BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025980
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 41/215 (19%)
Query: 28 TGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTH--- 84
+ LV+VD+ NGF GNLA + + I IN+ LA F + L D H
Sbjct: 31 SALVVVDVQNGFTP--GGNLAVADADTIIP-TINQ---LAGCFENVVLTQDWHPDNHISF 84
Query: 85 ---HPNK-----------PEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGY 130
HP K + +P HCI GTH++ P L + + D Y
Sbjct: 85 AANHPGKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSY 144
Query: 131 FGSIEDDGSNV--FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVV 188
+E D + + ++K I + VVG+ TD CV + + A +GF + +
Sbjct: 145 SAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCV---AWTALDAVKQGF-----KTL 196
Query: 189 VYSAACATFDIPTHVATHTKGALAHPQEFMHHVGL 223
V AC D+ G+L + M G+
Sbjct: 197 VIEDACKGIDL--------NGSLEQAWQTMQQQGV 223
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The
Pyrazinamidase From M.Tuberculosis : A
Structure-Function Analysis For Prediction Resistance To
Pyrazinamide
Length = 186
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 38/155 (24%)
Query: 30 LVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKP 89
L++VD+ N FC G+LA + A LARA D + D HH
Sbjct: 4 LIIVDVQNDFCE--GGSLA-----------VTGGAALARAISDY---LAEAADYHHVVAT 47
Query: 90 ED-----------------PYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFG 132
+D +P HC++GT ++ P+L E + K + G +
Sbjct: 48 KDFHIDPGDHFSGTPDYSSSWPPHCVSGTPGADFHPSLDTSAIE---AVFYKGAYTGAYS 104
Query: 133 SIE--DDGSNVFVDWVKNHQIRKLVVVGVCTDICV 165
E D+ ++W++ + ++ VVG+ TD CV
Sbjct: 105 GFEGVDENGTPLLNWLRQRGVDEVDVVGIATDHCV 139
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 40/215 (18%)
Query: 28 TGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTH--- 84
+ LV+VD+ NGF GNLA + + I IN+ LA F + L D H
Sbjct: 8 SALVVVDVQNGFTP--GGNLAVADADTIIP-TINQ---LAGCFENVVLTQDWHPDNHISF 61
Query: 85 ---HPNK-----------PEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGY 130
HP K + +P HCI GTH++ P L + + D Y
Sbjct: 62 AANHPGKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSY 121
Query: 131 FGSIEDDGSNV--FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVV 188
+E D + + ++K I + VVG+ TD C + + + + A +GF + +
Sbjct: 122 SAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCXVAW--TALDAVKQGF-----KTL 174
Query: 189 VYSAACATFDIPTHVATHTKGALAHPQEFMHHVGL 223
V AC D+ G+L + M G+
Sbjct: 175 VIEDACKGIDL--------NGSLEQAWQTMQQQGV 201
>pdb|3R2J|A Chain A, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|B Chain B, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|C Chain C, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|D Chain D, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
Length = 227
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 92 PYPTHCIAGTHESNLVPALQWIEKEPNVTIRR--KDCFDGYFGSIEDDG-SNVFVDWVKN 148
P+P HC+ G+ + L L + N IR+ D Y +ED+G S + +
Sbjct: 97 PWPPHCVQGSAGAQLHAGLH--TQRINAVIRKGVTQQADSYSAFVEDNGVSTGLAGLLHS 154
Query: 149 HQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEE 186
R++ V GV D CV + M AR GF L E
Sbjct: 155 IGARRVFVCGVAYDFCVF---FTAMDARKNGFSVVLLE 189
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 26 VVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHH 85
+ L+ +D F +G L P + IS I++ RLA +R + +D H
Sbjct: 21 MTKALISIDYTEDFV-ADSGKLTAGAPAQAISDAISKVTRLA---FERGDYIFFTIDAHE 76
Query: 86 PNK---PEDP-YPTHCIAGTHESNLVPALQWIEKEPNVTIR----RKDCFDGYFGSIEDD 137
N PE +P H + GT NL L +E R K + + G+ D
Sbjct: 77 ENDCFHPESKLFPPHNLIGTSGRNLYGDLGIFYQEHGSDSRVFWMDKRHYSAFSGTDLDI 136
Query: 138 GSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGF 180
++ ++ +++ GV TDICVL + + A N G+
Sbjct: 137 R-------LRERRVSTVILTGVLTDICVLH---TAIDAYNLGY 169
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
pdb|3EEF|B Chain B, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
Length = 182
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 30 LVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKP 89
LV+VD +N F G LA E + + + ++ F LPV+ D+H+P+ P
Sbjct: 5 LVVVDXVNEFIH---GRLATPEAXK----TVGPARKVIETFRRSGLPVVYVNDSHYPDDP 57
Query: 90 E-DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKN 148
E + H G S ++ I + K + G++G+ D ++
Sbjct: 58 EIRIWGRHSXKGDDGSEVIDE---IRPSAGDYVLEKHAYSGFYGTNLD-------XILRA 107
Query: 149 HQIRKLVVVGVCTDICV 165
+ I +V++G+ DICV
Sbjct: 108 NGIDTVVLIGLDADICV 124
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 45 GNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPEDP----YPTHCIAG 100
G L +P + IS I A++ + D + +D H P +P H I G
Sbjct: 53 GKLTAGKPAQAISKAI---AQVTQKAYDNGDYIFFTIDGHDEGDDFHPETKLFPPHNIKG 109
Query: 101 THESNLVPAL----QWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVV 156
T +L AL Q E + V K + + G+ D ++ ++ +V+
Sbjct: 110 TSGRDLYGALADFYQKHENDKRVFWMDKRHYSAFSGTDLDI-------RLRERRVDTVVL 162
Query: 157 VGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 202
GV TDICVL + + A N G+ ++ V +A A+ H
Sbjct: 163 TGVLTDICVL---HTAIDAYNLGY-----QIEVVQSAVASLSQENH 200
>pdb|3OT4|A Chain A, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|B Chain B, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|C Chain C, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|D Chain D, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|E Chain E, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|F Chain F, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|G Chain G, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|H Chain H, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3UAO|A Chain A, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|B Chain B, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|C Chain C, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|D Chain D, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|E Chain E, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|F Chain F, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|G Chain G, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|H Chain H, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
Length = 236
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 47/173 (27%)
Query: 29 GLVLVDIINGF---CTVGAGNLAPR-EPNRQISGMINES------ARLARAFCDR----- 73
GL++VD +NGF G GN+A E R + E +R+ A D
Sbjct: 46 GLLIVDFVNGFADPAQFGGGNIAAAIETTRTVLAAARERGWAVAHSRIVYADDDADGNIF 105
Query: 74 --RLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYF 131
++P M L H P S +VP L + + RK ++
Sbjct: 106 SIKVPGMLTLKEHAP----------------ASAIVPQL---APQAGEYVVRKSTPSAFY 146
Query: 132 GSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPL 184
G++ W+ ++ L+V G T V V MSA GF RPL
Sbjct: 147 GTM-------LAAWLAQRGVQTLLVAGATTSGXVRASVVDAMSA---GF-RPL 188
>pdb|1YAC|A Chain A, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
pdb|1YAC|B Chain B, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
Length = 208
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 132 GSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYS 191
G+I + FV VK ++L++ GV T++CV +SA GF +V V +
Sbjct: 86 GNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCV---AFPALSAIEEGF-----DVFVVT 137
Query: 192 AACATFD 198
A TF+
Sbjct: 138 DASGTFN 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,221,263
Number of Sequences: 62578
Number of extensions: 290037
Number of successful extensions: 572
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 11
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)