BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025980
         (245 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O32091|PNCA_BACSU Uncharacterized isochorismatase family protein PncA OS=Bacillus
           subtilis (strain 168) GN=pncA PE=3 SV=1
          Length = 183

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 78/181 (43%), Gaps = 27/181 (14%)

Query: 30  LVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKP 89
           L+ +D  N F     G L   EP R I   I     L + F      V+  +D+H     
Sbjct: 5   LICIDYTNDF-VASDGKLTCGEPGRMIEEAI---VNLTKEFITNGDYVVLAVDSHDEGDQ 60

Query: 90  EDP----YPTHCIAGTHESNL----VPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNV 141
             P    +P H I GT   +L    +P  Q  E EPNV    K  +  + G+  +     
Sbjct: 61  YHPETRLFPPHNIKGTEGKDLYGKLLPLYQKHEHEPNVYYMEKTRYSAFAGTDLELK--- 117

Query: 142 FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPT 201
               ++  QI +L + GVCTDICVL    + + A N+GF      +VV+  A A+F+   
Sbjct: 118 ----LRERQIGELHLAGVCTDICVLH---TAVDAYNKGF-----RIVVHKQAVASFNQEG 165

Query: 202 H 202
           H
Sbjct: 166 H 166


>sp|P21369|PNCA_ECOLI Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12)
           GN=pncA PE=3 SV=1
          Length = 213

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 40/164 (24%)

Query: 30  LVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNK- 88
           L+LVD+ N FC  GA  LA  E +      ++ + RL      R   V+A  D H  N  
Sbjct: 6   LLLVDLQNDFCAGGA--LAVPEGDS----TVDVANRLIDWCQSRGEAVIASQDWHPANHG 59

Query: 89  -------------------PEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRK----- 124
                              P+  +P HC+  +  + L P L   +K       +      
Sbjct: 60  SFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLH--QKAIAAVFHKGENPLV 117

Query: 125 DCFDGYFGSIEDDG---SNVFVDWVKNHQIRKLVVVGVCTDICV 165
           D +  +F    D+G        DW+++H+I +L+V+G+ TD CV
Sbjct: 118 DSYSAFF----DNGRRQKTSLDDWLRDHEIDELIVMGLATDYCV 157


>sp|P42201|LYAM3_BOVIN P-selectin OS=Bos taurus GN=SELP PE=2 SV=1
          Length = 646

 Score = 33.9 bits (76), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 100 GTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGS-NVFVDWVKNHQIRKLVVVG 158
           GT ++    A  W + EPN     +DC + Y  S+   G  N    W +    R L    
Sbjct: 105 GTKKTLTEEAENWADNEPNNKRNNQDCVEIYIKSLSAPGKWNDEPCWKRK---RALCYRA 161

Query: 159 VCTDIC----------VLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTK 208
            C D+           + ++ CS       GF  P  E   Y   C  FD+P HV  +  
Sbjct: 162 SCQDMSCSKQGECIETIGNYTCSCYP----GFYGPECE---YVRECGEFDLPQHVHMNCS 214

Query: 209 GALAHPQEFMHHVGLYMAK 227
             L +   F  H   + A+
Sbjct: 215 HPLGN-FSFNSHCSFHCAE 232


>sp|P98106|LYAM3_RAT P-selectin OS=Rattus norvegicus GN=Selp PE=2 SV=1
          Length = 768

 Score = 33.5 bits (75), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 100 GTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGV 159
           GT+++    A  W + EPN     +DC + Y  S    G   + D     + R L     
Sbjct: 105 GTNKTLTAEAENWADNEPNNKRNNQDCVEIYIKSNSAPGK--WNDEPCFKRKRALCYTAS 162

Query: 160 CTDICV------LDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHV 203
           C D+        ++ + S   +   GF  P  E   Y   C  FDIP HV
Sbjct: 163 CQDMSCNSQGERIETIGSYTCSCYPGFYGPECE---YVQECGKFDIPQHV 209


>sp|Q4L4U2|NAGD_STAHJ Protein NagD homolog OS=Staphylococcus haemolyticus (strain
           JCSC1435) GN=nagD PE=3 SV=1
          Length = 263

 Score = 32.3 bits (72), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 127 FDG--YFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCT 161
            DG  Y G+ E DG+  F+D++ NHQI  L V    T
Sbjct: 11  LDGTMYLGTDEIDGAAQFIDYLNNHQIPHLYVTNNST 47


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,008,727
Number of Sequences: 539616
Number of extensions: 3931330
Number of successful extensions: 7604
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7597
Number of HSP's gapped (non-prelim): 5
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)