BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025979
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 154/204 (75%), Positives = 181/204 (88%)
Query: 33 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ 92
D+Y +LK L+++ E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +DQ
Sbjct: 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQ 105
Query: 93 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSE 152
N GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++ ++E
Sbjct: 106 NTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENE 165
Query: 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 212
KPDVTY D+GG D+QKQEIREAVELPL +LY+QIGIDPPRGVLLYGPPGTGKTML KA
Sbjct: 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225
Query: 213 VANHTTAAFIRVVGSEFVQKYLGE 236
VAN T AAFIRV GSEFV KYLGE
Sbjct: 226 VANSTKAAFIRVNGSEFVHKYLGE 249
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 190 bits (482), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 154/230 (66%), Gaps = 14/230 (6%)
Query: 18 PSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKR 75
PSTR L +L ++R + + ++EE+V + + K +++ +++++
Sbjct: 51 PSTRCKL------------KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEE 98
Query: 76 IQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVD 135
I+ PL IG E++D ++ IV S T +YYV ILS +++ELL+P SV LH + ++V
Sbjct: 99 IRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVG 158
Query: 136 VLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG 195
VL +AD +S++ + P +Y+DIGG + Q QEI+E+VELPLTH ELY+++GI PP+G
Sbjct: 159 VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
V+LYG PGTGKT+LAKAVAN T+A F+R+VGSE +QKYLG+ +QIF
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIF 268
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 84/109 (77%)
Query: 137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
LPP D S+++++ EKPDVTY+D+GGC Q +++RE VELPL E + +GIDPP+G+
Sbjct: 187 LPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGI 246
Query: 197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
LLYGPPGTGKT+ A+AVAN T A FIRV+GSE VQKY+GE +++F
Sbjct: 247 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF 295
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 9/220 (4%)
Query: 26 EQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQ 85
EQ E +L +++S + ++ Q + D+ + +K EL + +Q +G+
Sbjct: 24 EQKIQETEL--KIRSKTENVRRLEAQRNALNDKVRFIKDEL-------RLLQEPGSYVGE 74
Query: 86 FMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSI 145
+++V +V Y V + IN + LK S V L S L VL +AD +
Sbjct: 75 VIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLV 134
Query: 146 SLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTG 205
SL+ + PD TY+ +GG Q +EI+E +ELP+ H EL++ +GI P+GV+LYGPPGTG
Sbjct: 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTG 194
Query: 206 KTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
KT+LA+AVA+HT FIRV G+E VQKY+GE +++F
Sbjct: 195 KTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELF 234
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 118/186 (63%)
Query: 60 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK 119
++L++ + + ++K +QS+ +IG+ M+ + + IV +++G Y V + ++++R LK
Sbjct: 82 RDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLK 141
Query: 120 PSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPL 179
V L + ++ +LP E D + ++ E+ ++T++ IGG Q +E+RE +ELPL
Sbjct: 142 KGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPL 201
Query: 180 THHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWL 239
+ E+++++GI PP+GVLLYGPPGTGKT+LAKAVA A FI S V KY+GE
Sbjct: 202 KNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESAR 261
Query: 240 KHKQIF 245
+++F
Sbjct: 262 IIREMF 267
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 75/95 (78%)
Query: 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
E+P+V Y DIGG + Q QEIRE VELPL H EL++++GI+PP+G+LLYGPPGTGKT+LA
Sbjct: 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68
Query: 211 KAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
KAVA T A FIRVVGSE V+K++GE K IF
Sbjct: 69 KAVATETNATFIRVVGSELVKKFIGEGASLVKDIF 103
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 122/230 (53%), Gaps = 26/230 (11%)
Query: 33 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ 92
+L +R K L ++ + + + E + ++ +E++K + +P ++ +E++D
Sbjct: 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDM 88
Query: 93 NN--------------------------GIVGSTTGSNYYVRILSTINRELLKPSASVAL 126
N +V +++ ++ ++ ++ + LKP+ V +
Sbjct: 89 NEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGV 148
Query: 127 HRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYK 186
++ S ++D LP E DS + + EKP TY+D+GG D Q +E+ EA+ LP+ + +K
Sbjct: 149 NKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFK 208
Query: 187 QIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
+GI P+G L+YGPPGTGKT+LA+A A T A F+++ + VQ Y+GE
Sbjct: 209 DMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 63/91 (69%)
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
+V Y+DIGGC Q +I+E VELPL H L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
N T A F + G E + K GE ++ F
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAF 290
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%)
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E P VT+ DIGG + K+E++E V+ P+ H + + + G+ P +GVL YGPPG GKT+LAK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
A+AN A FI + G E + + GE ++IF
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIF 563
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 63/91 (69%)
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
+V Y+DIGGC Q +I+E VELPL H L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
N T A F + G E + K GE ++ F
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 63/91 (69%)
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
+V Y+DIGGC Q +I+E VELPL H L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
N T A F + G E + K GE ++ F
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 63/91 (69%)
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
+V Y+DIGGC Q +I+E VELPL H L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
N T A F + G E + K GE ++ F
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%)
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
+V Y+D+GGC Q +I+E VELPL H L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
N T A F + G E + K GE ++ F
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAF 290
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%)
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E P VT+ DIGG + K+E++E V+ P+ H + + + G+ P +GVL YGPPG GKT+LAK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
A+AN A FI + G E + + GE ++IF
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIF 563
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%)
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
+V Y+D+GGC Q +I+E VELPL H L+K IG+ PPRG+LLYGPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
N T A F + G E + K GE ++ F
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%)
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E P VT+ DIGG + K+E++E V+ P+ H + + + G+ P +GVL YGPPG GKT+LAK
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67
Query: 212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
A+AN A FI + G E + + GE ++IF
Sbjct: 68 AIANECQANFISIKGPELLTMWFGESEANVREIF 101
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208
S SEKP+V + D+ G + K+ ++EAV LP+ L+K P G+LLYGPPGTGK+
Sbjct: 17 SLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSY 75
Query: 209 LAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
LAKAVA + F V S+ V K++GE KQ+F
Sbjct: 76 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLF 112
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
SEKP+V + D+ G + K+ ++EAV LP+ L+K P G+LLYGPPGTGK+ LA
Sbjct: 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLA 101
Query: 211 KAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
KAVA + F V S+ V K++GE KQ+F
Sbjct: 102 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLF 136
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
SEKP+V + D+ G + K+ ++EAV LP+ L+K P G+LLYGPPGTGK+ LA
Sbjct: 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLA 68
Query: 211 KAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
KAVA + F V S+ V K++GE KQ+F
Sbjct: 69 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLF 103
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
SEKP+V + D+ G + K+ ++EAV LP+ L+K P G+LLYGPPGTGK+ LA
Sbjct: 28 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLA 86
Query: 211 KAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
KAVA + F V S+ V K++GE KQ+F
Sbjct: 87 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLF 121
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P+VT+ DIG + ++E+ A+ P+ + + +K +G+ P GVLL GPPG GKT+LAKAV
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
AN + FI V G E + Y+GE +Q+F
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVF 96
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 119 KPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD----VTYNDIGGCDIQKQEIREA 174
KPS R L + DS+++ L +E D V ++DI G D+ KQ ++E
Sbjct: 73 KPSTPTTATRKKKDLKNFR--NVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEI 130
Query: 175 VELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 234
V LP EL+ + P RG+LL+GPPG GKTMLAKAVA + A F + + KY+
Sbjct: 131 VILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189
Query: 235 GE 236
GE
Sbjct: 190 GE 191
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
+EKP+V + D+ G + K+E+ E V+ L + E Y +G P+GVLL GPPGTGKT+L
Sbjct: 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLL 60
Query: 210 AKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
AKAVA F + GS F++ ++G + + +F
Sbjct: 61 AKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF 96
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216
T+ D+ GCD K+E+ E VE L ++++G P+GVL+ GPPGTGKT+LAKA+A
Sbjct: 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 217 TTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
F + GS+FV+ ++G + + +F
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMF 97
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
VT+ D+GG + +E++E VE L + +IG P+G+LL GPPGTGKT+LA+AVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 216 HTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
F + GS+FV+ ++G + + +F
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLF 101
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
V + DI G D+ KQ ++E V LP EL+ + P +G+LL+GPPG GKT+LA+AVA
Sbjct: 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVAT 76
Query: 216 HTTAAFIRVVGSEFVQKYLGE 236
+A F+ + + KY+G+
Sbjct: 77 ECSATFLNISAASLTSKYVGD 97
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
VT+ D+GG + +E++E VE L + +IG P+G+LL GPPGTG T+LA+AVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 216 HTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
F + GS+FV+ ++G + + +F
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLF 101
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E+P+V ++D+ G + K+ ++EAV LP+ L+ P RG+LL+GPPGTGK+ LAK
Sbjct: 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAK 185
Query: 212 AVANH-TTAAFIRVVGSEFVQKYLGE 236
AVA + F + S+ V K+LGE
Sbjct: 186 AVATEANNSTFFSISSSDLVSKWLGE 211
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E+P+V ++D+ G + K+ ++EAV LP+ L+ P RG+LL+GPPGTGK+ LAK
Sbjct: 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAK 63
Query: 212 AVANH-TTAAFIRVVGSEFVQKYLGE 236
AVA + F + S+ V K+LGE
Sbjct: 64 AVATEANNSTFFSISSSDLVSKWLGE 89
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P V + DI G + K I+E V P+ +++ + PP+G+LL+GPPGTGKT++ K +
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCI 137
Query: 214 ANHTTAAFIRVVGSEFVQKYLGE 236
A+ + A F + S K++GE
Sbjct: 138 ASQSGATFFSISASSLTSKWVGE 160
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
V++ D+ G K E+RE V+ L E + Q+G P+G LL GPPG GKT+LAKAVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 216 HTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
F+ + G+EFV+ G + + +F
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLF 91
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 141 ADSSISLLSQ-----SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG 195
+DS+ S +E P VT+ D+ G + K+E++E VE L + + ++G P+G
Sbjct: 17 SDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKG 75
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
VLL GPPG GKT LA+AVA FI GS+FV+ ++G + + +F
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 125
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 141 ADSSISLLSQ-----SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG 195
+DS+ S +E P VT+ D+ G + K+E++E VE L + + ++G P+G
Sbjct: 8 SDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKG 66
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
VLL GPPG GKT LA+AVA FI GS+FV+ ++G + + +F
Sbjct: 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 116
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 141 ADSSISLLSQ-----SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG 195
+DS+ S +E P VT+ D+ G + K+E++E VE L + + ++G P+G
Sbjct: 17 SDSAFSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKG 75
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
VLL GPPG GKT LA+AVA FI GS+FV+ ++G + + +F
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 125
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
+E P VT+ D+ G + K+E++E VE L + + ++G P+GVLL GPPG GKT LA
Sbjct: 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66
Query: 211 KAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
+AVA FI GS+FV+ ++G + + +F
Sbjct: 67 RAVAGEARVPFITASGSDFVEMFVGVGAARVRDLF 101
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 70 QEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRH 129
+ EV R++S PL++G ++++ +V S+TG + V IN E LKP A VAL++
Sbjct: 27 ENEVARLRSAPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQ 86
Query: 130 SNALVDVLPPEAD 142
+ A+V+VLP D
Sbjct: 87 TLAIVNVLPTSKD 99
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 70 QEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRH 129
+ EV R++S PL++G ++++ +V S+TG + V IN E LKP A VAL++
Sbjct: 27 ENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQ 86
Query: 130 SNALVDVLPPEAD 142
+ A+V+VLP D
Sbjct: 87 TLAIVNVLPTSKD 99
>pdb|3H43|A Chain A, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|B Chain B, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|C Chain C, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|D Chain D, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|E Chain E, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|F Chain F, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|G Chain G, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|H Chain H, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|I Chain I, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|J Chain J, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|K Chain K, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|L Chain L, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
Length = 85
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 65 ELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASV 124
E+LR E+ R + PL++G ++ V + +V S+TG ++ V + +N + L P V
Sbjct: 5 EILR--RELDRXRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRV 62
Query: 125 ALHRHSNALVDVLP 138
L++ + +VDVLP
Sbjct: 63 CLNQQTLTVVDVLP 76
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGE 236
P+ +L+ GP G GKT +A+ +A A FI+V ++F + Y+G+
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 93
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGE 236
P+ +L+ GP G GKT +A+ +A A FI+V ++F + Y+G+
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 100
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGE 236
P+ +L+ GP G GKT +A+ +A A FI+V ++F + Y+G+
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGE 236
P+ +L+ GP G GKT +A+ +A A FI+V ++F + Y+G+
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 194 RGVLLYGPPGTGKTMLAKAVANH--TTAAFIRVVGSE 228
R VLL GPPGTGKT LA A+A + F +VGSE
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGE 236
P+ +L+ GP G GKT +A+ +A A FI+V ++F + Y+G+
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 194 RGVLLYGPPGTGKTMLAKAVANH--TTAAFIRVVGSE 228
R VLL GPPGTGKT LA A+A + F VGSE
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSE 114
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGE 236
P+ +L GP G GKT +A+ +A A FI+V ++F + Y+G+
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 179 LTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229
+ H +++ + ++ RG++L GPPG+GKTM+ + ++ VVG F
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRN--SSLYDVVGINF 1082
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 179 LTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229
+ H +++ + ++ RG++L GPPG+GKTM+ + ++ VVG F
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRN--SSLYDVVGINF 1301
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRV 224
++L+GPPGTGKT LA+ +A + A R+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI 81
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRV 224
+ L GPPG GKT LAK++A F+R+
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232
+P +LL+GPPG GKT LA +A H +RV ++K
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIA-HELGVNLRVTSGPAIEK 76
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232
+P +LL+GPPG GKT LA +A H +RV ++K
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIA-HELGVNLRVTSGPAIEK 76
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232
+P +LL+GPPG GKT LA +A H +RV ++K
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIA-HELGVNLRVTSGPAIEK 76
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 191 DPPRGV---LLYGPPGTGKTMLAKAVAN---HTTAAFIRVVGSEFVQKY 233
DP R + L GP G GKT LAK +A T A IR+ +E+++K+
Sbjct: 583 DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225
P VLL GPP +GKT LA +A + FI++
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 95
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225
P VLL GPP +GKT LA +A + FI++
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 191 DPPRGV---LLYGPPGTGKTMLAKAVANHTTA---AFIRVVGSEFVQKY 233
DP R + + GP G GKT LA+A+A + IR+ SE+++K+
Sbjct: 516 DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH 564
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 37/121 (30%)
Query: 45 LEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSN 104
+ +D EEY + E + A E++ R +P+V+G G++
Sbjct: 62 MNHVDWSEEYY---SHRFETECMNAIEDIHRRGKIPIVVG-----------------GTH 101
Query: 105 YYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGC 164
YY++ L N+ + S+ L R +D+L +S PDV YN + C
Sbjct: 102 YYLQTL--FNKRVDTKSSERKLTRKQ---LDIL------------ESTDPDVIYNTLVKC 144
Query: 165 D 165
D
Sbjct: 145 D 145
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 185 YKQIGIDPP---RGVLLYGPPGTGKTMLAKAVA 214
+K G D R +LYGPPG GKT A VA
Sbjct: 66 FKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 194 RGVLLYGPPGTGKTMLAKAVA 214
R VLL G PGTGK+ML +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 196 VLLYGPPGTGKTMLAKAVANH 216
+LL GP G+GKT++A+ +A H
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKH 95
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 191 DPPRGV---LLYGPPGTGKTMLAKAVAN---HTTAAFIRVVGSEFVQKY 233
DP R + L GP G GKT LAK +A T A IR+ +E+++K+
Sbjct: 39 DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 87
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 177 LPLTHHELYKQIGIDPPRG----VLLYGP-PGTGKTMLAKAVANHTTAAFIRVVGSE 228
LP E +K I +G ++L+ P PGTGKT +AKA+ + A + V GS+
Sbjct: 30 LPAFDKETFKSI---TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233
++ P LL G PG+GKT L A+ T I + F Q++
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 73
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRV 224
+LL G PG GKT L K +A+ + +I V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRV 224
+LL G PG GKT L K +A+ + +I V
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 191 DPPRGV---LLYGPPGTGKTMLAKAVAN---HTTAAFIRVVGSEFVQKY 233
DP R + L GP G GKT LAK +A T A IR+ +E+ +K+
Sbjct: 42 DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEKH 90
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 30 DEDDLYSRLKSLQRQLEF-IDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
D + L ++ SL + LE I +QE++VKDEQ +++++ QEE+K +
Sbjct: 397 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKEL 444
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 18/64 (28%)
Query: 184 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE---VWLK 240
LY++ + P + +YG GTGKT A ++ V S+ +K+LG+ V++
Sbjct: 39 LYRE---EKPNNIFIYGLTGTGKT------------AVVKFVLSKLHKKFLGKFKHVYIN 83
Query: 241 HKQI 244
+QI
Sbjct: 84 TRQI 87
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227
+ +YG GTGKT L +A N RV+ S
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 196 VLLYGPPGTGKTMLAKAVAN 215
VLL GPPG GKT LA +A+
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 196 VLLYGPPGTGKTMLAKAVAN 215
VLL GPPG GKT LA +A+
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 196 VLLYGPPGTGKTMLAKAVAN 215
VLL GPPG GKT LA +A+
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227
+ +YG GTGKT L +A N RV+ S
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 70
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 196 VLLYGPPGTGKTMLAKAVAN 215
VLL GPPG GKT LA +A+
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 196 VLLYGPPGTGKTMLAKAVAN 215
VLL GPPG GKT LA +A+
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227
+ +YG GTGKT L +A N RV+ S
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 190 IDPPRGV--LLYGPPGTGKTMLAKAVA 214
++ P+G+ L+ G PGTGKT +A+ +A
Sbjct: 5 MEQPKGINILITGTPGTGKTSMAEMIA 31
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 194 RGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEF 229
R VL+ G PGTGKT +A +A F + GSE
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 30 DEDDLYSRLKSLQRQLEF-IDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
D + L ++ SL + LE I +QE++VKDEQ +++++ QEE+K +
Sbjct: 275 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKEL 322
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 30 DEDDLYSRLKSLQRQLEF-IDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
D + L ++ SL + LE I +QE++VKDEQ +++++ QEE+K +
Sbjct: 279 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKEL 326
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 30 DEDDLYSRLKSLQRQLEF-IDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
D + L ++ SL + LE I +QE++VKDEQ +++++ QEE+K +
Sbjct: 227 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKEL 274
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 30 DEDDLYSRLKSLQRQLEF-IDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
D + L ++ SL + LE I +QE++VKDEQ +++++ QEE+K +
Sbjct: 226 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKEL 273
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 30 DEDDLYSRLKSLQRQLEF-IDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
D + L ++ SL + LE I +QE++VKDEQ +++++ QEE+K +
Sbjct: 226 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKEL 273
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 30 DEDDLYSRLKSLQRQLEF-IDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
D + L ++ SL + LE I +QE++VKDEQ +++++ QEE+K +
Sbjct: 226 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKEL 273
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 30 DEDDLYSRLKSLQRQLEF-IDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
D + L ++ SL + LE I +QE++VKDEQ +++++ QEE+K +
Sbjct: 226 DFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKEL 273
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 196 VLLYGPPGTGKTMLAKAVA 214
+L YGPPGTGKT A+A
Sbjct: 49 LLFYGPPGTGKTSTIVALA 67
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLGE 236
+LL GP G+GKT+LA+ +A F + + Y+GE
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLGE 236
+LL GP G+GKT+LA+ +A F + + Y+GE
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 12 PVSEPPPSTRSDLTEQWSD-------------EDDLYSRLKSL-QRQLEFIDIQEEYVKD 57
P++EP P + +++ D +D+ + ++ L +R LEF+ + Y K
Sbjct: 232 PINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQ 291
Query: 58 EQKNLKRELLRAQEEVKRIQSVPLVI 83
++ LK ++ +E + ++ + +++
Sbjct: 292 LREKLKTAKIKVKENIDALEELKILV 317
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 194 RGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEF 229
R VL+ G PGTGKT +A A F + GSE
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEI 123
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 196 VLLYGPPGTGKTMLAKAVAN 215
VLL GPPG G+T LA +A+
Sbjct: 54 VLLAGPPGLGRTTLAHIIAS 73
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 196 VLLYGPPGTGKT 207
+L YGPPGTGKT
Sbjct: 61 MLFYGPPGTGKT 72
>pdb|1QZ4|A Chain A, Structure Of Ycfc Protein Of Unknown Function Escherichia
Coli
pdb|1SDI|A Chain A, 1.65 A Structure Of Escherichia Coli Ycfc Gene Product
Length = 213
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 32 DDLYSRLKSLQRQLEFIDIQEE 53
D L +R+ LQRQLE D+Q E
Sbjct: 107 DTLGNRINGLQRQLEHFDLQSE 128
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 221
+P R V++ G G+GKT +A VA+ T F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|1JYT|A Chain A, Solution Structure Of Olfactory Marker Protein From Rat
pdb|1ZRI|A Chain A, Noe-Based Solution Structure With Dipolar Coupling
Restraints Of Rat Omp (Olfactory Marker Protein)
Length = 163
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 56 KDEQKNLKRELLRAQEEVKR---IQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILST 112
+ E+K +LLR E V R IQ L + ++D+ + + T N+ + +
Sbjct: 35 RGEKKQDGEKLLRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDLTNL 94
Query: 113 INRELLKPSASVALHRHSNAL 133
+ R+LL P+A S+A+
Sbjct: 95 MTRQLLDPAAIFWRKEDSDAM 115
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 197 LLYGPPGTGKTMLAKAVANHTT 218
L+ GPPGTGKT+ + + H +
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLS 400
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 197 LLYGPPGTGKTMLAKAVANH 216
L+ GPPGTGKT+ + + H
Sbjct: 375 LIQGPPGTGKTVTSATIVYH 394
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 197 LLYGPPGTGKTMLAKAVANH 216
L+ GPPGTGKT+ + + H
Sbjct: 199 LIQGPPGTGKTVTSATIVYH 218
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 197 LLYGPPGTGKTMLAKAVANH 216
L+ GPPGTGKT+ + + H
Sbjct: 198 LIQGPPGTGKTVTSATIVYH 217
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 2 AASAMVLDPK----------PVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEF 47
A A+++DPK + P + ++ QW EDDL +R+ +L+ +L+
Sbjct: 213 AGKAVLVDPKGDDWARYRGASLITPNRAELREVVGQWKSEDDLRARVANLRAELDI 268
>pdb|4E84|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda
pdb|4E84|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda
Length = 352
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 2 AASAMVLDPK----------PVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEF 47
A A+++DPK + P + ++ QW EDDL +R+ +L+ +L+
Sbjct: 213 AGKAVLVDPKGDDWARYRGASLITPNRAELREVVGQWKSEDDLRARVANLRAELDI 268
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTA 219
+ P LLYG GTGKT +A+ V A
Sbjct: 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 133 LVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLT 180
++DVL EA I L + PD+ Y++ G + +R V L LT
Sbjct: 271 VLDVLEAEATEDIHKLGAVDVPDLVYSEAGPVALWLARVRWLVILILT 318
>pdb|2NR6|D Chain D, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|F Chain F, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 213
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKH 241
IDP G YGP GK + +++T + + SE Y W++
Sbjct: 51 IDPANGNTRYGPKFLGKATITADTSSNTAYLHLNSLTSEDTAVYFCARWVRQ 102
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/86 (17%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 12 PVSEPPPSTRSDLTEQWSD-------------EDDLYSRLKSL-QRQLEFIDIQEEYVKD 57
P++EP P + +++ D +D+ + ++ L +R +EF+ + Y +
Sbjct: 239 PINEPAPGRKKSQIQEYVDYNGGAGVQHIALRTEDIITTIRHLRERGMEFLAVPSSYYRL 298
Query: 58 EQKNLKRELLRAQEEVKRIQSVPLVI 83
++NLK ++ +E + ++ + +++
Sbjct: 299 LRENLKTSKIQVKENMDVLEELKILV 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,537,011
Number of Sequences: 62578
Number of extensions: 301253
Number of successful extensions: 1014
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 146
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)