Query 025979
Match_columns 245
No_of_seqs 282 out of 2525
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 11:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 4.7E-49 1E-53 351.8 15.0 212 34-245 26-237 (406)
2 KOG0727 26S proteasome regulat 100.0 2.5E-48 5.4E-53 334.4 16.6 216 30-245 26-241 (408)
3 KOG0726 26S proteasome regulat 100.0 3.4E-40 7.3E-45 288.6 13.8 233 13-245 24-271 (440)
4 KOG0728 26S proteasome regulat 100.0 2.5E-39 5.4E-44 278.5 16.1 216 30-245 18-233 (404)
5 KOG0652 26S proteasome regulat 100.0 3.9E-37 8.5E-42 266.2 13.8 217 29-245 20-257 (424)
6 PTZ00454 26S protease regulato 100.0 9.1E-37 2E-41 283.0 14.4 220 26-245 12-231 (398)
7 PTZ00361 26 proteosome regulat 100.0 1.5E-35 3.2E-40 277.2 13.9 215 31-245 53-269 (438)
8 PRK03992 proteasome-activating 100.0 7.5E-33 1.6E-37 256.6 13.9 214 32-245 4-217 (389)
9 TIGR01242 26Sp45 26S proteasom 100.0 6.1E-33 1.3E-37 255.0 13.0 206 40-245 3-208 (364)
10 KOG0729 26S proteasome regulat 100.0 3.3E-33 7.1E-38 242.5 7.9 168 78-245 92-263 (435)
11 KOG0651 26S proteasome regulat 100.0 1.9E-30 4.2E-35 228.6 9.5 196 49-245 23-218 (388)
12 TIGR03689 pup_AAA proteasome A 99.9 2.6E-27 5.7E-32 224.8 11.0 204 38-245 3-278 (512)
13 KOG0733 Nuclear AAA ATPase (VC 99.9 1.5E-27 3.2E-32 225.0 5.3 95 151-245 503-597 (802)
14 KOG0730 AAA+-type ATPase [Post 99.9 3.3E-27 7.2E-32 224.5 5.7 95 151-245 426-520 (693)
15 KOG0736 Peroxisome assembly fa 99.9 8.1E-26 1.8E-30 217.6 6.5 96 149-245 662-757 (953)
16 KOG0739 AAA+-type ATPase [Post 99.9 2.4E-23 5.3E-28 183.3 5.1 95 150-245 124-218 (439)
17 KOG0733 Nuclear AAA ATPase (VC 99.9 5.8E-23 1.3E-27 194.1 4.6 92 153-245 184-275 (802)
18 KOG0731 AAA+-type ATPase conta 99.9 2.2E-22 4.8E-27 196.1 6.9 94 151-245 303-396 (774)
19 KOG0738 AAA+-type ATPase [Post 99.9 1.7E-22 3.6E-27 183.0 5.1 94 151-245 204-297 (491)
20 KOG0734 AAA+-type ATPase conta 99.8 4.2E-22 9.1E-27 186.1 4.9 93 152-245 297-389 (752)
21 COG0466 Lon ATP-dependent Lon 99.8 7.8E-22 1.7E-26 189.6 4.5 165 32-228 216-385 (782)
22 COG0464 SpoVK ATPases of the A 99.8 2.1E-21 4.4E-26 185.1 5.4 95 151-245 234-328 (494)
23 KOG0737 AAA+-type ATPase [Post 99.8 1.6E-21 3.4E-26 175.8 3.5 93 153-245 86-179 (386)
24 KOG0735 AAA+-type ATPase [Post 99.8 1.7E-20 3.6E-25 179.9 6.9 96 150-245 658-753 (952)
25 TIGR01243 CDC48 AAA family ATP 99.8 6.6E-20 1.4E-24 182.3 5.6 94 152-245 446-539 (733)
26 KOG2004 Mitochondrial ATP-depe 99.8 1.8E-19 3.9E-24 173.0 5.8 164 35-228 306-473 (906)
27 COG0465 HflB ATP-dependent Zn 99.8 1.2E-19 2.7E-24 173.9 4.3 94 151-245 142-235 (596)
28 COG0542 clpA ATP-binding subun 99.8 2.8E-19 6E-24 175.5 5.4 173 6-233 376-564 (786)
29 COG1223 Predicted ATPase (AAA+ 99.8 4.7E-19 1E-23 153.8 4.3 91 151-245 113-203 (368)
30 TIGR00763 lon ATP-dependent pr 99.7 6.5E-19 1.4E-23 176.1 4.1 181 32-242 213-405 (775)
31 KOG0740 AAA+-type ATPase [Post 99.7 1.4E-18 3E-23 160.9 4.4 94 151-245 145-238 (428)
32 TIGR01241 FtsH_fam ATP-depende 99.7 4.3E-18 9.3E-23 162.5 6.1 94 151-245 47-140 (495)
33 CHL00195 ycf46 Ycf46; Provisio 99.7 5.2E-18 1.1E-22 161.2 4.6 90 153-245 222-311 (489)
34 PRK10787 DNA-binding ATP-depen 99.7 6E-18 1.3E-22 168.8 2.2 169 31-229 214-385 (784)
35 TIGR01243 CDC48 AAA family ATP 99.7 1.5E-17 3.3E-22 165.5 4.6 93 153-245 172-264 (733)
36 KOG0741 AAA+-type ATPase [Post 99.7 1.2E-16 2.7E-21 149.6 7.8 93 153-245 213-309 (744)
37 KOG0730 AAA+-type ATPase [Post 99.6 1.2E-16 2.6E-21 152.8 5.0 91 154-245 180-270 (693)
38 PLN00020 ribulose bisphosphate 99.6 7.1E-17 1.5E-21 147.1 3.1 88 156-245 112-200 (413)
39 KOG0732 AAA+-type ATPase conta 99.6 6.7E-17 1.4E-21 161.8 2.8 92 154-245 260-356 (1080)
40 CHL00176 ftsH cell division pr 99.6 1.9E-16 4.1E-21 154.8 5.4 94 151-245 175-268 (638)
41 TIGR03345 VI_ClpV1 type VI sec 99.6 8.6E-16 1.9E-20 154.8 1.6 217 6-232 393-638 (852)
42 PRK10865 protein disaggregatio 99.5 2.3E-15 5.1E-20 151.9 2.6 220 5-232 383-640 (857)
43 TIGR03346 chaperone_ClpB ATP-d 99.5 9.1E-15 2E-19 147.7 0.4 96 128-231 528-636 (852)
44 CHL00181 cbbX CbbX; Provisiona 99.5 5.2E-14 1.1E-18 125.8 5.2 86 158-244 22-117 (287)
45 CHL00095 clpC Clp protease ATP 99.4 6E-14 1.3E-18 141.4 5.2 180 6-230 384-579 (821)
46 TIGR02881 spore_V_K stage V sp 99.4 4.6E-14 1E-18 124.2 3.8 87 158-245 5-101 (261)
47 TIGR02880 cbbX_cfxQ probable R 99.4 8.2E-14 1.8E-18 124.4 4.7 86 159-245 22-117 (284)
48 PRK10733 hflB ATP-dependent me 99.4 3.4E-13 7.4E-18 132.6 5.6 92 153-245 146-237 (644)
49 CHL00206 ycf2 Ycf2; Provisiona 99.3 5.9E-13 1.3E-17 139.5 4.0 54 180-233 1617-1670(2281)
50 KOG0744 AAA+-type ATPase [Post 99.3 5.8E-13 1.3E-17 119.0 2.5 89 157-245 140-238 (423)
51 PF00004 AAA: ATPase family as 99.2 3.7E-12 7.9E-17 99.1 1.5 50 196-245 1-50 (132)
52 TIGR00390 hslU ATP-dependent p 99.2 4.3E-12 9.4E-17 117.9 2.0 87 159-245 12-101 (441)
53 PF05496 RuvB_N: Holliday junc 99.2 1.8E-11 3.9E-16 105.2 5.1 67 155-229 20-86 (233)
54 KOG1051 Chaperone HSP104 and r 99.2 7.8E-12 1.7E-16 124.9 2.1 94 130-231 527-632 (898)
55 PRK05201 hslU ATP-dependent pr 99.1 1.1E-11 2.4E-16 115.3 1.5 85 159-245 15-104 (443)
56 KOG0743 AAA+-type ATPase [Post 99.1 4.9E-11 1.1E-15 110.7 5.0 74 156-229 198-271 (457)
57 TIGR02639 ClpA ATP-dependent C 99.0 1.6E-10 3.4E-15 115.4 1.3 92 132-231 421-522 (731)
58 PRK11034 clpA ATP-dependent Cl 98.9 3.9E-10 8.4E-15 112.6 3.1 93 130-230 423-525 (758)
59 TIGR00635 ruvB Holliday juncti 98.9 1E-09 2.3E-14 98.1 5.0 63 157-227 2-64 (305)
60 PRK05342 clpX ATP-dependent pr 98.9 5.6E-10 1.2E-14 104.5 2.7 79 160-238 72-154 (412)
61 smart00763 AAA_PrkA PrkA AAA d 98.9 1E-09 2.2E-14 100.6 3.4 77 160-244 52-140 (361)
62 TIGR02639 ClpA ATP-dependent C 98.9 1.7E-09 3.7E-14 108.1 4.5 76 157-245 180-267 (731)
63 COG2256 MGS1 ATPase related to 98.9 2.1E-09 4.6E-14 98.7 4.5 60 155-227 20-82 (436)
64 PRK00080 ruvB Holliday junctio 98.8 3.6E-09 7.8E-14 96.1 5.2 65 155-227 21-85 (328)
65 COG2255 RuvB Holliday junction 98.8 3.7E-09 8.1E-14 93.4 4.6 67 155-229 22-88 (332)
66 PRK04195 replication factor C 98.8 4.2E-09 9.1E-14 100.5 4.3 69 152-229 7-75 (482)
67 KOG0989 Replication factor C, 98.7 6.6E-09 1.4E-13 92.6 3.9 55 152-219 29-83 (346)
68 CHL00095 clpC Clp protease ATP 98.7 4.9E-09 1.1E-13 106.0 3.6 76 157-245 177-264 (821)
69 TIGR00382 clpX endopeptidase C 98.7 5.5E-09 1.2E-13 97.7 3.0 79 159-237 77-161 (413)
70 PRK14962 DNA polymerase III su 98.7 1.9E-08 4.2E-13 95.7 5.3 54 154-219 9-62 (472)
71 PRK10865 protein disaggregatio 98.7 1.7E-08 3.8E-13 102.4 4.8 76 157-245 176-263 (857)
72 PF06068 TIP49: TIP49 C-termin 98.7 2E-08 4.4E-13 92.0 4.3 74 157-238 22-97 (398)
73 COG1224 TIP49 DNA helicase TIP 98.7 1.4E-08 3E-13 92.3 3.1 78 154-239 34-113 (450)
74 PLN03025 replication factor C 98.6 2.8E-08 6E-13 90.0 4.9 63 153-228 7-74 (319)
75 PRK13342 recombination factor 98.6 2.3E-08 5E-13 93.7 4.3 60 155-227 8-70 (413)
76 PRK12402 replication factor C 98.6 3.9E-08 8.5E-13 88.7 5.4 65 153-230 9-78 (337)
77 COG1220 HslU ATP-dependent pro 98.6 1.4E-08 3.1E-13 91.6 1.8 85 160-244 16-103 (444)
78 PHA02544 44 clamp loader, smal 98.6 5E-08 1.1E-12 87.7 5.0 66 151-228 13-78 (316)
79 PRK07940 DNA polymerase III su 98.6 3.9E-08 8.4E-13 91.7 4.4 60 157-219 3-62 (394)
80 PRK14958 DNA polymerase III su 98.6 4.3E-08 9.3E-13 94.2 4.7 56 152-219 9-64 (509)
81 PRK14960 DNA polymerase III su 98.6 4.6E-08 9.9E-13 95.7 4.6 55 153-219 9-63 (702)
82 PRK14961 DNA polymerase III su 98.6 5.4E-08 1.2E-12 89.8 4.5 55 153-219 10-64 (363)
83 PF05673 DUF815: Protein of un 98.6 8E-08 1.7E-12 83.7 4.9 70 152-230 20-92 (249)
84 cd00009 AAA The AAA+ (ATPases 98.5 1.5E-07 3.2E-12 72.9 5.9 43 192-234 18-63 (151)
85 TIGR03346 chaperone_ClpB ATP-d 98.5 7E-08 1.5E-12 98.1 5.0 76 157-245 171-258 (852)
86 PRK14955 DNA polymerase III su 98.5 9.4E-08 2E-12 89.2 4.5 54 154-219 11-64 (397)
87 PRK14956 DNA polymerase III su 98.5 9.1E-08 2E-12 90.9 4.1 55 153-219 12-66 (484)
88 TIGR03420 DnaA_homol_Hda DnaA 98.5 3.1E-07 6.7E-12 78.3 7.1 65 155-232 11-80 (226)
89 PRK14964 DNA polymerase III su 98.5 9.8E-08 2.1E-12 91.1 4.3 54 153-218 7-60 (491)
90 PRK15455 PrkA family serine pr 98.5 1.2E-07 2.6E-12 91.5 4.8 62 157-226 74-137 (644)
91 PRK14963 DNA polymerase III su 98.5 9.8E-08 2.1E-12 91.7 4.1 56 152-219 7-62 (504)
92 TIGR03345 VI_ClpV1 type VI sec 98.5 8.8E-08 1.9E-12 97.2 3.6 77 156-245 184-272 (852)
93 PRK11034 clpA ATP-dependent Cl 98.5 1.3E-07 2.7E-12 94.8 4.5 75 158-245 185-271 (758)
94 PRK06645 DNA polymerase III su 98.5 1.4E-07 3E-12 90.6 4.5 56 152-219 14-69 (507)
95 TIGR01650 PD_CobS cobaltochela 98.5 6.2E-08 1.3E-12 87.9 2.0 48 191-238 62-111 (327)
96 COG0464 SpoVK ATPases of the A 98.5 9.4E-08 2E-12 91.4 3.3 68 177-245 2-69 (494)
97 TIGR02640 gas_vesic_GvpN gas v 98.5 9.8E-08 2.1E-12 84.2 3.2 43 193-235 21-69 (262)
98 TIGR02902 spore_lonB ATP-depen 98.4 9.5E-08 2.1E-12 92.4 3.0 64 152-228 58-131 (531)
99 PF07728 AAA_5: AAA domain (dy 98.4 1.3E-07 2.7E-12 74.9 3.1 34 195-228 1-34 (139)
100 PRK13341 recombination factor 98.4 1.8E-07 3.8E-12 93.3 4.7 60 155-227 24-86 (725)
101 PRK14949 DNA polymerase III su 98.4 1.6E-07 3.5E-12 94.5 4.3 56 153-220 10-65 (944)
102 KOG2028 ATPase related to the 98.4 1.1E-07 2.4E-12 86.8 2.8 59 155-226 134-198 (554)
103 PF01078 Mg_chelatase: Magnesi 98.4 2.8E-07 6E-12 78.6 4.9 46 157-217 1-46 (206)
104 PRK08903 DnaA regulatory inact 98.4 5.9E-07 1.3E-11 77.1 7.1 67 153-231 12-83 (227)
105 PF01695 IstB_IS21: IstB-like 98.4 2.4E-07 5.2E-12 77.4 4.5 43 191-233 45-90 (178)
106 COG1219 ClpX ATP-dependent pro 98.4 3.7E-08 8.1E-13 88.4 -0.7 79 159-240 61-145 (408)
107 PRK14969 DNA polymerase III su 98.4 2.2E-07 4.7E-12 89.8 4.2 55 153-219 10-64 (527)
108 COG1484 DnaC DNA replication p 98.4 4.9E-07 1.1E-11 79.6 5.9 43 192-234 104-149 (254)
109 PRK08691 DNA polymerase III su 98.4 2.4E-07 5.2E-12 91.3 4.0 56 152-219 9-64 (709)
110 PRK14957 DNA polymerase III su 98.4 2.6E-07 5.7E-12 89.3 4.2 55 153-219 10-64 (546)
111 PRK14952 DNA polymerase III su 98.4 2.8E-07 6E-12 89.9 4.3 55 153-219 7-61 (584)
112 PRK00440 rfc replication facto 98.4 4.5E-07 9.8E-12 81.1 5.3 52 153-217 11-62 (319)
113 PRK14954 DNA polymerase III su 98.4 3.5E-07 7.5E-12 89.8 4.7 55 153-219 10-64 (620)
114 PRK05896 DNA polymerase III su 98.4 3.7E-07 7.9E-12 88.9 4.7 54 153-218 10-63 (605)
115 TIGR02397 dnaX_nterm DNA polym 98.4 4E-07 8.7E-12 82.9 4.8 54 153-218 8-61 (355)
116 TIGR00764 lon_rel lon-related 98.4 4.1E-07 8.8E-12 89.3 5.1 80 151-245 10-99 (608)
117 PRK07133 DNA polymerase III su 98.4 3.6E-07 7.8E-12 90.6 4.5 55 153-219 12-66 (725)
118 PRK12323 DNA polymerase III su 98.3 3.2E-07 7E-12 89.8 4.0 56 152-219 9-64 (700)
119 PRK14951 DNA polymerase III su 98.3 3.6E-07 7.7E-12 89.5 4.3 55 153-219 10-64 (618)
120 PRK08181 transposase; Validate 98.3 3.7E-07 8.1E-12 81.0 4.0 42 192-233 105-149 (269)
121 KOG0742 AAA+-type ATPase [Post 98.3 3.4E-07 7.5E-12 84.7 3.8 70 155-229 351-420 (630)
122 smart00382 AAA ATPases associa 98.3 4.1E-07 9E-12 69.5 3.7 38 193-230 2-42 (148)
123 PRK05563 DNA polymerase III su 98.3 4.1E-07 9E-12 88.5 4.5 55 153-219 10-64 (559)
124 PRK07994 DNA polymerase III su 98.3 3.8E-07 8.1E-12 89.7 4.2 55 153-219 10-64 (647)
125 PF07726 AAA_3: ATPase family 98.3 2.9E-07 6.3E-12 72.8 2.5 41 196-236 2-44 (131)
126 PRK07003 DNA polymerase III su 98.3 3.9E-07 8.4E-12 90.4 3.9 56 152-219 9-64 (830)
127 PRK14965 DNA polymerase III su 98.3 4.9E-07 1.1E-11 88.3 4.5 55 153-219 10-64 (576)
128 PRK09111 DNA polymerase III su 98.3 5.1E-07 1.1E-11 88.3 4.5 55 154-220 19-73 (598)
129 PF13207 AAA_17: AAA domain; P 98.3 4.3E-07 9.3E-12 69.9 3.2 31 196-226 2-32 (121)
130 PRK08116 hypothetical protein; 98.3 6.7E-07 1.4E-11 79.3 4.8 42 193-234 114-158 (268)
131 PRK00149 dnaA chromosomal repl 98.3 1.3E-06 2.7E-11 82.9 6.8 43 194-236 149-196 (450)
132 PRK14970 DNA polymerase III su 98.3 6.8E-07 1.5E-11 82.2 4.8 56 152-219 10-65 (367)
133 PRK06305 DNA polymerase III su 98.3 6E-07 1.3E-11 85.2 4.5 54 154-219 12-65 (451)
134 PRK12377 putative replication 98.3 6.8E-07 1.5E-11 78.5 4.5 41 193-233 101-144 (248)
135 TIGR00362 DnaA chromosomal rep 98.3 1.6E-06 3.4E-11 81.0 7.0 43 193-235 136-183 (405)
136 PRK08939 primosomal protein Dn 98.3 8.1E-07 1.8E-11 80.3 4.8 42 192-233 155-199 (306)
137 PRK06647 DNA polymerase III su 98.3 7E-07 1.5E-11 86.9 4.3 55 153-219 10-64 (563)
138 PRK14953 DNA polymerase III su 98.3 7.6E-07 1.7E-11 85.2 4.4 55 153-219 10-64 (486)
139 TIGR02903 spore_lon_C ATP-depe 98.3 1E-06 2.2E-11 86.6 5.1 62 155-229 150-221 (615)
140 PRK14950 DNA polymerase III su 98.3 7.7E-07 1.7E-11 87.1 4.2 56 152-219 9-64 (585)
141 PRK06893 DNA replication initi 98.3 2.1E-06 4.5E-11 74.3 6.5 24 194-217 40-63 (229)
142 PRK06835 DNA replication prote 98.2 1.1E-06 2.5E-11 80.1 5.0 41 193-233 183-226 (329)
143 PRK07764 DNA polymerase III su 98.2 7.9E-07 1.7E-11 89.8 4.2 55 153-219 9-63 (824)
144 PRK06526 transposase; Provisio 98.2 6.6E-07 1.4E-11 78.8 3.2 42 192-233 97-141 (254)
145 KOG1942 DNA helicase, TBP-inte 98.2 7.9E-07 1.7E-11 79.3 3.4 72 159-238 38-111 (456)
146 PHA02244 ATPase-like protein 98.2 1.4E-06 3.1E-11 80.3 5.2 34 193-226 119-152 (383)
147 TIGR02928 orc1/cdc6 family rep 98.2 9.4E-07 2E-11 80.8 3.9 60 159-227 15-83 (365)
148 PF13671 AAA_33: AAA domain; P 98.2 1.4E-06 3E-11 68.8 4.3 39 196-236 2-40 (143)
149 PRK06620 hypothetical protein; 98.2 2.1E-06 4.5E-11 73.7 5.4 29 194-222 45-73 (214)
150 PRK14959 DNA polymerase III su 98.2 1.2E-06 2.7E-11 85.6 4.4 55 153-219 10-64 (624)
151 PRK08084 DNA replication initi 98.2 4.2E-06 9.1E-11 72.7 7.2 25 194-218 46-70 (235)
152 PRK07952 DNA replication prote 98.2 1.7E-06 3.7E-11 75.8 4.5 41 194-234 100-143 (244)
153 PRK14948 DNA polymerase III su 98.2 1.6E-06 3.5E-11 85.3 4.6 54 154-219 11-64 (620)
154 COG0714 MoxR-like ATPases [Gen 98.2 1.9E-06 4.1E-11 78.4 4.7 36 193-228 43-78 (329)
155 PRK13407 bchI magnesium chelat 98.2 1.9E-06 4.2E-11 78.7 4.5 51 154-217 3-53 (334)
156 PRK14088 dnaA chromosomal repl 98.2 4.4E-06 9.6E-11 79.1 7.0 41 194-234 131-176 (440)
157 PRK06921 hypothetical protein; 98.1 3.4E-06 7.3E-11 74.8 5.6 41 192-232 116-160 (266)
158 PRK08451 DNA polymerase III su 98.1 2.3E-06 4.9E-11 82.6 4.7 54 153-218 8-61 (535)
159 PRK13948 shikimate kinase; Pro 98.1 2.3E-06 5E-11 71.7 4.1 44 192-237 9-52 (182)
160 PRK08727 hypothetical protein; 98.1 6.9E-06 1.5E-10 71.3 7.0 39 194-232 42-83 (233)
161 PF06309 Torsin: Torsin; Inte 98.1 2.2E-06 4.8E-11 67.6 3.4 51 159-217 25-77 (127)
162 COG0606 Predicted ATPase with 98.1 1.9E-06 4.2E-11 81.1 3.5 48 155-217 175-222 (490)
163 PRK09183 transposase/IS protei 98.1 3.3E-06 7.2E-11 74.5 4.6 42 192-233 101-145 (259)
164 PRK00411 cdc6 cell division co 98.1 3E-06 6.5E-11 78.4 4.3 62 157-227 28-94 (394)
165 KOG0745 Putative ATP-dependent 98.1 2.2E-06 4.7E-11 79.8 2.8 44 194-237 227-271 (564)
166 PF00308 Bac_DnaA: Bacterial d 98.0 1.2E-05 2.7E-10 69.1 6.9 40 195-234 36-80 (219)
167 CHL00081 chlI Mg-protoporyphyr 98.0 4.7E-06 1E-10 76.5 4.1 54 151-217 9-62 (350)
168 PRK05642 DNA replication initi 98.0 5.4E-06 1.2E-10 72.0 4.3 40 193-232 45-87 (234)
169 PRK07471 DNA polymerase III su 98.0 7.2E-06 1.6E-10 75.9 5.2 52 154-217 14-65 (365)
170 PF03215 Rad17: Rad17 cell cyc 98.0 7E-06 1.5E-10 79.1 5.2 63 154-224 14-76 (519)
171 PRK14971 DNA polymerase III su 98.0 5.7E-06 1.2E-10 81.3 4.5 53 154-218 12-64 (614)
172 TIGR00602 rad24 checkpoint pro 98.0 4.6E-06 9.9E-11 82.1 3.7 64 152-223 77-140 (637)
173 PRK05564 DNA polymerase III su 98.0 6.7E-06 1.4E-10 74.2 4.5 49 157-217 2-50 (313)
174 PF00910 RNA_helicase: RNA hel 98.0 5.1E-06 1.1E-10 63.4 3.2 44 196-239 1-53 (107)
175 PRK12422 chromosomal replicati 98.0 7E-06 1.5E-10 77.8 4.8 41 194-234 142-185 (445)
176 PF00158 Sigma54_activat: Sigm 98.0 1E-05 2.2E-10 67.0 5.1 59 161-230 1-62 (168)
177 KOG0736 Peroxisome assembly fa 98.0 1E-05 2.2E-10 79.9 5.7 51 192-242 430-480 (953)
178 PRK08154 anaerobic benzoate ca 98.0 8.3E-06 1.8E-10 73.7 4.7 63 167-236 112-174 (309)
179 PRK14086 dnaA chromosomal repl 97.9 1.2E-05 2.7E-10 78.4 5.3 43 194-236 315-362 (617)
180 cd02021 GntK Gluconate kinase 97.9 8E-06 1.7E-10 65.4 3.4 30 196-225 2-31 (150)
181 COG0470 HolB ATPase involved i 97.9 1.2E-05 2.6E-10 71.9 4.8 48 160-218 2-49 (325)
182 KOG0991 Replication factor C, 97.9 8.7E-06 1.9E-10 70.7 3.3 53 152-217 20-72 (333)
183 COG2607 Predicted ATPase (AAA+ 97.9 1.6E-05 3.4E-10 69.2 4.9 69 152-229 53-124 (287)
184 PRK13531 regulatory ATPase Rav 97.9 1.4E-05 3E-10 76.2 4.8 44 160-218 21-64 (498)
185 PHA00729 NTP-binding motif con 97.9 1.3E-05 2.8E-10 69.4 4.2 25 194-218 18-42 (226)
186 PRK11331 5-methylcytosine-spec 97.9 2E-05 4.3E-10 74.5 5.8 46 158-218 174-219 (459)
187 COG2812 DnaX DNA polymerase II 97.9 6.7E-06 1.5E-10 78.8 2.5 57 152-220 9-65 (515)
188 PF13191 AAA_16: AAA ATPase do 97.9 1.2E-05 2.6E-10 65.9 3.5 59 161-229 2-63 (185)
189 PRK13765 ATP-dependent proteas 97.9 1.6E-05 3.6E-10 78.3 4.9 56 149-219 21-76 (637)
190 PRK13946 shikimate kinase; Pro 97.9 1.7E-05 3.7E-10 66.1 4.4 33 193-225 10-42 (184)
191 PLN02200 adenylate kinase fami 97.8 1.8E-05 3.8E-10 68.9 4.5 42 191-234 41-82 (234)
192 cd02020 CMPK Cytidine monophos 97.8 1.1E-05 2.4E-10 63.7 3.0 30 196-225 2-31 (147)
193 PRK07399 DNA polymerase III su 97.8 1.7E-05 3.6E-10 72.0 4.3 49 157-217 2-50 (314)
194 PRK09112 DNA polymerase III su 97.8 2.6E-05 5.6E-10 71.8 5.0 54 154-219 18-71 (351)
195 PRK14087 dnaA chromosomal repl 97.8 2.3E-05 5E-10 74.5 4.7 42 194-235 142-188 (450)
196 KOG1969 DNA replication checkp 97.8 1.7E-05 3.8E-10 77.9 3.7 81 148-228 260-361 (877)
197 TIGR02442 Cob-chelat-sub cobal 97.8 2.5E-05 5.4E-10 77.2 4.9 48 157-217 2-49 (633)
198 COG1474 CDC6 Cdc6-related prot 97.8 2.2E-05 4.7E-10 72.7 3.8 62 159-229 17-83 (366)
199 KOG3347 Predicted nucleotide k 97.8 1.7E-05 3.7E-10 64.3 2.7 32 194-225 8-39 (176)
200 PHA02624 large T antigen; Prov 97.8 2.3E-05 4.9E-10 76.2 4.0 39 189-227 427-465 (647)
201 TIGR01817 nifA Nif-specific re 97.7 3.1E-05 6.6E-10 75.0 4.4 63 156-229 193-258 (534)
202 PRK06547 hypothetical protein; 97.7 2.8E-05 6.1E-10 64.5 3.3 35 191-225 13-47 (172)
203 PF13401 AAA_22: AAA domain; P 97.7 3.3E-05 7.1E-10 59.9 3.4 36 194-229 5-48 (131)
204 PRK08058 DNA polymerase III su 97.7 3.6E-05 7.9E-10 70.2 3.6 49 157-217 3-52 (329)
205 PLN02674 adenylate kinase 97.6 5.7E-05 1.2E-09 66.2 4.5 40 192-233 30-69 (244)
206 TIGR02030 BchI-ChlI magnesium 97.6 5.5E-05 1.2E-09 69.3 4.6 48 157-217 2-49 (337)
207 PF08298 AAA_PrkA: PrkA AAA do 97.6 5E-05 1.1E-09 69.5 4.1 59 159-225 61-121 (358)
208 PTZ00112 origin recognition co 97.6 7.7E-05 1.7E-09 75.3 5.4 61 159-227 755-825 (1164)
209 PLN02199 shikimate kinase 97.6 5.1E-05 1.1E-09 68.1 3.8 43 192-236 101-144 (303)
210 PRK05541 adenylylsulfate kinas 97.6 7.8E-05 1.7E-09 61.4 4.3 40 192-231 6-48 (176)
211 cd02027 APSK Adenosine 5'-phos 97.6 8E-05 1.7E-09 60.1 4.2 36 196-231 2-40 (149)
212 PF13238 AAA_18: AAA domain; P 97.5 4.5E-05 9.8E-10 58.6 2.3 22 196-217 1-22 (129)
213 PRK09087 hypothetical protein; 97.5 6.1E-05 1.3E-09 65.2 3.3 31 194-224 45-75 (226)
214 PF13086 AAA_11: AAA domain; P 97.5 7.2E-05 1.6E-09 62.9 3.7 22 196-217 20-41 (236)
215 PRK15424 propionate catabolism 97.5 8.5E-05 1.8E-09 72.0 4.4 63 156-229 216-289 (538)
216 PF13245 AAA_19: Part of AAA d 97.5 9.5E-05 2.1E-09 53.2 3.6 32 196-227 13-51 (76)
217 PRK15429 formate hydrogenlyase 97.5 8E-05 1.7E-09 74.2 4.1 63 156-229 373-438 (686)
218 TIGR01618 phage_P_loop phage n 97.5 6.8E-05 1.5E-09 64.7 3.2 23 193-215 12-34 (220)
219 KOG0735 AAA+-type ATPase [Post 97.5 6E-05 1.3E-09 74.1 2.8 39 193-231 431-473 (952)
220 PRK11608 pspF phage shock prot 97.5 0.00011 2.5E-09 66.8 4.4 61 158-229 5-68 (326)
221 COG0593 DnaA ATPase involved i 97.5 0.00023 5E-09 66.6 6.4 43 194-236 114-161 (408)
222 PRK06696 uridine kinase; Valid 97.5 0.00013 2.8E-09 62.7 4.2 38 193-230 22-62 (223)
223 PLN02459 probable adenylate ki 97.4 0.00014 3.1E-09 64.2 4.2 36 195-232 31-66 (261)
224 PRK05022 anaerobic nitric oxid 97.4 0.00014 3.1E-09 70.0 4.6 62 157-229 185-249 (509)
225 TIGR00678 holB DNA polymerase 97.4 9.3E-05 2E-09 61.6 2.8 27 192-218 13-39 (188)
226 TIGR03499 FlhF flagellar biosy 97.4 0.00054 1.2E-08 61.2 7.9 26 192-217 193-218 (282)
227 TIGR02329 propionate_PrpR prop 97.4 0.00013 2.9E-09 70.5 4.3 63 156-229 209-274 (526)
228 PF13177 DNA_pol3_delta2: DNA 97.4 0.00019 4.1E-09 58.9 4.5 43 163-217 1-43 (162)
229 PRK11388 DNA-binding transcrip 97.4 0.00015 3.2E-09 71.7 4.5 64 155-229 321-387 (638)
230 cd02019 NK Nucleoside/nucleoti 97.4 0.00016 3.6E-09 50.7 3.4 22 196-217 2-23 (69)
231 COG0542 clpA ATP-binding subun 97.4 0.00016 3.5E-09 72.3 4.5 76 156-244 167-254 (786)
232 PF06414 Zeta_toxin: Zeta toxi 97.4 0.00011 2.4E-09 61.9 2.7 43 191-233 13-56 (199)
233 COG1221 PspF Transcriptional r 97.4 0.00025 5.3E-09 66.3 4.9 66 156-232 75-144 (403)
234 TIGR02974 phageshock_pspF psp 97.4 0.00023 5.1E-09 64.9 4.7 57 162-229 2-61 (329)
235 PF13173 AAA_14: AAA domain 97.3 0.00016 3.6E-09 56.6 3.2 36 194-229 3-40 (128)
236 TIGR02237 recomb_radB DNA repa 97.3 0.00018 3.9E-09 60.8 3.6 40 189-228 8-50 (209)
237 KOG0741 AAA+-type ATPase [Post 97.3 0.00017 3.8E-09 68.9 3.8 39 192-230 537-575 (744)
238 PF14532 Sigma54_activ_2: Sigm 97.3 0.00011 2.3E-09 58.4 2.1 56 163-229 2-60 (138)
239 PRK10820 DNA-binding transcrip 97.3 0.00024 5.2E-09 68.7 4.7 66 154-230 199-267 (520)
240 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00019 4E-09 57.3 3.2 30 191-220 20-49 (133)
241 TIGR03015 pepcterm_ATPase puta 97.3 0.00016 3.4E-09 63.2 3.0 24 195-218 45-68 (269)
242 PF01583 APS_kinase: Adenylyls 97.3 0.00023 5E-09 58.3 3.8 39 195-233 4-45 (156)
243 PF12774 AAA_6: Hydrolytic ATP 97.3 0.00022 4.8E-09 62.0 3.6 40 191-230 30-69 (231)
244 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.00027 5.8E-09 61.3 3.9 39 189-227 17-58 (237)
245 cd01394 radB RadB. The archaea 97.3 0.00024 5.2E-09 60.4 3.5 39 189-227 15-56 (218)
246 PHA02774 E1; Provisional 97.2 0.00028 6.1E-09 68.5 3.9 28 194-221 435-462 (613)
247 PF04851 ResIII: Type III rest 97.2 0.00071 1.5E-08 54.8 5.7 43 192-234 24-67 (184)
248 PRK09361 radB DNA repair and r 97.2 0.00035 7.5E-09 59.8 3.9 39 189-227 19-60 (225)
249 COG3842 PotA ABC-type spermidi 97.2 0.00016 3.4E-09 66.5 1.8 30 188-217 24-55 (352)
250 PF06745 KaiC: KaiC; InterPro 97.2 0.00031 6.6E-09 60.2 3.5 38 189-226 15-56 (226)
251 PRK06067 flagellar accessory p 97.2 0.00041 8.9E-09 59.8 4.2 39 189-227 21-62 (234)
252 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.00042 9E-09 59.4 4.1 38 189-226 16-56 (229)
253 PLN02165 adenylate isopentenyl 97.2 0.00031 6.8E-09 64.1 3.5 31 195-225 45-75 (334)
254 TIGR00368 Mg chelatase-related 97.2 0.00029 6.3E-09 67.8 3.3 46 156-216 189-234 (499)
255 KOG3354 Gluconate kinase [Carb 97.1 0.00032 6.8E-09 57.4 2.8 37 191-229 9-46 (191)
256 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.00033 7.2E-09 61.7 3.1 38 189-226 32-72 (259)
257 PRK08099 bifunctional DNA-bind 97.1 0.00058 1.3E-08 64.0 4.9 43 193-235 219-261 (399)
258 TIGR02012 tigrfam_recA protein 97.1 0.00047 1E-08 62.7 4.1 41 189-229 51-94 (321)
259 COG0467 RAD55 RecA-superfamily 97.1 0.00041 8.8E-09 60.9 3.5 39 189-227 19-60 (260)
260 PRK05973 replicative DNA helic 97.1 0.00043 9.4E-09 60.4 3.5 37 189-225 60-99 (237)
261 COG1116 TauB ABC-type nitrate/ 97.1 0.00026 5.6E-09 61.9 2.0 32 186-217 20-53 (248)
262 PRK03846 adenylylsulfate kinas 97.1 0.00054 1.2E-08 57.7 3.9 40 193-232 24-66 (198)
263 PLN03210 Resistant to P. syrin 97.1 0.00053 1.2E-08 72.2 4.8 54 155-219 180-233 (1153)
264 PRK00771 signal recognition pa 97.1 0.00045 9.8E-09 65.4 3.8 37 191-227 93-132 (437)
265 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00064 1.4E-08 62.0 4.6 41 194-234 163-203 (325)
266 PRK08533 flagellar accessory p 97.1 0.00059 1.3E-08 59.1 4.2 39 189-227 20-61 (230)
267 PF13604 AAA_30: AAA domain; P 97.1 0.00084 1.8E-08 56.7 4.9 34 194-227 19-55 (196)
268 cd00071 GMPK Guanosine monopho 97.1 0.00048 1E-08 54.8 3.1 23 196-218 2-24 (137)
269 TIGR00455 apsK adenylylsulfate 97.1 0.00079 1.7E-08 55.8 4.5 40 192-231 17-59 (184)
270 KOG0990 Replication factor C, 97.0 0.00033 7.1E-09 63.3 2.1 55 152-219 34-88 (360)
271 COG1120 FepC ABC-type cobalami 97.0 0.0003 6.5E-09 62.1 1.9 46 186-231 19-68 (258)
272 PRK08699 DNA polymerase III su 97.0 0.00052 1.1E-08 62.6 3.5 28 191-218 19-46 (325)
273 PF01637 Arch_ATPase: Archaeal 97.0 0.00061 1.3E-08 57.3 3.7 26 192-217 19-44 (234)
274 PRK12337 2-phosphoglycerate ki 97.0 0.00067 1.5E-08 64.4 4.2 43 192-234 254-298 (475)
275 TIGR00064 ftsY signal recognit 97.0 0.00094 2E-08 59.4 4.8 36 191-226 70-108 (272)
276 PRK05707 DNA polymerase III su 97.0 0.00043 9.4E-09 63.2 2.7 28 192-219 21-48 (328)
277 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.00065 1.4E-08 58.2 3.7 40 189-228 15-63 (235)
278 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00074 1.6E-08 51.8 3.5 25 190-214 12-36 (107)
279 KOG1970 Checkpoint RAD17-RFC c 97.0 0.00071 1.5E-08 65.0 4.1 31 195-225 112-142 (634)
280 TIGR00376 DNA helicase, putati 97.0 0.00097 2.1E-08 66.1 4.9 41 194-234 174-222 (637)
281 PRK10416 signal recognition pa 97.0 0.00097 2.1E-08 60.7 4.5 35 192-226 113-150 (318)
282 PRK04328 hypothetical protein; 96.9 0.00089 1.9E-08 58.6 3.9 38 189-226 19-59 (249)
283 PF00931 NB-ARC: NB-ARC domain 96.9 0.00091 2E-08 58.8 3.9 25 192-216 18-42 (287)
284 smart00350 MCM minichromosome 96.9 0.001 2.3E-08 64.1 4.5 25 195-219 238-262 (509)
285 PRK07667 uridine kinase; Provi 96.9 0.00075 1.6E-08 56.7 3.0 35 196-230 20-57 (193)
286 cd00984 DnaB_C DnaB helicase C 96.9 0.00086 1.9E-08 57.7 3.4 37 189-225 9-49 (242)
287 PRK05537 bifunctional sulfate 96.9 0.0011 2.3E-08 65.0 4.4 41 195-235 394-438 (568)
288 cd00983 recA RecA is a bacter 96.9 0.00095 2.1E-08 60.9 3.8 39 190-228 52-93 (325)
289 cd00046 DEXDc DEAD-like helica 96.9 0.0013 2.7E-08 50.0 3.9 35 194-228 1-40 (144)
290 cd01393 recA_like RecA is a b 96.9 0.001 2.2E-08 56.7 3.6 39 189-227 15-62 (226)
291 KOG2680 DNA helicase TIP49, TB 96.8 0.00058 1.3E-08 61.5 2.1 40 192-231 65-106 (454)
292 PRK14738 gmk guanylate kinase; 96.8 0.00082 1.8E-08 57.1 3.0 24 193-216 13-36 (206)
293 cd01130 VirB11-like_ATPase Typ 96.8 0.00087 1.9E-08 55.9 3.1 28 190-217 22-49 (186)
294 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0013 2.9E-08 56.2 4.1 39 189-227 12-53 (224)
295 COG3829 RocR Transcriptional r 96.8 0.0016 3.5E-08 62.5 5.0 66 154-230 240-308 (560)
296 PF02367 UPF0079: Uncharacteri 96.8 0.00078 1.7E-08 53.0 2.4 31 191-221 13-43 (123)
297 PRK14722 flhF flagellar biosyn 96.8 0.00084 1.8E-08 62.3 2.9 26 192-217 136-161 (374)
298 PRK04220 2-phosphoglycerate ki 96.8 0.0011 2.3E-08 59.9 3.4 31 191-221 90-120 (301)
299 PRK11823 DNA repair protein Ra 96.8 0.0012 2.7E-08 62.6 4.1 43 189-231 76-121 (446)
300 PLN02840 tRNA dimethylallyltra 96.8 0.0011 2.4E-08 62.3 3.6 32 196-227 24-55 (421)
301 COG0529 CysC Adenylylsulfate k 96.8 0.0015 3.2E-08 54.6 3.9 39 193-231 23-64 (197)
302 TIGR02236 recomb_radA DNA repa 96.8 0.0012 2.7E-08 59.3 3.8 40 189-228 91-139 (310)
303 COG3839 MalK ABC-type sugar tr 96.8 0.00061 1.3E-08 62.3 1.7 28 190-217 24-53 (338)
304 PF00437 T2SE: Type II/IV secr 96.8 0.0015 3.2E-08 57.5 4.1 55 153-218 98-152 (270)
305 TIGR02655 circ_KaiC circadian 96.8 0.0013 2.9E-08 63.0 4.0 39 189-227 17-59 (484)
306 PRK12723 flagellar biosynthesi 96.7 0.0015 3.1E-08 61.1 4.0 26 192-217 173-198 (388)
307 TIGR02782 TrbB_P P-type conjug 96.7 0.0022 4.9E-08 57.8 5.0 26 192-217 131-156 (299)
308 PF00005 ABC_tran: ABC transpo 96.7 0.00089 1.9E-08 52.4 2.1 29 190-218 8-36 (137)
309 PRK10536 hypothetical protein; 96.7 0.0014 3.1E-08 57.9 3.5 22 195-216 76-97 (262)
310 COG1855 ATPase (PilT family) [ 96.7 0.0013 2.8E-08 62.1 3.4 25 193-217 263-287 (604)
311 PRK06964 DNA polymerase III su 96.7 0.0011 2.4E-08 60.9 2.9 29 191-219 19-47 (342)
312 PRK12724 flagellar biosynthesi 96.7 0.0031 6.8E-08 59.4 5.9 26 192-217 222-247 (432)
313 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.0015 3.3E-08 60.5 3.8 30 190-219 59-88 (362)
314 cd01121 Sms Sms (bacterial rad 96.7 0.0024 5.2E-08 59.3 5.1 49 181-229 68-121 (372)
315 TIGR02031 BchD-ChlD magnesium 96.7 0.0013 2.7E-08 64.7 3.3 34 194-227 17-52 (589)
316 cd01122 GP4d_helicase GP4d_hel 96.7 0.0015 3.3E-08 57.2 3.6 38 189-226 26-67 (271)
317 PRK13833 conjugal transfer pro 96.7 0.002 4.3E-08 58.8 4.2 26 192-217 143-168 (323)
318 PRK11889 flhF flagellar biosyn 96.7 0.0021 4.6E-08 60.2 4.5 26 192-217 240-265 (436)
319 TIGR02688 conserved hypothetic 96.6 0.0012 2.6E-08 62.2 2.6 26 191-216 207-232 (449)
320 PRK12726 flagellar biosynthesi 96.6 0.002 4.4E-08 60.0 4.1 51 164-217 180-230 (407)
321 cd01129 PulE-GspE PulE/GspE Th 96.6 0.0032 6.9E-08 55.8 5.2 47 156-217 57-104 (264)
322 PRK04301 radA DNA repair and r 96.6 0.0018 4E-08 58.6 3.7 40 189-228 98-146 (317)
323 PRK13894 conjugal transfer ATP 96.6 0.0039 8.4E-08 56.8 5.8 25 192-216 147-171 (319)
324 PTZ00202 tuzin; Provisional 96.6 0.004 8.8E-08 59.1 6.0 58 159-226 262-319 (550)
325 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0014 3E-08 55.6 2.5 28 190-217 27-54 (218)
326 cd01918 HprK_C HprK/P, the bif 96.6 0.0016 3.5E-08 52.9 2.7 24 193-216 14-37 (149)
327 PRK09354 recA recombinase A; P 96.6 0.0022 4.8E-08 59.0 3.9 39 190-228 57-98 (349)
328 PRK13851 type IV secretion sys 96.6 0.0015 3.3E-08 60.1 2.8 30 189-218 158-187 (344)
329 PF10662 PduV-EutP: Ethanolami 96.6 0.0016 3.4E-08 52.6 2.5 24 194-217 2-25 (143)
330 PRK13477 bifunctional pantoate 96.6 0.0019 4.1E-08 62.3 3.5 29 194-222 285-313 (512)
331 PRK08769 DNA polymerase III su 96.5 0.0026 5.7E-08 57.9 4.2 26 192-217 25-50 (319)
332 PRK10923 glnG nitrogen regulat 96.5 0.0027 5.8E-08 60.2 4.4 61 158-229 137-200 (469)
333 cd01128 rho_factor Transcripti 96.5 0.002 4.4E-08 56.6 3.3 28 192-219 15-42 (249)
334 COG0802 Predicted ATPase or ki 96.5 0.0019 4.1E-08 52.4 2.8 43 192-234 24-67 (149)
335 PF13555 AAA_29: P-loop contai 96.5 0.0023 4.9E-08 44.3 2.7 23 195-217 25-47 (62)
336 PF12775 AAA_7: P-loop contain 96.5 0.0015 3.2E-08 58.2 2.3 26 192-217 32-57 (272)
337 PF00519 PPV_E1_C: Papillomavi 96.5 0.0026 5.6E-08 59.2 3.9 36 189-224 258-293 (432)
338 KOG2170 ATPase of the AAA+ sup 96.5 0.0028 6E-08 57.0 4.0 65 160-235 83-149 (344)
339 TIGR02655 circ_KaiC circadian 96.5 0.002 4.4E-08 61.8 3.3 44 189-232 259-305 (484)
340 PRK13764 ATPase; Provisional 96.5 0.0018 3.9E-08 63.5 3.0 27 192-218 256-282 (602)
341 COG2804 PulE Type II secretory 96.5 0.0031 6.7E-08 60.2 4.4 53 155-222 234-287 (500)
342 PRK14974 cell division protein 96.5 0.0022 4.8E-08 58.8 3.3 26 192-217 139-164 (336)
343 cd03258 ABC_MetN_methionine_tr 96.5 0.0019 4.2E-08 55.4 2.6 28 190-217 28-55 (233)
344 cd03262 ABC_HisP_GlnQ_permease 96.5 0.002 4.3E-08 54.4 2.6 28 190-217 23-50 (213)
345 PRK05703 flhF flagellar biosyn 96.4 0.0025 5.4E-08 60.2 3.5 37 192-228 220-261 (424)
346 TIGR00416 sms DNA repair prote 96.4 0.003 6.4E-08 60.2 4.0 50 181-230 80-134 (454)
347 PRK06871 DNA polymerase III su 96.4 0.0037 8E-08 57.1 4.4 27 192-218 23-49 (325)
348 COG4619 ABC-type uncharacteriz 96.4 0.0022 4.9E-08 53.4 2.7 28 190-217 26-53 (223)
349 TIGR02673 FtsE cell division A 96.4 0.0021 4.5E-08 54.4 2.6 28 190-217 25-52 (214)
350 TIGR03410 urea_trans_UrtE urea 96.4 0.0021 4.5E-08 55.1 2.6 28 190-217 23-50 (230)
351 PF08477 Miro: Miro-like prote 96.4 0.0025 5.3E-08 48.3 2.7 22 196-217 2-23 (119)
352 cd03292 ABC_FtsE_transporter F 96.4 0.0022 4.8E-08 54.2 2.8 28 190-217 24-51 (214)
353 cd03269 ABC_putative_ATPase Th 96.4 0.0023 5E-08 54.0 2.8 28 190-217 23-50 (210)
354 TIGR01425 SRP54_euk signal rec 96.4 0.0026 5.6E-08 60.1 3.3 36 192-227 99-137 (429)
355 TIGR02315 ABC_phnC phosphonate 96.4 0.0022 4.7E-08 55.4 2.7 27 191-217 26-52 (243)
356 PRK07993 DNA polymerase III su 96.4 0.0038 8.3E-08 57.2 4.3 27 191-217 22-48 (334)
357 cd03256 ABC_PhnC_transporter A 96.4 0.0022 4.7E-08 55.2 2.6 27 191-217 25-51 (241)
358 PLN02748 tRNA dimethylallyltra 96.4 0.003 6.5E-08 60.3 3.7 32 195-226 24-55 (468)
359 PRK10867 signal recognition pa 96.4 0.0029 6.3E-08 59.9 3.6 36 192-227 99-138 (433)
360 COG1126 GlnQ ABC-type polar am 96.4 0.0013 2.7E-08 56.7 1.0 43 186-228 19-65 (240)
361 PRK10646 ADP-binding protein; 96.4 0.0028 6.1E-08 51.7 3.0 30 191-220 26-55 (153)
362 COG2204 AtoC Response regulato 96.4 0.0042 9.1E-08 59.1 4.6 64 156-230 138-204 (464)
363 COG4178 ABC-type uncharacteriz 96.4 0.0022 4.7E-08 62.7 2.7 30 188-217 414-443 (604)
364 cd03247 ABCC_cytochrome_bd The 96.4 0.0023 5.1E-08 52.7 2.5 28 190-217 25-52 (178)
365 TIGR01420 pilT_fam pilus retra 96.4 0.0031 6.7E-08 57.9 3.5 25 194-218 123-147 (343)
366 TIGR02788 VirB11 P-type DNA tr 96.4 0.0028 6.1E-08 57.2 3.2 30 188-217 139-168 (308)
367 TIGR01166 cbiO cobalt transpor 96.4 0.0024 5.3E-08 53.1 2.6 28 190-217 15-42 (190)
368 TIGR03608 L_ocin_972_ABC putat 96.3 0.0023 5E-08 53.7 2.4 28 190-217 21-48 (206)
369 cd03301 ABC_MalK_N The N-termi 96.3 0.0027 5.8E-08 53.7 2.8 28 190-217 23-50 (213)
370 PRK13900 type IV secretion sys 96.3 0.0026 5.6E-08 58.3 2.8 29 190-218 157-185 (332)
371 TIGR00960 3a0501s02 Type II (G 96.3 0.0025 5.4E-08 54.1 2.5 27 191-217 27-53 (216)
372 PRK13541 cytochrome c biogenes 96.3 0.003 6.5E-08 52.9 3.0 28 190-217 23-50 (195)
373 cd03224 ABC_TM1139_LivF_branch 96.3 0.0024 5.1E-08 54.3 2.4 28 190-217 23-50 (222)
374 cd03278 ABC_SMC_barmotin Barmo 96.3 0.0019 4.1E-08 54.6 1.8 24 195-218 24-47 (197)
375 TIGR02238 recomb_DMC1 meiotic 96.3 0.0033 7.1E-08 57.1 3.4 40 189-228 92-140 (313)
376 cd03228 ABCC_MRP_Like The MRP 96.3 0.0027 5.9E-08 52.1 2.6 28 190-217 25-52 (171)
377 cd03260 ABC_PstB_phosphate_tra 96.3 0.0027 5.8E-08 54.3 2.6 28 190-217 23-50 (227)
378 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0029 6.2E-08 53.4 2.7 27 191-217 25-51 (211)
379 TIGR02211 LolD_lipo_ex lipopro 96.3 0.0026 5.7E-08 54.0 2.5 28 190-217 28-55 (221)
380 TIGR01663 PNK-3'Pase polynucle 96.3 0.0033 7.1E-08 60.9 3.4 32 193-224 369-400 (526)
381 cd03261 ABC_Org_Solvent_Resist 96.3 0.0029 6.2E-08 54.4 2.8 28 190-217 23-50 (235)
382 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.0027 5.8E-08 50.8 2.4 28 190-217 23-50 (144)
383 TIGR02915 PEP_resp_reg putativ 96.3 0.0047 1E-07 58.1 4.4 61 159-230 139-202 (445)
384 PRK09376 rho transcription ter 96.3 0.0027 5.8E-08 59.3 2.7 24 195-218 171-194 (416)
385 cd03229 ABC_Class3 This class 96.3 0.0029 6.2E-08 52.3 2.6 27 191-217 24-50 (178)
386 COG5271 MDN1 AAA ATPase contai 96.3 0.0028 6.1E-08 67.8 3.0 37 192-228 1542-1578(4600)
387 cd03226 ABC_cobalt_CbiO_domain 96.3 0.0028 6.1E-08 53.4 2.5 28 190-217 23-50 (205)
388 cd03234 ABCG_White The White s 96.3 0.0026 5.7E-08 54.4 2.4 29 190-218 30-58 (226)
389 cd03235 ABC_Metallic_Cations A 96.3 0.0028 6E-08 53.7 2.5 27 191-217 23-49 (213)
390 PRK11124 artP arginine transpo 96.3 0.0029 6.3E-08 54.6 2.7 28 190-217 25-52 (242)
391 PRK10247 putative ABC transpor 96.3 0.0029 6.2E-08 54.2 2.6 27 191-217 31-57 (225)
392 cd03264 ABC_drug_resistance_li 96.3 0.0029 6.2E-08 53.5 2.6 27 190-217 23-49 (211)
393 PRK14247 phosphate ABC transpo 96.3 0.003 6.5E-08 54.9 2.7 28 190-217 26-53 (250)
394 PRK09862 putative ATP-dependen 96.3 0.0029 6.3E-08 61.0 2.8 46 157-217 189-234 (506)
395 COG3604 FhlA Transcriptional r 96.3 0.0066 1.4E-07 58.0 5.1 67 155-232 219-288 (550)
396 cd03296 ABC_CysA_sulfate_impor 96.2 0.0029 6.3E-08 54.6 2.6 28 190-217 25-52 (239)
397 cd03223 ABCD_peroxisomal_ALDP 96.2 0.0032 6.8E-08 51.6 2.6 28 190-217 24-51 (166)
398 cd03219 ABC_Mj1267_LivG_branch 96.2 0.0029 6.2E-08 54.4 2.4 27 191-217 24-50 (236)
399 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0028 6.1E-08 54.0 2.4 28 190-217 27-54 (220)
400 PRK10895 lipopolysaccharide AB 96.2 0.0031 6.6E-08 54.5 2.6 28 190-217 26-53 (241)
401 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.0031 6.6E-08 54.4 2.6 28 190-217 24-51 (236)
402 cd03263 ABC_subfamily_A The AB 96.2 0.0034 7.5E-08 53.3 2.8 27 191-217 26-52 (220)
403 cd03218 ABC_YhbG The ABC trans 96.2 0.0033 7.2E-08 53.8 2.7 28 190-217 23-50 (232)
404 cd03216 ABC_Carb_Monos_I This 96.2 0.0032 6.9E-08 51.4 2.5 28 190-217 23-50 (163)
405 PF12780 AAA_8: P-loop contain 96.2 0.0063 1.4E-07 54.1 4.5 56 160-227 9-65 (268)
406 cd03254 ABCC_Glucan_exporter_l 96.2 0.0032 7E-08 53.8 2.6 26 192-217 28-53 (229)
407 cd03257 ABC_NikE_OppD_transpor 96.2 0.0033 7.2E-08 53.6 2.6 27 191-217 29-55 (228)
408 TIGR01978 sufC FeS assembly AT 96.2 0.0033 7.2E-08 54.1 2.7 26 191-216 24-49 (243)
409 PRK11629 lolD lipoprotein tran 96.2 0.0035 7.5E-08 53.9 2.8 27 191-217 33-59 (233)
410 PRK11264 putative amino-acid A 96.2 0.0033 7.2E-08 54.5 2.7 28 190-217 26-53 (250)
411 PLN03187 meiotic recombination 96.2 0.0049 1.1E-07 56.7 3.9 39 189-227 122-169 (344)
412 TIGR03005 ectoine_ehuA ectoine 96.2 0.0033 7.1E-08 54.7 2.6 28 190-217 23-50 (252)
413 cd03215 ABC_Carb_Monos_II This 96.2 0.0032 7E-08 52.1 2.4 28 190-217 23-50 (182)
414 COG4525 TauB ABC-type taurine 96.2 0.0039 8.4E-08 53.2 2.8 27 191-217 29-55 (259)
415 cd03251 ABCC_MsbA MsbA is an e 96.2 0.0034 7.3E-08 53.9 2.6 28 190-217 25-52 (234)
416 cd03246 ABCC_Protease_Secretio 96.2 0.0043 9.4E-08 50.9 3.1 27 191-217 26-52 (173)
417 cd03283 ABC_MutS-like MutS-lik 96.2 0.0034 7.3E-08 53.2 2.5 26 190-215 22-47 (199)
418 cd03267 ABC_NatA_like Similar 96.2 0.0031 6.7E-08 54.5 2.3 27 191-217 45-71 (236)
419 cd03213 ABCG_EPDR ABCG transpo 96.2 0.0034 7.4E-08 52.6 2.5 28 190-217 32-59 (194)
420 TIGR02770 nickel_nikD nickel i 96.2 0.0034 7.4E-08 53.9 2.5 29 190-218 9-37 (230)
421 PRK10771 thiQ thiamine transpo 96.2 0.0037 7.9E-08 53.7 2.7 28 190-217 22-49 (232)
422 PRK11860 bifunctional 3-phosph 96.2 0.0057 1.2E-07 60.9 4.4 34 195-230 444-477 (661)
423 PRK11248 tauB taurine transpor 96.2 0.0035 7.6E-08 54.9 2.6 28 190-217 24-51 (255)
424 PRK10908 cell division protein 96.1 0.0036 7.9E-08 53.3 2.6 28 190-217 25-52 (222)
425 cd03265 ABC_DrrA DrrA is the A 96.1 0.0037 8E-08 53.2 2.7 28 190-217 23-50 (220)
426 TIGR01277 thiQ thiamine ABC tr 96.1 0.0033 7.1E-08 53.3 2.3 29 189-217 20-48 (213)
427 PRK09302 circadian clock prote 96.1 0.0052 1.1E-07 59.2 4.0 46 189-234 27-76 (509)
428 cd03266 ABC_NatA_sodium_export 96.1 0.0036 7.8E-08 53.1 2.5 27 191-217 29-55 (218)
429 cd03230 ABC_DR_subfamily_A Thi 96.1 0.0036 7.9E-08 51.4 2.5 27 191-217 24-50 (173)
430 cd03259 ABC_Carb_Solutes_like 96.1 0.0038 8.2E-08 52.8 2.6 27 191-217 24-50 (213)
431 TIGR00959 ffh signal recogniti 96.1 0.0053 1.1E-07 58.1 3.8 36 192-227 98-137 (428)
432 cd03244 ABCC_MRP_domain2 Domai 96.1 0.0031 6.7E-08 53.6 2.1 27 191-217 28-54 (221)
433 PRK13538 cytochrome c biogenes 96.1 0.0037 8.1E-08 52.7 2.6 28 190-217 24-51 (204)
434 cd03214 ABC_Iron-Siderophores_ 96.1 0.0038 8.3E-08 51.6 2.6 28 190-217 22-49 (180)
435 COG1239 ChlI Mg-chelatase subu 96.1 0.0055 1.2E-07 57.3 3.8 50 155-217 13-62 (423)
436 PRK13540 cytochrome c biogenes 96.1 0.0045 9.7E-08 52.0 3.0 27 191-217 25-51 (200)
437 PRK05439 pantothenate kinase; 96.1 0.0051 1.1E-07 55.8 3.5 24 195-218 88-111 (311)
438 cd00879 Sar1 Sar1 subfamily. 96.1 0.006 1.3E-07 50.2 3.7 30 186-215 11-41 (190)
439 TIGR02323 CP_lyasePhnK phospho 96.1 0.0037 8E-08 54.4 2.5 28 190-217 26-53 (253)
440 cd03250 ABCC_MRP_domain1 Domai 96.1 0.004 8.6E-08 52.4 2.6 28 190-217 28-55 (204)
441 PRK10584 putative ABC transpor 96.1 0.0038 8.2E-08 53.4 2.6 28 190-217 33-60 (228)
442 PRK09493 glnQ glutamine ABC tr 96.1 0.0038 8.3E-08 53.8 2.6 28 190-217 24-51 (240)
443 cd03268 ABC_BcrA_bacitracin_re 96.1 0.0038 8.2E-08 52.6 2.5 27 191-217 24-50 (208)
444 TIGR02858 spore_III_AA stage I 96.1 0.0039 8.4E-08 55.5 2.6 24 194-217 112-135 (270)
445 COG1122 CbiO ABC-type cobalt t 96.1 0.0037 8.1E-08 54.5 2.4 40 190-229 27-68 (235)
446 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.0033 7.1E-08 53.0 2.0 27 191-217 32-58 (207)
447 PRK14267 phosphate ABC transpo 96.1 0.004 8.8E-08 54.1 2.6 28 190-217 27-54 (253)
448 PF01926 MMR_HSR1: 50S ribosom 96.1 0.0043 9.3E-08 47.2 2.5 21 196-216 2-22 (116)
449 COG1124 DppF ABC-type dipeptid 96.1 0.0041 9E-08 54.3 2.6 40 191-230 31-72 (252)
450 cd03232 ABC_PDR_domain2 The pl 96.1 0.0039 8.5E-08 52.1 2.4 27 190-216 30-56 (192)
451 PRK12608 transcription termina 96.1 0.0043 9.4E-08 57.6 2.9 24 195-218 135-158 (380)
452 PRK06090 DNA polymerase III su 96.1 0.0071 1.5E-07 55.1 4.3 26 192-217 24-49 (319)
453 TIGR02533 type_II_gspE general 96.1 0.0085 1.8E-07 57.6 5.0 48 156-218 219-267 (486)
454 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.0054 1.2E-07 56.7 3.5 24 194-217 134-158 (358)
455 PRK14250 phosphate ABC transpo 96.1 0.0041 8.9E-08 53.8 2.6 27 191-217 27-53 (241)
456 cd04155 Arl3 Arl3 subfamily. 96.1 0.0042 9.1E-08 50.1 2.5 23 194-216 15-37 (173)
457 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.007 1.5E-07 43.4 3.4 22 196-217 2-23 (99)
458 PRK14262 phosphate ABC transpo 96.1 0.0041 9E-08 54.0 2.6 28 190-217 26-53 (250)
459 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.0043 9.2E-08 50.0 2.5 29 190-218 22-50 (157)
460 COG1125 OpuBA ABC-type proline 96.0 0.0021 4.5E-08 56.7 0.7 32 186-217 18-51 (309)
461 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.0 0.0048 1E-07 53.1 3.0 27 191-217 27-53 (238)
462 PRK13543 cytochrome c biogenes 96.0 0.0042 9E-08 52.8 2.5 28 190-217 34-61 (214)
463 PRK09270 nucleoside triphospha 96.0 0.0047 1E-07 53.2 2.9 27 192-218 32-58 (229)
464 PRK12269 bifunctional cytidyla 96.0 0.0043 9.3E-08 63.4 3.0 27 196-222 37-63 (863)
465 TIGR00554 panK_bact pantothena 96.0 0.0066 1.4E-07 54.6 3.9 26 193-218 62-87 (290)
466 cd03253 ABCC_ATM1_transporter 96.0 0.0042 9.2E-08 53.3 2.5 27 191-217 25-51 (236)
467 PRK13539 cytochrome c biogenes 96.0 0.0043 9.4E-08 52.4 2.5 27 191-217 26-52 (207)
468 PRK11361 acetoacetate metaboli 96.0 0.0069 1.5E-07 57.0 4.1 37 194-230 167-206 (457)
469 cd03297 ABC_ModC_molybdenum_tr 96.0 0.0041 8.9E-08 52.7 2.4 27 190-217 21-47 (214)
470 cd03245 ABCC_bacteriocin_expor 96.0 0.0043 9.4E-08 52.7 2.5 27 191-217 28-54 (220)
471 PRK14242 phosphate transporter 96.0 0.0042 9.1E-08 54.0 2.5 28 190-217 29-56 (253)
472 PRK11701 phnK phosphonate C-P 96.0 0.0042 9.1E-08 54.3 2.4 28 190-217 29-56 (258)
473 PRK11300 livG leucine/isoleuci 96.0 0.0042 9.1E-08 54.0 2.4 28 190-217 28-55 (255)
474 TIGR03740 galliderm_ABC gallid 96.0 0.0045 9.8E-08 52.8 2.6 28 190-217 23-50 (223)
475 cd03252 ABCC_Hemolysin The ABC 96.0 0.0044 9.6E-08 53.3 2.5 27 191-217 26-52 (237)
476 PRK13547 hmuV hemin importer A 96.0 0.0047 1E-07 54.8 2.7 28 190-217 24-51 (272)
477 PRK14256 phosphate ABC transpo 96.0 0.0053 1.2E-07 53.4 3.1 28 190-217 27-54 (252)
478 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.0 0.0044 9.6E-08 53.1 2.5 28 190-217 45-72 (224)
479 PF06431 Polyoma_lg_T_C: Polyo 96.0 0.0086 1.9E-07 55.3 4.4 37 191-227 153-189 (417)
480 cd03295 ABC_OpuCA_Osmoprotecti 96.0 0.0046 1E-07 53.4 2.6 28 190-217 24-51 (242)
481 cd03237 ABC_RNaseL_inhibitor_d 96.0 0.0057 1.2E-07 53.4 3.2 25 193-217 25-49 (246)
482 PRK15177 Vi polysaccharide exp 96.0 0.0048 1E-07 52.6 2.6 28 190-217 10-37 (213)
483 TIGR00750 lao LAO/AO transport 96.0 0.0069 1.5E-07 54.5 3.8 26 192-217 33-58 (300)
484 PRK11247 ssuB aliphatic sulfon 96.0 0.005 1.1E-07 54.2 2.8 27 191-217 36-62 (257)
485 KOG0060 Long-chain acyl-CoA tr 96.0 0.0046 9.9E-08 59.9 2.7 27 191-217 459-485 (659)
486 PRK11432 fbpC ferric transport 96.0 0.0045 9.8E-08 57.0 2.6 28 190-217 29-56 (351)
487 TIGR01189 ccmA heme ABC export 96.0 0.0049 1.1E-07 51.6 2.6 28 190-217 23-50 (198)
488 cd03290 ABCC_SUR1_N The SUR do 96.0 0.0058 1.2E-07 51.9 3.0 27 191-217 25-51 (218)
489 cd03248 ABCC_TAP TAP, the Tran 96.0 0.0053 1.2E-07 52.4 2.8 27 191-217 38-64 (226)
490 TIGR01184 ntrCD nitrate transp 96.0 0.0048 1E-07 53.1 2.6 28 190-217 8-35 (230)
491 PRK14261 phosphate ABC transpo 96.0 0.0046 1E-07 53.8 2.5 28 190-217 29-56 (253)
492 cd03222 ABC_RNaseL_inhibitor T 96.0 0.0059 1.3E-07 50.9 3.0 28 190-217 22-49 (177)
493 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.0053 1.1E-07 51.7 2.7 27 190-216 23-49 (200)
494 PRK09984 phosphonate/organopho 95.9 0.0048 1E-07 54.0 2.6 28 191-218 28-55 (262)
495 TIGR03411 urea_trans_UrtD urea 95.9 0.0049 1.1E-07 53.2 2.5 28 190-217 25-52 (242)
496 cd03233 ABC_PDR_domain1 The pl 95.9 0.0049 1.1E-07 52.0 2.5 29 190-218 30-58 (202)
497 PRK13645 cbiO cobalt transport 95.9 0.0049 1.1E-07 54.9 2.6 28 190-217 34-61 (289)
498 KOG1803 DNA helicase [Replicat 95.9 0.0041 8.9E-08 60.4 2.1 33 195-227 203-238 (649)
499 PRK10619 histidine/lysine/argi 95.9 0.0051 1.1E-07 53.7 2.6 28 190-217 28-55 (257)
500 PRK10575 iron-hydroxamate tran 95.9 0.0049 1.1E-07 54.2 2.5 28 190-217 34-61 (265)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-49 Score=351.85 Aligned_cols=212 Identities=52% Similarity=0.864 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeecc
Q 025979 34 LYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTI 113 (245)
Q Consensus 34 ~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (245)
.+.+...++++...+..+...+..+...++.++..++++++.++++|..++++.+.+++++++++++++++|++++.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~v 105 (406)
T COG1222 26 EDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFV 105 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceEEEEeCCCCeEEEeccCCc
Confidence 34455555666655555667777777788889999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCC
Q 025979 114 NRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP 193 (245)
Q Consensus 114 ~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~ 193 (245)
++..++||.+|+++.++++++.++|++.|+.++.|...+.|+++|+||||+++|+++|+|+|++|+++|++|.++|+.||
T Consensus 106 d~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PP 185 (406)
T COG1222 106 DRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPP 185 (406)
T ss_pred CHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
+|||||||||||||+||||+|++.+++|+++.+|+|++||+||+++.||++|
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF 237 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELF 237 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998
No 2
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-48 Score=334.41 Aligned_cols=216 Identities=82% Similarity=1.215 Sum_probs=212.6
Q ss_pred CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEE
Q 025979 30 DEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRI 109 (245)
Q Consensus 30 ~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 109 (245)
....++.++++++++++.+..+..+|+++..++++|+...+++.+++++.|.++|.+.+.+|.+.+++.+.+|++|++++
T Consensus 26 ~~~dly~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny~vri 105 (408)
T KOG0727|consen 26 DKEDLYVRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNYYVRI 105 (408)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCceEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhc
Q 025979 110 LSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIG 189 (245)
Q Consensus 110 ~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g 189 (245)
++.++++.++|+.+|+++++++++.+++|++.+++++.+...++|+++|.|++|+|-++++|++++++|+.|.++|+.+|
T Consensus 106 lstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qig 185 (408)
T KOG0727|consen 106 LSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG 185 (408)
T ss_pred hhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
++||+|||+|||||||||+||||+|+...+.|+++.+|+|++||+||+.++||++|
T Consensus 186 idpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvf 241 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVF 241 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998
No 3
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-40 Score=288.57 Aligned_cols=233 Identities=41% Similarity=0.738 Sum_probs=211.1
Q ss_pred CCCCCCCcccCCCCCCCC-------------chhHHHHHHHHHHHhhhhhhhHHHHHHHHH--HHHHHHHHHHHHhhhhc
Q 025979 13 VSEPPPSTRSDLTEQWSD-------------EDDLYSRLKSLQRQLEFIDIQEEYVKDEQK--NLKRELLRAQEEVKRIQ 77 (245)
Q Consensus 13 ~~e~~~~~~~e~~~~~~~-------------~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~ 77 (245)
.++|+...+..-..++.+ ..+|+-++.++++-..+|..+.++|+++.. ...+...+-+.+.++++
T Consensus 24 ~~~~~v~~r~gr~k~~~kGpdAa~klP~V~p~~~C~lrlLk~~RIkDyLLMEEEFI~NQe~~k~~e~~~ee~r~~vd~lR 103 (440)
T KOG0726|consen 24 KYEPPVPTRVGRKKKKGKGPDAASKLPTVTPHTQCKLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKQEEERSKVDDLR 103 (440)
T ss_pred ccCCCCcchhhhhhhcccCcchhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhHHHhhc
Confidence 377777777665544442 457788899999988899888888887754 22222233457899999
Q ss_pred cccchhhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCce
Q 025979 78 SVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVT 157 (245)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 157 (245)
.+|..++++.+.+|++++++.++.+..|++.++++++.+.+.||++|-+++...++..++..+.++.++.|.....|.-+
T Consensus 104 GtPmsvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Et 183 (440)
T KOG0726|consen 104 GTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQET 183 (440)
T ss_pred CCccccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccc
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEV 237 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~ 237 (245)
|.|++|++.++++|++.+++|+.||++|..+|++||+||+|||+||||||+||+|+|+...++|+|+.+|+++++|.|++
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdG 263 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 025979 238 WLKHKQIF 245 (245)
Q Consensus 238 ~~~vr~iF 245 (245)
.+.||++|
T Consensus 264 pklvRqlF 271 (440)
T KOG0726|consen 264 PKLVRELF 271 (440)
T ss_pred hHHHHHHH
Confidence 99999998
No 4
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=278.51 Aligned_cols=216 Identities=37% Similarity=0.589 Sum_probs=207.9
Q ss_pred CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEE
Q 025979 30 DEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRI 109 (245)
Q Consensus 30 ~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 109 (245)
-.....+++.++|..+....+.+.+++.+.+++.....-++++++.++.+...++++.+.+++++.+++..++.+|++.+
T Consensus 18 ~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegKyvvdv 97 (404)
T KOG0728|consen 18 LRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGKYVVDV 97 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCcEEEec
Confidence 34445578899999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhc
Q 025979 110 LSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIG 189 (245)
Q Consensus 110 ~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g 189 (245)
...++...+.++.+|++..+++.++.++|...|+.++.|...+.|+.+|+-++|+|.++++|++.|++|.+||++|..+|
T Consensus 98 ~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLG 177 (404)
T KOG0728|consen 98 DKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG 177 (404)
T ss_pred cCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
+..|+|+|||||||||||+||+|+|....+.|+|+++|+++++|+||+.++||++|
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelf 233 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELF 233 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998
No 5
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-37 Score=266.22 Aligned_cols=217 Identities=31% Similarity=0.646 Sum_probs=205.8
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhc----------------
Q 025979 29 SDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQ---------------- 92 (245)
Q Consensus 29 ~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------- 92 (245)
+..+.+.++.+-+..|+..++.+..++..+....++.+.+..++|+-.+..|+.++.+.+.++-
T Consensus 20 mste~i~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg~n~~ld 99 (424)
T KOG0652|consen 20 MSTEEIISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSGANIDLD 99 (424)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhhccccCchHHhhHHHHhcCCcccchhccCCccccc
Confidence 3456777888889999999999999999999999999999999999999999999999999972
Q ss_pred -----ccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhh
Q 025979 93 -----NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQ 167 (245)
Q Consensus 93 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~ 167 (245)
..+++++|+...++..+...++.+.++||..|.++.+++-+.+.+|.+.++.+..|...++|.-+|+|++|++.+
T Consensus 100 ~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQ 179 (424)
T KOG0652|consen 100 SQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQ 179 (424)
T ss_pred ccccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHH
Confidence 123778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 168 KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 168 ~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
++++.++|.+|+.|++.|.++|+.||+|+|+|||||||||++|||+|...+.+|+.+.++.++++|+|++++.||+.|
T Consensus 180 IqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAF 257 (424)
T KOG0652|consen 180 IQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAF 257 (424)
T ss_pred HHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
No 6
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9.1e-37 Score=282.96 Aligned_cols=220 Identities=79% Similarity=1.170 Sum_probs=211.1
Q ss_pred CCCCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCee
Q 025979 26 EQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNY 105 (245)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 105 (245)
+-+.....++.++.++++++..++.+...+..+++.+++++.++++++++++.+|..++++.+.+++.+++++++++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (398)
T PTZ00454 12 STTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNY 91 (398)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEE
Confidence 44566677888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHH
Q 025979 106 YVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELY 185 (245)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~ 185 (245)
++.+.+.+++..+++|..|.++.++..+.+++|+..++.+..+...+.|+++|+||+|++.++++|++.+.+|+.+|+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~ 171 (398)
T PTZ00454 92 YVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELY 171 (398)
T ss_pred EEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 186 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 186 ~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
..+|+.+|+|+|||||||||||++|+++|+.++.+|+++.++++.++|+|++++.++++|
T Consensus 172 ~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf 231 (398)
T PTZ00454 172 EQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVF 231 (398)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876
No 7
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=277.16 Aligned_cols=215 Identities=45% Similarity=0.770 Sum_probs=206.8
Q ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHH--HHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEE
Q 025979 31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQK--NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVR 108 (245)
Q Consensus 31 ~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 108 (245)
...|+-++.++++++.+|..+.++++.+.. .+++++..+++++++++.+|..++++.+.++++++++.+++|.+++++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 132 (438)
T PTZ00361 53 NTKCRLRLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVN 132 (438)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEe
Confidence 457888999999999999999999999874 778899999999999999999999999999999999999999999999
Q ss_pred EeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhh
Q 025979 109 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 188 (245)
Q Consensus 109 ~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~ 188 (245)
+.+.++.+.++||..+.++..+..+..++|.+.+..++.|...+.|.++|+||+|++.++++|.+++..|+.+|++|..+
T Consensus 133 ~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~ 212 (438)
T PTZ00361 133 ILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDI 212 (438)
T ss_pred ccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
|+.+|+|+|||||||||||++|+++|++++.+|+++++++++++|+|++++.++++|
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF 269 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELF 269 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876
No 8
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.5e-33 Score=256.60 Aligned_cols=214 Identities=46% Similarity=0.778 Sum_probs=203.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEee
Q 025979 32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILS 111 (245)
Q Consensus 32 ~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 111 (245)
..+..++.++++++..++.+++.+..+.+..+.++.+++++++.++.+|..++.+.+.+++.+.++..++|.++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~ 83 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSP 83 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccc
Confidence 45567778888899999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccC
Q 025979 112 TINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGID 191 (245)
Q Consensus 112 ~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~ 191 (245)
++....+.+|..+.++.....+..++|...+..+..+...+.|+++|+||+|+++++++|.+++..|+.+++.|..+|+.
T Consensus 84 ~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~ 163 (389)
T PRK03992 84 FIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE 163 (389)
T ss_pred cCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC
Confidence 99999999999999999999999999988888888888899999999999999999999999999999999999999999
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
+|+|+|||||||||||++|+++|+.++.+|+.++++++.++|+|++++.++.+|
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f 217 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELF 217 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876
No 9
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=6.1e-33 Score=254.97 Aligned_cols=206 Identities=48% Similarity=0.817 Sum_probs=196.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeecccccccC
Q 025979 40 SLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLK 119 (245)
Q Consensus 40 ~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (245)
+++.++..|+++++.++.+.+..++++.++++++++++.+|..++++.+.+++++.+++++++.++++++.+|++...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLK 82 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCC
Confidence 45567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeee
Q 025979 120 PSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 199 (245)
Q Consensus 120 ~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~ 199 (245)
+|..+.++.....+..++|...++.+..+...+.|+++|+||+|+++++++|.+++..|+.+++.|..+|+.+|+|+|||
T Consensus 83 ~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~ 162 (364)
T TIGR01242 83 PGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLY 162 (364)
T ss_pred CCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEE
Confidence 99999999999999999998888888888889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 200 GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 200 GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
||||||||++|+++|+.++.+|+++.++++..+|+|++++.++.+|
T Consensus 163 GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f 208 (364)
T TIGR01242 163 GPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIF 208 (364)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888765
No 10
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.3e-33 Score=242.53 Aligned_cols=168 Identities=42% Similarity=0.752 Sum_probs=147.6
Q ss_pred cccchhhhhhhhhhcc----cceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCC
Q 025979 78 SVPLVIGQFMEMVDQN----NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 153 (245)
Q Consensus 78 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 153 (245)
..|..++...+.++.+ +.++....-.+|++.+.+.+....+..|.+|.++++.+.+.-.+|+..++++..|..+++
T Consensus 92 eqplqvarctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veek 171 (435)
T KOG0729|consen 92 EQPLQVARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEK 171 (435)
T ss_pred cCCceeheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecC
Confidence 3456666666655443 223333333445555566777788899999999999999999999999999999999999
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~ 233 (245)
|+++|+|++|+.++++.+++.|+.|+.||+.|-++|++||+|||+|||||||||++|+|+|+..++.|++|-+|++++||
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky 251 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccC
Q 025979 234 LGEVWLKHKQIF 245 (245)
Q Consensus 234 ~Ge~~~~vr~iF 245 (245)
+||++++||++|
T Consensus 252 vgegarmvrelf 263 (435)
T KOG0729|consen 252 VGEGARMVRELF 263 (435)
T ss_pred hhhhHHHHHHHH
Confidence 999999999998
No 11
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-30 Score=228.62 Aligned_cols=196 Identities=33% Similarity=0.616 Sum_probs=179.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeec
Q 025979 49 DIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHR 128 (245)
Q Consensus 49 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~ 128 (245)
...++..+.....+.+........++.++.....++++.+.++..+.+|+.+.|..|++.+...++...+..|+++.++.
T Consensus 23 ~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldi 102 (388)
T KOG0651|consen 23 SSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDI 102 (388)
T ss_pred hhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCceeeeee
Confidence 34444444444555555556667788888899999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHH
Q 025979 129 HSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTM 208 (245)
Q Consensus 129 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~ 208 (245)
+...+...+|.+.+ .+..|......+++|+.++|+-.+..++++.|+.|+.+|++|.++|+++|+|++||||||||||+
T Consensus 103 ttltIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTl 181 (388)
T KOG0651|consen 103 TTLTIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTL 181 (388)
T ss_pred eeeehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhH
Confidence 99999999999999 77888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 209 LAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 209 lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
+|+++|..+++.|+.++.++++++|+||+++.||+.|
T Consensus 182 la~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf 218 (388)
T KOG0651|consen 182 LARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMF 218 (388)
T ss_pred HHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 12
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=2.6e-27 Score=224.78 Aligned_cols=204 Identities=35% Similarity=0.622 Sum_probs=169.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhh-hhcccceeecccCCeeEEEEeeccccc
Q 025979 38 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM-VDQNNGIVGSTTGSNYYVRILSTINRE 116 (245)
Q Consensus 38 ~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (245)
+.++++++..|..++..|.+.++..+.++..++++++++..||...+++.+. .+...+.+ ...|..+.+.+.+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~~ 81 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEV-FTAGRRMRVTVSPNVNAA 81 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEE-EeCCceEEEEeCCCCCHH
Confidence 4567788888899999999999999999999999999999999999999987 55545555 667888888888888888
Q ss_pred ccCCCceeeeec-------------------------------------------------------------ccccccc
Q 025979 117 LLKPSASVALHR-------------------------------------------------------------HSNALVD 135 (245)
Q Consensus 117 ~l~~~~~v~~~~-------------------------------------------------------------~~~~~~~ 135 (245)
.+.+|..|.++. .......
T Consensus 82 ~l~~g~~v~l~e~~~~v~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (512)
T TIGR03689 82 ELVPGQTVRLNEALQVVEARDFETVGEIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFE 161 (512)
T ss_pred HCCCCCEEEECCcceeeccCCCCCCCceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhh
Confidence 888888777660 0000011
Q ss_pred ccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHh
Q 025979 136 VLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 136 il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
.+|+ ..+..+...+.|+++|+||+|++.++++|++.|..|+.++++|..+|+.+|+|+|||||||||||++|+++|+
T Consensus 162 ~~~~---~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 162 AVPK---AEVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred cCCH---hHHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH
Confidence 1110 1123344567789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc----------eeeeechhHHHHHHhccccccccccC
Q 025979 216 HTTA----------AFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 216 ~l~~----------~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
+++. .|+.+++++++++|+|+++++++.+|
T Consensus 239 eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF 278 (512)
T TIGR03689 239 SLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIF 278 (512)
T ss_pred hhccccccccCCceeEEeccchhhcccccchHHHHHHHHH
Confidence 9854 48889999999999999999999876
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-27 Score=224.98 Aligned_cols=95 Identities=48% Similarity=0.824 Sum_probs=93.5
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.|+++|+||||+++++.++..+|.+|+++|+.|+++|++.|.|||||||||||||+||||+|++.+.+|+.|.|++|+
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
+||+||+|+.||.+|
T Consensus 583 NkYVGESErAVR~vF 597 (802)
T KOG0733|consen 583 NKYVGESERAVRQVF 597 (802)
T ss_pred HHHhhhHHHHHHHHH
Confidence 999999999999998
No 14
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.3e-27 Score=224.52 Aligned_cols=95 Identities=49% Similarity=0.903 Sum_probs=93.4
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.|+++|+||||++++|.++.+.|.+|++||+.|.++|++||+|||||||||||||++|||+|++++.+|+.|++++++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
+||+||+|++||++|
T Consensus 506 sk~vGeSEr~ir~iF 520 (693)
T KOG0730|consen 506 SKYVGESERAIREVF 520 (693)
T ss_pred HHhcCchHHHHHHHH
Confidence 999999999999998
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.1e-26 Score=217.58 Aligned_cols=96 Identities=42% Similarity=0.806 Sum_probs=91.6
Q ss_pred ccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 149 ~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
...+.|+|+|+||||++++|.+|.+.|..|+.||++|. .|+.+..|||||||||||||++|||+|.++...|+.|.|+|
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE 740 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 740 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH
Confidence 34578999999999999999999999999999999986 48888899999999999999999999999999999999999
Q ss_pred HHHHHhccccccccccC
Q 025979 229 FVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 229 l~~~~~Ge~~~~vr~iF 245 (245)
+++||+||+|.|||++|
T Consensus 741 LLNMYVGqSE~NVR~VF 757 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVF 757 (953)
T ss_pred HHHHHhcchHHHHHHHH
Confidence 99999999999999998
No 16
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.4e-23 Score=183.26 Aligned_cols=95 Identities=43% Similarity=0.744 Sum_probs=90.0
Q ss_pred cCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 150 ~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
..++|++.|+||.|++.+++.|+|+|.+|++.|.+|.. +-.|.+|+||||||||||+.||+|+|.+.+.+|+.|+.|++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 46899999999999999999999999999999999874 34578999999999999999999999999999999999999
Q ss_pred HHHHhccccccccccC
Q 025979 230 VQKYLGEVWLKHKQIF 245 (245)
Q Consensus 230 ~~~~~Ge~~~~vr~iF 245 (245)
+++|.||+++.|+++|
T Consensus 203 vSKWmGESEkLVknLF 218 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLF 218 (439)
T ss_pred HHHHhccHHHHHHHHH
Confidence 9999999999999988
No 17
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.8e-23 Score=194.14 Aligned_cols=92 Identities=39% Similarity=0.704 Sum_probs=89.5
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
.+.++|.|+||++....++++.+.. +.||+.|..+|+.||+|||||||||||||+||+|+|++++.||+.|+++++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3468999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccC
Q 025979 233 YLGEVWLKHKQIF 245 (245)
Q Consensus 233 ~~Ge~~~~vr~iF 245 (245)
+.||+|++||++|
T Consensus 263 vSGESEkkiRelF 275 (802)
T KOG0733|consen 263 VSGESEKKIRELF 275 (802)
T ss_pred cCcccHHHHHHHH
Confidence 9999999999998
No 18
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-22 Score=196.09 Aligned_cols=94 Identities=41% Similarity=0.742 Sum_probs=90.8
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...++++|.||.|+++++++|.|+|.+ +++|+.|.++|...|+|+||+||||||||+||||+|.+.++||+.+++|+|+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 445669999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|.++..||++|
T Consensus 382 E~~~g~~asrvr~lf 396 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLF 396 (774)
T ss_pred HHhcccchHHHHHHH
Confidence 999999999999998
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-22 Score=182.97 Aligned_cols=94 Identities=40% Similarity=0.658 Sum_probs=88.9
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...|.+.|+||.|+.++|+-|.|+|.+|+..|++|..+ ..|.+|||++||||||||+||||+|.+|+.+||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 45688999999999999999999999999999999854 47889999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
+||-||+|+.||=+|
T Consensus 283 SKwRGeSEKlvRlLF 297 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLF 297 (491)
T ss_pred hhhccchHHHHHHHH
Confidence 999999999999877
No 20
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.2e-22 Score=186.07 Aligned_cols=93 Identities=41% Similarity=0.697 Sum_probs=89.8
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
...+++|+||.|+|++++++.|.|++ +++|..|.++|-+-|+||||.||||||||+||||+|.+.++|||..++|+|=+
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34468999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccC
Q 025979 232 KYLGEVWLKHKQIF 245 (245)
Q Consensus 232 ~~~Ge~~~~vr~iF 245 (245)
+|+|.+++.||++|
T Consensus 376 m~VGvGArRVRdLF 389 (752)
T KOG0734|consen 376 MFVGVGARRVRDLF 389 (752)
T ss_pred hhhcccHHHHHHHH
Confidence 99999999999998
No 21
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.8e-22 Score=189.64 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEE
Q 025979 32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNL---KRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVR 108 (245)
Q Consensus 32 ~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 108 (245)
.++++++.+.|||+ +|++|++.|++|++.. ..++..++++++....+..+...+..++++...+.+.|++++++++
T Consensus 216 ~kVk~~meK~QREy-yL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRn 294 (782)
T COG0466 216 KKVKEQMEKSQREY-YLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRN 294 (782)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 35677888999999 9999999999999843 4678899999999999999999999999999999999999999999
Q ss_pred EeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhh
Q 025979 109 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 188 (245)
Q Consensus 109 ~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~ 188 (245)
|++|+ ..++|+...... ....+..++.-.||+|++++|++|.|++..-...
T Consensus 295 YlDwl--l~lPW~~~sk~~--------------------~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~------- 345 (782)
T COG0466 295 YLDWL--LDLPWGKRSKDK--------------------LDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT------- 345 (782)
T ss_pred HHHHH--HhCCCccccchh--------------------hhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh-------
Confidence 99998 456666543322 2233334455579999999999999999862111
Q ss_pred ccCCCcc--eeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 189 GIDPPRG--VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 189 g~~~~~g--vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
+.-+| +||+||||||||+|+++||+.+++.|+|++..-
T Consensus 346 --~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 346 --KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred --ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 12234 999999999999999999999999999998543
No 22
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.1e-21 Score=185.05 Aligned_cols=95 Identities=52% Similarity=0.910 Sum_probs=92.3
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...+.++|+|++|++..++.+.+.+..|+.+++.|...|+.+++|+|||||||||||++|+|+|++++.+|+.+++++++
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+||++++||++|
T Consensus 314 sk~vGesek~ir~~F 328 (494)
T COG0464 314 SKWVGESEKNIRELF 328 (494)
T ss_pred ccccchHHHHHHHHH
Confidence 999999999999988
No 23
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.6e-21 Score=175.81 Aligned_cols=93 Identities=46% Similarity=0.780 Sum_probs=88.0
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhc-cCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g-~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
.-.++|+|++|++.+++.+++.|.+|+.+|++|...+ +.+++|+|||||||||||++|+|+|.+.++.|+.|+++.+++
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3468899999999999999999999999999998655 579999999999999999999999999999999999999999
Q ss_pred HHhccccccccccC
Q 025979 232 KYLGEVWLKHKQIF 245 (245)
Q Consensus 232 ~~~Ge~~~~vr~iF 245 (245)
||.||+++.++.+|
T Consensus 166 KWfgE~eKlv~AvF 179 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVF 179 (386)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999988
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-20 Score=179.94 Aligned_cols=96 Identities=33% Similarity=0.633 Sum_probs=92.2
Q ss_pred cCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 150 ~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
......+.|+|++|+.++++.+.+.|++|.+.|.+|...++..+.|+|||||||||||+||.|+|..++..|+.|.|+++
T Consensus 658 ~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPEl 737 (952)
T KOG0735|consen 658 LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPEL 737 (952)
T ss_pred ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHH
Confidence 34455699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccccC
Q 025979 230 VQKYLGEVWLKHKQIF 245 (245)
Q Consensus 230 ~~~~~Ge~~~~vr~iF 245 (245)
++||+|.+|.+||++|
T Consensus 738 L~KyIGaSEq~vR~lF 753 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLF 753 (952)
T ss_pred HHHHhcccHHHHHHHH
Confidence 9999999999999998
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=6.6e-20 Score=182.33 Aligned_cols=94 Identities=55% Similarity=0.957 Sum_probs=91.4
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
+.|.++|+|++|++.+++.|.+.+.+|+.+++.|.++|+.+|+|+|||||||||||++|+++|++++.+|+.++++++++
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccC
Q 025979 232 KYLGEVWLKHKQIF 245 (245)
Q Consensus 232 ~~~Ge~~~~vr~iF 245 (245)
+|+|+++++||++|
T Consensus 526 ~~vGese~~i~~~f 539 (733)
T TIGR01243 526 KWVGESEKAIREIF 539 (733)
T ss_pred cccCcHHHHHHHHH
Confidence 99999999999987
No 26
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.8e-19 Score=173.04 Aligned_cols=164 Identities=21% Similarity=0.192 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHH---HH-HHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEe
Q 025979 35 YSRLKSLQRQLEFIDIQEEYVKDEQKNL---KR-ELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRIL 110 (245)
Q Consensus 35 ~~~~~~~~~e~~~l~~~~~~i~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 110 (245)
..++.+-+++| .|++|++.|+.++... +. ....++++++.+..|..+...+.+++.+.+.+.+++++.++.++|+
T Consensus 306 E~k~~~~~r~y-lL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYL 384 (906)
T KOG2004|consen 306 EEKIKQDHREY-LLREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYL 384 (906)
T ss_pred HhhhhHHHHHH-HHHHHHHHHHHhhCCCccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHH
Confidence 34455666677 7888888888888722 22 3556899999998999999999999999999999999999999999
Q ss_pred ecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhcc
Q 025979 111 STINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGI 190 (245)
Q Consensus 111 ~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~ 190 (245)
+|+ ..++||..... .+.......+.-+|++|++++|++|.|+|..-... |-
T Consensus 385 dwl--t~LPWgk~S~E--------------------n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr-------gs 435 (906)
T KOG2004|consen 385 DWL--TSLPWGKSSTE--------------------NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR-------GS 435 (906)
T ss_pred HHH--HhCCCCCCChh--------------------hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc-------cc
Confidence 999 56667655332 22233334455589999999999999999862111 22
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
..++-+||+||||+|||++||+||..+|+.|+|++..-
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence 23445999999999999999999999999999998543
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-19 Score=173.87 Aligned_cols=94 Identities=40% Similarity=0.750 Sum_probs=90.7
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.....++|.|+.|.+++++++.|.|.+ +++|..|..+|...|+|+||+||||||||+||||+|.+.+.||+.+++|+++
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV 220 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 220 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence 346779999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|-+++.||++|
T Consensus 221 emfVGvGAsRVRdLF 235 (596)
T COG0465 221 EMFVGVGASRVRDLF 235 (596)
T ss_pred hhhcCCCcHHHHHHH
Confidence 999999999999988
No 28
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.8e-19 Score=175.51 Aligned_cols=173 Identities=24% Similarity=0.366 Sum_probs=128.4
Q ss_pred cccCCCCC---CCCCCCcccCCCCCCCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccch
Q 025979 6 MVLDPKPV---SEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLV 82 (245)
Q Consensus 6 ~~~~~k~~---~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (245)
-.|||||| |||+|+.+++.. .|.+.+.+.+++.+++.+...+..+.. +..+....++..+++ ..
T Consensus 376 R~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~---~~~k~~~~~~~~~~~---------~~ 442 (786)
T COG0542 376 RFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQD---EKEKKLIDEIIKLKE---------GR 442 (786)
T ss_pred CCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhh---------hh
Confidence 46999999 999999999999 999999999999999998887776654 111111112222221 00
Q ss_pred hhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCC------c
Q 025979 83 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD------V 156 (245)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~------~ 156 (245)
.......+.. . .+...+.+++..|++.++..+...+..+ .
T Consensus 443 ~~~~~~~~~~-~---------------------------------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~ 488 (786)
T COG0542 443 IPELEKELEA-E---------------------------------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERR 488 (786)
T ss_pred hhhHHHHHhh-c---------------------------------cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHH
Confidence 0111111111 0 3455677888999999998876665544 3
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcc----eeeecCCCCchHHHHHHHHhccc---ceeeeechhHH
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG----VLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEF 229 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~g----vLl~GPPGtGKT~lAkalA~~l~---~~~~~v~~s~l 229 (245)
....|+|+++++..+.++|.. .+.|+..|+. |||.||+|||||.|||+||..+. ..+++++||+|
T Consensus 489 L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy 560 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEY 560 (786)
T ss_pred HhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHH
Confidence 345699999999999999987 7788866544 99999999999999999999995 89999999999
Q ss_pred HHHH
Q 025979 230 VQKY 233 (245)
Q Consensus 230 ~~~~ 233 (245)
+++|
T Consensus 561 ~EkH 564 (786)
T COG0542 561 MEKH 564 (786)
T ss_pred HHHH
Confidence 8776
No 29
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.75 E-value=4.7e-19 Score=153.80 Aligned_cols=91 Identities=33% Similarity=0.575 Sum_probs=81.8
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...++++++||+|+++++..-+-.+.. +.+|+.|.+| .|++||||||||||||++|||+|++++.||+.+...+++
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 346789999999999999887766655 8899877665 689999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
..|+|++++.|+++|
T Consensus 189 GehVGdgar~Ihely 203 (368)
T COG1223 189 GEHVGDGARRIHELY 203 (368)
T ss_pred HHHhhhHHHHHHHHH
Confidence 999999999999875
No 30
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=6.5e-19 Score=176.13 Aligned_cols=181 Identities=19% Similarity=0.182 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEE
Q 025979 32 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKN---LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVR 108 (245)
Q Consensus 32 ~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 108 (245)
.++++++.+.|+++ +|++|++.|++|+++ ...++.+++++++....++.....+.+++++.+.+.+.+++.+++++
T Consensus 213 ~~v~~~~~~~qr~~-~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 291 (775)
T TIGR00763 213 KKVEEKMEKTQREY-YLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRN 291 (775)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 46677888899999 999999999999974 45678899999999999999999999999999999999999999888
Q ss_pred EeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhh
Q 025979 109 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 188 (245)
Q Consensus 109 ~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~ 188 (245)
|++++ ..++|+...... ..........-++++|+++++++|.+++..+...
T Consensus 292 yl~~~--~~ip~~~~~~~~--------------------~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~------- 342 (775)
T TIGR00763 292 YLDWL--TDLPWGKYSKEN--------------------LDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR------- 342 (775)
T ss_pred HHHHH--HCCCCcccccch--------------------hhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh-------
Confidence 98887 334444321110 0011112223467999999999999988753211
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH---------HHHhcccccccc
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV---------QKYLGEVWLKHK 242 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~---------~~~~Ge~~~~vr 242 (245)
+-..+..+|||||||||||++|+++|+.++.+|++++++.+. ..|+|.....+.
T Consensus 343 ~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~ 405 (775)
T TIGR00763 343 GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRII 405 (775)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHH
Confidence 111233699999999999999999999999999999765432 356666655544
No 31
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.4e-18 Score=160.86 Aligned_cols=94 Identities=43% Similarity=0.734 Sum_probs=88.0
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...+++.|+|+.|++.+++.+.+++.+|+..+++|..+. .+++|+||+||||||||+|++|||.++++.|+.+++|++.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 345679999999999999999999999999999997654 5778999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|+++++||.+|
T Consensus 224 sK~~Ge~eK~vralf 238 (428)
T KOG0740|consen 224 SKYVGESEKLVRALF 238 (428)
T ss_pred hhccChHHHHHHHHH
Confidence 999999999999988
No 32
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.72 E-value=4.3e-18 Score=162.50 Aligned_cols=94 Identities=43% Similarity=0.776 Sum_probs=89.6
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.+.++|+|++|++++++++.+.+.. +.+++.|...|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 457889999999999999999999887 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|++++.++++|
T Consensus 126 ~~~~g~~~~~l~~~f 140 (495)
T TIGR01241 126 EMFVGVGASRVRDLF 140 (495)
T ss_pred HHHhcccHHHHHHHH
Confidence 999999999999876
No 33
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.71 E-value=5.2e-18 Score=161.18 Aligned_cols=90 Identities=29% Similarity=0.430 Sum_probs=80.8
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
.++++|+||+|++.+|+.+.+.... .+....++|+.+|+|+|||||||||||++|+++|++++.+|++++++.++++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 4678899999999999999876543 2334567899999999999999999999999999999999999999999999
Q ss_pred HhccccccccccC
Q 025979 233 YLGEVWLKHKQIF 245 (245)
Q Consensus 233 ~~Ge~~~~vr~iF 245 (245)
|+|+++++++++|
T Consensus 299 ~vGese~~l~~~f 311 (489)
T CHL00195 299 IVGESESRMRQMI 311 (489)
T ss_pred ccChHHHHHHHHH
Confidence 9999999999886
No 34
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.69 E-value=6e-18 Score=168.78 Aligned_cols=169 Identities=14% Similarity=0.159 Sum_probs=134.6
Q ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHH---HHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEE
Q 025979 31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKN---LKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYV 107 (245)
Q Consensus 31 ~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 107 (245)
..++++++.+.|+++ +|++|++.|+++++. ...++.+++++++....++.....+.+++++...+.+.+++.++.+
T Consensus 214 ~~~v~~~~~k~q~e~-~lreq~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~ 292 (784)
T PRK10787 214 RNRVKKQMEKSQREY-YLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVR 292 (784)
T ss_pred HHHHHHHHhhhhhhh-cchhhhhhhcccccCCCcchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 346778889999999 999999999999974 3467888999999999999999999999999999999999999999
Q ss_pred EEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhh
Q 025979 108 RILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQ 187 (245)
Q Consensus 108 ~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~ 187 (245)
+|++|+ ..++|+....... ...+...+.-.+++|++.+|++|.+++.....
T Consensus 293 ~yl~~~--~~~pw~~~~~~~~--------------------~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~------- 343 (784)
T PRK10787 293 GYIDWM--VQVPWNARSKVKK--------------------DLRQAQEILDTDHYGLERVKDRILEYLAVQSR------- 343 (784)
T ss_pred HHHHHH--HhCCCCCCCcccc--------------------cHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-------
Confidence 999998 4567765422111 11222334446899999999999998875211
Q ss_pred hccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 188 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 188 ~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
.+-..+..+||+||||||||++++++|..++.+|++++.+..
T Consensus 344 ~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~ 385 (784)
T PRK10787 344 VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGV 385 (784)
T ss_pred cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 111123459999999999999999999999999999976543
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=1.5e-17 Score=165.46 Aligned_cols=93 Identities=58% Similarity=1.003 Sum_probs=89.9
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
.++++|+||+|++.+++.|++++..|+.+|++|..+|+.+++|+|||||||||||++|+++|++++.+|+.+++++++++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccC
Q 025979 233 YLGEVWLKHKQIF 245 (245)
Q Consensus 233 ~~Ge~~~~vr~iF 245 (245)
|.|+++.+++.+|
T Consensus 252 ~~g~~~~~l~~lf 264 (733)
T TIGR01243 252 YYGESEERLREIF 264 (733)
T ss_pred cccHHHHHHHHHH
Confidence 9999999998876
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-16 Score=149.62 Aligned_cols=93 Identities=38% Similarity=0.667 Sum_probs=81.3
Q ss_pred CCCceecc--CCcchhhhHHH-HHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccce-eeeechhH
Q 025979 153 KPDVTYND--IGGCDIQKQEI-REAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA-FIRVVGSE 228 (245)
Q Consensus 153 ~~~~~~~d--v~Gl~~~~~~i-~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~-~~~v~~s~ 228 (245)
.|+..|++ |||++.....| +++.....-.|+..+++|++.-+|+|||||||||||++||.|...+++. =--|++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46667776 79999887666 7777777889999999999999999999999999999999999999653 22378999
Q ss_pred HHHHHhccccccccccC
Q 025979 229 FVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 229 l~~~~~Ge~~~~vr~iF 245 (245)
+++||+||+|.|||++|
T Consensus 293 IL~KYVGeSE~NvR~LF 309 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLF 309 (744)
T ss_pred HHHHhhcccHHHHHHHH
Confidence 99999999999999998
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.2e-16 Score=152.83 Aligned_cols=91 Identities=53% Similarity=0.879 Sum_probs=88.2
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~ 233 (245)
+.+. .+++|+..+...+++.++.|+.++..|..+|+++|+|+|+|||||||||.+++++|++.++.++.+++++++++|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccC
Q 025979 234 LGEVWLKHKQIF 245 (245)
Q Consensus 234 ~Ge~~~~vr~iF 245 (245)
.||+++++|++|
T Consensus 259 ~gEte~~LR~~f 270 (693)
T KOG0730|consen 259 PGETESNLRKAF 270 (693)
T ss_pred ccchHHHHHHHH
Confidence 999999999987
No 38
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.64 E-value=7.1e-17 Score=147.15 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=70.2
Q ss_pred ceeccC-CcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHh
Q 025979 156 VTYNDI-GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 156 ~~~~dv-~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~ 234 (245)
.+|+++ +|+--...-+..++...- .......|+++|++++||||||||||++|+++|++++++|+.++++++.++|+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 345565 666555555544443211 12233468899999999999999999999999999999999999999999999
Q ss_pred ccccccccccC
Q 025979 235 GEVWLKHKQIF 245 (245)
Q Consensus 235 Ge~~~~vr~iF 245 (245)
||++++||++|
T Consensus 190 GEsEk~IR~~F 200 (413)
T PLN00020 190 GEPGKLIRQRY 200 (413)
T ss_pred CcHHHHHHHHH
Confidence 99999999987
No 39
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.7e-17 Score=161.84 Aligned_cols=92 Identities=36% Similarity=0.697 Sum_probs=87.9
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-----cceeeeechhH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSE 228 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~ 228 (245)
..+.|++|||++.++..++|+|-.|+..|+.|..+++.||+|+|||||||||||+.|+++|..+ +..|+.-++.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 4589999999999999999999999999999999999999999999999999999999999988 67788899999
Q ss_pred HHHHHhccccccccccC
Q 025979 229 FVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 229 l~~~~~Ge~~~~vr~iF 245 (245)
..++|+||.++.+|-+|
T Consensus 340 ~lskwvgEaERqlrllF 356 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLF 356 (1080)
T ss_pred hhccccCcHHHHHHHHH
Confidence 99999999999999887
No 40
>CHL00176 ftsH cell division protein; Validated
Probab=99.63 E-value=1.9e-16 Score=154.83 Aligned_cols=94 Identities=39% Similarity=0.728 Sum_probs=87.8
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...+.++|+|++|++++++++.+.+.. +.+++.|..+|...|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 345678999999999999999999877 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
+.|+|.+...++++|
T Consensus 254 ~~~~g~~~~~vr~lF 268 (638)
T CHL00176 254 EMFVGVGAARVRDLF 268 (638)
T ss_pred HHhhhhhHHHHHHHH
Confidence 999999998888776
No 41
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=8.6e-16 Score=154.75 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=129.5
Q ss_pred cccCCCCC---CCCCCCcccCCCCCCCCchhHHHHHHHHHHHhhhhhhh----------HHHHHHHHHHHHHHHHHHHHH
Q 025979 6 MVLDPKPV---SEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQ----------EEYVKDEQKNLKRELLRAQEE 72 (245)
Q Consensus 6 ~~~~~k~~---~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~l~~~----------~~~i~~~~~~~~~~~~~~~~~ 72 (245)
..|||||| |||+|..+++..+.+...+.+.+++.+++.+...+..+ ...++.++..+++++..++++
T Consensus 393 r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (852)
T TIGR03345 393 RQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEAR 472 (852)
T ss_pred ccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999 99999999999999999998988888887777665332 112333333444444444444
Q ss_pred hhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeeccccc--cc-CCCceeeeeccccccccccCCCccccccccc
Q 025979 73 VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRE--LL-KPSASVALHRHSNALVDVLPPEADSSISLLS 149 (245)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l-~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~ 149 (245)
++.-+.............+.. ..............+..+... .+ .....+........+..++..|++.++..+.
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~ 550 (852)
T TIGR03345 473 WQQEKELVEAILALRAELEAD--ADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMV 550 (852)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--ccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhc
Confidence 433221100000000000000 000000000000000000000 00 0011122234556778899999999998776
Q ss_pred cCCCCC------ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccC---CCcc-eeeecCCCCchHHHHHHHHhcc--
Q 025979 150 QSEKPD------VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGID---PPRG-VLLYGPPGTGKTMLAKAVANHT-- 217 (245)
Q Consensus 150 ~~~~~~------~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~---~~~g-vLl~GPPGtGKT~lAkalA~~l-- 217 (245)
..+... ..-..|+|++.+++.+.+.+.. .+.|+. .|.| +||+||||||||.+|+++|..+
T Consensus 551 ~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~--------~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 551 RDEIEAVLSLPDRLAERVIGQDHALEAIAERIRT--------ARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred hhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 554432 3446799999999999999875 334443 3444 8999999999999999999998
Q ss_pred -cceeeeechhHHHHH
Q 025979 218 -TAAFIRVVGSEFVQK 232 (245)
Q Consensus 218 -~~~~~~v~~s~l~~~ 232 (245)
...|+++++++|.++
T Consensus 623 ~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 623 GEQNLITINMSEFQEA 638 (852)
T ss_pred CCcceEEEeHHHhhhh
Confidence 568999999999765
No 42
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.53 E-value=2.3e-15 Score=151.85 Aligned_cols=220 Identities=20% Similarity=0.247 Sum_probs=128.1
Q ss_pred ccccCCCCC---CCCCCCcccCCCCCCCCchhHHHHHHHHHHHhhhhhhhH--------HHHHHHHHHHHHHHHHHHHHh
Q 025979 5 AMVLDPKPV---SEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQE--------EYVKDEQKNLKRELLRAQEEV 73 (245)
Q Consensus 5 ~~~~~~k~~---~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~l~~~~--------~~i~~~~~~~~~~~~~~~~~~ 73 (245)
...|||||+ |++++..+++..++|...+.+..++..++.++..++.+. ..+++++...++++..+++++
T Consensus 383 ~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~ 462 (857)
T PRK10865 383 DRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEW 462 (857)
T ss_pred CCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999 999999999999998888888777777777766654332 222333333344444344444
Q ss_pred hhhccccchhhhhhhhhhcccc-eeecccC------CeeEEEEeecccc-------cccCCCceeeeeccccccccccCC
Q 025979 74 KRIQSVPLVIGQFMEMVDQNNG-IVGSTTG------SNYYVRILSTINR-------ELLKPSASVALHRHSNALVDVLPP 139 (245)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~------~~~~~~~~~~~~~-------~~l~~~~~v~~~~~~~~~~~il~~ 139 (245)
+..+..-.......+.++.... +...... ...-...+..+.. ..-.....+........+..++..
T Consensus 463 k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~ 542 (857)
T PRK10865 463 KAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLAR 542 (857)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHH
Confidence 4332110000011111110000 0000000 0000000000000 000011122223455667889999
Q ss_pred CccccccccccCCCCC------ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCc----ceeeecCCCCchHHH
Q 025979 140 EADSSISLLSQSEKPD------VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR----GVLLYGPPGTGKTML 209 (245)
Q Consensus 140 ~~~~~~~~~~~~~~~~------~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~----gvLl~GPPGtGKT~l 209 (245)
|++.++..+...+..+ .....+.|++.+++.|.+.|.. .+.|+..|+ .+||+||||||||++
T Consensus 543 ~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~Lf~Gp~G~GKT~l 614 (857)
T PRK10865 543 WTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRR--------SRAGLSDPNRPIGSFLFLGPTGVGKTEL 614 (857)
T ss_pred HHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHH--------HHhcccCCCCCCceEEEECCCCCCHHHH
Confidence 9999998776554332 3456789999999999999876 344544332 489999999999999
Q ss_pred HHHHHhcc---cceeeeechhHHHHH
Q 025979 210 AKAVANHT---TAAFIRVVGSEFVQK 232 (245)
Q Consensus 210 AkalA~~l---~~~~~~v~~s~l~~~ 232 (245)
|++||..+ +.+|++++++++.+.
T Consensus 615 A~aLa~~l~~~~~~~i~id~se~~~~ 640 (857)
T PRK10865 615 CKALANFMFDSDDAMVRIDMSEFMEK 640 (857)
T ss_pred HHHHHHHhhcCCCcEEEEEhHHhhhh
Confidence 99999987 567999999998653
No 43
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=9.1e-15 Score=147.74 Aligned_cols=96 Identities=25% Similarity=0.401 Sum_probs=73.7
Q ss_pred ccccccccccCCCccccccccccCCCCC------ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCC----Cccee
Q 025979 128 RHSNALVDVLPPEADSSISLLSQSEKPD------VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP----PRGVL 197 (245)
Q Consensus 128 ~~~~~~~~il~~~~~~~~~~~~~~~~~~------~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~----~~gvL 197 (245)
.....+..++..|++.++..+...+... .....|.|++.+++.+.+.+.. .+.|+.. ...+|
T Consensus 528 v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~--------~~~gl~~~~~p~~~~L 599 (852)
T TIGR03346 528 VTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRR--------SRAGLSDPNRPIGSFL 599 (852)
T ss_pred cCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHH--------HhccCCCCCCCCeEEE
Confidence 4456677788889888887765443332 2456799999999999999876 3344432 23499
Q ss_pred eecCCCCchHHHHHHHHhcc---cceeeeechhHHHH
Q 025979 198 LYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 231 (245)
Q Consensus 198 l~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~ 231 (245)
|+||||||||++|+++|..+ +.+|++++++++++
T Consensus 600 f~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 600 FLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 99999999999999999987 56899999998754
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.46 E-value=5.2e-14 Score=125.84 Aligned_cols=86 Identities=30% Similarity=0.487 Sum_probs=73.1
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCc-c--eeeecCCCCchHHHHHHHHhcc-------cceeeeechh
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR-G--VLLYGPPGTGKTMLAKAVANHT-------TAAFIRVVGS 227 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~-g--vLl~GPPGtGKT~lAkalA~~l-------~~~~~~v~~s 227 (245)
+++++|++.+|++|.+.+.+ +..+..+.+.|+.+++ | +||+||||||||++|+++|..+ ..+|+.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45899999999999999987 5566777888987653 4 8999999999999999999876 2369999999
Q ss_pred HHHHHHhcccccccccc
Q 025979 228 EFVQKYLGEVWLKHKQI 244 (245)
Q Consensus 228 ~l~~~~~Ge~~~~vr~i 244 (245)
+++++|+|+++..++.+
T Consensus 101 ~l~~~~~g~~~~~~~~~ 117 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEV 117 (287)
T ss_pred HHHHHHhccchHHHHHH
Confidence 99999999998776654
No 45
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.45 E-value=6e-14 Score=141.36 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=114.1
Q ss_pred cccCCCCC---CCCCCCcccCCCCCCCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccch
Q 025979 6 MVLDPKPV---SEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLV 82 (245)
Q Consensus 6 ~~~~~k~~---~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (245)
-.|||||| |+++|..++.....|.....+..++.+++.+...+..+... .....++.+...+++++..+..
T Consensus 384 r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 457 (821)
T CHL00095 384 RFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDF--ETAKQLRDREMEVRAQIAAIIQ---- 457 (821)
T ss_pred ccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHHHHHHHHHH----
Confidence 45899999 99999999988888887778888888777666554322111 0011111111122222221110
Q ss_pred hhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCC------c
Q 025979 83 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPD------V 156 (245)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~------~ 156 (245)
....... . ...........+..++..|++.++..+...+... .
T Consensus 458 ------~~~~~~~------~-------------------~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~ 506 (821)
T CHL00095 458 ------SKKTEEE------K-------------------RLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEET 506 (821)
T ss_pred ------HHHhhhc------c-------------------cccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHH
Confidence 0000000 0 0000123455677788889988888776544332 2
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCC---Cc-ceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP---PR-GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~---~~-gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
.-..|+|++.+++.|..++.. .+.|+.. |. .+||+||||||||++|+++|..+ +.++++++++++
T Consensus 507 L~~~v~GQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~ 578 (821)
T CHL00095 507 LHKRIIGQDEAVVAVSKAIRR--------ARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY 578 (821)
T ss_pred hcCcCcChHHHHHHHHHHHHH--------HhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence 345699999999999999875 3445433 22 38999999999999999999987 478999999988
Q ss_pred H
Q 025979 230 V 230 (245)
Q Consensus 230 ~ 230 (245)
.
T Consensus 579 ~ 579 (821)
T CHL00095 579 M 579 (821)
T ss_pred c
Confidence 4
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.44 E-value=4.6e-14 Score=124.19 Aligned_cols=87 Identities=25% Similarity=0.410 Sum_probs=71.0
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCc---ceeeecCCCCchHHHHHHHHhcc-------cceeeeechh
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR---GVLLYGPPGTGKTMLAKAVANHT-------TAAFIRVVGS 227 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~---gvLl~GPPGtGKT~lAkalA~~l-------~~~~~~v~~s 227 (245)
.++++|++.+|+.|++.+.++... ......|+.++. +++||||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 468999999999999998875443 333456776444 38999999999999999999864 3478999999
Q ss_pred HHHHHHhccccccccccC
Q 025979 228 EFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 228 ~l~~~~~Ge~~~~vr~iF 245 (245)
+++.+|+|+++..++++|
T Consensus 84 ~l~~~~~g~~~~~~~~~~ 101 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVI 101 (261)
T ss_pred HhhhhhccchHHHHHHHH
Confidence 999999999988877764
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.43 E-value=8.2e-14 Score=124.35 Aligned_cols=86 Identities=29% Similarity=0.447 Sum_probs=74.2
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCC---CcceeeecCCCCchHHHHHHHHhccc-------ceeeeechhH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP---PRGVLLYGPPGTGKTMLAKAVANHTT-------AAFIRVVGSE 228 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~---~~gvLl~GPPGtGKT~lAkalA~~l~-------~~~~~v~~s~ 228 (245)
++++|++++|++|.+.+.+ +..++.+.+.|+.+ ..++||+||||||||++|+++|..+. .+|+.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3699999999999999988 67788888899875 33699999999999999999998772 3799999999
Q ss_pred HHHHHhccccccccccC
Q 025979 229 FVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 229 l~~~~~Ge~~~~vr~iF 245 (245)
++++|+|+++.+++++|
T Consensus 101 l~~~~~g~~~~~~~~~~ 117 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEIL 117 (284)
T ss_pred HhHhhcccchHHHHHHH
Confidence 99999999987776654
No 48
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.38 E-value=3.4e-13 Score=132.62 Aligned_cols=92 Identities=39% Similarity=0.751 Sum_probs=85.2
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
....+|+|+.|.+..++++.+.+.. +.++..+..++...|+|+||+||||||||++|+++|++++.+|+.++++++.++
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 3457899999999999999999987 677888888899999999999999999999999999999999999999999999
Q ss_pred HhccccccccccC
Q 025979 233 YLGEVWLKHKQIF 245 (245)
Q Consensus 233 ~~Ge~~~~vr~iF 245 (245)
|+|.++..++++|
T Consensus 225 ~~g~~~~~~~~~f 237 (644)
T PRK10733 225 FVGVGASRVRDMF 237 (644)
T ss_pred hhcccHHHHHHHH
Confidence 9999999998876
No 49
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.33 E-value=5.9e-13 Score=139.47 Aligned_cols=54 Identities=28% Similarity=0.541 Sum_probs=49.9
Q ss_pred CcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH
Q 025979 180 THHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233 (245)
Q Consensus 180 ~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~ 233 (245)
+......++|+.+|+||||+||||||||+||||+|.++++||+.|++++++++|
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNK 1670 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcc
Confidence 345566889999999999999999999999999999999999999999999876
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.8e-13 Score=118.97 Aligned_cols=89 Identities=26% Similarity=0.304 Sum_probs=67.5
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhc-cCCCcceeeecCCCCchHHHHHHHHhcc---------cceeeeech
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVG 226 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g-~~~~~gvLl~GPPGtGKT~lAkalA~~l---------~~~~~~v~~ 226 (245)
.|+.++=-...|+++..++...+...+.-..-. +...|=+|||||||||||+|+||+|+.+ ...++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 466666566788899888765433222111111 2344559999999999999999999988 456899999
Q ss_pred hHHHHHHhccccccccccC
Q 025979 227 SEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 227 s~l~~~~~Ge~~~~vr~iF 245 (245)
-.+++||.+|+.+.|..+|
T Consensus 220 hsLFSKWFsESgKlV~kmF 238 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMF 238 (423)
T ss_pred hHHHHHHHhhhhhHHHHHH
Confidence 9999999999999998887
No 51
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.21 E-value=3.7e-12 Score=99.06 Aligned_cols=50 Identities=46% Similarity=0.749 Sum_probs=47.0
Q ss_pred eeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
+|||||||||||++|+.+|+.++.+|+.++++++.+.+.+++.+.++++|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 50 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFF 50 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999998888765
No 52
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.20 E-value=4.3e-12 Score=117.94 Aligned_cols=87 Identities=28% Similarity=0.467 Sum_probs=67.6
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhh-ccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH-HHhc-
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQI-GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLG- 235 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~-g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~-~~~G- 235 (245)
.-|+|++++++.+..++........+...+ +-.+|+++||+||||||||++|+++|..++.+|+.++++.+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 358999999999988876432211111111 1124688999999999999999999999999999999999985 8999
Q ss_pred cccccccccC
Q 025979 236 EVWLKHKQIF 245 (245)
Q Consensus 236 e~~~~vr~iF 245 (245)
+.+..+|++|
T Consensus 92 dvE~i~r~l~ 101 (441)
T TIGR00390 92 DVESMVRDLT 101 (441)
T ss_pred CHHHHHHHHH
Confidence 6788888775
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.19 E-value=1.8e-11 Score=105.20 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=47.1
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
+-+++|++|++..+..+.-++..... .-.+...+|||||||||||+||..||++++.+|..++++.+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i 86 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI 86 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh
Confidence 34789999999999998776653111 11233569999999999999999999999999999887643
No 54
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7.8e-12 Score=124.87 Aligned_cols=94 Identities=29% Similarity=0.390 Sum_probs=71.6
Q ss_pred ccccccccCCCccccccccccCCCCC------ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCC---cceeeec
Q 025979 130 SNALVDVLPPEADSSISLLSQSEKPD------VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP---RGVLLYG 200 (245)
Q Consensus 130 ~~~~~~il~~~~~~~~~~~~~~~~~~------~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~---~gvLl~G 200 (245)
...+..+...|++.++......+... ..-+.|+|+++++..|.++|.. .+.|+..+ -.+||.|
T Consensus 527 ~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflG 598 (898)
T KOG1051|consen 527 ESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLG 598 (898)
T ss_pred ccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEEC
Confidence 34566677778777766554333222 3345799999999999999987 44555543 3399999
Q ss_pred CCCCchHHHHHHHHhcc---cceeeeechhHHHH
Q 025979 201 PPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 231 (245)
Q Consensus 201 PPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~ 231 (245)
|.|||||-+|+++|..+ .-.|+++++|+|++
T Consensus 599 pdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e 632 (898)
T KOG1051|consen 599 PDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE 632 (898)
T ss_pred CCchhHHHHHHHHHHHHcCCccceEEechhhhhh
Confidence 99999999999999988 66799999999875
No 55
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.14 E-value=1.1e-11 Score=115.34 Aligned_cols=85 Identities=28% Similarity=0.475 Sum_probs=66.2
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccC---CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH-HHh
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGID---PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYL 234 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~---~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~-~~~ 234 (245)
..|+|++++++.+..++........+.. +.. .|+++||+||||||||++|++||..++.+|+++++++|.+ .|+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~--~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPE--ELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCc--ccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcc
Confidence 3589999999999888853211111000 111 2578999999999999999999999999999999999996 799
Q ss_pred c-cccccccccC
Q 025979 235 G-EVWLKHKQIF 245 (245)
Q Consensus 235 G-e~~~~vr~iF 245 (245)
| +.+..+|++|
T Consensus 93 G~d~e~~ir~L~ 104 (443)
T PRK05201 93 GRDVESIIRDLV 104 (443)
T ss_pred cCCHHHHHHHHH
Confidence 9 6678888765
No 56
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.9e-11 Score=110.73 Aligned_cols=74 Identities=30% Similarity=0.442 Sum_probs=67.4
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
-+|+.+.--.+.+++|.+-+..+.+..+.|.+.|....||.|||||||||||++..|+|+.++-.++-+..+++
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v 271 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV 271 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc
Confidence 78888888888999999999999999999999999999999999999999999999999999888777765443
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.96 E-value=1.6e-10 Score=115.43 Aligned_cols=92 Identities=25% Similarity=0.362 Sum_probs=67.7
Q ss_pred ccccccCCCccccccccccCCCCC------ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCC---Ccc-eeeecC
Q 025979 132 ALVDVLPPEADSSISLLSQSEKPD------VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP---PRG-VLLYGP 201 (245)
Q Consensus 132 ~~~~il~~~~~~~~~~~~~~~~~~------~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~---~~g-vLl~GP 201 (245)
.+..++..|++.++..+...+... .....|+|++.+++.|.+.+.. .+.|+.. |.| +||+||
T Consensus 421 ~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp 492 (731)
T TIGR02639 421 DIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGP 492 (731)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECC
Confidence 345555566666655443322222 2355689999999999988865 3455543 344 899999
Q ss_pred CCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 202 PGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 202 PGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
||||||++|+++|..++.+|++++++++.+
T Consensus 493 ~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 493 TGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred CCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 999999999999999999999999999865
No 58
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.94 E-value=3.9e-10 Score=112.56 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=70.7
Q ss_pred ccccccccCCCccccccccccCCCCC------ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccC---CCc-ceeee
Q 025979 130 SNALVDVLPPEADSSISLLSQSEKPD------VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGID---PPR-GVLLY 199 (245)
Q Consensus 130 ~~~~~~il~~~~~~~~~~~~~~~~~~------~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~---~~~-gvLl~ 199 (245)
...+..++..|++.++..+...+... ..-..|+|++++++.|.++|.. .+.|+. .|. .+||+
T Consensus 423 ~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~--------~~~gl~~~~kp~~~~Lf~ 494 (758)
T PRK11034 423 VADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKM--------SRAGLGHEHKPVGSFLFA 494 (758)
T ss_pred hhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHH--------HhccccCCCCCcceEEEE
Confidence 34566778888888877665433222 1234589999999999999875 233443 233 49999
Q ss_pred cCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 200 GPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 200 GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
||||||||++|+++|..++.+|++++++++.
T Consensus 495 GP~GvGKT~lAk~LA~~l~~~~i~id~se~~ 525 (758)
T PRK11034 495 GPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEeechhhc
Confidence 9999999999999999999999999999984
No 59
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.92 E-value=1e-09 Score=98.09 Aligned_cols=63 Identities=29% Similarity=0.440 Sum_probs=50.4
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+|++++|+++.++.+..++.... ..-..+..++||||||||||++|+++|++++..+..+.++
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~ 64 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK--------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGP 64 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccc
Confidence 58899999999999998885421 1113456799999999999999999999998887666544
No 60
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.91 E-value=5.6e-10 Score=104.52 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=58.0
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhh--hccC-CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH-HHHhc
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQ--IGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV-QKYLG 235 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~--~g~~-~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~-~~~~G 235 (245)
.|+|++.+++.+..++..++........ -... +..++||+||||||||++|+++|..++++|++++++.+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 4899999999998777432211100000 0111 345699999999999999999999999999999999886 46888
Q ss_pred ccc
Q 025979 236 EVW 238 (245)
Q Consensus 236 e~~ 238 (245)
+..
T Consensus 152 ~d~ 154 (412)
T PRK05342 152 EDV 154 (412)
T ss_pred chH
Confidence 753
No 61
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.88 E-value=1e-09 Score=100.60 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=60.4
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCC-cceeeecCCCCchHHHHHHHHhcccc-------eeeeech----h
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP-RGVLLYGPPGTGKTMLAKAVANHTTA-------AFIRVVG----S 227 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~-~gvLl~GPPGtGKT~lAkalA~~l~~-------~~~~v~~----s 227 (245)
++.|+++.++++.+++... ..|.... +.++|+||||||||++|++||+.++. +++.+.+ |
T Consensus 52 ~~~G~~~~i~~lv~~l~~~--------a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSA--------AQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHH--------HhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 8999999999888877652 2344433 55899999999999999999999977 9999998 7
Q ss_pred HHHHHHhcccccccccc
Q 025979 228 EFVQKYLGEVWLKHKQI 244 (245)
Q Consensus 228 ~l~~~~~Ge~~~~vr~i 244 (245)
.+.+..+|-....+|+.
T Consensus 124 p~~e~Pl~l~p~~~r~~ 140 (361)
T smart00763 124 PMHEDPLHLFPDELRED 140 (361)
T ss_pred CCccCCcccCCHHHHHH
Confidence 77777776666655543
No 62
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.86 E-value=1.7e-09 Score=108.10 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=64.2
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeech
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVG 226 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~~ 226 (245)
.+++++|.++.+.++.+.+.. ....++|||||||||||++|+++|..+ +..++.+++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 457899999888877766644 134579999999999999999999987 788999999
Q ss_pred hHHH--HHHhccccccccccC
Q 025979 227 SEFV--QKYLGEVWLKHKQIF 245 (245)
Q Consensus 227 s~l~--~~~~Ge~~~~vr~iF 245 (245)
+.++ .+|.|+.+..++++|
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~ 267 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVV 267 (731)
T ss_pred HHHhhhccccchHHHHHHHHH
Confidence 9998 589999999988775
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.1e-09 Score=98.74 Aligned_cols=60 Identities=35% Similarity=0.556 Sum_probs=46.7
Q ss_pred CceeccCCcchhhh---HHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 155 DVTYNDIGGCDIQK---QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~---~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+-++++++|++... .-|+++|.. +...+++||||||||||++|+.||+.++..|..++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 45678888887654 344555443 3345699999999999999999999999999999754
No 64
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.83 E-value=3.6e-09 Score=96.07 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=52.4
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+.+|++++|.++.++.+..++.... ..-.++.++|||||||||||++|+++|++++..+..++++
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~ 85 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGP 85 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecc
Confidence 3588999999999999988875411 1113567799999999999999999999999888776654
No 65
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.82 E-value=3.7e-09 Score=93.39 Aligned_cols=67 Identities=27% Similarity=0.405 Sum_probs=54.4
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
+-.++|.+|++.+++.+.=+|.-. +..-...-.+|||||||.|||+||..+|+++|..+-..+++.+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AA--------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAA--------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHH--------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence 456899999999999999888652 2222344559999999999999999999999999888877655
No 66
>PRK04195 replication factor C large subunit; Provisional
Probab=98.79 E-value=4.2e-09 Score=100.54 Aligned_cols=69 Identities=39% Similarity=0.565 Sum_probs=57.0
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
...+.++++++|.+.+++.+..++.... .| .+++.+|||||||||||++|+++|++++..++.++.++.
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 3345678999999999999999986522 11 246789999999999999999999999999999987753
No 67
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.75 E-value=6.6e-09 Score=92.62 Aligned_cols=55 Identities=31% Similarity=0.411 Sum_probs=46.1
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+..+-+++++.|++.+++.+...+.. . ....+|||||||||||+.|++.|+++..
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-~------------~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-R------------ILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-c------------CCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 44556889999999999999998865 1 1234899999999999999999999865
No 68
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.75 E-value=4.9e-09 Score=106.01 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=64.5
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeech
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVG 226 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~~ 226 (245)
.+++++|.++.++++.+.+.. ...++++|+||||||||++|+++|..+ +.+|+.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 467899999988888887665 245679999999999999999999976 478999999
Q ss_pred hHHH--HHHhccccccccccC
Q 025979 227 SEFV--QKYLGEVWLKHKQIF 245 (245)
Q Consensus 227 s~l~--~~~~Ge~~~~vr~iF 245 (245)
+.++ .+|.|+.+..++++|
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~ 264 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIF 264 (821)
T ss_pred HHHhccCCCccHHHHHHHHHH
Confidence 9998 589999988888764
No 69
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.73 E-value=5.5e-09 Score=97.71 Aligned_cols=79 Identities=25% Similarity=0.394 Sum_probs=56.7
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHH----HhhhccC-CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH-HH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHEL----YKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV-QK 232 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~----~~~~g~~-~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~-~~ 232 (245)
+-|+|++++++.+..++......-.. ...-++. ...++||+||||||||++|+++|..++.+|..++++.+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 45899999999998877321111000 0000111 134699999999999999999999999999999998876 36
Q ss_pred Hhccc
Q 025979 233 YLGEV 237 (245)
Q Consensus 233 ~~Ge~ 237 (245)
|+|+.
T Consensus 157 yvG~d 161 (413)
T TIGR00382 157 YVGED 161 (413)
T ss_pred ccccc
Confidence 88875
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=1.9e-08 Score=95.74 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=45.4
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.+-+|+|++|++.+++.|..++... ..+.++|||||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4567899999999999988877652 24567999999999999999999998865
No 71
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.67 E-value=1.7e-08 Score=102.38 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=61.9
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeech
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVG 226 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~~ 226 (245)
.+++++|.+..+.++.+.+.. ....+++|+||||||||++|+++|..+ +.+++.++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 467899998876666666544 133569999999999999999999987 789999999
Q ss_pred hHHH--HHHhccccccccccC
Q 025979 227 SEFV--QKYLGEVWLKHKQIF 245 (245)
Q Consensus 227 s~l~--~~~~Ge~~~~vr~iF 245 (245)
+.++ .+|.|+.++.++++|
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~ 263 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVL 263 (857)
T ss_pred hhhhhccchhhhhHHHHHHHH
Confidence 9887 679999988888765
No 72
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.66 E-value=2e-08 Score=91.95 Aligned_cols=74 Identities=28% Similarity=0.428 Sum_probs=52.8
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc--ceeeeechhHHHHHHh
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEFVQKYL 234 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~s~l~~~~~ 234 (245)
..+.++|+.++.+..--.+.+ -+.|--.++++||.||||||||.||-++|+++| .||+.+++|++.+.-+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~m--------Ik~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~ 93 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDM--------IKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV 93 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHH--------HHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred ccccccChHHHHHHHHHHHHH--------HhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence 346789999998887766655 112222468899999999999999999999995 9999999999976555
Q ss_pred cccc
Q 025979 235 GEVW 238 (245)
Q Consensus 235 Ge~~ 238 (245)
-.+|
T Consensus 94 kKTE 97 (398)
T PF06068_consen 94 KKTE 97 (398)
T ss_dssp -HHH
T ss_pred CchH
Confidence 4444
No 73
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.65 E-value=1.4e-08 Score=92.26 Aligned_cols=78 Identities=27% Similarity=0.412 Sum_probs=58.5
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc--cceeeeechhHHHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT--TAAFIRVVGSEFVQ 231 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l--~~~~~~v~~s~l~~ 231 (245)
++..-+.++|+.++.+.--=.+.+ -+.|--.++|+|+.||||||||.||-+||+++ +.||+.+++|++.+
T Consensus 34 ~k~~~dG~VGQ~~AReAaGvIv~m--------ik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 34 AKFIGDGLVGQEEAREAAGVIVKM--------IKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred EeEcCCcccchHHHHHhhhHHHHH--------HHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 334456789998887765544443 12233456899999999999999999999999 58999999999976
Q ss_pred HHhccccc
Q 025979 232 KYLGEVWL 239 (245)
Q Consensus 232 ~~~Ge~~~ 239 (245)
--+..++.
T Consensus 106 ~E~kKTE~ 113 (450)
T COG1224 106 LEVKKTEA 113 (450)
T ss_pred ecccHHHH
Confidence 55555443
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.64 E-value=2.8e-08 Score=89.98 Aligned_cols=63 Identities=25% Similarity=0.317 Sum_probs=48.5
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc-----ceeeeechh
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGS 227 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~-----~~~~~v~~s 227 (245)
..+.+++|+.|.+++++.|+.++... ....+|||||||||||++|+++|+++. ..++.++.+
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 34567899999999999988776541 123499999999999999999999872 346666665
Q ss_pred H
Q 025979 228 E 228 (245)
Q Consensus 228 ~ 228 (245)
+
T Consensus 74 d 74 (319)
T PLN03025 74 D 74 (319)
T ss_pred c
Confidence 4
No 75
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=2.3e-08 Score=93.71 Aligned_cols=60 Identities=32% Similarity=0.511 Sum_probs=49.3
Q ss_pred CceeccCCcchhhhHH---HHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 155 DVTYNDIGGCDIQKQE---IREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~---i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+-+++|++|.+..+.. +..++.. .....++|+||||||||++|+++|+.++..|+.++.+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 3567899999988666 7777754 1234699999999999999999999999999998765
No 76
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.63 E-value=3.9e-08 Score=88.68 Aligned_cols=65 Identities=29% Similarity=0.420 Sum_probs=51.3
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc-----ceeeeechh
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGS 227 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~-----~~~~~v~~s 227 (245)
..+.+++++.|.+.+++.+..++..+ ....++||||||||||++|+++|+++. .+++.++++
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 34567899999999999998887541 122599999999999999999999873 356778877
Q ss_pred HHH
Q 025979 228 EFV 230 (245)
Q Consensus 228 ~l~ 230 (245)
++.
T Consensus 76 ~~~ 78 (337)
T PRK12402 76 DFF 78 (337)
T ss_pred hhh
Confidence 764
No 77
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.4e-08 Score=91.62 Aligned_cols=85 Identities=28% Similarity=0.435 Sum_probs=61.0
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhc-cCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH-HHHhcc-
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV-QKYLGE- 236 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g-~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~-~~~~Ge- 236 (245)
-++|++++|+.+.-++.-......+-..+. --.|+++|+.||+|+|||.+||-+|.-.++||+.|-.+.|. -.|+|.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrD 95 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRD 95 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccccccc
Confidence 479999999988766643211111111111 12579999999999999999999999999999999988876 467774
Q ss_pred cccccccc
Q 025979 237 VWLKHKQI 244 (245)
Q Consensus 237 ~~~~vr~i 244 (245)
.+.+||++
T Consensus 96 VesivRDL 103 (444)
T COG1220 96 VESIIRDL 103 (444)
T ss_pred HHHHHHHH
Confidence 45555553
No 78
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.59 E-value=5e-08 Score=87.67 Aligned_cols=66 Identities=30% Similarity=0.344 Sum_probs=53.7
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
.+..+.+++++.|.+..++.+..++.. | ..|+.+|||||||+|||++|+++++.++.+++.+++++
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 344557889999999999999988753 1 23455777999999999999999999998888888764
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=3.9e-08 Score=91.72 Aligned_cols=60 Identities=25% Similarity=0.424 Sum_probs=49.2
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.|++|+|++.+++.|++++..+...+ ...+...+.++||+||||+|||++|+++|..+.+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 47899999999999999998755432 2334456788999999999999999999987644
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=4.3e-08 Score=94.24 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=47.3
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+..+-+|+|++|++.+++.|..++..- ..+..+||+||||||||++|+++|+.+++
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345568999999999999999998641 24567999999999999999999998865
No 81
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=4.6e-08 Score=95.73 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=46.7
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+-+|++++|++.+++.|..++.. -..+..+||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999988864 124577999999999999999999998865
No 82
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=5.4e-08 Score=89.76 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=46.0
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+.+|++++|++..++.+..++... ..+..+||+||||||||++|+++|+.+.+
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34578999999999999998887641 24567899999999999999999998853
No 83
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.55 E-value=8e-08 Score=83.71 Aligned_cols=70 Identities=33% Similarity=0.461 Sum_probs=57.5
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSE 228 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~ 228 (245)
....+.++++.|.+.+++.|.+....++. | .|.+.+||||++|||||+++||+..+. |..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 34567889999999999999988866332 2 367789999999999999999999876 78888888766
Q ss_pred HH
Q 025979 229 FV 230 (245)
Q Consensus 229 l~ 230 (245)
+.
T Consensus 91 L~ 92 (249)
T PF05673_consen 91 LG 92 (249)
T ss_pred hc
Confidence 53
No 84
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.55 E-value=1.5e-07 Score=72.91 Aligned_cols=43 Identities=49% Similarity=0.923 Sum_probs=36.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~~ 234 (245)
..+.++++||||||||++++.+++.+ +.+++.++.+++...+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~ 63 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV 63 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhH
Confidence 45679999999999999999999998 88999999887765443
No 85
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.54 E-value=7e-08 Score=98.07 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=60.9
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeech
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVG 226 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~~ 226 (245)
.+++++|.+..+.++.+.+.. ...++++|+||||||||++|+++|..+ +.+++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 457799998876666666544 233568999999999999999999875 678999999
Q ss_pred hHHH--HHHhccccccccccC
Q 025979 227 SEFV--QKYLGEVWLKHKQIF 245 (245)
Q Consensus 227 s~l~--~~~~Ge~~~~vr~iF 245 (245)
+.++ .+|.|+.++.++.+|
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l 258 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVL 258 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHH
Confidence 9887 679999888877664
No 86
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=9.4e-08 Score=89.21 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=45.7
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.+.+|++|+|++.+++.|+.++.. -..+..+|||||||||||++|+++|+.+.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456789999999999999888764 134567999999999999999999998865
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=9.1e-08 Score=90.87 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=46.1
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+-+|+|++|++.++..|..++... ..+..+|||||||||||++|+++|+.+++
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 34568999999999999999887651 23456899999999999999999999875
No 88
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.49 E-value=3.1e-07 Score=78.30 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=47.0
Q ss_pred CceeccCC--cchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 155 DVTYNDIG--GCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 155 ~~~~~dv~--Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
..++++.. +.....+.+++.+.. ..+..++|+||||||||++|+++++.+ +.+++.++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 34556654 344456666665431 245679999999999999999999876 467888998887
Q ss_pred HHH
Q 025979 230 VQK 232 (245)
Q Consensus 230 ~~~ 232 (245)
...
T Consensus 78 ~~~ 80 (226)
T TIGR03420 78 AQA 80 (226)
T ss_pred HHh
Confidence 653
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=9.8e-08 Score=91.13 Aligned_cols=54 Identities=28% Similarity=0.441 Sum_probs=45.1
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+.+|+|++|++.+++.+..++.. -..+.++||+||||||||++|+.+|..++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 3457899999999999999888764 13467899999999999999999998663
No 90
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.49 E-value=1.2e-07 Score=91.46 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=47.0
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCC-cceeeecCCCCchHHHHHHHHhcc-cceeeeech
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP-RGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVVG 226 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~-~gvLl~GPPGtGKT~lAkalA~~l-~~~~~~v~~ 226 (245)
-|+|+.|+++++++|.+++.. ...|+... +-+||+||||+|||+||++||+.+ ..+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~--------Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRH--------AAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHH--------HHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 467999999999999988743 22233332 348899999999999999999987 446666654
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=9.8e-08 Score=91.65 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=46.6
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+..+.+|+||+|++.+++.|..++... ..+..+|||||||||||++|+++|+.+.+
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 345578999999999999999988751 24456899999999999999999998854
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.47 E-value=8.8e-08 Score=97.20 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=59.9
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeec
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVV 225 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~ 225 (245)
-.+++++|.+..+.++.+.+.. ....+++|+||||||||++|+.+|..+ +..++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 3567899998876666555433 133568999999999999999999875 36688899
Q ss_pred hhHHH--HHHhccccccccccC
Q 025979 226 GSEFV--QKYLGEVWLKHKQIF 245 (245)
Q Consensus 226 ~s~l~--~~~~Ge~~~~vr~iF 245 (245)
.+.+. .+|.|+.+..++++|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii 272 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVI 272 (852)
T ss_pred hhhhhcccccchHHHHHHHHHH
Confidence 88887 378999888887764
No 93
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.47 E-value=1.3e-07 Score=94.78 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=59.7
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeechh
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGS 227 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~~s 227 (245)
++.++|-+..+.++.+.+.. ....++||+||||||||++|+++|... +..++.++.+
T Consensus 185 ~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 45788888887777776654 134568999999999999999999764 6778888888
Q ss_pred HHH--HHHhccccccccccC
Q 025979 228 EFV--QKYLGEVWLKHKQIF 245 (245)
Q Consensus 228 ~l~--~~~~Ge~~~~vr~iF 245 (245)
.++ .+|.|+.+..++++|
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~ 271 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALL 271 (758)
T ss_pred HHhcccchhhhHHHHHHHHH
Confidence 887 678999888877654
No 94
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.4e-07 Score=90.59 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=46.8
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+..+-+|+|++|++..+..+..++.. -..+.++||+||||||||++|+++|+.+++
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567899999999999999887654 124567999999999999999999999865
No 95
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.46 E-value=6.2e-08 Score=87.92 Aligned_cols=48 Identities=25% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH--Hhcccc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK--YLGEVW 238 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~--~~Ge~~ 238 (245)
...+.+||.||||||||++|+.+|..+++++++|.++..+.. ++|...
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCce
Confidence 345779999999999999999999999999999988876655 677543
No 96
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=9.4e-08 Score=91.39 Aligned_cols=68 Identities=54% Similarity=1.029 Sum_probs=63.4
Q ss_pred cCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 177 LPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 177 ~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
.|+.+++.+..+++.++++++++||||||||++++++|.. +..++.+++++.+++|.|++++..+.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELF 69 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999 8878889999999999999999988765
No 97
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.46 E-value=9.8e-08 Score=84.22 Aligned_cols=43 Identities=42% Similarity=0.581 Sum_probs=35.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeech------hHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG------SEFVQKYLG 235 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~------s~l~~~~~G 235 (245)
.+.+||+||||||||++|+++|..+|.+|+++.+ ++++..|.|
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~ 69 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAG 69 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcc
Confidence 3569999999999999999999999999999854 466655544
No 98
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.45 E-value=9.5e-08 Score=92.35 Aligned_cols=64 Identities=28% Similarity=0.521 Sum_probs=49.9
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------ccee
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAF 221 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~ 221 (245)
.....+|++++|.+..++.++..+.. ..+..+||+||||||||++|+++.+.+ +.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 34557899999999999888866432 134569999999999999999997642 4689
Q ss_pred eeechhH
Q 025979 222 IRVVGSE 228 (245)
Q Consensus 222 ~~v~~s~ 228 (245)
+.++++.
T Consensus 125 i~id~~~ 131 (531)
T TIGR02902 125 VEIDATT 131 (531)
T ss_pred EEEcccc
Confidence 9998763
No 99
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.44 E-value=1.3e-07 Score=74.94 Aligned_cols=34 Identities=50% Similarity=0.685 Sum_probs=30.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
+|||+||||||||++|+.+|..++.+++.+.++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~ 34 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSS 34 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence 4899999999999999999999999998887664
No 100
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.44 E-value=1.8e-07 Score=93.32 Aligned_cols=60 Identities=38% Similarity=0.572 Sum_probs=47.8
Q ss_pred CceeccCCcchhhhH---HHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 155 DVTYNDIGGCDIQKQ---EIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~---~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+.+++|++|.+..+. .+++++.. .....++||||||||||++|+++|+.++.+|+.++.+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 467889999998774 45555543 1234699999999999999999999999999888765
No 101
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.6e-07 Score=94.50 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccce
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 220 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~ 220 (245)
..+.+|++|+|++.+++.|+.++..- ..+..+||+||||||||++|+++|+.+++.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 44578999999999999999887641 235668999999999999999999998764
No 102
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.43 E-value=1.1e-07 Score=86.81 Aligned_cols=59 Identities=31% Similarity=0.532 Sum_probs=40.9
Q ss_pred CceeccCCcchhhhHH---HHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccce---eeeech
Q 025979 155 DVTYNDIGGCDIQKQE---IREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA---FIRVVG 226 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~---i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~---~~~v~~ 226 (245)
+-+.+|.+|++....+ |+.+|+. ..-.+++||||||||||+||+.||+...-+ |+.++.
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 3456777777764332 3333332 223459999999999999999999988666 666654
No 103
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.42 E-value=2.8e-07 Score=78.56 Aligned_cols=46 Identities=39% Similarity=0.589 Sum_probs=36.3
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|+||.|++..|..+.-+... ..++||+||||||||++|++++.-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999888766543 3579999999999999999999765
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.42 E-value=5.9e-07 Score=77.10 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCCceeccCC-cc-hhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 153 KPDVTYNDIG-GC-DIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 153 ~~~~~~~dv~-Gl-~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
.+..+++++. |. ......+++.+. +......++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3446677754 32 334444444332 23355679999999999999999999875 6678888887
Q ss_pred HHHH
Q 025979 228 EFVQ 231 (245)
Q Consensus 228 ~l~~ 231 (245)
++..
T Consensus 80 ~~~~ 83 (227)
T PRK08903 80 SPLL 83 (227)
T ss_pred HhHH
Confidence 7654
No 105
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.42 E-value=2.4e-07 Score=77.35 Aligned_cols=43 Identities=37% Similarity=0.687 Sum_probs=34.7
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~ 233 (245)
..+.|++|+||||||||+||.++|.++ |.+...++.+++++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 355789999999999999999999877 7788889999998775
No 106
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.7e-08 Score=88.38 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=56.1
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhh----ccCCC-cceeeecCCCCchHHHHHHHHhcccceeeeechhHHH-HH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQI----GIDPP-RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV-QK 232 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~----g~~~~-~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~-~~ 232 (245)
+=|+|++.+|+.+.=+|- .|....... .+.-. .++||.||+|||||+||+.+|+.+++||.--+...+. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVY---NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVY---NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeeh---hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 347888888877654442 222211111 12222 3499999999999999999999999999999999887 67
Q ss_pred Hhcccccc
Q 025979 233 YLGEVWLK 240 (245)
Q Consensus 233 ~~Ge~~~~ 240 (245)
|+||--.|
T Consensus 138 YVGEDVEN 145 (408)
T COG1219 138 YVGEDVEN 145 (408)
T ss_pred ccchhHHH
Confidence 99985433
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=2.2e-07 Score=89.79 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=46.3
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+-+|+|++|.+.+++.+..++... ..++.+||+||||||||++|+++|+.+++
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568999999999999999888651 24467899999999999999999998865
No 108
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.39 E-value=4.9e-07 Score=79.59 Aligned_cols=43 Identities=30% Similarity=0.537 Sum_probs=38.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~~ 234 (245)
.+.+++||||||||||+||-|||+++ |..++.+..+++++..-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 56789999999999999999999988 78889999999887653
No 109
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=2.4e-07 Score=91.27 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=47.3
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+...-+|+||+|++.+++.|..++... +.++++||+||||||||++|+++|+.+++
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 345678999999999999999988751 24577999999999999999999998754
No 110
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=2.6e-07 Score=89.32 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=45.6
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+.+|++++|.+.+++.+...+... ..+..+||+||||||||++|+++|+.+.+
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34568999999999999999888641 23466899999999999999999997754
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=2.8e-07 Score=89.86 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=46.1
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
...-+|+|++|++.+++.|..++... ..+..+||+||+|||||++|+++|+.+++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34567999999999999999988651 24566899999999999999999998764
No 112
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.37 E-value=4.5e-07 Score=81.06 Aligned_cols=52 Identities=31% Similarity=0.370 Sum_probs=43.0
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+.+|+|+.|.+++++.+..++... ....++||||||||||++++++++.+
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999887541 11248999999999999999999986
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=3.5e-07 Score=89.77 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=46.4
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+.+|++++|++.+++.|+.++..- ..+.++||+||||||||++|+++|+.+.+
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34568999999999999999887641 34567999999999999999999998866
No 114
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=3.7e-07 Score=88.89 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=45.3
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+-+|++++|.+.+++.+..++.. -..++++||+||||||||++|+++|+.+.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999999988754 12457799999999999999999999874
No 115
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.36 E-value=4e-07 Score=82.86 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=45.1
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+.+|++++|.+..++.+.+.+... ..++.+|||||||+|||++|+++|+.+.
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34568999999999999999887541 2456799999999999999999998874
No 116
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.36 E-value=4.1e-07 Score=89.28 Aligned_cols=80 Identities=28% Similarity=0.282 Sum_probs=62.1
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccccee----eee--
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF----IRV-- 224 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~----~~v-- 224 (245)
...|...++++.|.++.+..+..++.. +++++|+||||||||++|+++|+.++... +.+
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 345667889999999999988887764 24789999999999999999999996552 111
Q ss_pred ----chhHHHHHHhccccccccccC
Q 025979 225 ----VGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 225 ----~~s~l~~~~~Ge~~~~vr~iF 245 (245)
..+-+...+.|.+.++++..|
T Consensus 75 ~~~~~~~~~~~v~~~~g~~~~~~~~ 99 (608)
T TIGR00764 75 PEDPNMPRIVEVPAGEGREIVEDYK 99 (608)
T ss_pred CCCCchHHHHHHHHhhchHHHHHHH
Confidence 234566888899998887654
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=3.6e-07 Score=90.58 Aligned_cols=55 Identities=33% Similarity=0.425 Sum_probs=46.8
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+-+|++|+|++.+++.+...+... ..++.+|||||||||||++|+++|..+.+
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 45568999999999999999988651 24567999999999999999999998865
No 118
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=3.2e-07 Score=89.77 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+....+|+||+|++.+++.|.+++..- ..++.+||+||+|||||++|+.+|+.+++
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345578999999999999999998751 24467899999999999999999998865
No 119
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=3.6e-07 Score=89.55 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=46.2
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
...-+|+|++|.+.+++.|..++..- ..+..+|||||+|||||++|+++|+.+++
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568999999999999999987651 24566899999999999999999998865
No 120
>PRK08181 transposase; Validated
Probab=98.34 E-value=3.7e-07 Score=81.04 Aligned_cols=42 Identities=33% Similarity=0.505 Sum_probs=35.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~ 233 (245)
...+++|+||||||||+||.|+|.++ |..++.++.++++..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 44679999999999999999999765 6778888888888765
No 121
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.4e-07 Score=84.69 Aligned_cols=70 Identities=26% Similarity=0.440 Sum_probs=48.4
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
+-.+++|+-......+|.+...- ..+ .+..-.|-+++|||||||||||++||-||...|..+-.+.+.++
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~a-TaN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV 420 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIA-TAN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV 420 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHH-hcc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc
Confidence 34466666666666666555432 111 11123456789999999999999999999999998887776665
No 122
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.34 E-value=4.1e-07 Score=69.50 Aligned_cols=38 Identities=37% Similarity=0.661 Sum_probs=32.2
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccce---eeeechhHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAA---FIRVVGSEFV 230 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~---~~~v~~s~l~ 230 (245)
+..++|+||||||||++++.+|..+... ++.++++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 3568999999999999999999999765 8888877544
No 123
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=4.1e-07 Score=88.45 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=46.3
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+-+|++++|++.+++.+...+... ..++.+|||||||||||++|+.+|+.+++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45568999999999999999888651 24567999999999999999999998753
No 124
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=3.8e-07 Score=89.70 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=46.5
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
...-+|++|+|++.+++.|...+..- ..+..+||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 44578999999999999999888651 23456899999999999999999999876
No 125
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.32 E-value=2.9e-07 Score=72.81 Aligned_cols=41 Identities=44% Similarity=0.601 Sum_probs=27.7
Q ss_pred eeeecCCCCchHHHHHHHHhcccceeeeechh-HHH-HHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS-EFV-QKYLGE 236 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s-~l~-~~~~Ge 236 (245)
+||+|+||+|||++|+++|..++..|.||.+. +++ +...|-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~ 44 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGF 44 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceee
Confidence 79999999999999999999999999999764 443 555553
No 126
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=3.9e-07 Score=90.38 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=46.7
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+...-+|++|+|++.+++.|..++..- ..++.+|||||+|||||++|+++|+.+++
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345578999999999999999887641 23566899999999999999999998864
No 127
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=4.9e-07 Score=88.25 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=46.6
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+-+|+|++|++.+++.|..++..- ..++.+|||||||||||++|+++|+.+++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 45578999999999999999888641 24567999999999999999999998854
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=5.1e-07 Score=88.31 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=46.9
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccce
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 220 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~ 220 (245)
..-+|+|++|++..++.|..++..- ..+..+|||||||||||++|+++|+.+.+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4468999999999999999887641 346789999999999999999999988654
No 129
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.31 E-value=4.3e-07 Score=69.89 Aligned_cols=31 Identities=35% Similarity=0.656 Sum_probs=27.4
Q ss_pred eeeecCCCCchHHHHHHHHhcccceeeeech
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 226 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~ 226 (245)
+++.||||||||++|+.||+.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988765554
No 130
>PRK08116 hypothetical protein; Validated
Probab=98.31 E-value=6.7e-07 Score=79.34 Aligned_cols=42 Identities=36% Similarity=0.490 Sum_probs=36.7
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~~ 234 (245)
+.|++||||||||||+||.|+|+++ +.+++.++.+++++.+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 4679999999999999999999986 78889999998877653
No 131
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.30 E-value=1.3e-06 Score=82.85 Aligned_cols=43 Identities=28% Similarity=0.525 Sum_probs=37.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcc-----cceeeeechhHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQKYLGE 236 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~l~~~~~Ge 236 (245)
+.++||||||||||+|++++|+++ +..++.+++.++++.+++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 569999999999999999999987 5668899999988777654
No 132
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=6.8e-07 Score=82.24 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=46.6
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+..+.+|++++|.+..++.+...+... ..+..+|||||||+|||++|+++|+.+.+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345578999999999999999888641 24567999999999999999999998754
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=6e-07 Score=85.20 Aligned_cols=54 Identities=28% Similarity=0.380 Sum_probs=45.4
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.+.+|+|++|.+.++..+...+..- ..+..+|||||||+|||++|+++|+.+.+
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4478999999999999999888641 24567999999999999999999997743
No 134
>PRK12377 putative replication protein; Provisional
Probab=98.30 E-value=6.8e-07 Score=78.45 Aligned_cols=41 Identities=29% Similarity=0.450 Sum_probs=35.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~ 233 (245)
..+++|+||||||||+||.|+|+.+ +..++.++.++++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 3679999999999999999999988 5677888888887644
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.29 E-value=1.6e-06 Score=81.01 Aligned_cols=43 Identities=28% Similarity=0.513 Sum_probs=37.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc-----cceeeeechhHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQKYLG 235 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~l~~~~~G 235 (245)
.+.++||||||||||+|++++++++ +..++.+++++++..+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~ 183 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVN 183 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHH
Confidence 3568999999999999999999987 577899999988877654
No 136
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.28 E-value=8.1e-07 Score=80.28 Aligned_cols=42 Identities=31% Similarity=0.472 Sum_probs=35.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~ 233 (245)
..+|++||||||||||+||.|+|+++ |.++..+..++++...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 45789999999999999999999998 6777778888876554
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=7e-07 Score=86.86 Aligned_cols=55 Identities=24% Similarity=0.412 Sum_probs=46.4
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+-+|+|++|++.+++.+...+..- ..++.+|||||||+|||++|+++|+.+.+
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 44568999999999999999988641 24567999999999999999999998854
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=7.6e-07 Score=85.22 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=45.7
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+-+|+++.|++.++..+...+..- ..++.+|||||||||||++|+.+|..+++
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568899999999999999888641 23456899999999999999999998753
No 139
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.25 E-value=1e-06 Score=86.63 Aligned_cols=62 Identities=31% Similarity=0.587 Sum_probs=48.6
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeee
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRV 224 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v 224 (245)
.-++++++|.+.....+...+..+ .+..++|+||||||||++|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 456789999999888887666432 23569999999999999999998655 4578999
Q ss_pred chhHH
Q 025979 225 VGSEF 229 (245)
Q Consensus 225 ~~s~l 229 (245)
+++.+
T Consensus 217 ~~~~l 221 (615)
T TIGR02903 217 DGTTL 221 (615)
T ss_pred echhc
Confidence 87654
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=7.7e-07 Score=87.05 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=45.9
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+...-+|++++|++.+++.|...+... ..+..+|||||||||||++|+++|+.+++
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345568999999999999998887641 13456899999999999999999988754
No 141
>PRK06893 DNA replication initiation factor; Validated
Probab=98.25 E-value=2.1e-06 Score=74.27 Aligned_cols=24 Identities=38% Similarity=0.528 Sum_probs=21.8
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..++||||||||||+|+.|+|+++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999886
No 142
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.25 E-value=1.1e-06 Score=80.07 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=36.4
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~ 233 (245)
..+++||||||||||+||.|+|+++ +..++.++.++++..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 3789999999999999999999987 7788889999987765
No 143
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=7.9e-07 Score=89.81 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=46.2
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
....+|++|+|++.+++.|..++..- ..++.+|||||+|||||++|+.+|+.+++
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 34568999999999999999887641 23466899999999999999999999864
No 144
>PRK06526 transposase; Provisional
Probab=98.24 E-value=6.6e-07 Score=78.82 Aligned_cols=42 Identities=29% Similarity=0.503 Sum_probs=34.7
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~ 233 (245)
.+.+++|+||||||||+||.+|+.++ |..++.++.+++++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 45679999999999999999999876 6667777788777655
No 145
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.23 E-value=7.9e-07 Score=79.35 Aligned_cols=72 Identities=33% Similarity=0.460 Sum_probs=53.6
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc--cceeeeechhHHHHHHhcc
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT--TAAFIRVVGSEFVQKYLGE 236 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l--~~~~~~v~~s~l~~~~~Ge 236 (245)
..++|+..+.+.---.+.+ ++. ++ -.++++||.||||||||.||-++++++ +.||..+.+|++.+.-+-.
T Consensus 38 ~g~vGQ~~AReAagiivdl-ik~----Kk---maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKK 109 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDL-IKS----KK---MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKK 109 (456)
T ss_pred cccccchhhhhhhhHHHHH-HHh----hh---ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhH
Confidence 4678888777665444433 111 11 145789999999999999999999999 6899999999998766555
Q ss_pred cc
Q 025979 237 VW 238 (245)
Q Consensus 237 ~~ 238 (245)
++
T Consensus 110 TE 111 (456)
T KOG1942|consen 110 TE 111 (456)
T ss_pred HH
Confidence 44
No 146
>PHA02244 ATPase-like protein
Probab=98.23 E-value=1.4e-06 Score=80.29 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=31.3
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeech
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 226 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~ 226 (245)
...+||+||||||||++|+++|..++.+|++++.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 4569999999999999999999999999999874
No 147
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.22 E-value=9.4e-07 Score=80.81 Aligned_cols=60 Identities=32% Similarity=0.419 Sum_probs=46.2
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc---------ceeeeechh
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT---------AAFIRVVGS 227 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~---------~~~~~v~~s 227 (245)
+++.|-++.++.|..++...+. | ..+.+++++||||||||++++++++.+. ..++.+++.
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 5789999999999888764221 1 2445699999999999999999998753 567777754
No 148
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.22 E-value=1.4e-06 Score=68.84 Aligned_cols=39 Identities=36% Similarity=0.670 Sum_probs=32.7
Q ss_pred eeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge 236 (245)
++++||||+|||++|+.++..++ +..++..++.....++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~~ 40 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAGE 40 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHccc
Confidence 68999999999999999999998 5557777777766553
No 149
>PRK06620 hypothetical protein; Validated
Probab=98.20 E-value=2.1e-06 Score=73.70 Aligned_cols=29 Identities=38% Similarity=0.508 Sum_probs=25.5
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceee
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFI 222 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~ 222 (245)
+.++||||||||||+|++++++..+..++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~ 73 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII 73 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc
Confidence 66999999999999999999998876543
No 150
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.2e-06 Score=85.57 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=46.0
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
....+|+||+|++.+++.|..++..- ..+..+||+||||||||++|+++|+.+.+
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 34567899999999999999888641 12457999999999999999999999865
No 151
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.19 E-value=4.2e-06 Score=72.68 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.6
Q ss_pred cceeeecCCCCchHHHHHHHHhccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..++||||||||||+|++++++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999998764
No 152
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.18 E-value=1.7e-06 Score=75.82 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=36.3
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~~ 234 (245)
.+++|+||||||||+||.++|.++ +..++.++.+++++.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~ 143 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK 143 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH
Confidence 579999999999999999999988 77888889999887554
No 153
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.6e-06 Score=85.28 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=45.6
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
...+|++++|.+.++..|..++..- ..+.++|||||||||||++|+++|+.+.+
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4467899999999999999888751 12356999999999999999999999865
No 154
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.17 E-value=1.9e-06 Score=78.37 Aligned_cols=36 Identities=44% Similarity=0.699 Sum_probs=32.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
.+.+||-||||||||++|+++|..++.+|+++.+..
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~ 78 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTP 78 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCC
Confidence 356999999999999999999999999999998763
No 155
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.16 E-value=1.9e-06 Score=78.69 Aligned_cols=51 Identities=29% Similarity=0.386 Sum_probs=40.7
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
....|+++.|++.+++.+.-+...+ ...++||+||||||||++|+++|+.+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3467899999999988877543221 11469999999999999999999988
No 156
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=4.4e-06 Score=79.07 Aligned_cols=41 Identities=22% Similarity=0.480 Sum_probs=35.3
Q ss_pred cceeeecCCCCchHHHHHHHHhcc-----cceeeeechhHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~l~~~~~ 234 (245)
+.++||||||||||+|++++|+++ +..++.+++++++..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 459999999999999999999986 45788889888877664
No 157
>PRK06921 hypothetical protein; Provisional
Probab=98.14 E-value=3.4e-06 Score=74.78 Aligned_cols=41 Identities=29% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc----cceeeeechhHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGSEFVQK 232 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s~l~~~ 232 (245)
...+++|+||||||||+|+.|+|+++ +..++.++..+++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 35679999999999999999999976 566777777776543
No 158
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.3e-06 Score=82.63 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+.+|++++|++.+++.+...+..- ..++.+|||||||+|||++|+++|+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 34568999999999999999888641 2456689999999999999999998873
No 159
>PRK13948 shikimate kinase; Provisional
Probab=98.13 E-value=2.3e-06 Score=71.73 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=37.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEV 237 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~ 237 (245)
++..++|.|++|||||++++.+|..++++|+ +...++.+..|.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i--D~D~~ie~~~g~s 52 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFI--DTDRYIERVTGKS 52 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEE--ECCHHHHHHHhCC
Confidence 5577999999999999999999999999997 5556666666654
No 160
>PRK08727 hypothetical protein; Validated
Probab=98.12 E-value=6.9e-06 Score=71.26 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=30.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 232 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~ 232 (245)
..++||||||||||+|+.|++.++ +...+.++..++...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~ 83 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR 83 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh
Confidence 449999999999999999998775 455566666665543
No 161
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.11 E-value=2.2e-06 Score=67.57 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=40.8
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcc--eeeecCCCCchHHHHHHHHhcc
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG--VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~g--vLl~GPPGtGKT~lAkalA~~l 217 (245)
..+.|++-+++.|..+|...+..+ .|.+- +.|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 468999999999999987644332 24444 5599999999999999999985
No 162
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.9e-06 Score=81.10 Aligned_cols=48 Identities=35% Similarity=0.552 Sum_probs=40.5
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..++.||.|+...|..+..+... .+++||+||||||||++|+-+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 45789999999999988866543 4679999999999999999887655
No 163
>PRK09183 transposase/IS protein; Provisional
Probab=98.10 E-value=3.3e-06 Score=74.52 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=33.8
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~ 233 (245)
...+++|+||||||||+||.+++..+ |..+..++.++++..+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l 145 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQL 145 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHH
Confidence 45679999999999999999998764 6667777878877544
No 164
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.09 E-value=3e-06 Score=78.37 Aligned_cols=62 Identities=31% Similarity=0.481 Sum_probs=46.9
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-----cceeeeechh
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGS 227 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s 227 (245)
..+.+.|-++..++|...+...+. | ..+.++++|||||||||++++.+++.+ +..++.+++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 345688888888888888753211 1 234569999999999999999999877 4678888764
No 165
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.2e-06 Score=79.85 Aligned_cols=44 Identities=36% Similarity=0.585 Sum_probs=40.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechhHHH-HHHhccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV-QKYLGEV 237 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~-~~~~Ge~ 237 (245)
.+|||.||+|+|||+||+.||+-+++||.-.++..+. ..|+||-
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeD 271 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGED 271 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhccccccc
Confidence 3599999999999999999999999999999999886 5788873
No 166
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.04 E-value=1.2e-05 Score=69.14 Aligned_cols=40 Identities=35% Similarity=0.692 Sum_probs=33.6
Q ss_pred ceeeecCCCCchHHHHHHHHhcc-----cceeeeechhHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~l~~~~~ 234 (245)
.+.+|||+|+|||+|..|+++++ +..++.+++.++...+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence 48999999999999999999875 56788899888877664
No 167
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.02 E-value=4.7e-06 Score=76.55 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=44.8
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+++...|++|+|+++.+..|.-.+..| ...|+||.||+|||||++||+++..+
T Consensus 9 ~~~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 9 KERPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred ccCCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455678999999999999998776653 22579999999999999999998876
No 168
>PRK05642 DNA replication initiation factor; Validated
Probab=98.01 E-value=5.4e-06 Score=71.99 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=33.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 232 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~ 232 (245)
.+.++||||+|||||+|++|+++++ +...+.++..+++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 3568999999999999999999764 567778888887653
No 169
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=7.2e-06 Score=75.88 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=44.8
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+.++++|+|.+.+++.+.+++..- ..+..+||+||+|+||+++|.++|+.+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999888751 345679999999999999999999977
No 170
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.00 E-value=7e-06 Score=79.13 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=45.7
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
.+.+.+|+.--...+++++..+..-+ .+-.+.+-+||+||||||||++++.||++++..+..-
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 34556777777777778887776411 1222334477899999999999999999998776654
No 171
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=5.7e-06 Score=81.33 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=45.1
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.+.+|++|+|.+.+++.|..++.. -..+..+|||||+|+|||++|+++|..+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999988864 12456799999999999999999999875
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=4.6e-06 Score=82.06 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=49.0
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeee
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 223 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~ 223 (245)
...+.+++++.|.+..++.+..++... .++..+.+.++|+||||||||++++.+|+.++..++.
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 344567899999999999988887641 1223344559999999999999999999998765533
No 173
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=6.7e-06 Score=74.23 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=41.9
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+|+++.|++.+++.+...+.. -..++.+||+||+|+|||++|+++|..+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 578999999999999888754 1245678999999999999999999976
No 174
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.99 E-value=5.1e-06 Score=63.41 Aligned_cols=44 Identities=36% Similarity=0.718 Sum_probs=33.6
Q ss_pred eeeecCCCCchHHHHHHHHhccc---------ceeeeechhHHHHHHhccccc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTT---------AAFIRVVGSEFVQKYLGEVWL 239 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~---------~~~~~v~~s~l~~~~~Ge~~~ 239 (245)
|.||||||+|||++|+.||..+. .-+.+-..+++.+.|.|+..-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vv 53 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVV 53 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEE
Confidence 57999999999999999887663 223345677888999887543
No 175
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=7e-06 Score=77.84 Aligned_cols=41 Identities=27% Similarity=0.501 Sum_probs=35.4
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~~ 234 (245)
+.++||||||+|||+|++++++.+ +..++.++.+++...+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~ 185 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLV 185 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHH
Confidence 569999999999999999999976 67888899888776554
No 176
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.98 E-value=1e-05 Score=67.00 Aligned_cols=59 Identities=29% Similarity=0.432 Sum_probs=40.6
Q ss_pred CCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 161 IGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 161 v~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
++|-+...+++.+.+... . ..+..||++|++||||+++|++|-+.. +.||+.|+++.+-
T Consensus 1 liG~s~~m~~~~~~~~~~----------a-~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~ 62 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------A-SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP 62 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------T-TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-
T ss_pred CEeCCHHHHHHHHHHHHH----------h-CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh
Confidence 355566666666665431 1 233569999999999999999998866 5799999997664
No 177
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1e-05 Score=79.88 Aligned_cols=51 Identities=33% Similarity=0.416 Sum_probs=42.6
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhcccccccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHK 242 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr 242 (245)
-.-.|||+|+||||||++.+++|+++|.+++.+++.+++..-.+-++-...
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~ 480 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQ 480 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHH
Confidence 334599999999999999999999999999999999998765555554433
No 178
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.97 E-value=8.3e-06 Score=73.71 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=43.7
Q ss_pred hhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhcc
Q 025979 167 QKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236 (245)
Q Consensus 167 ~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge 236 (245)
..+.+.+++...+.+.. -+.++..|.|.|+||||||++++.+|..+|++|+.+ ...+....|-
T Consensus 112 ~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~--D~~i~~~~G~ 174 (309)
T PRK08154 112 QLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL--NREIEREAGL 174 (309)
T ss_pred HHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH--HHHHHHHhCC
Confidence 44555555544222221 145667799999999999999999999999999844 4555554554
No 179
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=1.2e-05 Score=78.45 Aligned_cols=43 Identities=26% Similarity=0.495 Sum_probs=37.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcc-----cceeeeechhHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQKYLGE 236 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~l~~~~~Ge 236 (245)
+.++||||+|||||+|+.|+++++ +..++++++.+|++.|+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a 362 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS 362 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH
Confidence 349999999999999999999986 4678999999998887653
No 180
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.92 E-value=8e-06 Score=65.35 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=26.7
Q ss_pred eeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
++|+||||+|||++|+.++..++..++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D 31 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD 31 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCc
Confidence 689999999999999999999988876554
No 181
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.91 E-value=1.2e-05 Score=71.86 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=35.8
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
++.|.+.....+...+.... ..|..+||+||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 45666666667666655311 2334699999999999999999999886
No 182
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.90 E-value=8.7e-06 Score=70.70 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=42.3
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+..+..+.|++|-++.++++.-+... ..-..++|.||||||||+.+.++|+++
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 34456678999999999988866543 122359999999999999999999987
No 183
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.90 E-value=1.6e-05 Score=69.24 Aligned_cols=69 Identities=30% Similarity=0.451 Sum_probs=55.3
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSE 228 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~ 228 (245)
..+.+...++.|.+.+++.+.+....+.. | .|.+.|||||.-|||||++.||+-++. +..++.|+.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 34457889999999999999887765321 2 356779999999999999999998877 66788887766
Q ss_pred H
Q 025979 229 F 229 (245)
Q Consensus 229 l 229 (245)
+
T Consensus 124 l 124 (287)
T COG2607 124 L 124 (287)
T ss_pred H
Confidence 5
No 184
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.89 E-value=1.4e-05 Score=76.21 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=32.8
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.++|.+++++.+..++. ....+||+||||||||++|++++...+
T Consensus 21 ~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 45666666655554432 335599999999999999999999764
No 185
>PHA00729 NTP-binding motif containing protein
Probab=97.89 E-value=1.3e-05 Score=69.40 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.6
Q ss_pred cceeeecCCCCchHHHHHHHHhccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..++++||||||||++|.+||..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999864
No 186
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.88 E-value=2e-05 Score=74.51 Aligned_cols=46 Identities=30% Similarity=0.457 Sum_probs=34.2
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.+++.+.+...+.+...+. ..+.++|+||||||||++|+.+|..++
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556666665555554433 346799999999999999999998874
No 187
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.87 E-value=6.7e-06 Score=78.82 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=48.2
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccce
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 220 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~ 220 (245)
+..+-+|+|+.|++.+...|..++..- ....+.||.||-|||||++||.+|..+++.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 345568999999999999999998761 244679999999999999999999988654
No 188
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.86 E-value=1.2e-05 Score=65.86 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=36.4
Q ss_pred CCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccce---eeeechhHH
Q 025979 161 IGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA---FIRVVGSEF 229 (245)
Q Consensus 161 v~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~---~~~v~~s~l 229 (245)
++|-+++.+++...+.. .. -..++.++++||||+|||++.+++...+... ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46778888888877742 11 1345779999999999999999988877443 665554443
No 189
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.85 E-value=1.6e-05 Score=78.29 Aligned_cols=56 Identities=36% Similarity=0.520 Sum_probs=46.3
Q ss_pred ccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 149 SQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 149 ~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.....|+..|+++.|.+++++.|..++.. .+.++|+||||||||++|+++|..+..
T Consensus 21 ~~~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 21 SDIEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred eecccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 33456778899999999999988877654 136999999999999999999998743
No 190
>PRK13946 shikimate kinase; Provisional
Probab=97.85 E-value=1.7e-05 Score=66.14 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
++.|+|.|+||||||++++.+|..+|++|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 456999999999999999999999999997666
No 191
>PLN02200 adenylate kinase family protein
Probab=97.85 E-value=1.8e-05 Score=68.92 Aligned_cols=42 Identities=14% Similarity=0.348 Sum_probs=33.7
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHh
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~ 234 (245)
..|.-+++.||||+|||++|+.+|..+|.+ .++.++++.+.+
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~i 82 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRREI 82 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHHH
Confidence 345568999999999999999999999865 477777775443
No 192
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.85 E-value=1.1e-05 Score=63.71 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=27.5
Q ss_pred eeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
+++.||||||||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999998765
No 193
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=1.7e-05 Score=72.03 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=42.7
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|++|+|++.+++.+..++..- ..+..+||+||+|+||+.+|.++|+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998651 235679999999999999999999876
No 194
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=2.6e-05 Score=71.82 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=45.5
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.+..+++++|.+.+++.+..++..- ..+..+||+||+|+|||++|+.+|+.+.+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4457789999999999999988651 24567999999999999999999998854
No 195
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=2.3e-05 Score=74.46 Aligned_cols=42 Identities=33% Similarity=0.504 Sum_probs=36.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcc-----cceeeeechhHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQKYLG 235 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~l~~~~~G 235 (245)
+.++||||+|||||+|++|+++++ +..++.+++.+++..+..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 569999999999999999999965 567889999998877754
No 196
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.78 E-value=1.7e-05 Score=77.89 Aligned_cols=81 Identities=23% Similarity=0.378 Sum_probs=53.5
Q ss_pred cccCCCCCceeccCCcchhhhHHHHHHHhcC----CC--cHHH----------HhhhccC----CC-cceeeecCCCCch
Q 025979 148 LSQSEKPDVTYNDIGGCDIQKQEIREAVELP----LT--HHEL----------YKQIGID----PP-RGVLLYGPPGTGK 206 (245)
Q Consensus 148 ~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~----~~--~~~~----------~~~~g~~----~~-~gvLl~GPPGtGK 206 (245)
+.+.+...-.|.|+.|-+.+-.++.-.+..+ +. ..++ .-..+++ |+ +-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 3344455566778888777776666665422 11 0000 0111222 22 2288999999999
Q ss_pred HHHHHHHHhcccceeeeechhH
Q 025979 207 TMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 207 T~lAkalA~~l~~~~~~v~~s~ 228 (245)
|+||+.+|+++|..++.|+.|+
T Consensus 340 TTLAHViAkqaGYsVvEINASD 361 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASD 361 (877)
T ss_pred hHHHHHHHHhcCceEEEecccc
Confidence 9999999999999999998875
No 197
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.78 E-value=2.5e-05 Score=77.18 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=38.1
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|.+|+|++..+..+.-+...| ...||||+||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 3678999999887776554432 11359999999999999999999887
No 198
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2.2e-05 Score=72.73 Aligned_cols=62 Identities=21% Similarity=0.398 Sum_probs=47.3
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccce-----eeeechhHH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA-----FIRVVGSEF 229 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~-----~~~v~~s~l 229 (245)
+.+.+-++++..+..++...+.. ..|.++++|||||||||.+++-+++++.-. ++.|++-.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC
Confidence 44888899999988886543322 345569999999999999999999988444 777776554
No 199
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.76 E-value=1.7e-05 Score=64.27 Aligned_cols=32 Identities=38% Similarity=0.678 Sum_probs=29.8
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
.++|+.|-||||||++|..||..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 46999999999999999999999999999886
No 200
>PHA02624 large T antigen; Provisional
Probab=97.75 E-value=2.3e-05 Score=76.25 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=32.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
|+...+.+|||||||||||+++.+|++.++...+.|+++
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsP 465 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP 465 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCC
Confidence 444445799999999999999999999996667777644
No 201
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.72 E-value=3.1e-05 Score=74.97 Aligned_cols=63 Identities=24% Similarity=0.340 Sum_probs=51.1
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
.++++++|.+...+++.+.+...- .....|||+|+||||||++|++|.... +.+|+.+++..+
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 567889999998888888876521 233459999999999999999998775 679999998655
No 202
>PRK06547 hypothetical protein; Provisional
Probab=97.70 E-value=2.8e-05 Score=64.53 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=29.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
..+.-|++.||||+|||++|+.+|+.++.+++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34556888999999999999999999988776543
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.69 E-value=3.3e-05 Score=59.86 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=27.8
Q ss_pred cceeeecCCCCchHHHHHHHHhcc--------cceeeeechhHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT--------TAAFIRVVGSEF 229 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l--------~~~~~~v~~s~l 229 (245)
+.++++||||+|||++++.++..+ ..+++.+..+..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 458999999999999999999987 677777765543
No 204
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=3.6e-05 Score=70.16 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=40.3
Q ss_pred eeccCCc-chhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 157 TYNDIGG-CDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 157 ~~~dv~G-l~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|++|.| ++.+++.+...+.. -..+..+|||||+|+|||++|+++|+.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4677877 88889988888754 1355779999999999999999999876
No 205
>PLN02674 adenylate kinase
Probab=97.65 E-value=5.7e-05 Score=66.20 Aligned_cols=40 Identities=20% Similarity=0.508 Sum_probs=33.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~ 233 (245)
++..++|.||||+|||++|+.||..+++++ ++..+++...
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~~ 69 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRAA 69 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHHH
Confidence 446699999999999999999999998655 6777776554
No 206
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.64 E-value=5.5e-05 Score=69.28 Aligned_cols=48 Identities=31% Similarity=0.379 Sum_probs=38.4
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|..|+|++..+..+.-.+..| ...++++.||||+|||++++++++.+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3678999999988876554432 12459999999999999999999877
No 207
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.63 E-value=5e-05 Score=69.54 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=45.0
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcc-eeeecCCCCchHHHHHHHHhccc-ceeeeec
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG-VLLYGPPGTGKTMLAKAVANHTT-AAFIRVV 225 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~g-vLl~GPPGtGKT~lAkalA~~l~-~~~~~v~ 225 (245)
+++.|+++.++++-+++.. ...|+...+. ++|+||+|+|||++++.|-+.+. .+++.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~--------AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKS--------AAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred ccccCcHHHHHHHHHHHHH--------HHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 4799999999998887654 4455665555 67899999999999999988773 3444443
No 208
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.61 E-value=7.7e-05 Score=75.35 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=44.2
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeechh
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGS 227 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~~s 227 (245)
+.+.|-++++++|..++...+. |-.+...++++||||||||++++.+..++ .+.++.|++.
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 5688888888888888764221 22233335699999999999999998766 2567778763
No 209
>PLN02199 shikimate kinase
Probab=97.61 E-value=5.1e-05 Score=68.13 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=35.6
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH-hcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY-LGE 236 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~-~Ge 236 (245)
..+.|+|.|++|+|||++++.+|+.++++| ++...+++.. -|.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~f--IDtD~lIe~~~~G~ 144 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTF--FDCDTLIEQAMNGT 144 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCE--EehHHHHHHHhcCC
Confidence 456799999999999999999999999998 4666777664 354
No 210
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.59 E-value=7.8e-05 Score=61.37 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=30.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhccc---ceeeeechhHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEFVQ 231 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~---~~~~~v~~s~l~~ 231 (245)
++.-++|.||||+|||++|+.++..+. ...+.+++..+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 445689999999999999999999885 2345566655543
No 211
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.58 E-value=8e-05 Score=60.13 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=29.6
Q ss_pred eeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHH
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 231 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~ 231 (245)
+++.|+||+|||++|+.++..+ +...+.+++..+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999998 65666677665543
No 212
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.55 E-value=4.5e-05 Score=58.55 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.7
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
|++.|+||||||++|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 213
>PRK09087 hypothetical protein; Validated
Probab=97.54 E-value=6.1e-05 Score=65.16 Aligned_cols=31 Identities=39% Similarity=0.493 Sum_probs=26.0
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
+.++||||+|||||+|+++++...++.++..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~ 75 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP 75 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH
Confidence 3499999999999999999998877765444
No 214
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.54 E-value=7.2e-05 Score=62.95 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=15.6
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
.+++||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999997555554443
No 215
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.53 E-value=8.5e-05 Score=72.03 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=50.5
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhc-----------ccceeeee
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH-----------TTAAFIRV 224 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~-----------l~~~~~~v 224 (245)
.++++++|.....+.+.+.+... . .....||++|+|||||+++|++|-.. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-------A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-------A----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-------h----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 45788999999888888887641 1 12345999999999999999999765 46799999
Q ss_pred chhHH
Q 025979 225 VGSEF 229 (245)
Q Consensus 225 ~~s~l 229 (245)
+|+.+
T Consensus 285 nCaal 289 (538)
T PRK15424 285 NCGAI 289 (538)
T ss_pred ecccC
Confidence 98765
No 216
>PF13245 AAA_19: Part of AAA domain
Probab=97.53 E-value=9.5e-05 Score=53.19 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=21.8
Q ss_pred eeeecCCCCchH-HHHHHHHhcc------cceeeeechh
Q 025979 196 VLLYGPPGTGKT-MLAKAVANHT------TAAFIRVVGS 227 (245)
Q Consensus 196 vLl~GPPGtGKT-~lAkalA~~l------~~~~~~v~~s 227 (245)
+++.|||||||| +++..++... +..++.+..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 556999999999 5556665555 4456666544
No 217
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.52 E-value=8e-05 Score=74.23 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=49.3
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
..+++++|.....+.+.+.+...- .....||++|+||||||++|++|.... +.+|+.+++..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~ 438 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAM 438 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccC
Confidence 456788898888888877776411 233469999999999999999998754 679999988754
No 218
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.52 E-value=6.8e-05 Score=64.73 Aligned_cols=23 Identities=48% Similarity=0.767 Sum_probs=20.7
Q ss_pred CcceeeecCCCCchHHHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
|..+||||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45599999999999999999985
No 219
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=6e-05 Score=74.08 Aligned_cols=39 Identities=36% Similarity=0.375 Sum_probs=33.3
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc----cceeeeechhHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGSEFVQ 231 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s~l~~ 231 (245)
+..+||+||+|||||.|+++++.+. -+++.+++++.+-.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~ 473 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG 473 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc
Confidence 3559999999999999999999987 57788889888743
No 220
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.49 E-value=0.00011 Score=66.84 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=47.6
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
+++++|.....+.+.+.+.... .....||++|+|||||+++|++|-... +.+|+.+++..+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCC
Confidence 4578888888888888776521 233459999999999999999997554 578999998765
No 221
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00023 Score=66.58 Aligned_cols=43 Identities=26% Similarity=0.547 Sum_probs=36.6
Q ss_pred cceeeecCCCCchHHHHHHHHhcc-----cceeeeechhHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSEFVQKYLGE 236 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~l~~~~~Ge 236 (245)
+-++||||+|.|||+|++|++++. +..++.++.+.+++.++-.
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a 161 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKA 161 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHH
Confidence 338999999999999999999887 5678999999988777643
No 222
>PRK06696 uridine kinase; Validated
Probab=97.46 E-value=0.00013 Score=62.66 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=31.5
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
+.-|.+.|+||+|||++|+.|+..+ |.+++.+++.+|.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3448899999999999999999998 6678877766664
No 223
>PLN02459 probable adenylate kinase
Probab=97.44 E-value=0.00014 Score=64.23 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=29.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
.++|.||||+|||++|+.+|+.++.++ ++..+++-.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdllR~ 66 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLVRE 66 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHHHH
Confidence 488899999999999999999998655 566666543
No 224
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.43 E-value=0.00014 Score=70.01 Aligned_cols=62 Identities=18% Similarity=0.351 Sum_probs=49.7
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
...+++|.....+.+.+.+... ...+..||++|++|||||++|++|-... +.+|+.|+|..+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAAL 249 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccC
Confidence 5667889888888888887651 1234569999999999999999998764 679999998765
No 225
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.42 E-value=9.3e-05 Score=61.64 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.+..+|||||||+|||++|+++|..+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 456799999999999999999999874
No 226
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.42 E-value=0.00054 Score=61.16 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.++|+||+|+|||+++..+|..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999998765
No 227
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.42 E-value=0.00013 Score=70.52 Aligned_cols=63 Identities=24% Similarity=0.414 Sum_probs=50.5
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
.+|++++|.....+.+.+.+... . .....||++|+|||||+++|++|-... +.||+.++|..+
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-------A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l 274 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-------A----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAI 274 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-------h----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccC
Confidence 56788999999888888887641 1 123569999999999999999997653 679999998755
No 228
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.42 E-value=0.00019 Score=58.89 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=33.3
Q ss_pred cchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 163 GCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 163 Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
|++++++.+...+.. -..|..+||+||+|+||+++|+++|..+
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 567777778777754 1356779999999999999999999877
No 229
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.42 E-value=0.00015 Score=71.72 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=49.7
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
..+|+++.|.+....++.+.+.... .....|||+|+|||||+++|++|-... +.+|+.|++..+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~ 387 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLY 387 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCC
Confidence 4568899998888888777765411 123449999999999999999998765 579999997654
No 230
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.40 E-value=0.00016 Score=50.70 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.2
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999984
No 231
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00016 Score=72.32 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=61.8
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeec
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVV 225 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~ 225 (245)
-..+.|+|-++.+.++.+.+.+. ..++-+|.|+||||||.++..+|... +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 44678999999888888887763 23457899999999999999999765 67899999
Q ss_pred hhHHH--HHHhcccccccccc
Q 025979 226 GSEFV--QKYLGEVWLKHKQI 244 (245)
Q Consensus 226 ~s~l~--~~~~Ge~~~~vr~i 244 (245)
++.++ .+|-|+-|..++.+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~v 254 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAV 254 (786)
T ss_pred HHHHhccccccCcHHHHHHHH
Confidence 99998 78889887776653
No 232
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.38 E-value=0.00011 Score=61.92 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=33.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc-cceeeeechhHHHHHH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l-~~~~~~v~~s~l~~~~ 233 (245)
..|.-+++.||||+|||+++..+...+ +..++.|+..++...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 456779999999999999999999988 7888999988876443
No 233
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.35 E-value=0.00025 Score=66.26 Aligned_cols=66 Identities=27% Similarity=0.435 Sum_probs=51.4
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhc----ccceeeeechhHHHH
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH----TTAAFIRVVGSEFVQ 231 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~----l~~~~~~v~~s~l~~ 231 (245)
..+.+++|-+...+++++.+.. |. .....||++|++||||+++|++|... .+.||+.++|..|.+
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 4567899999888888888765 11 12244999999999999999988743 367999999998864
Q ss_pred H
Q 025979 232 K 232 (245)
Q Consensus 232 ~ 232 (245)
.
T Consensus 144 n 144 (403)
T COG1221 144 N 144 (403)
T ss_pred C
Confidence 4
No 234
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.35 E-value=0.00023 Score=64.93 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=40.9
Q ss_pred CcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 162 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 162 ~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
+|.....+.+.+.+... ......|||+|+|||||+++|++|-... +.+|+.|++..+
T Consensus 2 iG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~ 61 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAAL 61 (329)
T ss_pred CcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCC
Confidence 45555666666665441 1233559999999999999999986544 579999998654
No 235
>PF13173 AAA_14: AAA domain
Probab=97.35 E-value=0.00016 Score=56.56 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=28.8
Q ss_pred cceeeecCCCCchHHHHHHHHhccc--ceeeeechhHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEF 229 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~s~l 229 (245)
+-++++||.|||||++++.++..+. ..++.++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 4488999999999999999998875 66666665543
No 236
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.34 E-value=0.00018 Score=60.76 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=29.6
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSE 228 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~ 228 (245)
|+....-++++||||||||++|..++... +...+.++..+
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44444449999999999999999888644 55666666654
No 237
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00017 Score=68.93 Aligned_cols=39 Identities=41% Similarity=0.699 Sum_probs=33.8
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
+-..+||+||||+|||.||-.+|...+.||+++-.++=+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m 575 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM 575 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc
Confidence 344599999999999999999999999999998766543
No 238
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.34 E-value=0.00011 Score=58.39 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=36.5
Q ss_pred cchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc---ceeeeechhHH
Q 025979 163 GCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEF 229 (245)
Q Consensus 163 Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~---~~~~~v~~s~l 229 (245)
|-....+++++.+... . .....||++|+|||||+++|++|....+ .+|+.+++..+
T Consensus 2 G~S~~~~~l~~~l~~~-------a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~ 60 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL-------A----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASL 60 (138)
T ss_dssp -SCHHHHHHHHHHHHH-------H----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCT
T ss_pred CCCHHHHHHHHHHHHH-------h----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhC
Confidence 4445556666665431 1 2234599999999999999999998764 46776665543
No 239
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.32 E-value=0.00024 Score=68.72 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=49.6
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
...+|++++|.....+.+.+.+... . .....||++|++||||+++|+++-... +.+|+.++|+.+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-------A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-------A----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-------h----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4568889999998777777666431 1 123449999999999999999985443 5789999987653
No 240
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.32 E-value=0.00019 Score=57.29 Aligned_cols=30 Identities=33% Similarity=0.337 Sum_probs=25.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccce
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA 220 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~ 220 (245)
.+..-++|.|+.|+|||+++|.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344558899999999999999999999765
No 241
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.31 E-value=0.00016 Score=63.22 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.9
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
-++|+||||+|||++++.+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 388999999999999999999875
No 242
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.31 E-value=0.00023 Score=58.27 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=33.0
Q ss_pred ceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHH
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKY 233 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~ 233 (245)
-|.|.|.||+|||+||+++...+ +.+.+.+++..+...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 37899999999999999999987 7889999998886543
No 243
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.28 E-value=0.00022 Score=61.98 Aligned_cols=40 Identities=33% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
....|-.++||+|||||.+.|.+|+.+|.+++.+++++-+
T Consensus 30 ~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~ 69 (231)
T PF12774_consen 30 SLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM 69 (231)
T ss_dssp CTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS
T ss_pred ccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc
Confidence 3446778999999999999999999999999999887643
No 244
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.27 E-value=0.00027 Score=61.33 Aligned_cols=39 Identities=33% Similarity=0.397 Sum_probs=28.6
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhc---ccceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANH---TTAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~---l~~~~~~v~~s 227 (245)
|+.++..+|++||||||||++|-.++.+ .|-+.+.++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 5666677999999999999999876543 25555555533
No 245
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.27 E-value=0.00024 Score=60.45 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=29.3
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
|+....-++++||||||||++|..+|... +.+.+.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 44444559999999999999999998765 4566666543
No 246
>PHA02774 E1; Provisional
Probab=97.22 E-value=0.00028 Score=68.52 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=24.5
Q ss_pred cceeeecCCCCchHHHHHHHHhccccee
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAF 221 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~ 221 (245)
++++||||||||||++|-+|++.++...
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~v 462 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKV 462 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4699999999999999999999985433
No 247
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.21 E-value=0.00071 Score=54.79 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=33.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechh-HHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS-EFVQKYL 234 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s-~l~~~~~ 234 (245)
..+.+||.+|+|+|||.++-.++..+..+++.+.++ .+.+++.
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWY 67 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHH
Confidence 356799999999999999998777776577777655 6666554
No 248
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.20 E-value=0.00035 Score=59.79 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=29.8
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
|+....-++++||||+|||++|..+|... +.+.+.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44444458999999999999999998744 5666666665
No 249
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00016 Score=66.53 Aligned_cols=30 Identities=43% Similarity=0.744 Sum_probs=24.7
Q ss_pred hccCCCcc--eeeecCCCCchHHHHHHHHhcc
Q 025979 188 IGIDPPRG--VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 188 ~g~~~~~g--vLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+| +.|.||+|||||++.|.||..-
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566 7799999999999999999865
No 250
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.19 E-value=0.00031 Score=60.16 Aligned_cols=38 Identities=37% Similarity=0.462 Sum_probs=27.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~ 226 (245)
|+..+.-+|+.||||||||++|..++... |-+.+.++.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 56666669999999999999998766432 556655654
No 251
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.19 E-value=0.00041 Score=59.81 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=29.3
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
|+..+..++++||||||||++|..++... +.+.+.++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 55556669999999999999999997543 5566666543
No 252
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.17 E-value=0.00042 Score=59.39 Aligned_cols=38 Identities=34% Similarity=0.373 Sum_probs=28.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
|+.+...++++||||||||+++..++... +.+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56666669999999999999999876432 445555554
No 253
>PLN02165 adenylate isopentenyltransferase
Probab=97.17 E-value=0.00031 Score=64.09 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=27.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
-++|.||+|+|||+||..||..++..++..+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 4889999999999999999999988776654
No 254
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.16 E-value=0.00029 Score=67.79 Aligned_cols=46 Identities=37% Similarity=0.618 Sum_probs=35.7
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..|+|+.|...+++.+.-.+ .....++|+||||||||++|++++..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcc
Confidence 47889999887766555333 23356999999999999999999864
No 255
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.00032 Score=57.40 Aligned_cols=37 Identities=27% Similarity=0.560 Sum_probs=30.1
Q ss_pred CCCcc-eeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 191 DPPRG-VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 191 ~~~~g-vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
.+.++ +++.|+.|||||+++++++++++++|+ ++.+|
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~--dgDd~ 46 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGLKFI--DGDDL 46 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhCCccc--ccccC
Confidence 34554 778899999999999999999999995 44443
No 256
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.13 E-value=0.00033 Score=61.74 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=27.2
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
|+.+..-++++||||||||++|-.+|... |.+.+.++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45555559999999999999999876542 445555543
No 257
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.13 E-value=0.00058 Score=64.00 Aligned_cols=43 Identities=30% Similarity=0.388 Sum_probs=35.8
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 235 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~G 235 (245)
.+.|++.|++|||||+|+++||...|..++.--+-+++...+|
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~ 261 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLG 261 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhc
Confidence 3559999999999999999999999988877667777765554
No 258
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.12 E-value=0.00047 Score=62.75 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=29.7
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
|+...+-++++||||||||+||-.++... +.+.+.++..+-
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~ 94 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 94 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence 34444558999999999999988766544 566667766543
No 259
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.11 E-value=0.00041 Score=60.89 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=29.5
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
|+...+.+|++|+||||||+++...+... |.+.+.|+.+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 45566669999999999999998877654 5666666533
No 260
>PRK05973 replicative DNA helicase; Provisional
Probab=97.10 E-value=0.00043 Score=60.42 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=27.4
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeec
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVV 225 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~ 225 (245)
|+.+..-+++.|+||+|||++|-.+|... |.+.+.++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 55566669999999999999888776644 55554454
No 261
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.00026 Score=61.89 Aligned_cols=32 Identities=31% Similarity=0.640 Sum_probs=26.5
Q ss_pred hhhccCCCcc--eeeecCCCCchHHHHHHHHhcc
Q 025979 186 KQIGIDPPRG--VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 186 ~~~g~~~~~g--vLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+.++..+| +.+.||+|||||+|-+.||.-.
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4445555666 8999999999999999999876
No 262
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.09 E-value=0.00054 Score=57.72 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=31.2
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 232 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~ 232 (245)
+.-+.|.|+||+|||++|+.|+..+ +...+.+++..+...
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~ 66 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG 66 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence 3448899999999999999999977 445667777665543
No 263
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.09 E-value=0.00053 Score=72.17 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=41.8
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
...+++++|.+...+++...+.. +....+-+-++||+|+|||+||+++++.+..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 34567899999988888877643 1223455889999999999999999887643
No 264
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.09 E-value=0.00045 Score=65.40 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=28.4
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
.+|..++|+||||+|||+++..+|..+ +..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 356779999999999999999999876 4444445443
No 265
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.08 E-value=0.00064 Score=61.96 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=36.5
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~ 234 (245)
+.++|.|+||||||+|++.++..++.+++.-.+.+++....
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~ 203 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKL 203 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhc
Confidence 56999999999999999999999999998888888886664
No 266
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.08 E-value=0.00059 Score=59.12 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=26.9
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHh-cc--cceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVAN-HT--TAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~-~l--~~~~~~v~~s 227 (245)
|+.+..-++++||||||||++|..++. .+ +...+.++..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 355555699999999999999755444 32 5556666543
No 267
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.07 E-value=0.00084 Score=56.69 Aligned_cols=34 Identities=41% Similarity=0.530 Sum_probs=25.0
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
+-+++.||||||||++.+.++..+ +..++-+.++
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 447788999999999999988766 4566666544
No 268
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.06 E-value=0.00048 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.5
Q ss_pred eeeecCCCCchHHHHHHHHhccc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+++.||+|+|||++++.++....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999998753
No 269
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.05 E-value=0.00079 Score=55.82 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 231 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~ 231 (245)
++.-+++.|+||+|||++|++++..+ +...+.+++..+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 44558899999999999999999987 34456677766654
No 270
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.03 E-value=0.00033 Score=63.29 Aligned_cols=55 Identities=24% Similarity=0.194 Sum_probs=41.5
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+.-...|+++..+.+..+.+++..+ .-...|||||||||||....+.|..+-.
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~ 88 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYS 88 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcC
Confidence 344456678888888888888775431 1126999999999999999999987744
No 271
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.03 E-value=0.0003 Score=62.06 Aligned_cols=46 Identities=24% Similarity=0.487 Sum_probs=34.0
Q ss_pred hhhccCCCcc--eeeecCCCCchHHHHHHHHhccc--ceeeeechhHHHH
Q 025979 186 KQIGIDPPRG--VLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEFVQ 231 (245)
Q Consensus 186 ~~~g~~~~~g--vLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~s~l~~ 231 (245)
+.+.++.+.| +.+.||.|||||+|.|++++.+. .--+.+++.++.+
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~ 68 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS 68 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence 3344444555 88999999999999999999885 3356677766654
No 272
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.00052 Score=62.60 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.8
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+.++||+||+|+|||++|+++|..+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 4567899999999999999999998863
No 273
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.02 E-value=0.00061 Score=57.26 Aligned_cols=26 Identities=50% Similarity=0.865 Sum_probs=23.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+...++++||.|+|||++++.+.+.+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 34669999999999999999999988
No 274
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.02 E-value=0.00067 Score=64.44 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=32.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccce-eeeechh-HHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAA-FIRVVGS-EFVQKYL 234 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~-~~~v~~s-~l~~~~~ 234 (245)
.|.-++++|+||||||++|..+|..+++. +++.|.- +.+-.++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i 298 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMV 298 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhc
Confidence 46679999999999999999999999986 5555542 4343333
No 275
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.01 E-value=0.00094 Score=59.42 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=26.8
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
.+++-++|+||||+|||+++..+|..+ +..+.-+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 345668899999999999999888766 444444443
No 276
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.00043 Score=63.20 Aligned_cols=28 Identities=39% Similarity=0.592 Sum_probs=24.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.+.++||+||+|+|||++|+++|+.+.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 4677999999999999999999998744
No 277
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.00 E-value=0.00065 Score=58.23 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=29.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---------cceeeeechhH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVGSE 228 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---------~~~~~~v~~s~ 228 (245)
|+....-+.++||||||||++|..+|... +...+.++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 45555558999999999999999997442 25666666543
No 278
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.99 E-value=0.00074 Score=51.84 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=21.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHH
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVA 214 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA 214 (245)
+.+...++|.||+|+|||+|++++.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3455669999999999999999987
No 279
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.99 E-value=0.00071 Score=65.01 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=27.0
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
-+||.||+|||||+..+.++.++|..+..-+
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3788999999999999999999987776554
No 280
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.95 E-value=0.00097 Score=66.07 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=28.9
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeec-----hhHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVV-----GSEFVQKYL 234 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~-----~s~l~~~~~ 234 (245)
..++++||||||||+++.++...+ |..++.++ ...+.++..
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHH
Confidence 348899999999999888777654 55666666 334555544
No 281
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.95 E-value=0.00097 Score=60.65 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=26.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
.+.-++|+||||+|||+++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34558899999999999999999876 334444443
No 282
>PRK04328 hypothetical protein; Provisional
Probab=96.93 E-value=0.00089 Score=58.64 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=26.9
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhc-c--cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANH-T--TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~-l--~~~~~~v~~ 226 (245)
|+.++..+|++||||||||.+|-.++.. + |-+.+.++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4555566999999999999998876543 2 445555543
No 283
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.91 E-value=0.00091 Score=58.77 Aligned_cols=25 Identities=44% Similarity=0.517 Sum_probs=22.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..+-+.++|++|+|||+||+.+++.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CeEEEEEEcCCcCCcceeeeecccc
Confidence 3455889999999999999999987
No 284
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.90 E-value=0.001 Score=64.14 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.5
Q ss_pred ceeeecCCCCchHHHHHHHHhcccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.+||+|+||||||.+|+++++....
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r 262 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPR 262 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCc
Confidence 4999999999999999999987743
No 285
>PRK07667 uridine kinase; Provisional
Probab=96.89 E-value=0.00075 Score=56.73 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=27.5
Q ss_pred eeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
|.+.|+||+|||++|+.|+..+ +.+...++..++.
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 6789999999999999999987 3455556665543
No 286
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.88 E-value=0.00086 Score=57.73 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=28.9
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeec
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVV 225 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~ 225 (245)
|+.+..-+++.||||+|||+++..+|... +.+++.++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 66666669999999999999998887654 56666665
No 287
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.87 E-value=0.0011 Score=64.95 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=32.3
Q ss_pred ceeeecCCCCchHHHHHHHHhcccc----eeeeechhHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTA----AFIRVVGSEFVQKYLG 235 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~----~~~~v~~s~l~~~~~G 235 (245)
-++|+|+||+|||++|++||..++. +++.+++..+.....|
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g 438 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS 438 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC
Confidence 3889999999999999999999875 4566777766544444
No 288
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.87 E-value=0.00095 Score=60.87 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=28.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhH
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSE 228 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~ 228 (245)
+...+-+.+|||||||||+||-.++... +...+.++..+
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 4444448899999999999999877543 56667776543
No 289
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.87 E-value=0.0013 Score=49.98 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=25.6
Q ss_pred cceeeecCCCCchHHHHHHHHhccc-----ceeeeechhH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGSE 228 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~-----~~~~~v~~s~ 228 (245)
++++++||||+|||+++-.++..+. ..++.+.++.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~ 40 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTR 40 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcH
Confidence 3689999999999998888777663 4455554443
No 290
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.85 E-value=0.001 Score=56.70 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=29.2
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---c------ceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---T------AAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~------~~~~~v~~s 227 (245)
|+....-+.++||||+|||++|..+|... + ...+.++..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 45555558999999999999999988653 3 556666654
No 291
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.85 E-value=0.00058 Score=61.49 Aligned_cols=40 Identities=35% Similarity=0.610 Sum_probs=35.8
Q ss_pred CCcceeeecCCCCchHHHHHHHHhccc--ceeeeechhHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEFVQ 231 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~s~l~~ 231 (245)
..+.+|+.|+||||||.+|-.+|+.+| .||..+++|++.+
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S 106 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS 106 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee
Confidence 457799999999999999999999995 6999999999864
No 292
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.84 E-value=0.00082 Score=57.11 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.4
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
++-++|.||||||||+|+++|+..
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 344889999999999999999753
No 293
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.84 E-value=0.00087 Score=55.91 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.....+++.||+|+|||++.++++..+
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445669999999999999999999876
No 294
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.82 E-value=0.0013 Score=56.18 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=28.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
|+.+..-+++.||||+|||.+|..++... +.+.+.++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45555559999999999999998887542 5555555543
No 295
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.82 E-value=0.0016 Score=62.55 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=52.5
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
...+|++++|-..+..++.+.+.. .-..+..||++|-+||||.++|++|=+.. +.||+.++|..+-
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 346789999998887777776654 12345669999999999999999997765 7899999987653
No 296
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.81 E-value=0.00078 Score=53.01 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccccee
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 221 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~ 221 (245)
++..-|+|+|+=|+|||+++|++++.+|..-
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 4445599999999999999999999997654
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.00084 Score=62.32 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+..++|+||||||||+++..||..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34559999999999999999999764
No 298
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.80 E-value=0.0011 Score=59.90 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=27.3
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccccee
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 221 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~ 221 (245)
..|--+++.||||||||++|..||..++.+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3456699999999999999999999998873
No 299
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.80 E-value=0.0012 Score=62.64 Aligned_cols=43 Identities=35% Similarity=0.475 Sum_probs=33.1
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 231 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~ 231 (245)
|+.+..-++++||||+|||+++..+|... +.+.+++++.+-.+
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~ 121 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESAS 121 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHH
Confidence 45555559999999999999999998765 56777887765443
No 300
>PLN02840 tRNA dimethylallyltransferase
Probab=96.79 E-value=0.0011 Score=62.34 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=28.6
Q ss_pred eeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+++.||+|+|||++|..||..++..++.++.-
T Consensus 24 i~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 88999999999999999999999888777653
No 301
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0015 Score=54.59 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=33.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 231 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~ 231 (245)
+.-+.|.|.+|+|||++|.+++..| |...+.+||..+-.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 3447799999999999999999987 88999999988753
No 302
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.78 E-value=0.0012 Score=59.34 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=28.9
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---------cceeeeechhH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVGSE 228 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---------~~~~~~v~~s~ 228 (245)
|+..+.-++++||||||||.+|-.+|... +...+.|+..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 44444448899999999999999887552 23666676544
No 303
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.00061 Score=62.34 Aligned_cols=28 Identities=39% Similarity=0.714 Sum_probs=23.1
Q ss_pred cCCCcc--eeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRG--VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~g--vLl~GPPGtGKT~lAkalA~~l 217 (245)
+....| +.|.||+|||||++.|.||.-.
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 333444 8899999999999999999865
No 304
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.77 E-value=0.0015 Score=57.50 Aligned_cols=55 Identities=25% Similarity=0.426 Sum_probs=37.2
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
....++++++-.....+.+.+++... +.....+++.||+|+|||++.+++...+.
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred cccccHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhcc
Confidence 34456667665555555666555441 12345699999999999999999998873
No 305
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.76 E-value=0.0013 Score=62.97 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=29.2
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhc----ccceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANH----TTAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~----l~~~~~~v~~s 227 (245)
|+.+++.+|+.||||||||++|..++.+ .|-+.+.|+..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5666677999999999999999987532 24566666544
No 306
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0015 Score=61.09 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|+-++|+||+|+|||+++.-+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35569999999999999999898754
No 307
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.72 E-value=0.0022 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+++++.||+|+|||++++++.+.+
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999999876
No 308
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.72 E-value=0.00089 Score=52.36 Aligned_cols=29 Identities=41% Similarity=0.602 Sum_probs=24.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.+..-+.++||+|+|||+|.++++....
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EcCCCEEEEEccCCCccccceeeeccccc
Confidence 34555689999999999999999999873
No 309
>PRK10536 hypothetical protein; Provisional
Probab=96.71 E-value=0.0014 Score=57.87 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-+++.||+|||||+||.++|-.
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4888999999999999999984
No 310
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.71 E-value=0.0013 Score=62.06 Aligned_cols=25 Identities=40% Similarity=0.784 Sum_probs=23.2
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..|+|+.||||.|||++|+|+|..+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 3789999999999999999999877
No 311
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.0011 Score=60.93 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+.++||+||+|+||+.+|+++|..+.+
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46778999999999999999999988754
No 312
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0031 Score=59.39 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=21.8
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++-++|.||+|||||+++..+|...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34458899999999999999999754
No 313
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.70 E-value=0.0015 Score=60.45 Aligned_cols=30 Identities=40% Similarity=0.744 Sum_probs=26.5
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+|+|+.||||+|+|||+|.-...+.+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 457999999999999999999998887744
No 314
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.70 E-value=0.0024 Score=59.33 Aligned_cols=49 Identities=33% Similarity=0.460 Sum_probs=34.3
Q ss_pred cHHHHhhh--ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 181 HHELYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 181 ~~~~~~~~--g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
.+++.+-+ |+.+..-++++||||+|||+++..+|... +.+.+.+++.+-
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 33444444 45555559999999999999999988765 356777776543
No 315
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.69 E-value=0.0013 Score=64.71 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=29.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcccc--eeeeechh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTA--AFIRVVGS 227 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~--~~~~v~~s 227 (245)
.+|||.|+||||||++|++++..+.. +|+++..+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~ 52 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLG 52 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc
Confidence 35999999999999999999998754 68888753
No 316
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.68 E-value=0.0015 Score=57.23 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.6
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~ 226 (245)
|+.+..-+++.||||+|||+++..+|..+ +.+++.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45565668999999999999999887654 556555554
No 317
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.67 E-value=0.002 Score=58.77 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=23.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+++|+.||+|+|||++.++++...
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999875
No 318
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0021 Score=60.15 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++-++|+||+|+|||+++..||..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 34669999999999999999999766
No 319
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.64 E-value=0.0012 Score=62.18 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
....++++.||||||||++|.+++..
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 45567999999999999999998877
No 320
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.002 Score=60.01 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=34.9
Q ss_pred chhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 164 CDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 164 l~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+.+...+.+.+...+..+..+ .+.+++-++|+||+|||||+++..+|..+
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566667776665433222211 23456669999999999999999998765
No 321
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.63 E-value=0.0032 Score=55.76 Aligned_cols=47 Identities=26% Similarity=0.426 Sum_probs=34.2
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcc-eeeecCCCCchHHHHHHHHhcc
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG-VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~g-vLl~GPPGtGKT~lAkalA~~l 217 (245)
.++++++-...+.+.+.+++.. ++| +++.||+|+|||++.+++...+
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3456776555666666655543 244 8999999999999999998766
No 322
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.62 E-value=0.0018 Score=58.59 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=28.7
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---------cceeeeechhH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVGSE 228 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---------~~~~~~v~~s~ 228 (245)
|+..+.-++++||||||||.+|-.+|... +...+.|+..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 45555558899999999999999888553 33566666443
No 323
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.62 E-value=0.0039 Score=56.79 Aligned_cols=25 Identities=40% Similarity=0.683 Sum_probs=22.6
Q ss_pred CCcceeeecCCCCchHHHHHHHHhc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..+++++.||||+|||+++++++..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999976
No 324
>PTZ00202 tuzin; Provisional
Probab=96.61 E-value=0.004 Score=59.08 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=44.7
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeech
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 226 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~ 226 (245)
.+..|-+....++...+.. .....++-+.|.||+|||||++++.++..++.+.+.++.
T Consensus 262 ~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNp 319 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDV 319 (550)
T ss_pred cCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECC
Confidence 4788889888888887753 122344557899999999999999999998876665554
No 325
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.58 E-value=0.0014 Score=55.62 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+..+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3444558999999999999999999876
No 326
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.58 E-value=0.0016 Score=52.91 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.7
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.+|+||.||+|+|||++|.++...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999999988775
No 327
>PRK09354 recA recombinase A; Provisional
Probab=96.57 E-value=0.0022 Score=59.02 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=28.4
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhH
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSE 228 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~ 228 (245)
+...+-+++|||||||||+||-.++... +...+.|+..+
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 4444448899999999999998766443 66667777554
No 328
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.57 E-value=0.0015 Score=60.06 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=26.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.+...+++|+.||+|+|||+++++++..+.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 455667899999999999999999998873
No 329
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.56 E-value=0.0016 Score=52.58 Aligned_cols=24 Identities=42% Similarity=0.803 Sum_probs=21.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++|.||+|||||+|+++|-..-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 458999999999999999998644
No 330
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.56 E-value=0.0019 Score=62.33 Aligned_cols=29 Identities=28% Similarity=0.537 Sum_probs=25.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceee
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFI 222 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~ 222 (245)
.-+.+.||+|||||++|+.||+.++..++
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l~~~~~ 313 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKLGLLYL 313 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 34889999999999999999999986553
No 331
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.0026 Score=57.87 Aligned_cols=26 Identities=42% Similarity=0.704 Sum_probs=23.6
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|.++||+||+|+||+++|.++|..+
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHH
Confidence 55679999999999999999999876
No 332
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.55 E-value=0.0027 Score=60.17 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=44.3
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
+.++.|-......+.+.+.. . ......+++.|++|||||++|+++.... +.+|+.++++.+
T Consensus 137 ~~~lig~s~~~~~l~~~~~~----------~-~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~ 200 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR----------L-SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI 200 (469)
T ss_pred cccceecCHHHHHHHHHHHH----------H-hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC
Confidence 34567766666666555542 0 1223459999999999999999998876 578999998765
No 333
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.54 E-value=0.002 Score=56.63 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=24.1
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.+..++++||+|||||++++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4455999999999999999999988754
No 334
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.53 E-value=0.0019 Score=52.37 Aligned_cols=43 Identities=28% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechh-HHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS-EFVQKYL 234 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s-~l~~~~~ 234 (245)
++.-|+|.|+=|.|||+++|++++.++..-...|++ .+++.|.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~ 67 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYE 67 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeeehhhc
Confidence 344489999999999999999999998643333333 4556663
No 335
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.52 E-value=0.0023 Score=44.32 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+|+||+|+|||++..|+.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999986544
No 336
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.51 E-value=0.0015 Score=58.19 Aligned_cols=26 Identities=46% Similarity=0.618 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+.+||+||+|||||.+++..-+.+
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred cCCcEEEECCCCCchhHHHHhhhccC
Confidence 45679999999999999998877665
No 337
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.51 E-value=0.0026 Score=59.15 Aligned_cols=36 Identities=31% Similarity=0.630 Sum_probs=29.9
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
|+...+.++|||||+||||+++-+|-+.++..++..
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf 293 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISF 293 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-G
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEe
Confidence 555556699999999999999999999998777654
No 338
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.51 E-value=0.0028 Score=57.02 Aligned_cols=65 Identities=23% Similarity=0.360 Sum_probs=44.5
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcc--eeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhc
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG--VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 235 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~g--vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~G 235 (245)
.+.|+.-+++.|-..+...+.++ .|.|- +-|||+|||||...++.||+.+-.. -..|.++.+|++
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~--------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~---Gl~S~~V~~fva 149 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP--------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRG---GLRSPFVHHFVA 149 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC--------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhc---cccchhHHHhhh
Confidence 47888888888888876544332 12233 5599999999999999999976221 134556666654
No 339
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.50 E-value=0.002 Score=61.78 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=31.4
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 232 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~ 232 (245)
|+.++.-+|+.||||||||+++-.++... |-+.+.++..+-.+.
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~ 305 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQ 305 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHH
Confidence 45555559999999999999998888754 556666665544333
No 340
>PRK13764 ATPase; Provisional
Probab=96.49 E-value=0.0018 Score=63.54 Aligned_cols=27 Identities=37% Similarity=0.722 Sum_probs=24.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+++|++||||+|||+++++++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457799999999999999999998874
No 341
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.49 E-value=0.0031 Score=60.21 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=41.0
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcc-eeeecCCCCchHHHHHHHHhcccceee
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG-VLLYGPPGTGKTMLAKAVANHTTAAFI 222 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~g-vLl~GPPGtGKT~lAkalA~~l~~~~~ 222 (245)
..++++++......+.+.+.+.. |.| +|+.||+|+|||++..++-+.++.+..
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~ 287 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPER 287 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCc
Confidence 45667777777777777777654 466 778899999999999999988865544
No 342
>PRK14974 cell division protein FtsY; Provisional
Probab=96.48 E-value=0.0022 Score=58.78 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|.-++|.||||+|||+++..+|..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35569999999999999888888765
No 343
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0019 Score=55.40 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.|.||+|+|||+|.++||..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455559999999999999999999876
No 344
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.45 E-value=0.002 Score=54.43 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.++++...
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455559999999999999999999875
No 345
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.45 E-value=0.0025 Score=60.23 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc-----cceeeeechhH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSE 228 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~ 228 (245)
.++.++|+||+|||||+++..+|..+ +..+..++...
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 34568999999999999888887644 23444455444
No 346
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.44 E-value=0.003 Score=60.23 Aligned_cols=50 Identities=34% Similarity=0.459 Sum_probs=34.9
Q ss_pred cHHHHhhh--ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 181 HHELYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 181 ~~~~~~~~--g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
-+++.+-+ |+.+..-++++|+||+|||+++..+|... +.+.+++++.+-.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~ 134 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL 134 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH
Confidence 34444434 45555559999999999999999987755 3467777765544
No 347
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.0037 Score=57.09 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.+.++||+||+|+||+++|+++|..+-
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 457899999999999999999998773
No 348
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.43 E-value=0.0022 Score=53.41 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++-.+++.||+||||+++.|++|+-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4455559999999999999999999865
No 349
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.42 E-value=0.0021 Score=54.39 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|+++|+..+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999875
No 350
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.42 E-value=0.0021 Score=55.10 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|+++|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455559999999999999999999876
No 351
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.42 E-value=0.0025 Score=48.35 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.9
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
|++.|++|+|||+|.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998655
No 352
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.42 E-value=0.0022 Score=54.16 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.++..+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444558899999999999999999876
No 353
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0023 Score=54.02 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.5
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558899999999999999999865
No 354
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.41 E-value=0.0026 Score=60.10 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=27.7
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
+|.-++|+||+|+|||+++..+|..+ |.....+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 45569999999999999999999766 5555555543
No 355
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.40 E-value=0.0022 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.++|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344458999999999999999999865
No 356
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.0038 Score=57.16 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+.++||+||+|+||+++|.++|..+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999877
No 357
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0022 Score=55.21 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|+++|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 444458999999999999999999875
No 358
>PLN02748 tRNA dimethylallyltransferase
Probab=96.39 E-value=0.003 Score=60.30 Aligned_cols=32 Identities=34% Similarity=0.544 Sum_probs=28.1
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeeeech
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 226 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~ 226 (245)
-+++.||+|||||.||..||..++..++..|.
T Consensus 24 ~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 24 VVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 48899999999999999999999988776654
No 359
>PRK10867 signal recognition particle protein; Provisional
Probab=96.39 E-value=0.0029 Score=59.88 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=27.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc----cceeeeechh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGS 227 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s 227 (245)
+|.-++|+||||+|||+++.-+|..+ |..+..+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 46679999999999999877777654 4555556554
No 360
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0013 Score=56.70 Aligned_cols=43 Identities=30% Similarity=0.590 Sum_probs=30.3
Q ss_pred hhhccCCCcc--eeeecCCCCchHHHHHHHHhcc--cceeeeechhH
Q 025979 186 KQIGIDPPRG--VLLYGPPGTGKTMLAKAVANHT--TAAFIRVVGSE 228 (245)
Q Consensus 186 ~~~g~~~~~g--vLl~GPPGtGKT~lAkalA~~l--~~~~~~v~~s~ 228 (245)
+.+.+...+| +.++||+|+|||++.|+|..-- ..--+.+++..
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~ 65 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGED 65 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEe
Confidence 3344445555 8999999999999999997633 44456666643
No 361
>PRK10646 ADP-binding protein; Provisional
Probab=96.38 E-value=0.0028 Score=51.70 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=25.7
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccce
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA 220 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~ 220 (245)
.++.-|+|.|+=|+|||+++|++++.+|..
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 344458999999999999999999999764
No 362
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.38 E-value=0.0042 Score=59.11 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=50.8
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
..+.+++|.....+++++.+... ....-.||++|.+||||.++|++|=... +.||+.|+|..+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip 204 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP 204 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC
Confidence 45678999999999999888651 1233459999999999999999997766 5699999987553
No 363
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.37 E-value=0.0022 Score=62.71 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=25.8
Q ss_pred hccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 188 IGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 188 ~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++++..+|+.||+|||||++-||||+-.
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345667779999999999999999999865
No 364
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.36 E-value=0.0023 Score=52.73 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444558999999999999999999876
No 365
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.36 E-value=0.0031 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.7
Q ss_pred cceeeecCCCCchHHHHHHHHhccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+++.||+|+|||++.+++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3488999999999999999988663
No 366
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.35 E-value=0.0028 Score=57.22 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=25.9
Q ss_pred hccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 188 IGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 188 ~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+-+.....+++.||+|+|||+++++++..+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 345566789999999999999999999877
No 367
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.35 E-value=0.0024 Score=53.08 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+...
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999865
No 368
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.35 E-value=0.0023 Score=53.74 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|.+.++..+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444558999999999999999999876
No 369
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.34 E-value=0.0027 Score=53.69 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.|.||+|+|||+|.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999875
No 370
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.33 E-value=0.0026 Score=58.26 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=25.2
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+...+++|+.||+|+|||++.+++.....
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 44567799999999999999999998773
No 371
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.33 E-value=0.0025 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.3
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558999999999999999999876
No 372
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.33 E-value=0.003 Score=52.87 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455559999999999999999999875
No 373
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.32 E-value=0.0024 Score=54.32 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444559999999999999999999875
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.32 E-value=0.0019 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.0
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
-++|+||+|+|||++.++++..++
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999987653
No 375
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.31 E-value=0.0033 Score=57.09 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=28.1
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhc---------ccceeeeechhH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANH---------TTAAFIRVVGSE 228 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~---------l~~~~~~v~~s~ 228 (245)
|+....-..++||||||||.+|..+|-. .+...++|+..+
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 4555455889999999999999877631 245666666443
No 376
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0027 Score=52.06 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455559999999999999999999876
No 377
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.30 E-value=0.0027 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444558999999999999999999876
No 378
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.30 E-value=0.0029 Score=53.43 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344448899999999999999999875
No 379
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.30 E-value=0.0026 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+..+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455558899999999999999999875
No 380
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.29 E-value=0.0033 Score=60.93 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=25.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
+.=|+|+|+||+|||++|+.++...+...++.
T Consensus 369 p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~ 400 (526)
T TIGR01663 369 CEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNA 400 (526)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHcCCeEECc
Confidence 34499999999999999999999877654433
No 381
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0029 Score=54.44 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|+++|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999876
No 382
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.29 E-value=0.0027 Score=50.84 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|.++++...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4455568999999999999999999876
No 383
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.28 E-value=0.0047 Score=58.08 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=43.6
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
.++.|.....+.+.+.+.. + ......++++|++||||+++|+++-... +.+|+.+++..+.
T Consensus 139 ~~lig~s~~~~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~ 202 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEK----------I-APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP 202 (445)
T ss_pred cceeecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC
Confidence 4566666666666665532 1 1233559999999999999999997655 5789999877653
No 384
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.28 E-value=0.0027 Score=59.33 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.6
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..|++||||||||+|++.|++...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Confidence 399999999999999999998763
No 385
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0029 Score=52.26 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|+++++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458899999999999999999875
No 386
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.27 E-value=0.0028 Score=67.79 Aligned_cols=37 Identities=43% Similarity=0.565 Sum_probs=34.1
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
..+++||-|.||+|||+|..|+|+..|-.++||+.|+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSe 1578 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSE 1578 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccc
Confidence 4578999999999999999999999999999998773
No 387
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.27 E-value=0.0028 Score=53.36 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444558999999999999999999875
No 388
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.27 E-value=0.0026 Score=54.42 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=24.4
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.++..+.|.||+|+|||+|++.++..+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 44555699999999999999999998653
No 389
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.27 E-value=0.0028 Score=53.67 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344458999999999999999999875
No 390
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.0029 Score=54.64 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|++.||...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999875
No 391
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.26 E-value=0.0029 Score=54.25 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.++|+...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444558999999999999999999865
No 392
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0029 Score=53.48 Aligned_cols=27 Identities=41% Similarity=0.576 Sum_probs=22.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++ -+.+.||+|+|||+|.++++..+
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 3444 57899999999999999999865
No 393
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.003 Score=54.86 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|++.|+...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444558999999999999999999875
No 394
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.25 E-value=0.0029 Score=60.99 Aligned_cols=46 Identities=35% Similarity=0.553 Sum_probs=32.6
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+.++.|....++.+. . .......++|+||||||||++++.++..+
T Consensus 189 d~~~v~Gq~~~~~al~----l-----------aa~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE----I-----------TAAGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CeEEEECcHHHHhhhh----e-----------eccCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 5667777665444432 2 12234569999999999999999998765
No 395
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.25 E-value=0.0066 Score=57.97 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=53.9
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHH
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 231 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~ 231 (245)
.....+++|...+..++.+.|... ......||+.|-+||||.++||+|=... +.||+.++|..+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 456678999999999999888762 1233459999999999999999997665 78999999887654
Q ss_pred H
Q 025979 232 K 232 (245)
Q Consensus 232 ~ 232 (245)
.
T Consensus 288 s 288 (550)
T COG3604 288 S 288 (550)
T ss_pred H
Confidence 3
No 396
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0029 Score=54.60 Aligned_cols=28 Identities=39% Similarity=0.559 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|+++|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999875
No 397
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.24 E-value=0.0032 Score=51.56 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+..-+.+.||+|+|||+|++.++..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455559999999999999999999876
No 398
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.23 E-value=0.0029 Score=54.37 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.++++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 344458899999999999999999865
No 399
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0028 Score=53.96 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=23.5
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558899999999999999999875
No 400
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0031 Score=54.48 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455559999999999999999999875
No 401
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.22 E-value=0.0031 Score=54.36 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|+++|+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4455558999999999999999999865
No 402
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.21 E-value=0.0034 Score=53.29 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344448899999999999999999865
No 403
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.21 E-value=0.0033 Score=53.83 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558899999999999999999865
No 404
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.20 E-value=0.0032 Score=51.37 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.0
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.|.||+|+|||+|.+.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455559999999999999999999876
No 405
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.20 E-value=0.0063 Score=54.07 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=37.7
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcc-eeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG-VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~g-vLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+++-.+++.+-|.++... +..|+| .||.|++|+||++++|..|.-++..++.+..+
T Consensus 9 ~lVlf~~ai~hi~ri~Rv------------L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~ 65 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV------------LSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEIT 65 (268)
T ss_dssp -----HHHHHHHHHHHHH------------HCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTS
T ss_pred ceeeHHHHHHHHHHHHHH------------HcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEee
Confidence 344555655555555433 234455 89999999999999999998889999888643
No 406
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0032 Score=53.81 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=22.7
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.+.||+|+|||+|.++||..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34448999999999999999999876
No 407
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.20 E-value=0.0033 Score=53.57 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344449999999999999999999875
No 408
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.19 E-value=0.0033 Score=54.14 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.6
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.++.-+.+.||+|+|||+|.++|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445999999999999999999987
No 409
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.0035 Score=53.91 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344458999999999999999999875
No 410
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.19 E-value=0.0033 Score=54.50 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=23.5
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|+++|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444458899999999999999999875
No 411
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.19 E-value=0.0049 Score=56.68 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=27.1
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---------cceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---------~~~~~~v~~s 227 (245)
|+....-..++||||||||.+|..+|-.. +...++|+..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 34444448899999999999999886321 3456666653
No 412
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.18 E-value=0.0033 Score=54.72 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455559999999999999999999876
No 413
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.18 E-value=0.0032 Score=52.12 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|.+.|+...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999876
No 414
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.0039 Score=53.22 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=22.4
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+.--+.+.||+|||||+|...+|...
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 334448899999999999999999865
No 415
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0034 Score=53.87 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=23.5
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|++.+|..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3344458999999999999999999876
No 416
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.17 E-value=0.0043 Score=50.93 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344448999999999999999999875
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.16 E-value=0.0034 Score=53.20 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=22.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHh
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
++..+-++|.||+|+|||++.|.++.
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHH
Confidence 34446689999999999999999985
No 418
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.16 E-value=0.0031 Score=54.51 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344458899999999999999999865
No 419
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.16 E-value=0.0034 Score=52.61 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|.+.||...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455559999999999999999999976
No 420
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.16 E-value=0.0034 Score=53.90 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.++..+.+.||+|+|||+|.+.|+....
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34555599999999999999999998764
No 421
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.15 E-value=0.0037 Score=53.74 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=24.2
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.|.||+|+|||+|.+.|+...
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555669999999999999999999875
No 422
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.15 E-value=0.0057 Score=60.89 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.7
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.+.||+|+|||++|+.+|+.++.+| ++...+.
T Consensus 444 ~i~i~g~~~~gks~~~~~l~~~~~~~~--~~~~~~~ 477 (661)
T PRK11860 444 VICIDGPTASGKGTVAARVAEALGYHY--LDSGALY 477 (661)
T ss_pred eEEeeCCCCCCHHHHHHHHHHHhCCeE--ecHHHhh
Confidence 478899999999999999999999998 5544443
No 423
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.15 E-value=0.0035 Score=54.93 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999875
No 424
>PRK10908 cell division protein FtsE; Provisional
Probab=96.15 E-value=0.0036 Score=53.34 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455558999999999999999999876
No 425
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0037 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=23.5
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558899999999999999999865
No 426
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.14 E-value=0.0033 Score=53.31 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=25.1
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+.++..+.+.||+|+|||+|.++|+..+
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566669999999999999999999876
No 427
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.14 E-value=0.0052 Score=59.18 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeechhHHHHHHh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s~l~~~~~ 234 (245)
|+.+++-+|++|+||+|||++|..++... |-+.+.++..+-.+.+.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~ 76 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDII 76 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHH
No 428
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.13 E-value=0.0036 Score=53.10 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++..+.+.||+|+|||+|.+.|+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 344458999999999999999999875
No 429
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0036 Score=51.39 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+...+.+.||+|+|||+|.+.+|..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458999999999999999999875
No 430
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0038 Score=52.83 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458899999999999999999865
No 431
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.13 E-value=0.0053 Score=58.09 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=27.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc----cceeeeechh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGS 227 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s 227 (245)
.|.-++|+||||+|||++|.-+|..+ |..+..+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 45679999999999999988887663 4555556554
No 432
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.13 E-value=0.0031 Score=53.61 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344448899999999999999999875
No 433
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.0037 Score=52.68 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999875
No 434
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.12 E-value=0.0038 Score=51.61 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+..-+.|.||+|+|||+|.+.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455559999999999999999999876
No 435
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.12 E-value=0.0055 Score=57.31 Aligned_cols=50 Identities=30% Similarity=0.390 Sum_probs=38.3
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
...|.-+.|++..+..|.-....| .-.|+|+-|+.|||||+++||||.-|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhC
Confidence 355677899988877775432221 22579999999999999999999988
No 436
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.0045 Score=52.00 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=23.4
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+...
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444559999999999999999999876
No 437
>PRK05439 pantothenate kinase; Provisional
Probab=96.12 E-value=0.0051 Score=55.83 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
-|.+.||||+|||++|+.|+..++
T Consensus 88 iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 377899999999999999998764
No 438
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.11 E-value=0.006 Score=50.17 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=23.2
Q ss_pred hhhccCCCcc-eeeecCCCCchHHHHHHHHh
Q 025979 186 KQIGIDPPRG-VLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 186 ~~~g~~~~~g-vLl~GPPGtGKT~lAkalA~ 215 (245)
..+|+...++ +++.||+|+|||+|.+.+..
T Consensus 11 ~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 11 SSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445443333 99999999999999999986
No 439
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.11 E-value=0.0037 Score=54.37 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|.+.++...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445559999999999999999999876
No 440
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.10 E-value=0.004 Score=52.40 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|.+.++...
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3455559999999999999999999875
No 441
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.10 E-value=0.0038 Score=53.37 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.+.|+...
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3445559999999999999999999875
No 442
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.10 E-value=0.0038 Score=53.84 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|++.|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445558899999999999999999876
No 443
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.10 E-value=0.0038 Score=52.61 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++..+.+.||+|+|||+|.+.++...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 344558999999999999999999865
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.10 E-value=0.0039 Score=55.48 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.7
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+++++||||+|||++.++++..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 579999999999999999999987
No 445
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0037 Score=54.49 Aligned_cols=40 Identities=33% Similarity=0.448 Sum_probs=29.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccce--eeeechhHH
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--FIRVVGSEF 229 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~--~~~v~~s~l 229 (245)
+.+...++++||+|+|||++++.++.-+... .+.+++..+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~ 68 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeec
Confidence 4455569999999999999999999877322 345665543
No 446
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.08 E-value=0.0033 Score=53.02 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.++|+...
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344448999999999999999999865
No 447
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.004 Score=54.12 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.+.++..+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444558899999999999999999875
No 448
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.08 E-value=0.0043 Score=47.18 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.5
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
|++.|+||+|||+|..++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 449
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0041 Score=54.28 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=29.3
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc--cceeeeechhHHH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT--TAAFIRVVGSEFV 230 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l--~~~~~~v~~s~l~ 230 (245)
.++-.+=++||+|||||+|++++|.-. ..--+.+++..+.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA 72 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence 344447799999999999999999866 3334556665544
No 450
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0039 Score=52.13 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=22.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
+.+..-+.|.||+|+|||+|.+.++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345555899999999999999999974
No 451
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.07 E-value=0.0043 Score=57.58 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.6
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..|++||||||||++++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998763
No 452
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.0071 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+.++||+||.|+||+.+|+++|..+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 453
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.07 E-value=0.0085 Score=57.61 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=34.2
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcc-eeeecCCCCchHHHHHHHHhccc
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRG-VLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~g-vLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.++++++-.+++.+.+.+.+. .++| +++.||+|+|||++..++.+.+.
T Consensus 219 ~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 219 LDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 455666655555666655543 3456 78999999999999998877763
No 454
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.06 E-value=0.0054 Score=56.73 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.5
Q ss_pred cc-eeeecCCCCchHHHHHHHHhcc
Q 025979 194 RG-VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~g-vLl~GPPGtGKT~lAkalA~~l 217 (245)
+| ++++||+|+|||++.+++.+.+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44 8999999999999999999776
No 455
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0041 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458899999999999999999875
No 456
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.06 E-value=0.0042 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..+++.||+|+|||+|.+++.+.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 44999999999999999999985
No 457
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.05 E-value=0.007 Score=43.39 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
++++|.+|+|||+++..+|..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999887
No 458
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0041 Score=53.95 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444558899999999999999999754
No 459
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.0043 Score=50.00 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=24.4
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.+..-+++.||+|+|||++.++++..+.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34555699999999999999999998763
No 460
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.05 E-value=0.0021 Score=56.75 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=25.4
Q ss_pred hhhccCCCcc--eeeecCCCCchHHHHHHHHhcc
Q 025979 186 KQIGIDPPRG--VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 186 ~~~g~~~~~g--vLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.+..+.| ++|.||+|||||++.|.|-+-.
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 4445555566 8899999999999999998755
No 461
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.05 E-value=0.0048 Score=53.08 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|+++|+..+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 444559999999999999999999876
No 462
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.05 E-value=0.0042 Score=52.82 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|.+.++...
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4455558999999999999999999865
No 463
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.05 E-value=0.0047 Score=53.18 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.+.-+.|.||+|+|||+|++.|+..+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344478999999999999999998874
No 464
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.04 E-value=0.0043 Score=63.38 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=24.9
Q ss_pred eeeecCCCCchHHHHHHHHhcccceee
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAAFI 222 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~~~ 222 (245)
+.+-||||||||++|+.||..+++.|+
T Consensus 37 i~idG~~gsGKst~~~~la~~l~~~~~ 63 (863)
T PRK12269 37 IALDGPAGSGKSSVCRLLASRLGAQCL 63 (863)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 778999999999999999999998764
No 465
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.04 E-value=0.0066 Score=54.56 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.3
Q ss_pred CcceeeecCCCCchHHHHHHHHhccc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
|--+.+.||+|+|||++|+.|+..+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33477999999999999998877663
No 466
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0042 Score=53.30 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.++|+...
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344458899999999999999999876
No 467
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.03 E-value=0.0043 Score=52.44 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558999999999999999999875
No 468
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.03 E-value=0.0069 Score=57.03 Aligned_cols=37 Identities=32% Similarity=0.588 Sum_probs=31.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
..+|++|++||||+++|+++.... +.+|+.+++..+-
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~ 206 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP 206 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence 459999999999999999997654 6789999987653
No 469
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0041 Score=52.71 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+ .-+.+.||+|+|||+|++.++..+
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 456 668999999999999999999876
No 470
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.02 E-value=0.0043 Score=52.67 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.++|+...
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344458899999999999999999875
No 471
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.0042 Score=54.01 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=23.2
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++|+...
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444558999999999999999999753
No 472
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.01 E-value=0.0042 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|++.|+..+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455559999999999999999999876
No 473
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.0042 Score=54.02 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.+.|+...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 3445558999999999999999999875
No 474
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.01 E-value=0.0045 Score=52.79 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|.+.++..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455558999999999999999999875
No 475
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.00 E-value=0.0044 Score=53.27 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|++.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344449999999999999999999876
No 476
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0047 Score=54.76 Aligned_cols=28 Identities=43% Similarity=0.616 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.++||..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455558999999999999999999876
No 477
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0053 Score=53.38 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.+.||+|+|||+|++.|+..+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3445559999999999999999999875
No 478
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.00 E-value=0.0044 Score=53.13 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.++++...
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999865
No 479
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.00 E-value=0.0086 Score=55.26 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+..|++||-||=.||||++|.|+-.-+|...+.|+++
T Consensus 153 PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p 189 (417)
T PF06431_consen 153 PKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP 189 (417)
T ss_dssp TTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-
T ss_pred CcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCC
Confidence 3446699999999999999999999998888888765
No 480
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.0046 Score=53.45 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.|+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444558899999999999999999875
No 481
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.99 E-value=0.0057 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.-+.|.||+|+|||+|.+.|+..+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3448899999999999999999875
No 482
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.99 E-value=0.0048 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=23.3
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.+.++...
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3444558899999999999999999865
No 483
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.99 E-value=0.0069 Score=54.46 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+..+.+.||||+|||+++..++..+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44558899999999999999998866
No 484
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.98 E-value=0.005 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344459999999999999999999876
No 485
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=95.98 E-value=0.0046 Score=59.93 Aligned_cols=27 Identities=30% Similarity=0.510 Sum_probs=23.3
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
....++|++||+|||||+|-|.+|.-.
T Consensus 459 ~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred cCCCeEEEECCCCCchhHHHHHHhccc
Confidence 445569999999999999999999755
No 486
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.0045 Score=57.01 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|||||+|.+.||...
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3444558999999999999999999876
No 487
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.97 E-value=0.0049 Score=51.61 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444559999999999999999999875
No 488
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.97 E-value=0.0058 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344459999999999999999999875
No 489
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.96 E-value=0.0053 Score=52.39 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.3
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|+++++..+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344458999999999999999999876
No 490
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.96 E-value=0.0048 Score=53.07 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.++++...
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999876
No 491
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0046 Score=53.80 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.0
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|+++|+...
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3444559999999999999999999753
No 492
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.96 E-value=0.0059 Score=50.90 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+..-+.+.||+|+|||+|.+.++...
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3455558899999999999999999865
No 493
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.95 E-value=0.0053 Score=51.68 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
+.++..+.+.||+|+|||+|.+.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445566999999999999999999997
No 494
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.95 E-value=0.0048 Score=54.02 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=23.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.++.-+.|.||+|+|||+|.+.|+..+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4445599999999999999999998763
No 495
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.95 E-value=0.0049 Score=53.18 Aligned_cols=28 Identities=32% Similarity=0.641 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.++|+..+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558899999999999999999875
No 496
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0049 Score=52.02 Aligned_cols=29 Identities=45% Similarity=0.704 Sum_probs=24.2
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.++.-+.+.||+|+|||+|.+.|+....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 34445599999999999999999998754
No 497
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.0049 Score=54.89 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|.++|+..+
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444559999999999999999999876
No 498
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.93 E-value=0.0041 Score=60.36 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=22.6
Q ss_pred ceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
=++++||||||||....-|-..+ +-.++.+.++
T Consensus 203 l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPS 238 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPS 238 (649)
T ss_pred ceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCc
Confidence 38899999999998665554443 4555555544
No 499
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.93 E-value=0.0051 Score=53.74 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=23.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++..+.|.||+|+|||+|+++++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558899999999999999999876
No 500
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0049 Score=54.20 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.|.||+|+|||+|+++|+...
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3444558899999999999999999875
Done!