAVREIF 678

 Score = 36 (17.7 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query:    22 SDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEE 53
             S++ E   ++ DL      L  QL  +DI E+
Sbjct:   183 SEVCEPDLEKSDLEMSALDLSLQLSRMDIDED 214


>UNIPROTKB|F1RQN5 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 GO:GO:0005524 GO:GO:0005737
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 OMA:NDIRPSA
            EMBL:FP102941 EMBL:CU463172 Ensembl:ENSSSCT00000009950
            Uniprot:F1RQN5
        Length = 778

 Score = 266 (98.7 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 61/138 (44%), Positives = 84/138 (60%)

Query:   113 INRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD----VTYNDIGGCDIQK 168
             IN E L  S SV    +++    +      +   + ++S+  D    VTY+ IGG + Q 
Sbjct:   297 INEERLLKSPSVGAKCNTDTFYFISSTTRVNFTKVCTKSKDQDNQLKVTYDMIGGLNSQL 356

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GS 227
             +EIRE +ELPL   EL+K  GI PPRGVLLYGPPGTGKTM+A+AVAN    A++ V+ G 
Sbjct:   357 KEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVANEV-GAYVSVINGP 415

Query:   228 EFVQKYLGEVWLKHKQIF 245
             E + K+ GE   + +QIF
Sbjct:   416 EIISKFYGETEARLRQIF 433

 Score = 246 (91.7 bits), Expect = 8.4e-20, P = 8.4e-20
 Identities = 64/180 (35%), Positives = 100/180 (55%)

Query:    74 KRIQSVP--LVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK----PSASVALH 127
             K ++ VP  L   + +++ +  +G VG+   +      L  + R L K    P + VA  
Sbjct:   529 KLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLYALRRVLRKQPNLPDSKVA-G 587

Query:   128 RHSNALVDVLPPEADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELY 185
                  L D L    D   S + +   + P+V+++DIGG +  K ++++AVE PL H E +
Sbjct:   588 LVKITLKDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPESF 647

Query:   186 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              Q+GI PP+GVLLYGPPG  KTM+AKA+AN +   F+ + G E + KY+GE     ++IF
Sbjct:   648 TQMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIF 707


>POMBASE|SPAC1565.08 [details] [associations]
            symbol:cdc48 "AAA family ATPase Cdc48" species:4896
            "Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005789
            "endoplasmic reticulum membrane" evidence=ISO] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=IGI] [GO:0006906 "vesicle fusion"
            evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISM]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=ISS] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IGI] [GO:0033554 "cellular response to
            stress" evidence=IGI] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase
            complex" evidence=ISO] [GO:0051230 "spindle disassembly"
            evidence=TAS] [GO:0061166 "establishment of endoplasmic reticulum
            localization involved in endoplasmic reticulum polarization at cell
            division site" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 PomBase:SPAC1565.08 Pfam:PF02359
            GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0033554 GO:GO:0016887 GO:GO:0000790 GO:GO:0030433
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0006906 GO:GO:0033047 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0061166
            OrthoDB:EOG47H8Z3 RefSeq:NP_593287.2 ProteinModelPortal:Q9P3A7
            SMR:Q9P3A7 IntAct:Q9P3A7 STRING:Q9P3A7 PRIDE:Q9P3A7
            EnsemblFungi:SPAC1565.08.1 GeneID:2542744 KEGG:spo:SPAC1565.08
            OMA:IVTIHPC NextBio:20803789 GO:GO:0034098 GO:GO:0030970
            GO:GO:0051230 Uniprot:Q9P3A7
        Length = 815

 Score = 265 (98.3 bits), Expect = 8.3e-22, P = 8.3e-22
 Identities = 50/87 (57%), Positives = 63/87 (72%)

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
             +S   +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PPRG+L+YGPPGTGKT++
Sbjct:   215 ESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLM 274

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGE 236
             A+AVAN T A F  + G E + K  GE
Sbjct:   275 ARAVANETGAFFFLINGPEIMSKMAGE 301

 Score = 227 (85.0 bits), Expect = 9.9e-18, P = 9.9e-18
 Identities = 43/94 (45%), Positives = 63/94 (67%)

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             E P+V + DIGG +  K+E+RE V++P+ + E + + G+ P +GVL +GPPGTGKT+LAK
Sbjct:   490 EVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAK 549

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A+AN  +A FI V G E +  + GE     + IF
Sbjct:   550 AIANECSANFISVKGPELLSMWFGESESNVRDIF 583


>UNIPROTKB|G4N517 [details] [associations]
            symbol:MGG_05193 "Cell division control protein 48"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
            EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
            Uniprot:G4N517
        Length = 820

 Score = 265 (98.3 bits), Expect = 8.4e-22, P = 8.4e-22
 Identities = 51/82 (62%), Positives = 61/82 (74%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PPRGVLLYGPPGTGKT++A+AVA
Sbjct:   218 EVGYDDIGGCRKQMAQIREMVELPLRHPQLFKSIGIKPPRGVLLYGPPGTGKTLMARAVA 277

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   278 NETGAFFFLINGPEIMSKMAGE 299

 Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 60/134 (44%), Positives = 79/134 (58%)

Query:   112 TINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEI 171
             TI+ E+L  S  V +     AL  V  P A   ++++   E P+V + DIGG D  KQ++
Sbjct:   454 TIDAEVLD-SLGVTMENFRFAL-GVSNPSALREVAVV---EVPNVRWEDIGGLDEVKQDL 508

Query:   172 REAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231
             RE V+ P+ H E + + G+ P RGVL YGPPGTGKTMLAKAVAN   A FI V G E + 
Sbjct:   509 REQVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLS 568

Query:   232 KYLGEVWLKHKQIF 245
              + GE     + IF
Sbjct:   569 MWFGESESNIRDIF 582


>UNIPROTKB|E2RC37 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 CTD:166378 OMA:NDIRPSA
            EMBL:AAEX03011797 RefSeq:XP_540960.2 ProteinModelPortal:E2RC37
            Ensembl:ENSCAFT00000006393 GeneID:483840 KEGG:cfa:483840
            Uniprot:E2RC37
        Length = 893

 Score = 265 (98.3 bits), Expect = 9.8e-22, P = 9.8e-22
 Identities = 62/138 (44%), Positives = 83/138 (60%)

Query:   113 INRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD----VTYNDIGGCDIQK 168
             IN E L  SA V    +++    +      + I + + SE+ D    VTY+ IGG   Q 
Sbjct:   303 INEERLLKSACVGAKCNTDIFYFISSTTRINFIKVHTNSEEEDNQFKVTYDMIGGLSSQL 362

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GS 227
             + IRE +ELPL   EL+K  GI PPRGVLLYGPPGTGKTM+A+AVAN    A++ V+ G 
Sbjct:   363 KAIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVANEV-GAYVSVINGP 421

Query:   228 EFVQKYLGEVWLKHKQIF 245
             E + K+ GE   + +QIF
Sbjct:   422 EIISKFYGETEARLRQIF 439

 Score = 236 (88.1 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 62/179 (34%), Positives = 101/179 (56%)

Query:    74 KRIQSVPLVIGQ--FMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK-PSASVALHRH- 129
             K +Q VP ++ +   +++ +  +G VG+   +      L  + R L K P+ S +     
Sbjct:   535 KLLQRVPHLLTEVELLQLANSAHGYVGADLKALCNEAGLYALRRVLNKQPNLSDSKMAGL 594

Query:   130 -SNALVDVLPPEADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYK 186
                 L D L    D   S + +   + P+V+++DIGG +  K ++++AVE PL H E + 
Sbjct:   595 VKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPESFI 654

Query:   187 QIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             ++GI PP+GVLLYGPPG  KTM+AKA+AN +   F+ + G E + KY+GE     ++IF
Sbjct:   655 RMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIF 713


>UNIPROTKB|F1MFP1 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 GO:GO:0005524 GO:GO:0005737
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 OMA:NDIRPSA
            EMBL:DAAA02044760 EMBL:DAAA02044756 EMBL:DAAA02044757
            EMBL:DAAA02044758 EMBL:DAAA02044759 IPI:IPI00912761
            Ensembl:ENSBTAT00000000136 Uniprot:F1MFP1
        Length = 771

 Score = 261 (96.9 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 53/97 (54%), Positives = 69/97 (71%)

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
             Q+ +  VTY+ IGG + Q +EIRE +ELPL   EL+K  GI PPRGVLLYGPPGTGKTM+
Sbjct:   335 QANQLKVTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMI 394

Query:   210 AKAVANHTTAAFIRVV-GSEFVQKYLGEVWLKHKQIF 245
             A+AVAN    A++ V+ G E + K+ GE   + +QIF
Sbjct:   395 ARAVANEV-GAYVSVINGPEIISKFYGETEARLRQIF 430

 Score = 242 (90.2 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 62/180 (34%), Positives = 100/180 (55%)

Query:    74 KRIQSVP--LVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK----PSASVALH 127
             K ++ VP  L   + +++ +  +G VG+   +      L  + R L +    P + +A  
Sbjct:   526 KLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLHALRRVLRRQPNLPDSKMA-G 584

Query:   128 RHSNALVDVLPPEADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELY 185
                  L D L    D   S + +   + P+V+++DIGG +  K ++++AVE PL H E +
Sbjct:   585 LVKITLKDFLQGMNDIRPSAMREVAVDVPNVSWSDIGGLENVKLKLKQAVEWPLKHPESF 644

Query:   186 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              Q+GI PP+GVLLYGPPG  KTM+AKA+AN +   F+ + G E + KY+GE     ++IF
Sbjct:   645 TQMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIF 704


>SGD|S000002284 [details] [associations]
            symbol:CDC48 "AAA ATPase involved in multiple processes"
            species:4932 "Saccharomyces cerevisiae" [GO:0005829 "cytosol"
            evidence=IDA] [GO:0043332 "mating projection tip" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0030433 "ER-associated protein catabolic process"
            evidence=IMP] [GO:0000837 "Doa10p ubiquitin ligase complex"
            evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
            "cell cycle" evidence=IEA] [GO:0015031 "protein transport"
            evidence=IEA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IEA] [GO:1900182 "positive regulation of
            protein localization to nucleus" evidence=IMP] [GO:0051228 "mitotic
            spindle disassembly" evidence=IMP] [GO:0016320 "endoplasmic
            reticulum membrane fusion" evidence=IMP] [GO:0034517 "ribophagy"
            evidence=IMP] [GO:0071712 "ER-associated misfolded protein
            catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IMP] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0043130 "ubiquitin binding" evidence=IDA]
            [GO:0036266 "Cdc48p-Npl4p-Vms1p AAA ATPase complex" evidence=IDA]
            [GO:0071630 "nucleus-associated proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0034727 "piecemeal
            microautophagy of nucleus" evidence=IMP] [GO:0016236
            "macroautophagy" evidence=IMP] [GO:0031134 "sister chromatid
            biorientation" evidence=IMP] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0072671 "mitochondria-associated protein
            catabolic process" evidence=IMP] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0005789 "endoplasmic reticulum membrane"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 SGD:S000002284 Pfam:PF02359
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0043332
            EMBL:BK006938 GO:GO:0016887 eggNOG:COG0464 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0016236 GO:GO:0031134
            GO:GO:0043130 GO:GO:0034727 GO:GO:0016320 GO:GO:0034517
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OrthoDB:EOG47H8Z3 GO:GO:0034098 GO:GO:0030970
            EMBL:X56956 EMBL:Z74174 PIR:S67669 RefSeq:NP_010157.1
            ProteinModelPortal:P25694 SMR:P25694 DIP:DIP-2704N IntAct:P25694
            MINT:MINT-547129 STRING:P25694 TCDB:3.A.16.1.2 PaxDb:P25694
            PeptideAtlas:P25694 PRIDE:P25694 EnsemblFungi:YDL126C GeneID:851431
            KEGG:sce:YDL126C CYGD:YDL126c GeneTree:ENSGT00700000104534
            OMA:TIPRITW NextBio:968654 Genevestigator:P25694 GermOnline:YDL126C
            GO:GO:0036266 GO:GO:0000837 GO:GO:0071629 GO:GO:0071712
            GO:GO:0072671 GO:GO:0051228 GO:GO:0071630 GO:GO:1900182
            Uniprot:P25694
        Length = 835

 Score = 261 (96.9 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 50/82 (60%), Positives = 61/82 (74%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PPRGVL+YGPPGTGKT++A+AVA
Sbjct:   210 EVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMARAVA 269

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   270 NETGAFFFLINGPEVMSKMAGE 291

 Score = 235 (87.8 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 48/106 (45%), Positives = 69/106 (65%)

Query:   142 DSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 199
             +S+ S L ++  E  +VT++D+GG D  K+E++E VE P+ H + Y + G+ P +GVL Y
Sbjct:   468 NSNPSALRETVVESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFY 527

Query:   200 GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             GPPGTGKT+LAKAVA   +A FI V G E +  + GE     + IF
Sbjct:   528 GPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIF 573


>CGD|CAL0000732 [details] [associations]
            symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
            evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
            [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
            AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
            ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
            evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:1900182 "positive regulation of protein
            localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IEA] [GO:0071630
            "nucleus-associated proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
            disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
            membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
            microautophagy of nucleus" evidence=IEA] [GO:0072671
            "mitochondria-associated protein catabolic process" evidence=IEA]
            [GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
            endoplasmic reticulum localization involved in endoplasmic
            reticulum polarization at cell division site" evidence=IEA]
            [GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
            surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
            GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
            ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
            GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
            Uniprot:Q59WG3
        Length = 826

 Score = 259 (96.2 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 48/82 (58%), Positives = 61/82 (74%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PP+G+L+YGPPGTGKT++A+AVA
Sbjct:   211 EVGYDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVA 270

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   271 NETGAFFFLINGPEIMSKMAGE 292

 Score = 230 (86.0 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 48/106 (45%), Positives = 69/106 (65%)

Query:   142 DSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 199
             +S+ S L ++  E  +VT++DIGG D  K E++E VE P+ H + Y++ G+ P +GVL +
Sbjct:   469 NSNPSALRETVVENVNVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFF 528

Query:   200 GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             GPPGTGKT+LAKAVA   +A FI V G E +  + GE     + IF
Sbjct:   529 GPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIF 574

 Score = 41 (19.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 6/24 (25%), Positives = 16/24 (66%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             ++ ++ +++ ID++EE +  E  N
Sbjct:   431 MQQIREKMDLIDLEEETIDTEVLN 454


>UNIPROTKB|Q59WG3 [details] [associations]
            symbol:CDC48 "Putative uncharacterized protein CDC48"
            species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
            GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
            ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
            GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
            Uniprot:Q59WG3
        Length = 826

 Score = 259 (96.2 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 48/82 (58%), Positives = 61/82 (74%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +IRE VELPL H +L+K IGI PP+G+L+YGPPGTGKT++A+AVA
Sbjct:   211 EVGYDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVA 270

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   271 NETGAFFFLINGPEIMSKMAGE 292

 Score = 230 (86.0 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 48/106 (45%), Positives = 69/106 (65%)

Query:   142 DSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 199
             +S+ S L ++  E  +VT++DIGG D  K E++E VE P+ H + Y++ G+ P +GVL +
Sbjct:   469 NSNPSALRETVVENVNVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFF 528

Query:   200 GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             GPPGTGKT+LAKAVA   +A FI V G E +  + GE     + IF
Sbjct:   529 GPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIF 574

 Score = 41 (19.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 6/24 (25%), Positives = 16/24 (66%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             ++ ++ +++ ID++EE +  E  N
Sbjct:   431 MQQIREKMDLIDLEEETIDTEVLN 454


>ZFIN|ZDB-GENE-060312-22 [details] [associations]
            symbol:zgc:136908 "zgc:136908" species:7955 "Danio
            rerio" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 ZFIN:ZDB-GENE-060312-22
            GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 HOGENOM:HOG000223224
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            GeneTree:ENSGT00700000104534 HOVERGEN:HBG001226 EMBL:CU571167
            EMBL:BC114306 IPI:IPI00835697 RefSeq:NP_001035017.1
            UniGene:Dr.47664 SMR:Q29RA2 STRING:Q29RA2
            Ensembl:ENSDART00000100551 GeneID:563679 KEGG:dre:563679
            InParanoid:Q29RA2 OrthoDB:EOG4WWRMB NextBio:20885016 Uniprot:Q29RA2
        Length = 805

 Score = 257 (95.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             D+ Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   202 DIGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLVARAVA 261

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   262 NETGAFFFLINGPEIMSKLAGE 283

 Score = 214 (80.4 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 43/107 (40%), Positives = 66/107 (61%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P V + DIGG D  K+E++E V+ P+ + + + + G+ P RGVL 
Sbjct:   459 SQSNPSALRETVVEVPHVNWEDIGGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLF 518

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A F+ + G E +  + GE     + +F
Sbjct:   519 YGPPGCGKTLLAKAIANECQANFVSIKGPELLTMWFGESEANVRDVF 565


>UNIPROTKB|E1BTS8 [details] [associations]
            symbol:LOC426240 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            GeneTree:ENSGT00700000104534 EMBL:AADN02060646 EMBL:AADN02060647
            EMBL:AADN02060648 EMBL:AADN02060649 EMBL:AADN02060650
            EMBL:AADN02060651 EMBL:AADN02060652 EMBL:AADN02060653
            IPI:IPI00823321 Ensembl:ENSGALT00000039430 ArrayExpress:E1BTS8
            Uniprot:E1BTS8
        Length = 804

 Score = 255 (94.8 bits), Expect = 9.6e-21, P = 9.6e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   455 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 514

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   515 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 561

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   418 LQAIRKKMDLIDLEDETIDAEVMN 441


>UNIPROTKB|P23787 [details] [associations]
            symbol:vcp "Transitional endoplasmic reticulum ATPase"
            species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
            "response to DNA damage stimulus" evidence=ISS] [GO:0016567
            "protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
            via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
            evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
            [GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
            "site of double-strand break" evidence=ISS] [GO:0035101 "FACT
            complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
            GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
            GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
            EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
            ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
            KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
        Length = 805

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>UNIPROTKB|Q6GL04 [details] [associations]
            symbol:vcp "Transitional endoplasmic reticulum ATPase"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
            "chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
            "translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
            protein catabolic process" evidence=ISS] [GO:0032403 "protein
            complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
            evidence=ISS] [GO:0035861 "site of double-strand break"
            evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
            GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
            GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
            GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
            EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
            ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
            GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
            InParanoid:Q6GL04 Uniprot:Q6GL04
        Length = 805

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>UNIPROTKB|G3X757 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0035861 "site of double-strand break"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006302 "double-strand break repair"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
            GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
            ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
        Length = 806

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>UNIPROTKB|Q3ZBT1 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=ISS]
            [GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
            "site of double-strand break" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
            "ER-associated protein catabolic process" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
            "lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
            UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
            STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
            InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
        Length = 806

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>UNIPROTKB|P55072 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
            evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
            complex binding" evidence=IEA] [GO:0042802 "identical protein
            binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
            evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
            [GO:0043231 "intracellular membrane-bounded organelle"
            evidence=ISS] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
            damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=IDA] [GO:0019904 "protein domain specific binding"
            evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
            protein catabolic process" evidence=IMP;TAS] [GO:0030968
            "endoplasmic reticulum unfolded protein response" evidence=TAS]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
            ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
            apoptotic process" evidence=TAS] [GO:0045184 "establishment of
            protein localization" evidence=TAS] [GO:0019985 "translesion
            synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
            evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IMP] [GO:0032436 "positive regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IDA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
            GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
            GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
            GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
            PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
            GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
            PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
            PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
            EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
            IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
            PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
            PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
            DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
            PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
            REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
            PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
            KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
            HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
            MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
            InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
            EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
            ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
            Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
        Length = 806

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>MGI|MGI:99919 [details] [associations]
            symbol:Vcp "valosin containing protein" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
            "receptor binding" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
            "cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
            "double-strand break repair" evidence=ISO] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IGI]
            [GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=IDA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
            [GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
            evidence=ISO] [GO:0019904 "protein domain specific binding"
            evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=ISO] [GO:0031334 "positive regulation of protein complex
            assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
            evidence=ISO;IDA] [GO:0032403 "protein complex binding"
            evidence=ISO] [GO:0032436 "positive regulation of proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
            "identical protein binding" evidence=ISO] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=ISO]
            [GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
            binding" evidence=ISO] [GO:0045732 "positive regulation of protein
            catabolic process" evidence=ISO] [GO:0051260 "protein
            homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
            evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
            GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
            GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
            GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
            GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
            GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
            PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
            ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
            EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
            EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
            EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
            UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
            PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
            PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
            SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
            STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
            UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
            Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
            UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
            EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
            Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
        Length = 806

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>RGD|621595 [details] [associations]
            symbol:Vcp "valosin-containing protein" species:10116 "Rattus
            norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
            [GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
            [GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
            process" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
            evidence=IEA] [GO:0016567 "protein ubiquitination"
            evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0018279 "protein N-linked glycosylation via asparagine"
            evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
            evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
            evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
            evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
            process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
            regulation of protein complex assembly" evidence=IEA;ISO]
            [GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
            "protein complex binding" evidence=IPI] [GO:0032436 "positive
            regulation of proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
            break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
            evidence=IDA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IDA] [GO:0043234 "protein complex"
            evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
            "positive regulation of protein catabolic process" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
            "aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
            GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
            GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
            GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
            GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
            IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
            ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
            MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
            World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
            GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
            NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
            Uniprot:P46462
        Length = 806

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>UNIPROTKB|P03974 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9823 "Sus scrofa" [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=ISS]
            [GO:0035861 "site of double-strand break" evidence=ISS] [GO:0006302
            "double-strand break repair" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
            "ER-associated protein catabolic process" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
            "lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            CTD:7415 OrthoDB:EOG45TCMK EMBL:M30143 PIR:A26360
            RefSeq:NP_999445.1 UniGene:Ssc.856 ProteinModelPortal:P03974
            SMR:P03974 STRING:P03974 GeneID:397524 KEGG:ssc:397524
            Uniprot:P03974
        Length = 806

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 220 (82.5 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
 Identities = 44/107 (41%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E+++ V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>UNIPROTKB|F1SIH8 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
            EMBL:FP102396 Ensembl:ENSSSCT00000005837 ArrayExpress:F1SIH8
            Uniprot:F1SIH8
        Length = 808

 Score = 255 (94.8 bits), Expect = 9.7e-21, P = 9.7e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>UNIPROTKB|F1P4V8 [details] [associations]
            symbol:LOC426240 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
            EMBL:AADN02060646 EMBL:AADN02060647 EMBL:AADN02060648
            EMBL:AADN02060649 EMBL:AADN02060650 EMBL:AADN02060651
            EMBL:AADN02060652 EMBL:AADN02060653 IPI:IPI00585183
            Ensembl:ENSGALT00000003093 ArrayExpress:F1P4V8 Uniprot:F1P4V8
        Length = 810

 Score = 255 (94.8 bits), Expect = 9.8e-21, P = 9.8e-21
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 223 (83.6 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   461 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 520

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   521 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 567

 Score = 43 (20.2 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   424 LQAIRKKMDLIDLEDETIDAEVMN 447


>UNIPROTKB|E2RLQ9 [details] [associations]
            symbol:VCP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0035861 "site of double-strand break"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006302 "double-strand break repair"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
            GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
            NextBio:20856352 Uniprot:E2RLQ9
        Length = 822

 Score = 255 (94.8 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   216 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 275

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   276 NETGAFFFLINGPEIMSKLAGE 297

 Score = 223 (83.6 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   473 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 532

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   533 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 579

 Score = 43 (20.2 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   436 LQAIRKKMDLIDLEDETIDAEVMN 459


>FB|FBgn0261014 [details] [associations]
            symbol:TER94 "TER94" species:7227 "Drosophila melanogaster"
            [GO:0045169 "fusome" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0005783 "endoplasmic reticulum" evidence=NAS] [GO:0007030
            "Golgi organization" evidence=IMP] [GO:0007317 "regulation of pole
            plasm oskar mRNA localization" evidence=IMP] [GO:0016320
            "endoplasmic reticulum membrane fusion" evidence=ISS] [GO:0000226
            "microtubule cytoskeleton organization" evidence=IMP] [GO:0007029
            "endoplasmic reticulum organization" evidence=IMP] [GO:0045451
            "pole plasm oskar mRNA localization" evidence=IMP] [GO:0008103
            "oocyte microtubule cytoskeleton polarization" evidence=IMP]
            [GO:0008104 "protein localization" evidence=IMP] [GO:0042052
            "rhabdomere development" evidence=IMP] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0032436 "positive regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0000502 "proteasome complex" evidence=NAS]
            [GO:0006508 "proteolysis" evidence=IMP] [GO:0005811 "lipid
            particle" evidence=IDA] [GO:0005875 "microtubule associated
            complex" evidence=IDA] [GO:0030433 "ER-associated protein catabolic
            process" evidence=IMP] [GO:0006200 "ATP catabolic process"
            evidence=IGI] [GO:0048813 "dendrite morphogenesis" evidence=IMP]
            [GO:0043523 "regulation of neuron apoptotic process" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 EMBL:AE013599 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0000226
            GO:GO:0030154 GO:GO:0005811 GO:GO:0006810 GO:GO:0006200
            GO:GO:0048477 GO:GO:0030433 GO:GO:0000502 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 GO:GO:0007030
            GO:GO:0007029 GO:GO:0016320 GO:GO:0045169 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            GeneTree:ENSGT00700000104534 GO:GO:0007317 EMBL:AF047037
            EMBL:AF202034 EMBL:AF132553 RefSeq:NP_001097249.1
            RefSeq:NP_001097250.1 RefSeq:NP_477369.1 UniGene:Dm.2968
            ProteinModelPortal:Q7KN62 SMR:Q7KN62 IntAct:Q7KN62 STRING:Q7KN62
            PaxDb:Q7KN62 PRIDE:Q7KN62 EnsemblMetazoa:FBtr0088391 GeneID:36040
            KEGG:dme:Dmel_CG2331 UCSC:CG2331-RA CTD:36040 FlyBase:FBgn0261014
            InParanoid:Q7KN62 OMA:RRGTDVN OrthoDB:EOG4TX96S GenomeRNAi:36040
            NextBio:796507 Bgee:Q7KN62 Uniprot:Q7KN62
        Length = 801

 Score = 252 (93.8 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 47/81 (58%), Positives = 59/81 (72%)

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
             V Y+DIGGC  Q  +I+E VELPL H  L+K IG+ PPRG+L+YGPPGTGKT++A+AVAN
Sbjct:   198 VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVAN 257

Query:   216 HTTAAFIRVVGSEFVQKYLGE 236
              T A F  + G E + K  GE
Sbjct:   258 ETGAFFFLINGPEIMSKLAGE 278

 Score = 226 (84.6 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 47/105 (44%), Positives = 66/105 (62%)

Query:   143 SSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
             SS S L ++  E P+ T+ DIGG +  K+E++E V+ P+ H + + + G+ P RGVL YG
Sbjct:   456 SSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYG 515

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             PPG GKT+LAKA+AN   A FI V G E +  + GE     + IF
Sbjct:   516 PPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIF 560


>GENEDB_PFALCIPARUM|PFF0940c [details] [associations]
            symbol:PFF0940c "cell division cycle protein 48
            homologue, putative" species:5833 "Plasmodium falciparum"
            [GO:0051726 "regulation of cell cycle" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
            ProteinModelPortal:C6KT34 PRIDE:C6KT34
            EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
            EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
            Uniprot:C6KT34
        Length = 828

 Score = 250 (93.1 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 50/95 (52%), Positives = 64/95 (67%)

Query:   152 EKPD-VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
             EK D + Y+DIGGC  Q  +IRE +ELPL H  L+K +G+ PPRGVLLYGPPG+GKT +A
Sbjct:   199 EKLDEIGYDDIGGCKKQLAQIREMIELPLRHPGLFKTLGVKPPRGVLLYGPPGSGKTCIA 258

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             +AVAN T A F  + G E + K  GE     ++ F
Sbjct:   259 RAVANETGAFFFLINGPEVMSKMAGEAEANLRRAF 293

 Score = 217 (81.4 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             E P+V ++DIGG D  K  +RE +  P+ H + +++ G+ P RGVL YGPPG GKT+LAK
Sbjct:   473 EVPNVKWDDIGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVLFYGPPGCGKTLLAK 532

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AVA+  +A F+ + G E +  + GE     +++F
Sbjct:   533 AVASECSANFVSIKGPELLTMWFGESEANVREVF 566


>UNIPROTKB|C6KT34 [details] [associations]
            symbol:PFF0940c "Cell division cycle protein 48 homologue,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0051726
            "regulation of cell cycle" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
            ProteinModelPortal:C6KT34 PRIDE:C6KT34
            EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
            EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
            Uniprot:C6KT34
        Length = 828

 Score = 250 (93.1 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 50/95 (52%), Positives = 64/95 (67%)

Query:   152 EKPD-VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
             EK D + Y+DIGGC  Q  +IRE +ELPL H  L+K +G+ PPRGVLLYGPPG+GKT +A
Sbjct:   199 EKLDEIGYDDIGGCKKQLAQIREMIELPLRHPGLFKTLGVKPPRGVLLYGPPGSGKTCIA 258

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             +AVAN T A F  + G E + K  GE     ++ F
Sbjct:   259 RAVANETGAFFFLINGPEVMSKMAGEAEANLRRAF 293

 Score = 217 (81.4 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             E P+V ++DIGG D  K  +RE +  P+ H + +++ G+ P RGVL YGPPG GKT+LAK
Sbjct:   473 EVPNVKWDDIGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVLFYGPPGCGKTLLAK 532

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AVA+  +A F+ + G E +  + GE     +++F
Sbjct:   533 AVASECSANFVSIKGPELLTMWFGESEANVREVF 566


>TAIR|locus:2085064 [details] [associations]
            symbol:CDC48 "cell division cycle 48" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0042802 "identical protein binding" evidence=IPI] [GO:0022626
            "cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005635 "nuclear envelope"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005819
            "spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
            [GO:0009846 "pollen germination" evidence=IMP] [GO:0009860 "pollen
            tube growth" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006486 "protein
            glycosylation" evidence=RCA] [GO:0016310 "phosphorylation"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005886 GO:GO:0009506
            GO:GO:0005524 GO:GO:0005794 GO:GO:0005618 GO:GO:0046686
            GO:GO:0005635 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC015985
            GO:GO:0005730 GO:GO:0051301 GO:GO:0005819 GO:GO:0048046
            GO:GO:0015031 GO:GO:0007049 GO:GO:0009860 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0022626 GO:GO:0009846 GO:GO:0009524 EMBL:U37587 EMBL:AY065076
            EMBL:AY094434 IPI:IPI00547533 PIR:S60112 RefSeq:NP_187595.1
            UniGene:At.21739 UniGene:At.33291 ProteinModelPortal:P54609
            SMR:P54609 IntAct:P54609 STRING:P54609 PaxDb:P54609 PRIDE:P54609
            ProMEX:P54609 EnsemblPlants:AT3G09840.1 GeneID:820142
            KEGG:ath:AT3G09840 GeneFarm:1893 TAIR:At3g09840
            HOGENOM:HOG000223224 InParanoid:P54609 KO:K13525 OMA:QIANECH
            PhylomeDB:P54609 ProtClustDB:CLSN2684913 Genevestigator:P54609
            GermOnline:AT3G09840 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            Uniprot:P54609
        Length = 809

 Score = 248 (92.4 bits), Expect = 5.5e-20, P = 5.5e-20
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             DV Y+D+GG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG+GKT++A+AVA
Sbjct:   203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 262

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   263 NETGAFFFCINGPEIMSKLAGE 284

 Score = 238 (88.8 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 53/134 (39%), Positives = 80/134 (59%)

Query:   112 TINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEI 171
             +I+ E+L   A    H H+ AL +  P     ++      E P+V++NDIGG +  K+E+
Sbjct:   439 SIDAEILNSMAVTNEHFHT-ALGNSNPSALRETVV-----EVPNVSWNDIGGLENVKREL 492

Query:   172 REAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231
             +E V+ P+ H E +++ G+ P +GVL YGPPG GKT+LAKA+AN   A FI V G E + 
Sbjct:   493 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 552

Query:   232 KYLGEVWLKHKQIF 245
              + GE     ++IF
Sbjct:   553 MWFGESEANVREIF 566


>UNIPROTKB|H9KYT1 [details] [associations]
            symbol:LOC430766 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
            PANTHER:PTHR23077:SF18 GeneTree:ENSGT00700000104534
            EMBL:AADN02071262 Ensembl:ENSGALT00000000527 OMA:NRRTHAK
            Uniprot:H9KYT1
        Length = 538

 Score = 223 (83.6 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P VT+ DIGG +  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   189 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 248

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   249 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 295

 Score = 43 (20.2 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   152 LQAIRKKMDLIDLEDETIDAEVMN 175


>UNIPROTKB|Q8NB90 [details] [associations]
            symbol:SPATA5 "Spermatogenesis-associated protein 5"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            GO:GO:0007275 GO:GO:0005739 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030154 GO:GO:0007283 HSSP:Q01853 eggNOG:COG0464
            HOGENOM:HOG000223225 KO:K14575 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 EMBL:AC021205
            EMBL:AF361489 EMBL:AF479656 EMBL:AK091384 EMBL:AC026402
            EMBL:AC097492 EMBL:AC109357 EMBL:BC048217 IPI:IPI00329583
            IPI:IPI00890715 IPI:IPI00890727 RefSeq:NP_660208.2
            UniGene:Hs.709648 ProteinModelPortal:Q8NB90 SMR:Q8NB90
            IntAct:Q8NB90 STRING:Q8NB90 PhosphoSite:Q8NB90 DMDM:308153554
            PaxDb:Q8NB90 PRIDE:Q8NB90 DNASU:166378 Ensembl:ENST00000274008
            GeneID:166378 KEGG:hsa:166378 UCSC:uc003iey.3 UCSC:uc003iez.4
            CTD:166378 GeneCards:GC04P123844 H-InvDB:HIX0022056 HGNC:HGNC:18119
            HPA:HPA036451 MIM:613940 neXtProt:NX_Q8NB90 PharmGKB:PA38294
            HOVERGEN:HBG108504 InParanoid:Q8NB90 OMA:NDIRPSA OrthoDB:EOG43FGWF
            PhylomeDB:Q8NB90 GenomeRNAi:166378 NextBio:88589 Bgee:Q8NB90
            CleanEx:HS_SPATA5 Genevestigator:Q8NB90 Uniprot:Q8NB90
        Length = 893

 Score = 247 (92.0 bits), Expect = 8.3e-20, P = 8.3e-20
 Identities = 52/97 (53%), Positives = 65/97 (67%)

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
             Q  +  VTY+ IGG   Q + IRE +ELPL   EL+K  GI  PRGVLLYGPPGTGKTM+
Sbjct:   344 QDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMI 403

Query:   210 AKAVANHTTAAFIRVV-GSEFVQKYLGEVWLKHKQIF 245
             A+AVAN    A++ V+ G E + K+ GE   K +QIF
Sbjct:   404 ARAVANEV-GAYVSVINGPEIISKFYGETEAKLRQIF 439

 Score = 233 (87.1 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 61/171 (35%), Positives = 93/171 (54%)

Query:    74 KRIQSVP--LVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK----PSASVALH 127
             K ++ VP  L   + +++ +  +G VG+          L  + R L K    P   VA  
Sbjct:   535 KLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCNEAGLCALRRILKKQPNLPDVKVA-G 593

Query:   128 RHSNALVDVLPPEADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELY 185
                  L D L    D   S + +   + P+V+++DIGG +  K ++ +AVE PL H E +
Sbjct:   594 LVKITLKDFLQAMNDIRPSAMREIAIDVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESF 653

Query:   186 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
              ++GI PP+GVLLYGPPG  KTM+AKA+AN +   F+ + G E + KY+GE
Sbjct:   654 IRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGE 704


>RGD|1310478 [details] [associations]
            symbol:Spata5 "spermatogenesis associated 5" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            RGD:1310478 GO:GO:0005524 GO:GO:0005737 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 EMBL:CH473961 SMART:SM01073
            CTD:166378 OrthoDB:EOG43FGWF EMBL:AC116183 IPI:IPI00373191
            RefSeq:NP_001102019.1 UniGene:Rn.116828 Ensembl:ENSRNOT00000023584
            GeneID:361935 KEGG:rno:361935 UCSC:RGD:1310478 NextBio:678104
            Uniprot:D4A6T1
        Length = 838

 Score = 246 (91.7 bits), Expect = 9.5e-20, P = 9.5e-20
 Identities = 76/247 (30%), Positives = 123/247 (49%)

Query:     9 DPKPVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQ----KNLK- 63
             D   + +P  S+ +D+    S++  + S    +  QL  +D++E      Q    K +  
Sbjct:   198 DGTTLGKPQSSSGTDVHGMASEQSSMESSDVDISFQLSQLDLKEPQSPASQSTPCKPIND 257

Query:    64 RELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSAS 123
             R + +A E +  +   P   G  + + ++  G+  S   S         I+ E L  S S
Sbjct:   258 RTMNKAGEVLLDVTQSPRD-GSGLGL-EEITGLKCSFDSSKE--GNTQPISEEKLLKSTS 313

Query:   124 VALHRHSNALVDVLPPEADSSISLLSQSEKPD----VTYNDIGGCDIQKQEIREAVELPL 179
                  +++    +      +   + + S++ D    VTY+ IGG + Q + IRE +ELPL
Sbjct:   314 AGAKNNTDTFYFISSTTRINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPL 373

Query:   180 THHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GSEFVQKYLGEVW 238
                EL+K  GI  PRG+LLYGPPGTGKTM+A+AVAN    A++ V+ G E + K+ GE  
Sbjct:   374 KQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEV-GAYVSVINGPEIISKFYGETE 432

Query:   239 LKHKQIF 245
              + +QIF
Sbjct:   433 ARLRQIF 439

 Score = 236 (88.1 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 61/180 (33%), Positives = 99/180 (55%)

Query:    74 KRIQSVP--LVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK----PSASVALH 127
             K ++ VP  L   + + + +  +G VG+   +      L  + R L K    P + VA  
Sbjct:   535 KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLYALRRVLRKQPNLPDSKVA-G 593

Query:   128 RHSNALVDVLPPEADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELY 185
                  L D L    D   S + +   + P+V+++DIGG +  K ++++AVE PL H + +
Sbjct:   594 MVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSF 653

Query:   186 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              ++GI PP+GVLLYGPPG  KTM+AKA+AN +   F+ + G E + KY+GE     +++F
Sbjct:   654 SRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREVF 713


>WB|WBGene00007352 [details] [associations]
            symbol:cdc-48.1 species:6239 "Caenorhabditis elegans"
            [GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
            helicase activity" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040002
            "collagen and cuticulin-based cuticle development" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
            "meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
            protein response" evidence=IMP] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IGI] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0002119
            GO:GO:0040011 GO:GO:0040018 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 GO:GO:0040002
            HOGENOM:HOG000223224 KO:K13525 OMA:QIANECH InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0034098 GeneTree:ENSGT00700000104534
            GO:GO:0071712 EMBL:Z49886 PIR:T18970 RefSeq:NP_496273.1
            ProteinModelPortal:P54811 SMR:P54811 DIP:DIP-26650N IntAct:P54811
            MINT:MINT-1061999 STRING:P54811 PaxDb:P54811 PRIDE:P54811
            EnsemblMetazoa:C06A1.1.1 EnsemblMetazoa:C06A1.1.2 GeneID:174624
            KEGG:cel:CELE_C06A1.1 UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1
            InParanoid:P54811 NextBio:884814 Uniprot:P54811
        Length = 809

 Score = 241 (89.9 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             D+ Y+D+GG   Q  +I+E VELPL H +L+K IGI PPRG+LL+GPPGTGKT++A+AVA
Sbjct:   206 DIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVA 265

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T + F  + G E + K  GE
Sbjct:   266 NETGSFFFLINGPEVMSKMSGE 287

 Score = 231 (86.4 bits), Expect = 9.6e-20, Sum P(2) = 9.6e-20
 Identities = 47/108 (43%), Positives = 67/108 (62%)

Query:   140 EADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVL 197
             +  SS S L ++  E P+ T++DIGG    K+E++E V+ P+ H E Y + G+ P RGVL
Sbjct:   462 QGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVL 521

Query:   198 LYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              YGPPG GKT+LAKA+AN   A FI + G E +  + GE     + +F
Sbjct:   522 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVF 569

 Score = 40 (19.1 bits), Expect = 9.6e-20, Sum P(2) = 9.6e-20
 Identities = 6/24 (25%), Positives = 16/24 (66%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L+ ++ ++E ID++++ +  E  N
Sbjct:   426 LQQIREKMELIDLEDDQIDAEVLN 449


>UNIPROTKB|P54811 [details] [associations]
            symbol:cdc-48.1 "Transitional endoplasmic reticulum ATPase
            homolog 1" species:6239 "Caenorhabditis elegans" [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
            GO:GO:0007126 GO:GO:0002119 GO:GO:0040011 GO:GO:0040018
            GO:GO:0016887 GO:GO:0000910 eggNOG:COG0464 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0030968 GO:GO:0040002 HOGENOM:HOG000223224 KO:K13525
            OMA:QIANECH InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z49886 PIR:T18970
            RefSeq:NP_496273.1 ProteinModelPortal:P54811 SMR:P54811
            DIP:DIP-26650N IntAct:P54811 MINT:MINT-1061999 STRING:P54811
            PaxDb:P54811 PRIDE:P54811 EnsemblMetazoa:C06A1.1.1
            EnsemblMetazoa:C06A1.1.2 GeneID:174624 KEGG:cel:CELE_C06A1.1
            UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1 InParanoid:P54811
            NextBio:884814 Uniprot:P54811
        Length = 809

 Score = 241 (89.9 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             D+ Y+D+GG   Q  +I+E VELPL H +L+K IGI PPRG+LL+GPPGTGKT++A+AVA
Sbjct:   206 DIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVA 265

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T + F  + G E + K  GE
Sbjct:   266 NETGSFFFLINGPEVMSKMSGE 287

 Score = 231 (86.4 bits), Expect = 9.6e-20, Sum P(2) = 9.6e-20
 Identities = 47/108 (43%), Positives = 67/108 (62%)

Query:   140 EADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVL 197
             +  SS S L ++  E P+ T++DIGG    K+E++E V+ P+ H E Y + G+ P RGVL
Sbjct:   462 QGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVL 521

Query:   198 LYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              YGPPG GKT+LAKA+AN   A FI + G E +  + GE     + +F
Sbjct:   522 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVF 569

 Score = 40 (19.1 bits), Expect = 9.6e-20, Sum P(2) = 9.6e-20
 Identities = 6/24 (25%), Positives = 16/24 (66%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L+ ++ ++E ID++++ +  E  N
Sbjct:   426 LQQIREKMELIDLEDDQIDAEVLN 449


>DICTYBASE|DDB_G0288065 [details] [associations]
            symbol:cdcD "CDC48 family AAA ATPase" species:44689
            "Dictyostelium discoideum" [GO:0005615 "extracellular space"
            evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
            [GO:0009617 "response to bacterium" evidence=IEP] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0007049 "cell
            cycle" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
            [GO:0051301 "cell division" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            dictyBase:DDB_G0288065 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005615 GO:GO:0045335 GO:GO:0009617 GO:GO:0051301
            GenomeReviews:CM000154_GR GO:GO:0016887 GO:GO:0007049 GO:GO:0030433
            HSSP:Q01853 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 EMBL:AAFI02000109 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            ProtClustDB:CLSZ2429060 EMBL:U83085 RefSeq:XP_636910.1
            ProteinModelPortal:P90532 SMR:P90532 STRING:P90532 PRIDE:P90532
            EnsemblProtists:DDB0191154 GeneID:8626465 KEGG:ddi:DDB_G0288065
            InParanoid:P90532 Uniprot:P90532
        Length = 793

 Score = 245 (91.3 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 47/82 (57%), Positives = 59/82 (71%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG GKTM+A+AVA
Sbjct:   198 EVGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVA 257

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   258 NETGAFFFLINGPEIMSKLAGE 279

 Score = 231 (86.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 52/134 (38%), Positives = 76/134 (56%)

Query:   112 TINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEI 171
             TI+ E+L+ S SV       AL    P     ++      E P  T+ DIGG +  K+E+
Sbjct:   434 TISAEILE-SMSVTQDHFRTALTLSNPSALRETVV-----EVPTTTWEDIGGLEGVKREL 487

Query:   172 REAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231
             RE V+ P+ H E +++ G+ P +GVL YGPPG GKT+LAKA+AN   A FI + G E + 
Sbjct:   488 RETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 547

Query:   232 KYLGEVWLKHKQIF 245
              + GE     +++F
Sbjct:   548 MWFGESEANVRELF 561

 Score = 39 (18.8 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 6/23 (26%), Positives = 16/23 (69%)

Query:    36 SRLKSLQRQLEFIDIQEEYVKDE 58
             S L+ ++ +++ ID+++E +  E
Sbjct:   416 SALQCIREKMDVIDLEDETISAE 438


>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
            symbol:vcp "valosin containing protein"
            species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
            damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
            ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
            break" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:2000058 "regulation of protein ubiquitination involved in
            ubiquitin-dependent protein catabolic process" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
            ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
            GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
            EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
            IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
            ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
            Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
            InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
        Length = 806

 Score = 245 (91.3 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 47/82 (57%), Positives = 59/82 (71%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+DIGG   Q  +I+E VELPL H  L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct:   200 EVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   260 NETGAFFFLINGPEIMSKLAGE 281

 Score = 227 (85.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 45/107 (42%), Positives = 69/107 (64%)

Query:   141 ADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             + S+ S L ++  E P++T+ DIGG D  K+E++E V+ P+ H + + + G+ P +GVL 
Sbjct:   457 SQSNPSALRETVVEVPNITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             YGPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563

 Score = 43 (20.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 6/24 (25%), Positives = 18/24 (75%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             L++++++++ ID+++E +  E  N
Sbjct:   420 LQAIRKKMDLIDLEDETIDAEVMN 443


>MGI|MGI:1927170 [details] [associations]
            symbol:Spata5 "spermatogenesis associated 5" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 MGI:MGI:1927170 GO:GO:0007275
            GO:GO:0005739 GO:GO:0005524 GO:GO:0030154 GO:GO:0007283
            eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 HSSP:Q9WZ49
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073
            CTD:166378 HOVERGEN:HBG108504 OMA:NDIRPSA OrthoDB:EOG43FGWF
            EMBL:AF049099 EMBL:AK011111 EMBL:AK144998 EMBL:AL669927
            EMBL:AL627074 EMBL:AL645968 IPI:IPI00649667 RefSeq:NP_001156983.1
            RefSeq:NP_067318.2 UniGene:Mm.172679 ProteinModelPortal:Q3UMC0
            SMR:Q3UMC0 PhosphoSite:Q3UMC0 PaxDb:Q3UMC0 PRIDE:Q3UMC0
            Ensembl:ENSMUST00000029277 Ensembl:ENSMUST00000108112 GeneID:57815
            KEGG:mmu:57815 UCSC:uc008pau.2 InParanoid:Q3UMC0 NextBio:314006
            Bgee:Q3UMC0 Genevestigator:Q3UMC0 Uniprot:Q3UMC0
        Length = 893

 Score = 245 (91.3 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 57/135 (42%), Positives = 82/135 (60%)

Query:   116 ELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD----VTYNDIGGCDIQKQEI 171
             +LLKP AS     +++    +      +   + + S++ D    VTY+ IGG + Q + I
Sbjct:   307 KLLKP-ASAGTKSNTDTFYFISSTTRINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAI 365

Query:   172 REAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV-GSEFV 230
             RE +ELPL   EL+K  GI  PRG+LLYGPPGTGKTM+A+AVAN    A++ V+ G E +
Sbjct:   366 REIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEV-GAYVSVINGPEII 424

Query:   231 QKYLGEVWLKHKQIF 245
              K+ GE   + +QIF
Sbjct:   425 SKFYGETEARLRQIF 439

 Score = 238 (88.8 bits), Expect = 7.6e-19, P = 7.6e-19
 Identities = 62/180 (34%), Positives = 99/180 (55%)

Query:    74 KRIQSVP--LVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK----PSASVALH 127
             K ++ VP  L   + + + +  +G VG+   +      L  + R L K    P + VA  
Sbjct:   535 KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRKQPNLPDSKVA-G 593

Query:   128 RHSNALVDVLPPEADSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELY 185
                  L D L    D   S + +   + P+V+++DIGG +  K ++++AVE PL H + +
Sbjct:   594 MVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSF 653

Query:   186 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              ++GI PP+GVLLYGPPG  KTM+AKA+AN +   F+ + G E + KY+GE     ++IF
Sbjct:   654 NRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIF 713


>TAIR|locus:2831844 [details] [associations]
            symbol:AtCDC48C "cell division cycle 48C" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            EMBL:AL162751 GO:GO:0051301 GO:GO:0005856 GO:GO:0015031
            GO:GO:0007049 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0009524 UniGene:At.33291 HOGENOM:HOG000223224
            KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AK117125 EMBL:AK118571 EMBL:BT006485
            IPI:IPI00543476 RefSeq:NP_568114.1 ProteinModelPortal:Q9LZF6
            SMR:Q9LZF6 IntAct:Q9LZF6 STRING:Q9LZF6 PRIDE:Q9LZF6
            EnsemblPlants:AT5G03340.1 GeneID:831870 KEGG:ath:AT5G03340
            GeneFarm:1899 TAIR:At5g03340 InParanoid:Q9LZF6 OMA:AYRPIHK
            PhylomeDB:Q9LZF6 Genevestigator:Q9LZF6 GermOnline:AT5G03340
            Uniprot:Q9LZF6
        Length = 810

 Score = 244 (91.0 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+D+GG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG+GKT++A+AVA
Sbjct:   203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 262

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   263 NETGAFFFCINGPEIMSKLAGE 284

 Score = 230 (86.0 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 52/134 (38%), Positives = 79/134 (58%)

Query:   112 TINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEI 171
             +I+ E+L   A    H H+ AL +  P     ++      E P+V++ DIGG +  K+E+
Sbjct:   439 SIDAEILNSMAVSNEHFHT-ALGNSNPSALRETVV-----EVPNVSWEDIGGLENVKREL 492

Query:   172 REAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231
             +E V+ P+ H E +++ G+ P +GVL YGPPG GKT+LAKA+AN   A FI V G E + 
Sbjct:   493 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 552

Query:   232 KYLGEVWLKHKQIF 245
              + GE     ++IF
Sbjct:   553 MWFGESEANVREIF 566


>TAIR|locus:2101933 [details] [associations]
            symbol:AtCDC48B "AT3G53230" species:3702 "Arabidopsis
            thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0045732 "positive
            regulation of protein catabolic process" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005794 GO:GO:0046686 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005654 GO:GO:0005730 GO:GO:0051301
            GO:GO:0005856 GO:GO:0015031 GO:GO:0007049 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0045732 GO:GO:0009524 EMBL:AL132958 HOGENOM:HOG000223224
            KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AK228801 IPI:IPI00520856 PIR:T46169
            RefSeq:NP_190891.1 UniGene:At.23168 ProteinModelPortal:Q9SCN8
            SMR:Q9SCN8 STRING:Q9SCN8 PaxDb:Q9SCN8 PRIDE:Q9SCN8
            EnsemblPlants:AT3G53230.1 GeneID:824489 KEGG:ath:AT3G53230
            GeneFarm:1909 TAIR:At3g53230 InParanoid:Q9SCN8 OMA:DIRRYEE
            PhylomeDB:Q9SCN8 Genevestigator:Q9SCN8 GermOnline:AT3G53230
            Uniprot:Q9SCN8
        Length = 815

 Score = 244 (91.0 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+D+GG   Q  +IRE VELPL H +L+K IG+ PP+G+LLYGPPG+GKT++A+AVA
Sbjct:   204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   264 NETGAFFFCINGPEIMSKLAGE 285

 Score = 228 (85.3 bits), Expect = 7.7e-18, P = 7.7e-18
 Identities = 45/106 (42%), Positives = 70/106 (66%)

Query:   142 DSSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 199
             +S+ S L ++  E P+V++ DIGG +  K+E++E V+ P+ H E +++ G+ P +GVL Y
Sbjct:   462 NSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFY 521

Query:   200 GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             GPPG GKT+LAKA+AN   A FI + G E +  + GE     ++IF
Sbjct:   522 GPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 567


>POMBASE|SPBC56F2.07c [details] [associations]
            symbol:SPBC56F2.07c "ribosome biogenesis factor
            recycling AAA family ATPase (predicted)" species:4896
            "Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0016887 "ATPase activity"
            evidence=ISM] [GO:0042273 "ribosomal large subunit biogenesis"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPBC56F2.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329671
            GenomeReviews:CU329671_GR GO:GO:0016887 PIR:T40537
            RefSeq:NP_596710.1 HSSP:Q01853 ProteinModelPortal:O60058
            PRIDE:O60058 EnsemblFungi:SPBC56F2.07c.1 GeneID:2540537
            KEGG:spo:SPBC56F2.07c eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
            OMA:SSENMAT OrthoDB:EOG49CTH0 NextBio:20801663 GO:GO:0042273
            Uniprot:O60058
        Length = 809

 Score = 242 (90.2 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 46/94 (48%), Positives = 65/94 (69%)

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             E P+V ++DIGG +  KQ+++E+VE PLTH E + ++G+ PP+GVLLYGPPG  KT+ AK
Sbjct:   541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAK 600

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A+A  T   FI V G E   K++GE     +Q+F
Sbjct:   601 AIATETGLNFIAVKGPELFDKFVGESERAVRQVF 634

 Score = 222 (83.2 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 46/90 (51%), Positives = 58/90 (64%)

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
             VT++ IGG   Q  +IR+ VELP  + EL+K   I PPRGVLLYGPPGTGKTM+ +AVA 
Sbjct:   276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA 335

Query:   216 HTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
                A    + G   V KYLGE   + ++IF
Sbjct:   336 EANAQVFTIDGPSVVGKYLGETESRLRKIF 365


>WB|WBGene00008053 [details] [associations]
            symbol:cdc-48.2 species:6239 "Caenorhabditis elegans"
            [GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
            helicase activity" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
            "meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
            protein response" evidence=IMP] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IGI] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
            RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
            DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
            PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
            EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
            KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
            InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
        Length = 810

 Score = 241 (89.9 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+D+GG   Q  +I+E VELPL H +L+K IG+ PPRG+LL+GPPGTGKT++A+AVA
Sbjct:   205 EVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVA 264

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   265 NETGAFFFLINGPEIMSKMSGE 286

 Score = 230 (86.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
 Identities = 47/105 (44%), Positives = 66/105 (62%)

Query:   143 SSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
             SS S L ++  E P+ T++DIGG    K+E++E V+ P+ H E Y + G+ P RGVL YG
Sbjct:   464 SSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYG 523

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             PPG GKT+LAKA+AN   A FI + G E +  + GE     + +F
Sbjct:   524 PPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVF 568

 Score = 37 (18.1 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
 Identities = 5/24 (20%), Positives = 16/24 (66%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             ++ ++ ++E ID++++ +  E  N
Sbjct:   425 IQQIREKMELIDLEDDTIDAEVLN 448


>UNIPROTKB|P54812 [details] [associations]
            symbol:cdc-48.2 "Transitional endoplasmic reticulum ATPase
            homolog 2" species:6239 "Caenorhabditis elegans" [GO:0042802
            "identical protein binding" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
            RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
            DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
            PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
            EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
            KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
            InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
        Length = 810

 Score = 241 (89.9 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V Y+D+GG   Q  +I+E VELPL H +L+K IG+ PPRG+LL+GPPGTGKT++A+AVA
Sbjct:   205 EVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVA 264

Query:   215 NHTTAAFIRVVGSEFVQKYLGE 236
             N T A F  + G E + K  GE
Sbjct:   265 NETGAFFFLINGPEIMSKMSGE 286

 Score = 230 (86.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
 Identities = 47/105 (44%), Positives = 66/105 (62%)

Query:   143 SSISLLSQS--EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG 200
             SS S L ++  E P+ T++DIGG    K+E++E V+ P+ H E Y + G+ P RGVL YG
Sbjct:   464 SSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYG 523

Query:   201 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             PPG GKT+LAKA+AN   A FI + G E +  + GE     + +F
Sbjct:   524 PPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVF 568

 Score = 37 (18.1 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
 Identities = 5/24 (20%), Positives = 16/24 (66%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKN 61
             ++ ++ ++E ID++++ +  E  N
Sbjct:   425 IQQIREKMELIDLEDDTIDAEVLN 448


>UNIPROTKB|O50202 [details] [associations]
            symbol:arc "Proteasome-associated ATPase" species:1833
            "Rhodococcus erythropolis" [GO:0000502 "proteasome complex"
            evidence=IGC] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGC] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0022623 "proteasome-activating nucleotidase complex"
            evidence=IGC] [GO:0043273 "CTPase activity" evidence=IDA]
            HAMAP:MF_02112 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR022482 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0016887 GO:GO:0010498
            UniPathway:UPA00997 GO:GO:0022623 GO:GO:0019941
            PANTHER:PTHR23073:SF4 TIGRFAMs:TIGR03689 EMBL:AF088800 PDB:2WFW
            PDBsum:2WFW ProteinModelPortal:O50202 EvolutionaryTrace:O50202
            GO:GO:0043273 Uniprot:O50202
        Length = 591

 Score = 219 (82.2 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
 Identities = 52/143 (36%), Positives = 78/143 (54%)

Query:   118 LKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVEL 177
             L+P  S+ +   +    + +P    + +  L   E PDV Y+DIGG   Q ++IR+AVEL
Sbjct:   196 LRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVHYDDIGGLGRQIEQIRDAVEL 252

Query:   178 PLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT---------------AAFI 222
             P  H +L+ +  + PP+GVLLYGPPG GKT++AKAVAN                  + F+
Sbjct:   253 PFLHKDLFHEYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKIAEARGQDSKDAKSYFL 312

Query:   223 RVVGSEFVQKYLGEVWLKHKQIF 245
              + G E + K++GE     + IF
Sbjct:   313 NIKGPELLNKFVGETERHIRMIF 335

 Score = 40 (19.1 bits), Expect = 6.1e-19, Sum P(2) = 6.1e-19
 Identities = 7/21 (33%), Positives = 16/21 (76%)

Query:    58 EQKNLKRELLRAQEEVKRIQS 78
             E + L+R+L ++ E+V+ ++S
Sbjct:    22 EAQVLRRQLAQSPEQVRELES 42


>SGD|S000003957 [details] [associations]
            symbol:RIX7 "Putative ATPase of the AAA family" species:4932
            "Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0000055 "ribosomal large subunit
            export from nucleus" evidence=IMP] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0042273 "ribosomal large
            subunit biogenesis" evidence=IGI;IMP] [GO:0030687 "preribosome,
            large subunit precursor" evidence=IDA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003957
            GO:GO:0005524 GO:GO:0005730 EMBL:BK006945 GO:GO:0016887
            eggNOG:COG0464 HOGENOM:HOG000223225 GO:GO:0042273 GO:GO:0030687
            GO:GO:0000055 KO:K14571 OMA:NDMTLKE GeneTree:ENSGT00570000079239
            EMBL:Z73139 PIR:S64785 RefSeq:NP_013066.1 ProteinModelPortal:Q07844
            SMR:Q07844 DIP:DIP-6385N IntAct:Q07844 MINT:MINT-621241
            STRING:Q07844 PaxDb:Q07844 PeptideAtlas:Q07844 EnsemblFungi:YLL034C
            GeneID:850625 KEGG:sce:YLL034C CYGD:YLL034c OrthoDB:EOG40GH00
            NextBio:966532 Genevestigator:Q07844 GermOnline:YLL034C
            Uniprot:Q07844
        Length = 837

 Score = 222 (83.2 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             PDVT+ ++G     + E+  A+  P+   ELY+++GI  P GVLL+GPPG GKT+LAKAV
Sbjct:   528 PDVTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAV 587

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AN + A FI + G E + KY+GE     +Q+F
Sbjct:   588 ANESRANFISIKGPELLNKYVGESERSIRQVF 619

 Score = 175 (66.7 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 34/92 (36%), Positives = 51/92 (55%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P+ +   +GG D    ++ E + LP+ H E++   G++PPRGVLL+GPPG GKT +A A+
Sbjct:   200 PNSSLKSLGGMDDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANAL 259

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A      FI +     V    GE   K + +F
Sbjct:   260 AGELQVPFISISAPSVVSGMSGESEKKIRDLF 291

 Score = 37 (18.1 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query:    13 VSEPPPSTRSDLT-EQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLR 68
             +S   PS  S ++ E      DL+   +SL   L F D  +          +RE+ R
Sbjct:   268 ISISAPSVVSGMSGESEKKIRDLFDEARSLAPCLVFFDEIDAITPKRDGGAQREMER 324

 Score = 36 (17.7 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query:    51 QEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 90
             +E   K +++ +K +       +K +  +  V+ Q ME++
Sbjct:   182 KEGTCKVKRQKIKEDRSPPNSSLKSLGGMDDVVAQLMELI 221


>UNIPROTKB|P63345 [details] [associations]
            symbol:mpa "Proteasome-associated ATPase" species:1773
            "Mycobacterium tuberculosis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009405 "pathogenesis"
            evidence=IMP] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IDA;IMP] [GO:0010499 "proteasomal ubiquitin-independent
            protein catabolic process" evidence=IDA] [GO:0016887 "ATPase
            activity" evidence=IDA] [GO:0019941 "modification-dependent protein
            catabolic process" evidence=IDA;IMP] [GO:0022623
            "proteasome-activating nucleotidase complex" evidence=IDA]
            [GO:0032182 "small conjugating protein binding" evidence=IDA;IPI]
            [GO:0043335 "protein unfolding" evidence=IDA] [GO:0051260 "protein
            homooligomerization" evidence=IPI] [GO:0051409 "response to
            nitrosative stress" evidence=IMP] [GO:0070628 "proteasome binding"
            evidence=IPI] [GO:0071732 "cellular response to nitric oxide"
            evidence=IMP] HAMAP:MF_02112 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR022482 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005886 GO:GO:0005524 GO:GO:0005618
            GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0051260 EMBL:BX842578 GO:GO:0016887
            GO:GO:0071732 GO:GO:0051409 eggNOG:COG0464 EMBL:DQ888314 PIR:F70512
            RefSeq:NP_216631.1 RefSeq:NP_336644.1 RefSeq:YP_006515531.1
            PDB:3FP9 PDB:3M91 PDB:3M9B PDB:3M9D PDB:3M9H PDBsum:3FP9
            PDBsum:3M91 PDBsum:3M9B PDBsum:3M9D PDBsum:3M9H
            ProteinModelPortal:P63345 SMR:P63345 DIP:DIP-48292N
            MINT:MINT-7262409 PRIDE:P63345 EnsemblBacteria:EBMYCT00000003259
            EnsemblBacteria:EBMYCT00000070852 GeneID:13316922 GeneID:887297
            GeneID:923659 KEGG:mtc:MT2175 KEGG:mtu:Rv2115c KEGG:mtv:RVBD_2115c
            PATRIC:18126540 TubercuList:Rv2115c HOGENOM:HOG000245286 KO:K13527
            OMA:VFFDEME ProtClustDB:CLSK872012 UniPathway:UPA00997
            EvolutionaryTrace:P63345 GO:GO:0022623 GO:GO:0032182 GO:GO:0019941
            GO:GO:0010499 GO:GO:0043335 PANTHER:PTHR23073:SF4
            TIGRFAMs:TIGR03689 Uniprot:P63345
        Length = 609

 Score = 231 (86.4 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 48/111 (43%), Positives = 67/111 (60%)

Query:   118 LKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVEL 177
             L+P  S+ +   +    + +P    + +  L   E PDV+Y DIGG   Q ++IR+AVEL
Sbjct:   214 LRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVSYADIGGLSRQIEQIRDAVEL 270

Query:   178 PLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228
             P  H ELY++  + PP+GVLLYGPPG GKT++AKAVAN        V G +
Sbjct:   271 PFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDD 321


>UNIPROTKB|E1BT72 [details] [associations]
            symbol:NVL "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016235 "aggresome" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
            GO:GO:0016235 GO:GO:0017111 OMA:NDMTLKE
            GeneTree:ENSGT00570000079239 EMBL:AADN02012163 IPI:IPI00584236
            Ensembl:ENSGALT00000015173 ArrayExpress:E1BT72 Uniprot:E1BT72
        Length = 858

 Score = 206 (77.6 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
 Identities = 42/92 (45%), Positives = 59/92 (64%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             PDVT+ DIG  +  ++E+  A+  P+ + E +K +G+  P GVLL GPPG GKT+LAKAV
Sbjct:   576 PDVTWADIGALEDVREELTMAILAPVRNPEQFKALGLTTPAGVLLAGPPGCGKTLLAKAV 635

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AN +   FI V G E +  Y+GE     +Q+F
Sbjct:   636 ANESGLNFISVKGPELLNMYVGESERAVRQVF 667

 Score = 179 (68.1 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 36/92 (39%), Positives = 56/92 (60%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V + D+GG D   +EI + + + + H E+Y  +G+ PPRG LL+GPPG GKT+LA+A+
Sbjct:   255 PSVKFEDVGGNDETLKEICKML-IHVRHPEVYLHLGVVPPRGFLLHGPPGCGKTLLAQAI 313

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A       ++V  +E V    GE   K +++F
Sbjct:   314 AGELELPMLKVAATEMVSGVSGESEQKLRELF 345

 Score = 48 (22.0 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query:    23 DLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKR--ELLRAQEEVKRI 76
             DL+E    ++    +L S Q+  EF  ++ E  K + K  KR  E     EE++ I
Sbjct:   187 DLSEDGEGDE---KKLISEQKSTEFSVLESEKKKTKGKRAKRKKEFPDVDEEIESI 239


>ASPGD|ASPL0000062283 [details] [associations]
            symbol:AN1366 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            EMBL:BN001308 HOGENOM:HOG000223225 GO:GO:0017111 OMA:REGFTTI
            EnsemblFungi:CADANIAT00001245 Uniprot:C8VRW3
        Length = 729

 Score = 227 (85.0 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 46/92 (50%), Positives = 59/92 (64%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             PD T+ DIG     + E+  A+  P+ H ELY  +GI  P GVLL+GPPG GKT+LAKAV
Sbjct:   464 PDTTWADIGALSGIRDELATAIVDPIKHPELYASVGITAPTGVLLWGPPGCGKTLLAKAV 523

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AN + A FI V G E + KY+GE     +Q+F
Sbjct:   524 ANESRANFISVKGPELLNKYVGESERAVRQVF 555

 Score = 169 (64.5 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 45/149 (30%), Positives = 70/149 (46%)

Query:    88 EMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISL 147
             E    N  +VG+   ++   +  S  N E   P+ +    RH     +    +   + + 
Sbjct:    98 ESNSMNKSLVGAWNTASKAPK--SESNAENGTPAPTTTKKRHHGG--ESHSSKRRKAENA 153

Query:   148 LSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT 207
             + +S    V+  D+GG D   Q++ + V LP+T  ++Y    + PPRGVLL+GPPG GKT
Sbjct:   154 VDRSPPTHVSLADLGGLDDVVQQLGDLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKT 213

Query:   208 MLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             M+A A A      FI +     V    GE
Sbjct:   214 MIANAFAAELGVPFISISAPSIVSGMSGE 242


>FB|FBgn0016983 [details] [associations]
            symbol:smid "smallminded" species:7227 "Drosophila
            melanogaster" [GO:0016887 "ATPase activity" evidence=ISS;NAS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0022008 "neurogenesis"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:AE014296 GO:GO:0022008 GO:GO:0016887 HSSP:Q01853
            KO:K14571 GeneTree:ENSGT00570000079239 UniGene:Dm.875 GeneID:38824
            KEGG:dme:Dmel_CG8571 CTD:38824 FlyBase:FBgn0016983 GenomeRNAi:38824
            NextBio:810567 RefSeq:NP_523959.2 ProteinModelPortal:Q9VS62
            SMR:Q9VS62 IntAct:Q9VS62 MINT:MINT-754496 STRING:Q9VS62
            PRIDE:Q9VS62 EnsemblMetazoa:FBtr0076851 UCSC:CG8571-RA
            InParanoid:Q9VS62 OMA:EFDSLCP PhylomeDB:Q9VS62 ArrayExpress:Q9VS62
            Bgee:Q9VS62 Uniprot:Q9VS62
        Length = 944

 Score = 208 (78.3 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 57/189 (30%), Positives = 94/189 (49%)

Query:    55 VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTIN 114
             +K  QK  K+   +  +    + +V     +  + V+Q   +  S++   YY   L+ + 
Sbjct:   560 IKSPQKTPKKSAEKPTDAAMDVDNV--APEEPKKAVEQE--VDSSSSNDEYYEPTLAELT 615

Query:   115 RELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK-------PDVTYNDIGGCDIQ 167
               L  P    A       L+D +      +I ++  S K       PD T++DIG  +  
Sbjct:   616 NFLDNPPEEFADPNFCLTLIDFV-----DAIKVMQPSAKREGFITVPDTTWDDIGALEKI 670

Query:   168 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227
             ++E++ AV  P+ + E+ +++G+  P GVLL GPPG GKT+LAKA+AN     FI V G 
Sbjct:   671 REELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGP 730

Query:   228 EFVQKYLGE 236
             E +  Y+GE
Sbjct:   731 ELMNMYVGE 739

 Score = 152 (58.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 31/94 (32%), Positives = 54/94 (57%)

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             + P  ++ DIGG D   +E+ E + + +   E Y Q+G+ P RG+LL+GPPG GKT LA+
Sbjct:   244 QHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLAR 302

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A++       + +  +E +    GE   + +++F
Sbjct:   303 AISGQLKMPLMEIPATELIGGISGESEERIREVF 336

 Score = 43 (20.2 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query:     8 LDPKPVSEPPPSTRSDLTEQWSD 30
             L PKP+SEP   +  D  E  S+
Sbjct:   110 LAPKPISEPIDISSGDENEDDSN 132


>CGD|CAL0002187 [details] [associations]
            symbol:orf19.6432 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0042493 "response to drug"
            evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            CGD:CAL0002187 GO:GO:0005524 EMBL:AACQ01000073 EMBL:AACQ01000072
            eggNOG:COG0464 KO:K14575 GO:GO:0017111 InterPro:IPR009010
            SUPFAM:SSF50692 SMART:SM01073 RefSeq:XP_716187.1 RefSeq:XP_716270.1
            ProteinModelPortal:Q5A331 GeneID:3642106 GeneID:3642160
            KEGG:cal:CaO19.13790 KEGG:cal:CaO19.6432 Uniprot:Q5A331
        Length = 766

 Score = 223 (83.6 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 55/183 (30%), Positives = 92/183 (50%)

Query:    63 KRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSA 122
             + E+L  Q      +   +   +   +  + +G VG+   +     ++  INR L     
Sbjct:   404 REEILTKQFAKMNSEKCQITKEEIASIASKTHGYVGADLTALCRESVMKAINRGLTVGIP 463

Query:   123 SVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHH 182
               A+    + +   LP    S++  +   E P V ++DIGG +  K+++ E V+LPL   
Sbjct:   464 QTAIKVTVDDVYHALPEIRPSAMREIFL-EMPKVHWSDIGGQEELKRKLIEVVQLPLEAS 522

Query:   183 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHK 242
             + +K +G+  P+GVLLYGPPG  KT+ AKA+A  +   F+ V G E   KY+GE     +
Sbjct:   523 DSFKNLGVSSPKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERAIR 582

Query:   243 QIF 245
             +IF
Sbjct:   583 EIF 585

 Score = 217 (81.4 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 42/91 (46%), Positives = 57/91 (62%)

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
             +TY+ +GG   Q + ++  +ELPL +  L+   GI PPRG+LL+GPPGTGKTML + VAN
Sbjct:   226 ITYDQVGGLSKQIELLKSTIELPLNNPTLFSDFGISPPRGILLHGPPGTGKTMLLRCVAN 285

Query:   216 HTTAAFIRVV-GSEFVQKYLGEVWLKHKQIF 245
               T A +  + G   V KYLGE     + IF
Sbjct:   286 SITEAHVLTINGPSIVSKYLGETENAIRDIF 316


>SGD|S000004389 [details] [associations]
            symbol:AFG2 "ATPase of the CDC48/PAS1/SEC18 (AAA) family,
            forms a hexameric complex" species:4932 "Saccharomyces cerevisiae"
            [GO:0030687 "preribosome, large subunit precursor"
            evidence=IDA;IMP] [GO:0042493 "response to drug" evidence=IMP]
            [GO:0005622 "intracellular" evidence=IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0042273 "ribosomal
            large subunit biogenesis" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000004389 GO:GO:0005524 GO:GO:0042493
            EMBL:BK006945 GO:GO:0016887 eggNOG:COG0464 HOGENOM:HOG000223225
            KO:K14575 OrthoDB:EOG49CTH0 GO:GO:0042273 EMBL:L14615 EMBL:U19729
            EMBL:AY693116 PIR:S39110 RefSeq:NP_013501.1
            ProteinModelPortal:P32794 SMR:P32794 DIP:DIP-4470N IntAct:P32794
            MINT:MINT-566202 STRING:P32794 PaxDb:P32794 PeptideAtlas:P32794
            EnsemblFungi:YLR397C GeneID:851113 KEGG:sce:YLR397C CYGD:YLR397c
            GeneTree:ENSGT00700000104502 OMA:MLLRCVA NextBio:967827
            Genevestigator:P32794 GermOnline:YLR397C GO:GO:0030687
            Uniprot:P32794
        Length = 780

 Score = 223 (83.6 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 59/163 (36%), Positives = 88/163 (53%)

Query:    89 MVDQNNGIVGSTTGSNYYVRILSTINRELL------KPSASVALHRHSNALVDVLPPEAD 142
             +  + +G VG+   +     ++ TI R L       K S  V L    +A+VD+ P  A 
Sbjct:   445 IASKTHGYVGADLTALCRESVMKTIQRGLGTDANIDKFSLKVTLKDVESAMVDIRP-SAM 503

Query:   143 SSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPP 202
               I L    E P V ++DIGG +  K +++E ++LPL   E + ++GI  P+GVLLYGPP
Sbjct:   504 REIFL----EMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPP 559

Query:   203 GTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             G  KT+ AKA+A  +   F+ V G E   KY+GE     ++IF
Sbjct:   560 GCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIF 602

 Score = 213 (80.0 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/90 (43%), Positives = 57/90 (63%)

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
             ++Y  +GG D + + ++ A+E+PL    L+   G+ PPRG+LL+GPPGTGKTML + VAN
Sbjct:   242 LSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVAN 301

Query:   216 HTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              + A  + + G   V KYLGE     + IF
Sbjct:   302 TSNAHVLTINGPSIVSKYLGETEAALRDIF 331


>CGD|CAL0000102 [details] [associations]
            symbol:RIX7 species:5476 "Candida albicans" [GO:0030448
            "hyphal growth" evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
            [GO:0000055 "ribosomal large subunit export from nucleus"
            evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
            evidence=IEA] [GO:0044011 "single-species biofilm formation on
            inanimate substrate" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0000102 GO:GO:0005524 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0030448 GO:GO:0044011 EMBL:AACQ01000021
            EMBL:AACQ01000022 KO:K14571 RefSeq:XP_720530.1 RefSeq:XP_720658.1
            ProteinModelPortal:Q5AGG2 STRING:Q5AGG2 GeneID:3637615
            GeneID:3637735 KEGG:cal:CaO19.11695 KEGG:cal:CaO19.4219
            Uniprot:Q5AGG2
        Length = 827

 Score = 223 (83.6 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 51/133 (38%), Positives = 74/133 (55%)

Query:   113 INRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIR 172
             +N+E L P A +      NAL  V P       + +     PDVT+ ++G     + E+ 
Sbjct:   482 LNQEQLAPLA-ITYQDFVNALPSVQPSAKREGFATI-----PDVTWQNVGALFKIRMELH 535

Query:   173 EAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232
               +  P+   ELY ++GI  P GVL++GPPG GKT+LAKAVAN + A FI + G E + K
Sbjct:   536 MCIVQPIKKPELYLKVGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNK 595

Query:   233 YLGEVWLKHKQIF 245
             Y+GE     +Q+F
Sbjct:   596 YVGESEKAVRQVF 608

 Score = 192 (72.6 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 36/92 (39%), Positives = 53/92 (57%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P++  + +GG +    ++ E + LP+ H E+Y   G++PPRGVLLYGPPG GKT +A A+
Sbjct:   188 PNIDLSSLGGVESVTTQLLEIIGLPILHPEIYSSTGVEPPRGVLLYGPPGCGKTTIANAL 247

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A      FI +     V    GE   K ++IF
Sbjct:   248 AGELKVPFINISAPSVVSGMSGESEKKLREIF 279


>UNIPROTKB|Q5AGG2 [details] [associations]
            symbol:RIX7 "Putative uncharacterized protein"
            species:237561 "Candida albicans SC5314" [GO:0030448 "hyphal
            growth" evidence=IMP] [GO:0044011 "single-species biofilm formation
            on inanimate substrate" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0000102 GO:GO:0005524 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0030448 GO:GO:0044011 EMBL:AACQ01000021
            EMBL:AACQ01000022 KO:K14571 RefSeq:XP_720530.1 RefSeq:XP_720658.1
            ProteinModelPortal:Q5AGG2 STRING:Q5AGG2 GeneID:3637615
            GeneID:3637735 KEGG:cal:CaO19.11695 KEGG:cal:CaO19.4219
            Uniprot:Q5AGG2
        Length = 827

 Score = 223 (83.6 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 51/133 (38%), Positives = 74/133 (55%)

Query:   113 INRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIR 172
             +N+E L P A +      NAL  V P       + +     PDVT+ ++G     + E+ 
Sbjct:   482 LNQEQLAPLA-ITYQDFVNALPSVQPSAKREGFATI-----PDVTWQNVGALFKIRMELH 535

Query:   173 EAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232
               +  P+   ELY ++GI  P GVL++GPPG GKT+LAKAVAN + A FI + G E + K
Sbjct:   536 MCIVQPIKKPELYLKVGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNK 595

Query:   233 YLGEVWLKHKQIF 245
             Y+GE     +Q+F
Sbjct:   596 YVGESEKAVRQVF 608

 Score = 192 (72.6 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 36/92 (39%), Positives = 53/92 (57%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P++  + +GG +    ++ E + LP+ H E+Y   G++PPRGVLLYGPPG GKT +A A+
Sbjct:   188 PNIDLSSLGGVESVTTQLLEIIGLPILHPEIYSSTGVEPPRGVLLYGPPGCGKTTIANAL 247

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A      FI +     V    GE   K ++IF
Sbjct:   248 AGELKVPFINISAPSVVSGMSGESEKKLREIF 279


>DICTYBASE|DDB_G0282181 [details] [associations]
            symbol:nvl "valosin-containing protein" species:44689
            "Dictyostelium discoideum" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;ISS] [GO:0000055 "ribosomal large subunit
            export from nucleus" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
            dictyBase:DDB_G0282181 GO:GO:0005524 GO:GO:0005730
            GenomeReviews:CM000152_GR EMBL:AAFI02000045 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0000055 KO:K14571
            RefSeq:XP_640327.1 ProteinModelPortal:Q54SY2
            EnsemblProtists:DDB0237516 GeneID:8623428 KEGG:ddi:DDB_G0282181
            InParanoid:Q54SY2 OMA:KQIQYYK ProtClustDB:CLSZ2846768
            Uniprot:Q54SY2
        Length = 867

 Score = 223 (83.6 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 57/154 (37%), Positives = 86/154 (55%)

Query:    99 STTGSNYYVRILST---INRELLKP----SASVALHRHSNALVDVLPPEADSSISLLSQS 151
             STT  N     LST   I++E L+P    S  + +     AL  V+P       + +   
Sbjct:   506 STTNINNIG--LSTELLISKEPLEPEKLNSLYIEMIDFKKALKKVVPAAKREGFATI--- 560

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
               P+VT++D+G     ++E+  ++  P+ + + YK +GID P GVL+YGPPG GKT+LAK
Sbjct:   561 --PNVTWDDVGALSGVREELTNSILRPIRYPKKYKNMGIDSPAGVLMYGPPGCGKTLLAK 618

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A+A+   A FI V G E + KY+GE     +Q+F
Sbjct:   619 AIASECQANFISVKGPELLNKYVGESERAVRQVF 652

 Score = 199 (75.1 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 49/172 (28%), Positives = 91/172 (52%)

Query:    75 RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVA-LHRHSNAL 133
             R +++P  +       + NN I  +TT +N  V   ++  ++ LK S++   + + SN  
Sbjct:   137 RDENIPSNVNSNNNNNNNNNAINSNTTTNN--VNTPNSKPKKKLKNSSNGNNVFQFSNNN 194

Query:   134 VDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP 193
              +      ++  + LS    P + ++++GG +   ++IRE +E P+ H E+Y  +G++PP
Sbjct:   195 NN----NGNNKDNNLSNGLIPTINFSNLGGVESCLRDIREHIEYPICHPEIYSHLGVEPP 250

Query:   194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             RG+LL+GP G GKT+LAKA+A         +  +E      GE   + + +F
Sbjct:   251 RGILLHGPSGCGKTLLAKAIAGELKVPLFAISATEITSGVSGESEARVRTLF 302


>GENEDB_PFALCIPARUM|PF07_0047 [details] [associations]
            symbol:PF07_0047 "cell division cycle ATPase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0051726 "regulation of cell cycle"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0016887 GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 PANTHER:PTHR23077:SF18
            SMART:SM01073 EMBL:AL844506 EMBL:M96757 RefSeq:XP_001349023.1
            ProteinModelPortal:P46468 IntAct:P46468 MINT:MINT-1593477
            PRIDE:P46468 EnsemblProtists:PF07_0047:mRNA GeneID:2655095
            KEGG:pfa:PF07_0047 EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
        Length = 1229

 Score = 225 (84.3 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 43/96 (44%), Positives = 63/96 (65%)

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
             +    D+TY D+GG   Q  +IRE +ELPL + E++  IGI  P+GVL++G PGTGKT +
Sbjct:   518 EENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSI 577

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AKA+AN + A    + G E + K++GE   K ++IF
Sbjct:   578 AKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIF 613

 Score = 209 (78.6 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 41/96 (42%), Positives = 60/96 (62%)

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
             Q + P VT+NDIGG +  K++++E +  PL +  LY +   +  +G+LLYGPPG GKT+L
Sbjct:   925 QVQIPTVTWNDIGGMNEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLL 984

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AKA+AN   A FI V G E +  + GE     + +F
Sbjct:   985 AKAIANECKANFISVKGPELLTMWFGESEANVRDLF 1020


>UNIPROTKB|P46468 [details] [associations]
            symbol:PF07_0047 "Putative cell division cycle ATPase"
            species:36329 "Plasmodium falciparum 3D7" [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0051726 "regulation of cell cycle" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0016887
            GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 PANTHER:PTHR23077:SF18 SMART:SM01073 EMBL:AL844506
            EMBL:M96757 RefSeq:XP_001349023.1 ProteinModelPortal:P46468
            IntAct:P46468 MINT:MINT-1593477 PRIDE:P46468
            EnsemblProtists:PF07_0047:mRNA GeneID:2655095 KEGG:pfa:PF07_0047
            EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
        Length = 1229

 Score = 225 (84.3 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 43/96 (44%), Positives = 63/96 (65%)

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
             +    D+TY D+GG   Q  +IRE +ELPL + E++  IGI  P+GVL++G PGTGKT +
Sbjct:   518 EENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSI 577

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AKA+AN + A    + G E + K++GE   K ++IF
Sbjct:   578 AKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIF 613

 Score = 209 (78.6 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 41/96 (42%), Positives = 60/96 (62%)

Query:   150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
             Q + P VT+NDIGG +  K++++E +  PL +  LY +   +  +G+LLYGPPG GKT+L
Sbjct:   925 QVQIPTVTWNDIGGMNEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLL 984

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AKA+AN   A FI V G E +  + GE     + +F
Sbjct:   985 AKAIANECKANFISVKGPELLTMWFGESEANVRDLF 1020


>SGD|S000005273 [details] [associations]
            symbol:PEX6 "AAA-peroxin" species:4932 "Saccharomyces
            cerevisiae" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS;IMP] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005777 "peroxisome"
            evidence=IEA;IMP;IDA] [GO:0007031 "peroxisome organization"
            evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0005778
            "peroxisomal membrane" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0046982 "protein heterodimerization activity"
            evidence=IMP;IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0016562
            "protein import into peroxisome matrix, receptor recycling"
            evidence=IGI;IDA;IMP] [GO:0001302 "replicative cell aging"
            evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000005273 GO:GO:0005829 GO:GO:0005524 GO:GO:0005777
            EMBL:X83226 EMBL:BK006947 GO:GO:0001302 GO:GO:0016887 GO:GO:0005778
            GO:GO:0046982 eggNOG:COG0464 EMBL:Z46259 GO:GO:0016562 KO:K13339
            GeneTree:ENSGT00550000074953 OrthoDB:EOG48PQTF EMBL:L20789
            EMBL:Z71605 PIR:S43211 RefSeq:NP_014070.1 ProteinModelPortal:P33760
            SMR:P33760 DIP:DIP-2621N IntAct:P33760 MINT:MINT-423224
            STRING:P33760 PaxDb:P33760 PeptideAtlas:P33760 EnsemblFungi:YNL329C
            GeneID:855387 KEGG:sce:YNL329C CYGD:YNL329c HOGENOM:HOG000248247
            OMA:FTGADFY NextBio:979190 ArrayExpress:P33760
            Genevestigator:P33760 GermOnline:YNL329C Uniprot:P33760
        Length = 1030

 Score = 213 (80.0 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
 Identities = 42/102 (41%), Positives = 65/102 (63%)

Query:   144 SISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPG 203
             S+S+    + P+VT++DIGG D  K EI + +++PL H EL+   G+    G+L YGPPG
Sbjct:   718 SVSI-GAPQIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPG 775

Query:   204 TGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             TGKT++AKA+A + +  F  V G E +  Y+GE     +++F
Sbjct:   776 TGKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVF 817

 Score = 36 (17.7 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query:   112 TINRELLKPSASV 124
             TI+R+LL+P+  +
Sbjct:   213 TISRDLLRPAPHI 225


>TAIR|locus:2103555 [details] [associations]
            symbol:CIP111 "Cam interacting protein 111" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005516 "calmodulin binding" evidence=IDA;TAS] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:CP002686 GO:GO:0016887 GO:GO:0005516 HSSP:Q01853
            eggNOG:COG0464 EMBL:AL390921 GO:GO:0009535 HOGENOM:HOG000223224
            EMBL:AF217546 EMBL:AF217547 IPI:IPI00534707 PIR:T50927 PIR:T51257
            RefSeq:NP_191228.1 UniGene:At.9830 ProteinModelPortal:Q9LET7
            SMR:Q9LET7 IntAct:Q9LET7 STRING:Q9LET7 PRIDE:Q9LET7
            EnsemblPlants:AT3G56690.1 GeneID:824836 KEGG:ath:AT3G56690
            GeneFarm:2042 TAIR:At3g56690 InParanoid:Q9LET7 OMA:SEAKLNF
            PhylomeDB:Q9LET7 ProtClustDB:CLSN2684205 Genevestigator:Q9LET7
            Uniprot:Q9LET7
        Length = 1022

 Score = 205 (77.2 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
 Identities = 44/114 (38%), Positives = 64/114 (56%)

Query:   123 SVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHH 182
             SV      NA   + P  A   + L    E P V + D+GG +  K ++ EAVE P  H 
Sbjct:   693 SVGFEDFENAKTKIRP-SAMREVIL----EVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQ 747

Query:   183 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             + +K+IG  PP G+L++GPPG  KT++A+AVA+     F+ V G E   K++GE
Sbjct:   748 DAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGE 801

 Score = 150 (57.9 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 38/128 (29%), Positives = 60/128 (46%)

Query:   112 TINRE---LLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 168
             T NR    ++     V LH H+  L   +            + E      + +GG   + 
Sbjct:   336 TSNRNHAFMINQETKVYLH-HTLDLASEIQGRTFVQGLQFDEGENVGCEISKLGGLSKEY 394

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228
               +R+ ++     + L   +G+ P +GVL++GPPGTGKT LA+  A H+   F  V G E
Sbjct:   395 AILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPE 453

Query:   229 FVQKYLGE 236
              + +YLGE
Sbjct:   454 IISQYLGE 461

 Score = 43 (20.2 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query:    14 SEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLE 46
             SEPP S R+  +   S + D  +  + L+R +E
Sbjct:    17 SEPPASPRTPASSTTSRDTDSINE-EELRRSIE 48


>DICTYBASE|DDB_G0282241 [details] [associations]
            symbol:DDB_G0282241 species:44689 "Dictyostelium
            discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0282241 GO:GO:0005524 eggNOG:COG0464
            GO:GO:0017111 EMBL:AAFI02000046 RefSeq:XP_640304.1
            ProteinModelPortal:Q54ST1 EnsemblProtists:DDB0205288 GeneID:8623480
            KEGG:ddi:DDB_G0282241 InParanoid:Q54ST1 OMA:IEMISID Uniprot:Q54ST1
        Length = 825

 Score = 204 (76.9 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
 Identities = 37/91 (40%), Positives = 61/91 (67%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V+++DIGG D  K+E+R+A+E P  + E +++ G+ PP+G++LYGPPG  KT L KAVA
Sbjct:   566 NVSWDDIGGLDDIKEELRQAIEWPNLYKESFEKFGLSPPKGIILYGPPGCSKTTLVKAVA 625

Query:   215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             + +  +F+ + G+     YLG+     + IF
Sbjct:   626 SSSKLSFLSLSGATIFSPYLGDSEQTIRDIF 656

 Score = 147 (56.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 52/221 (23%), Positives = 101/221 (45%)

Query:    37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLR----AQEEVKRIQSVPLVI-GQFMEMVD 91
             ++   +  L  +DI E  V +   N   E +R    +++ +K++    L+  G  + + +
Sbjct:   160 KVNEFENNLNNVDI-EIIVSNNNNNNNNENIRTLFSSKQFIKQLLINKLICSGMNISLYN 218

Query:    92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
              N  ++     +N  ++I       L+  S  + +   +N  +  L     S++  L+  
Sbjct:   219 NNVNLIIKNVNNNNNLKI------GLISQSTKINIIIITNESLSCLYSSNSSNLLNLNYK 272

Query:   152 EKP----DVTYND---IGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGT 204
              K      +  N+   IGG + Q + + E +  P+   +++K + IDPP+G+LL GPPGT
Sbjct:   273 NKLFKKFKLNNNNNFKIGGLNEQIKLLEEMMIYPILFPQVFKTLNIDPPKGILLKGPPGT 332

Query:   205 GKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             GKT L + V +      I +  ++    Y+GE     + IF
Sbjct:   333 GKTHLVRTVCDAYDIEMISIDCAKISGSYIGETEENLRNIF 373

 Score = 40 (19.1 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query:    74 KRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 115
             K  Q+   V+GQF+ ++D   GI G+  G+   + I++  NR
Sbjct:   404 KSTQNESRVVGQFLTLLD---GI-GARKGN---LIIIAATNR 438

 Score = 39 (18.8 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query:    50 IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
             I   Y+ + ++NL+     A ++     + P+V+  F++ +D
Sbjct:   357 ISGSYIGETEENLRNIFQEASDKSIAKSNSPIVV--FIDEID 396


>POMBASE|SPBC16E9.10c [details] [associations]
            symbol:SPBC16E9.10c "AAA family ATPase Rix7
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000055
            "ribosomal large subunit export from nucleus" evidence=ISO]
            [GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0016887
            "ATPase activity" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC16E9.10c GO:GO:0005524 GO:GO:0005730
            EMBL:CU329671 GO:GO:0016887 HSSP:Q01853 eggNOG:COG0464
            HOGENOM:HOG000223225 GO:GO:0000055 KO:K14571 OMA:NDMTLKE
            OrthoDB:EOG40GH00 PIR:T39584 RefSeq:NP_595792.1
            ProteinModelPortal:O14325 STRING:O14325 EnsemblFungi:SPBC16E9.10c.1
            GeneID:2539968 KEGG:spo:SPBC16E9.10c NextBio:20801111
            Uniprot:O14325
        Length = 779

 Score = 218 (81.8 bits), Expect = 8.5e-17, P = 8.5e-17
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V++N+IG     + E++ A+  P+   ELY+ +GI  P GVLL+GPPG GKT+LAKAV
Sbjct:   487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAV 546

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AN + A FI + G E + KY+GE     +Q+F
Sbjct:   547 ANESKANFISIRGPELLNKYVGESERAVRQVF 578

 Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 76/241 (31%), Positives = 110/241 (45%)

Query:    13 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE 72
             + E P STR  +  Q+  E D+     SL+R  +   I E+ V+     LK E+   +E+
Sbjct:    32 IEEWPVSTRRAI--QFVQERDM-----SLRRIKK--PILEKVVEKVLDTLKAEV---EEK 79

Query:    73 VKRIQSVPLVIGQFMEMVDQN------NGIVGSTTGSNYYVRILSTINRELLKPSASVAL 126
             +   Q + LV     E  D N        ++  +  S +    L  I+ E  K S     
Sbjct:    80 LASSQDLVLVDSDMEEQSDSNLMEVKDTNVINKSITSLWSSPNLKEIDGEDEKKSVGQES 139

Query:   127 HRHSNALVDVLPPEADSSISLLSQSEKP--DVTYNDIGGCDIQKQEIREAVELPLTHHEL 184
                S    D       S       + +P  D++ +DIGG D    E+ E V +P+ H E+
Sbjct:   140 ITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEV 199

Query:   185 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQI 244
             Y+  GI PPRGVLL+GPPG GKTMLA A+AN     FI +     V    GE   K +++
Sbjct:   200 YQYTGIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREV 259

Query:   245 F 245
             F
Sbjct:   260 F 260


>ZFIN|ZDB-GENE-081104-252 [details] [associations]
            symbol:pex6 "peroxisomal biogenesis factor 6"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 ZFIN:ZDB-GENE-081104-252
            GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000074953
            EMBL:CU469387 IPI:IPI00836958 Ensembl:ENSDART00000104613
            Bgee:F1QMB0 Uniprot:F1QMB0
        Length = 1071

 Score = 218 (81.8 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 65/212 (30%), Positives = 103/212 (48%)

Query:    29 SDEDDLYSR-LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQE-EVKRI--QSVPLVIG 84
             S + +L S  + +   Q+    + E+  +    +L  +LL  ++  + RI  Q+   V+G
Sbjct:   665 SSQHELPSDVMAAFVHQVAIESLSEDQRRMVLSSLSEDLLLGKDVNLGRIAKQTAGFVLG 724

Query:    85 QFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSS 144
                 ++              Y+   +S    E L  S         +A +DVL  EA S 
Sbjct:   725 DLCALLTNAGKAAHRRLVETYFPEAVSEQEEEDLCVSGVSVTSEDFSAALDVLQ-EAHSQ 783

Query:   145 ISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGT 204
                +   + P V++ D+GG    K+EI + ++LPL H EL   +G+    G+LLYGPPGT
Sbjct:   784 A--IGAPKIPAVSWQDVGGLQQVKKEILDTIQLPLEHPELLS-LGLRRS-GLLLYGPPGT 839

Query:   205 GKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
             GKT+LAKAVA   T  F+ V G E +  Y+G+
Sbjct:   840 GKTLLAKAVATECTMTFLSVKGPELINMYVGQ 871


>WB|WBGene00010562 [details] [associations]
            symbol:cdc-48.3 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
            or egg hatching" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0007091
            "metaphase/anaphase transition of mitotic cell cycle" evidence=IMP]
            [GO:0007052 "mitotic spindle organization" evidence=IMP]
            [GO:0007067 "mitosis" evidence=IMP] [GO:0019901 "protein kinase
            binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0006469 "negative regulation of protein kinase activity"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
            "ATP catabolic process" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0009792 GO:GO:0006898
            GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0007052
            GO:GO:0002119 GO:GO:0006469 GO:GO:0000003 GO:GO:0016887 HSSP:Q01853
            eggNOG:COG0464 HOGENOM:HOG000223225 GeneTree:ENSGT00700000104502
            GO:GO:0007091 EMBL:Z75712 KO:K13525 PIR:T23322 RefSeq:NP_492211.1
            ProteinModelPortal:Q21222 SMR:Q21222 PaxDb:Q21222
            EnsemblMetazoa:K04G2.3 GeneID:172586 KEGG:cel:CELE_K04G2.3
            UCSC:K04G2.3 CTD:172586 WormBase:K04G2.3 InParanoid:Q21222
            OMA:QVAPTIV NextBio:876139 Uniprot:Q21222
        Length = 724

 Score = 215 (80.7 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 40/85 (47%), Positives = 59/85 (69%)

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             E P+V++NDIGG +  K EI++AV  P  H E +++ GIDPP G+LLYGPPG  KT++A+
Sbjct:   452 EVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGILLYGPPGCSKTLIAR 511

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             A+A+     F+ V G E   K++G+
Sbjct:   512 ALASEAKMNFLAVKGPELFSKWVGD 536


>DICTYBASE|DDB_G0278435 [details] [associations]
            symbol:DDB_G0278435 "AAA ATPase domain-containing
            protein" species:44689 "Dictyostelium discoideum" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0278435 GO:GO:0005524 EMBL:AAFI02000023
            GO:GO:0016887 eggNOG:COG0464 KO:K14575 InterPro:IPR009010
            SUPFAM:SSF50692 RefSeq:XP_642364.1 ProteinModelPortal:Q54Y38
            EnsemblProtists:DDB0237527 GeneID:8621569 KEGG:ddi:DDB_G0278435
            InParanoid:Q54Y38 OMA:TSICREA Uniprot:Q54Y38
        Length = 886

 Score = 215 (80.7 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 43/94 (45%), Positives = 63/94 (67%)

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             E P V + DIGG +  KQ+++EA+E PL + + + ++GI PP+G+LLYGPPG  KT+LAK
Sbjct:   615 EIPKVFWGDIGGQEHIKQKLKEAIEWPLKYPQSFIRMGIKPPKGILLYGPPGCSKTLLAK 674

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A+A  +   FI V G E + K++GE     + IF
Sbjct:   675 ALATESGLNFIAVKGPELLSKWVGESERAVRDIF 708

 Score = 208 (78.3 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 38/104 (36%), Positives = 65/104 (62%)

Query:   142 DSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGP 201
             ++S + +  ++  ++ +  IGG D+Q ++IRE ++L     +L K  G+ PP+G+LLYGP
Sbjct:   295 NNSNNKIDNNKNINLNFQSIGGLDLQVKQIRELIDLSFYKLDLLKSFGVKPPKGILLYGP 354

Query:   202 PGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             PGTGKT+LA+ VA  T A    + G++ + K+ G      ++IF
Sbjct:   355 PGTGKTLLARIVATQTNATLFTINGADILDKFYGMTEKTLQKIF 398


>ZFIN|ZDB-GENE-040426-2871 [details] [associations]
            symbol:nvl "nuclear VCP-like" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            ZFIN:ZDB-GENE-040426-2871 GO:GO:0005524 HSSP:Q01853 GO:GO:0017111
            KO:K14571 CTD:4931 HOVERGEN:HBG001226 EMBL:BC044464 IPI:IPI00503965
            RefSeq:NP_998649.1 UniGene:Dr.2359 ProteinModelPortal:Q803I9
            STRING:Q803I9 PRIDE:Q803I9 GeneID:406805 KEGG:dre:406805
            NextBio:20818314 ArrayExpress:Q803I9 Bgee:Q803I9 Uniprot:Q803I9
        Length = 796

 Score = 214 (80.4 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 53/137 (38%), Positives = 78/137 (56%)

Query:   116 ELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK-------PDVTYNDIGGCDIQK 168
             +LLK  +SV+L     A + VL  +  SS+  +  S K       PDVT+ D+G     +
Sbjct:   472 DLLK--SSVSLSEDQLAALCVLMSDFSSSLVRVQPSAKREGFATVPDVTWADVGALQDVR 529

Query:   169 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228
             +E+  A+  P+ + E +K +G+  P G+LL GPPG GKT+LAKAVAN +   FI V G E
Sbjct:   530 EELHMAIMAPIQNPEQFKALGLSAPAGLLLAGPPGCGKTLLAKAVANASGLNFISVKGPE 589

Query:   229 FVQKYLGEVWLKHKQIF 245
              +  Y+GE     +Q+F
Sbjct:   590 LLNMYVGESERAVRQVF 606

 Score = 179 (68.1 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:   156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
             V + D GG D   +E+ + + + + H E+Y+++G+ PPRG LL+GPPG GKT+LA+AVA 
Sbjct:   224 VKFEDFGGSDETLEEVCKLL-IHMRHPEVYQRLGVVPPRGFLLHGPPGCGKTLLAQAVAG 282

Query:   216 HTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              T    +++   E V    GE   K +++F
Sbjct:   283 ETALPLLKISAPELVSGVSGESEQKLRELF 312


>CGD|CAL0000992 [details] [associations]
            symbol:VPS4 species:5476 "Candida albicans" [GO:0006623
            "protein targeting to vacuole" evidence=IMP] [GO:0007033 "vacuole
            organization" evidence=IMP] [GO:0044182 "filamentous growth of a
            population of unicellular organisms" evidence=IMP] [GO:0045324
            "late endosome to vacuole transport" evidence=IMP] [GO:0000815
            "ESCRT III complex" evidence=ISS] [GO:0009405 "pathogenesis"
            evidence=IMP] [GO:0009306 "protein secretion" evidence=IMP]
            [GO:0071285 "cellular response to lithium ion" evidence=IMP]
            [GO:0030448 "hyphal growth" evidence=IMP] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0030447 "filamentous
            growth" evidence=IMP] [GO:0045053 "protein retention in Golgi
            apparatus" evidence=IEA] [GO:0070676 "intralumenal vesicle
            formation" evidence=IEA] [GO:0043328 "protein targeting to vacuole
            involved in ubiquitin-dependent protein catabolic process via the
            multivesicular body sorting pathway" evidence=IEA] [GO:0016125
            "sterol metabolic process" evidence=IEA] [GO:0051260 "protein
            homooligomerization" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0042803 "protein homodimerization activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            InterPro:IPR007330 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0000992 GO:GO:0005524 GO:GO:0009405 GO:GO:0009306
            Pfam:PF04212 eggNOG:COG0464 GO:GO:0017111 InterPro:IPR015415
            Pfam:PF09336 GO:GO:0030448 GO:GO:0007033 GO:GO:0006623
            GO:GO:0045324 GO:GO:0000815 GO:GO:0071285 EMBL:AACQ01000022
            GO:GO:0044182 SMART:SM00745 KO:K12196 RefSeq:XP_720644.1
            ProteinModelPortal:Q5AG40 SMR:Q5AG40 STRING:Q5AG40 GeneID:3637703
            KEGG:cal:CaO19.4339 Uniprot:Q5AG40
        Length = 439

 Score = 209 (78.6 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 45/96 (46%), Positives = 62/96 (64%)

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGI-DPPRGVLLYGPPGTGKTML 209
             SEKP+V ++DI G D  K+ ++EAV LP+   +L+  +G   P  G+LLYGPPGTGK+ L
Sbjct:   127 SEKPNVKWSDIAGLDAAKEALKEAVILPVKFPQLF--VGNRKPTSGILLYGPPGTGKSYL 184

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AKAVA    + F  V  S+ V K++GE     KQ+F
Sbjct:   185 AKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLF 220


>UNIPROTKB|Q5AG40 [details] [associations]
            symbol:VPS4 "Potential vacuolar sorting ATPase"
            species:237561 "Candida albicans SC5314" [GO:0000815 "ESCRT III
            complex" evidence=ISS] [GO:0006623 "protein targeting to vacuole"
            evidence=IMP] [GO:0007033 "vacuole organization" evidence=IMP]
            [GO:0009306 "protein secretion" evidence=IMP] [GO:0009405
            "pathogenesis" evidence=IMP] [GO:0030447 "filamentous growth"
            evidence=IMP] [GO:0030448 "hyphal growth" evidence=IMP] [GO:0044182
            "filamentous growth of a population of unicellular organisms"
            evidence=IMP] [GO:0045324 "late endosome to vacuole transport"
            evidence=IMP] [GO:0071285 "cellular response to lithium ion"
            evidence=IMP] InterPro:IPR007330 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0000992 GO:GO:0005524 GO:GO:0009405
            GO:GO:0009306 Pfam:PF04212 eggNOG:COG0464 GO:GO:0017111
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030448 GO:GO:0007033
            GO:GO:0006623 GO:GO:0045324 GO:GO:0000815 GO:GO:0071285
            EMBL:AACQ01000022 GO:GO:0044182 SMART:SM00745 KO:K12196
            RefSeq:XP_720644.1 ProteinModelPortal:Q5AG40 SMR:Q5AG40
            STRING:Q5AG40 GeneID:3637703 KEGG:cal:CaO19.4339 Uniprot:Q5AG40
        Length = 439

 Score = 209 (78.6 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 45/96 (46%), Positives = 62/96 (64%)

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGI-DPPRGVLLYGPPGTGKTML 209
             SEKP+V ++DI G D  K+ ++EAV LP+   +L+  +G   P  G+LLYGPPGTGK+ L
Sbjct:   127 SEKPNVKWSDIAGLDAAKEALKEAVILPVKFPQLF--VGNRKPTSGILLYGPPGTGKSYL 184

Query:   210 AKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AKAVA    + F  V  S+ V K++GE     KQ+F
Sbjct:   185 AKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLF 220


>POMBASE|SPAC17A5.01 [details] [associations]
            symbol:pex6 "peroxin-6 (predicted)" species:4896
            "Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005777 "peroxisome"
            evidence=ISO] [GO:0005778 "peroxisomal membrane" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0007031 "peroxisome
            organization" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPAC17A5.01 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CU329670 GO:GO:0005777 GenomeReviews:CU329670_GR GO:GO:0007031
            GO:GO:0016887 GO:GO:0005778 eggNOG:COG0464 KO:K13339 PIR:T37816
            RefSeq:NP_593468.1 ProteinModelPortal:O13764
            EnsemblFungi:SPAC17A5.01.1 GeneID:2542437 KEGG:spo:SPAC17A5.01
            OrthoDB:EOG48PQTF NextBio:20803494 Uniprot:O13764
        Length = 948

 Score = 213 (80.0 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 42/92 (45%), Positives = 59/92 (64%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V ++DIGG +  K  +R+ ++LPL   EL+ Q G+ P  GVLLYGPPGTGKT+LAKAV
Sbjct:   650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAV 708

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A   +  F+ + G E +  Y+GE     + +F
Sbjct:   709 ATELSLEFVSIKGPELLNMYVGESEANVRNVF 740


>SGD|S000003502 [details] [associations]
            symbol:YTA7 "Protein that localizes to chromatin and
            regulates histone expression" species:4932 "Saccharomyces
            cerevisiae" [GO:0042393 "histone binding" evidence=IDA;IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0031936 "negative regulation of chromatin silencing"
            evidence=IMP] [GO:0003682 "chromatin binding" evidence=IMP;IDA]
            [GO:0042406 "extrinsic to endoplasmic reticulum membrane"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IMP] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IMP] InterPro:IPR001487 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439
            PROSITE:PS00674 PROSITE:PS50014 SMART:SM00382 SGD:S000003502
            GO:GO:0005524 GO:GO:0005634 EMBL:BK006941 GO:GO:0045944
            GO:GO:0003682 GO:GO:0000122 GO:GO:0031936 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0042393 GO:GO:0042406 Gene3D:1.20.920.10
            SUPFAM:SSF47370 PROSITE:PS00633 EMBL:Y07893 EMBL:X81072
            GeneTree:ENSGT00550000074694 EMBL:Z73055 PIR:S64603
            RefSeq:NP_011786.1 ProteinModelPortal:P40340 SMR:P40340
            DIP:DIP-6557N IntAct:P40340 MINT:MINT-629064 STRING:P40340
            PaxDb:P40340 EnsemblFungi:YGR270W GeneID:853186 KEGG:sce:YGR270W
            CYGD:YGR270w HOGENOM:HOG000157282 OMA:YPELYQN OrthoDB:EOG473T0K
            NextBio:973329 Genevestigator:P40340 GermOnline:YGR270W
            Uniprot:P40340
        Length = 1379

 Score = 188 (71.2 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
 Identities = 38/96 (39%), Positives = 61/96 (63%)

Query:   155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
             +V ++DIGG D    +++E V LPL + ELY+   I PPRGVL +GPPGTGKT++A+A+A
Sbjct:   409 NVNFDDIGGLDNYIDQLKEMVALPLLYPELYQNFNITPPRGVLFHGPPGTGKTLMARALA 468

Query:   215 NHTTA-----AFIRVVGSEFVQKYLGEVWLKHKQIF 245
                ++      F    G++ + K++GE   + + +F
Sbjct:   469 ASCSSDERKITFFMRKGADILSKWVGEAERQLRLLF 504

 Score = 54 (24.1 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
 Identities = 28/88 (31%), Positives = 37/88 (42%)

Query:    10 PKPVSEPPPS-TRSDLT--EQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKREL 66
             P PV     S TR   T  E+  DE+D  SR ++L    E  ++QE    D     KR L
Sbjct:   213 PPPVRRALRSRTRHSRTSNEENDDEND-NSRNEALTLADEIRELQE----DSPIREKRFL 267

Query:    67 LRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
                 + V      PL      E +D+NN
Sbjct:   268 RERTKPVNYKLPPPLTASNAEEFIDKNN 295

 Score = 40 (19.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query:    23 DLTEQWSDEDDLYSRLKSLQRQLEFI----DIQEEYVKDEQKNLKRELLRAQEEVKRIQS 78
             +  +++ DED   +  +      +F+    D  EEY +D+++  +     + + +KR  S
Sbjct:   142 EFEDEYLDEDSKDNNRRRRAADRKFVVPDPDDDEEYDEDDEEGDRISHSASSKRLKRANS 201


>CGD|CAL0005974 [details] [associations]
            symbol:PEX6 species:5476 "Candida albicans" [GO:0006631
            "fatty acid metabolic process" evidence=ISO] [GO:0006625 "protein
            targeting to peroxisome" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=IEA;ISO] [GO:0046982 "protein heterodimerization
            activity" evidence=IEA;ISO] [GO:0016562 "protein import into
            peroxisome matrix, receptor recycling" evidence=IEA;ISO]
            [GO:0005829 "cytosol" evidence=IEA;ISO] [GO:0005777 "peroxisome"
            evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0001302
            "replicative cell aging" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005974 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005777 GO:GO:0016887 GO:GO:0046982 eggNOG:COG0464
            EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0016562 KO:K13339
            RefSeq:XP_714932.1 RefSeq:XP_714995.1 ProteinModelPortal:Q59ZE6
            STRING:Q59ZE6 GeneID:3643407 GeneID:3643436 KEGG:cal:CaO19.11057
            KEGG:cal:CaO19.3573 Uniprot:Q59ZE6
        Length = 1157

 Score = 213 (80.0 bits), Expect = 5.2e-16, P = 5.2e-16
 Identities = 40/92 (43%), Positives = 59/92 (64%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P+V + DIGG D+ K EI + +++PL H EL+   G+    G+L YGPPGTGKT+LAKA+
Sbjct:   810 PNVKWEDIGGLDLVKDEILDTIDMPLKHPELFNN-GLKKRSGILFYGPPGTGKTLLAKAI 868

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A + +  F  V G E +  Y+GE     +++F
Sbjct:   869 ATNFSLNFFSVKGPELLNMYIGESEANVRRVF 900


>UNIPROTKB|Q59ZE6 [details] [associations]
            symbol:PEX6 "Likely peroxisomal biogenesis AAA ATPase Pex6"
            species:237561 "Candida albicans SC5314" [GO:0005777 "peroxisome"
            evidence=ISO] [GO:0005829 "cytosol" evidence=ISO] [GO:0006200 "ATP
            catabolic process" evidence=ISO] [GO:0016562 "protein import into
            peroxisome matrix, receptor recycling" evidence=ISO] [GO:0016887
            "ATPase activity" evidence=ISO] [GO:0046982 "protein
            heterodimerization activity" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005974 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005777 GO:GO:0016887 GO:GO:0046982 eggNOG:COG0464
            EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0016562 KO:K13339
            RefSeq:XP_714932.1 RefSeq:XP_714995.1 ProteinModelPortal:Q59ZE6
            STRING:Q59ZE6 GeneID:3643407 GeneID:3643436 KEGG:cal:CaO19.11057
            KEGG:cal:CaO19.3573 Uniprot:Q59ZE6
        Length = 1157

 Score = 213 (80.0 bits), Expect = 5.2e-16, P = 5.2e-16
 Identities = 40/92 (43%), Positives = 59/92 (64%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P+V + DIGG D+ K EI + +++PL H EL+   G+    G+L YGPPGTGKT+LAKA+
Sbjct:   810 PNVKWEDIGGLDLVKDEILDTIDMPLKHPELFNN-GLKKRSGILFYGPPGTGKTLLAKAI 868

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A + +  F  V G E +  Y+GE     +++F
Sbjct:   869 ATNFSLNFFSVKGPELLNMYIGESEANVRRVF 900


>TAIR|locus:2007574 [details] [associations]
            symbol:PEX6 "peroxin 6" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0016558 "protein import into peroxisome matrix" evidence=IMP]
            [GO:0006635 "fatty acid beta-oxidation" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
            GO:GO:0005737 GO:GO:0006635 GO:GO:0016558 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 EMBL:AC006550 TCDB:3.A.20.1.2
            EMBL:AY333116 EMBL:AY078962 EMBL:BT001151 IPI:IPI00517292
            PIR:F86160 RefSeq:NP_171799.2 UniGene:At.42567
            ProteinModelPortal:Q8RY16 SMR:Q8RY16 STRING:Q8RY16 PaxDb:Q8RY16
            PRIDE:Q8RY16 EnsemblPlants:AT1G03000.1 GeneID:839315
            KEGG:ath:AT1G03000 GeneFarm:2442 TAIR:At1g03000
            HOGENOM:HOG000241031 InParanoid:Q8RY16 KO:K13339 OMA:RRCFSHE
            PhylomeDB:Q8RY16 ProtClustDB:CLSN2690380 Genevestigator:Q8RY16
            Uniprot:Q8RY16
        Length = 941

 Score = 211 (79.3 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 44/100 (44%), Positives = 61/100 (61%)

Query:   146 SLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTG 205
             S L   + P+V ++D+GG +  K  I + V+LPL H +L+   G+    GVLLYGPPGTG
Sbjct:   645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTG 703

Query:   206 KTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             KT+LAKAVA   +  F+ V G E +  Y+GE     + IF
Sbjct:   704 KTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIF 743


>MGI|MGI:2385054 [details] [associations]
            symbol:Pex6 "peroxisomal biogenesis factor 6" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0005777 "peroxisome" evidence=ISO] [GO:0005778 "peroxisomal
            membrane" evidence=ISO] [GO:0005829 "cytosol" evidence=ISO]
            [GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006625
            "protein targeting to peroxisome" evidence=ISO] [GO:0007031
            "peroxisome organization" evidence=ISO] [GO:0008022 "protein
            C-terminus binding" evidence=ISO] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016561 "protein import into peroxisome matrix,
            translocation" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0032403 "protein complex binding" evidence=ISO]
            [GO:0042623 "ATPase activity, coupled" evidence=ISO] [GO:0050821
            "protein stabilization" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 MGI:MGI:2385054 GO:GO:0005829 GO:GO:0005524
            GO:GO:0050821 GO:GO:0005778 eggNOG:COG0464 GO:GO:0042623
            GO:GO:0016561 HOGENOM:HOG000241031 KO:K13339 CTD:5190
            HOVERGEN:HBG002311 OMA:SWHDVGG OrthoDB:EOG47WNNP EMBL:BC003424
            EMBL:AY054409 IPI:IPI00116764 RefSeq:NP_663463.1 UniGene:Mm.299399
            ProteinModelPortal:Q99LC9 SMR:Q99LC9 STRING:Q99LC9
            PhosphoSite:Q99LC9 PaxDb:Q99LC9 PRIDE:Q99LC9
            Ensembl:ENSMUST00000002840 GeneID:224824 KEGG:mmu:224824
            GeneTree:ENSGT00550000074953 InParanoid:Q99LC9 NextBio:377397
            Bgee:Q99LC9 CleanEx:MM_PEX6 Genevestigator:Q99LC9
            GermOnline:ENSMUSG00000002763 Uniprot:Q99LC9
        Length = 981

 Score = 197 (74.4 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
 Identities = 40/92 (43%), Positives = 60/92 (65%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V+++D+GG    K+EI E ++LPL H EL   +G+    G+LL+GPPGTGKT+LAKAV
Sbjct:   701 PSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRRS-GLLLHGPPGTGKTLLAKAV 758

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A   +  F+ V G E +  Y+G+     +++F
Sbjct:   759 ATECSLTFLSVKGPELINMYVGQSEENVREVF 790

 Score = 40 (19.1 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query:     1 MAASAM-VLDPKPVSEPP 17
             MA + + VLDP P   PP
Sbjct:     1 MALAVLRVLDPFPTETPP 18


>FB|FBgn0032450 [details] [associations]
            symbol:CG5776 species:7227 "Drosophila melanogaster"
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
            "endoplasmic reticulum" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:AE014134 GO:GO:0006200 GO:GO:0016887 HSSP:Q01853
            eggNOG:COG0464 KO:K14575 GeneTree:ENSGT00700000104502 OMA:MLLRCVA
            EMBL:AY051725 RefSeq:NP_609585.1 UniGene:Dm.8715 SMR:Q9VK63
            EnsemblMetazoa:FBtr0080407 EnsemblMetazoa:FBtr0329925 GeneID:34680
            KEGG:dme:Dmel_CG5776 UCSC:CG5776-RA FlyBase:FBgn0032450
            InParanoid:Q9VK63 OrthoDB:EOG4547DV GenomeRNAi:34680 NextBio:789659
            Uniprot:Q9VK63
        Length = 799

 Score = 209 (78.6 bits), Expect = 8.1e-16, P = 8.1e-16
 Identities = 58/193 (30%), Positives = 99/193 (51%)

Query:    57 DEQKNLKRELLRAQEEVKR--IQSVPLVIG-QFMEMVDQ-NNGIVGSTTGSNYYVRILST 112
             D +  L     +A+ E+ R  I+SV   +  + +E V    +G VG+   +  Y  +L  
Sbjct:   441 DNEVELGAPSSQARLEIVRCLIKSVEHQLSDEEVEHVASITHGYVGADLANLVYAAMLQA 500

Query:   113 INRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIR 172
                 L  P    AL R        + P A   + +    E P+V ++DIGG    +  ++
Sbjct:   501 QPNPLQMPHLQAALTR--------IKPSAMREVLI----ECPNVQWSDIGGQSELRLAMQ 548

Query:   173 EAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232
             +A+E PL H + ++++GI PPRG+L++GPPG  KTM+AKA+A  +   F+ + G E    
Sbjct:   549 QAIEWPLLHADKFQRLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFLSIKGPELFSM 608

Query:   233 YLGEVWLKHKQIF 245
             ++GE     +++F
Sbjct:   609 WVGESERAVREVF 621


>GENEDB_PFALCIPARUM|MAL8P1.92 [details] [associations]
            symbol:MAL8P1.92 "ATPase, putative"
            species:5833 "Plasmodium falciparum" [GO:0016887 "ATPase activity"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 EMBL:AL844507 RefSeq:XP_001349382.2
            ProteinModelPortal:Q8IAX9 EnsemblProtists:MAL8P1.92:mRNA
            GeneID:2655443 KEGG:pfa:MAL8P1.92 EuPathDB:PlasmoDB:PF3D7_0814300
            Uniprot:Q8IAX9
        Length = 1200

 Score = 211 (79.3 bits), Expect = 8.8e-16, P = 8.8e-16
 Identities = 55/202 (27%), Positives = 102/202 (50%)

Query:    51 QEEYVKDEQKNLKRELLRAQEEVKRIQS--VPLVIGQFMEMVD-QNNGIVGSTTGSNYYV 107
             Q + +   ++N+    ++  +E  +I S  +P  +      ++ QNN  +        Y 
Sbjct:   562 QNDQLTSHEQNILITSIKTNDE-NQIASTEIPQELSNDSPCLNNQNNHNLKEINHKRKYN 620

Query:   108 RILSTINRE-LLKPSASVALHRHSNALVDVLPPEADSSISLLSQS---EKPDVTYNDIGG 163
              +L ++N E +++  A   + +      D++    ++    ++     E P++  ++IG 
Sbjct:   621 MLLCSLNEEKVIEGKAEKKIQKTIEINNDIIFEGVNNIKKKMTNENICEVPNINLDNIGS 680

Query:   164 CDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 223
                 K+ +     LP+ +  +YK +GI+   G+LLYGPPG GKTMLAKA++N   A FI 
Sbjct:   681 LKKIKKILESKFILPVKYSNIYKHLGINKSMGILLYGPPGCGKTMLAKAISNEMKANFIA 740

Query:   224 VVGSEFVQKYLGEVWLKHKQIF 245
             + G E + KY+GE   K ++IF
Sbjct:   741 IKGPEILNKYVGESEKKVREIF 762


>SGD|S000006377 [details] [associations]
            symbol:VPS4 "AAA-ATPase involved in multivesicular body (MVB)
            protein sorting" species:4932 "Saccharomyces cerevisiae"
            [GO:0042803 "protein homodimerization activity" evidence=IDA]
            [GO:0045053 "protein retention in Golgi apparatus" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA;IMP;IDA] [GO:0015031
            "protein transport" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA;IDA] [GO:0070676 "intralumenal vesicle formation"
            evidence=IMP] [GO:0045324 "late endosome to vacuole transport"
            evidence=IMP;IPI] [GO:0016887 "ATPase activity" evidence=IMP;IDA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005768
            "endosome" evidence=IEA;IDA] [GO:0006810 "transport" evidence=IEA]
            [GO:0010008 "endosome membrane" evidence=IEA] [GO:0032511 "late
            endosome to vacuole transport via multivesicular body sorting
            pathway" evidence=IMP] [GO:0016125 "sterol metabolic process"
            evidence=IGI;IMP] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0051260 "protein
            homooligomerization" evidence=IDA] InterPro:IPR007330
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000006377
            GO:GO:0005783 GO:GO:0005524 GO:GO:0042803 GO:GO:0016020
            GO:GO:0015031 GO:GO:0005768 GO:GO:0051260 GO:GO:0016887
            GO:GO:0010008 EMBL:BK006949 Pfam:PF04212 eggNOG:COG0464
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0016125 EMBL:U25842
            SMART:SM00745 GO:GO:0032511 GO:GO:0045053 PDB:2V6X PDBsum:2V6X
            GO:GO:0070676 GeneTree:ENSGT00550000074466 HOGENOM:HOG000225146
            KO:K12196 OMA:AKCAEYL OrthoDB:EOG4V1B8K EMBL:X92680 PIR:S59831
            RefSeq:NP_015499.1 PDB:2QP9 PDB:2QPA PDB:2RKO PDB:3EIE PDB:3EIH
            PDB:3MHV PDBsum:2QP9 PDBsum:2QPA PDBsum:2RKO PDBsum:3EIE
            PDBsum:3EIH PDBsum:3MHV ProteinModelPortal:P52917 SMR:P52917
            DIP:DIP-1746N IntAct:P52917 MINT:MINT-389240 STRING:P52917
            PaxDb:P52917 PeptideAtlas:P52917 EnsemblFungi:YPR173C GeneID:856303
            KEGG:sce:YPR173C CYGD:YPR173c EvolutionaryTrace:P52917
            NextBio:981664 Genevestigator:P52917 GermOnline:YPR173C
            Uniprot:P52917
        Length = 437

 Score = 203 (76.5 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 43/95 (45%), Positives = 59/95 (62%)

Query:   151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
             SEKP+V + D+ G +  K+ ++EAV LP+    L+K     P  G+LLYGPPGTGK+ LA
Sbjct:   125 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLA 183

Query:   211 KAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             KAVA    + F  V  S+ V K++GE     KQ+F
Sbjct:   184 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLF 218


>WB|WBGene00003119 [details] [associations]
            symbol:mac-1 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
            junction helicase activity" evidence=IEA] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0006629 "lipid metabolic process" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0019915 "lipid
            storage" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0040007 GO:GO:0002119 GO:GO:0006629
            GO:GO:0000003 GO:GO:0019915 HSSP:Q01853 eggNOG:COG0464
            HOGENOM:HOG000223225 GO:GO:0017111 KO:K14571 OMA:NDMTLKE
            GeneTree:ENSGT00570000079239 EMBL:AL117203 PIR:T31591
            RefSeq:NP_496814.1 ProteinModelPortal:Q9NAG4 SMR:Q9NAG4
            IntAct:Q9NAG4 STRING:Q9NAG4 PaxDb:Q9NAG4 EnsemblMetazoa:Y48C3A.7
            GeneID:174974 KEGG:cel:CELE_Y48C3A.7 UCSC:Y48C3A.7 CTD:174974
            WormBase:Y48C3A.7 InParanoid:Q9NAG4 NextBio:886252
            ArrayExpress:Q9NAG4 Uniprot:Q9NAG4
        Length = 813

 Score = 182 (69.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 39/85 (45%), Positives = 57/85 (67%)

Query:   154 PDVTYNDIGGC-DIQKQEIREAVELPLTHHELYKQIGID-PPRGVLLYGPPGTGKTMLAK 211
             PDV+++DIG   +++KQ +  ++  P+   + +  +GID  P+G+LL GPPG GKT+LAK
Sbjct:   528 PDVSWDDIGALVEVRKQ-LEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAK 586

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             AVAN T   FI V G E +  Y+GE
Sbjct:   587 AVANETGMNFISVKGPELLNMYVGE 611

 Score = 162 (62.1 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
 Identities = 36/111 (32%), Positives = 58/111 (52%)

Query:   138 PPEADSSISLLSQSEKP---DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 194
             PP     +  +S +  P    V +  IGG D Q  E+   + + L   + +  +G+DPPR
Sbjct:   182 PPALPRGLGAVSDTISPRESHVKFEHIGGADRQFLEVCR-LAMHLKRPKTFATLGVDPPR 240

Query:   195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             G +++GPPG GKTM A+AVA       +++  +E V    GE   K +++F
Sbjct:   241 GFIVHGPPGCGKTMFAQAVAGELAIPMLQLAATELVSGVSGETEEKIRRLF 291

 Score = 51 (23.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSV 79
             K  + +L   D+Q+E+ + ++KN K  +   +E ++RIQ V
Sbjct:    28 KYFKPELVAYDLQQEHPEYQRKNHKVFMGMVREALERIQLV 68


>UNIPROTKB|Q9NAG4 [details] [associations]
            symbol:mac-1 "Protein MAC-1" species:6239 "Caenorhabditis
            elegans" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0040007 GO:GO:0002119 GO:GO:0006629 GO:GO:0000003
            GO:GO:0019915 HSSP:Q01853 eggNOG:COG0464 HOGENOM:HOG000223225
            GO:GO:0017111 KO:K14571 OMA:NDMTLKE GeneTree:ENSGT00570000079239
            EMBL:AL117203 PIR:T31591 RefSeq:NP_496814.1
            ProteinModelPortal:Q9NAG4 SMR:Q9NAG4 IntAct:Q9NAG4 STRING:Q9NAG4
            PaxDb:Q9NAG4 EnsemblMetazoa:Y48C3A.7 GeneID:174974
            KEGG:cel:CELE_Y48C3A.7 UCSC:Y48C3A.7 CTD:174974 WormBase:Y48C3A.7
            InParanoid:Q9NAG4 NextBio:886252 ArrayExpress:Q9NAG4 Uniprot:Q9NAG4
        Length = 813

 Score = 182 (69.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 39/85 (45%), Positives = 57/85 (67%)

Query:   154 PDVTYNDIGGC-DIQKQEIREAVELPLTHHELYKQIGID-PPRGVLLYGPPGTGKTMLAK 211
             PDV+++DIG   +++KQ +  ++  P+   + +  +GID  P+G+LL GPPG GKT+LAK
Sbjct:   528 PDVSWDDIGALVEVRKQ-LEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAK 586

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             AVAN T   FI V G E +  Y+GE
Sbjct:   587 AVANETGMNFISVKGPELLNMYVGE 611

 Score = 162 (62.1 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
 Identities = 36/111 (32%), Positives = 58/111 (52%)

Query:   138 PPEADSSISLLSQSEKP---DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 194
             PP     +  +S +  P    V +  IGG D Q  E+   + + L   + +  +G+DPPR
Sbjct:   182 PPALPRGLGAVSDTISPRESHVKFEHIGGADRQFLEVCR-LAMHLKRPKTFATLGVDPPR 240

Query:   195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             G +++GPPG GKTM A+AVA       +++  +E V    GE   K +++F
Sbjct:   241 GFIVHGPPGCGKTMFAQAVAGELAIPMLQLAATELVSGVSGETEEKIRRLF 291

 Score = 51 (23.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSV 79
             K  + +L   D+Q+E+ + ++KN K  +   +E ++RIQ V
Sbjct:    28 KYFKPELVAYDLQQEHPEYQRKNHKVFMGMVREALERIQLV 68


>TIGR_CMR|CJE_1085 [details] [associations]
            symbol:CJE_1085 "cell division protein FtsH, putative"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0051301 EMBL:CP000025 GenomeReviews:CP000025_GR
            eggNOG:COG0465 GO:GO:0017111 HOGENOM:HOG000217276 KO:K01417
            RefSeq:YP_179078.1 ProteinModelPortal:Q5HUF7 SMR:Q5HUF7
            STRING:Q5HUF7 GeneID:3231594 KEGG:cjr:CJE1085 PATRIC:20043979
            OMA:HRSDERE ProtClustDB:CLSK2395802
            BioCyc:CJEJ195099:GJC0-1111-MONOMER Uniprot:Q5HUF7
        Length = 538

 Score = 204 (76.9 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 69/227 (30%), Positives = 114/227 (50%)

Query:    31 EDDLYSRLKSLQR-QLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQS-VPLVIGQ--- 85
             +++LY RL S    Q   ID  E ++K E +N    +++   ++K + S VP+ + +   
Sbjct:    31 DENLYQRLLSQNLIQKAVIDKDEIWLKAEGENYV--IIKDGIDIKTLLSKVPVEVKKDNT 88

Query:    86 ----FMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEA 141
                 F+ ++     I+       Y+ R      +EL K   S     H+ A         
Sbjct:    89 LWVFFVLLIF----IIALFISLGYFAR-----KKELAKYPISNKNQNHTQA--------Q 131

Query:   142 DSSISLLSQSEKP---DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 198
             +S+I+L S   KP   ++T+ND+ G D  K E+ E V+  L + + YK+ G+  P+GVL+
Sbjct:   132 NSNINLESSHIKPVISNITFNDVAGVDEVKMELSELVDF-LQNPKKYKEFGVKMPKGVLM 190

Query:   199 YGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
              GPPG GKT++AKAVA      F    GS FV+ Y+G    + +++F
Sbjct:   191 VGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFVEIYVGMGAKRVRELF 237


>TIGR_CMR|CJE_1259 [details] [associations]
            symbol:CJE_1259 "cell division protein FtsH"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0030163
            eggNOG:COG0465 TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
            OMA:RARASMP RefSeq:YP_179247.1 ProteinModelPortal:Q5HTY8 SMR:Q5HTY8
            STRING:Q5HTY8 GeneID:3231766 KEGG:cjr:CJE1259 PATRIC:20044314
            ProtClustDB:CLSK872348 BioCyc:CJEJ195099:GJC0-1285-MONOMER
            Uniprot:Q5HTY8
        Length = 645

 Score = 205 (77.2 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 40/88 (45%), Positives = 58/88 (65%)

Query:   148 LSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT 207
             L  SEKP V ++D+ G +  K+E++E V+  L + E Y ++G   P+G+LL GPPGTGKT
Sbjct:   167 LVNSEKPKVKFSDVAGVEEAKEEVKEIVDF-LKYPERYIKLGAKIPKGLLLVGPPGTGKT 225

Query:   208 MLAKAVANHTTAAFIRVVGSEFVQKYLG 235
             +LAKAVA      F  V GS F++ ++G
Sbjct:   226 LLAKAVAGEADVPFFSVSGSSFIEMFVG 253


>TAIR|locus:2174819 [details] [associations]
            symbol:EMB3144 "EMBRYO DEFECTIVE 3144" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009790
            "embryo development" evidence=IMP] [GO:0006364 "rRNA processing"
            evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
            [GO:0009658 "chloroplast organization" evidence=RCA] [GO:0016556
            "mRNA modification" evidence=RCA] [GO:0009536 "plastid"
            evidence=IDA] InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 EMBL:CP002688
            GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 GO:GO:0009790
            GO:GO:0017111 IPI:IPI00527762 RefSeq:NP_201263.2 UniGene:At.28951
            ProteinModelPortal:F4KF14 SMR:F4KF14 PRIDE:F4KF14
            EnsemblPlants:AT5G64580.1 GeneID:836579 KEGG:ath:AT5G64580
            OMA:LCWISAK Uniprot:F4KF14
        Length = 855

 Score = 195 (73.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 41/103 (39%), Positives = 63/103 (61%)

Query:   143 SSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPP 202
             S    +S  EK  VT++D  G +  K+E++E V + L + E ++  GI  P+GVLL+GPP
Sbjct:   300 SRAKFISAEEKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPP 358

Query:   203 GTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             GTGKT+LAKA+A      F    G++FV+ ++G    + K +F
Sbjct:   359 GTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLF 401

 Score = 37 (18.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query:    18 PSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQ 77
             PS R+ L    S     +   +S   Q E  D +   + ++ +  +RE L   EE++R  
Sbjct:    55 PSRRNGLITCCSTSS--FESTESSVSQEE--DAESNRLFEKLRETERERLSNMEELERKA 110

Query:    78 SVPL 81
             +V L
Sbjct:   111 NVQL 114


>DICTYBASE|DDB_G0268334 [details] [associations]
            symbol:DDB_G0268334 "Probable 26S protease subunit
            YTA6" species:44689 "Dictyostelium discoideum" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0268334 GO:GO:0005524 EMBL:AAFI02000003
            eggNOG:COG0464 GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
            ProtClustDB:CLSZ2729356 RefSeq:XP_647261.1
            ProteinModelPortal:Q55GC3 EnsemblProtists:DDB0202133 GeneID:8616066
            KEGG:ddi:DDB_G0268334 InParanoid:Q55GC3 OMA:TENENEA Uniprot:Q55GC3
        Length = 792

 Score = 187 (70.9 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 36/85 (42%), Positives = 52/85 (61%)

Query:   152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
             ++ +V + DI G    K +I E V  P+   EL+K + I PP+G+LL+GPPGTGKTM+ K
Sbjct:   513 KRQEVKWGDIAGLSEVKSQIMEMVVFPIIRPELFKGLRI-PPKGLLLFGPPGTGKTMIGK 571

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             A+A    A F  +  S    K++GE
Sbjct:   572 AIATQVKATFFSISASTLTSKWIGE 596

 Score = 44 (20.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query:    26 EQWSDEDDLYSRLKSLQRQ-LEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQS 78
             EQ   +     R++  QR+ LE    + E  ++ ++ L+RE  + Q++ ++ QS
Sbjct:   264 EQIKQQKLQQQRIEQEQREKLEQEQRERERERERKEQLEREKQQQQQQQQQRQS 317

 Score = 41 (19.5 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query:    39 KSLQRQLEFIDIQEEYVKDEQKN-LKRELLRAQEEVKR 75
             K  Q Q++   +Q++ ++ EQ+  L++E    + E +R
Sbjct:   260 KEKQEQIKQQKLQQQRIEQEQREKLEQEQRERERERER 297


>UNIPROTKB|A5GFQ7 [details] [associations]
            symbol:PEX6 "Peroxisomal biogenesis factor 6" species:9823
            "Sus scrofa" [GO:0032403 "protein complex binding" evidence=ISS]
            [GO:0006625 "protein targeting to peroxisome" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0050821 "protein
            stabilization" evidence=ISS] [GO:0042623 "ATPase activity, coupled"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0016561 "protein import into peroxisome matrix, translocation"
            evidence=ISS] [GO:0008022 "protein C-terminus binding"
            evidence=ISS] [GO:0007031 "peroxisome organization" evidence=ISS]
            [GO:0005829 "cytosol" evidence=ISS] [GO:0005777 "peroxisome"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005524 GO:GO:0050821 GO:GO:0005777 GO:GO:0032403
            GO:GO:0008022 eggNOG:COG0464 GO:GO:0042623 EMBL:CR956379
            GO:GO:0016561 HOGENOM:HOG000241031 KO:K13339 CTD:5190
            HOVERGEN:HBG002311 OMA:SWHDVGG OrthoDB:EOG47WNNP
            GeneTree:ENSGT00550000074953 RefSeq:NP_001103896.1
            UniGene:Ssc.19314 ProteinModelPortal:A5GFQ7 STRING:A5GFQ7
            Ensembl:ENSSSCT00000001838 GeneID:100126288 KEGG:ssc:100126288
            ArrayExpress:A5GFQ7 Uniprot:A5GFQ7
        Length = 969

 Score = 197 (74.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 40/92 (43%), Positives = 60/92 (65%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V+++D+GG    K+EI E ++LPL H EL   +G+    G+LL+GPPGTGKT+LAKAV
Sbjct:   689 PSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRRS-GLLLHGPPGTGKTLLAKAV 746

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A   +  F+ V G E +  Y+G+     +++F
Sbjct:   747 ATECSLTFLSVKGPELINMYVGQSEENVREVF 778

 Score = 36 (17.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query:     1 MAASAM-VLDPKPVSEPP 17
             MA + + VL+P P   PP
Sbjct:     1 MALAVLRVLEPFPTEAPP 18


>RGD|621637 [details] [associations]
            symbol:Pex6 "peroxisomal biogenesis factor 6" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005777 "peroxisome"
            evidence=IEA;ISO] [GO:0005778 "peroxisomal membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IEA;ISO] [GO:0006200 "ATP catabolic
            process" evidence=ISO] [GO:0006625 "protein targeting to
            peroxisome" evidence=ISO] [GO:0007031 "peroxisome organization"
            evidence=ISO;IMP] [GO:0008022 "protein C-terminus binding"
            evidence=IEA;ISO] [GO:0016561 "protein import into peroxisome
            matrix, translocation" evidence=IEA;ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] [GO:0032403 "protein complex binding"
            evidence=IEA;ISO] [GO:0042623 "ATPase activity, coupled"
            evidence=IEA;ISO] [GO:0050821 "protein stabilization"
            evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621637 GO:GO:0005524 GO:GO:0007031 GO:GO:0005778 eggNOG:COG0464
            GO:GO:0017111 HOGENOM:HOG000241031 KO:K13339 CTD:5190
            HOVERGEN:HBG002311 OrthoDB:EOG47WNNP EMBL:D63673 EMBL:D89660
            IPI:IPI00188277 RefSeq:NP_476466.1 UniGene:Rn.10675
            ProteinModelPortal:P54777 STRING:P54777 PRIDE:P54777 GeneID:117265
            KEGG:rno:117265 UCSC:RGD:621637 InParanoid:P54777 NextBio:620156
            Genevestigator:P54777 GermOnline:ENSRNOG00000016655 Uniprot:P54777
        Length = 978

 Score = 197 (74.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 40/92 (43%), Positives = 60/92 (65%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V+++D+GG    K+EI E ++LPL H EL   +G+    G+LL+GPPGTGKT+LAKAV
Sbjct:   698 PSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRRS-GLLLHGPPGTGKTLLAKAV 755

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A   +  F+ V G E +  Y+G+     +++F
Sbjct:   756 ATECSLTFLSVKGPELINMYVGQSEENVREVF 787

 Score = 36 (17.7 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query:     1 MAASAM-VLDPKPVSEPP 17
             MA + + VL+P P   PP
Sbjct:     1 MALAVLHVLEPFPTETPP 18


>UNIPROTKB|P54777 [details] [associations]
            symbol:Pex6 "Peroxisome assembly factor 2" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0016561 "protein import into peroxisome
            matrix, translocation" evidence=IEA] [GO:0032403 "protein complex
            binding" evidence=IEA] [GO:0042623 "ATPase activity, coupled"
            evidence=IEA] [GO:0050821 "protein stabilization" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:621637 GO:GO:0005524
            GO:GO:0007031 GO:GO:0005778 eggNOG:COG0464 GO:GO:0017111
            HOGENOM:HOG000241031 KO:K13339 CTD:5190 HOVERGEN:HBG002311
            OrthoDB:EOG47WNNP EMBL:D63673 EMBL:D89660 IPI:IPI00188277
            RefSeq:NP_476466.1 UniGene:Rn.10675 ProteinModelPortal:P54777
            STRING:P54777 PRIDE:P54777 GeneID:117265 KEGG:rno:117265
            UCSC:RGD:621637 InParanoid:P54777 NextBio:620156
            Genevestigator:P54777 GermOnline:ENSRNOG00000016655 Uniprot:P54777
        Length = 978

 Score = 197 (74.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 40/92 (43%), Positives = 60/92 (65%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V+++D+GG    K+EI E ++LPL H EL   +G+    G+LL+GPPGTGKT+LAKAV
Sbjct:   698 PSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRRS-GLLLHGPPGTGKTLLAKAV 755

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A   +  F+ V G E +  Y+G+     +++F
Sbjct:   756 ATECSLTFLSVKGPELINMYVGQSEENVREVF 787

 Score = 36 (17.7 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query:     1 MAASAM-VLDPKPVSEPP 17
             MA + + VL+P P   PP
Sbjct:     1 MALAVLHVLEPFPTETPP 18


>UNIPROTKB|E2RDF7 [details] [associations]
            symbol:PEX6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
            [GO:0042623 "ATPase activity, coupled" evidence=IEA] [GO:0032403
            "protein complex binding" evidence=IEA] [GO:0016561 "protein import
            into peroxisome matrix, translocation" evidence=IEA] [GO:0008022
            "protein C-terminus binding" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0005777 "peroxisome" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005524 GO:GO:0050821 GO:GO:0005777
            GO:GO:0042623 GO:GO:0016561 KO:K13339 CTD:5190 OMA:SWHDVGG
            GeneTree:ENSGT00550000074953 EMBL:AAEX03008332 RefSeq:XP_538926.2
            Ensembl:ENSCAFT00000002738 GeneID:481805 KEGG:cfa:481805
            NextBio:20856540 Uniprot:E2RDF7
        Length = 980

 Score = 197 (74.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 40/92 (43%), Positives = 60/92 (65%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V+++D+GG    K+EI E ++LPL H EL   +G+    G+LL+GPPGTGKT+LAKAV
Sbjct:   700 PSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRRS-GLLLHGPPGTGKTLLAKAV 757

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A   +  F+ V G E +  Y+G+     +++F
Sbjct:   758 ATECSLTFLSVKGPELINMYVGQSEENVREVF 789

 Score = 36 (17.7 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query:     1 MAASAM-VLDPKPVSEPP 17
             MA + + VL+P P   PP
Sbjct:     1 MALAVLRVLEPFPTEAPP 18


>UNIPROTKB|Q13608 [details] [associations]
            symbol:PEX6 "Peroxisome assembly factor 2" species:9606
            "Homo sapiens" [GO:0005778 "peroxisomal membrane" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007031 "peroxisome
            organization" evidence=IMP] [GO:0016887 "ATPase activity"
            evidence=IMP] [GO:0008022 "protein C-terminus binding"
            evidence=IPI] [GO:0005777 "peroxisome" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006625 "protein targeting to
            peroxisome" evidence=IMP] [GO:0032403 "protein complex binding"
            evidence=IDA] [GO:0016561 "protein import into peroxisome matrix,
            translocation" evidence=IMP] [GO:0050821 "protein stabilization"
            evidence=IMP] [GO:0005524 "ATP binding" evidence=IMP] [GO:0042623
            "ATPase activity, coupled" evidence=IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0006200 "ATP catabolic process"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005524 GO:GO:0050821 GO:GO:0005777
            GO:GO:0032403 GO:GO:0005778 eggNOG:COG0464 GO:GO:0042623
            Orphanet:912 TCDB:3.A.20.1.1 Orphanet:772 Orphanet:44 GO:GO:0016561
            HOGENOM:HOG000241031 KO:K13339 EMBL:U56602 EMBL:D83703
            EMBL:AF108098 EMBL:AF108095 EMBL:AF108096 EMBL:AF108097
            EMBL:AB051076 EMBL:BC048331 IPI:IPI00299182 PIR:S71090
            RefSeq:NP_000278.3 UniGene:Hs.656425 ProteinModelPortal:Q13608
            SMR:Q13608 IntAct:Q13608 MINT:MINT-1183928 STRING:Q13608
            PhosphoSite:Q13608 DMDM:12644408 PaxDb:Q13608 PRIDE:Q13608
            Ensembl:ENST00000304611 GeneID:5190 KEGG:hsa:5190 UCSC:uc003otf.3
            CTD:5190 GeneCards:GC06M042978 HGNC:HGNC:8859 HPA:HPA025924
            MIM:601498 MIM:614862 MIM:614863 neXtProt:NX_Q13608
            PharmGKB:PA33201 HOVERGEN:HBG002311 InParanoid:Q13608 OMA:SWHDVGG
            OrthoDB:EOG47WNNP PhylomeDB:Q13608 GenomeRNAi:5190 NextBio:20072
            ArrayExpress:Q13608 Bgee:Q13608 CleanEx:HS_PEX6
            Genevestigator:Q13608 GermOnline:ENSG00000124587 Uniprot:Q13608
        Length = 980

 Score = 197 (74.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 40/92 (43%), Positives = 60/92 (65%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             P V+++D+GG    K+EI E ++LPL H EL   +G+    G+LL+GPPGTGKT+LAKAV
Sbjct:   700 PSVSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRRS-GLLLHGPPGTGKTLLAKAV 757

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             A   +  F+ V G E +  Y+G+     +++F
Sbjct:   758 ATECSLTFLSVKGPELINMYVGQSEENVREVF 789

 Score = 36 (17.7 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query:     1 MAASAM-VLDPKPVSEPP 17
             MA + + VL+P P   PP
Sbjct:     1 MALAVLRVLEPFPTETPP 18


>TAIR|locus:2084163 [details] [associations]
            symbol:CDC48C "cell division cycle 48C" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0009793 "embryo development
            ending in seed dormancy" evidence=NAS] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0000278 "mitotic cell cycle"
            evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
            evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
            [GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
            "protein ubiquitination" evidence=RCA] [GO:0016571 "histone
            methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
            evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
            interference" evidence=RCA] [GO:0035196 "production of miRNAs
            involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
            "post-translational protein modification" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0051301
            GO:GO:0005856 GO:GO:0015031 GO:GO:0007049 eggNOG:COG0464
            HOGENOM:HOG000223225 GO:GO:0017111 EMBL:AC009325 GO:GO:0009524
            EMBL:AY136443 EMBL:BT002135 IPI:IPI00547846 RefSeq:NP_186810.2
            UniGene:At.27731 UniGene:At.63552 ProteinModelPortal:Q9SS94
            SMR:Q9SS94 IntAct:Q9SS94 PaxDb:Q9SS94 PRIDE:Q9SS94
            EnsemblPlants:AT3G01610.1 GeneID:821105 KEGG:ath:AT3G01610
            GeneFarm:1903 TAIR:At3g01610 InParanoid:Q9SS94 KO:K14571
            OMA:REGFTTI PhylomeDB:Q9SS94 ProtClustDB:CLSN2720022
            Genevestigator:Q9SS94 GermOnline:AT3G01610 Uniprot:Q9SS94
        Length = 820

 Score = 206 (77.6 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 38/92 (41%), Positives = 57/92 (61%)

Query:   154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
             PDV ++D+GG D  + +    +  P+   ++YK  G+D   G LLYGPPG GKT++AKA 
Sbjct:   523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAA 582

Query:   214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
             AN   A F+ + G+E + KY+GE  L  + +F
Sbjct:   583 ANEAGANFMHIKGAELLNKYVGESELAIRTLF 614

 Score = 160 (61.4 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 39/139 (28%), Positives = 66/139 (47%)

Query:    97 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV 156
             +GS    N  V  +S   R  L   A++   + +   + +     +  + +   ++ P  
Sbjct:   177 IGSPAEKNVEVETVSNKGRSKL---ATMGARKEAKVSLSLSGATGNGDLEV-EGTKGP-- 230

Query:   157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216
             T+ D GG      E+   V  P+ + E +K+IG+ PP G+L +GPPG GKT LA A+AN 
Sbjct:   231 TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANE 290

Query:   217 TTAAFIRVVGSEFVQKYLG 235
                 F ++  +E +    G
Sbjct:   291 AGVPFYKISATEVISGVSG 309


>UNIPROTKB|F1MAX6 [details] [associations]
            symbol:KATNAL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
            GeneTree:ENSGT00550000074466 EMBL:DAAA02033094 IPI:IPI00824872
            Ensembl:ENSBTAT00000052665 Uniprot:F1MAX6
        Length = 499

 Score = 179 (68.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 53/145 (36%), Positives = 75/145 (51%)

Query:    94 NGIVGSTTGSNYYVRILSTINRELLKPSASVA-LHRHSNALVDVLPPEADSSISLLSQSE 152
             NGI+     +   VR  S + R+ ++   S   + +   A  D    EA     ++S++ 
Sbjct:   154 NGIIQKPLKNAVQVRSDSLVGRKNMQDGTSDGEIPKFDGAAYDKDLVEALER-DIVSRN- 211

Query:   153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP-RGVLLYGPPGTGKTMLAK 211
              P V ++DI   +  K+ +REAV LP+   + +K  GI  P +GVL+ GPPGTGKTMLAK
Sbjct:   212 -PSVHWDDIADLEEAKKLLREAVVLPMWMPDFFK--GIRRPWKGVLMVGPPGTGKTMLAK 268

Query:   212 AVANHTTAAFIRVVGSEFVQKYLGE 236
             AVA      F  V  S    KY GE
Sbjct:   269 AVATECGTTFFNVSSSTLTSKYRGE 293

 Score = 51 (23.0 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query:    38 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQS 78
             ++ +QR  +   +++  VK   + +++ELL   E+VK I S
Sbjct:    33 IQQIQRHCQ--SVRDPAVKGRWQQVRQELLEEYEQVKSIVS 71


>CGD|CAL0000075 [details] [associations]
            symbol:AFG3 species:5476 "Candida albicans" [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005745 "m-AAA complex"
            evidence=IEA] [GO:0097002 "mitochondrial inner boundary membrane"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
            evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
            EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
            ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
            GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
            Uniprot:Q5AJC2
        Length = 795

 Score = 204 (76.9 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 40/93 (43%), Positives = 57/93 (61%)

Query:   143 SSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPP 202
             S   L +Q  +  + + D+ GCD  K+EI E V+     H+ Y+++G   PRG +L GPP
Sbjct:   271 SKAKLFNQENEVKIKFKDVAGCDESKEEIMEFVKFLQDPHK-YEKLGAKIPRGAILSGPP 329

Query:   203 GTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 235
             GTGKT+LAKA A      F+ V GSEFV+ ++G
Sbjct:   330 GTGKTLLAKATAGEAGVPFLSVSGSEFVEMFVG 362


>UNIPROTKB|Q5AJC2 [details] [associations]
            symbol:AFG3 "Putative uncharacterized protein"
            species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
            membrane" evidence=IDA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 CGD:CAL0000075
            GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0008270
            GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465 KO:K08956
            GO:GO:0017111 TIGRFAMs:TIGR01241 MEROPS:M41.002 EMBL:AACQ01000014
            EMBL:AACQ01000013 RefSeq:XP_721627.1 RefSeq:XP_721746.1
            ProteinModelPortal:Q5AJC2 SMR:Q5AJC2 STRING:Q5AJC2 GeneID:3636589
            GeneID:3636771 KEGG:cal:CaO19.1669 KEGG:cal:CaO19.9238
            Uniprot:Q5AJC2
        Length = 795

 Score = 204 (76.9 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 40/93 (43%), Positives = 57/93 (61%)

Query:   143 SSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPP 202
             S   L +Q  +  + + D+ GCD  K+EI E V+     H+ Y+++G   PRG +L GPP
Sbjct:   271 SKAKLFNQENEVKIKFKDVAGCDESKEEIMEFVKFLQDPHK-YEKLGAKIPRGAILSGPP 329

Query:   203 GTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 235
             GTGKT+LAKA A      F+ V GSEFV+ ++G
Sbjct:   330 GTGKTLLAKATAGEAGVPFLSVSGSEFVEMFVG 362


>TIGR_CMR|DET_0391 [details] [associations]
            symbol:DET_0391 "ATP-dependent metalloprotease FtsH"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 EMBL:CP000027 GenomeReviews:CP000027_GR
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 OMA:LEIIAMR MEROPS:M41.021
            RefSeq:YP_181136.1 ProteinModelPortal:Q3Z9G3 SMR:Q3Z9G3
            STRING:Q3Z9G3 GeneID:3230280 KEGG:det:DET0391 PATRIC:21607849
            ProtClustDB:CLSK837509 BioCyc:DETH243164:GJNF-391-MONOMER
            Uniprot:Q3Z9G3
        Length = 608

 Score = 202 (76.2 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 39/88 (44%), Positives = 56/88 (63%)

Query:   148 LSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT 207
             L   +KP +T+ ++ G D  KQE+ E VE  L   E ++ +G   P+G+LL GPPGTGKT
Sbjct:   148 LFNMDKPTITFANVAGVDEAKQEVGEVVEF-LKSREKFQALGARIPKGILLIGPPGTGKT 206

Query:   208 MLAKAVANHTTAAFIRVVGSEFVQKYLG 235
             +LAKA+A      F  + GSEFV+ ++G
Sbjct:   207 LLAKAIAGEAGVPFFSISGSEFVEMFVG 234

WARNING:  HSPs involving 378 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      245       245   0.00099  113 3  11 23  0.49    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  628
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.36u 0.10s 31.46t   Elapsed:  00:00:02
  Total cpu time:  31.38u 0.10s 31.48t   Elapsed:  00:00:02
  Start:  Sat May 11 10:51:24 2013   End:  Sat May 11 10:51:26 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with RPT3 RPT3 RPT3 AT5G58290	protein from Arabidopsis thaliana	1.4e-105
BLAST match view associations BLAST with Rpt3 Rpt3 Rpt3 Regulatory particle triple-A ATPase 3	protein from Drosophila melanogaster	2.5e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	3.1e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Bos taurus	3.1e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 Uncharacterized protein	protein from Canis lupus familiaris	3.1e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Homo sapiens	3.1e-90
BLAST match view associations BLAST with PSMC4 PSMC4 PSMC4 26S protease regulatory subunit 6B	protein from Macaca fascicularis	3.1e-90
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein from Mus musculus	3.1e-90
BLAST match view associations BLAST with Psmc4 Psmc4 Psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene from Rattus norvegicus	3.1e-90
BLAST match view associations BLAST with psmc4 psmc4 psmc4 proteasome (prosome, macropain) 26S subunit, ATPase, 4	gene_product from Danio rerio	3.1e-90
BLAST match view associations BLAST with Rpt3R Rpt3R Rpt3R Regulatory particle triple-A ATPase 3-related	protein from Drosophila melanogaster	3.1e-83
BLAST match view associations BLAST with PR26 PR26 PR26	gene_product from Candida albicans	1.3e-82
BLAST match view associations BLAST with PR26 PR26 PR26 Likely 26S proteasome regulatory particle ATPase Rpt3p	protein from Candida albicans SC5314	1.3e-82
BLAST match view associations BLAST with psmC4 psmC4 psmC4 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	1.7e-82
BLAST match view associations BLAST with RPT3 RPT3 RPT3 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.8e-80
BLAST match view associations BLAST with rpt-3 rpt-3 rpt-3	gene from Caenorhabditis elegans	7.6e-80
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26s proteasome aaa-ATPase subunit Rpt3, putative	gene from Plasmodium falciparum	7.3e-75
BLAST match view associations BLAST with PFD0665c PFD0665c PFD0665c 26S proteasome AAA-ATPase subunit RPT3, putative	protein from Plasmodium falciparum 3D7	7.3e-75
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	gene from Plasmodium falciparum	3.3e-47
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	protein from Plasmodium falciparum 3D7	3.3e-47
BLAST match view associations BLAST with RPT2 RPT2 RPT2	gene_product from Candida albicans	4.2e-47
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Proteasome (Prosome, macropain) 26S subunit, ATPase, 1	protein from Bos taurus	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	1.1e-46
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Sus scrofa	1.1e-46
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 protease (prosome, macropain) 26S subunit, ATPase 1	protein from Mus musculus	1.1e-46
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1	gene from Rattus norvegicus	1.1e-46
BLAST match view associations BLAST with RPT2 RPT2 RPT2 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	1.1e-46
BLAST match view associations BLAST with RPT2b RPT2b RPT2b regulatory particle AAA-ATPase 2b	protein from Arabidopsis thaliana	1.1e-46
BLAST match view associations BLAST with RPT2a RPT2a RPT2a regulatory particle AAA-ATPase 2A	protein from Arabidopsis thaliana	1.1e-46
BLAST match view associations BLAST with Rpt2 Rpt2 Rpt2 Regulatory particle triple-A ATPase 2	protein from Drosophila melanogaster	1.8e-46
BLAST match view associations BLAST with psmc1a psmc1a psmc1a proteasome (prosome, macropain) 26S subunit, ATPase, 1a	gene_product from Danio rerio	3.8e-46
BLAST match view associations BLAST with rpt-2 rpt-2 rpt-2	gene from Caenorhabditis elegans	1.3e-45
BLAST match view associations BLAST with psmc1b psmc1b psmc1b proteasome (prosome, macropain) 26S subunit, ATPase, 1b	gene_product from Danio rerio	1.6e-45
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	2.7e-45
BLAST match view associations BLAST with psmC1 psmC1 psmC1 TAT binding protein alpha	gene from Dictyostelium discoideum	4.5e-43
BLAST match view associations BLAST with pan pan pan Proteasome-activating nucleotidase	protein from Methanocaldococcus jannaschii DSM 2661	4.0e-42
BLAST match view associations BLAST with Rpt6R Rpt6R Rpt6R Regulatory particle triple-A ATPase 6-related	protein from Drosophila melanogaster	2.7e-36
BLAST match view associations BLAST with J9NWB0 J9NWB0 J9NWB0 Uncharacterized protein	protein from Canis lupus familiaris	1.2e-35
BLAST match view associations BLAST with RPT6A RPT6A RPT6A regulatory particle triple-A ATPase 6A	protein from Arabidopsis thaliana	1.9e-35
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4	gene from Caenorhabditis elegans	1.9e-35
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4 Probable 26S protease regulatory subunit 10B	protein from Caenorhabditis elegans	1.9e-35
BLAST match view associations BLAST with AT5G20000 AT5G20000 AT5G20000	protein from Arabidopsis thaliana	2.4e-35
BLAST match view associations BLAST with F56F11.4 F56F11.4 F56F11.4	gene from Caenorhabditis elegans	3.1e-35
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5	gene from Caenorhabditis elegans	6.3e-35
BLAST match view associations BLAST with rpt-5 rpt-5 rpt-5 Protein RPT-5	protein from Caenorhabditis elegans	6.3e-35
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Gallus gallus	6.5e-35
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Gallus gallus	6.5e-35
BLAST match view associations BLAST with RPT5B RPT5B RPT5B 26S proteasome AAA-ATPase subunit RPT5B	protein from Arabidopsis thaliana	1.3e-34
BLAST match view associations BLAST with psmc6 psmc6 psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	gene_product from Danio rerio	1.7e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Bos taurus	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Bos taurus	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Canis lupus familiaris	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Homo sapiens	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Homo sapiens	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Sus scrofa	2.2e-34
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Ictidomys tridecemlineatus	2.2e-34
BLAST match view associations BLAST with Psmc6 Psmc6 Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein from Mus musculus	2.2e-34
BLAST match view associations BLAST with Psmc6 Psmc6 Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	gene from Rattus norvegicus	2.2e-34
BLAST match view associations BLAST with rpt-6 rpt-6 rpt-6	gene from Caenorhabditis elegans	2.2e-34
BLAST match view associations BLAST with C10G11.8 C10G11.8 C10G11.8	gene from Caenorhabditis elegans	4.6e-34
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Canis lupus familiaris	7.1e-34
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c tat-binding protein homolog	gene from Plasmodium falciparum	7.4e-34
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c Tat-binding protein homolog	protein from Plasmodium falciparum 3D7	7.4e-34
BLAST match view associations BLAST with RPT6 RPT6 RPT6	gene_product from Candida albicans	1.2e-33
BLAST match view associations BLAST with Rpt4R Rpt4R Rpt4R Regulatory particle triple-A ATPase 4-related	protein from Drosophila melanogaster	1.5e-33
BLAST match view associations BLAST with OsRPT4 OsRPT4 OsRPT4 26S proteasome regulatory particle triple-A ATPase subunit4	protein from Oryza sativa Japonica Group	2.0e-33
BLAST match view associations BLAST with RPT1A RPT1A RPT1A regulatory particle triple-A 1A	protein from Arabidopsis thaliana	2.0e-33
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	protein from Mus musculus	2.4e-33
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 proteasome (prosome, macropain) 26S subunit, ATPase 3	gene from Rattus norvegicus	2.4e-33
BLAST match view associations BLAST with Psmc3 Psmc3 Psmc3 Proteasome (Prosome, macropain) 26S subunit, ATPase 3, isoform CRA_a	protein from Rattus norvegicus	2.4e-33
BLAST match view associations BLAST with GSTENG00035021001 GSTENG00035021001 GSTENG00035021001 Chromosome 2 SCAF15106, whole genome shotgun sequence.	protein from Tetraodon nigroviridis	3.2e-33
BLAST match view associations BLAST with psmC5 psmC5 psmC5 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	4.1e-33
BLAST match view associations BLAST with psmc5 psmc5 psmc5 Putative uncharacterized protein MGC75584	protein from Xenopus (Silurana) tropicalis	4.1e-33
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 Uncharacterized protein	protein from Sus scrofa	4.9e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 Uncharacterized protein	protein from Gallus gallus	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Bos taurus	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	5.2e-33
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Sus scrofa	5.2e-33
BLAST match view associations BLAST with Q6AZU7 Q6AZU7 Q6AZU7 Putative uncharacterized protein	protein from Xenopus laevis	5.2e-33
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5	protein from Mus musculus	5.2e-33
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene from Rattus norvegicus	5.2e-33
BLAST match view associations BLAST with psmc5 psmc5 psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene_product from Danio rerio	5.2e-33
BLAST match view associations BLAST with PSMC3 PSMC3 PSMC3 26S protease regulatory subunit 6A	protein from Homo sapiens	6.2e-33
BLAST match view associations BLAST with RPT1 RPT1 RPT1	gene_product from Candida albicans	6.7e-33
BLAST match view associations BLAST with psmC2 psmC2 psmC2 26S proteasome ATPase 2 subunit	gene from Dictyostelium discoideum	6.7e-33
BLAST match view associations BLAST with Rpt4 Rpt4 Rpt4 Regulatory particle triple-A ATPase 4	protein from Drosophila melanogaster	1.1e-32