BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025979
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/235 (88%), Positives = 219/235 (93%), Gaps = 7/235 (2%)
Query: 2 AASAMVLDPKPVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKN 61
A ++MVLDPK ++ + + +DE+DLY RLKSL+RQLEF DIQEEYVKDEQKN
Sbjct: 5 AVASMVLDPK-------ASPALMDLSTADEEDLYGRLKSLERQLEFTDIQEEYVKDEQKN 57
Query: 62 LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPS 121
LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPS
Sbjct: 58 LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPS 117
Query: 122 ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTH 181
ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV+YNDIGGCDIQKQEIREAVELPLTH
Sbjct: 118 ASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTH 177
Query: 182 HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE
Sbjct: 178 HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/237 (89%), Positives = 223/237 (94%), Gaps = 4/237 (1%)
Query: 3 ASAMVLDPKPVSEPPPSTR--SDLTEQWSD-EDDLYSRLKSLQRQLEFIDIQEEYVKDEQ 59
A+AMVLDPKP +E P+TR + +T+ SD EDDLY+RLKSLQRQLEFI+IQEEYVKDE
Sbjct: 2 ATAMVLDPKP-AEKLPATRPETSITDVPSDGEDDLYARLKSLQRQLEFIEIQEEYVKDEL 60
Query: 60 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK 119
KNL+RE LRAQEEVKRIQSVPLVIGQFMEM+DQNN IVGSTTGSNYYVRILSTINRELLK
Sbjct: 61 KNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLK 120
Query: 120 PSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPL 179
PSASV L RHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPL
Sbjct: 121 PSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPL 180
Query: 180 THHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
THHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct: 181 THHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 237
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/240 (88%), Positives = 220/240 (91%), Gaps = 9/240 (3%)
Query: 3 ASAMVLDPKPVSEP------PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVK 56
A+ MVLDPKP S P P +T S T+ EDDLY+RLK+L RQ+EFIDIQEEYVK
Sbjct: 2 AATMVLDPKPSSTPPPTLPNPYTTDSQSTDS---EDDLYTRLKTLDRQIEFIDIQEEYVK 58
Query: 57 DEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRE 116
DE KNLKRE LR+QEEVKRIQSVPLVIGQFMEM+DQNNGIVGSTTGSNYYVRILSTINRE
Sbjct: 59 DELKNLKREQLRSQEEVKRIQSVPLVIGQFMEMIDQNNGIVGSTTGSNYYVRILSTINRE 118
Query: 117 LLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVE 176
LLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVE
Sbjct: 119 LLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVE 178
Query: 177 LPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
LPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE
Sbjct: 179 LPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 238
>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
PE=2 SV=1
Length = 418
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/220 (79%), Positives = 196/220 (89%)
Query: 17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
P + S L + D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct: 23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82
Query: 77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
QS+PLVIGQF+E VDQN IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct: 83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142
Query: 137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
LPPEADSSI +L+ +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202
Query: 197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct: 203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
SV=2
Length = 418
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/220 (79%), Positives = 196/220 (89%)
Query: 17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
P + S L + D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct: 23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82
Query: 77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
QS+PLVIGQF+E VDQN IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct: 83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142
Query: 137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
LPPEADSSI +L+ +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202
Query: 197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct: 203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242
>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
Length = 418
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/220 (79%), Positives = 196/220 (89%)
Query: 17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
P + S L + D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct: 23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82
Query: 77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
QS+PLVIGQF+E VDQN IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct: 83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142
Query: 137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
LPPEADSSI +L+ +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202
Query: 197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct: 203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
PE=1 SV=1
Length = 418
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/220 (79%), Positives = 196/220 (89%)
Query: 17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
P + S L + D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct: 23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82
Query: 77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
QS+PLVIGQF+E VDQN IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct: 83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142
Query: 137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
LPPEADSSI +L+ +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202
Query: 197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct: 203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
SV=2
Length = 418
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/220 (79%), Positives = 196/220 (89%)
Query: 17 PPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
P + S L + D +DLYSR K LQ++LEF+++QEEY+KDEQKNLK+E L AQEEVKRI
Sbjct: 23 PQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRI 82
Query: 77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
QS+PLVIGQF+E VDQN IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDV
Sbjct: 83 QSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDV 142
Query: 137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
LPPEADSSI +L+ +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGV
Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGV 202
Query: 197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
L+YGPPG GKTMLAKAVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct: 203 LMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 242
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 360 bits (923), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 177/230 (76%), Positives = 198/230 (86%), Gaps = 5/230 (2%)
Query: 7 VLDPKPVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKREL 66
V D K + P T +L + +DLY++ K LQR LEF+++QEEY+KDEQ+NLK+E
Sbjct: 15 VTDAKGLPFAGPQTFDEL-----ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 69
Query: 67 LRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVAL 126
L AQEEVKRIQSVPLVIGQF+E VDQN GIVGSTTGSNYYVRILSTI+RELLKPSASVAL
Sbjct: 70 LHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVAL 129
Query: 127 HRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYK 186
H+HSNALVDVLPPEADSSIS+L EKPDV Y+DIGG D QKQEIREAVELPLTH ELY+
Sbjct: 130 HKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYR 189
Query: 187 QIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
QIGI+PPRGVL+YGPPG GKTMLA AVA+HTTAAFIRVVGSEFVQKYLGE
Sbjct: 190 QIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGE 239
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 348 bits (892), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/217 (76%), Positives = 191/217 (88%)
Query: 29 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 88
+D D Y+ LK LQR LE+I +QEEY+KDEQ++LKREL+RAQEE+KRIQSVPLVIGQFME
Sbjct: 36 NDGSDEYATLKRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFME 95
Query: 89 MVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 148
+DQN GIV S+TGSNY VRILST++RE LKPS+SVALHRHSNALVD+LPPEADSSI++L
Sbjct: 96 AIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAML 155
Query: 149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208
++EKPDVTY D+GG D+QKQEIREAVELPLT +LYKQIGIDPPRGVLLYGPPGTGKTM
Sbjct: 156 GENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTM 215
Query: 209 LAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
L KAVAN TTA+FIRV GSEFVQKYLGE + +F
Sbjct: 216 LVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVF 252
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 342 bits (877), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 161/208 (77%), Positives = 187/208 (89%)
Query: 29 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 88
++E DLY+R K+L+RQLE +D+QE ++K++ K+LKREL+RAQEEVKRIQSVPLVIGQF+E
Sbjct: 4 TEEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLE 63
Query: 89 MVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 148
+DQN IVGSTTGSNY VRILST++RELLKPSASVAL RHSNALVD+LPPEADSSIS+L
Sbjct: 64 AIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISML 123
Query: 149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208
E+PDV+Y D+GG D+QKQE+REAVELPLT +LY+QIGIDPPRGVLLYGPPGTGKTM
Sbjct: 124 RPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTM 183
Query: 209 LAKAVANHTTAAFIRVVGSEFVQKYLGE 236
L KAVAN T A FIRVVGSEFVQKYLGE
Sbjct: 184 LVKAVANSTAANFIRVVGSEFVQKYLGE 211
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 336 bits (862), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 164/206 (79%), Positives = 182/206 (88%)
Query: 31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 90
E DLY ++KSL+ +L+F +IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMV
Sbjct: 22 EADLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMV 81
Query: 91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQ 150
D N GIV ST+GS VRILSTI+RELLKPSASVAL RHSNALVD LPPE+DSSI LL
Sbjct: 82 DSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGA 141
Query: 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210
EKP +Y+DIGG DIQKQE+REAVELPLTHH LYKQIGIDPPRGVLLYGPPGTGKTMLA
Sbjct: 142 DEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLA 201
Query: 211 KAVANHTTAAFIRVVGSEFVQKYLGE 236
KAVA+HT+AAFIRVVGSEFVQKYLGE
Sbjct: 202 KAVAHHTSAAFIRVVGSEFVQKYLGE 227
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 328 bits (841), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 154/204 (75%), Positives = 181/204 (88%)
Query: 33 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ 92
D+Y +LK L+++ E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +DQ
Sbjct: 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQ 105
Query: 93 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSE 152
N GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++ ++E
Sbjct: 106 NTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENE 165
Query: 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 212
KPDVTY D+GG D+QKQEIREAVELPL +LY+QIGIDPPRGVLLYGPPGTGKTML KA
Sbjct: 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKA 225
Query: 213 VANHTTAAFIRVVGSEFVQKYLGE 236
VAN T AAFIRV GSEFV KYLGE
Sbjct: 226 VANSTKAAFIRVNGSEFVHKYLGE 249
>sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B OS=Caenorhabditis
elegans GN=rpt-3 PE=3 SV=1
Length = 414
Score = 309 bits (792), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/221 (71%), Positives = 186/221 (84%), Gaps = 6/221 (2%)
Query: 16 PPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKR 75
P P+T D++ D Y +L +L+RQL + + E+Y+K E +NL++ELL AQEEVKR
Sbjct: 24 PLPATCVDVSS------DDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKR 77
Query: 76 IQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVD 135
IQSVPLVIGQF+E VDQN+ IVGSTTGSNYYVR+LS ++RELLKP SVALH++SNALVD
Sbjct: 78 IQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVD 137
Query: 136 VLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG 195
VLPPEADSSI +L EKPD++Y DIGG D+QKQE+REAVELPLTH ELY+QIGIDPPRG
Sbjct: 138 VLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRG 197
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
VL+YGPPG GKTMLAKAVA +T A+FIRVVGSEFVQKYLGE
Sbjct: 198 VLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGE 238
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 286 bits (733), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 132/203 (65%), Positives = 168/203 (82%)
Query: 34 LYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQN 93
L+ R K ++R+L ++I+E YV+ E + LKRE ++EE+ R++SVPL++GQF+E +D +
Sbjct: 9 LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSS 68
Query: 94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
IVGST GSN+ VRILST++RELLKP+ +VALHRHS+A+V VLPPE DS+I ++ +SEK
Sbjct: 69 TAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEK 128
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P VTY D+GG D+QKQEI+E VELPL +LY+QIGIDPP+GVLLYGPPGTGKTML KAV
Sbjct: 129 PSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAV 188
Query: 214 ANHTTAAFIRVVGSEFVQKYLGE 236
ANHT A FIRV GSEFVQKYLGE
Sbjct: 189 ANHTKATFIRVNGSEFVQKYLGE 211
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 148/211 (70%), Gaps = 3/211 (1%)
Query: 35 YSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
Y +L+ L R+LE ++++++ E+ +RE+ R + EV+R++S PL++G ++++
Sbjct: 20 YYKLRELYRRLE---DEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGR 76
Query: 95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
+V S+TG + V IN E LKP A VAL++ + A+V+VLP D + EKP
Sbjct: 77 VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKP 136
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
+V+Y DIGG D+Q +EIREAVELPL EL+ ++GI+PP+GVLLYGPPGTGKT+LAKAVA
Sbjct: 137 EVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVA 196
Query: 215 NHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
N T A FIRVVGSEFVQKY+GE +++F
Sbjct: 197 NQTRATFIRVVGSEFVQKYIGEGARLVREVF 227
>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
SV=1
Length = 397
Score = 200 bits (509), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 140/205 (68%), Gaps = 3/205 (1%)
Query: 32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
DD + LK RQLE +Q ++ +++ L+REL R + E+ R++ P G +E++D
Sbjct: 14 DDYVTFLKRRIRQLE---LQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLD 70
Query: 92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
IV + G + VRI I R+ LKP A VAL + + A+V++LP E D S+
Sbjct: 71 DERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVI 130
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E+P VTYNDIGG + Q QE+REA+ELPL H EL++Q+GI+PP+GVLLYGPPG GKT++AK
Sbjct: 131 ERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAK 190
Query: 212 AVANHTTAAFIRVVGSEFVQKYLGE 236
AVANH A FIRVVGSE V+K++GE
Sbjct: 191 AVANHVNATFIRVVGSELVRKFIGE 215
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 140/205 (68%), Gaps = 3/205 (1%)
Query: 32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
DD LK RQLE +Q ++ +++ L+REL R + E+ R++ P G +E++D
Sbjct: 15 DDYIMYLKKRIRQLE---LQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGTLIELLD 71
Query: 92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
++ IV + G + VRI I RE LKP A VAL + + A+V++LP E D S+
Sbjct: 72 EDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVI 131
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E+P V+YNDIGG D Q QE+REA+ELPL H EL++++GI+PP+GVLLYGPPG GKT++AK
Sbjct: 132 ERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAK 191
Query: 212 AVANHTTAAFIRVVGSEFVQKYLGE 236
A+A+ A FIRVVGSE V+K++GE
Sbjct: 192 ALAHEVNATFIRVVGSELVRKFIGE 216
>sp|O57940|PAN_PYRHO Proteasome-activating nucleotidase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pan PE=3 SV=1
Length = 399
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 143/215 (66%), Gaps = 3/215 (1%)
Query: 22 SDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPL 81
D + D DD + LK RQLE +Q ++ +++ L+REL R + E+ R++ P
Sbjct: 6 GDEVQFQGDYDDYITYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPA 62
Query: 82 VIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEA 141
G +E++D++ IV + G + VRI I+R+ L+P VAL + + A+V++LP
Sbjct: 63 FAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSK 122
Query: 142 DSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGP 201
D ++ E+P+VTYNDIGG Q QE+REA+ELPL H EL++++GIDPP+GVLLYGP
Sbjct: 123 DPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGP 182
Query: 202 PGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
PG GKT++AKA+A+ A FIRVVGSE V+KY+GE
Sbjct: 183 PGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGE 217
>sp|P36612|PRS4_SCHPO 26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mts2 PE=2 SV=1
Length = 448
Score = 194 bits (492), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 148/212 (69%), Gaps = 5/212 (2%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKR---IQSVPLVIGQFMEMVDQN 93
RL +QR + + ++EEYV++ Q+ LK + R QEE R I+ P+ +G E++D +
Sbjct: 68 RLLKMQRIHDHLLMEEEYVQN-QERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDD 126
Query: 94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
+ IV ST G YYV I+S +++++L+P SV LH + ++V +L + D I+++ +
Sbjct: 127 HAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKA 185
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P +Y DIGG + Q QEI+EAVELPLTH ELY+++GI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 186 PTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 245
Query: 214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
AN T+A F+RVVGSE +QKYLG+ +Q+F
Sbjct: 246 ANQTSATFLRVVGSELIQKYLGDGPRLVRQLF 277
>sp|C5A6P8|PAN_THEGJ Proteasome-activating nucleotidase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1
Length = 397
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 137/196 (69%)
Query: 41 LQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGST 100
L+R++ +++Q ++ +++ L+REL R + E+ R++ P G +E++D + IV +
Sbjct: 20 LKRRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 79
Query: 101 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYND 160
G + VRI I R+ LKP + VAL + + A+V++LP E D S+ EKP VTY D
Sbjct: 80 NGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQD 139
Query: 161 IGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 220
IGG + Q E+REAVELPL H EL++++GI+PP+GVLLYGPPG GKT++AKAVANH A
Sbjct: 140 IGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNAT 199
Query: 221 FIRVVGSEFVQKYLGE 236
FIRVVGSE V+K++GE
Sbjct: 200 FIRVVGSELVRKFIGE 215
>sp|Q9V287|PAN_PYRAB Proteasome-activating nucleotidase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=pan PE=3 SV=2
Length = 396
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 139/205 (67%), Gaps = 3/205 (1%)
Query: 32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
DD + LK RQLE +Q ++ +++ L+REL R + E+ R++ P G +E++D
Sbjct: 13 DDYITYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLD 69
Query: 92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
+ IV + G + VRI I R+ L+P A VAL + + A++++LP D ++
Sbjct: 70 DDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVI 129
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E+P+VTYNDIGG Q QE+REA+ELPL H EL++++GIDPP+GVLLYGPPG GKT++AK
Sbjct: 130 ERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAK 189
Query: 212 AVANHTTAAFIRVVGSEFVQKYLGE 236
A+A+ A FIRVVGSE V+KY+GE
Sbjct: 190 ALAHEVNATFIRVVGSELVRKYIGE 214
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 145/202 (71%), Gaps = 2/202 (0%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
+L L+R +++ ++EE++++++ K L+ + + +V ++ P+ +G E++D N+
Sbjct: 61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120
Query: 95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
IV ++ GS +YV ILS ++++LL+P SV L+ +A++ VL + D ++++ + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct: 181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240
Query: 215 NHTTAAFIRVVGSEFVQKYLGE 236
N T+A F+RVVGSE +QKYLG+
Sbjct: 241 NQTSATFLRVVGSELIQKYLGD 262
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 145/202 (71%), Gaps = 2/202 (0%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
+L L+R +++ ++EE++++++ K L+ + + +V ++ P+ +G E++D N+
Sbjct: 61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120
Query: 95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
IV ++ GS +YV ILS ++++LL+P SV L+ +A++ VL + D ++++ + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct: 181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240
Query: 215 NHTTAAFIRVVGSEFVQKYLGE 236
N T+A F+RVVGSE +QKYLG+
Sbjct: 241 NQTSATFLRVVGSELIQKYLGD 262
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 145/202 (71%), Gaps = 2/202 (0%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNN 94
+L L+R +++ ++EE++++++ K L+ + + +V ++ P+ +G E++D N+
Sbjct: 61 KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120
Query: 95 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP 154
IV ++ GS +YV ILS ++++LL+P SV L+ +A++ VL + D ++++ + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180
Query: 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA 214
TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVA
Sbjct: 181 QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240
Query: 215 NHTTAAFIRVVGSEFVQKYLGE 236
N T+A F+RVVGSE +QKYLG+
Sbjct: 241 NQTSATFLRVVGSELIQKYLGD 262
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 154/232 (66%), Gaps = 17/232 (7%)
Query: 10 PKPVSEPP---PSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQ--KNLKR 64
P S+PP P T+ L +L L+R +++ ++EE++++++ K L+
Sbjct: 43 PDAASKPPLVTPHTQCRL------------KLLKLERIKDYLLMEEEFIRNQEQMKPLEE 90
Query: 65 ELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASV 124
+ + +V ++ P+ +G E++D N+ IV ++ GS +YV ILS ++++LL+P SV
Sbjct: 91 KQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSV 150
Query: 125 ALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHEL 184
L+ +A++ VL + D ++++ + P TY DIGG D Q QEI+E+VELPLTH E
Sbjct: 151 LLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEY 210
Query: 185 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F+RVVGSE +QKYLG+
Sbjct: 211 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD 262
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 191 bits (486), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 145/203 (71%), Gaps = 4/203 (1%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 93
+L L+R +++ +++E++++ Q+ LK + + +EE V ++ P+ +G E++D N
Sbjct: 60 KLLKLERIKDYLMMEDEFIRN-QERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDN 118
Query: 94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
+ IV ++ GS +YV ILS ++++ L+P SV L+ +A+V VL + D ++++ +
Sbjct: 119 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKA 178
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAV
Sbjct: 179 PQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAV 238
Query: 214 ANHTTAAFIRVVGSEFVQKYLGE 236
AN T+A F+RVVGSE +QKYLG+
Sbjct: 239 ANQTSATFLRVVGSELIQKYLGD 261
>sp|Q9SL67|PRS4B_ARATH 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis
thaliana GN=RPT2B PE=2 SV=1
Length = 443
Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 143/203 (70%), Gaps = 4/203 (1%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 93
RL L+R +++ ++EE+V + Q+ LK + +A+E+ V ++ P+ +G E++D+N
Sbjct: 64 RLLKLERIKDYLLMEEEFVAN-QERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDEN 122
Query: 94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
+ IV S+ G YYV ILS ++++ L+P S+ +H ++V +L E D +S++ +
Sbjct: 123 HAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKA 182
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 183 PLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 242
Query: 214 ANHTTAAFIRVVGSEFVQKYLGE 236
AN T+A F+RVVGSE +QKYLG+
Sbjct: 243 ANSTSATFLRVVGSELIQKYLGD 265
>sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis
thaliana GN=RPT2A PE=2 SV=1
Length = 443
Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 143/203 (70%), Gaps = 4/203 (1%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 93
RL L+R +++ ++EE+V + Q+ LK + +A+E+ V ++ P+ +G E++D+N
Sbjct: 64 RLLKLERIKDYLLMEEEFVAN-QERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDEN 122
Query: 94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
+ IV S+ G YYV ILS ++++ L+P S+ +H ++V +L E D +S++ +
Sbjct: 123 HAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKA 182
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P +Y DIGG + Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 183 PLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 242
Query: 214 ANHTTAAFIRVVGSEFVQKYLGE 236
AN T+A F+RVVGSE +QKYLG+
Sbjct: 243 ANSTSATFLRVVGSELIQKYLGD 265
>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
Length = 396
Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 138/205 (67%), Gaps = 3/205 (1%)
Query: 32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
DD + LK RQLE +Q ++ +++ L+REL R + E+ R++ P G +E++D
Sbjct: 13 DDYVTYLKRRIRQLE---LQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLD 69
Query: 92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
+ IV + G + VRI I++ L+P VAL + + A++++LP D ++
Sbjct: 70 DDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVV 129
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
E+P+VTYNDIGG Q QE+REA+ELPL H EL++++GIDPP+GVLLYGPPG GKT++AK
Sbjct: 130 ERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAK 189
Query: 212 AVANHTTAAFIRVVGSEFVQKYLGE 236
A+A+ A FIRVVGSE V+KY+GE
Sbjct: 190 AIAHEVNATFIRVVGSELVRKYIGE 214
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 142/216 (65%), Gaps = 14/216 (6%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQ-------EEVKRIQSVPLVIGQFMEM 89
R K+L+++LE +DE+ L+ EL R + +++R++ PL++G E+
Sbjct: 57 RRKTLEKELEM-------ERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEI 109
Query: 90 VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 149
+D IV S+TG + + T++R L+P A+VAL++ S A+VDVLP E DS + +
Sbjct: 110 LDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAME 169
Query: 150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTML 209
E PDV+Y+DIGG D Q +EIRE VE PL EL++++G++PP+GVLLYGPPGTGKT+L
Sbjct: 170 VDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLL 229
Query: 210 AKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
AKAVANH A FIR+ E VQK++GE +++F
Sbjct: 230 AKAVANHADATFIRLAAPELVQKFIGEGARLVRELF 265
>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT2 PE=1
SV=3
Length = 437
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 154/230 (66%), Gaps = 14/230 (6%)
Query: 18 PSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKR 75
PSTR L +L ++R + + ++EE+V + + K +++ +++++
Sbjct: 51 PSTRCKL------------KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEE 98
Query: 76 IQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVD 135
I+ PL IG E++D ++ IV S T +YYV ILS +++ELL+P SV LH + ++V
Sbjct: 99 IRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVG 158
Query: 136 VLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG 195
VL +AD +S++ + P +Y+DIGG + Q QEI+E+VELPLTH ELY+++GI PP+G
Sbjct: 159 VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218
Query: 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
V+LYG PGTGKT+LAKAVAN T+A F+R+VGSE +QKYLG+ +QIF
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIF 268
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 145/213 (68%)
Query: 33 DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ 92
+L +R L+ Q ++ ++ YV+ ++ +REL + + E+++++S PLVIG +++D
Sbjct: 27 NLENRNLELREQFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDN 86
Query: 93 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSE 152
+ IV S+ G + VR I+ +LLKP L++ S A+VDVLP D+ I + E
Sbjct: 87 SRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVE 146
Query: 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 212
P+ TY +IGG + Q +EIREAVELPLT +L++++GI PP+GVLLYGPPGTGKT+LA+A
Sbjct: 147 SPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARA 206
Query: 213 VANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
VA+ T A F+RVVGSE VQKY+GE +++F
Sbjct: 207 VAHQTNAHFLRVVGSELVQKYIGEGARLVRELF 239
>sp|P46466|PRS4_ORYSJ 26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp.
japonica GN=TBP2 PE=2 SV=2
Length = 448
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 140/203 (68%), Gaps = 4/203 (1%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 93
RL L+R +++ ++EE+V Q+ L+ + +E+ V ++ P+ +G E++D++
Sbjct: 69 RLLKLERVKDYLLMEEEFVA-AQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDES 127
Query: 94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
+ IV S+ G YYV ILS ++++ L+P S+ +H ++V +L E D +S++ +
Sbjct: 128 HAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKA 187
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P +Y DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 188 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAV 247
Query: 214 ANHTTAAFIRVVGSEFVQKYLGE 236
AN T+A F+RVVGSE +QKYLG+
Sbjct: 248 ANSTSATFLRVVGSELIQKYLGD 270
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 131/182 (71%)
Query: 55 VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTIN 114
+++E+ L RE+ + E++R ++ PLVI E++D + V STTG ++ + I+
Sbjct: 47 IENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFID 106
Query: 115 RELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREA 174
R+ L+P A VAL++ + ++VDVLP E D ++ + EKPDV+Y IGG + Q +E++E
Sbjct: 107 RKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKET 166
Query: 175 VELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 234
VELPL EL+++IGI+PP+GVLLYGPPGTGKT+LAKAVA+ T A FI++V SEFV+KY+
Sbjct: 167 VELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYI 226
Query: 235 GE 236
GE
Sbjct: 227 GE 228
>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis
elegans GN=rpt-2 PE=3 SV=1
Length = 443
Score = 181 bits (460), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 145/214 (67%), Gaps = 4/214 (1%)
Query: 36 SRLKSL--QRQLEFIDIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 91
RLK L +R +++ +++E++++++ K + + +V ++ P+ +G E++D
Sbjct: 61 CRLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEIID 120
Query: 92 QNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQS 151
+ IV + GS +YV I+S +++E L+P SV L+ ++A++ VL + D +S++
Sbjct: 121 DQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLE 180
Query: 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 211
+ P TY D+GG D Q QEI+EAVELPLTH E Y+++GI PP+GV+LYG PGTGKT+LAK
Sbjct: 181 KAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAK 240
Query: 212 AVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
AVAN T+A F+R+VGSE +QKYLG+ +++F
Sbjct: 241 AVANQTSATFLRIVGSELIQKYLGDGPKMVRELF 274
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 139/212 (65%)
Query: 34 LYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQN 93
L SR L+ Q+ + + Y++ ++ +RE+ + + E ++++S PL+IG +++VD N
Sbjct: 53 LESRNLELREQIRQAEADKRYIETQKIRYEREVRKLKSESEQLRSPPLIIGTVVDVVDAN 112
Query: 94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
IV S+ G + VR ++N + +KP A L++ S A+V++LP D+ + + +
Sbjct: 113 RVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDS 172
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P Y DIGG Q E+REAVELPL EL+ QIGI+PP+GVLLYGPPGTGKT+LAKAV
Sbjct: 173 PQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAV 232
Query: 214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
A+ T A F+RVVGSE VQKY+GE +++F
Sbjct: 233 AHETNAHFMRVVGSELVQKYIGEGARLVRELF 264
>sp|B8GGN4|PAN_METPE Proteasome-activating nucleotidase OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3
SV=1
Length = 412
Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 148/231 (64%), Gaps = 1/231 (0%)
Query: 16 PPPSTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVK 74
P P DL + +L R L+ QL I+ + Y++ ++ +RE+ + + E++
Sbjct: 9 PEPQKGEDLYRYLLERVTNLEDRNTELREQLRQIEADKRYLETQKVRYEREVRKFKGEIE 68
Query: 75 RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALV 134
+++S PLVIG +++D+N IV S+ G + V I ++N E +KP A L++ S A+V
Sbjct: 69 QMKSPPLVIGTVTDLIDENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIV 128
Query: 135 DVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 194
++LP D+ I + E P Y +IGG + Q EIREAVELPL E+++++GI+PP+
Sbjct: 129 EILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPK 188
Query: 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
GVLL+GPPGTGKT+LA+AVA+ T A F+RVVGSE VQKY+GE +++F
Sbjct: 189 GVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELF 239
>sp|Q8PY58|PAN_METMA Proteasome-activating nucleotidase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=pan PE=3 SV=1
Length = 420
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 147/229 (64%), Gaps = 1/229 (0%)
Query: 18 PSTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
P + TE D L SR L+ Q I+ ++ Y+++++ +RE+ + Q E+ R+
Sbjct: 17 PGELGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRM 76
Query: 77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
++ PL+IG ++++ + IV S+ G + V + I+ + L P A VAL++H+ A+ +V
Sbjct: 77 KTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEV 136
Query: 137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
+P + ++ + E +V Y+ IGG D Q QE++EAVELPLT E + +IGI+PP+GV
Sbjct: 137 IPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGV 196
Query: 197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
LLYG PGTGKT+LAKAVA+ T A FIRVVGSE VQKY+G+ ++IF
Sbjct: 197 LLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIF 245
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 177 bits (448), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 140/201 (69%), Gaps = 5/201 (2%)
Query: 41 LQRQLEFIDIQEEYVKDEQKNLKRELLRAQEE-----VKRIQSVPLVIGQFMEMVDQNNG 95
L+R +++ +++E++++ N + ++E+ ++ ++ PL +G E++D N+
Sbjct: 61 LERIKDYLLMEQEFLQNYDLNQPKVDENSKEQADEKIIEELRGDPLTVGNLEEIIDDNHA 120
Query: 96 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD 155
IV ST G +YVRI+S +++ L A+V L+ + ++V V+ E D ++++ + P
Sbjct: 121 IVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPT 180
Query: 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215
+Y+DIGG + Q QE++EA+ELPLTH ELY++IGI PP+GV+LYG PGTGKT+LAKAVAN
Sbjct: 181 ESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVAN 240
Query: 216 HTTAAFIRVVGSEFVQKYLGE 236
T+A F+RVVGSE +QKYLG+
Sbjct: 241 QTSATFLRVVGSELIQKYLGD 261
>sp|Q8SRH0|PRS4_ENCCU 26S protease regulatory subunit 4 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT2 PE=1 SV=1
Length = 424
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 121/164 (73%)
Query: 73 VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNA 132
V++++ PL +G E VD ++GI+ + G YYV I+S ++++LL+P +V L+ N+
Sbjct: 83 VEQLRGSPLSVGTLEEFVDDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNYKDNS 142
Query: 133 LVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP 192
+V VL E D ++++ + P TY DIGG + Q QEI+E+VELPLT+ ELY+++GI P
Sbjct: 143 VVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKP 202
Query: 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236
P+GV+LYG PGTGKT+LAKAVAN T+A F+RVVG+E +Q+YLGE
Sbjct: 203 PKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGE 246
>sp|Q0W257|PAN_UNCMA Proteasome-activating nucleotidase OS=Uncultured methanogenic
archaeon RC-I GN=pan PE=3 SV=1
Length = 417
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 140/209 (66%), Gaps = 3/209 (1%)
Query: 37 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGI 96
RLK R++E ++++ V++++ +RE+ + E+ R+++ PL++G ++++ I
Sbjct: 40 RLKEEYRKIE---LEKKSVENKKVQYEREIRKLTSELDRLKTPPLIVGTILDVMANGKMI 96
Query: 97 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV 156
+ S+TG + V IN + + P A VAL++ S A+++VLP D S+ + + P++
Sbjct: 97 IKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEI 156
Query: 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216
Y IGG + Q E++E VELPL EL++++GI+PP+GVLLYGPPGTGKT+LAKAVAN
Sbjct: 157 DYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVANR 216
Query: 217 TTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
T A FIR++GSE VQKY+GE +++F
Sbjct: 217 TKATFIRIIGSELVQKYIGEGARMVRELF 245
>sp|Q8TI88|PAN_METAC Proteasome-activating nucleotidase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pan
PE=3 SV=2
Length = 421
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 146/229 (63%), Gaps = 1/229 (0%)
Query: 18 PSTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRI 76
P + TE D L SR L+ Q I+ ++ Y+++++ +RE+ + Q E+ R+
Sbjct: 17 PGELGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRM 76
Query: 77 QSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDV 136
++ PL+IG ++++ + IV S+ G + V + I+ + L P A VAL++H+ A+ +V
Sbjct: 77 KTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEV 136
Query: 137 LPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 196
+P + ++ + E +V Y+ IGG D Q QE++EAVELPL E + +IGI+PP+GV
Sbjct: 137 IPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGV 196
Query: 197 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
LLYG PGTGKT+LAKAVA+ T A FIRVVGSE VQKY+G+ ++IF
Sbjct: 197 LLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIF 245
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 138/212 (65%)
Query: 34 LYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQN 93
+ S+ + L+ Q+ ++ + Y++ ++ +RE+ + + E++ +++ PL++G +++D
Sbjct: 28 MESQNQELKEQIRQLESDKRYIETQKIRYEREVRKLKSEIEHLKTPPLIVGTITDIIDSG 87
Query: 94 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153
+V S+ G + VR+ +N LK L++ S A+V+VLP DS + + +
Sbjct: 88 RVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDA 147
Query: 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 213
P TY DIGG + Q EIREAVELP+T +L+++IGI+PP+GVLLYGPPGTGKT+LAKAV
Sbjct: 148 PTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAV 207
Query: 214 ANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245
A+ T A F+ VGSE VQKY+GE +++F
Sbjct: 208 AHETHAIFLHTVGSELVQKYIGEGARLVRELF 239
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 173 bits (439), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 121/181 (66%), Gaps = 2/181 (1%)
Query: 65 ELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASV 124
E+LR E+ R++ PL++G ++ V + +V S+TG ++ V + +N + L P V
Sbjct: 78 EILR--RELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRV 135
Query: 125 ALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHEL 184
L++ + +VDVLP D + E+P+V Y DIGG + Q QEIRE VELPL H EL
Sbjct: 136 CLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPEL 195
Query: 185 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQI 244
++++GI+PP+G+LLYGPPGTGKT+LAKAVA T A FIRVVGSE V+K++GE K I
Sbjct: 196 FEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDI 255
Query: 245 F 245
F
Sbjct: 256 F 256
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 173 bits (439), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 137/200 (68%), Gaps = 9/200 (4%)
Query: 39 KSLQRQLEFIDIQEEYVKDEQKN--LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGI 96
K L+ +L+ DI E V+ +++N LKREL +++ PL++G ++ V++ +
Sbjct: 33 KVLRLELKNKDINRENVQIKKENEILKREL-------DKLRIPPLILGTILDKVNERKAV 85
Query: 97 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV 156
V S+TG N+ V + ++ E + P A V L++ + A+V+VLP E D + EKPD+
Sbjct: 86 VKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDI 145
Query: 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216
++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGKT+LAKAVA
Sbjct: 146 SFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYE 205
Query: 217 TTAAFIRVVGSEFVQKYLGE 236
T A+F+RVVGSE V+K++GE
Sbjct: 206 TNASFVRVVGSELVKKFIGE 225
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 173 bits (439), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 137/200 (68%), Gaps = 9/200 (4%)
Query: 39 KSLQRQLEFIDIQEEYVKDEQKN--LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGI 96
K L+ +L+ DI E V+ +++N LKREL +++ PL++G ++ V++ +
Sbjct: 33 KVLRLELKNKDISRENVQIKKENEILKREL-------DKLRIPPLILGTILDRVNERKAV 85
Query: 97 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV 156
V S+TG N+ V + ++ E + P A V L++ + A+V+VLP E D + EKPD+
Sbjct: 86 VKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDI 145
Query: 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216
++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGKT+LAKAVA
Sbjct: 146 SFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYE 205
Query: 217 TTAAFIRVVGSEFVQKYLGE 236
T A+F+RVVGSE V+K++GE
Sbjct: 206 TNASFVRVVGSELVKKFIGE 225
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 137/200 (68%), Gaps = 9/200 (4%)
Query: 39 KSLQRQLEFIDIQEEYVKDEQKN--LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGI 96
K L+ +L+ D+ E V+ +++N LKREL +++ PL++G ++ V++ +
Sbjct: 33 KVLRLELKNKDVTRENVQIKKENEILKREL-------DKLRIPPLILGTILDKVNERKAV 85
Query: 97 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV 156
V S+TG N+ V + ++ E + P A V L++ + A+V+VLP E D + EKPD+
Sbjct: 86 VKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDI 145
Query: 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216
++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGKT+LAKAVA
Sbjct: 146 SFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYE 205
Query: 217 TTAAFIRVVGSEFVQKYLGE 236
T A+F+RVVGSE V+K++GE
Sbjct: 206 TNASFVRVVGSELVKKFIGE 225
>sp|C3N7K8|PAN_SULIY Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1
Length = 393
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 141/205 (68%), Gaps = 3/205 (1%)
Query: 44 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGST 100
+++ + + EE +K Q +NL++EL + E++++ S PL+ ++++ +V S+
Sbjct: 16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSS 75
Query: 101 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYND 160
+G N V + S I+++L+KP SVAL++ + +++VLP + D + + EKP+VTY++
Sbjct: 76 SGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSE 135
Query: 161 IGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 220
IGG + Q +E+RE VELPL E++++IG++PP+GVLLYGPPGTGKTMLAKAVA + A
Sbjct: 136 IGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAV 195
Query: 221 FIRVVGSEFVQKYLGEVWLKHKQIF 245
FI VV SEF QK++GE +++F
Sbjct: 196 FIHVVASEFAQKFVGEGARIVRELF 220
>sp|C3MY47|PAN_SULIM Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1
Length = 393
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 141/205 (68%), Gaps = 3/205 (1%)
Query: 44 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGST 100
+++ + + EE +K Q +NL++EL + E++++ S PL+ ++++ +V S+
Sbjct: 16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSS 75
Query: 101 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYND 160
+G N V + S I+++L+KP SVAL++ + +++VLP + D + + EKP+VTY++
Sbjct: 76 SGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSE 135
Query: 161 IGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 220
IGG + Q +E+RE VELPL E++++IG++PP+GVLLYGPPGTGKTMLAKAVA + A
Sbjct: 136 IGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAV 195
Query: 221 FIRVVGSEFVQKYLGEVWLKHKQIF 245
FI VV SEF QK++GE +++F
Sbjct: 196 FIHVVASEFAQKFVGEGARIVRELF 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,230,390
Number of Sequences: 539616
Number of extensions: 4016678
Number of successful extensions: 22852
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 444
Number of HSP's that attempted gapping in prelim test: 20404
Number of HSP's gapped (non-prelim): 2605
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)