Query 025979
Match_columns 245
No_of_seqs 282 out of 2525
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 21:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_K 26S protease regulatory 100.0 6.4E-42 2.2E-46 318.8 10.5 215 31-245 44-258 (428)
2 4b4t_J 26S protease regulatory 100.0 1.5E-41 5E-46 313.5 11.0 211 35-245 24-234 (405)
3 4b4t_I 26S protease regulatory 100.0 1.5E-41 5.1E-46 314.9 7.9 232 14-245 23-268 (437)
4 4b4t_M 26S protease regulatory 100.0 1.3E-39 4.3E-44 303.7 8.4 215 31-245 27-267 (434)
5 4b4t_L 26S protease subunit RP 100.0 1.8E-39 6.3E-44 302.8 9.2 202 44-245 66-267 (437)
6 4b4t_H 26S protease regulatory 100.0 9.6E-36 3.3E-40 278.2 4.3 155 91-245 141-295 (467)
7 3cf2_A TER ATPase, transitiona 99.8 1.7E-22 5.7E-27 200.4 3.8 95 151-245 469-563 (806)
8 3cf2_A TER ATPase, transitiona 99.8 1.4E-22 4.9E-27 200.8 3.0 95 151-245 196-290 (806)
9 3cf0_A Transitional endoplasmi 99.8 5.7E-20 1.9E-24 163.0 6.5 94 152-245 8-101 (301)
10 2x8a_A Nuclear valosin-contain 99.8 2.9E-20 9.8E-25 163.4 1.4 94 152-245 3-96 (274)
11 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.2E-19 4.1E-24 162.7 1.1 93 152-245 5-98 (322)
12 3eie_A Vacuolar protein sortin 99.7 3.1E-19 1.1E-23 159.5 3.0 94 151-245 10-103 (322)
13 2qp9_X Vacuolar protein sortin 99.7 1.4E-18 4.7E-23 157.8 3.0 94 151-245 43-136 (355)
14 3h4m_A Proteasome-activating n 99.7 1.5E-18 5.2E-23 151.2 2.6 98 148-245 6-103 (285)
15 2zan_A Vacuolar protein sortin 99.7 5.1E-18 1.7E-22 158.5 4.4 95 150-245 125-220 (444)
16 2r62_A Cell division protease 99.7 2.7E-17 9.2E-22 142.2 3.5 93 152-245 4-96 (268)
17 1lv7_A FTSH; alpha/beta domain 99.7 1.2E-17 4.2E-22 143.8 1.2 94 151-245 4-97 (257)
18 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.2E-17 4.2E-22 143.2 1.1 91 154-245 1-91 (262)
19 2ce7_A Cell division protein F 99.6 3E-17 1E-21 154.6 3.5 92 153-245 10-101 (476)
20 3hu3_A Transitional endoplasmi 99.6 4.2E-17 1.4E-21 154.2 3.9 92 154-245 199-290 (489)
21 3b9p_A CG5977-PA, isoform A; A 99.6 4.7E-17 1.6E-21 142.7 1.7 93 152-245 14-106 (297)
22 3d8b_A Fidgetin-like protein 1 99.6 9.2E-17 3.1E-21 145.7 1.7 94 151-245 76-169 (357)
23 3vfd_A Spastin; ATPase, microt 99.6 2.1E-16 7.3E-21 144.5 3.4 94 151-245 107-200 (389)
24 1ypw_A Transitional endoplasmi 99.6 9.7E-17 3.3E-21 159.8 0.7 95 151-245 469-563 (806)
25 2dhr_A FTSH; AAA+ protein, hex 99.6 2.7E-16 9.1E-21 149.0 3.6 91 154-245 26-116 (499)
26 1ixz_A ATP-dependent metallopr 99.6 9.9E-16 3.4E-20 131.6 5.4 94 151-245 8-101 (254)
27 1ypw_A Transitional endoplasmi 99.6 3.1E-16 1E-20 156.2 2.5 93 153-245 198-290 (806)
28 1iy2_A ATP-dependent metallopr 99.5 6.3E-15 2.1E-19 128.6 5.7 93 152-245 33-125 (278)
29 2c9o_A RUVB-like 1; hexameric 99.5 3.2E-15 1.1E-19 139.7 3.3 85 152-245 30-116 (456)
30 3t15_A Ribulose bisphosphate c 99.5 4.2E-15 1.4E-19 131.3 0.2 58 188-245 31-88 (293)
31 3m6a_A ATP-dependent protease 99.4 5.3E-15 1.8E-19 141.3 -0.9 150 64-243 8-167 (543)
32 1g41_A Heat shock protein HSLU 99.4 3.3E-14 1.1E-18 132.7 2.5 88 158-245 14-104 (444)
33 2wg5_A General control protein 99.4 2.3E-13 8E-18 103.8 5.6 100 51-150 8-107 (109)
34 3syl_A Protein CBBX; photosynt 99.3 2.1E-13 7.3E-18 119.6 1.3 86 158-244 30-125 (309)
35 3pxi_A Negative regulator of g 99.3 2.5E-13 8.4E-18 134.2 0.9 177 7-235 369-566 (758)
36 1qvr_A CLPB protein; coiled co 99.2 1.5E-13 5E-18 137.6 -6.9 93 132-232 525-630 (854)
37 3hws_A ATP-dependent CLP prote 99.2 4.4E-12 1.5E-16 114.6 1.9 78 160-237 16-96 (363)
38 1ofh_A ATP-dependent HSL prote 99.1 8.5E-12 2.9E-16 108.8 1.1 78 159-236 15-94 (310)
39 1sxj_A Activator 1 95 kDa subu 99.1 1.3E-11 4.3E-16 117.1 2.2 84 151-234 31-118 (516)
40 3uk6_A RUVB-like 2; hexameric 99.1 6.6E-11 2.3E-15 106.1 4.3 78 153-238 38-117 (368)
41 1um8_A ATP-dependent CLP prote 99.1 5.6E-11 1.9E-15 107.7 3.5 79 159-237 21-117 (376)
42 3pfi_A Holliday junction ATP-d 99.0 2.2E-10 7.4E-15 101.8 6.9 67 155-229 25-91 (338)
43 3h43_A Proteasome-activating n 99.0 1.5E-10 5.1E-15 84.3 4.4 76 64-139 2-77 (85)
44 1jbk_A CLPB protein; beta barr 99.0 1.1E-10 3.8E-15 93.5 4.0 62 156-230 19-90 (195)
45 3m9b_A Proteasome-associated A 99.0 8.7E-10 3E-14 94.4 8.1 108 36-145 54-161 (251)
46 3pxg_A Negative regulator of g 99.0 2.4E-10 8.1E-15 107.1 4.4 74 156-245 177-260 (468)
47 2p65_A Hypothetical protein PF 99.0 1.9E-10 6.4E-15 92.3 2.8 63 156-231 19-91 (187)
48 1d2n_A N-ethylmaleimide-sensit 99.0 3.7E-10 1.3E-14 97.7 4.5 67 159-228 33-99 (272)
49 3cmw_A Protein RECA, recombina 99.0 5.8E-11 2E-15 125.3 -0.8 93 153-245 1014-1153(1706)
50 3pxi_A Negative regulator of g 98.9 6.4E-10 2.2E-14 109.8 4.4 74 156-245 177-260 (758)
51 1hqc_A RUVB; extended AAA-ATPa 98.9 1.2E-09 3.9E-14 96.2 5.6 68 154-229 7-74 (324)
52 3co5_A Putative two-component 98.9 7.5E-10 2.6E-14 87.2 2.6 61 160-232 5-65 (143)
53 1r6b_X CLPA protein; AAA+, N-t 98.8 1.5E-09 5E-14 107.0 4.5 66 159-232 458-527 (758)
54 3u61_B DNA polymerase accessor 98.8 4.7E-09 1.6E-13 92.7 6.3 64 154-229 21-84 (324)
55 1l8q_A Chromosomal replication 98.8 5E-09 1.7E-13 92.8 6.0 73 154-237 6-84 (324)
56 2bjv_A PSP operon transcriptio 98.8 5.1E-09 1.7E-13 90.0 5.4 63 156-229 3-68 (265)
57 1qvr_A CLPB protein; coiled co 98.8 2.8E-09 9.5E-14 106.6 4.2 76 156-244 167-254 (854)
58 4fcw_A Chaperone protein CLPB; 98.8 1E-08 3.5E-13 89.6 7.2 63 159-229 17-86 (311)
59 3n70_A Transport activator; si 98.8 5.2E-09 1.8E-13 82.4 4.4 59 160-230 2-63 (145)
60 3ec2_A DNA replication protein 98.7 1.4E-08 4.8E-13 82.2 6.5 46 189-234 34-83 (180)
61 3pvs_A Replication-associated 98.7 9.1E-09 3.1E-13 96.0 5.9 60 155-227 22-84 (447)
62 2r44_A Uncharacterized protein 98.7 1E-08 3.5E-13 90.9 4.9 54 158-226 26-79 (331)
63 2chg_A Replication factor C sm 98.7 2.6E-08 8.9E-13 81.4 6.4 61 154-227 12-77 (226)
64 1r6b_X CLPA protein; AAA+, N-t 98.7 6.4E-09 2.2E-13 102.4 2.8 76 156-244 183-270 (758)
65 1g8p_A Magnesium-chelatase 38 98.7 1.6E-08 5.4E-13 89.7 4.9 55 151-218 16-70 (350)
66 1sxj_D Activator 1 41 kDa subu 98.6 2E-08 7E-13 89.0 4.8 63 153-228 31-99 (353)
67 2chq_A Replication factor C sm 98.6 2.2E-08 7.6E-13 87.2 4.8 63 153-228 11-78 (319)
68 1in4_A RUVB, holliday junction 98.6 3.4E-08 1.2E-12 88.3 6.0 64 157-228 23-86 (334)
69 3bos_A Putative DNA replicatio 98.6 5.1E-08 1.7E-12 81.2 6.2 65 154-231 23-93 (242)
70 2w58_A DNAI, primosome compone 98.6 9.8E-08 3.4E-12 78.4 7.5 42 193-234 54-98 (202)
71 2v1u_A Cell division control p 98.6 4.2E-08 1.4E-12 87.5 5.6 62 158-228 18-88 (387)
72 1iqp_A RFCS; clamp loader, ext 98.6 5.6E-08 1.9E-12 84.9 5.9 63 153-228 19-86 (327)
73 2qby_B CDC6 homolog 3, cell di 98.5 8.8E-08 3E-12 85.8 6.7 63 158-229 19-92 (384)
74 2z4s_A Chromosomal replication 98.5 7.7E-08 2.6E-12 89.4 5.9 72 153-236 99-178 (440)
75 3te6_A Regulatory protein SIR3 98.5 3.5E-08 1.2E-12 88.3 2.7 59 161-228 22-90 (318)
76 1sxj_B Activator 1 37 kDa subu 98.5 1.3E-07 4.5E-12 82.4 5.6 62 154-228 16-82 (323)
77 2qby_A CDC6 homolog 1, cell di 98.5 1.3E-07 4.3E-12 84.2 5.5 63 157-228 18-86 (386)
78 2qgz_A Helicase loader, putati 98.5 1.6E-07 5.5E-12 83.3 6.1 43 193-235 152-198 (308)
79 1ojl_A Transcriptional regulat 98.5 9.9E-08 3.4E-12 84.4 4.6 60 159-229 2-64 (304)
80 1njg_A DNA polymerase III subu 98.4 2.4E-07 8.3E-12 76.2 5.3 54 154-219 18-71 (250)
81 3nbx_X ATPase RAVA; AAA+ ATPas 98.4 2.2E-07 7.6E-12 87.8 4.9 45 160-219 23-67 (500)
82 1sxj_C Activator 1 40 kDa subu 98.4 3.3E-07 1.1E-11 81.6 5.4 61 154-227 20-85 (340)
83 1fnn_A CDC6P, cell division co 98.4 5E-07 1.7E-11 80.7 6.5 61 158-227 16-82 (389)
84 1jr3_A DNA polymerase III subu 98.3 3.6E-07 1.2E-11 81.4 5.4 53 155-219 12-64 (373)
85 1sxj_E Activator 1 40 kDa subu 98.3 3.7E-07 1.3E-11 81.1 4.4 53 152-217 7-60 (354)
86 3vaa_A Shikimate kinase, SK; s 98.3 6.4E-07 2.2E-11 73.7 4.8 45 190-236 22-66 (199)
87 1u0j_A DNA replication protein 98.3 2E-07 6.9E-12 81.3 1.7 25 193-217 104-128 (267)
88 1tue_A Replication protein E1; 98.2 4.6E-07 1.6E-11 76.3 2.8 34 190-223 55-88 (212)
89 1zp6_A Hypothetical protein AT 98.1 2E-06 7E-11 69.6 4.6 41 190-230 6-46 (191)
90 3iij_A Coilin-interacting nucl 98.0 3.1E-06 1.1E-10 68.1 3.6 33 192-224 10-42 (180)
91 1zuh_A Shikimate kinase; alpha 98.0 3.4E-06 1.1E-10 67.2 3.6 41 194-236 8-48 (168)
92 2kjq_A DNAA-related protein; s 98.0 2.6E-06 8.8E-11 67.6 2.8 38 192-229 35-75 (149)
93 1svm_A Large T antigen; AAA+ f 98.0 4.8E-06 1.6E-10 76.0 5.0 37 189-225 165-201 (377)
94 3k1j_A LON protease, ATP-depen 98.0 6E-06 2E-10 79.5 5.8 52 152-218 34-85 (604)
95 3f9v_A Minichromosome maintena 98.0 1.7E-06 5.7E-11 83.4 1.7 29 195-223 329-357 (595)
96 1w5s_A Origin recognition comp 97.9 1.1E-05 3.7E-10 72.6 6.3 61 158-226 21-94 (412)
97 1y63_A LMAJ004144AAA protein; 97.9 5.1E-06 1.8E-10 67.5 3.7 36 194-231 11-47 (184)
98 2gno_A DNA polymerase III, gam 97.9 7.4E-06 2.5E-10 72.6 4.6 52 163-227 1-58 (305)
99 1gvn_B Zeta; postsegregational 97.9 5.1E-06 1.8E-10 72.8 3.5 38 192-229 32-69 (287)
100 2c95_A Adenylate kinase 1; tra 97.9 5E-06 1.7E-10 67.3 2.9 34 192-225 8-41 (196)
101 2cdn_A Adenylate kinase; phosp 97.9 6.4E-06 2.2E-10 67.5 3.3 31 194-224 21-51 (201)
102 2ga8_A Hypothetical 39.9 kDa p 97.9 9.3E-07 3.2E-11 80.1 -2.3 29 195-223 26-54 (359)
103 1a5t_A Delta prime, HOLB; zinc 97.8 1.3E-05 4.4E-10 71.4 4.9 28 192-219 23-50 (334)
104 3umf_A Adenylate kinase; rossm 97.8 1.3E-05 4.6E-10 67.7 4.7 41 191-233 27-67 (217)
105 2p5t_B PEZT; postsegregational 97.8 7.4E-06 2.5E-10 70.1 3.1 39 191-229 30-68 (253)
106 1ak2_A Adenylate kinase isoenz 97.8 1E-05 3.5E-10 68.2 3.5 37 193-231 16-52 (233)
107 2bwj_A Adenylate kinase 5; pho 97.8 8.8E-06 3E-10 66.0 3.0 31 193-223 12-42 (199)
108 3t61_A Gluconokinase; PSI-biol 97.8 1.2E-05 4E-10 66.0 3.4 32 193-224 18-49 (202)
109 2fna_A Conserved hypothetical 97.8 3.1E-05 1.1E-09 67.8 6.1 57 154-227 8-64 (357)
110 1ukz_A Uridylate kinase; trans 97.8 1.4E-05 4.7E-10 65.4 3.4 36 194-231 16-51 (203)
111 3tlx_A Adenylate kinase 2; str 97.7 1.5E-05 5.2E-10 67.9 3.3 38 191-230 27-64 (243)
112 1knq_A Gluconate kinase; ALFA/ 97.7 1.7E-05 5.9E-10 63.3 3.4 32 194-225 9-40 (175)
113 3nwj_A ATSK2; P loop, shikimat 97.7 1.6E-05 5.5E-10 68.5 3.4 40 193-234 48-87 (250)
114 3uie_A Adenylyl-sulfate kinase 97.7 2.8E-05 9.5E-10 63.8 4.1 38 192-229 24-64 (200)
115 4eun_A Thermoresistant glucoki 97.7 2.6E-05 9E-10 64.0 3.8 36 192-229 28-63 (200)
116 2qen_A Walker-type ATPase; unk 97.7 7.2E-05 2.5E-09 65.4 6.9 57 154-227 7-63 (350)
117 2grj_A Dephospho-COA kinase; T 97.6 2E-05 7E-10 65.1 2.6 36 195-232 14-49 (192)
118 2vhj_A Ntpase P4, P4; non- hyd 97.6 1.5E-05 5.1E-10 71.4 1.4 36 189-224 119-156 (331)
119 2wwf_A Thymidilate kinase, put 97.5 2.8E-05 9.4E-10 63.7 2.3 33 192-224 9-41 (212)
120 1nn5_A Similar to deoxythymidy 97.5 3.1E-05 1E-09 63.5 2.3 31 192-222 8-38 (215)
121 2qor_A Guanylate kinase; phosp 97.5 8.2E-05 2.8E-09 61.2 4.9 29 190-218 9-37 (204)
122 2bbw_A Adenylate kinase 4, AK4 97.5 4.8E-05 1.6E-09 64.4 3.4 30 193-222 27-56 (246)
123 2yvu_A Probable adenylyl-sulfa 97.5 6.8E-05 2.3E-09 60.5 4.0 38 193-230 13-53 (186)
124 2cvh_A DNA repair and recombin 97.5 6.4E-05 2.2E-09 61.7 3.7 39 189-227 16-54 (220)
125 3a8t_A Adenylate isopentenyltr 97.4 7.7E-05 2.6E-09 67.1 3.9 34 194-227 41-74 (339)
126 1m7g_A Adenylylsulfate kinase; 97.4 0.00011 3.9E-09 60.6 4.6 39 191-229 23-65 (211)
127 1n0w_A DNA repair protein RAD5 97.4 0.00013 4.6E-09 60.7 4.9 40 189-228 20-68 (243)
128 3tau_A Guanylate kinase, GMP k 97.4 0.00014 4.7E-09 60.2 4.8 27 192-218 7-33 (208)
129 3r20_A Cytidylate kinase; stru 97.4 8.6E-05 2.9E-09 63.4 3.4 33 193-225 9-41 (233)
130 1uj2_A Uridine-cytidine kinase 97.4 9.2E-05 3.1E-09 63.0 3.4 38 193-230 22-67 (252)
131 2qt1_A Nicotinamide riboside k 97.4 0.00011 3.8E-09 60.3 3.8 32 194-225 22-54 (207)
132 3cmu_A Protein RECA, recombina 97.3 0.00013 4.4E-09 78.5 4.7 38 180-217 1411-1451(2050)
133 3foz_A TRNA delta(2)-isopenten 97.3 0.00014 4.6E-09 64.8 3.9 35 193-227 10-44 (316)
134 4akg_A Glutathione S-transfera 97.3 7.9E-05 2.7E-09 82.2 2.8 37 191-227 1265-1302(2695)
135 3zvl_A Bifunctional polynucleo 97.3 0.00013 4.4E-09 67.1 3.7 33 193-225 258-290 (416)
136 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.0001 3.5E-09 60.6 2.6 29 189-217 19-47 (235)
137 4e22_A Cytidylate kinase; P-lo 97.3 0.00016 5.5E-09 61.7 3.8 35 194-230 28-62 (252)
138 1q3t_A Cytidylate kinase; nucl 97.2 0.00018 6.2E-09 60.5 3.7 35 194-230 17-51 (236)
139 4akg_A Glutathione S-transfera 97.2 0.00012 4.1E-09 80.8 2.9 37 192-228 644-680 (2695)
140 2dr3_A UPF0273 protein PH0284; 97.2 0.00015 5.1E-09 60.4 2.9 38 189-226 19-59 (247)
141 1z6g_A Guanylate kinase; struc 97.2 0.00016 5.5E-09 60.4 2.9 33 185-217 13-47 (218)
142 2ehv_A Hypothetical protein PH 97.2 0.00016 5.5E-09 60.4 2.8 26 189-214 26-51 (251)
143 3c8u_A Fructokinase; YP_612366 97.2 0.00021 7.2E-09 58.9 3.4 34 193-226 22-60 (208)
144 3hr8_A Protein RECA; alpha and 97.2 0.00015 5.1E-09 65.6 2.5 38 190-227 58-98 (356)
145 2qmh_A HPR kinase/phosphorylas 97.2 0.00023 7.8E-09 59.6 3.4 32 193-225 34-65 (205)
146 2z43_A DNA repair and recombin 97.1 0.00035 1.2E-08 61.8 4.8 49 179-227 91-150 (324)
147 2axn_A 6-phosphofructo-2-kinas 97.1 0.00024 8.3E-09 67.2 3.9 43 194-236 36-81 (520)
148 4a74_A DNA repair and recombin 97.1 0.00016 5.5E-09 59.6 2.3 28 189-216 21-48 (231)
149 2f6r_A COA synthase, bifunctio 97.1 0.00021 7.1E-09 62.2 3.0 33 194-229 76-108 (281)
150 3upu_A ATP-dependent DNA helic 97.1 0.00034 1.2E-08 64.8 4.4 23 195-217 47-69 (459)
151 1pzn_A RAD51, DNA repair and r 97.1 0.00038 1.3E-08 62.5 4.2 50 179-228 115-175 (349)
152 1v5w_A DMC1, meiotic recombina 97.0 0.00066 2.2E-08 60.7 5.5 39 178-216 105-145 (343)
153 2zr9_A Protein RECA, recombina 97.0 0.00031 1.1E-08 63.2 3.1 38 189-226 57-97 (349)
154 3lnc_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 58.2 3.4 26 192-217 26-52 (231)
155 1u94_A RECA protein, recombina 97.0 0.00057 1.9E-08 61.7 4.7 38 189-226 59-99 (356)
156 2zts_A Putative uncharacterize 97.0 0.00038 1.3E-08 57.9 3.1 37 189-225 26-66 (251)
157 1htw_A HI0065; nucleotide-bind 96.9 0.0005 1.7E-08 54.9 3.4 27 191-217 31-57 (158)
158 1x6v_B Bifunctional 3'-phospho 96.9 0.00054 1.9E-08 66.3 4.0 36 194-229 53-91 (630)
159 1ny5_A Transcriptional regulat 96.9 0.00091 3.1E-08 60.7 5.2 61 159-230 137-200 (387)
160 1cr0_A DNA primase/helicase; R 96.9 0.00043 1.5E-08 60.0 2.9 30 188-217 30-59 (296)
161 1rz3_A Hypothetical protein rb 96.9 0.00066 2.2E-08 55.6 3.8 32 193-224 22-56 (201)
162 2jeo_A Uridine-cytidine kinase 96.9 0.00042 1.4E-08 58.6 2.7 25 196-220 28-52 (245)
163 1znw_A Guanylate kinase, GMP k 96.9 0.00051 1.8E-08 56.5 3.1 26 192-217 19-44 (207)
164 1nlf_A Regulatory protein REPA 96.9 0.00039 1.3E-08 59.9 2.4 29 189-217 26-54 (279)
165 4b3f_X DNA-binding protein smu 96.9 0.0013 4.4E-08 63.6 6.3 32 196-227 208-242 (646)
166 4gp7_A Metallophosphoesterase; 96.8 0.00035 1.2E-08 56.0 1.8 23 192-214 8-30 (171)
167 3ney_A 55 kDa erythrocyte memb 96.8 0.00064 2.2E-08 56.5 3.4 24 194-217 20-43 (197)
168 3gmt_A Adenylate kinase; ssgci 96.8 0.00044 1.5E-08 58.9 2.3 31 194-224 9-39 (230)
169 1xp8_A RECA protein, recombina 96.8 0.00056 1.9E-08 62.0 3.1 38 189-226 70-110 (366)
170 2i1q_A DNA repair and recombin 96.8 0.00088 3E-08 58.9 4.2 28 189-216 94-121 (322)
171 2v9p_A Replication protein E1; 96.8 0.00066 2.3E-08 60.1 3.4 29 190-218 123-151 (305)
172 2eyu_A Twitching motility prot 96.8 0.00075 2.6E-08 58.2 3.4 29 190-218 22-50 (261)
173 4etp_A Kinesin-like protein KA 96.7 0.0089 3E-07 54.8 10.5 50 155-210 109-158 (403)
174 3cmu_A Protein RECA, recombina 96.7 0.00052 1.8E-08 73.9 2.5 55 177-231 713-773 (2050)
175 3u06_A Protein claret segregat 96.7 0.01 3.5E-07 54.5 10.8 50 155-210 107-156 (412)
176 1m8p_A Sulfate adenylyltransfe 96.7 0.001 3.5E-08 63.7 4.2 38 194-231 397-438 (573)
177 1uf9_A TT1252 protein; P-loop, 96.7 0.00077 2.6E-08 54.5 2.9 24 193-216 8-31 (203)
178 2fz4_A DNA repair protein RAD2 96.6 0.0023 8E-08 53.9 5.6 42 194-235 109-151 (237)
179 3hdt_A Putative kinase; struct 96.6 0.00093 3.2E-08 56.4 3.0 29 195-223 16-44 (223)
180 3bh0_A DNAB-like replicative h 96.6 0.0013 4.5E-08 58.0 4.1 37 189-225 64-103 (315)
181 3e1s_A Exodeoxyribonuclease V, 96.6 0.0019 6.6E-08 61.8 5.5 34 194-227 205-241 (574)
182 3io5_A Recombination and repai 96.6 0.00084 2.9E-08 60.0 2.8 37 190-227 26-67 (333)
183 3b9q_A Chloroplast SRP recepto 96.6 0.00088 3E-08 59.0 2.8 27 191-217 98-124 (302)
184 4eaq_A DTMP kinase, thymidylat 96.6 0.001 3.5E-08 56.0 3.0 30 194-223 27-58 (229)
185 1odf_A YGR205W, hypothetical 3 96.6 0.00089 3E-08 58.7 2.7 27 193-219 31-57 (290)
186 1s96_A Guanylate kinase, GMP k 96.6 0.0011 3.9E-08 55.6 3.2 28 191-218 14-41 (219)
187 1bif_A 6-phosphofructo-2-kinas 96.5 0.00077 2.6E-08 62.7 2.1 43 193-235 39-84 (469)
188 3lda_A DNA repair protein RAD5 96.5 0.0017 5.7E-08 59.6 4.2 34 181-214 164-199 (400)
189 1p5z_B DCK, deoxycytidine kina 96.5 0.00095 3.3E-08 56.9 2.3 31 192-222 23-54 (263)
190 2ewv_A Twitching motility prot 96.5 0.001 3.4E-08 60.3 2.5 33 186-218 129-161 (372)
191 3cr8_A Sulfate adenylyltranfer 96.5 0.0012 4.3E-08 62.9 3.2 40 192-231 368-411 (552)
192 1sq5_A Pantothenate kinase; P- 96.4 0.0016 5.6E-08 57.1 3.5 25 194-218 81-105 (308)
193 3kta_A Chromosome segregation 96.4 0.00086 2.9E-08 53.5 1.5 24 195-218 28-51 (182)
194 4a1f_A DNAB helicase, replicat 96.4 0.0053 1.8E-07 55.0 6.8 46 179-224 31-80 (338)
195 3jvv_A Twitching mobility prot 96.4 0.0014 4.7E-08 59.2 2.9 24 195-218 125-148 (356)
196 2r6a_A DNAB helicase, replicat 96.4 0.002 6.8E-08 59.6 4.0 37 189-225 199-239 (454)
197 1vma_A Cell division protein F 96.4 0.0013 4.5E-08 58.1 2.6 27 191-217 102-128 (306)
198 2og2_A Putative signal recogni 96.4 0.0012 4.3E-08 59.6 2.4 27 191-217 155-181 (359)
199 3tqf_A HPR(Ser) kinase; transf 96.4 0.0018 6.3E-08 52.9 3.1 25 192-216 15-39 (181)
200 2cbz_A Multidrug resistance-as 96.4 0.0015 5.2E-08 55.3 2.7 28 190-217 28-55 (237)
201 2q6t_A DNAB replication FORK h 96.3 0.0022 7.6E-08 59.2 3.9 37 189-225 196-236 (444)
202 3tif_A Uncharacterized ABC tra 96.3 0.0016 5.4E-08 55.2 2.7 27 191-217 29-55 (235)
203 2pcj_A ABC transporter, lipopr 96.3 0.0014 4.8E-08 55.0 2.1 27 191-217 28-54 (224)
204 3tqc_A Pantothenate kinase; bi 96.3 0.0024 8.2E-08 56.8 3.8 24 195-218 94-117 (321)
205 1rj9_A FTSY, signal recognitio 96.3 0.0019 6.5E-08 57.0 3.0 25 193-217 102-126 (304)
206 1z6t_A APAF-1, apoptotic prote 96.3 0.0037 1.3E-07 59.1 5.2 47 159-216 124-170 (591)
207 1b0u_A Histidine permease; ABC 96.3 0.0018 6.2E-08 55.7 2.7 27 191-217 30-56 (262)
208 2yhs_A FTSY, cell division pro 96.3 0.0014 5E-08 61.7 2.2 25 193-217 293-317 (503)
209 3aez_A Pantothenate kinase; tr 96.3 0.002 7E-08 56.9 3.0 25 194-218 91-115 (312)
210 3cmw_A Protein RECA, recombina 96.2 0.0029 9.9E-08 67.4 4.6 47 181-227 717-769 (1706)
211 3dzd_A Transcriptional regulat 96.2 0.0034 1.2E-07 56.6 4.4 60 159-229 129-190 (368)
212 1g6h_A High-affinity branched- 96.2 0.0017 6E-08 55.6 2.2 26 192-217 32-57 (257)
213 2v3c_C SRP54, signal recogniti 96.2 0.0024 8.1E-08 59.1 3.2 26 192-217 98-123 (432)
214 2onk_A Molybdate/tungstate ABC 96.2 0.0023 7.8E-08 54.5 2.8 27 190-217 22-48 (240)
215 1p9r_A General secretion pathw 96.2 0.0043 1.5E-07 57.1 4.9 22 196-217 170-191 (418)
216 2olj_A Amino acid ABC transpor 96.2 0.0022 7.7E-08 55.3 2.7 27 191-217 48-74 (263)
217 1mv5_A LMRA, multidrug resista 96.2 0.0021 7.2E-08 54.6 2.5 27 191-217 26-52 (243)
218 2px0_A Flagellar biosynthesis 96.2 0.0023 7.8E-08 56.2 2.8 26 192-217 104-129 (296)
219 3vkg_A Dynein heavy chain, cyt 96.1 0.002 6.7E-08 72.1 2.7 36 193-228 604-639 (3245)
220 2ixe_A Antigen peptide transpo 96.1 0.0023 8E-08 55.4 2.7 27 191-217 43-69 (271)
221 2pze_A Cystic fibrosis transme 96.1 0.0021 7.3E-08 54.1 2.4 27 191-217 32-58 (229)
222 1np6_A Molybdopterin-guanine d 96.1 0.0028 9.5E-08 51.4 3.0 26 192-217 5-30 (174)
223 2ghi_A Transport protein; mult 96.1 0.0024 8E-08 55.0 2.7 27 191-217 44-70 (260)
224 2gk6_A Regulator of nonsense t 96.1 0.0036 1.2E-07 60.3 4.2 32 195-226 197-232 (624)
225 1sgw_A Putative ABC transporte 96.1 0.0024 8.4E-08 53.4 2.6 27 191-217 33-59 (214)
226 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0022 7.4E-08 58.1 2.3 25 193-217 30-54 (359)
227 3e70_C DPA, signal recognition 96.1 0.0025 8.6E-08 56.8 2.8 26 192-217 128-153 (328)
228 2zu0_C Probable ATP-dependent 96.1 0.003 1E-07 54.5 3.1 26 191-216 44-69 (267)
229 3kl4_A SRP54, signal recogniti 96.1 0.0029 9.8E-08 58.6 3.2 25 193-217 97-121 (433)
230 1ji0_A ABC transporter; ATP bi 96.1 0.0022 7.7E-08 54.4 2.3 26 192-217 31-56 (240)
231 3gfo_A Cobalt import ATP-bindi 96.1 0.0023 7.9E-08 55.6 2.4 26 192-217 33-58 (275)
232 3b85_A Phosphate starvation-in 96.1 0.0024 8.4E-08 53.1 2.4 24 193-216 22-45 (208)
233 3bgw_A DNAB-like replicative h 96.1 0.0036 1.2E-07 58.0 3.8 44 182-225 185-232 (444)
234 2ff7_A Alpha-hemolysin translo 96.1 0.0023 8E-08 54.5 2.3 27 191-217 33-59 (247)
235 2qi9_C Vitamin B12 import ATP- 96.1 0.0024 8.2E-08 54.7 2.4 36 191-226 24-60 (249)
236 2gks_A Bifunctional SAT/APS ki 96.0 0.0038 1.3E-07 59.4 3.9 39 194-232 373-414 (546)
237 1g8f_A Sulfate adenylyltransfe 96.0 0.0028 9.7E-08 59.9 3.0 26 194-219 396-421 (511)
238 1vpl_A ABC transporter, ATP-bi 96.0 0.0028 9.7E-08 54.4 2.7 27 191-217 39-65 (256)
239 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0026 8.8E-08 54.3 2.5 26 191-216 27-52 (250)
240 2yyz_A Sugar ABC transporter, 96.0 0.0026 9E-08 57.5 2.6 26 192-217 28-53 (359)
241 4g1u_C Hemin import ATP-bindin 96.0 0.0027 9.2E-08 54.9 2.5 27 191-217 35-61 (266)
242 2ged_A SR-beta, signal recogni 96.0 0.006 2.1E-07 48.5 4.5 25 193-217 48-72 (193)
243 2yz2_A Putative ABC transporte 96.0 0.0028 9.7E-08 54.6 2.7 27 191-217 31-57 (266)
244 2it1_A 362AA long hypothetical 96.0 0.0027 9.2E-08 57.5 2.6 26 192-217 28-53 (362)
245 2ihy_A ABC transporter, ATP-bi 96.0 0.0026 8.7E-08 55.4 2.4 27 191-217 45-71 (279)
246 1zu4_A FTSY; GTPase, signal re 96.0 0.0039 1.3E-07 55.3 3.6 35 191-225 103-140 (320)
247 3dm5_A SRP54, signal recogniti 96.0 0.0037 1.3E-07 58.1 3.5 26 192-217 99-124 (443)
248 3rlf_A Maltose/maltodextrin im 96.0 0.0028 9.5E-08 57.8 2.6 26 192-217 28-53 (381)
249 2oap_1 GSPE-2, type II secreti 96.0 0.0027 9.3E-08 59.9 2.6 27 191-217 258-284 (511)
250 1oix_A RAS-related protein RAB 96.0 0.0031 1.1E-07 50.8 2.6 23 195-217 31-53 (191)
251 1z47_A CYSA, putative ABC-tran 96.0 0.0026 8.7E-08 57.5 2.2 26 192-217 40-65 (355)
252 3d31_A Sulfate/molybdate ABC t 96.0 0.0024 8E-08 57.5 2.0 26 192-217 25-50 (348)
253 1v43_A Sugar-binding transport 96.0 0.0033 1.1E-07 57.1 2.9 26 192-217 36-61 (372)
254 2gza_A Type IV secretion syste 95.9 0.0026 8.8E-08 57.3 2.1 29 190-218 172-200 (361)
255 2nq2_C Hypothetical ABC transp 95.9 0.0028 9.7E-08 54.3 2.3 27 191-217 29-55 (253)
256 1lw7_A Transcriptional regulat 95.9 0.0033 1.1E-07 56.3 2.8 29 193-221 170-198 (365)
257 2qm8_A GTPase/ATPase; G protei 95.9 0.005 1.7E-07 54.9 3.8 23 195-217 57-79 (337)
258 2dpy_A FLII, flagellum-specifi 95.9 0.0062 2.1E-07 56.4 4.5 38 190-227 152-193 (438)
259 1g29_1 MALK, maltose transport 95.9 0.0033 1.1E-07 57.0 2.5 26 192-217 28-53 (372)
260 1nrj_B SR-beta, signal recogni 95.9 0.0049 1.7E-07 50.2 3.3 24 194-217 13-36 (218)
261 2wji_A Ferrous iron transport 95.8 0.0041 1.4E-07 48.6 2.6 22 195-216 5-26 (165)
262 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0025 8.5E-08 56.7 1.5 36 191-226 169-206 (330)
263 1q57_A DNA primase/helicase; d 95.8 0.0038 1.3E-07 58.3 2.7 38 189-226 238-279 (503)
264 1oxx_K GLCV, glucose, ABC tran 95.8 0.0027 9.4E-08 57.1 1.5 26 192-217 30-55 (353)
265 2wjy_A Regulator of nonsense t 95.7 0.006 2E-07 60.6 4.0 23 195-217 373-395 (800)
266 3gd7_A Fusion complex of cysti 95.7 0.0043 1.5E-07 56.7 2.7 27 191-217 45-71 (390)
267 3vkg_A Dynein heavy chain, cyt 95.7 0.004 1.4E-07 69.7 2.9 37 191-227 1302-1339(3245)
268 2a5y_B CED-4; apoptosis; HET: 95.7 0.0069 2.4E-07 57.2 4.2 44 162-215 131-174 (549)
269 1w36_D RECD, exodeoxyribonucle 95.7 0.0069 2.4E-07 58.2 4.2 24 194-217 165-188 (608)
270 1f6b_A SAR1; gtpases, N-termin 95.7 0.0054 1.8E-07 49.6 3.0 21 195-215 27-47 (198)
271 1z2a_A RAS-related protein RAB 95.7 0.0051 1.7E-07 47.3 2.7 23 194-216 6-28 (168)
272 2bbs_A Cystic fibrosis transme 95.7 0.0042 1.4E-07 54.4 2.5 27 191-217 62-88 (290)
273 1pui_A ENGB, probable GTP-bind 95.7 0.0027 9.3E-08 51.4 1.1 27 191-217 24-50 (210)
274 2obl_A ESCN; ATPase, hydrolase 95.7 0.0066 2.3E-07 54.5 3.7 27 193-219 71-97 (347)
275 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0056 1.9E-07 57.1 3.2 28 190-217 135-162 (460)
276 1tf7_A KAIC; homohexamer, hexa 95.6 0.0047 1.6E-07 58.2 2.6 39 190-228 36-78 (525)
277 3nh6_A ATP-binding cassette SU 95.6 0.0041 1.4E-07 55.0 2.0 28 190-217 77-104 (306)
278 2pjz_A Hypothetical protein ST 95.6 0.0051 1.7E-07 53.1 2.6 25 193-217 30-54 (263)
279 1u8z_A RAS-related protein RAL 95.6 0.0062 2.1E-07 46.6 2.7 23 194-216 5-27 (168)
280 3v9p_A DTMP kinase, thymidylat 95.6 0.0054 1.8E-07 51.8 2.5 24 195-218 27-50 (227)
281 1z0j_A RAB-22, RAS-related pro 95.6 0.0065 2.2E-07 46.8 2.8 24 194-217 7-30 (170)
282 1tf7_A KAIC; homohexamer, hexa 95.5 0.0053 1.8E-07 57.8 2.6 29 189-217 277-305 (525)
283 2lkc_A Translation initiation 95.5 0.0082 2.8E-07 46.8 3.3 24 192-215 7-30 (178)
284 1m2o_B GTP-binding protein SAR 95.5 0.006 2E-07 48.9 2.5 21 195-215 25-45 (190)
285 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.0068 2.3E-07 47.2 2.8 23 194-216 8-30 (177)
286 2gxq_A Heat resistant RNA depe 95.5 0.027 9.1E-07 45.3 6.4 18 193-210 38-55 (207)
287 1z08_A RAS-related protein RAB 95.5 0.0072 2.5E-07 46.6 2.8 23 194-216 7-29 (170)
288 1upt_A ARL1, ADP-ribosylation 95.5 0.0082 2.8E-07 46.4 3.1 23 193-215 7-29 (171)
289 1ky3_A GTP-binding protein YPT 95.5 0.0072 2.5E-07 47.1 2.8 24 193-216 8-31 (182)
290 2p5s_A RAS and EF-hand domain 95.4 0.0073 2.5E-07 48.6 2.8 24 193-216 28-51 (199)
291 1r2q_A RAS-related protein RAB 95.4 0.0075 2.6E-07 46.3 2.7 21 195-215 8-28 (170)
292 2b8t_A Thymidine kinase; deoxy 95.4 0.0084 2.9E-07 50.5 3.1 22 196-217 15-36 (223)
293 3ice_A Transcription terminati 95.4 0.0078 2.7E-07 55.2 3.1 26 192-217 173-198 (422)
294 3tw8_B RAS-related protein RAB 95.4 0.0065 2.2E-07 47.3 2.3 23 194-216 10-32 (181)
295 2xzl_A ATP-dependent helicase 95.4 0.0089 3.1E-07 59.4 3.7 22 195-216 377-398 (802)
296 3bc1_A RAS-related protein RAB 95.4 0.0079 2.7E-07 47.3 2.7 22 194-215 12-33 (195)
297 4i1u_A Dephospho-COA kinase; s 95.4 0.0093 3.2E-07 49.9 3.2 32 194-226 10-41 (210)
298 2j37_W Signal recognition part 95.3 0.009 3.1E-07 56.3 3.3 35 192-226 100-137 (504)
299 2ffh_A Protein (FFH); SRP54, s 95.3 0.011 3.6E-07 54.7 3.7 26 192-217 97-122 (425)
300 2y8e_A RAB-protein 6, GH09086P 95.3 0.0081 2.8E-07 46.6 2.5 21 195-215 16-36 (179)
301 3con_A GTPase NRAS; structural 95.3 0.0089 3.1E-07 47.3 2.7 22 195-216 23-44 (190)
302 3tui_C Methionine import ATP-b 95.3 0.0086 2.9E-07 54.3 2.9 26 192-217 53-78 (366)
303 3t1o_A Gliding protein MGLA; G 95.2 0.0093 3.2E-07 47.1 2.8 23 195-217 16-38 (198)
304 3lv8_A DTMP kinase, thymidylat 95.2 0.0087 3E-07 50.8 2.7 25 194-218 28-52 (236)
305 1fzq_A ADP-ribosylation factor 95.2 0.0099 3.4E-07 47.1 2.9 23 194-216 17-39 (181)
306 2oil_A CATX-8, RAS-related pro 95.2 0.0093 3.2E-07 47.4 2.7 22 195-216 27-48 (193)
307 1moz_A ARL1, ADP-ribosylation 95.2 0.01 3.5E-07 46.5 2.9 24 192-215 17-40 (183)
308 1z0f_A RAB14, member RAS oncog 95.2 0.0098 3.3E-07 46.2 2.7 23 194-216 16-38 (179)
309 2fn4_A P23, RAS-related protei 95.2 0.0093 3.2E-07 46.4 2.6 23 194-216 10-32 (181)
310 2efe_B Small GTP-binding prote 95.2 0.01 3.5E-07 46.3 2.8 22 195-216 14-35 (181)
311 2a9k_A RAS-related protein RAL 95.2 0.0099 3.4E-07 46.5 2.7 23 194-216 19-41 (187)
312 1svi_A GTP-binding protein YSX 95.2 0.01 3.6E-07 47.0 2.9 23 194-216 24-46 (195)
313 2bme_A RAB4A, RAS-related prot 95.2 0.0092 3.2E-07 46.9 2.5 23 194-216 11-33 (186)
314 3f8t_A Predicted ATPase involv 95.1 0.013 4.6E-07 54.9 3.9 25 195-220 241-266 (506)
315 1f2t_A RAD50 ABC-ATPase; DNA d 95.1 0.01 3.5E-07 46.4 2.7 22 196-217 26-47 (149)
316 3ld9_A DTMP kinase, thymidylat 95.1 0.0096 3.3E-07 50.2 2.7 25 195-219 23-47 (223)
317 1ls1_A Signal recognition part 95.1 0.012 4.1E-07 51.4 3.3 26 192-217 97-122 (295)
318 2xxa_A Signal recognition part 95.1 0.012 4E-07 54.5 3.4 35 192-226 99-137 (433)
319 2wsm_A Hydrogenase expression/ 95.1 0.0088 3E-07 48.8 2.3 25 193-217 30-54 (221)
320 2atv_A RERG, RAS-like estrogen 95.1 0.011 3.9E-07 47.2 3.0 23 194-216 29-51 (196)
321 3p32_A Probable GTPase RV1496/ 95.1 0.012 4.2E-07 52.5 3.4 24 194-217 80-103 (355)
322 1j8m_F SRP54, signal recogniti 95.1 0.01 3.5E-07 52.0 2.8 25 193-217 98-122 (297)
323 1qhl_A Protein (cell division 95.1 0.0039 1.3E-07 52.7 0.1 22 196-217 30-51 (227)
324 2fwr_A DNA repair protein RAD2 95.1 0.025 8.4E-07 51.8 5.5 43 194-236 109-152 (472)
325 3sfz_A APAF-1, apoptotic pepti 95.1 0.02 6.9E-07 58.0 5.3 48 158-216 123-170 (1249)
326 2vp4_A Deoxynucleoside kinase; 95.1 0.0098 3.4E-07 49.6 2.5 21 196-216 23-43 (230)
327 2qag_B Septin-6, protein NEDD5 95.1 0.012 4E-07 54.5 3.2 21 196-216 45-65 (427)
328 2b6h_A ADP-ribosylation factor 95.0 0.011 3.9E-07 47.3 2.8 22 194-215 30-51 (192)
329 3kkq_A RAS-related protein M-R 95.0 0.011 3.9E-07 46.3 2.7 22 195-216 20-41 (183)
330 2g6b_A RAS-related protein RAB 95.0 0.012 3.9E-07 46.0 2.7 23 194-216 11-33 (180)
331 2gf9_A RAS-related protein RAB 95.0 0.012 4E-07 46.8 2.7 22 195-216 24-45 (189)
332 1qde_A EIF4A, translation init 95.0 0.064 2.2E-06 43.7 7.3 23 193-215 51-74 (224)
333 3b6e_A Interferon-induced heli 95.0 0.016 5.3E-07 46.8 3.4 24 194-217 49-72 (216)
334 3pqc_A Probable GTP-binding pr 95.0 0.01 3.5E-07 46.8 2.3 22 195-216 25-46 (195)
335 3tkl_A RAS-related protein RAB 95.0 0.012 4.1E-07 46.6 2.7 22 195-216 18-39 (196)
336 3c5c_A RAS-like protein 12; GD 95.0 0.012 4.2E-07 46.8 2.8 21 196-216 24-44 (187)
337 1zbd_A Rabphilin-3A; G protein 95.0 0.012 4.1E-07 47.2 2.7 23 194-216 9-31 (203)
338 1ksh_A ARF-like protein 2; sma 95.0 0.012 4.1E-07 46.4 2.7 25 192-216 17-41 (186)
339 3bwd_D RAC-like GTP-binding pr 95.0 0.012 4.3E-07 45.9 2.7 24 193-216 8-31 (182)
340 3ihw_A Centg3; RAS, centaurin, 95.0 0.013 4.3E-07 46.8 2.8 21 196-216 23-43 (184)
341 1knx_A Probable HPR(Ser) kinas 94.9 0.013 4.6E-07 51.9 3.1 24 192-215 146-169 (312)
342 1ko7_A HPR kinase/phosphatase; 94.9 0.014 4.9E-07 51.7 3.3 24 193-216 144-167 (314)
343 2rcn_A Probable GTPase ENGC; Y 94.9 0.013 4.5E-07 52.8 3.1 25 194-218 216-240 (358)
344 1x3s_A RAS-related protein RAB 94.9 0.013 4.4E-07 46.3 2.7 22 195-216 17-38 (195)
345 1yqt_A RNAse L inhibitor; ATP- 94.9 0.014 5E-07 55.2 3.4 27 191-217 45-71 (538)
346 1vg8_A RAS-related protein RAB 94.9 0.013 4.6E-07 46.9 2.8 24 193-216 8-31 (207)
347 2bov_A RAla, RAS-related prote 94.9 0.013 4.5E-07 46.8 2.7 22 195-216 16-37 (206)
348 3dz8_A RAS-related protein RAB 94.9 0.012 4.2E-07 46.8 2.5 22 195-216 25-46 (191)
349 3ch4_B Pmkase, phosphomevalona 94.8 0.026 8.9E-07 46.9 4.4 40 192-231 10-50 (202)
350 2fg5_A RAB-22B, RAS-related pr 94.8 0.013 4.5E-07 46.7 2.6 22 195-216 25-46 (192)
351 3reg_A RHO-like small GTPase; 94.8 0.014 4.8E-07 46.5 2.7 22 195-216 25-46 (194)
352 1zd9_A ADP-ribosylation factor 94.8 0.014 4.9E-07 46.3 2.7 22 195-216 24-45 (188)
353 2p67_A LAO/AO transport system 94.8 0.017 6E-07 51.3 3.5 25 193-217 56-80 (341)
354 1z06_A RAS-related protein RAB 94.8 0.015 5.1E-07 46.1 2.8 21 195-215 22-42 (189)
355 3lxx_A GTPase IMAP family memb 94.8 0.015 5E-07 48.5 2.8 23 194-216 30-52 (239)
356 2a5j_A RAS-related protein RAB 94.8 0.015 5.1E-07 46.3 2.7 21 196-216 24-44 (191)
357 2hf9_A Probable hydrogenase ni 94.7 0.016 5.4E-07 47.4 3.0 25 193-217 38-62 (226)
358 3cph_A RAS-related protein SEC 94.7 0.015 5.1E-07 46.8 2.7 23 194-216 21-43 (213)
359 4ag6_A VIRB4 ATPase, type IV s 94.7 0.022 7.4E-07 51.3 4.1 34 193-226 35-71 (392)
360 2bcg_Y Protein YP2, GTP-bindin 94.7 0.014 4.7E-07 47.0 2.5 23 194-216 9-31 (206)
361 1hv8_A Putative ATP-dependent 94.7 0.054 1.9E-06 46.9 6.5 41 193-233 44-90 (367)
362 1gwn_A RHO-related GTP-binding 94.7 0.014 4.8E-07 47.5 2.5 22 195-216 30-51 (205)
363 3ozx_A RNAse L inhibitor; ATP 94.7 0.01 3.4E-07 56.4 1.8 33 185-217 14-49 (538)
364 3cbq_A GTP-binding protein REM 94.7 0.011 3.9E-07 47.6 1.9 21 195-215 25-45 (195)
365 1u0l_A Probable GTPase ENGC; p 94.7 0.013 4.6E-07 51.1 2.4 24 194-217 170-193 (301)
366 3oes_A GTPase rhebl1; small GT 94.7 0.015 5E-07 46.8 2.5 23 194-216 25-47 (201)
367 2gf0_A GTP-binding protein DI- 94.7 0.015 5.2E-07 46.2 2.6 24 192-215 7-30 (199)
368 1t6n_A Probable ATP-dependent 94.7 0.056 1.9E-06 44.0 6.1 41 193-233 51-98 (220)
369 2fu5_C RAS-related protein RAB 94.6 0.0099 3.4E-07 46.7 1.3 24 193-216 8-31 (183)
370 1zj6_A ADP-ribosylation factor 94.6 0.016 5.4E-07 45.9 2.5 23 193-215 16-38 (187)
371 2pl3_A Probable ATP-dependent 94.6 0.062 2.1E-06 44.3 6.2 19 193-211 62-80 (236)
372 2ew1_A RAS-related protein RAB 94.6 0.016 5.4E-07 47.1 2.5 22 195-216 28-49 (201)
373 4bas_A ADP-ribosylation factor 94.6 0.013 4.5E-07 46.5 2.0 23 194-216 18-40 (199)
374 3qf7_A RAD50; ABC-ATPase, ATPa 94.6 0.011 3.6E-07 53.3 1.5 25 192-216 21-46 (365)
375 2q3h_A RAS homolog gene family 94.6 0.017 5.7E-07 46.2 2.6 23 194-216 21-43 (201)
376 1yrb_A ATP(GTP)binding protein 94.5 0.021 7.1E-07 47.9 3.2 23 195-217 16-38 (262)
377 2o52_A RAS-related protein RAB 94.5 0.016 5.6E-07 46.6 2.4 22 194-215 26-47 (200)
378 3qkt_A DNA double-strand break 94.5 0.0077 2.6E-07 53.4 0.4 22 196-217 26-47 (339)
379 2atx_A Small GTP binding prote 94.5 0.018 6.1E-07 45.8 2.6 22 195-216 20-41 (194)
380 2h57_A ADP-ribosylation factor 94.5 0.014 4.7E-07 46.4 1.9 23 195-217 23-45 (190)
381 3b5x_A Lipid A export ATP-bind 94.4 0.016 5.5E-07 55.2 2.6 38 191-228 367-406 (582)
382 2f7s_A C25KG, RAS-related prot 94.4 0.019 6.4E-07 46.6 2.7 22 195-216 27-48 (217)
383 2il1_A RAB12; G-protein, GDP, 94.4 0.016 5.5E-07 46.3 2.2 21 196-216 29-49 (192)
384 3l0o_A Transcription terminati 94.4 0.026 8.8E-07 51.8 3.7 24 194-217 176-199 (427)
385 2qu8_A Putative nucleolar GTP- 94.4 0.018 6.3E-07 47.4 2.5 23 194-216 30-52 (228)
386 2yv5_A YJEQ protein; hydrolase 94.4 0.019 6.4E-07 50.3 2.7 23 194-217 166-188 (302)
387 2h17_A ADP-ribosylation factor 94.4 0.016 5.4E-07 45.7 2.0 22 195-216 23-44 (181)
388 3qks_A DNA double-strand break 94.4 0.02 7E-07 47.0 2.7 25 195-219 25-49 (203)
389 2j1l_A RHO-related GTP-binding 94.3 0.019 6.4E-07 46.8 2.4 21 195-215 36-56 (214)
390 2fv8_A H6, RHO-related GTP-bin 94.3 0.02 6.8E-07 46.3 2.6 22 195-216 27-48 (207)
391 3b60_A Lipid A export ATP-bind 94.3 0.019 6.5E-07 54.7 2.8 38 190-227 366-405 (582)
392 2hup_A RAS-related protein RAB 94.3 0.02 7E-07 46.2 2.6 22 195-216 31-52 (201)
393 3llu_A RAS-related GTP-binding 94.3 0.02 7E-07 45.8 2.5 22 195-216 22-43 (196)
394 3euj_A Chromosome partition pr 94.2 0.022 7.6E-07 53.4 3.0 27 190-217 27-53 (483)
395 2gco_A H9, RHO-related GTP-bin 94.2 0.021 7.2E-07 45.9 2.5 22 195-216 27-48 (201)
396 2j0v_A RAC-like GTP-binding pr 94.2 0.021 7.3E-07 46.1 2.5 23 194-216 10-32 (212)
397 2o5v_A DNA replication and rep 94.2 0.011 3.9E-07 53.2 0.9 28 190-217 22-50 (359)
398 2www_A Methylmalonic aciduria 94.2 0.022 7.5E-07 50.9 2.8 23 195-217 76-98 (349)
399 1sky_E F1-ATPase, F1-ATP synth 94.2 0.017 5.8E-07 54.0 2.1 26 193-218 151-176 (473)
400 2x77_A ADP-ribosylation factor 94.2 0.02 6.9E-07 45.2 2.3 24 192-215 21-44 (189)
401 2qnr_A Septin-2, protein NEDD5 94.2 0.017 5.7E-07 50.6 1.9 21 196-216 21-41 (301)
402 3cpj_B GTP-binding protein YPT 94.2 0.024 8.3E-07 46.4 2.8 22 195-216 15-36 (223)
403 2yl4_A ATP-binding cassette SU 94.1 0.019 6.6E-07 54.8 2.5 38 190-227 367-406 (595)
404 1vt4_I APAF-1 related killer D 94.1 0.038 1.3E-06 56.7 4.6 43 162-216 131-173 (1221)
405 3qf4_B Uncharacterized ABC tra 94.1 0.023 7.8E-07 54.4 2.8 28 190-217 378-405 (598)
406 1t9h_A YLOQ, probable GTPase E 94.1 0.01 3.6E-07 52.4 0.4 26 192-217 172-197 (307)
407 1tq4_A IIGP1, interferon-induc 94.1 0.022 7.4E-07 52.4 2.6 23 195-217 71-93 (413)
408 4gzl_A RAS-related C3 botulinu 94.0 0.025 8.4E-07 45.8 2.5 22 194-215 31-52 (204)
409 3ozx_A RNAse L inhibitor; ATP 94.0 0.023 7.8E-07 53.9 2.6 26 192-217 293-318 (538)
410 2qag_C Septin-7; cell cycle, c 94.0 0.023 7.9E-07 52.2 2.6 22 196-217 34-55 (418)
411 1yqt_A RNAse L inhibitor; ATP- 94.0 0.025 8.7E-07 53.5 2.8 26 192-217 311-336 (538)
412 3q3j_B RHO-related GTP-binding 93.9 0.028 9.6E-07 45.9 2.7 22 195-216 29-50 (214)
413 2yc2_C IFT27, small RAB-relate 93.9 0.012 4.2E-07 47.0 0.4 22 195-216 22-43 (208)
414 1vec_A ATP-dependent RNA helic 93.9 0.045 1.5E-06 43.9 3.9 19 193-211 40-58 (206)
415 1ega_A Protein (GTP-binding pr 93.9 0.027 9.3E-07 49.1 2.7 22 195-216 10-31 (301)
416 1g5t_A COB(I)alamin adenosyltr 93.9 0.038 1.3E-06 45.7 3.4 24 194-217 28-52 (196)
417 3bk7_A ABC transporter ATP-bin 93.9 0.03 1E-06 53.9 3.2 26 192-217 116-141 (607)
418 3iev_A GTP-binding protein ERA 93.9 0.026 8.9E-07 49.3 2.5 25 192-216 8-33 (308)
419 3szr_A Interferon-induced GTP- 93.9 0.036 1.2E-06 53.3 3.7 32 185-217 34-69 (608)
420 3llm_A ATP-dependent RNA helic 93.8 0.033 1.1E-06 46.3 3.0 22 193-214 76-97 (235)
421 1xti_A Probable ATP-dependent 93.8 0.12 4.1E-06 45.4 6.7 41 193-233 45-92 (391)
422 4a82_A Cystic fibrosis transme 93.8 0.019 6.5E-07 54.7 1.6 38 190-227 364-403 (578)
423 3bor_A Human initiation factor 93.7 0.06 2.1E-06 44.7 4.5 19 193-211 67-85 (237)
424 2aka_B Dynamin-1; fusion prote 93.7 0.038 1.3E-06 47.2 3.3 23 195-217 28-50 (299)
425 2g3y_A GTP-binding protein GEM 93.7 0.033 1.1E-06 46.0 2.7 21 195-215 39-59 (211)
426 2xtp_A GTPase IMAP family memb 93.7 0.033 1.1E-06 46.9 2.8 23 194-216 23-45 (260)
427 2z0m_A 337AA long hypothetical 93.7 0.064 2.2E-06 46.0 4.6 40 194-233 32-72 (337)
428 1e9r_A Conjugal transfer prote 93.7 0.037 1.3E-06 50.3 3.3 41 194-234 54-98 (437)
429 2va8_A SSO2462, SKI2-type heli 93.6 0.053 1.8E-06 52.5 4.5 38 190-227 43-84 (715)
430 3j16_B RLI1P; ribosome recycli 93.6 0.038 1.3E-06 53.2 3.4 24 194-217 104-127 (608)
431 3qf4_A ABC transporter, ATP-bi 93.5 0.026 8.7E-07 54.0 2.0 29 190-218 366-394 (587)
432 3lxw_A GTPase IMAP family memb 93.5 0.036 1.2E-06 46.8 2.7 23 194-216 22-44 (247)
433 3bk7_A ABC transporter ATP-bin 93.5 0.033 1.1E-06 53.6 2.8 26 192-217 381-406 (607)
434 1w1w_A Structural maintenance 93.5 0.042 1.4E-06 50.1 3.4 27 193-219 26-52 (430)
435 3auy_A DNA double-strand break 93.4 0.015 5.2E-07 52.2 0.2 26 190-215 21-47 (371)
436 2qtf_A Protein HFLX, GTP-bindi 93.3 0.04 1.4E-06 49.6 2.8 23 195-217 181-203 (364)
437 3j16_B RLI1P; ribosome recycli 93.2 0.025 8.6E-07 54.5 1.5 22 196-217 381-402 (608)
438 4djt_A GTP-binding nuclear pro 93.2 0.019 6.3E-07 46.7 0.4 22 194-215 12-33 (218)
439 1mky_A Probable GTP-binding pr 93.2 0.041 1.4E-06 50.5 2.7 24 194-217 181-204 (439)
440 2oxc_A Probable ATP-dependent 93.2 0.18 6.2E-06 41.4 6.5 41 193-233 61-108 (230)
441 2e87_A Hypothetical protein PH 93.1 0.043 1.5E-06 48.9 2.7 24 194-217 168-191 (357)
442 1rif_A DAR protein, DNA helica 93.1 0.075 2.6E-06 45.3 4.1 41 195-235 130-175 (282)
443 4dhe_A Probable GTP-binding pr 92.9 0.031 1.1E-06 45.4 1.4 23 194-216 30-52 (223)
444 1wp9_A ATP-dependent RNA helic 92.9 0.079 2.7E-06 47.3 4.1 42 195-236 25-71 (494)
445 3th5_A RAS-related C3 botulinu 92.0 0.019 6.5E-07 46.1 0.0 21 195-215 32-52 (204)
446 1jwy_B Dynamin A GTPase domain 92.8 0.062 2.1E-06 46.3 3.2 22 195-216 26-47 (315)
447 1ni3_A YCHF GTPase, YCHF GTP-b 92.8 0.058 2E-06 49.2 3.1 22 194-215 21-42 (392)
448 4aby_A DNA repair protein RECN 92.8 0.02 7E-07 51.6 0.1 24 195-218 62-85 (415)
449 1w4r_A Thymidine kinase; type 92.7 0.066 2.3E-06 44.2 3.1 30 196-225 23-55 (195)
450 1e69_A Chromosome segregation 92.7 0.044 1.5E-06 48.1 2.2 23 195-217 26-48 (322)
451 3ber_A Probable ATP-dependent 92.7 0.1 3.5E-06 43.8 4.4 19 193-211 80-98 (249)
452 3gj0_A GTP-binding nuclear pro 92.7 0.03 1E-06 45.6 1.0 19 195-213 17-35 (221)
453 1q0u_A Bstdead; DEAD protein, 92.7 0.07 2.4E-06 43.5 3.3 18 194-211 42-59 (219)
454 2iw3_A Elongation factor 3A; a 92.6 0.048 1.6E-06 55.3 2.4 25 191-215 459-483 (986)
455 3pey_A ATP-dependent RNA helic 92.5 0.11 3.9E-06 45.4 4.6 21 192-212 43-63 (395)
456 3bfv_A CAPA1, CAPB2, membrane 92.4 0.09 3.1E-06 45.1 3.7 36 192-227 81-120 (271)
457 1s2m_A Putative ATP-dependent 92.4 0.18 6E-06 44.6 5.8 20 194-213 59-78 (400)
458 4dkx_A RAS-related protein RAB 92.3 0.068 2.3E-06 44.3 2.7 20 196-215 16-35 (216)
459 3vkw_A Replicase large subunit 92.3 0.096 3.3E-06 48.5 3.9 21 196-216 164-184 (446)
460 3cio_A ETK, tyrosine-protein k 92.3 0.085 2.9E-06 45.9 3.4 35 192-226 103-141 (299)
461 3h1t_A Type I site-specific re 92.3 0.14 4.7E-06 48.3 5.1 42 193-234 198-252 (590)
462 3iuy_A Probable ATP-dependent 92.2 0.14 4.9E-06 41.8 4.6 19 193-211 57-75 (228)
463 2qag_A Septin-2, protein NEDD5 92.1 0.061 2.1E-06 48.2 2.4 21 195-215 39-59 (361)
464 1xx6_A Thymidine kinase; NESG, 92.1 0.07 2.4E-06 43.7 2.5 25 193-217 8-32 (191)
465 3ug7_A Arsenical pump-driving 92.1 0.11 3.9E-06 46.1 4.1 34 192-225 24-61 (349)
466 1h65_A Chloroplast outer envel 92.1 0.069 2.4E-06 45.4 2.5 23 194-216 40-62 (270)
467 2iw3_A Elongation factor 3A; a 92.0 0.046 1.6E-06 55.4 1.5 28 190-217 696-723 (986)
468 2oca_A DAR protein, ATP-depend 92.0 0.22 7.4E-06 45.9 6.0 42 194-235 129-175 (510)
469 1ihu_A Arsenical pump-driving 91.9 0.1 3.5E-06 49.6 3.8 36 192-227 7-45 (589)
470 1udx_A The GTP-binding protein 91.8 0.057 2E-06 49.6 1.8 24 193-216 157-180 (416)
471 3tbk_A RIG-I helicase domain; 91.7 0.14 4.7E-06 47.1 4.4 42 194-235 20-70 (555)
472 1puj_A YLQF, conserved hypothe 91.7 0.21 7.2E-06 43.1 5.3 53 162-217 91-144 (282)
473 3cnl_A YLQF, putative uncharac 91.7 0.08 2.7E-06 45.3 2.5 24 194-217 100-123 (262)
474 3la6_A Tyrosine-protein kinase 91.7 0.15 5E-06 44.2 4.2 36 192-227 91-130 (286)
475 3lfu_A DNA helicase II; SF1 he 91.6 0.087 3E-06 50.1 2.9 19 194-212 23-41 (647)
476 3fe2_A Probable ATP-dependent 91.6 0.13 4.4E-06 42.7 3.6 19 193-211 66-84 (242)
477 3l0i_B RAS-related protein RAB 91.6 0.019 6.5E-07 46.0 -1.5 21 195-215 35-55 (199)
478 3t5d_A Septin-7; GTP-binding p 91.6 0.08 2.7E-06 45.1 2.4 21 194-214 9-29 (274)
479 1fuu_A Yeast initiation factor 91.4 0.13 4.6E-06 45.0 3.8 17 194-210 59-75 (394)
480 2ohf_A Protein OLA1, GTP-bindi 91.3 0.11 3.9E-06 47.3 3.3 24 193-216 22-45 (396)
481 3oiy_A Reverse gyrase helicase 91.3 0.34 1.2E-05 43.2 6.4 41 193-233 36-80 (414)
482 3end_A Light-independent proto 91.3 0.12 4.2E-06 44.5 3.4 36 192-227 40-78 (307)
483 2xau_A PRE-mRNA-splicing facto 91.3 0.13 4.3E-06 50.9 3.8 23 193-215 109-131 (773)
484 4a2p_A RIG-I, retinoic acid in 91.3 0.17 5.7E-06 46.7 4.4 42 194-235 23-73 (556)
485 3def_A T7I23.11 protein; chlor 91.2 0.098 3.3E-06 44.3 2.6 24 194-217 37-60 (262)
486 2zj8_A DNA helicase, putative 91.1 0.11 3.8E-06 50.4 3.1 37 191-227 37-77 (720)
487 3geh_A MNME, tRNA modification 91.1 0.2 6.9E-06 46.5 4.8 22 195-216 226-247 (462)
488 3zq6_A Putative arsenical pump 91.1 0.11 3.9E-06 45.5 3.0 31 196-226 17-50 (324)
489 1wrb_A DJVLGB; RNA helicase, D 91.1 0.18 6.2E-06 41.9 4.1 18 194-211 61-78 (253)
490 2i4i_A ATP-dependent RNA helic 91.0 0.29 9.9E-06 43.3 5.6 18 193-210 52-69 (417)
491 1wb9_A DNA mismatch repair pro 90.9 0.12 4.2E-06 51.2 3.2 23 194-216 608-630 (800)
492 3fht_A ATP-dependent RNA helic 90.9 0.16 5.5E-06 44.8 3.7 18 193-210 64-81 (412)
493 2qe7_A ATP synthase subunit al 90.8 0.17 5.8E-06 47.5 3.9 27 195-221 164-191 (502)
494 1zcb_A G alpha I/13; GTP-bindi 90.7 0.12 4.2E-06 46.4 2.9 23 192-214 32-54 (362)
495 2wkq_A NPH1-1, RAS-related C3 90.7 0.11 3.9E-06 44.6 2.5 24 192-215 154-177 (332)
496 3thx_B DNA mismatch repair pro 90.7 0.11 3.7E-06 52.4 2.6 23 193-215 673-695 (918)
497 3g5u_A MCG1178, multidrug resi 90.7 0.097 3.3E-06 54.5 2.4 37 190-226 413-451 (1284)
498 2j0s_A ATP-dependent RNA helic 90.6 0.3 1E-05 43.3 5.3 41 193-233 74-121 (410)
499 3vr4_A V-type sodium ATPase ca 90.6 0.18 6.1E-06 48.3 3.9 26 195-220 234-259 (600)
500 4f4c_A Multidrug resistance pr 90.5 0.12 4E-06 54.1 2.8 28 191-218 442-469 (1321)
No 1
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-42 Score=318.77 Aligned_cols=215 Identities=72% Similarity=1.107 Sum_probs=206.8
Q ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEe
Q 025979 31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRIL 110 (245)
Q Consensus 31 ~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 110 (245)
..+++.++++++++++.|..+.++++++...+++++..++++++.++.+|..++++.+.++..+++++++++.++++++.
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~ 123 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRIL 123 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEEEEEETTSCEEEECBC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCeeEEecCCCCEEEEecc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhcc
Q 025979 111 STINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGI 190 (245)
Q Consensus 111 ~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~ 190 (245)
+.++...+++|..+.++..+..+..++|.+.++.++.+...+.|+++|+||+|+++++++|.+.|.+|+.+|+.|.++|+
T Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~ 203 (428)
T 4b4t_K 124 STLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI 203 (428)
T ss_dssp SSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_pred ccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
.+|+|+|||||||||||++|+|+|++++++|+.+++++++++|+|+++++||++|
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF 258 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVF 258 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=313.45 Aligned_cols=211 Identities=35% Similarity=0.585 Sum_probs=201.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeeccc
Q 025979 35 YSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTIN 114 (245)
Q Consensus 35 ~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (245)
..++.+++.++....++...++.+.+.++++...++++++.++.+|..++++.+.+++.+++++.+++.++++.+.+.++
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~ 103 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDIN 103 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESSSCEEEECCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCCCCEEEEecccccC
Confidence 35677888888777788888888888888889999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCc
Q 025979 115 RELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR 194 (245)
Q Consensus 115 ~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~ 194 (245)
...+++|.+|.++.++..+..++|+..++.+..+...+.|+++|+||+|+++++++|++.|.+|+.+|++|.++|+.+|+
T Consensus 104 ~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr 183 (405)
T 4b4t_J 104 VKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK 183 (405)
T ss_dssp TTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC
T ss_pred HhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
|+|||||||||||++|+|+|++++++|+.+++++++++|+|+++++||++|
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF 234 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELF 234 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=314.87 Aligned_cols=232 Identities=43% Similarity=0.731 Sum_probs=185.0
Q ss_pred CCCCCCcccCCCCCCCC------------chhHHHHHHHHHHHhhhhhhhHHHHHHH--HHHHHHHHHHHHHHhhhhccc
Q 025979 14 SEPPPSTRSDLTEQWSD------------EDDLYSRLKSLQRQLEFIDIQEEYVKDE--QKNLKRELLRAQEEVKRIQSV 79 (245)
Q Consensus 14 ~e~~~~~~~e~~~~~~~------------~~~~~~~~~~~~~e~~~l~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (245)
.|+|...++....+... ..+|+-++.++++...+|..+.++++.+ ++..+++..+.++++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (437)
T 4b4t_I 23 YEPPVQSKFGRKKRKGGPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGN 102 (437)
T ss_dssp ----------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCccccccccCCCCcchhhcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHhhcCC
Confidence 77777776654433311 3355667778888888888777777766 356777788889999999999
Q ss_pred cchhhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceec
Q 025979 80 PLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYN 159 (245)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
|..+|++.+.++..+++|+++++.+|++.+.++++...+.||.+|.++..+..+.+++|+..++.++.|...+.|+++|+
T Consensus 103 p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~ 182 (437)
T 4b4t_I 103 PLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYS 182 (437)
T ss_dssp SEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGG
T ss_pred CceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccc
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWL 239 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~ 239 (245)
||+|+++++++|.+.|.+|+.+|+.|..+|+.+|+|+|||||||||||++|+|+|++++++|+.+++++++++|+|++++
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek 262 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPR 262 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 025979 240 KHKQIF 245 (245)
Q Consensus 240 ~vr~iF 245 (245)
+||++|
T Consensus 263 ~ir~lF 268 (437)
T 4b4t_I 263 LCRQIF 268 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=303.69 Aligned_cols=215 Identities=31% Similarity=0.601 Sum_probs=189.6
Q ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcc-----------------
Q 025979 31 EDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQN----------------- 93 (245)
Q Consensus 31 ~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------- 93 (245)
.++++.+.+.++.++..++.+..+++.+...+++++..++++++..+.+|..++.+.+.++..
T Consensus 27 ~~~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~ 106 (434)
T 4b4t_M 27 TQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNV 106 (434)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCEEEECCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhh
Confidence 345566777788888888999999999999999999999999999999999999888877642
Q ss_pred ---------cceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcc
Q 025979 94 ---------NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGC 164 (245)
Q Consensus 94 ---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl 164 (245)
.++++++++.++++.+.+.++...++||.+|.++.++..+.+++|+..++.+..|...+.|+++|+||+|+
T Consensus 107 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl 186 (434)
T 4b4t_M 107 NLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGL 186 (434)
T ss_dssp ------CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSC
T ss_pred hhhhcccCceEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhcccccccccc
Q 025979 165 DIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQI 244 (245)
Q Consensus 165 ~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~i 244 (245)
++++++|.+.|.+|+.+|+.|.++|+.+|+|+|||||||||||++|+|+|++++++|+.+++++++++|+|++++++|.+
T Consensus 187 ~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~l 266 (434)
T 4b4t_M 187 DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDA 266 (434)
T ss_dssp HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 025979 245 F 245 (245)
Q Consensus 245 F 245 (245)
|
T Consensus 267 F 267 (434)
T 4b4t_M 267 F 267 (434)
T ss_dssp H
T ss_pred H
Confidence 7
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-39 Score=302.80 Aligned_cols=202 Identities=35% Similarity=0.605 Sum_probs=189.6
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCce
Q 025979 44 QLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSAS 123 (245)
Q Consensus 44 e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (245)
+...++.+++.++.+...+++++.+.+++++.++.+|..+|++.+.+++.+.++.+++|+++++++.+.++...+.+|.+
T Consensus 66 ~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~ 145 (437)
T 4b4t_L 66 EHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVR 145 (437)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCce
Confidence 33445566666777777777888888899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCC
Q 025979 124 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPG 203 (245)
Q Consensus 124 v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPG 203 (245)
|.++..+..+..++|+..++.+..+...+.|+++|+||+|+++++++|++.|.+|+.+|++|.++|+.+|+|+|||||||
T Consensus 146 v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPG 225 (437)
T 4b4t_L 146 VTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPG 225 (437)
T ss_dssp EEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTT
T ss_pred eeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 204 TGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 204 tGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
||||++|+|+|++++++|+.+++++++++|+|++++++|.+|
T Consensus 226 tGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F 267 (437)
T 4b4t_L 226 TGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMF 267 (437)
T ss_dssp SSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-36 Score=278.19 Aligned_cols=155 Identities=43% Similarity=0.752 Sum_probs=150.8
Q ss_pred hcccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCCCCCceeccCCcchhhhHH
Q 025979 91 DQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQE 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~dv~Gl~~~~~~ 170 (245)
+..+.++..+++.+|++.+.+.++...++||.+|.++.++..+..++|+..|+.+..|...+.|+++|+||+|+++++++
T Consensus 141 ~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~ 220 (467)
T 4b4t_H 141 EDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEK 220 (467)
T ss_dssp CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHH
T ss_pred CCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 171 IREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 171 i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
|++.|.+|+.+|++|.++|+.+|+|+|||||||||||++|+|+|++++++|+.+++++++++|+|++++++|++|
T Consensus 221 L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF 295 (467)
T 4b4t_H 221 LREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF 295 (467)
T ss_dssp HHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.85 E-value=1.7e-22 Score=200.36 Aligned_cols=95 Identities=44% Similarity=0.833 Sum_probs=92.5
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.|+++|+|++|++++++.|.+.|.+|+.+|+.|.++|+.+++|+|||||||||||++|+|+|++++.+|+.+++++++
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|+++++||++|
T Consensus 549 s~~vGese~~vr~lF 563 (806)
T 3cf2_A 549 TMWFGESEANVREIF 563 (806)
T ss_dssp TTTCSSCHHHHHHHH
T ss_pred ccccchHHHHHHHHH
Confidence 999999999999988
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.85 E-value=1.4e-22 Score=200.82 Aligned_cols=95 Identities=52% Similarity=0.898 Sum_probs=92.0
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...++++|+||+|+++++++|++.|.+|+.+|++|..+|+.+|+|||||||||||||++|+++|++++.+|+.+++++++
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|++++++|++|
T Consensus 276 sk~~gese~~lr~lF 290 (806)
T 3cf2_A 276 SKLAGESESNLRKAF 290 (806)
T ss_dssp SSCTTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH
Confidence 999999999999987
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.79 E-value=5.7e-20 Score=162.99 Aligned_cols=94 Identities=45% Similarity=0.846 Sum_probs=90.3
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
+.|.++|+|++|++.+++.|.+.+..|+.+|+.|..+|+.+++++|||||||||||++|+++|+.++.+|+.++++++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccC
Q 025979 232 KYLGEVWLKHKQIF 245 (245)
Q Consensus 232 ~~~Ge~~~~vr~iF 245 (245)
+|+|++++.++.+|
T Consensus 88 ~~~g~~~~~~~~~f 101 (301)
T 3cf0_A 88 MWFGESEANVREIF 101 (301)
T ss_dssp HHHTTCTTHHHHHH
T ss_pred hhcCchHHHHHHHH
Confidence 99999999888765
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.77 E-value=2.9e-20 Score=163.40 Aligned_cols=94 Identities=43% Similarity=0.728 Sum_probs=82.1
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
+.|+++|+||+|+++++++|.+.+..|+.+++.|..+|+.+++|++|+||||||||++++++|+.++.+++.++++++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccC
Q 025979 232 KYLGEVWLKHKQIF 245 (245)
Q Consensus 232 ~~~Ge~~~~vr~iF 245 (245)
+|+|++++.|+.+|
T Consensus 83 ~~~~~~~~~i~~vf 96 (274)
T 2x8a_A 83 MYVGESERAVRQVF 96 (274)
T ss_dssp STTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 99999998888775
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.2e-19 Score=162.71 Aligned_cols=93 Identities=42% Similarity=0.751 Sum_probs=86.7
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-cceeeeechhHHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVVGSEFV 230 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-~~~~~~v~~s~l~ 230 (245)
+.|.++|+||+|++++++.|.+.+.+|+.++++|.. +..+++|+|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 568899999999999999999999999999999874 36788999999999999999999999999 9999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|++++.++.+|
T Consensus 84 ~~~~g~~~~~~~~lf 98 (322)
T 1xwi_A 84 SKWLGESEKLVKNLF 98 (322)
T ss_dssp CSSCCSCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHH
Confidence 999999999998876
No 12
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.74 E-value=3.1e-19 Score=159.52 Aligned_cols=94 Identities=46% Similarity=0.781 Sum_probs=87.7
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.|+++|+|++|++.+++.|.+++..|+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 4678899999999999999999999999999998876 557889999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|++++.++.+|
T Consensus 89 ~~~~g~~~~~~~~~f 103 (322)
T 3eie_A 89 SKWMGESEKLVKQLF 103 (322)
T ss_dssp TTTGGGHHHHHHHHH
T ss_pred hcccchHHHHHHHHH
Confidence 999999999988776
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.71 E-value=1.4e-18 Score=157.78 Aligned_cols=94 Identities=46% Similarity=0.781 Sum_probs=82.2
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.+.++|+||+|++.+++.|.+.+..|+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 4567899999999999999999999999999999886 567889999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|++++.++.+|
T Consensus 122 ~~~~g~~~~~~~~~f 136 (355)
T 2qp9_X 122 SKWMGESEKLVKQLF 136 (355)
T ss_dssp SCC---CHHHHHHHH
T ss_pred hhhcchHHHHHHHHH
Confidence 999999999888765
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=1.5e-18 Score=151.23 Aligned_cols=98 Identities=62% Similarity=1.052 Sum_probs=90.9
Q ss_pred cccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 148 LSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 148 ~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+...+.++++|++++|++.+++.|.+++..++.+++.+..+|+.+++++|||||||||||++|+++|+.++.+|+.++++
T Consensus 6 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~ 85 (285)
T 3h4m_A 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGS 85 (285)
T ss_dssp EEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccccC
Q 025979 228 EFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 228 ~l~~~~~Ge~~~~vr~iF 245 (245)
++...|.|+++..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~ 103 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIF 103 (285)
T ss_dssp GGCCCSTTHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHH
Confidence 999999999888777654
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.70 E-value=5.1e-18 Score=158.46 Aligned_cols=95 Identities=41% Similarity=0.724 Sum_probs=78.4
Q ss_pred cCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-cceeeeechhH
Q 025979 150 QSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVVGSE 228 (245)
Q Consensus 150 ~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-~~~~~~v~~s~ 228 (245)
..+.+.++|+||+|++.+++.|.+.+..|+.++++|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34678899999999999999999999999999988874 45678999999999999999999999999 99999999999
Q ss_pred HHHHHhccccccccccC
Q 025979 229 FVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 229 l~~~~~Ge~~~~vr~iF 245 (245)
++++|+|++++.++.+|
T Consensus 204 l~~~~~g~~~~~~~~~f 220 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLF 220 (444)
T ss_dssp --------CCCTHHHHH
T ss_pred HHhhhcchHHHHHHHHH
Confidence 99999999999998876
No 16
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.66 E-value=2.7e-17 Score=142.21 Aligned_cols=93 Identities=42% Similarity=0.749 Sum_probs=86.6
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
+.++++|++++|.+.+++.+.+.+.. +.+++.|..+|...++|+|||||||||||++|+++|+.++.+|+.++++++.+
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45678999999999999999998876 88899999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccC
Q 025979 232 KYLGEVWLKHKQIF 245 (245)
Q Consensus 232 ~~~Ge~~~~vr~iF 245 (245)
.|.|.++..++.+|
T Consensus 83 ~~~~~~~~~~~~~~ 96 (268)
T 2r62_A 83 MFVGLGASRVRDLF 96 (268)
T ss_dssp SCSSSCSSSSSTTH
T ss_pred hhcchHHHHHHHHH
Confidence 99999988887765
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=1.2e-17 Score=143.81 Aligned_cols=94 Identities=38% Similarity=0.745 Sum_probs=80.9
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.+..+|+|++|++.+++.+.+.+.. +.+++.|..+|...++|+|||||||||||++|+++|+.++.+|+.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 345678999999999999999998876 7788888999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
+.|.|++++.++.+|
T Consensus 83 ~~~~~~~~~~~~~~~ 97 (257)
T 1lv7_A 83 EMFVGVGASRVRDMF 97 (257)
T ss_dssp TSCCCCCHHHHHHHH
T ss_pred HHhhhhhHHHHHHHH
Confidence 999999888877665
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.65 E-value=1.2e-17 Score=143.19 Aligned_cols=91 Identities=40% Similarity=0.667 Sum_probs=77.3
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~ 233 (245)
|+++|++++|++.+++.+.+.+.. +.+++.|..+|+.+++++|||||||||||++|+++|+.++.+|+.++++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999999876 7788888999999999999999999999999999999999999999999999888
Q ss_pred hccccccccccC
Q 025979 234 LGEVWLKHKQIF 245 (245)
Q Consensus 234 ~Ge~~~~vr~iF 245 (245)
.|+++..++.+|
T Consensus 80 ~~~~~~~~~~~~ 91 (262)
T 2qz4_A 80 GGLGAARVRSLF 91 (262)
T ss_dssp TTHHHHHHHHHH
T ss_pred cChhHHHHHHHH
Confidence 888877776554
No 19
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.65 E-value=3e-17 Score=154.60 Aligned_cols=92 Identities=39% Similarity=0.771 Sum_probs=86.5
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
.+.++|+||+|++++++++.+.+.. +.++..|.++|...|+|+||+||||||||++|+++|++++.+|+.++++++.++
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999999886 778899999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccC
Q 025979 233 YLGEVWLKHKQIF 245 (245)
Q Consensus 233 ~~Ge~~~~vr~iF 245 (245)
|+|.++..+|.+|
T Consensus 89 ~~g~~~~~~r~lf 101 (476)
T 2ce7_A 89 FVGVGAARVRDLF 101 (476)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHH
Confidence 9999998888765
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.65 E-value=4.2e-17 Score=154.16 Aligned_cols=92 Identities=53% Similarity=0.933 Sum_probs=87.7
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~ 233 (245)
+.++|++++|++.+++.|.+.+..++.+++.|..+|..+++++|||||||||||++|+++|+.++.+|+.++++++.++|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccC
Q 025979 234 LGEVWLKHKQIF 245 (245)
Q Consensus 234 ~Ge~~~~vr~iF 245 (245)
.|+++..++.+|
T Consensus 279 ~g~~~~~~~~~f 290 (489)
T 3hu3_A 279 AGESESNLRKAF 290 (489)
T ss_dssp TTHHHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 999988887765
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.62 E-value=4.7e-17 Score=142.68 Aligned_cols=93 Identities=38% Similarity=0.713 Sum_probs=84.0
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
+.++++|++++|.+.+++.+.+.+..|..++++|..++ .+++++|||||||||||++|+++|+.++.+|+.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 45778999999999999999999999988888887665 46789999999999999999999999999999999999999
Q ss_pred HHhccccccccccC
Q 025979 232 KYLGEVWLKHKQIF 245 (245)
Q Consensus 232 ~~~Ge~~~~vr~iF 245 (245)
+|.|+++..++.+|
T Consensus 93 ~~~~~~~~~~~~~~ 106 (297)
T 3b9p_A 93 KYVGDGEKLVRALF 106 (297)
T ss_dssp SSCSCHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 99998887777654
No 22
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.61 E-value=9.2e-17 Score=145.67 Aligned_cols=94 Identities=34% Similarity=0.732 Sum_probs=85.4
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...+.++|++++|++.+++.|.+.+..|+.+++.|...+ .+++++|||||||||||++|+++|+.++.+|+.++++++.
T Consensus 76 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT 154 (357)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhh
Confidence 345788999999999999999999999888888887665 6789999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|.|+++..++.+|
T Consensus 155 ~~~~g~~~~~~~~~~ 169 (357)
T 3d8b_A 155 SKWVGEGEKMVRALF 169 (357)
T ss_dssp CSSTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHH
Confidence 999999888877664
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.60 E-value=2.1e-16 Score=144.53 Aligned_cols=94 Identities=41% Similarity=0.726 Sum_probs=78.7
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
...+.++|++++|++.+++.|.+++..+..++++|..++ .+++++|||||||||||++|+++|..++.+|+.++++++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 345678999999999999999999999888888888776 4678999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
..|+|+++..++.+|
T Consensus 186 ~~~~g~~~~~~~~~~ 200 (389)
T 3vfd_A 186 SKYVGEGEKLVRALF 200 (389)
T ss_dssp ------CHHHHHHHH
T ss_pred ccccchHHHHHHHHH
Confidence 999999988887665
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.59 E-value=9.7e-17 Score=159.83 Aligned_cols=95 Identities=44% Similarity=0.833 Sum_probs=90.7
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.+.++|++++|++++++.+.+++.+|+.+++.|..+++.+++++|||||||||||++|+++|+.++.+|++++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
++|+|++++.++.+|
T Consensus 549 ~~~~g~~~~~i~~~f 563 (806)
T 1ypw_A 549 TMWFGESEANVREIF 563 (806)
T ss_dssp TCCTTTSSHHHHHHH
T ss_pred hhhcCccHHHHHHHH
Confidence 999999999998876
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.59 E-value=2.7e-16 Score=148.97 Aligned_cols=91 Identities=41% Similarity=0.773 Sum_probs=85.6
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~ 233 (245)
++++|+||+|+++++.++.+.+.. +.++..|..+|+..++|+|||||||||||+||+++|+.++.+|+.++++++.++|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999999876 6778889999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccC
Q 025979 234 LGEVWLKHKQIF 245 (245)
Q Consensus 234 ~Ge~~~~vr~iF 245 (245)
+|.+.+.++.+|
T Consensus 105 ~g~~~~~v~~lf 116 (499)
T 2dhr_A 105 VGVGAARVRDLF 116 (499)
T ss_dssp TTHHHHHHHHHT
T ss_pred hhhHHHHHHHHH
Confidence 999988888877
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.58 E-value=9.9e-16 Score=131.61 Aligned_cols=94 Identities=40% Similarity=0.765 Sum_probs=84.5
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+.|.++|++++|++.++.++.+.+.. +.++..+..+++..++|++|+||||||||++++++|+.++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 456789999999999999999988776 6678889999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccC
Q 025979 231 QKYLGEVWLKHKQIF 245 (245)
Q Consensus 231 ~~~~Ge~~~~vr~iF 245 (245)
+.+.|++.+.++.+|
T Consensus 87 ~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 87 EMFVGVGAARVRDLF 101 (254)
T ss_dssp HSCTTHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 988888777776554
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.58 E-value=3.1e-16 Score=156.23 Aligned_cols=93 Identities=52% Similarity=0.913 Sum_probs=88.9
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
.+.++|+||+|++.+++.|.+.+..|+.+|++|..+++.+++++|||||||||||++|+++|+.++.+|+.+++++++++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccC
Q 025979 233 YLGEVWLKHKQIF 245 (245)
Q Consensus 233 ~~Ge~~~~vr~iF 245 (245)
|.|+.+..++.+|
T Consensus 278 ~~g~~~~~l~~vf 290 (806)
T 1ypw_A 278 LAGESESNLRKAF 290 (806)
T ss_dssp STTHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 9999998888765
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.52 E-value=6.3e-15 Score=128.59 Aligned_cols=93 Identities=41% Similarity=0.768 Sum_probs=83.2
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
+.++++|++++|+++++.++.+.+.. +.++..+..+++..++|++|+||||||||++++++|..++.+++.++++++.+
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 44789999999999999999988775 66788889999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccC
Q 025979 232 KYLGEVWLKHKQIF 245 (245)
Q Consensus 232 ~~~Ge~~~~vr~iF 245 (245)
.+.|+..+.++.+|
T Consensus 112 ~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 112 MFVGVGAARVRDLF 125 (278)
T ss_dssp STTTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHH
Confidence 88888777766554
No 29
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.52 E-value=3.2e-15 Score=139.72 Aligned_cols=85 Identities=31% Similarity=0.355 Sum_probs=74.5
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc--ceeeeechhHH
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEF 229 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~s~l 229 (245)
..+...|++++|++++++.+.+++.. -..|..+++++|||||||||||++|+++|+.++ .+|+.++++++
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred cChhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 34667899999999999999888754 344667889999999999999999999999998 99999999999
Q ss_pred HHHHhccccccccccC
Q 025979 230 VQKYLGEVWLKHKQIF 245 (245)
Q Consensus 230 ~~~~~Ge~~~~vr~iF 245 (245)
.++|+|++++ ++++|
T Consensus 102 ~~~~~~~~~~-~~~~f 116 (456)
T 2c9o_A 102 YSTEIKKTEV-LMENF 116 (456)
T ss_dssp CCSSSCHHHH-HHHHH
T ss_pred HHHhhhhhHH-HHHHH
Confidence 9999999987 76655
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.47 E-value=4.2e-15 Score=131.32 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=51.4
Q ss_pred hccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhccccccccccC
Q 025979 188 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 188 ~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge~~~~vr~iF 245 (245)
.+.++|+|+|||||||||||++|+++|++++.+|++++++++.++|+|+++..++++|
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f 88 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRY 88 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999888765
No 31
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.45 E-value=5.3e-15 Score=141.33 Aligned_cols=150 Identities=20% Similarity=0.218 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccc
Q 025979 64 RELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADS 143 (245)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~ 143 (245)
.++.++++++++.+.++.....+.+++.+...+.+.+.+..+..++++|+ ..++|+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~--~~lp~~~~~~------------------ 67 (543)
T 3m6a_A 8 GEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWL--VALPWTDETD------------------ 67 (543)
T ss_dssp CTTTHHHHHHHSSSCCCHHHHHHHHHHHSSCCCSSSCTTTTHHHHHHHHH--HHSCSSCCCC------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCCCchHhHHHHHHHHH--hcCCCCcccc------------------
Confidence 35667888999999999999999999999988888888888878888776 2334432211
Q ss_pred cccccccCCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccC-CCcceeeecCCCCchHHHHHHHHhcccceee
Q 025979 144 SISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 222 (245)
Q Consensus 144 ~~~~~~~~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~-~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~ 222 (245)
..+...+.....+++++|++++++.+.+.+... .+... ++..+||+||||||||++|+++|..++.+|+
T Consensus 68 --~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~--------~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 68 --DKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQ--------KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp --CCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH--------HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred --ccccHHHHHHHHHHHhccHHHHHHHHHHHHHHH--------HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 111122334456789999999999998877642 22221 4456999999999999999999999999999
Q ss_pred eechhHHHH---------HHhccccccccc
Q 025979 223 RVVGSEFVQ---------KYLGEVWLKHKQ 243 (245)
Q Consensus 223 ~v~~s~l~~---------~~~Ge~~~~vr~ 243 (245)
+++++.+.. .|+|.....++.
T Consensus 138 ~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~ 167 (543)
T 3m6a_A 138 RISLGGVRDESEIRGHRRTYVGAMPGRIIQ 167 (543)
T ss_dssp EECCCC--------------------CHHH
T ss_pred EEEecccchhhhhhhHHHHHhccCchHHHH
Confidence 998876543 677777666554
No 32
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.42 E-value=3.3e-14 Score=132.69 Aligned_cols=88 Identities=26% Similarity=0.431 Sum_probs=72.0
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccC-CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH-HHhc
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLG 235 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~-~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~-~~~G 235 (245)
.++|+|++++++.+..++..++.++.++..++.. +++++||+||||||||++|+++|..++.+|+.++++.+.+ +|+|
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 3579999999999999997766666555444433 5688999999999999999999999999999999999998 6999
Q ss_pred c-ccccccccC
Q 025979 236 E-VWLKHKQIF 245 (245)
Q Consensus 236 e-~~~~vr~iF 245 (245)
+ ++..++++|
T Consensus 94 ~d~e~~lr~lf 104 (444)
T 1g41_A 94 KEVDSIIRDLT 104 (444)
T ss_dssp CCTHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 5 788888765
No 33
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.40 E-value=2.3e-13 Score=103.79 Aligned_cols=100 Identities=30% Similarity=0.477 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeeccc
Q 025979 51 QEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 130 (245)
Q Consensus 51 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~ 130 (245)
+++.++.+++.+++++..++++++.++++|..+|++.+.+++.++++++++|.+|++.+.+.++.+.|+||.+|+++.++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s 87 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQT 87 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcc
Confidence 34567777788888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcccccccccc
Q 025979 131 NALVDVLPPEADSSISLLSQ 150 (245)
Q Consensus 131 ~~~~~il~~~~~~~~~~~~~ 150 (245)
..+.+++|++.|+.++.|..
T Consensus 88 ~~Iv~iLp~e~Dp~V~~M~v 107 (109)
T 2wg5_A 88 LAIVNVLPTSKDPMVYGFEV 107 (109)
T ss_dssp CCEEEEEC------------
T ss_pred eEeEEeCCCCcCccchheEe
Confidence 99999999999999988764
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.32 E-value=2.1e-13 Score=119.64 Aligned_cols=86 Identities=27% Similarity=0.407 Sum_probs=71.9
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCc---ceeeecCCCCchHHHHHHHHhcccc-------eeeeechh
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR---GVLLYGPPGTGKTMLAKAVANHTTA-------AFIRVVGS 227 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~---gvLl~GPPGtGKT~lAkalA~~l~~-------~~~~v~~s 227 (245)
+.+++|++.+++.|.+.+..+. .+..+.+.|+.+++ ++|||||||||||++|+++|+.++. +|+.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3479999999999999998744 46777788876544 4999999999999999999998844 89999999
Q ss_pred HHHHHHhcccccccccc
Q 025979 228 EFVQKYLGEVWLKHKQI 244 (245)
Q Consensus 228 ~l~~~~~Ge~~~~vr~i 244 (245)
++.+.|+|.+...++.+
T Consensus 109 ~l~~~~~g~~~~~~~~~ 125 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEV 125 (309)
T ss_dssp GTCCSSTTCHHHHHHHH
T ss_pred HhhhhcccccHHHHHHH
Confidence 99999999877766554
No 35
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.31 E-value=2.5e-13 Score=134.17 Aligned_cols=177 Identities=21% Similarity=0.309 Sum_probs=101.6
Q ss_pred ccCCCCC---CCCCCCcccCCCCCCCCchhHHHHHHHHHHHhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 025979 7 VLDPKPV---SEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDI-----QEEYVKDEQKNLKRELLRAQEEVKRIQS 78 (245)
Q Consensus 7 ~~~~k~~---~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~l~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (245)
.+|||++ |++++..+......+.....+..++..++.+...+.. ....++.++..+++++..++..+.....
T Consensus 369 ~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 448 (758)
T 3pxi_A 369 FLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQG 448 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4688888 8888888888888888888888888877766644431 2223333333333333333322222110
Q ss_pred ccchhhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCCCccccccccccCC------
Q 025979 79 VPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSE------ 152 (245)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~~~~~~~~~~~~~~------ 152 (245)
.... ......+..++..|++.++..+...+
T Consensus 449 -------------~~~~-------------------------------~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~ 484 (758)
T 3pxi_A 449 -------------QENS-------------------------------EVTVDDIAMVVSSWTGVPVSKIAQTETDKLLN 484 (758)
T ss_dssp -------------CC----------------------------------CCTHHHHHHHHTTC-------CHHHHSCC-C
T ss_pred -------------ccCc-------------------------------ccCHHHHHHHHHHHhCCChHHhhHHHHHHHHH
Confidence 0000 00011111222222222222111111
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCC---Cc-ceeeecCCCCchHHHHHHHHhcc---cceeeeec
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP---PR-GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVV 225 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~---~~-gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~ 225 (245)
.......+++|++.+++.+.+.+.. .+.|+.. |. ++||+||||||||++|+++|+.+ +.+|++++
T Consensus 485 l~~~l~~~viGq~~a~~~l~~~i~~--------~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 485 MENILHSRVIGQDEAVVAVAKAVRR--------ARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHH--------HTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHhCcCcChHHHHHHHHHHHHH--------HHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 0112245799999999999999875 2233332 22 59999999999999999999997 78899999
Q ss_pred hhHHHHHHhc
Q 025979 226 GSEFVQKYLG 235 (245)
Q Consensus 226 ~s~l~~~~~G 235 (245)
++++.+.+.+
T Consensus 557 ~s~~~~~~~~ 566 (758)
T 3pxi_A 557 MSEYMEKHST 566 (758)
T ss_dssp GGGGCSSCCC
T ss_pred chhccccccc
Confidence 9999876654
No 36
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.21 E-value=1.5e-13 Score=137.58 Aligned_cols=93 Identities=26% Similarity=0.438 Sum_probs=65.6
Q ss_pred ccccccCCCccccccccccCCC------CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCC----cceeeecC
Q 025979 132 ALVDVLPPEADSSISLLSQSEK------PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP----RGVLLYGP 201 (245)
Q Consensus 132 ~~~~il~~~~~~~~~~~~~~~~------~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~----~gvLl~GP 201 (245)
.+..++..|.+.++..+...+. +...+++++|.+.+++.+...+.. .+.|+..| ..+||+||
T Consensus 525 ~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~--------~~~g~~~~~~p~~~vLl~Gp 596 (854)
T 1qvr_A 525 DIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRR--------ARAGLKDPNRPIGSFLFLGP 596 (854)
T ss_dssp HHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHH--------HGGGCSCSSSCSEEEEEBSC
T ss_pred HHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECC
Confidence 3444555565554443322111 123356899999999999998865 33444332 36999999
Q ss_pred CCCchHHHHHHHHhcc---cceeeeechhHHHHH
Q 025979 202 PGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 232 (245)
Q Consensus 202 PGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~ 232 (245)
||||||++|+++|..+ +.+|++++++++.+.
T Consensus 597 ~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 597 TGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp SSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred CCCCHHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 9999999999999998 889999999877543
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.18 E-value=4.4e-12 Score=114.60 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=59.4
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhh-hcc-CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH-HHhcc
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQ-IGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGE 236 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~-~g~-~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~-~~~Ge 236 (245)
.|+|++.+++.+..++............ .+. .+++++||+||||||||++|+++|+.++.+|+.++++++.. .|+|+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999988532211110000 011 25678999999999999999999999999999999999884 48887
Q ss_pred c
Q 025979 237 V 237 (245)
Q Consensus 237 ~ 237 (245)
+
T Consensus 96 ~ 96 (363)
T 3hws_A 96 D 96 (363)
T ss_dssp H
T ss_pred c
Confidence 6
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.12 E-value=8.5e-12 Score=108.85 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=59.1
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhh-ccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH-HHhcc
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQI-GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGE 236 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~-g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~-~~~Ge 236 (245)
++++|++.+++.+..++..+.....+.... +-..+.++||+||||||||++|+++|+.++.+|+.++++++.+ .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 469999999999998886532211111111 1135678999999999999999999999999999999998865 56664
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=1.3e-11 Score=117.09 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=64.2
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCC-CcHHHHhhhcc---CCCcceeeecCCCCchHHHHHHHHhcccceeeeech
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPL-THHELYKQIGI---DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 226 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~-~~~~~~~~~g~---~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~ 226 (245)
.+..+.+|++++|.+.+++.+.+.+.... .++..|...|. .+++++||+||||||||++|+++|++++.+++.+++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 34455689999999999999999987521 11222333333 256789999999999999999999999999999998
Q ss_pred hHHHHHHh
Q 025979 227 SEFVQKYL 234 (245)
Q Consensus 227 s~l~~~~~ 234 (245)
+++...++
T Consensus 111 s~~~~~~~ 118 (516)
T 1sxj_A 111 SDVRSKTL 118 (516)
T ss_dssp TSCCCHHH
T ss_pred CCcchHHH
Confidence 87654443
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.06 E-value=6.6e-11 Score=106.15 Aligned_cols=78 Identities=26% Similarity=0.352 Sum_probs=60.8
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc--eeeeechhHHH
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA--AFIRVVGSEFV 230 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~--~~~~v~~s~l~ 230 (245)
.|..+|++++|.+.+++.+...+.. -..|..+++++|||||||||||++|+++|+.++. +|+.+++.++.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~--------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEM--------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHH--------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 4566799999999998887665543 2224445688999999999999999999999874 88899888876
Q ss_pred HHHhcccc
Q 025979 231 QKYLGEVW 238 (245)
Q Consensus 231 ~~~~Ge~~ 238 (245)
+.+.+.++
T Consensus 110 ~~~~~~~~ 117 (368)
T 3uk6_A 110 SLEMSKTE 117 (368)
T ss_dssp CSSSCHHH
T ss_pred hcccchhH
Confidence 66665543
No 41
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.06 E-value=5.6e-11 Score=107.71 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=54.5
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHh----------------hhc-cCCCcceeeecCCCCchHHHHHHHHhccccee
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYK----------------QIG-IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 221 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~----------------~~g-~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~ 221 (245)
++|+|++.+++.|..++..++....... .-+ ..++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999999999988843222221100 001 13456799999999999999999999999999
Q ss_pred eeechhHHH-HHHhccc
Q 025979 222 IRVVGSEFV-QKYLGEV 237 (245)
Q Consensus 222 ~~v~~s~l~-~~~~Ge~ 237 (245)
+.++++.+. ..|.|+.
T Consensus 101 ~~~~~~~~~~~~~~g~~ 117 (376)
T 1um8_A 101 AISDATSLTEAGYVGED 117 (376)
T ss_dssp EEEEGGGCC--------
T ss_pred EEecchhhhhcCcCCcc
Confidence 999998875 5677764
No 42
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.05 E-value=2.2e-10 Score=101.83 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=55.7
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
..+|++++|.+..++.+...+.... ..-.++.++||+||||||||++|+++|+.++.+|+.++++.+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~--------~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAK--------KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHH--------HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHH--------hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 3478999999999999998886521 112355679999999999999999999999999999988654
No 43
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=99.04 E-value=1.5e-10 Score=84.28 Aligned_cols=76 Identities=29% Similarity=0.522 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeecccccccCCCceeeeeccccccccccCC
Q 025979 64 RELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 139 (245)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~il~~ 139 (245)
+++..++++++.++++|..+|++.+.+++.++++++++|++|++.+.++++.+.++||++|+++.++.++.+++|.
T Consensus 2 ~ev~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 2 KENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 3677889999999999999999999999999999999999999999999999999999999999999999999983
No 44
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.03 E-value=1.1e-10 Score=93.53 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=52.0
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeec
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVV 225 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~ 225 (245)
..+++++|.++.++.+.+.+.. ..+++++|+||||||||++|+++++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4578899999988888877643 245679999999999999999999986 68889999
Q ss_pred hhHHH
Q 025979 226 GSEFV 230 (245)
Q Consensus 226 ~s~l~ 230 (245)
++++.
T Consensus 86 ~~~~~ 90 (195)
T 1jbk_A 86 MGALV 90 (195)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88776
No 45
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.99 E-value=8.7e-10 Score=94.43 Aligned_cols=108 Identities=21% Similarity=0.285 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhcccceeecccCCeeEEEEeecccc
Q 025979 36 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 115 (245)
Q Consensus 36 ~~~~~~~~e~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (245)
.+++++++++..|..++.+|.++++.+++++.++++++++++++|..+++|.+.+++..+++. ++|.++++.+.+.++.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~ 132 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDA 132 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCH
Confidence 468899999999999999999999999999999999999999999999999999998888887 5889999999999999
Q ss_pred cccCCCceeeeeccccccccccCCCccccc
Q 025979 116 ELLKPSASVALHRHSNALVDVLPPEADSSI 145 (245)
Q Consensus 116 ~~l~~~~~v~~~~~~~~~~~il~~~~~~~~ 145 (245)
..|+||..|.++ ++..+++++|.+..-.+
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~~Gev 161 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEAVGEI 161 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCCCSEE
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCCcccE
Confidence 999999999996 68899999987654433
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.98 E-value=2.4e-10 Score=107.14 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=53.3
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeec
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVV 225 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~ 225 (245)
-.+++++|.+..++.+.+.+.. ....++||+||||||||++|+++|..+ +.+|+.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4578899999999998888764 234579999999999999999999986 78899999
Q ss_pred hhHHHHHHhccccccccccC
Q 025979 226 GSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 226 ~s~l~~~~~Ge~~~~vr~iF 245 (245)
++ .+|.|+.+..++.+|
T Consensus 244 ~~---~~~~g~~e~~~~~~~ 260 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVM 260 (468)
T ss_dssp ------------CTTHHHHH
T ss_pred CC---ccccchHHHHHHHHH
Confidence 88 788888877776654
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.96 E-value=1.9e-10 Score=92.27 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=52.0
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeec
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVV 225 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~ 225 (245)
..+++++|.+...+.+.+.+.. ..+++++|+||||||||++|+++++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 3567899999988888877643 235679999999999999999999987 78899998
Q ss_pred hhHHHH
Q 025979 226 GSEFVQ 231 (245)
Q Consensus 226 ~s~l~~ 231 (245)
++.+..
T Consensus 86 ~~~~~~ 91 (187)
T 2p65_A 86 LSSLIA 91 (187)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 887763
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.95 E-value=3.7e-10 Score=97.68 Aligned_cols=67 Identities=30% Similarity=0.379 Sum_probs=49.2
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
..+.|.+...+.+....... ...+...+..+++++|||||||||||++|+++|+.++.+|+.+++++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~ 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH
Confidence 45677777766666532110 11223334567788999999999999999999999999999998764
No 49
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.95 E-value=5.8e-11 Score=125.28 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCc----------HHHHhh------hccC----------CCcc--eeeecCCCC
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTH----------HELYKQ------IGID----------PPRG--VLLYGPPGT 204 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~----------~~~~~~------~g~~----------~~~g--vLl~GPPGt 204 (245)
.+.+.|+|++|++++++.+.+.+.+|+.+ ++.|+. .|+. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999998844 556665 3333 5677 999999999
Q ss_pred chHHHHHHHHhcccce-----eeeech--hHHH--------HHHhcc----ccccccccC
Q 025979 205 GKTMLAKAVANHTTAA-----FIRVVG--SEFV--------QKYLGE----VWLKHKQIF 245 (245)
Q Consensus 205 GKT~lAkalA~~l~~~-----~~~v~~--s~l~--------~~~~Ge----~~~~vr~iF 245 (245)
|||++|+++|.+.... |+.+.. ++++ ++|+|+ +|+.|+.+|
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~ 1153 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 1153 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHH
Confidence 9999999999877444 666655 5666 778888 888877654
No 50
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.90 E-value=6.4e-10 Score=109.76 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=54.4
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeec
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVV 225 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~ 225 (245)
-.+++++|.+..++++.+.+.. ..+.++|||||||||||++|+++|..+ +.+++.++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 4578899999999999888754 234579999999999999999999997 88899888
Q ss_pred hhHHHHHHhccccccccccC
Q 025979 226 GSEFVQKYLGEVWLKHKQIF 245 (245)
Q Consensus 226 ~s~l~~~~~Ge~~~~vr~iF 245 (245)
+ ..+|.|+.+..++.+|
T Consensus 244 ~---g~~~~G~~e~~l~~~~ 260 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVM 260 (758)
T ss_dssp ------------CTTHHHHH
T ss_pred c---cccccchHHHHHHHHH
Confidence 8 6778999998888765
No 51
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=1.2e-09 Score=96.19 Aligned_cols=68 Identities=31% Similarity=0.460 Sum_probs=54.7
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
...+|++++|.+..++.+.+.+... .. +-..+.++||+||||||||++|+++++.++.+|+.++++.+
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~-------~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAA-------KA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHH-------HH-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHH-------Hc-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 3457899999999999998887641 11 11355789999999999999999999999999998887643
No 52
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.85 E-value=7.5e-10 Score=87.21 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=48.4
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
+++|.+...+.+.+.+... ...+..+||+||||||||++|++++...+ +|+.++++++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~ 65 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID 65 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH
Confidence 5788888888888887641 12446799999999999999999999988 9999998887554
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.84 E-value=1.5e-09 Score=106.98 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=54.7
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCC----cceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPP----RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~----~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
.+++|++.+++.+..++.. .+.|+..+ ..+||+||||||||++|+++|..++.+|+++++++++++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcch
Confidence 4588999998888887754 44555422 359999999999999999999999999999999998764
No 54
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.81 E-value=4.7e-09 Score=92.72 Aligned_cols=64 Identities=27% Similarity=0.290 Sum_probs=54.4
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
.+.++++++|.+..++.+.+++.. -..++.+|++||||||||++|+++|+.++.+|+.+++++.
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 345789999999999999988873 1345668899999999999999999999999999997653
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.79 E-value=5e-09 Score=92.75 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=53.2
Q ss_pred CCceeccCC-cchh--hhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 154 PDVTYNDIG-GCDI--QKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 154 ~~~~~~dv~-Gl~~--~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
+..+|++++ |... ....+..++..+ -..+++++||||||||||++|+++++.+ +.+++.++++
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 455777875 4332 344444444432 1245679999999999999999999998 8999999999
Q ss_pred HHHHHHhccc
Q 025979 228 EFVQKYLGEV 237 (245)
Q Consensus 228 ~l~~~~~Ge~ 237 (245)
++...+.+..
T Consensus 75 ~~~~~~~~~~ 84 (324)
T 1l8q_A 75 DFAQAMVEHL 84 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987776643
No 56
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.78 E-value=5.1e-09 Score=90.03 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=46.0
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc---ceeeeechhHH
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEF 229 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~---~~~~~v~~s~l 229 (245)
.+|++++|.+.....+.+.+.... ..+..+||+||||||||++|+++++.+. .+|+.++++++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 467889999999888887775421 2346799999999999999999999874 68999998765
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.77 E-value=2.8e-09 Score=106.62 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=55.7
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeec
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVV 225 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~ 225 (245)
-.+++++|.+..+.++.+.+.. ..++++||+||||||||++|+++|+.+ +.+++.++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4678899999888888877643 245679999999999999999999987 88999999
Q ss_pred hhHHH--HHHhcccccccccc
Q 025979 226 GSEFV--QKYLGEVWLKHKQI 244 (245)
Q Consensus 226 ~s~l~--~~~~Ge~~~~vr~i 244 (245)
++.++ .+|.|+.+..++.+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~ 254 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAV 254 (854)
T ss_dssp C-----------CHHHHHHHH
T ss_pred hHHhhccCccchHHHHHHHHH
Confidence 99987 67888877766654
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.77 E-value=1e-08 Score=89.58 Aligned_cols=63 Identities=32% Similarity=0.522 Sum_probs=50.0
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccC----CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGID----PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~----~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
++++|.+.+++.+...+.. ...++. +...+||+||||||||++|+++|+.+ +.+|+.++++.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~--------~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRR--------ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHH--------HHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred hhcCCHHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 4688999999999988865 222222 22359999999999999999999988 567999988765
No 59
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.76 E-value=5.2e-09 Score=82.45 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=45.6
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
+++|.+...+.+.+.+... ...+..|||+||||||||++|++++... +.+|+ ++++.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 5678888888888777541 1234569999999999999999999987 77899 8887653
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.73 E-value=1.4e-08 Score=82.23 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=37.8
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeechhHHHHHHh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s~l~~~~~ 234 (245)
.+..+.+++|+||||||||++++++++.+ |..++.++..++++.+.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 34456789999999999999999999887 56778888888876654
No 61
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.73 E-value=9.1e-09 Score=96.03 Aligned_cols=60 Identities=28% Similarity=0.416 Sum_probs=50.3
Q ss_pred CceeccCCcchhhh---HHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 155 DVTYNDIGGCDIQK---QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~---~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
..++++++|.+..+ ..+...+.. ....++|||||||||||++|+++|+.++.+|+.++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 35688999999988 677777654 1235799999999999999999999999999998864
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.69 E-value=1e-08 Score=90.86 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=46.1
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeech
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 226 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~ 226 (245)
++++.|.+..++.+...+.. +.++|||||||||||++|+++|+.++.+|+++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 45789999888888766543 2579999999999999999999999999998876
No 63
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.67 E-value=2.6e-08 Score=81.37 Aligned_cols=61 Identities=34% Similarity=0.418 Sum_probs=48.3
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-----cceeeeechh
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGS 227 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s 227 (245)
+...+++++|.+..++.+.+.+... .+..++|+||||||||++|+++++.+ ...++.++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 4456889999999999999887641 22349999999999999999999876 4557777654
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.66 E-value=6.4e-09 Score=102.42 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=58.5
Q ss_pred ceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeec
Q 025979 156 VTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVV 225 (245)
Q Consensus 156 ~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~ 225 (245)
-.+++++|.+..++++.+.+.. ..+.++||+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 3578899999998888887654 245679999999999999999999987 67788888
Q ss_pred hhHHH--HHHhcccccccccc
Q 025979 226 GSEFV--QKYLGEVWLKHKQI 244 (245)
Q Consensus 226 ~s~l~--~~~~Ge~~~~vr~i 244 (245)
.+.+. .+|.|+.+..++.+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~ 270 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKAL 270 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHH
Confidence 88877 46777776665544
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.65 E-value=1.6e-08 Score=89.69 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=41.0
Q ss_pred CCCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 151 SEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 151 ~~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
...+..+|++++|.+..++.+...... ..+.++|||||||||||++|+++|+.++
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345667899999999877665433322 1224599999999999999999999886
No 66
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=2e-08 Score=88.95 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=49.0
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc------eeeeech
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA------AFIRVVG 226 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~------~~~~v~~ 226 (245)
..+.+|++++|.+++++.+...+... .+.++||+||||||||++|+++|+.++. .++.+++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 34457899999999999998887541 1233999999999999999999998753 4666665
Q ss_pred hH
Q 025979 227 SE 228 (245)
Q Consensus 227 s~ 228 (245)
++
T Consensus 98 ~~ 99 (353)
T 1sxj_D 98 SD 99 (353)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=2.2e-08 Score=87.20 Aligned_cols=63 Identities=33% Similarity=0.422 Sum_probs=49.3
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-----cceeeeechh
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGS 227 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s 227 (245)
..+.+|++++|.+..++.+...+.. | .. ..+|||||||||||++|+++|+.+ +.+|+.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-----------K-NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-----------T-CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-----------C-CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 4456789999999999988877653 1 12 239999999999999999999986 4567777765
Q ss_pred H
Q 025979 228 E 228 (245)
Q Consensus 228 ~ 228 (245)
+
T Consensus 78 ~ 78 (319)
T 2chq_A 78 D 78 (319)
T ss_dssp S
T ss_pred c
Confidence 4
No 68
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.62 E-value=3.4e-08 Score=88.27 Aligned_cols=64 Identities=28% Similarity=0.389 Sum_probs=48.4
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
++++++|.+.+++.+...+... ...-.++..++|+||||||||++|+++|+.+++++...+++.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~--------~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAA--------KMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHH--------HHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred cHHHccCcHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 6778889888888877666431 001134567999999999999999999999988877666543
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.60 E-value=5.1e-08 Score=81.19 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=46.1
Q ss_pred CCceeccCCcc---hhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc---ceeeeechh
Q 025979 154 PDVTYNDIGGC---DIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGS 227 (245)
Q Consensus 154 ~~~~~~dv~Gl---~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~---~~~~~v~~s 227 (245)
+..+|+++.|. ....+.+...+.. ..+++++|+||||||||++|+++++.+. .+++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34567787762 2445555544432 2457799999999999999999999874 677788877
Q ss_pred HHHH
Q 025979 228 EFVQ 231 (245)
Q Consensus 228 ~l~~ 231 (245)
++..
T Consensus 90 ~~~~ 93 (242)
T 3bos_A 90 IHAS 93 (242)
T ss_dssp GGGG
T ss_pred HHHH
Confidence 7654
No 70
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.59 E-value=9.8e-08 Score=78.41 Aligned_cols=42 Identities=31% Similarity=0.403 Sum_probs=36.2
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~~~~ 234 (245)
+++++|+||||||||++|+++++.+ +.+++.+++++++..+.
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 3789999999999999999999987 67788888888876654
No 71
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.59 E-value=4.2e-08 Score=87.49 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=50.6
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---------cceeeeechhH
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVGSE 228 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---------~~~~~~v~~s~ 228 (245)
.++++|.+...+.+...+...+. -..+++++|+||||||||++|+++++.+ +.+|+.+++..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 37899999999999888754221 1356789999999999999999999988 88899998653
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=5.6e-08 Score=84.94 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=49.2
Q ss_pred CCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc-----ceeeeechh
Q 025979 153 KPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGS 227 (245)
Q Consensus 153 ~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~-----~~~~~v~~s 227 (245)
..+.+|++++|.+..++.+...+.. | ....+|||||||||||++|+++|+.+. ..++.++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 3445788999999999999988754 1 223499999999999999999999863 347777765
Q ss_pred H
Q 025979 228 E 228 (245)
Q Consensus 228 ~ 228 (245)
+
T Consensus 86 ~ 86 (327)
T 1iqp_A 86 D 86 (327)
T ss_dssp C
T ss_pred c
Confidence 4
No 73
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.55 E-value=8.8e-08 Score=85.77 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=51.2
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-----------cceeeeech
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----------TAAFIRVVG 226 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-----------~~~~~~v~~ 226 (245)
.++++|.+..++.+.+.+..... -..+++++|+||||||||++|+++++.+ +.+++.+++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 37899999999999888754211 1356689999999999999999999987 889999987
Q ss_pred hHH
Q 025979 227 SEF 229 (245)
Q Consensus 227 s~l 229 (245)
++.
T Consensus 90 ~~~ 92 (384)
T 2qby_B 90 REV 92 (384)
T ss_dssp HHH
T ss_pred ccC
Confidence 653
No 74
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.53 E-value=7.7e-08 Score=89.42 Aligned_cols=72 Identities=22% Similarity=0.420 Sum_probs=51.7
Q ss_pred CCCceeccCC-cchhh--hHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-----cceeeee
Q 025979 153 KPDVTYNDIG-GCDIQ--KQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRV 224 (245)
Q Consensus 153 ~~~~~~~dv~-Gl~~~--~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v 224 (245)
.+..+|++++ |.... ...+..+...+ + . +++++||||||||||+||+++|+.+ +.+++.+
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 3556888876 64432 23333333221 1 1 5679999999999999999999988 7889999
Q ss_pred chhHHHHHHhcc
Q 025979 225 VGSEFVQKYLGE 236 (245)
Q Consensus 225 ~~s~l~~~~~Ge 236 (245)
+++++...+.+.
T Consensus 167 ~~~~~~~~~~~~ 178 (440)
T 2z4s_A 167 TSEKFLNDLVDS 178 (440)
T ss_dssp EHHHHHHHHHHH
T ss_pred eHHHHHHHHHHH
Confidence 999988777654
No 75
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.5e-08 Score=88.28 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=44.0
Q ss_pred CCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc----------cceeeeechhH
Q 025979 161 IGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSE 228 (245)
Q Consensus 161 v~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l----------~~~~~~v~~s~ 228 (245)
+.|-+++.+.|..++.. .+.-..+.+++||||||||||++++++++++ +..++.+++..
T Consensus 22 L~~Re~E~~~i~~~L~~---------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD---------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred cCCHHHHHHHHHHHHHH---------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 45556666666666543 2233577889999999999999999999998 35788888654
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=1.3e-07 Score=82.44 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=48.7
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc-----cceeeeechhH
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSE 228 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s~ 228 (245)
.+.++++++|.+..++.+...+.. + ..+. +|||||||||||++|+++|+.+ +..++.+++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 345678999999999999988754 1 2234 9999999999999999999986 45577776553
No 77
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.47 E-value=1.3e-07 Score=84.19 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=50.4
Q ss_pred eeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc------cceeeeechhH
Q 025979 157 TYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGSE 228 (245)
Q Consensus 157 ~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l------~~~~~~v~~s~ 228 (245)
..++++|.+...+.+.+.+...+. -..+..++|+||||||||++++++++.+ +.+++.+++..
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 347899999999999887654211 1345679999999999999999999988 78899988764
No 78
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.46 E-value=1.6e-07 Score=83.27 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=37.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhccc----ceeeeechhHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTT----AAFIRVVGSEFVQKYLG 235 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~----~~~~~v~~s~l~~~~~G 235 (245)
+.+++||||||||||+||+++|..+. .+++.+..++++..+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~ 198 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN 198 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHH
Confidence 57899999999999999999998765 67888899988876654
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.46 E-value=9.9e-08 Score=84.39 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=47.8
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
++++|.+...+.+.+.+... ...+..+||+||||||||++|++++... +.+|+.++++.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 46788888888888877642 1345679999999999999999999965 678999987654
No 80
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.40 E-value=2.4e-07 Score=76.22 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=43.4
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
....+++++|.+..++.+.+.+... ..++.++|+||||||||++++++++.++.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3446788999999999998887541 23457999999999999999999988754
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.37 E-value=2.2e-07 Score=87.84 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=35.8
Q ss_pred cCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 160 DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 160 dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.++|.+..++.+..++.. +.++||+||||||||++|+++|..++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 577888877776655432 257999999999999999999998843
No 82
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=3.3e-07 Score=81.62 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=46.1
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc-----ceeeeechh
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGS 227 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~-----~~~~~v~~s 227 (245)
.+.++++++|.+.+++.|...+.. | ..+. ++||||||||||++|+++|+.+. ..++.++.+
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------G-KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 445688999999999998888764 1 1233 99999999999999999999863 235555544
No 83
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=5e-07 Score=80.72 Aligned_cols=61 Identities=25% Similarity=0.232 Sum_probs=48.1
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCc--ceeeecCCCCchHHHHHHHHhcc----cceeeeechh
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPR--GVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGS 227 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~--gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s 227 (245)
.++++|.+...+.+.+.+.... .| ..+. .++|+||||||||++++++++.+ +..++.++++
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~--------~~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWL--------RN-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHH--------HS-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred CCCCCChHHHHHHHHHHHHHHH--------cC-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 3789999999999988875411 11 2334 79999999999999999999988 5778888754
No 84
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.35 E-value=3.6e-07 Score=81.45 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=43.5
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+.+|++++|.+..++.+...+... ..+..+||+||||||||++|+++|+.+++
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999887531 23456899999999999999999998754
No 85
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=3.7e-07 Score=81.12 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=41.9
Q ss_pred CCCCceeccCCcchhhhHHHHHHH-hcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAV-ELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i-~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+..+.++++++|.+.+++.+..++ .. | ..+. ++|+||||||||++++++|+.+
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 345567899999999988888776 22 1 2334 9999999999999999999964
No 86
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=6.4e-07 Score=73.74 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=34.5
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge 236 (245)
+.+++.++|.||||||||+++++||..++.+|+ +..++.....|.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i--~~d~~~~~~~g~ 66 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFI--DLDWYIEERFHK 66 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE--EHHHHHHHHHTS
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE--cchHHHHHHhCC
Confidence 345566999999999999999999999998885 555665555443
No 87
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.27 E-value=2e-07 Score=81.34 Aligned_cols=25 Identities=40% Similarity=0.680 Sum_probs=22.7
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++++||||||||||++|+|||+.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4579999999999999999999864
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.22 E-value=4.6e-07 Score=76.31 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=27.3
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccceeee
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 223 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~ 223 (245)
+...+++|||||||||||++|.++|+.+....+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 3344679999999999999999999988554443
No 89
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.11 E-value=2e-06 Score=69.59 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=34.0
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
+.++.-++|.||||+|||++++.||...+...+.+++.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 44455589999999999999999999988787888777664
No 90
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.00 E-value=3.1e-06 Score=68.09 Aligned_cols=33 Identities=39% Similarity=0.624 Sum_probs=28.6
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
.++.++|+||||+|||++++.+|..++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345699999999999999999999999887654
No 91
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.99 E-value=3.4e-06 Score=67.16 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=33.5
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 236 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~Ge 236 (245)
..++|.|+||||||++|+.||..++.+|+ +..++.....|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i--d~D~~~~~~~g~ 48 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL--DTDMIISERVGL 48 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE--EHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE--EChHHHHHHhCC
Confidence 45899999999999999999999999885 555666555554
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.99 E-value=2.6e-06 Score=67.58 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
+...++|+||+|+|||+|+++++..+ |...+.+++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 44669999999999999999999987 655667776654
No 93
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.99 E-value=4.8e-06 Score=76.02 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=31.9
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
++.+++.++|+||||+|||+++++++..++..++.+.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~ 201 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 201 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEe
Confidence 6677778999999999999999999998877776654
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.98 E-value=6e-06 Score=79.49 Aligned_cols=52 Identities=37% Similarity=0.534 Sum_probs=43.6
Q ss_pred CCCCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 152 EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 152 ~~~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+...+++++|.+.+++.+...+.. ...++|+||||||||++|+++|+.+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 44556789999999998888877653 25799999999999999999999884
No 95
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.97 E-value=1.7e-06 Score=83.45 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=26.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeee
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIR 223 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~ 223 (245)
++||+||||||||++|+++|+.++..++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 69999999999999999999999877655
No 96
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.94 E-value=1.1e-05 Score=72.60 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=45.5
Q ss_pred eccCCcchhhhHHHHHHH-hcCCCcHHHHhhhcc-CCCcceee--ecCCCCchHHHHHHHHhcc---------cceeeee
Q 025979 158 YNDIGGCDIQKQEIREAV-ELPLTHHELYKQIGI-DPPRGVLL--YGPPGTGKTMLAKAVANHT---------TAAFIRV 224 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i-~~~~~~~~~~~~~g~-~~~~gvLl--~GPPGtGKT~lAkalA~~l---------~~~~~~v 224 (245)
.++++|-+...+.+.+.+ .... .|. ..+..+++ +||||||||++++++++.+ +..++.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~--------~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLL--------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHH--------TSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHh--------cCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 367899999999998887 4311 011 23456889 9999999999999999876 4567777
Q ss_pred ch
Q 025979 225 VG 226 (245)
Q Consensus 225 ~~ 226 (245)
++
T Consensus 93 ~~ 94 (412)
T 1w5s_A 93 NA 94 (412)
T ss_dssp EG
T ss_pred EC
Confidence 75
No 97
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.93 E-value=5.1e-06 Score=67.48 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=29.3
Q ss_pred cceeeecCCCCchHHHHHHHHhc-ccceeeeechhHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH-TTAAFIRVVGSEFVQ 231 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~-l~~~~~~v~~s~l~~ 231 (245)
..++|+||||||||++++.+|.. +|.+|+ +.+++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~i--d~d~~~~ 47 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHL--EVGKLVK 47 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEE--EHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEe--eHHHHHH
Confidence 44999999999999999999999 788775 4444443
No 98
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=7.4e-06 Score=72.56 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=37.0
Q ss_pred cchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc------cceeeeechh
Q 025979 163 GCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGS 227 (245)
Q Consensus 163 Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l------~~~~~~v~~s 227 (245)
|.+++++.+..++... ....+|||||||||||++|+++|+.+ ...|+.++++
T Consensus 1 g~~~~~~~L~~~i~~~-------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred ChHHHHHHHHHHHHCC-------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 5667778888777641 13469999999999999999999864 3456666643
No 99
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.91 E-value=5.1e-06 Score=72.80 Aligned_cols=38 Identities=37% Similarity=0.581 Sum_probs=30.7
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
.|.-++|.||||+|||++|+.++..++..++.|++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34558999999999999999999988555666776555
No 100
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.89 E-value=5e-06 Score=67.33 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=29.7
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
.+.-++|.||||+|||++|+.||..++.+++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 4456999999999999999999999999887653
No 101
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.87 E-value=6.4e-06 Score=67.52 Aligned_cols=31 Identities=39% Similarity=0.522 Sum_probs=26.9
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
..|+|.||||+|||++|+.||..++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3488999999999999999999999877543
No 102
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.85 E-value=9.3e-07 Score=80.14 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=27.0
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeee
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIR 223 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~ 223 (245)
.++|+||||+|||+++++||..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 48999999999999999999999999865
No 103
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.84 E-value=1.3e-05 Score=71.43 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
.+.++|||||||||||++|+++|+.+.+
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 4567999999999999999999998753
No 104
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.83 E-value=1.3e-05 Score=67.66 Aligned_cols=41 Identities=12% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 233 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~ 233 (245)
..++-|+|.||||+|||+.|+.||..++.+. ++..+++-..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR~~ 67 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLRAE 67 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHHHH
Confidence 4556688999999999999999999998765 5666666543
No 105
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.83 E-value=7.4e-06 Score=70.08 Aligned_cols=39 Identities=26% Similarity=0.481 Sum_probs=32.8
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
..|..++|.||||+|||++|+.|+..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345569999999999999999999999876777777765
No 106
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.80 E-value=1e-05 Score=68.16 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=30.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
+..|+|.||||||||++|+.||..++.+++. ..+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 52 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDMLR 52 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHHH
Confidence 3459999999999999999999999987754 444443
No 107
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.80 E-value=8.8e-06 Score=66.00 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=27.1
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeee
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 223 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~ 223 (245)
+.-|+|.||||+|||++|+.||..++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4568999999999999999999999977654
No 108
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.78 E-value=1.2e-05 Score=65.96 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=27.7
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
++-|+|.||||+|||++|+.|+..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 35689999999999999999999998777543
No 109
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.76 E-value=3.1e-05 Score=67.81 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=43.5
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+......++|-+...+.|.+ +.. +.++++||+|+|||++++.+++.++..++.+++.
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 34455678888887777776 432 3689999999999999999999876666666654
No 110
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.75 E-value=1.4e-05 Score=65.41 Aligned_cols=36 Identities=14% Similarity=0.398 Sum_probs=29.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechhHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 231 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~ 231 (245)
+-|+|.||||||||++|+.|+..++.+++. .++++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~--~d~~~~ 51 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS--AGDLLR 51 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE--HHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe--HHHHHH
Confidence 448899999999999999999999877654 445544
No 111
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.72 E-value=1.5e-05 Score=67.85 Aligned_cols=38 Identities=16% Similarity=0.386 Sum_probs=30.7
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.+|..|+|.||||+|||++|+.|+..++.+++ +.++++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~ 64 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLL 64 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHH
Confidence 45667999999999999999999999987665 444444
No 112
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.72 E-value=1.7e-05 Score=63.30 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=27.8
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
.-++|.||||+|||++++.++..+|..++..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 45889999999999999999998888777654
No 113
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.71 E-value=1.6e-05 Score=68.48 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=33.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 234 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~~~ 234 (245)
...+.|.||||+|||++++.||..++++|+ +...+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~--d~d~~~~~~~ 87 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF--DCDTLIEQAM 87 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEE--EHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEE--eCcHHHHHHh
Confidence 456999999999999999999999998875 5556665554
No 114
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.67 E-value=2.8e-05 Score=63.83 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=29.6
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
++.-+.|.||+|+|||+++++||..+ |...+.+++.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 44558899999999999999999988 444346666655
No 115
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.66 E-value=2.6e-05 Score=63.99 Aligned_cols=36 Identities=39% Similarity=0.648 Sum_probs=28.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
++.-++|.||||+|||++++.|+..+|..++ ++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i--~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA--EADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE--EGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE--ccccc
Confidence 3445889999999999999999999876554 44443
No 116
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.66 E-value=7.2e-05 Score=65.36 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 154 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 154 ~~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+......++|-+...+.|.+.+.. | +.++++||+|+|||++++.+++..+ ++.+++.
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 334456789999888888877642 1 5699999999999999999999886 4444443
No 117
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.62 E-value=2e-05 Score=65.10 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=29.2
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeeeechhHHHHH
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 232 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~~~ 232 (245)
-+.|.|++|||||++|+.++..+|++++ ++.++...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~ 49 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHE 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHH
Confidence 3789999999999999999998888774 55555433
No 118
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.59 E-value=1.5e-05 Score=71.41 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=27.8
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcccce--eeee
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--FIRV 224 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~--~~~v 224 (245)
|+.+++.++|+||||||||+||.++|...+.+ |+.+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 44455558999999999999999999875444 5555
No 119
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.54 E-value=2.8e-05 Score=63.75 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=26.8
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
.+.-|+|.|+||||||++|+.|+..++.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 345589999999999999999999887654433
No 120
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.52 E-value=3.1e-05 Score=63.52 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceee
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 222 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~ 222 (245)
.+.-|+|.||||+|||++|+.|+..++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3456899999999999999999998755433
No 121
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=8.2e-05 Score=61.17 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+..++-++|.||||+|||++++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34556689999999999999999998873
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.51 E-value=4.8e-05 Score=64.41 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=25.7
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceee
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFI 222 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~ 222 (245)
+.-++|.||||+|||++++.||..+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456999999999999999999988876543
No 123
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.49 E-value=6.8e-05 Score=60.53 Aligned_cols=38 Identities=29% Similarity=0.240 Sum_probs=28.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhccc---ceeeeechhHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEFV 230 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~---~~~~~v~~s~l~ 230 (245)
+.-++|.|+||+|||++++.+|..++ ..++.+++..+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 34488999999999999999999884 334556655553
No 124
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.48 E-value=6.4e-05 Score=61.67 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=30.2
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
|+.++.-++++||||+|||++++.+|...+.+.+.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 466666699999999999999999998445566666543
No 125
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.43 E-value=7.7e-05 Score=67.08 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=29.8
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
+-+++.||+|||||+||..||..++..|+..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3588999999999999999999999988776643
No 126
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.43 E-value=0.00011 Score=60.63 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=30.4
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccc----ceeeeechhHH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTT----AAFIRVVGSEF 229 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~----~~~~~v~~s~l 229 (245)
..+.-++|.||||+|||++++.++..++ .+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3445588999999999999999999875 44666775554
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.41 E-value=0.00013 Score=60.66 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=30.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhc--c-------cceeeeechhH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANH--T-------TAAFIRVVGSE 228 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~--l-------~~~~~~v~~s~ 228 (245)
|+.++.-++|+||||+|||++++.+|.. + +...+.+++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4555566999999999999999999984 3 34566665443
No 128
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.41 E-value=0.00014 Score=60.20 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCcceeeecCCCCchHHHHHHHHhccc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
++.-+.|.||+|+|||++++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 344588999999999999999998763
No 129
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.39 E-value=8.6e-05 Score=63.36 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=28.6
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
+.-+.+.||||+|||++|+.||..++.+++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g 41 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence 345889999999999999999999998887653
No 130
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.37 E-value=9.2e-05 Score=63.01 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=30.5
Q ss_pred CcceeeecCCCCchHHHHHHHHhccccee--------eeechhHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAF--------IRVVGSEFV 230 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~--------~~v~~s~l~ 230 (245)
+.-|.+.||||+|||++|+.|+..++.++ +.++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34588999999999999999999998773 246666654
No 131
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.37 E-value=0.00011 Score=60.29 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=26.3
Q ss_pred cceeeecCCCCchHHHHHHHHhcc-cceeeeec
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVV 225 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l-~~~~~~v~ 225 (245)
.-+.+.||||+|||++++.++..+ +..++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347899999999999999999988 66665443
No 132
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.33 E-value=0.00013 Score=78.52 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=32.3
Q ss_pred CcHHHHhhhc---cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 180 THHELYKQIG---IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 180 ~~~~~~~~~g---~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-.+++...+| +.++++++||||||||||+||.++|.+.
T Consensus 1411 G~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1411 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456666666 8888999999999999999999998876
No 133
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.31 E-value=0.00014 Score=64.82 Aligned_cols=35 Identities=31% Similarity=0.557 Sum_probs=30.3
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeechh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS 227 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s 227 (245)
++-+++.||+|+|||+||..+|..++..++..|.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 45588999999999999999999999888877643
No 134
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.31 E-value=7.9e-05 Score=82.19 Aligned_cols=37 Identities=38% Similarity=0.695 Sum_probs=28.9
Q ss_pred CCCcceeeecCCCCchHHHH-HHHHhcccceeeeechh
Q 025979 191 DPPRGVLLYGPPGTGKTMLA-KAVANHTTAAFIRVVGS 227 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lA-kalA~~l~~~~~~v~~s 227 (245)
..++++||+||||||||++| ++++...+..++.+..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infs 1302 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS 1302 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECC
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEee
Confidence 45588999999999999999 55665557777777654
No 135
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.29 E-value=0.00013 Score=67.07 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=27.8
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
+.-|+|+||||+|||++|+.++..+++.++..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 445889999999999999999999987775543
No 136
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.27 E-value=0.0001 Score=60.64 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=24.3
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
|+.++.-++++||||+|||++++.+|..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45556668999999999999999999654
No 137
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.27 E-value=0.00016 Score=61.73 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=28.6
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
.-+.|.||+|+|||++++.||..+|..++ +...+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCcee
Confidence 34889999999999999999999987764 444444
No 138
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.23 E-value=0.00018 Score=60.48 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=28.9
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechhHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 230 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l~ 230 (245)
..+.|.||||+|||++++.+|..+|.+++ +..++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 34889999999999999999999997764 555554
No 139
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.21 E-value=0.00012 Score=80.80 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=33.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
...|+++.||||||||++++++|+.+|.+++++.+++
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e 680 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDD 680 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTS
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCC
Confidence 3467999999999999999999999999999998874
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.20 E-value=0.00015 Score=60.44 Aligned_cols=38 Identities=37% Similarity=0.410 Sum_probs=28.0
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
|+.++.-++++||||+|||++|..+|... +.+.+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 55566669999999999999998887643 445555543
No 141
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.18 E-value=0.00016 Score=60.40 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=21.5
Q ss_pred HhhhccCCCcc--eeeecCCCCchHHHHHHHHhcc
Q 025979 185 YKQIGIDPPRG--VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 185 ~~~~g~~~~~g--vLl~GPPGtGKT~lAkalA~~l 217 (245)
+..+.+..++| +.|.||+|+|||+|++.|+...
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34444444444 8899999999999999999865
No 142
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.18 E-value=0.00016 Score=60.36 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=22.7
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHH
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVA 214 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA 214 (245)
|+.++.-++|+||+|+|||+|++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45566669999999999999999998
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.16 E-value=0.00021 Score=58.90 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=26.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhccc-----ceeeeech
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVG 226 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~-----~~~~~v~~ 226 (245)
+.-+.+.||+|+|||+|++.|+..+. ..++.+++
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 34488999999999999999999875 45555544
No 144
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.16 E-value=0.00015 Score=65.65 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=29.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
+.+..-++++||||+|||+||..+|..+ +...+.++..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 4455559999999999999999999875 4455556654
No 145
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.15 E-value=0.00023 Score=59.55 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=26.7
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeec
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 225 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~ 225 (245)
+++++|.||||+|||++|..++...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999998875 555444
No 146
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.14 E-value=0.00035 Score=61.84 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=34.2
Q ss_pred CCcHHHHhhh--ccCCCcceeeecCCCCchHHHHHHHHhcc---------cceeeeechh
Q 025979 179 LTHHELYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVGS 227 (245)
Q Consensus 179 ~~~~~~~~~~--g~~~~~gvLl~GPPGtGKT~lAkalA~~l---------~~~~~~v~~s 227 (245)
...+.+..-+ |+.++.-++++||||+|||++|..+|..+ +...+.++..
T Consensus 91 TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 91 TGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 3344444444 46665669999999999999999998754 4455556544
No 147
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.13 E-value=0.00024 Score=67.24 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=34.4
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceee---eechhHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFI---RVVGSEFVQKYLGE 236 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~---~v~~s~l~~~~~Ge 236 (245)
.-|+|+|+||+|||++|+.||..+++.++ .++..++.....|.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~ 81 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQ 81 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccC
Confidence 44889999999999999999999966554 45777777766654
No 148
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.13 E-value=0.00016 Score=59.58 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=23.8
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
|+.+..-+.|+||||+|||+|++.++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4555556999999999999999999974
No 149
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.12 E-value=0.00021 Score=62.19 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=26.4
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechhHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 229 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~l 229 (245)
.-|.|.||||+|||++|+.++ .+|.+++ +..++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 348899999999999999999 5787764 44444
No 150
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.10 E-value=0.00034 Score=64.84 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+++.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999877
No 151
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.06 E-value=0.00038 Score=62.55 Aligned_cols=50 Identities=26% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCcHHHHhhh--ccCCCcceeeecCCCCchHHHHHHHHhcc---------cceeeeechhH
Q 025979 179 LTHHELYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVGSE 228 (245)
Q Consensus 179 ~~~~~~~~~~--g~~~~~gvLl~GPPGtGKT~lAkalA~~l---------~~~~~~v~~s~ 228 (245)
...+.+..-+ |+.+..-+.++||||+|||+|++.++... +...+.+++.+
T Consensus 115 TG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 115 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3344444443 44444459999999999999999999876 23446666543
No 152
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.03 E-value=0.00066 Score=60.70 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCCcHHHHhhh--ccCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 178 PLTHHELYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 178 ~~~~~~~~~~~--g~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
+...+.+..-+ |+.++.-++++||||+|||++|..+|..
T Consensus 105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34445555555 4555555899999999999999999875
No 153
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.01 E-value=0.00031 Score=63.22 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=28.2
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
|+.+..-++++||||+|||+||..+|..+ +.+.+.++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45555669999999999999999998654 344455543
No 154
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.99 E-value=0.00038 Score=58.16 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=16.2
Q ss_pred CCcceeeecCCCCchHHHHHHHH-hcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVA-NHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA-~~l 217 (245)
++.-+.|.||+|+|||++++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34448899999999999999999 654
No 155
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.00057 Score=61.73 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=29.7
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
|+.+.+-++++||||+|||++|..+|..+ +.+.+.++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45566669999999999999999998764 445666665
No 156
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.00038 Score=57.93 Aligned_cols=37 Identities=32% Similarity=0.338 Sum_probs=26.5
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeec
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVV 225 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~ 225 (245)
|+.++.-++++|+||+|||++|-.+|... +.+.+.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 45566669999999999999998776432 44444444
No 157
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.93 E-value=0.0005 Score=54.92 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||.|+|||+|.++++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344448899999999999999999876
No 158
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.90 E-value=0.00054 Score=66.33 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=31.6
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeechhHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEF 229 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l 229 (245)
.-|+|.|+||+|||++|++|+..+ |.+++.+++..+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 448899999999999999999999 899998886554
No 159
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.89 E-value=0.00091 Score=60.74 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=44.2
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 230 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~ 230 (245)
..+.|.....+.+.+.+.. + ......+|++|++|||||++|+++.... +.+|+.++++.+.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKK----------I-SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP 200 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHH----------H-TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred hhhhhccHHhhHHHHHHHH----------h-cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC
Confidence 3566666666666665543 1 1233458999999999999999998766 4789999987653
No 160
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.88 E-value=0.00043 Score=59.99 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=25.1
Q ss_pred hccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 188 IGIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 188 ~g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|+.++.-+++.||||+|||+|++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356666669999999999999999999765
No 161
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.87 E-value=0.00066 Score=55.64 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=24.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeee
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRV 224 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v 224 (245)
+.-+.+.||+|+|||++++.++..+ +.+++.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 3448899999999999999999875 4444444
No 162
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.87 E-value=0.00042 Score=58.59 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=22.5
Q ss_pred eeeecCCCCchHHHHHHHHhcccce
Q 025979 196 VLLYGPPGTGKTMLAKAVANHTTAA 220 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l~~~ 220 (245)
+.|.||+|+|||++++.|+..+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 7799999999999999999987654
No 163
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.87 E-value=0.00051 Score=56.49 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|+|||+|+++|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44448899999999999999999876
No 164
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.86 E-value=0.00039 Score=59.93 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=23.7
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
|+.+..-++++||||+|||+|++.+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555559999999999999999998643
No 165
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.86 E-value=0.0013 Score=63.56 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=21.2
Q ss_pred eeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
.|++||||||||++.-.+...+ +..++.++.+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 6899999999998655444333 4455555443
No 166
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.84 E-value=0.00035 Score=55.98 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=18.9
Q ss_pred CCcceeeecCCCCchHHHHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVA 214 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA 214 (245)
++.-++|+||+|+|||++++++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34448899999999999999643
No 167
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00064 Score=56.46 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=21.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+-+.|.||+|+|||+|+++|+...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 448899999999999999999765
No 168
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.81 E-value=0.00044 Score=58.89 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=28.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeee
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRV 224 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v 224 (245)
..+-|.||||+|||++|+.||..++.+++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4578899999999999999999999998876
No 169
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.81 E-value=0.00056 Score=62.00 Aligned_cols=38 Identities=32% Similarity=0.417 Sum_probs=28.6
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
|+.++.-++++||||+|||++|..+|..+ +.+.+.++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 45555669999999999999999988764 445555553
No 170
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.79 E-value=0.00088 Score=58.90 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.3
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
|+.+..-++++||||+|||++|..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555999999999999999998864
No 171
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.79 E-value=0.00066 Score=60.08 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=24.3
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.++..+.|+||+|+|||+|++.|++.+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 44455599999999999999999998763
No 172
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.76 E-value=0.00075 Score=58.18 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.+..-+++.||+|+|||++.++++..+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 33444489999999999999999998763
No 173
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0089 Score=54.82 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=30.4
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHH
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lA 210 (245)
...|+.|.+.+..-+.+.+.+. |+- ..+--.-...|+-||.+|+|||+..
T Consensus 109 ~F~FD~VF~~~~~Q~~Vf~~v~-~lv-----~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 109 EFKFDKIFDQQDTNVDVFKEVG-QLV-----QSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp EEEESEEECTTCCHHHHHHHHH-HHH-----HHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred EEEcCEEECCCCchHHHHHHHH-HHH-----HHHhCCcceEEEEECCCCCCCceEe
Confidence 3677777777766666655543 211 1111112234778999999999976
No 174
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.72 E-value=0.00052 Score=73.95 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=42.8
Q ss_pred cCCCcHHHHhhh---ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechhHHHH
Q 025979 177 LPLTHHELYKQI---GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 231 (245)
Q Consensus 177 ~~~~~~~~~~~~---g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s~l~~ 231 (245)
.|...+++..-+ |+.++..++++|+||+|||+||..+|..+ +.+++.+++.+...
T Consensus 713 i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ 773 (2050)
T 3cmu_A 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 773 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred eecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHH
Confidence 445567777777 47788889999999999999999999876 44688887765433
No 175
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=96.71 E-value=0.01 Score=54.55 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=30.9
Q ss_pred CceeccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHH
Q 025979 155 DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLA 210 (245)
Q Consensus 155 ~~~~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lA 210 (245)
..+|+.|.+.+..-+.+.+.+. |+- ..+--.-...|+-||.+|+|||+..
T Consensus 107 ~F~FD~VF~~~~~Q~~Vf~~v~-plv-----~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 107 IFSFDQVFHPLSSQSDIFEMVS-PLI-----QSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp EEECSEEECTTCCHHHHHTTTH-HHH-----HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred EEeeCeEcCCCCCHHHHHHHHH-HHH-----HHHHCCCceEEEEecCCCCCCeeEe
Confidence 4677888877766666665432 221 1111112234788999999999975
No 176
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.71 E-value=0.001 Score=63.72 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=32.0
Q ss_pred cceeeecCCCCchHHHHHHHHhccc----ceeeeechhHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT----AAFIRVVGSEFVQ 231 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~----~~~~~v~~s~l~~ 231 (245)
.-|+|.|+||+|||++|++|+..++ .+++.+++..+..
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 3488999999999999999999986 6788888776544
No 177
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.70 E-value=0.00077 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.1
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
+.-+.|.||||+|||++|+.||..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 345889999999999999999964
No 178
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.64 E-value=0.0023 Score=53.95 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=33.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechh-HHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS-EFVQKYLG 235 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s-~l~~~~~G 235 (245)
+.++++||+|+|||.+|.+++..++.+.+.+... +++..|..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~ 151 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKE 151 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHH
Confidence 3489999999999999999998887666666655 77666543
No 179
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.63 E-value=0.00093 Score=56.38 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=26.5
Q ss_pred ceeeecCCCCchHHHHHHHHhcccceeee
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAAFIR 223 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~~~~ 223 (245)
-|.+.|++|||||++|+.||..+|.+|+-
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47899999999999999999999999854
No 180
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.63 E-value=0.0013 Score=57.96 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=27.9
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeec
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVV 225 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~ 225 (245)
|+.++.-+++.|+||+|||++|..+|... +.+.+.++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56666669999999999999999988654 34444444
No 181
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.63 E-value=0.0019 Score=61.80 Aligned_cols=34 Identities=38% Similarity=0.420 Sum_probs=26.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
+.+++.||||||||+++.+++..+ +.+++.+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 458899999999999999998765 4555555433
No 182
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.62 E-value=0.00084 Score=59.98 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=27.0
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc-----cceeeeechh
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGS 227 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s 227 (245)
+.+. -++++||||+|||+||-.++..+ +...+.++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 4443 47899999999999988776544 4566777754
No 183
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.61 E-value=0.00088 Score=59.04 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-++|.||+|+|||++++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344558899999999999999999876
No 184
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.59 E-value=0.001 Score=56.01 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=24.6
Q ss_pred cceeeecCCCCchHHHHHHHHhccc--ceeee
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT--AAFIR 223 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~ 223 (245)
.-+.|.||||+|||++++.|+..++ ..++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3488999999999999999999886 34443
No 185
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.59 E-value=0.00089 Score=58.67 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=23.1
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+.-+.+.||+|+|||++|+.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 344789999999999999999998853
No 186
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.58 E-value=0.0011 Score=55.57 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.++.-+.|.||+|+|||+|.++|+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3444588999999999999999998764
No 187
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.55 E-value=0.00077 Score=62.69 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=31.4
Q ss_pred CcceeeecCCCCchHHHHHHHHhccccee---eeechhHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAF---IRVVGSEFVQKYLG 235 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~---~~v~~s~l~~~~~G 235 (245)
+.-|+|+|+||+|||++++.+|..+++.+ ..++..++..+..|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g 84 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVK 84 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhcc
Confidence 34589999999999999999999886544 33444555554444
No 188
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.52 E-value=0.0017 Score=59.55 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=25.1
Q ss_pred cHHHHhhh--ccCCCcceeeecCCCCchHHHHHHHH
Q 025979 181 HHELYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVA 214 (245)
Q Consensus 181 ~~~~~~~~--g~~~~~gvLl~GPPGtGKT~lAkalA 214 (245)
.+.+..-+ |+.+..-++|+||||||||+|++.+|
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 34444444 45555559999999999999999765
No 189
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.51 E-value=0.00095 Score=56.92 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=25.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc-cceee
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT-TAAFI 222 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l-~~~~~ 222 (245)
.+.-|.|.|++|+|||++++.|+..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34458899999999999999999998 55555
No 190
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.50 E-value=0.001 Score=60.31 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=25.7
Q ss_pred hhhccCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 186 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 186 ~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
..+.+.++..+++.||+|+|||++.++++..+.
T Consensus 129 ~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 129 LELCHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp HHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344344445589999999999999999998763
No 191
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.49 E-value=0.0012 Score=62.88 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=31.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhccc----ceeeeechhHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTT----AAFIRVVGSEFVQ 231 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~----~~~~~v~~s~l~~ 231 (245)
.+..+.|.||+|+|||+++++||..++ ..+..+++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 344588999999999999999999885 3455577776654
No 192
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.45 E-value=0.0016 Score=57.11 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=22.0
Q ss_pred cceeeecCCCCchHHHHHHHHhccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.-+.|.||+|+|||++++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3378999999999999999999765
No 193
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.43 E-value=0.00086 Score=53.55 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.9
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
-.+|+||+|+|||++.+||+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 367999999999999999987653
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.43 E-value=0.0053 Score=55.01 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCcHHHHhhh-ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeee
Q 025979 179 LTHHELYKQI-GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRV 224 (245)
Q Consensus 179 ~~~~~~~~~~-g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v 224 (245)
...+++..-+ |+.+..-+++.|+||+|||++|..+|..+ +.++..+
T Consensus 31 TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp CSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3344444443 46665559999999999999999998764 4454444
No 195
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.42 E-value=0.0014 Score=59.18 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.5
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
-+++.||+|+|||++.+++++.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 488999999999999999998763
No 196
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.41 E-value=0.002 Score=59.64 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=28.1
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeec
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVV 225 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~ 225 (245)
|+.++.-+++.||||+|||++|..+|..+ |.+++.++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56666669999999999999999988754 43555544
No 197
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.40 E-value=0.0013 Score=58.09 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+++-+++.||+|+|||+++..+|..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 345558999999999999999999876
No 198
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.38 E-value=0.0012 Score=59.60 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-++|.||+|+|||++++.||..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 344558999999999999999999876
No 199
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.38 E-value=0.0018 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..+|+||.||+|+|||++|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3578999999999999999999874
No 200
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.36 E-value=0.0015 Score=55.34 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444458899999999999999999876
No 201
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.34 E-value=0.0022 Score=59.16 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.7
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeec
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVV 225 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~ 225 (245)
|+.++.-+++.||||+|||++|..+|... +.+++.++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46665569999999999999999888654 44555554
No 202
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.34 E-value=0.0016 Score=55.16 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344448899999999999999999876
No 203
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.30 E-value=0.0014 Score=55.03 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344448899999999999999999876
No 204
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.30 E-value=0.0024 Score=56.84 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.5
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
-+.+.||+|||||++++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 377999999999999999998764
No 205
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.28 E-value=0.0019 Score=56.95 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.-+.|.||+|||||++++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3448899999999999999999765
No 206
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.28 E-value=0.0037 Score=59.05 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=36.8
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..++|-+...+.|.+.+... -...+-++++||+|+|||+||+.+++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 46889999999998887541 012345899999999999999999764
No 207
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.28 E-value=0.0018 Score=55.74 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.++|+..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334448899999999999999999876
No 208
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.26 E-value=0.0014 Score=61.66 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.-++|.||+|+|||++++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3448899999999999999999876
No 209
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.25 E-value=0.002 Score=56.93 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=21.7
Q ss_pred cceeeecCCCCchHHHHHHHHhccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.-+.+.||+|+|||+|++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3378999999999999999998763
No 210
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.25 E-value=0.0029 Score=67.36 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=35.8
Q ss_pred cHHHHhhh---ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 181 HHELYKQI---GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 181 ~~~~~~~~---g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
.+++..-+ |+.++..++++||||+|||+||..+|..+ +.+++.++..
T Consensus 717 ~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred cHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 35555555 47788889999999999999999998876 3356666654
No 211
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.23 E-value=0.0034 Score=56.60 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=42.7
Q ss_pred ccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhcccce--eeeechhHH
Q 025979 159 NDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--FIRVVGSEF 229 (245)
Q Consensus 159 ~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~l~~~--~~~v~~s~l 229 (245)
.++.|......++.+.+... . .....+|++|++||||+++|+++....+.. |+.++++.+
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-------a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~ 190 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-------A----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASI 190 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-------H----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSS
T ss_pred ccccccchHHHHHHhhhhhh-------h----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccC
Confidence 35677777666666655431 1 123449999999999999999998776433 999988753
No 212
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.19 E-value=0.0017 Score=55.61 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.+.||+|+|||+|.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34448899999999999999999876
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.19 E-value=0.0024 Score=59.12 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.++|+||||+|||+++..+|..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999876
No 214
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.18 E-value=0.0023 Score=54.46 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=23.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+ .-+.+.||+|+|||+|.+.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 445 568899999999999999999876
No 215
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.17 E-value=0.0043 Score=57.12 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.7
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
+++.||+|+|||++.++++..+
T Consensus 170 i~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999876
No 216
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.17 E-value=0.0022 Score=55.32 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344448899999999999999999876
No 217
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.16 E-value=0.0021 Score=54.58 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344448899999999999999999876
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.16 E-value=0.0023 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++-++|.||+|+|||+++..+|..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34558899999999999999999765
No 219
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.14 E-value=0.002 Score=72.09 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=32.6
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccceeeeechhH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 228 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s~ 228 (245)
..|..+.||+|||||.+++.+|+.+|.+++.+++++
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~ 639 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDE 639 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSS
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCC
Confidence 456789999999999999999999999999998764
No 220
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.13 E-value=0.0023 Score=55.36 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344448899999999999999999876
No 221
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.13 E-value=0.0021 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344458899999999999999999876
No 222
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.13 E-value=0.0028 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
...-+.|.||+|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34558899999999999999998765
No 223
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.13 E-value=0.0024 Score=54.96 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344458999999999999999999876
No 224
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.12 E-value=0.0036 Score=60.28 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=22.5
Q ss_pred ceeeecCCCCchHHHHHHHHhcc----cceeeeech
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVG 226 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~ 226 (245)
-++++||||||||+++..++..+ +..++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47899999999999877666543 344444443
No 225
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.11 E-value=0.0024 Score=53.40 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.++..+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344448899999999999999999876
No 226
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.09 E-value=0.0022 Score=58.06 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..-+.|.||+|||||+|.+.||...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3338899999999999999999876
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.09 E-value=0.0025 Score=56.80 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|+|||++++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34458899999999999999999866
No 228
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.09 E-value=0.003 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=22.4
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.++.-+.|.||+|+|||+|.+.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444889999999999999999996
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.09 E-value=0.0029 Score=58.63 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
|+-++|.||||+|||+++..+|..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4558899999999999999999766
No 230
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.09 E-value=0.0022 Score=54.35 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.+.||+|+|||+|.+.|+..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33448899999999999999999876
No 231
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.07 E-value=0.0023 Score=55.63 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|+|||+|.++|+..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33448899999999999999999876
No 232
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.07 E-value=0.0024 Score=53.10 Aligned_cols=24 Identities=46% Similarity=0.517 Sum_probs=21.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
+.-+.+.||+|+|||+|.++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 344889999999999999999975
No 233
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.06 E-value=0.0036 Score=57.96 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=31.0
Q ss_pred HHHHhhh-ccCCCcceeeecCCCCchHHHHHHHHhcc---cceeeeec
Q 025979 182 HELYKQI-GIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVV 225 (245)
Q Consensus 182 ~~~~~~~-g~~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~ 225 (245)
+++..-+ |+.++.-+++.|+||+|||++|-.+|... |.+++.++
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 4443333 46555559999999999999999888655 45555554
No 234
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.06 E-value=0.0023 Score=54.55 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344448899999999999999999976
No 235
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.06 E-value=0.0024 Score=54.66 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=26.5
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcccc-eeeeech
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTTA-AFIRVVG 226 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~~-~~~~v~~ 226 (245)
.++.-+.+.||+|+|||+|.+.++..+.. --+.+++
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g 60 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAG 60 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECC
Confidence 34444889999999999999999987632 3344444
No 236
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.05 E-value=0.0038 Score=59.40 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.6
Q ss_pred cceeeecCCCCchHHHHHHHHhccc---ceeeeechhHHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEFVQK 232 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~---~~~~~v~~s~l~~~ 232 (245)
.-++|.|+||+|||++|+.|+..++ .++..+++..+...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~ 414 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTH 414 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhh
Confidence 4488999999999999999999875 45666776665443
No 237
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.04 E-value=0.0028 Score=59.87 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=23.5
Q ss_pred cceeeecCCCCchHHHHHHHHhcccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
..+.|.|++|||||++|++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34889999999999999999999975
No 238
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.04 E-value=0.0028 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344448899999999999999999876
No 239
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.04 E-value=0.0026 Score=54.30 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.3
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.++.-+.+.||+|+|||+|.+.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444889999999999999999996
No 240
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.02 E-value=0.0026 Score=57.46 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|||||+|.+.||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 33448899999999999999999876
No 241
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.02 E-value=0.0027 Score=54.85 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.++|+..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344448899999999999999999876
No 242
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.006 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=21.5
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
...++++|++|+|||+|..++....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999998653
No 243
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.02 E-value=0.0028 Score=54.58 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344448899999999999999999876
No 244
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0027 Score=57.46 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|||||+|.+.||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33448899999999999999999876
No 245
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.01 E-value=0.0026 Score=55.41 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344448899999999999999999876
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.00 E-value=0.0039 Score=55.31 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=26.6
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc---cceeeeec
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVV 225 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~ 225 (245)
.+++-+++.||+|+|||+++..+|..+ +..++.++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345568999999999999999999876 44444443
No 247
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.00 E-value=0.0037 Score=58.08 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+|.-+++.||||+|||+++..+|..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35669999999999999999998765
No 248
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.00 E-value=0.0028 Score=57.79 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|||||+|.+.||...
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 33348899999999999999999876
No 249
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.98 E-value=0.0027 Score=59.94 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+.++++.||+|+|||++.++++..+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345669999999999999999999877
No 250
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.97 E-value=0.0031 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++|.||+|+|||+|.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 251
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.96 E-value=0.0026 Score=57.47 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+..-+.|.||+|||||+|.+.||...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34448899999999999999999876
No 252
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.96 E-value=0.0024 Score=57.52 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|||||+|.+.||...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33448899999999999999999876
No 253
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.96 E-value=0.0033 Score=57.11 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+.-+.|.||+|||||+|.+.||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33448899999999999999999876
No 254
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.95 E-value=0.0026 Score=57.29 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=24.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.+...+++.||+|+|||+++++++....
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44556699999999999999999998763
No 255
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.95 E-value=0.0028 Score=54.27 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.++..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344448899999999999999999875
No 256
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.93 E-value=0.0033 Score=56.33 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=24.7
Q ss_pred CcceeeecCCCCchHHHHHHHHhccccee
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTAAF 221 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~~~ 221 (245)
...+.+.||+|+|||+|++.|+..+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 34589999999999999999999876543
No 257
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.89 E-value=0.005 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-+.|.||||+|||+|.++++..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 38899999999999999998654
No 258
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.88 E-value=0.0062 Score=56.37 Aligned_cols=38 Identities=29% Similarity=0.503 Sum_probs=27.8
Q ss_pred cCCCcc--eeeecCCCCchHHHHHHHHhcccce--eeeechh
Q 025979 190 IDPPRG--VLLYGPPGTGKTMLAKAVANHTTAA--FIRVVGS 227 (245)
Q Consensus 190 ~~~~~g--vLl~GPPGtGKT~lAkalA~~l~~~--~~~v~~s 227 (245)
+..++| +.|.||+|||||+|.+.||+..... .+.+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 344444 8899999999999999999987432 3444443
No 259
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.86 E-value=0.0033 Score=57.05 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|||||+|.+.||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 33448899999999999999999876
No 260
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.85 E-value=0.0049 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..++|+|+||+|||+|..++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999998754
No 261
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.83 E-value=0.0041 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.+++.|+||+|||+|..++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999873
No 262
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.82 E-value=0.0025 Score=56.75 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=27.2
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccc--ceeeeech
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVG 226 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~ 226 (245)
.+...+++.||+|+|||++.++++.... ...+.+.+
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 3445699999999999999999999873 23444443
No 263
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.80 E-value=0.0038 Score=58.33 Aligned_cols=38 Identities=8% Similarity=-0.036 Sum_probs=28.1
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc----cceeeeech
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVG 226 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~ 226 (245)
|+.+..-+++.||||+|||++|..+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45555559999999999999999888654 445555543
No 264
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.75 E-value=0.0027 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|||||+|.+.||...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33448899999999999999999876
No 265
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.74 E-value=0.006 Score=60.63 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=18.5
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999877666543
No 266
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.73 E-value=0.0043 Score=56.68 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+..-+.|.||+|||||+|.+.||...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344448999999999999999999865
No 267
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.73 E-value=0.004 Score=69.69 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=27.0
Q ss_pred CCCcceeeecCCCCchHHHHHH-HHhcccceeeeechh
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKA-VANHTTAAFIRVVGS 227 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAka-lA~~l~~~~~~v~~s 227 (245)
...+.+||+||||||||.++.. +++..+.+++.++.|
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS 1339 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFS 1339 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCC
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEee
Confidence 3457799999999999977654 555556677777644
No 268
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.73 E-value=0.0069 Score=57.22 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=34.0
Q ss_pred CcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHh
Q 025979 162 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 162 ~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
.|-+..+++|.+.+... +-...+-+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 48999899988887431 111235588999999999999999996
No 269
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.72 E-value=0.0069 Score=58.21 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=19.5
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+-+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 458999999999999888776544
No 270
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.72 E-value=0.0054 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.3
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.+++.|+||+|||+|..++..
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999975
No 271
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.72 E-value=0.0051 Score=47.32 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.+++.|++|+|||+|..++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 272
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.71 E-value=0.0042 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.+.|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 333448899999999999999999876
No 273
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.69 E-value=0.0027 Score=51.35 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.....++|.||||+|||+|.++++...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344449999999999999999988644
No 274
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.69 E-value=0.0066 Score=54.45 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.4
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+..+.|.||+|+|||+|.+.|++....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 344899999999999999999998753
No 275
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0056 Score=57.06 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+++.||+|+|||+|+|.|++..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4455559999999999999999999876
No 276
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.63 E-value=0.0047 Score=58.17 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=27.3
Q ss_pred cCCCcceeeecCCCCchHHHHHH--HHhcc--cceeeeechhH
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKA--VANHT--TAAFIRVVGSE 228 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAka--lA~~l--~~~~~~v~~s~ 228 (245)
+.++.-+++.||||+|||+|++. ++... +..-+.+++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 44556699999999999999999 44443 33445555543
No 277
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.62 E-value=0.0041 Score=54.97 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|++.|+..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3444559999999999999999999876
No 278
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.61 E-value=0.0051 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=22.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.-+.+.||+|+|||+|.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3448899999999999999999876
No 279
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.57 E-value=0.0062 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.3
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..+++.|++|+|||+|..++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 280
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.57 E-value=0.0054 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.6
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
-|.|.||+|+|||++++.|+..+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378899999999999999999884
No 281
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.56 E-value=0.0065 Score=46.80 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.7
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-.+++.|++|+|||+|..++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 282
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.53 E-value=0.0053 Score=57.81 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=24.3
Q ss_pred ccCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 189 GIDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 189 g~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
|+.+..-+++.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45555669999999999999999999754
No 283
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.53 E-value=0.0082 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.8
Q ss_pred CCcceeeecCCCCchHHHHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
....|++.|++|+|||+|..++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345599999999999999999975
No 284
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.52 E-value=0.006 Score=48.93 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.7
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.+++.|+||+|||+|..++..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999986
No 285
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.51 E-value=0.0068 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.2
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.+++.|+||+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999753
No 286
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.50 E-value=0.027 Score=45.30 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.5
Q ss_pred CcceeeecCCCCchHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLA 210 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lA 210 (245)
.+.+++.+|+|+|||..+
T Consensus 38 ~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 366999999999999864
No 287
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.48 E-value=0.0072 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.3
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.+++.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999854
No 288
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.47 E-value=0.0082 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.3
Q ss_pred CcceeeecCCCCchHHHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
...+++.|++|+|||+|..++..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34599999999999999999975
No 289
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.46 E-value=0.0072 Score=47.08 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.8
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.-.|++.|++|+|||+|...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999988754
No 290
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.44 E-value=0.0073 Score=48.57 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=20.6
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.-.|++.|++|+|||+|..++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 345999999999999999998753
No 291
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.42 E-value=0.0075 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.4
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.+++.|++|+|||+|..++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999985
No 292
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.40 E-value=0.0084 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.159 Sum_probs=19.3
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
++++||||+|||+++..++..+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7788999999999998888765
No 293
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.40 E-value=0.0078 Score=55.21 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+..++++||||||||+|++.||+..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34449999999999999999998864
No 294
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.40 E-value=0.0065 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|++.|+||+|||+|..++...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999754
No 295
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.0089 Score=59.39 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=17.5
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-+++.||||||||+++..++..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999977666543
No 296
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.36 E-value=0.0079 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.9
Q ss_pred cceeeecCCCCchHHHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~ 215 (245)
-.|++.|++|+|||+|..++..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999985
No 297
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.36 E-value=0.0093 Score=49.90 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=28.7
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeech
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 226 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~ 226 (245)
-.|-|.|..|||||++++.++. +|++++..|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 4588999999999999999998 9999988774
No 298
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.30 E-value=0.009 Score=56.34 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=25.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
.++.|+|+|+||+|||+++..||..+ |.....+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35569999999999999999999665 444444443
No 299
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.28 E-value=0.011 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+++.+++.||+|+|||+++..+|..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45558899999999999999999776
No 300
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.27 E-value=0.0081 Score=46.64 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.3
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.+++.|++|+|||+|..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 499999999999999999974
No 301
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.25 E-value=0.0089 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.9
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999854
No 302
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.25 E-value=0.0086 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.+.||+|+|||+|.++|+...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33348899999999999999999876
No 303
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.25 E-value=0.0093 Score=47.10 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|++.|+||+|||+|.+.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 39999999999999999887644
No 304
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.23 E-value=0.0087 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.9
Q ss_pred cceeeecCCCCchHHHHHHHHhccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.-|.|.||+|+|||++++.++..++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3378899999999999999998873
No 305
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.23 E-value=0.0099 Score=47.14 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.5
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..+++.|+||+|||+|...+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34999999999999999999864
No 306
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.22 E-value=0.0093 Score=47.42 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.8
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999998863
No 307
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.20 E-value=0.01 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.6
Q ss_pred CCcceeeecCCCCchHHHHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
....+++.|+||+|||+|..++..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344599999999999999999874
No 308
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.19 E-value=0.0098 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.+++.|++|+|||+|..++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34999999999999999999854
No 309
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.17 E-value=0.0093 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.5
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..+++.|++|+|||+|..++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999864
No 310
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.17 E-value=0.01 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.7
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.+++.|++|+|||+|..++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999998754
No 311
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.17 E-value=0.0099 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.2
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..|++.|++|+|||+|..++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 34999999999999999999853
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.16 E-value=0.01 Score=47.04 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..+++.|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999764
No 313
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.15 E-value=0.0092 Score=46.90 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.1
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.+++.|++|+|||+|..++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998753
No 314
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.14 E-value=0.013 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.4
Q ss_pred ceeeecCCCCchHHHHHHH-Hhcccce
Q 025979 195 GVLLYGPPGTGKTMLAKAV-ANHTTAA 220 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkal-A~~l~~~ 220 (245)
.+||.|+||| ||++|+++ ++.+...
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~ 266 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRG 266 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSE
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCe
Confidence 5999999999 99999999 7766443
No 315
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.14 E-value=0.01 Score=46.44 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
.+++||.|+|||++..||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999997654
No 316
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.13 E-value=0.0096 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.2
Q ss_pred ceeeecCCCCchHHHHHHHHhcccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
-|.|.|++|+|||++++.++..++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3778899999999999999998755
No 317
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.13 E-value=0.012 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+++-+.+.||+|+|||+++..+|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457888999999999999999866
No 318
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.13 E-value=0.012 Score=54.46 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=26.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc----cceeeeech
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVG 226 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~ 226 (245)
+++.++++|++|+|||+++-.||..+ |..+..+++
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45678999999999999999888665 444444443
No 319
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.12 E-value=0.0088 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
...+++.|+||+|||+++..++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999998774
No 320
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.011 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|++.|++|+|||+|...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999764
No 321
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.10 E-value=0.012 Score=52.49 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..|.|.|+||+|||+++..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 348899999999999999998765
No 322
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.08 E-value=0.01 Score=52.00 Aligned_cols=25 Identities=40% Similarity=0.495 Sum_probs=21.6
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++-+++.||+|+|||+++..+|..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458889999999999999999766
No 323
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.08 E-value=0.0039 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++||+|+|||+|.++|+..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5688999999999999999876
No 324
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.08 E-value=0.025 Score=51.80 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=35.6
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechh-HHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS-EFVQKYLGE 236 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s-~l~~~~~Ge 236 (245)
+.+++++|+|+|||.++-.++..++.+.+.+.+. ++...|..+
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~ 152 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKER 152 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHH
Confidence 3589999999999999988888888777777777 888777554
No 325
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.07 E-value=0.02 Score=57.96 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=37.6
Q ss_pred eccCCcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 158 YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 158 ~~dv~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
...++|-+...++|.+.+...- ...+-+.++|++|+|||+||+.+++.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3468999999999988875310 12345889999999999999999876
No 326
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.06 E-value=0.0098 Score=49.58 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=20.0
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
+.|.||.|+|||++++.|+..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999987
No 327
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.06 E-value=0.012 Score=54.46 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.7
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
+.|.||+|+|||+|.++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 779999999999999999876
No 328
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.04 E-value=0.011 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.7
Q ss_pred cceeeecCCCCchHHHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~ 215 (245)
-.|++.|+||+|||+|...+..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4499999999999999999864
No 329
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.04 E-value=0.011 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998854
No 330
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.012 Score=45.98 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.+++.|++|+|||+|..++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45999999999999999998753
No 331
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.01 E-value=0.012 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.8
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999998754
No 332
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.99 E-value=0.064 Score=43.70 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=17.4
Q ss_pred CcceeeecCCCCchHHH-HHHHHh
Q 025979 193 PRGVLLYGPPGTGKTML-AKAVAN 215 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~l-AkalA~ 215 (245)
.+.+++.+|+|+|||.. +-++..
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHH
Confidence 36699999999999987 333333
No 333
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.98 E-value=0.016 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+++++|+|+|||+++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 569999999999999988777643
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.98 E-value=0.01 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.+++.|++|+|||+|..++...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999998765
No 335
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.97 E-value=0.012 Score=46.61 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.9
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999863
No 336
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.97 E-value=0.012 Score=46.84 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.1
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
|++.|++|+|||+|...+...
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 999999999999999988753
No 337
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.97 E-value=0.012 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|++.|+||+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999764
No 338
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.97 E-value=0.012 Score=46.38 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
....+++.|+||+|||+|..++...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3445999999999999999999853
No 339
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.95 E-value=0.012 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.-.+++.|++|+|||+|..++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998754
No 340
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.95 E-value=0.013 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.8
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
|+|.|++|+|||+|...+...
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999877653
No 341
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.93 E-value=0.013 Score=51.87 Aligned_cols=24 Identities=42% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
..+|+||.||+|+|||++|-++..
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999998875
No 342
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.92 E-value=0.014 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.8
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.+|++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 578999999999999999999874
No 343
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.91 E-value=0.013 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.9
Q ss_pred cceeeecCCCCchHHHHHHHHhccc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
.-+.|.||||+|||+|.++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3488999999999999999998654
No 344
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.013 Score=46.31 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.9
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|+||+|||+|..++...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999754
No 345
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.88 E-value=0.014 Score=55.22 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.++.-+.|.||+|+|||+|.++|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558999999999999999999876
No 346
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.88 E-value=0.013 Score=46.86 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
...|++.|++|+|||+|..++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999999998764
No 347
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.87 E-value=0.013 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.6
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999998753
No 348
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.012 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|...+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4999999999999999998864
No 349
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.81 E-value=0.026 Score=46.92 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcccc-eeeeechhHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHTTA-AFIRVVGSEFVQ 231 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l~~-~~~~v~~s~l~~ 231 (245)
|..-+++.|.||+||+++|+.+.+.++. .+..+++++.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 5555889999999999999999887753 244567777665
No 350
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.013 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.7
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999753
No 351
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.81 E-value=0.014 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|+||+|||+|..++...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 352
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.79 E-value=0.014 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.7
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3999999999999999999853
No 353
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.78 E-value=0.017 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.2
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..-+.+.||||+|||+++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3448899999999999999998654
No 354
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.77 E-value=0.015 Score=46.10 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.2
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.|++.|++|+|||+|..++..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 499999999999999999874
No 355
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.76 E-value=0.015 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..|+|.|+||+|||+|..++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 34999999999999999999864
No 356
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.75 E-value=0.015 Score=46.28 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.2
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
+++.|++|+|||+|...+...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999998753
No 357
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.75 E-value=0.016 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.5
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
...+++.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998764
No 358
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.74 E-value=0.015 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.1
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|++.|+||+|||+|..++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999998743
No 359
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.74 E-value=0.022 Score=51.30 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.5
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
...+++.||+|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3458999999999999999988754 555665653
No 360
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.73 E-value=0.014 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|++.|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999753
No 361
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.71 E-value=0.054 Score=46.91 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=25.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc-----cceeeeechh-HHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGS-EFVQKY 233 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l-----~~~~~~v~~s-~l~~~~ 233 (245)
.+.+++.+|+|+|||+.+-..+-.. +...+.+.+. ++...+
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 90 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV 90 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHH
Confidence 3679999999999999765444332 4444445443 554443
No 362
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.70 E-value=0.014 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|...+...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 363
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.69 E-value=0.01 Score=56.37 Aligned_cols=33 Identities=30% Similarity=0.554 Sum_probs=25.5
Q ss_pred HhhhccCCC-cc--eeeecCCCCchHHHHHHHHhcc
Q 025979 185 YKQIGIDPP-RG--VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 185 ~~~~g~~~~-~g--vLl~GPPGtGKT~lAkalA~~l 217 (245)
|+-+++..+ +| +.|.||+|+|||+|.+.|+..+
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 333455543 44 7899999999999999999876
No 364
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.68 E-value=0.011 Score=47.57 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.9
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.|++.|+||+|||+|...+.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 399999999999999999863
No 365
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.68 E-value=0.013 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.-+.|.||+|+|||+|.++|+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 347899999999999999999865
No 366
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.67 E-value=0.015 Score=46.80 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..|++.|++|+|||+|..++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 34999999999999999999864
No 367
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.015 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.0
Q ss_pred CCcceeeecCCCCchHHHHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
..-.|++.|+||+|||+|..++..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 345699999999999999999975
No 368
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.66 E-value=0.056 Score=43.99 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=26.0
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc------cceeeeech-hHHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVG-SEFVQKY 233 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l------~~~~~~v~~-s~l~~~~ 233 (245)
.+.+++.+|+|+|||..+-..+-.. +...+.+.+ .++...+
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 98 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 98 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHH
Confidence 3569999999999998766544332 224444444 3555443
No 369
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.62 E-value=0.0099 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=10.3
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.-.|++.|+||+|||+|..++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999988643
No 370
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.016 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred CcceeeecCCCCchHHHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
.-.|++.|++|+|||+|..++..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34599999999999999999984
No 371
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.58 E-value=0.062 Score=44.29 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.9
Q ss_pred CcceeeecCCCCchHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAK 211 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAk 211 (245)
.+.+++.+|+|+|||+.+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 4679999999999998643
No 372
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.57 E-value=0.016 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.6
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|...+...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4999999999999999998753
No 373
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.57 E-value=0.013 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.0
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..|++.|++|+|||+|...+...
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 34999999999999999998753
No 374
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.56 E-value=0.011 Score=53.30 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=20.4
Q ss_pred CCcc-eeeecCCCCchHHHHHHHHhc
Q 025979 192 PPRG-VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 192 ~~~g-vLl~GPPGtGKT~lAkalA~~ 216 (245)
.+.| ++++||+|+|||+|..||+-.
T Consensus 21 ~~~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 21 FQSGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344 779999999999999998743
No 375
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.56 E-value=0.017 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.6
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|++.|++|+|||+|...+...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34999999999999999998753
No 376
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.51 E-value=0.021 Score=47.87 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-+++.|.+|+|||+++..+|..+
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 37889999999999999998654
No 377
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.49 E-value=0.016 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.5
Q ss_pred cceeeecCCCCchHHHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~ 215 (245)
-.|++.|++|+|||+|..++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3499999999999999999874
No 378
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.48 E-value=0.0077 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.1
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
.+|+||+|+|||++..||.-.+
T Consensus 26 ~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999986543
No 379
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.018 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.+++.|++|+|||+|...+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 380
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.46 E-value=0.014 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|++.|++|+|||+|..++....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999987643
No 381
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.44 E-value=0.016 Score=55.21 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=27.8
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccc--ceeeeechhH
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSE 228 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~s~ 228 (245)
.++.-+.+.||+|+|||++++.+++... .--+.+++.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 3444489999999999999999998763 2244555543
No 382
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.44 E-value=0.019 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.7
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|+|.|++|+|||+|..++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999853
No 383
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.43 E-value=0.016 Score=46.27 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.8
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
|++.|++|+|||+|..++...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998753
No 384
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.39 E-value=0.026 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
...+++||||||||.|+..||+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHH
Confidence 349999999999999999998864
No 385
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.38 E-value=0.018 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.2
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..|++.|++|+|||+|..++...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999999764
No 386
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.38 E-value=0.019 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.4
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.-+.|.||+|+|||+|.++|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 447899999999999999999 55
No 387
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.38 E-value=0.016 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999999853
No 388
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.36 E-value=0.02 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.6
Q ss_pred ceeeecCCCCchHHHHHHHHhcccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
-.+++||.|+|||++..||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3789999999999999999876654
No 389
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.32 E-value=0.019 Score=46.84 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=19.3
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.|++.|++|+|||+|..++..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 499999999999999999975
No 390
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.02 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.9
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999863
No 391
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.32 E-value=0.019 Score=54.73 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=27.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc--ceeeeechh
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGS 227 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~s 227 (245)
+.++.-+.+.||+|+|||+|.+.+++... .--+.+++.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH 405 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE
Confidence 34444599999999999999999998763 224445543
No 392
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.29 E-value=0.02 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.6
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|...+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4999999999999999998753
No 393
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.26 E-value=0.02 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|.+.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3999999999999999988764
No 394
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.23 E-value=0.022 Score=53.38 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.9
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.+ .-+.|.||+|+|||+|.++|+..+
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 344 558899999999999999999865
No 395
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.22 E-value=0.021 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999863
No 396
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.20 E-value=0.021 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.2
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|++.|+||+|||+|...+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998853
No 397
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.20 E-value=0.011 Score=53.22 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=22.2
Q ss_pred cCCCcc-eeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRG-VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~g-vLl~GPPGtGKT~lAkalA~~l 217 (245)
+..+.| .+|+||+|+|||++..+|+..+
T Consensus 22 ~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 22 LNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 333444 7799999999999999998644
No 398
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.20 E-value=0.022 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-+.|.||||+|||+|..+++..+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999753
No 399
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.19 E-value=0.017 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=21.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhccc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+..++|+||||||||+|+..++....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhh
Confidence 34599999999999999998887653
No 400
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.18 E-value=0.02 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCcceeeecCCCCchHHHHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
..-.+++.|+||+|||+|..++..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344599999999999999999854
No 401
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.18 E-value=0.017 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.7
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
|++.||+|+|||+|.+.|+..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999998764
No 402
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.024 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999854
No 403
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.15 E-value=0.019 Score=54.80 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=27.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc--ceeeeechh
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGS 227 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~--~~~~~v~~s 227 (245)
+.++.-+.+.||+|+|||+|.+.+++... .--+.+++.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 406 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGH 406 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCE
Confidence 34444599999999999999999998763 224445543
No 404
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.14 E-value=0.038 Score=56.70 Aligned_cols=43 Identities=28% Similarity=0.268 Sum_probs=33.3
Q ss_pred CcchhhhHHHHHHHhcCCCcHHHHhhhccCCCcceeeecCCCCchHHHHHHHHhc
Q 025979 162 GGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 162 ~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~~~~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
+|-+..+++|.+.+... ...+-+.++||+|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 77788888888776431 12345889999999999999999863
No 405
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.10 E-value=0.023 Score=54.42 Aligned_cols=28 Identities=36% Similarity=0.619 Sum_probs=23.8
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||++++.+++..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3444459999999999999999999876
No 406
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.09 E-value=0.01 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+..-+.|.||||+|||+|.++|+...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34458999999999999999998755
No 407
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.08 E-value=0.022 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-+.|.||+|+|||+|.++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999844
No 408
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.01 E-value=0.025 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.5
Q ss_pred cceeeecCCCCchHHHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~ 215 (245)
-.|++.|++|+|||+|...+..
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3499999999999999988875
No 409
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.01 E-value=0.023 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|+|||+|+++|+..+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34448899999999999999999865
No 410
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.99 E-value=0.023 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
|+|.||+|+|||+|.+.+++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999998754
No 411
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.96 E-value=0.025 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.+.||.|+|||+|+++|+..+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34448899999999999999999865
No 412
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.93 E-value=0.028 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|||||+|...+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999998754
No 413
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.90 E-value=0.012 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=4.3
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|++.|++|+|||+|..++...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999988765
No 414
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.89 E-value=0.045 Score=43.94 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=16.0
Q ss_pred CcceeeecCCCCchHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAK 211 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAk 211 (245)
.+.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3679999999999997554
No 415
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.88 E-value=0.027 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.2
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-+.+.|+||+|||+|..++...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999865
No 416
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.88 E-value=0.038 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=20.7
Q ss_pred cc-eeeecCCCCchHHHHHHHHhcc
Q 025979 194 RG-VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~g-vLl~GPPGtGKT~lAkalA~~l 217 (245)
+| +++|+++|+|||++|-++|-.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA 52 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA 52 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 44 8899999999999999888655
No 417
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.87 E-value=0.03 Score=53.85 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.|.||+|+|||+|.+.|+..+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 33448899999999999999999876
No 418
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.86 E-value=0.026 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.1
Q ss_pred CCcc-eeeecCCCCchHHHHHHHHhc
Q 025979 192 PPRG-VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 192 ~~~g-vLl~GPPGtGKT~lAkalA~~ 216 (245)
+|.| |.+.|+||+|||+|..++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4445 889999999999999998764
No 419
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.86 E-value=0.036 Score=53.25 Aligned_cols=32 Identities=19% Similarity=0.480 Sum_probs=25.1
Q ss_pred Hhhhcc----CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 185 YKQIGI----DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 185 ~~~~g~----~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+...|+ +.|. +.+.||+|+|||++.++|++..
T Consensus 34 l~~~gv~~~l~lp~-iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 34 LRALGVEQDLALPA-IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp HHHHSCCSSCCCCC-EECCCCTTSCHHHHHHHHHSCC
T ss_pred HHhCCCCCcccCCe-EEEECCCCChHHHHHHHHhCCC
Confidence 455554 3343 8999999999999999999864
No 420
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.81 E-value=0.033 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.3
Q ss_pred CcceeeecCCCCchHHHHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVA 214 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA 214 (245)
++.+++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4569999999999997655443
No 421
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.76 E-value=0.12 Score=45.36 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=26.1
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc------cceeeeechh-HHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGS-EFVQKY 233 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l------~~~~~~v~~s-~l~~~~ 233 (245)
.+.+++.+|+|+|||+.+-..+-.. +...+.+.+. ++...+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~ 92 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 92 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHH
Confidence 4679999999999998764433322 3344555444 665544
No 422
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.76 E-value=0.019 Score=54.70 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=27.6
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccc--eeeeechh
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTA--AFIRVVGS 227 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~--~~~~v~~s 227 (245)
+.++.-+.+.||+|+|||++.+.+++.... --+.+++.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 403 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 344445899999999999999999987632 23445543
No 423
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.74 E-value=0.06 Score=44.67 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=15.8
Q ss_pred CcceeeecCCCCchHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAK 211 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAk 211 (245)
.+.+++.+|+|+|||+.+-
T Consensus 67 ~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp TCCEEECCCSSHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3669999999999998643
No 424
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.73 E-value=0.038 Score=47.18 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=20.4
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|++.|.||+|||+|..++.+.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 49999999999999999998643
No 425
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.033 Score=46.00 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=19.1
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.|++.|+||||||+|...+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999874
No 426
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.68 E-value=0.033 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.3
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..|+|.|+||+|||+|..++...
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999754
No 427
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.66 E-value=0.064 Score=45.97 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=29.0
Q ss_pred cceeeecCCCCchHHHHHHHHhcccceeeeechh-HHHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS-EFVQKY 233 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l~~~~~~v~~s-~l~~~~ 233 (245)
+.+++.+|+|+|||+++-..+-..+...+.+.+. ++...+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHH
Confidence 5699999999999998776666556666656554 565544
No 428
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.65 E-value=0.037 Score=50.34 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=31.0
Q ss_pred cceeeecCCCCchHHHHHHHHhcc---cceeeeechh-HHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS-EFVQKYL 234 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s-~l~~~~~ 234 (245)
.+++++||||+|||.+.+.+...+ +..++.+|.. ++...|.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~~~~ 98 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFG 98 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhHHhc
Confidence 569999999999999988777654 6677777754 6655553
No 429
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.65 E-value=0.053 Score=52.54 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=25.1
Q ss_pred cCCCcceeeecCCCCchHHHHH-HHHhc---ccceeeeechh
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAK-AVANH---TTAAFIRVVGS 227 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAk-alA~~---l~~~~~~v~~s 227 (245)
+...+.+++.||+|+|||+.+- ++... -+...+.+.+.
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~ 84 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPL 84 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCc
Confidence 3446779999999999999884 33222 24455555544
No 430
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.038 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.6
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.-+.|.||+|+|||+|.+.|+..+
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 348899999999999999999876
No 431
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.53 E-value=0.026 Score=53.98 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.2
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+.++.-+.+.||+|+|||++++.+++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 34445599999999999999999998763
No 432
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.53 E-value=0.036 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.1
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|+|.|+||+|||+|..++...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 34999999999999999998754
No 433
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.52 E-value=0.033 Score=53.56 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
++.-+.+.||+|+|||+|.++|+..+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33448899999999999999999865
No 434
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.51 E-value=0.042 Score=50.13 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=22.8
Q ss_pred CcceeeecCCCCchHHHHHHHHhcccc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHTTA 219 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l~~ 219 (245)
+.-.+|+||.|+|||++..+|+..++.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 344889999999999999999976643
No 435
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.40 E-value=0.015 Score=52.16 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=21.4
Q ss_pred cCCCcc-eeeecCCCCchHHHHHHHHh
Q 025979 190 IDPPRG-VLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 190 ~~~~~g-vLl~GPPGtGKT~lAkalA~ 215 (245)
++...| .+|+||+|+|||++..||.-
T Consensus 21 i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 21 IKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344445 78999999999999999985
No 436
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.32 E-value=0.04 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.8
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+.+.|+||+|||+|..++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 38899999999999999998643
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.025 Score=54.46 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.5
Q ss_pred eeeecCCCCchHHHHHHHHhcc
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l 217 (245)
+.|.||+|+|||+|.++|+..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999999865
No 438
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.23 E-value=0.019 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.6
Q ss_pred cceeeecCCCCchHHHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~ 215 (245)
-.|++.|+||+|||+|..++..
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999998874
No 439
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.19 E-value=0.041 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.0
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+.+.|+||+|||+|..++....
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 358999999999999999998753
No 440
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.16 E-value=0.18 Score=41.41 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=25.0
Q ss_pred CcceeeecCCCCchHHHHH-HHHhcc-----cceeeeechh-HHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAK-AVANHT-----TAAFIRVVGS-EFVQKY 233 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAk-alA~~l-----~~~~~~v~~s-~l~~~~ 233 (245)
.+.+++.+|+|+|||..+- .+...+ +...+.+.+. ++...+
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHH
Confidence 4679999999999998633 333332 2344444443 555443
No 441
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.10 E-value=0.043 Score=48.86 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.0
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+++.|+||+|||+|..+++...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998753
No 442
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=93.07 E-value=0.075 Score=45.28 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=28.3
Q ss_pred ceeeecCCCCchHHHHHHHHhcc----cceeeeech-hHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVG-SEFVQKYLG 235 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~-s~l~~~~~G 235 (245)
..++.+|+|+|||.++-+++... +.+.+.+.+ .+++..+..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 175 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMAD 175 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH
Confidence 35779999999999998777643 225555554 477666543
No 443
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.94 E-value=0.031 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.5
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..|++.|++|+|||+|..++...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 34999999999999999999865
No 444
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.88 E-value=0.079 Score=47.25 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=31.7
Q ss_pred ceeeecCCCCchHHHHHHHHhcc----cceeeeechh-HHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGS-EFVQKYLGE 236 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s-~l~~~~~Ge 236 (245)
++++.+|+|+|||+.+-+++... +...+.+.+. +++..|..+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~ 71 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAES 71 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHH
Confidence 78999999999999988876654 5566666665 777666443
No 445
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.01 E-value=0.019 Score=46.14 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.6
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.|++.|+||+|||+|..++..
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 499999999999999987764
No 446
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.81 E-value=0.062 Score=46.33 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|.+.|+||+|||+|..++.+.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 4999999999999999999765
No 447
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.80 E-value=0.058 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.1
Q ss_pred cceeeecCCCCchHHHHHHHHh
Q 025979 194 RGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~ 215 (245)
..+.|.||||+|||+|.++|++
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3488999999999999999998
No 448
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=92.79 E-value=0.02 Score=51.55 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.8
Q ss_pred ceeeecCCCCchHHHHHHHHhccc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
-+.|+||+|+|||+|.++|+..++
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976554
No 449
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.73 E-value=0.066 Score=44.21 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=23.0
Q ss_pred eeeecCCCCchH-HHHHHHHhcc--cceeeeec
Q 025979 196 VLLYGPPGTGKT-MLAKAVANHT--TAAFIRVV 225 (245)
Q Consensus 196 vLl~GPPGtGKT-~lAkalA~~l--~~~~~~v~ 225 (245)
.++|||.|+||| .|.+++.+.. +...+.+.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 778999999999 8999888755 44455443
No 450
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.73 E-value=0.044 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.0
Q ss_pred ceeeecCCCCchHHHHHHHHhcc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-.+|+||+|+|||++..||.-.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999999998543
No 451
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.72 E-value=0.1 Score=43.79 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.1
Q ss_pred CcceeeecCCCCchHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAK 211 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAk 211 (245)
.+.+++.+|+|+|||+.+-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 4679999999999998643
No 452
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.70 E-value=0.03 Score=45.61 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=17.3
Q ss_pred ceeeecCCCCchHHHHHHH
Q 025979 195 GVLLYGPPGTGKTMLAKAV 213 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkal 213 (245)
.|++.|++|+|||+|...+
T Consensus 17 ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp EEEEEECTTSSHHHHHTTB
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4999999999999999983
No 453
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.69 E-value=0.07 Score=43.49 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.5
Q ss_pred cceeeecCCCCchHHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAK 211 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAk 211 (245)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998643
No 454
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.57 E-value=0.048 Score=55.32 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=21.3
Q ss_pred CCCcceeeecCCCCchHHHHHHHHh
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
.++.-+.|.||+|+|||+|.+.|++
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444589999999999999999994
No 455
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.51 E-value=0.11 Score=45.35 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=17.2
Q ss_pred CCcceeeecCCCCchHHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKA 212 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAka 212 (245)
.++.+++.+|+|+|||+.+-.
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 347799999999999986543
No 456
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.44 E-value=0.09 Score=45.10 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=27.2
Q ss_pred CCcceeeecC-CCCchHHHHHHHHhcc---cceeeeechh
Q 025979 192 PPRGVLLYGP-PGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 192 ~~~gvLl~GP-PGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
.++-++++|+ ||+|||++|-.+|..+ |..++-|++.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3456888876 8999999998888766 6666666654
No 457
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.43 E-value=0.18 Score=44.56 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=16.4
Q ss_pred cceeeecCCCCchHHHHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAV 213 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkal 213 (245)
+.+++.+|+|+|||+.+-..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHH
Confidence 56999999999999865443
No 458
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.34 E-value=0.068 Score=44.32 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=18.5
Q ss_pred eeeecCCCCchHHHHHHHHh
Q 025979 196 VLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~ 215 (245)
|+|.|.+|||||+|...+..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 99999999999999998874
No 459
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.29 E-value=0.096 Score=48.55 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=18.7
Q ss_pred eeeecCCCCchHHHHHHHHhc
Q 025979 196 VLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~ 216 (245)
.++.||||||||++.+.++..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT
T ss_pred EEEEcCCCCCHHHHHHHHhcc
Confidence 778999999999999888764
No 460
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.28 E-value=0.085 Score=45.93 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=26.6
Q ss_pred CCcceeeecC-CCCchHHHHHHHHhcc---cceeeeech
Q 025979 192 PPRGVLLYGP-PGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 192 ~~~gvLl~GP-PGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
.++.+++.|+ ||+|||++|..+|..+ |..++-|++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~ 141 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDA 141 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4466888887 8999999998888765 566666654
No 461
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=92.26 E-value=0.14 Score=48.34 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=24.3
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc------------cceeeeech-hHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT------------TAAFIRVVG-SEFVQKYL 234 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l------------~~~~~~v~~-s~l~~~~~ 234 (245)
.+++|+++|+|+|||.++-.++..+ +..++.+.+ .+|...+.
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---------
T ss_pred CCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH
Confidence 3568999999999999987777653 234444444 67776665
No 462
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.25 E-value=0.14 Score=41.79 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.0
Q ss_pred CcceeeecCCCCchHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAK 211 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAk 211 (245)
.+.+++.+|+|+|||+.+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4679999999999998654
No 463
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.14 E-value=0.061 Score=48.16 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.8
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.|++.|++|+|||+|..+|..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 489999999999999999754
No 464
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.13 E-value=0.07 Score=43.66 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=21.1
Q ss_pred CcceeeecCCCCchHHHHHHHHhcc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.+-.+++||+|+|||+.+-.+|..+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999888777665
No 465
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.08 E-value=0.11 Score=46.12 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=24.5
Q ss_pred CCcc-eeeecCCCCchHHHHHHHHhcc---cceeeeec
Q 025979 192 PPRG-VLLYGPPGTGKTMLAKAVANHT---TAAFIRVV 225 (245)
Q Consensus 192 ~~~g-vLl~GPPGtGKT~lAkalA~~l---~~~~~~v~ 225 (245)
+.+. +++.|.+|+|||++|-++|..+ |...+-++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3344 5566999999999999998765 55555554
No 466
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.06 E-value=0.069 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.3
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
-.|++.|++|+|||+|..++.+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999854
No 467
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.02 E-value=0.046 Score=55.44 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=23.7
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
+.++.-+.+.||+|+|||+|.+.|+..+
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444558999999999999999999876
No 468
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=92.01 E-value=0.22 Score=45.89 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=29.2
Q ss_pred cceeeecCCCCchHHHHHHHHhcc----cceeeeechh-HHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVVGS-EFVQKYLG 235 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l----~~~~~~v~~s-~l~~~~~G 235 (245)
+.+|++||+|+|||.++-.++... +...+.+.+. ++...+..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~ 175 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMAD 175 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHH
Confidence 568999999999999987666542 3255555544 67665543
No 469
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.94 E-value=0.1 Score=49.57 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
+.+-+++.|.+|+|||++|-++|..+ |...+.|+..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 44557888999999999999988766 5565555543
No 470
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=91.84 E-value=0.057 Score=49.57 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.2
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
..-+.|.||||+|||+|.++++..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 344889999999999999999876
No 471
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.74 E-value=0.14 Score=47.06 Aligned_cols=42 Identities=14% Similarity=0.358 Sum_probs=29.5
Q ss_pred cceeeecCCCCchHHHHHHHHhcc--------cceeeeechh-HHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT--------TAAFIRVVGS-EFVQKYLG 235 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l--------~~~~~~v~~s-~l~~~~~G 235 (245)
+.+++.+|+|+|||..+-..+-.. +...+.+.+. +++..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 70 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQAT 70 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHH
Confidence 569999999999999866655433 5556666655 77665543
No 472
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.74 E-value=0.21 Score=43.14 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=32.5
Q ss_pred CcchhhhHHHHHHHhcCCCcHHHHhhhcc-CCCcceeeecCCCCchHHHHHHHHhcc
Q 025979 162 GGCDIQKQEIREAVELPLTHHELYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 162 ~Gl~~~~~~i~e~i~~~~~~~~~~~~~g~-~~~~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
.|.++..+.+.+.+... .+....-|. ..+-.+++.|.||+|||++..++.+.-
T Consensus 91 ~gi~~L~~~i~~~l~~~---~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 91 QGLNQIVPASKEILQEK---FDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp TTGGGHHHHHHHHHHHH---HHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHH---HHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCc
Confidence 45666666666655321 011122232 233459999999999999999997643
No 473
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.72 E-value=0.08 Score=45.32 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.8
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
..+++.|+||+|||++..++....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 358999999999999999998644
No 474
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.70 E-value=0.15 Score=44.21 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCcceeeecC-CCCchHHHHHHHHhcc---cceeeeechh
Q 025979 192 PPRGVLLYGP-PGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 192 ~~~gvLl~GP-PGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
.++-|+++|+ ||+|||++|-.+|..+ |..++-|++.
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 3456777765 8999999999888766 6666666643
No 475
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=91.57 E-value=0.087 Score=50.12 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.3
Q ss_pred cceeeecCCCCchHHHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKA 212 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAka 212 (245)
..+++.||||||||+++-.
T Consensus 23 ~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 23 SNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp SCEEEEECTTSCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH
Confidence 3488999999999996543
No 476
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.57 E-value=0.13 Score=42.69 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=16.0
Q ss_pred CcceeeecCCCCchHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAK 211 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAk 211 (245)
.+.+++.+|+|+|||+.+-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 3579999999999998744
No 477
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.55 E-value=0.019 Score=46.03 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.6
Q ss_pred ceeeecCCCCchHHHHHHHHh
Q 025979 195 GVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~ 215 (245)
.|++.|++|+|||+|..++..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999988764
No 478
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=91.55 E-value=0.08 Score=45.13 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.5
Q ss_pred cceeeecCCCCchHHHHHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAKAVA 214 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA 214 (245)
-.|++.|+||+|||+|..++.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999998864
No 479
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.40 E-value=0.13 Score=44.99 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=15.0
Q ss_pred cceeeecCCCCchHHHH
Q 025979 194 RGVLLYGPPGTGKTMLA 210 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lA 210 (245)
+.+++.+|+|+|||+.+
T Consensus 59 ~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 56999999999999874
No 480
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=91.33 E-value=0.11 Score=47.32 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.5
Q ss_pred CcceeeecCCCCchHHHHHHHHhc
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
+..+.|.|+||+|||+|..++.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 345899999999999999999875
No 481
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.32 E-value=0.34 Score=43.20 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=24.9
Q ss_pred CcceeeecCCCCchHHHHHHHHhc---ccceeeeech-hHHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVANH---TTAAFIRVVG-SEFVQKY 233 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~~---l~~~~~~v~~-s~l~~~~ 233 (245)
.+.+++.+|+|+|||+++-..+-. -+...+.+.+ .++...+
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence 357999999999999955444333 2333444443 3554433
No 482
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.31 E-value=0.12 Score=44.46 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHhcc---cceeeeechh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~s 227 (245)
..+-+.++|-.|+|||++|-.+|..+ |..++-|+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34557788999999999998888766 5666666543
No 483
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.30 E-value=0.13 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=18.4
Q ss_pred CcceeeecCCCCchHHHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
...+++.||+|+|||++...+..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999997666643
No 484
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.26 E-value=0.17 Score=46.69 Aligned_cols=42 Identities=19% Similarity=0.404 Sum_probs=29.1
Q ss_pred cceeeecCCCCchHHHHHHHHhcc--------cceeeeechh-HHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT--------TAAFIRVVGS-EFVQKYLG 235 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l--------~~~~~~v~~s-~l~~~~~G 235 (245)
+.+++.+|+|+|||..+-..+-.. +...+.+.+. +++..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 73 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKN 73 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHH
Confidence 569999999999999876555433 4555656554 67665543
No 485
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.21 E-value=0.098 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.9
Q ss_pred cceeeecCCCCchHHHHHHHHhcc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANHT 217 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~l 217 (245)
-.|++.|++|+|||+|..++...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998643
No 486
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.14 E-value=0.11 Score=50.41 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=24.6
Q ss_pred CCCcceeeecCCCCchHHHH-HHHHhcc---cceeeeechh
Q 025979 191 DPPRGVLLYGPPGTGKTMLA-KAVANHT---TAAFIRVVGS 227 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lA-kalA~~l---~~~~~~v~~s 227 (245)
...+.+++.||+|+|||+++ -++...+ +...+.+.+.
T Consensus 37 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~ 77 (720)
T 2zj8_A 37 LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPL 77 (720)
T ss_dssp GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSS
T ss_pred cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 34577999999999999987 3433322 4455555543
No 487
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.14 E-value=0.2 Score=46.47 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred ceeeecCCCCchHHHHHHHHhc
Q 025979 195 GVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.|.+.|+||+|||+|..++...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3999999999999999998864
No 488
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.13 E-value=0.11 Score=45.51 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=23.2
Q ss_pred eeeecCCCCchHHHHHHHHhcc---cceeeeech
Q 025979 196 VLLYGPPGTGKTMLAKAVANHT---TAAFIRVVG 226 (245)
Q Consensus 196 vLl~GPPGtGKT~lAkalA~~l---~~~~~~v~~ 226 (245)
+++.|.+|+|||++|.++|..+ |...+-|+.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 5566999999999999998765 555554543
No 489
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.08 E-value=0.18 Score=41.92 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.4
Q ss_pred cceeeecCCCCchHHHHH
Q 025979 194 RGVLLYGPPGTGKTMLAK 211 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAk 211 (245)
+.+++.+|+|+|||+.+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998643
No 490
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.00 E-value=0.29 Score=43.32 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.3
Q ss_pred CcceeeecCCCCchHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLA 210 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lA 210 (245)
.+.+++.+|+|+|||+.+
T Consensus 52 ~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHH
Confidence 467999999999999843
No 491
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=90.89 E-value=0.12 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred cceeeecCCCCchHHHHHHHHhc
Q 025979 194 RGVLLYGPPGTGKTMLAKAVANH 216 (245)
Q Consensus 194 ~gvLl~GPPGtGKT~lAkalA~~ 216 (245)
.-+++.||+|+|||++.|.+|..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 34889999999999999999864
No 492
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.85 E-value=0.16 Score=44.77 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=16.0
Q ss_pred CcceeeecCCCCchHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLA 210 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lA 210 (245)
++.+++.+|+|+|||+.+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 477999999999999875
No 493
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.76 E-value=0.17 Score=47.53 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.9
Q ss_pred ceeeecCCCCchHHH-HHHHHhccccee
Q 025979 195 GVLLYGPPGTGKTML-AKAVANHTTAAF 221 (245)
Q Consensus 195 gvLl~GPPGtGKT~l-AkalA~~l~~~~ 221 (245)
.++++|++|||||.| ...|++..+..+
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv 191 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDV 191 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSE
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCc
Confidence 399999999999999 569998886554
No 494
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.74 E-value=0.12 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.2
Q ss_pred CCcceeeecCCCCchHHHHHHHH
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVA 214 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA 214 (245)
....+||.|++|+|||+++|.+.
T Consensus 32 ~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHH
Confidence 34569999999999999999985
No 495
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=90.70 E-value=0.11 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCcceeeecCCCCchHHHHHHHHh
Q 025979 192 PPRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 192 ~~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
..-.+++.|+||+|||+|...+..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCChHHHHHHHHh
Confidence 334599999999999999988874
No 496
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.68 E-value=0.11 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.9
Q ss_pred CcceeeecCCCCchHHHHHHHHh
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVAN 215 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA~ 215 (245)
+.-+++.||.|+|||++.|.+|.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34488999999999999999874
No 497
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.66 E-value=0.097 Score=54.52 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=27.4
Q ss_pred cCCCcceeeecCCCCchHHHHHHHHhcccc--eeeeech
Q 025979 190 IDPPRGVLLYGPPGTGKTMLAKAVANHTTA--AFIRVVG 226 (245)
Q Consensus 190 ~~~~~gvLl~GPPGtGKT~lAkalA~~l~~--~~~~v~~ 226 (245)
+.++.-+.++||+|+|||+|++.|++.... --+.+++
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g 451 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 344455999999999999999999987632 2344444
No 498
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.63 E-value=0.3 Score=43.26 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=25.2
Q ss_pred CcceeeecCCCCchHHHHHHHH-hcc-----cceeeeechh-HHHHHH
Q 025979 193 PRGVLLYGPPGTGKTMLAKAVA-NHT-----TAAFIRVVGS-EFVQKY 233 (245)
Q Consensus 193 ~~gvLl~GPPGtGKT~lAkalA-~~l-----~~~~~~v~~s-~l~~~~ 233 (245)
.+.+++.+|+|+|||+.+-..+ ..+ +...+.+.+. ++...+
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~ 121 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 121 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHH
Confidence 4669999999999997655333 221 3444445443 555443
No 499
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.57 E-value=0.18 Score=48.25 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.9
Q ss_pred ceeeecCCCCchHHHHHHHHhcccce
Q 025979 195 GVLLYGPPGTGKTMLAKAVANHTTAA 220 (245)
Q Consensus 195 gvLl~GPPGtGKT~lAkalA~~l~~~ 220 (245)
.++++||+|||||.|+..||+..+..
T Consensus 234 r~~Ifgg~g~GKT~L~~~ia~~~~~~ 259 (600)
T 3vr4_A 234 AAAVPGPFGAGKTVVQHQIAKWSDVD 259 (600)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSSCS
T ss_pred EEeeecCCCccHHHHHHHHHhccCCC
Confidence 39999999999999999999977544
No 500
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.52 E-value=0.12 Score=54.11 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCcceeeecCCCCchHHHHHHHHhccc
Q 025979 191 DPPRGVLLYGPPGTGKTMLAKAVANHTT 218 (245)
Q Consensus 191 ~~~~gvLl~GPPGtGKT~lAkalA~~l~ 218 (245)
+++.-+.++||+|+|||+|++.|.+...
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4444499999999999999999999873
Done!