Query 025980
Match_columns 245
No_of_seqs 214 out of 1261
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02743 nicotinamidase 100.0 8.3E-53 1.8E-57 364.2 24.5 238 1-238 1-238 (239)
2 PRK11609 nicotinamidase/pyrazi 100.0 2.2E-41 4.7E-46 288.5 18.2 185 26-243 1-211 (212)
3 TIGR03614 RutB pyrimidine util 100.0 5.1E-40 1.1E-44 282.9 17.4 195 13-243 2-219 (226)
4 PTZ00331 alpha/beta hydrolase; 100.0 7E-39 1.5E-43 273.4 17.4 180 17-240 3-210 (212)
5 cd01011 nicotinamidase Nicotin 100.0 5.9E-39 1.3E-43 270.6 16.2 171 27-234 1-196 (196)
6 PRK11440 putative hydrolase; P 100.0 7.5E-39 1.6E-43 268.1 16.6 177 22-242 4-187 (188)
7 cd01013 isochorismatase Isocho 100.0 1.6E-38 3.5E-43 269.4 17.3 180 16-237 19-203 (203)
8 cd01015 CSHase N-carbamoylsarc 100.0 1.3E-38 2.8E-43 264.7 15.3 171 29-240 1-178 (179)
9 PLN02621 nicotinamidase 100.0 1.2E-37 2.5E-42 262.9 16.2 174 19-241 13-192 (197)
10 PF00857 Isochorismatase: Isoc 100.0 8.2E-38 1.8E-42 257.3 13.4 169 28-238 1-174 (174)
11 COG1335 PncA Amidases related 100.0 2.4E-37 5.1E-42 261.6 16.0 180 26-239 4-198 (205)
12 cd00431 cysteine_hydrolases Cy 100.0 2.6E-34 5.7E-39 233.8 14.8 149 29-201 1-152 (161)
13 cd01014 nicotinamidase_related 100.0 1.6E-33 3.5E-38 229.1 15.8 153 29-220 1-153 (155)
14 cd01012 YcaC_related YcaC rela 100.0 8.1E-34 1.8E-38 231.3 11.9 152 29-241 1-153 (157)
15 COG1535 EntB Isochorismate hyd 100.0 1.4E-30 3E-35 211.2 11.8 186 13-242 17-209 (218)
16 KOG4003 Pyrazinamidase/nicotin 99.9 3.9E-27 8.5E-32 190.8 10.4 157 28-202 2-195 (223)
17 KOG4044 Mitochondrial associat 99.8 1.4E-18 3.1E-23 139.5 12.8 159 21-242 10-169 (201)
18 PF02739 5_3_exonuc_N: 5'-3' e 56.1 10 0.00022 31.0 2.6 43 141-191 90-132 (169)
19 PRK08329 threonine synthase; V 46.8 38 0.00083 30.9 5.1 61 121-192 74-135 (347)
20 PRK06381 threonine synthase; V 45.8 44 0.00095 29.9 5.3 53 132-194 44-96 (319)
21 COG3356 Predicted membrane pro 42.3 1.3E+02 0.0027 29.7 7.8 26 140-166 458-487 (578)
22 TIGR01274 ACC_deam 1-aminocycl 39.5 77 0.0017 28.6 5.9 40 146-194 61-101 (337)
23 cd06446 Trp-synth_B Tryptophan 39.2 76 0.0016 29.1 5.8 39 146-193 77-115 (365)
24 cd01561 CBS_like CBS_like: Thi 38.0 60 0.0013 28.5 4.8 65 121-194 19-86 (291)
25 TIGR01275 ACC_deam_rel pyridox 36.3 97 0.0021 27.5 5.9 40 146-194 51-91 (311)
26 cd06448 L-Ser-dehyd Serine deh 36.3 60 0.0013 29.2 4.6 41 144-194 41-84 (316)
27 PRK12390 1-aminocyclopropane-1 36.1 85 0.0018 28.3 5.6 41 144-193 60-101 (337)
28 TIGR01415 trpB_rel pyridoxal-p 35.7 77 0.0017 29.9 5.3 67 142-237 108-174 (419)
29 PRK10098 putative dehydrogenas 32.9 51 0.0011 30.4 3.6 45 27-86 77-121 (350)
30 cd00640 Trp-synth-beta_II Tryp 31.7 78 0.0017 26.9 4.4 65 121-194 17-83 (244)
31 PRK07591 threonine synthase; V 31.1 99 0.0021 29.0 5.3 62 121-193 107-169 (421)
32 PRK10426 alpha-glucosidase; Pr 30.3 3.5E+02 0.0076 27.0 9.2 36 141-180 273-308 (635)
33 PF04312 DUF460: Protein of un 30.1 1.2E+02 0.0025 24.3 4.7 52 22-86 37-88 (138)
34 TIGR00263 trpB tryptophan synt 29.7 1.3E+02 0.0029 27.8 5.9 39 146-193 93-131 (385)
35 PF06833 MdcE: Malonate decarb 29.0 1E+02 0.0022 26.8 4.5 49 26-82 64-113 (234)
36 cd01563 Thr-synth_1 Threonine 29.0 1.3E+02 0.0029 26.7 5.6 54 132-195 51-104 (324)
37 TIGR01552 phd_fam prevent-host 28.5 1.3E+02 0.0029 18.9 4.1 25 58-83 6-30 (52)
38 PF10281 Ish1: Putative stress 27.3 42 0.0009 20.2 1.4 13 140-152 7-19 (38)
39 KOG2794 Delta-aminolevulinic a 27.1 2.8E+02 0.0061 24.9 6.9 55 186-240 124-181 (340)
40 PRK04346 tryptophan synthase s 26.5 1.5E+02 0.0033 27.7 5.7 61 147-236 102-162 (397)
41 PRK13260 2,3-diketo-L-gulonate 26.2 75 0.0016 29.1 3.4 44 27-85 73-116 (332)
42 cd00008 53EXOc 5'-3' exonuclea 26.1 67 0.0014 27.7 3.0 43 141-191 89-131 (240)
43 cd06449 ACCD Aminocyclopropane 25.9 1.7E+02 0.0038 25.9 5.7 42 146-196 47-89 (307)
44 PRK12391 tryptophan synthase s 25.7 1.4E+02 0.003 28.3 5.2 66 143-237 118-183 (427)
45 PRK14045 1-aminocyclopropane-1 25.6 1.7E+02 0.0036 26.4 5.6 39 146-193 65-104 (329)
46 PF00490 ALAD: Delta-aminolevu 25.5 1.4E+02 0.0029 27.3 4.9 50 145-202 65-129 (324)
47 COG4108 PrfC Peptide chain rel 24.4 2.2E+02 0.0048 27.4 6.1 35 27-81 106-140 (528)
48 PLN02556 cysteine synthase/L-3 24.0 1.2E+02 0.0025 28.1 4.3 53 153-237 112-164 (368)
49 PF00291 PALP: Pyridoxal-phosp 23.8 1.8E+02 0.0039 25.3 5.4 61 142-235 47-107 (306)
50 TIGR03175 AllD ureidoglycolate 23.7 88 0.0019 28.8 3.4 45 27-86 73-117 (349)
51 TIGR01139 cysK cysteine syntha 23.1 1.7E+02 0.0037 25.7 5.1 53 132-193 34-89 (298)
52 cd00755 YgdL_like Family of ac 22.7 2.7E+02 0.0059 23.9 6.1 56 64-152 117-172 (231)
53 PLN00011 cysteine synthase 22.6 2.1E+02 0.0046 25.6 5.7 44 142-195 55-103 (323)
54 PRK08197 threonine synthase; V 22.6 2.1E+02 0.0045 26.5 5.7 62 121-193 97-159 (394)
55 smart00475 53EXOc 5'-3' exonuc 22.6 91 0.002 27.4 3.2 43 141-191 88-130 (259)
56 cd05710 SIS_1 A subgroup of th 21.8 1.1E+02 0.0025 22.9 3.3 21 62-82 62-82 (120)
57 KOG1250 Threonine/serine dehyd 21.7 1.5E+02 0.0032 28.1 4.4 81 99-197 201-281 (457)
58 PRK10717 cysteine synthase A; 21.6 1.7E+02 0.0037 26.2 4.9 54 132-194 41-97 (330)
59 PLN02618 tryptophan synthase, 21.5 1.8E+02 0.0039 27.4 5.1 61 147-236 115-175 (410)
60 KOG3125 Thymidine kinase [Nucl 21.4 4.1E+02 0.0088 22.8 6.6 92 62-164 43-144 (234)
61 PRK09482 flap endonuclease-lik 21.4 83 0.0018 27.7 2.6 50 141-198 88-140 (256)
62 PRK15025 ureidoglycolate dehyd 20.7 1.1E+02 0.0024 28.1 3.5 46 27-87 73-118 (349)
63 TIGR01138 cysM cysteine syntha 20.7 2.1E+02 0.0046 25.2 5.2 42 144-194 48-92 (290)
64 TIGR01137 cysta_beta cystathio 20.6 1.6E+02 0.0035 27.5 4.7 41 144-194 51-95 (454)
65 PRK13803 bifunctional phosphor 20.2 1.9E+02 0.0041 28.7 5.2 61 147-236 314-374 (610)
66 PRK13028 tryptophan synthase s 20.2 2.1E+02 0.0046 26.8 5.3 61 147-236 106-166 (402)
67 PRK07476 eutB threonine dehydr 20.1 1.5E+02 0.0032 26.6 4.1 44 142-194 57-100 (322)
68 PRK03910 D-cysteine desulfhydr 20.1 2.5E+02 0.0054 25.2 5.6 42 146-196 59-101 (331)
No 1
>PLN02743 nicotinamidase
Probab=100.00 E-value=8.3e-53 Score=364.21 Aligned_cols=238 Identities=71% Similarity=1.244 Sum_probs=207.2
Q ss_pred ChhhhHHHHHhhcCCCCcccccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEE
Q 025980 1 MVSQTIDILKNELPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAF 80 (245)
Q Consensus 1 ~~~~~~~~~~~~~p~~~~~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~ 80 (245)
|||.|.|.+|.++|....++....++++|||||||||+|++++.|.++.......+..+++++++|++.||++|+||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tALlVIDmQndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~ 80 (239)
T PLN02743 1 MVSDTVDLLKKELPVEQESLVLNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAF 80 (239)
T ss_pred ChHHHHHHHHHhCCCccccccccCCCCEEEEEEeCcCCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 89999999999999755455544447999999999999998754555433222345678999999999999999999999
Q ss_pred eccCCCCCCCCCCCCcccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeee
Q 025980 81 LDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVC 160 (245)
Q Consensus 81 ~d~h~~~~p~~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~ 160 (245)
+++|.++..+..||.||+.||+|++++++|.|.+++....++.|++||+|++|+.+.+++.|.++|+++||++|+|+|++
T Consensus 81 ~d~h~~~~~~~~~~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~ 160 (239)
T PLN02743 81 LDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGIC 160 (239)
T ss_pred eCccCCCccccCCCCccCCCCcccccchhhCCCCCCceEEEEecCccccccccccccCccHHHHHHHHCCCCEEEEEEeC
Confidence 99998777667799999999999999999998776543347789999999998655554448999999999999999999
Q ss_pred cCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccc
Q 025980 161 TDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLS 238 (245)
Q Consensus 161 Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~ 238 (245)
||+||+||.+|+|+|+++||.+|+++|+|++|||++++.+.|.+++++++..|+++.+|+.+|++|+.+||+|++...
T Consensus 161 T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 238 (239)
T PLN02743 161 TDICVLDFVASALSARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSKVS 238 (239)
T ss_pred cchhccChHHHHHHHHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHHHHHHHHHHHhCCcEeeeeec
Confidence 999998777999999999998777789999999999999999999999999999999999999999999999998764
No 2
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=2.2e-41 Score=288.46 Aligned_cols=185 Identities=26% Similarity=0.456 Sum_probs=156.4
Q ss_pred CceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCC---------------
Q 025980 26 VVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPE--------------- 90 (245)
Q Consensus 26 ~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~--------------- 90 (245)
|++|||||||||+|+.+ |.+++++ ...+++++++|++.||++|+||||++++|++++..
T Consensus 1 m~~ALlvID~Qndf~~~--g~l~~~~----~~~~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T PRK11609 1 MKRALLLVDLQNDFCAG--GALAVPE----GDSTIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGAEPGTQGEL 74 (212)
T ss_pred CCcEEEEEeCCccCCCC--CccccCC----HHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCCCCcccccc
Confidence 57999999999999953 5676553 34579999999999999999999999999765431
Q ss_pred -----CCCCCcccCCCCCCccccccccccCCCceEEEecC------cccccCCcccCCCcchHHHHHHhCCCCEEEEEee
Q 025980 91 -----DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKD------CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGV 159 (245)
Q Consensus 91 -----~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~------~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv 159 (245)
..||.||++||+|++|+++|.|.++ +.++.|+ +||+|+++... ..|+|+.+|+++||++|+|||+
T Consensus 75 ~~~~~~~~~~~~~~gt~g~el~~~l~~~~~---d~vi~K~~~~~~~~~SaF~~~~~~-~~T~L~~~L~~~gi~~lii~G~ 150 (212)
T PRK11609 75 DGLPQTWWPDHCVQNSEGAALHPLLNQKAI---DAVFHKGENPLIDSYSAFFDNGHR-QKTALDDWLREHGITELIVMGL 150 (212)
T ss_pred CCcccccCcccccCCCCcCccChhhcccCC---CEEEECCCCCCCcccccccCCCCC-CCccHHHHHHHcCCCEEEEEEe
Confidence 2489999999999999999998764 3688996 79999842100 0138999999999999999999
Q ss_pred ecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccch
Q 025980 160 CTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSF 239 (245)
Q Consensus 160 ~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~ 239 (245)
+||+||+ +|+++|+++|| +|+|++|||++++...+ .|+.+|..|...|++|++++++
T Consensus 151 ~T~~CV~---~Ta~dA~~~gy-----~v~v~~Da~a~~~~~~~---------------~~~~al~~~~~~~~~v~t~~~~ 207 (212)
T PRK11609 151 ATDYCVK---FTVLDALALGY-----QVNVITDGCRGVNLQPQ---------------DSAHAFMEMSAAGATLYTLADW 207 (212)
T ss_pred ccCHHHH---HHHHHHHHCCC-----EEEEEeeccCCCCCCch---------------hHHHHHHHHHHCCCEEEEHHHH
Confidence 9999999 99999999999 99999999999874322 3788999999999999999999
Q ss_pred hhhh
Q 025980 240 SEQT 243 (245)
Q Consensus 240 ~~~~ 243 (245)
+.++
T Consensus 208 ~~~~ 211 (212)
T PRK11609 208 EETQ 211 (212)
T ss_pred Hhhc
Confidence 8764
No 3
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=100.00 E-value=5.1e-40 Score=282.89 Aligned_cols=195 Identities=22% Similarity=0.280 Sum_probs=163.5
Q ss_pred cCCCCcccccCCCCceEEEEEeccccccCCCCCCCCCCCc-hhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCC-
Q 025980 13 LPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREP-NRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPE- 90 (245)
Q Consensus 13 ~p~~~~~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~-~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~- 90 (245)
+|.+...+.+++ +++|||||||||+|+.++ |.+...+. ......+++++++|++.||++|+||||+++.|.++..+
T Consensus 2 ~~~~~~~~~~~~-~~tALlvID~Qn~f~~~~-~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~~ 79 (226)
T TIGR03614 2 LPARPEPITLDP-EQTALIVVDMQNAYATPG-GYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYFQNGWDNDYVEA 79 (226)
T ss_pred CCCCCcccccCC-CCEEEEEEechhhhhCCC-cccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEEecccChhhhhc
Confidence 456666777887 799999999999999874 55532211 12346689999999999999999999999887654210
Q ss_pred ----C-C----------------CCCcccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhC
Q 025980 91 ----D-P----------------YPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNH 149 (245)
Q Consensus 91 ----~-~----------------~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~ 149 (245)
. . ++.+|.+|++|++++++|.|.+++ .+++|++||+|++| +|+.+||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~p~~~d---~vi~K~~~saF~~T-------~L~~~Lr~~ 149 (226)
T TIGR03614 80 GGPGSPNWHKSNALKTMRKRPELQGKLLAKGTWDYELVDELQPQPGD---IVLPKPRYSGFFNT-------PLDSMLRAR 149 (226)
T ss_pred cCCCcccccccccccccccCcccccceeecCCCCcccCcccCCCCCC---EEEeCCCcCCCCCC-------CHHHHHHHC
Confidence 0 0 124678999999999999997654 78999999999998 899999999
Q ss_pred CCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHC
Q 025980 150 QIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKER 229 (245)
Q Consensus 150 gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~ 229 (245)
||++|||+|+.||+||+ +|+++|+++|| +|+|++|||++.+.+ .+|+++|..|...
T Consensus 150 gI~~lvi~Gv~T~~CV~---sTar~A~~~Gy-----~v~vv~Da~a~~~~~----------------~~h~~~l~~l~~~ 205 (226)
T TIGR03614 150 GIRNLVFTGIATNVCVE---STLRDGFHLEY-----FGVVLEDATHQAGPD----------------FMQKAALYNIETF 205 (226)
T ss_pred CCCEEEEeccCccHhHH---HHHHHHHHCCC-----EEEEechhccCCCch----------------HHHHHHHHHHHhH
Confidence 99999999999999999 99999999999 999999999988753 3599999999999
Q ss_pred CcEEeeccchhhhh
Q 025980 230 GAKIANQLSFSEQT 243 (245)
Q Consensus 230 ~a~v~~s~~~~~~~ 243 (245)
++.|+++.++..+.
T Consensus 206 ~~~v~~~~~~~~~l 219 (226)
T TIGR03614 206 FGWVSDVADFCGTF 219 (226)
T ss_pred heeeecHHHHHHHH
Confidence 99999999988764
No 4
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=100.00 E-value=7e-39 Score=273.36 Aligned_cols=180 Identities=24% Similarity=0.379 Sum_probs=155.2
Q ss_pred CcccccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCC------
Q 025980 17 LESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPE------ 90 (245)
Q Consensus 17 ~~~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~------ 90 (245)
....++++ +++|||||||||+|+.+ |.+++++. ..++++++++++++ .+.+|||++++|++++..
T Consensus 3 ~~~~~~~~-~~~ALlVIDmQndF~~~--g~l~~~~~----~~iv~~i~~l~~~~--~~~~Vi~~~d~h~~~~~~~~~~~~ 73 (212)
T PTZ00331 3 TSCITVSS-TNDALIIVDVQNDFCKG--GSLAVPDA----EEVIPVINQVRQSH--HFDLVVATQDWHPPNHISFASNHG 73 (212)
T ss_pred ccccccCC-CCCEEEEEcCCCCCCCC--CccCCCCH----HHHHHHHHHHHHhc--CCCEEEEecCcCCCCCcChhhcCC
Confidence 34566777 69999999999999986 67877643 45789999999853 355799999999765431
Q ss_pred -----------CCCCCcccCCCCCCccccccccccCCCceEEEecC------ccccc-----CCcccCCCcchHHHHHHh
Q 025980 91 -----------DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKD------CFDGY-----FGSIEDDGSNVFVDWVKN 148 (245)
Q Consensus 91 -----------~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~------~~saF-----~~t~~~~~~~~L~~~L~~ 148 (245)
..||.||++||+|++|+|+|.|.++ +.++.|+ +||+| ++| +|+++|++
T Consensus 74 ~~~~~~~~~~~~~~~~h~~~gs~g~~i~~~L~~~~~---~~vi~K~~~~~~~~~saF~~~~~~~t-------~L~~~L~~ 143 (212)
T PTZ00331 74 KPKILPDGTTQGLWPPHCVQGTKGAQLHKDLVVERI---DIIIRKGTNRDVDSYSAFDNDKGSKT-------GLAQILKA 143 (212)
T ss_pred CCCcccCCCccCCCcccccCCCCcccCChhhccCCC---cEEEECCCCCCCceecCccCCCCCCc-------hHHHHHHH
Confidence 2699999999999999999998754 4788998 69999 776 89999999
Q ss_pred CCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHH
Q 025980 149 HQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKE 228 (245)
Q Consensus 149 ~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~ 228 (245)
+||++|+|||++||+||+ +|+++|.++|| +|+|++|||++++++ .|+.+|+.|+.
T Consensus 144 ~gi~~lvi~G~~t~~CV~---~Ta~~a~~~g~-----~v~vv~Da~~~~~~~-----------------~~~~al~~~~~ 198 (212)
T PTZ00331 144 HGVRRVFICGLAFDFCVL---FTALDAVKLGF-----KVVVLEDATRAVDPD-----------------AISKQRAELLE 198 (212)
T ss_pred CCCCEEEEEEeccCHHHH---HHHHHHHHCCC-----EEEEeCcCccCCCHH-----------------HHHHHHHHHHH
Confidence 999999999999999999 99999999999 999999999999865 37899999999
Q ss_pred CCcEEeeccchh
Q 025980 229 RGAKIANQLSFS 240 (245)
Q Consensus 229 ~~a~v~~s~~~~ 240 (245)
.|+.|+++.+++
T Consensus 199 ~g~~v~~~~~~~ 210 (212)
T PTZ00331 199 AGVILLTSSDLV 210 (212)
T ss_pred CCCEEEeHHHhh
Confidence 999999998875
No 5
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=100.00 E-value=5.9e-39 Score=270.65 Aligned_cols=171 Identities=29% Similarity=0.451 Sum_probs=146.0
Q ss_pred ceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCC-----------------
Q 025980 27 VTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKP----------------- 89 (245)
Q Consensus 27 ~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p----------------- 89 (245)
.+|||||||||+|+.+ |.+++++. ..++++|++|++++| |.||||++++|++++.
T Consensus 1 ~tALlvID~Qndf~~~--g~l~~~~~----~~~v~~i~~l~~~ar--g~~Vi~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 72 (196)
T cd01011 1 TDALLVVDVQNDFCPG--GALAVPGG----DAIVPLINALLSLFQ--YDLVVATQDWHPANHASFASNHPGQMPFITLPP 72 (196)
T ss_pred CceEEEEcCCCCCCCC--CcccCCCH----HHHHHHHHHHHHhcC--CCEEEEecCCCCCCCcChhhcCCCCCCccccCC
Confidence 3799999999999985 67776543 457999999999999 9999999999976542
Q ss_pred --CCCCCCcccCCCCCCccccccccccCCCceEEEecC------cccccCCcccCCCcchHHHHHHhCCCCEEEEEeeec
Q 025980 90 --EDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKD------CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCT 161 (245)
Q Consensus 90 --~~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~------~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~T 161 (245)
...||.||++||+|++++|+|.+.++ +.++.|+ +||+|++... .++++|.++|+++||++|+|||++|
T Consensus 73 ~~~~~~~~~~~~gs~g~~i~~~l~~~~~---d~vi~K~~~~~~~~~saF~~~~~-~~~t~L~~~L~~~~i~~lii~G~~t 148 (196)
T cd01011 73 GPQVLWPDHCVQGTPGAELHPGLPVPDI---DLIVRKGTNPDIDSYSAFFDNDR-RSSTGLAEYLRERGIDRVDVVGLAT 148 (196)
T ss_pred CCcCcCCCccCCCCCCCccCcccccCCC---CEEEECCCCCCCceeeeeecCCc-cCchhHHHHHHHCCCCEEEEEEecc
Confidence 12599999999999999999998654 4789994 6899998100 1112899999999999999999999
Q ss_pred CceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEe
Q 025980 162 DICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIA 234 (245)
Q Consensus 162 d~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~ 234 (245)
|+||. +|+++|+++|| +|+|++|||++++.+ .|+.+|..|+..|++|+
T Consensus 149 ~~CV~---~T~~~a~~~g~-----~v~v~~Da~~~~~~~-----------------~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 149 DYCVK---ATALDALKAGF-----EVRVLEDACRAVDPE-----------------TIERAIEEMKEAGVVLV 196 (196)
T ss_pred cHHHH---HHHHHHHHCCC-----EEEEeccccCCCCHH-----------------HHHHHHHHHHHccCEEC
Confidence 99999 99999999999 999999999999864 48999999999999875
No 6
>PRK11440 putative hydrolase; Provisional
Probab=100.00 E-value=7.5e-39 Score=268.07 Aligned_cols=177 Identities=20% Similarity=0.297 Sum_probs=151.4
Q ss_pred cCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCC-------CCCC
Q 025980 22 LPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPE-------DPYP 94 (245)
Q Consensus 22 l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~-------~~~~ 94 (245)
+++ +++|||||||||+|+.+. |... ....+++++++|+++||++|+||||+++.|.++.++ ...+
T Consensus 4 l~~-~~~ALlvID~Qn~f~~~~-~~~~------~~~~~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~ 75 (188)
T PRK11440 4 LNA-KTTALVVIDLQEGILPFA-GGPH------TADEVVARAARLAAKFRASGSPVVLVRVGWSADYAEALKQPVDAPSP 75 (188)
T ss_pred CCC-CCEEEEEEecccccccCC-CCcc------hHHHHHHHHHHHHHHHHHcCCcEEEEecccCCchhhhccCccccccc
Confidence 555 689999999999999742 2111 234689999999999999999999999877665432 1235
Q ss_pred CcccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHH
Q 025980 95 THCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMS 174 (245)
Q Consensus 95 ~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~ 174 (245)
.||+.|++ ++++++|.|.+++ .++.|++||+|++| +|+.+|+++||++|+|||++||+||. +|+++
T Consensus 76 ~~~~~~~~-~~~~~~l~~~~~d---~vi~K~~~saF~~T-------~L~~~L~~~gi~~lii~Gv~T~~CV~---~Ta~~ 141 (188)
T PRK11440 76 AKVLPENW-WQHPAALGKTDSD---IEVTKRQWGAFYGT-------DLELQLRRRGIDTIVLCGISTNIGVE---STARN 141 (188)
T ss_pred ccccCCcc-cccCcccCCCCCC---EEEecCCcCCCCCC-------CHHHHHHHCCCCEEEEeeechhHHHH---HHHHH
Confidence 67888877 7999999998754 68999999999998 99999999999999999999999999 99999
Q ss_pred HHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccchhhh
Q 025980 175 ARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQ 242 (245)
Q Consensus 175 A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~~~~ 242 (245)
|+++|| +|+|++|||++++.+ .|+.+|..+...++.|+++.+++..
T Consensus 142 A~~~gy-----~v~vv~Da~as~~~~-----------------~h~~al~~~~~~~a~v~~~~~~~~~ 187 (188)
T PRK11440 142 AWELGF-----NLVIAEDACSAASAE-----------------QHQNSMNHIFPRIARVRSVEEILNA 187 (188)
T ss_pred HHHCCC-----EEEEechhhcCCCHH-----------------HHHHHHHHHHhheeEEeeHHHHHhh
Confidence 999999 999999999998764 4899999998899999999998753
No 7
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=100.00 E-value=1.6e-38 Score=269.40 Aligned_cols=180 Identities=19% Similarity=0.209 Sum_probs=152.9
Q ss_pred CCcccccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCC-----C
Q 025980 16 ELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKP-----E 90 (245)
Q Consensus 16 ~~~~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p-----~ 90 (245)
...+|.+++ +++|||||||||+|+.+. + ... .....+++++++|++.||++|+||||+++.|..... .
T Consensus 19 ~~~~~~l~~-~~tALlvID~Q~~f~~~~-~-~~~----~~~~~~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~~~~~~ 91 (203)
T cd01013 19 NKVDWQIDP-KRAVLLVHDMQRYFLDFY-D-ESA----EPVPQLIANIARLRDWCRQAGIPVVYTAQPGNQTPEQRALLN 91 (203)
T ss_pred CCCCCCCCC-CcEEEEEEeChhhhhCcc-c-ccc----chHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCChhHHHHHH
Confidence 355677887 699999999999999752 1 111 124568999999999999999999999876542211 1
Q ss_pred CCCCCcccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchh
Q 025980 91 DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVC 170 (245)
Q Consensus 91 ~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~ 170 (245)
..|+.++..|++|++++++|.|.+++ .+++|++||+|++| +|+.+||++||++|+|+|++||+||+ +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~d---~vi~K~~~saF~~T-------~L~~~Lr~~gi~~lii~Gv~T~~CV~---~ 158 (203)
T cd01013 92 DFWGPGLTASPEETKIVTELAPQPDD---TVLTKWRYSAFKRS-------PLLERLKESGRDQLIITGVYAHIGCL---S 158 (203)
T ss_pred HHhhccCCCCCCccccccccCCCCCC---EEEeCCCcCCcCCC-------CHHHHHHHcCCCEEEEEEeccChhHH---H
Confidence 25777777889999999999987654 78999999999998 99999999999999999999999999 9
Q ss_pred hHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeecc
Q 025980 171 STMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQL 237 (245)
Q Consensus 171 Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~ 237 (245)
||++|+++|| +|+|++|||++++.+ .|+.+|..|...|+.|++++
T Consensus 159 Ta~~A~~~Gy-----~v~vv~Da~as~~~~-----------------~h~~al~~l~~~~a~v~~t~ 203 (203)
T cd01013 159 TAVDAFMRDI-----QPFVVADAIADFSLE-----------------EHRMALKYAATRCAMVVSTD 203 (203)
T ss_pred HHHHHHHCCC-----eEEEeccccCCCCHH-----------------HHHHHHHHHHhheeEeeecC
Confidence 9999999999 999999999998854 48999999999999999874
No 8
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=100.00 E-value=1.3e-38 Score=264.68 Aligned_cols=171 Identities=17% Similarity=0.316 Sum_probs=148.9
Q ss_pred EEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCC-CCC----C--CcccCCC
Q 025980 29 GLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPE-DPY----P--THCIAGT 101 (245)
Q Consensus 29 ALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~-~~~----~--~h~~~gt 101 (245)
|||||||||+|+.+ |.+..+ ....+++|++++++.||.+|+||||++++|.++.++ ..| | .+|..|+
T Consensus 1 ALlvID~Q~~f~~~--~~~~~~----~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 74 (179)
T cd01015 1 ALLVIDLVEGYTQP--GSYLAP----GIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVPAMSDLVEGS 74 (179)
T ss_pred CEEEEEeecceeCC--CCcccc----chHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhcccccccccCCC
Confidence 69999999999986 345433 235689999999999999999999999888665433 123 2 3477899
Q ss_pred CCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCC
Q 025980 102 HESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFL 181 (245)
Q Consensus 102 ~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~ 181 (245)
+|++++++|.|.++ +.+++|++||+|++| +|+.+|+++||++|+|+|++||+||+ +|+++|+++||
T Consensus 75 ~~~~~~~~l~~~~~---~~v~~K~~~saF~~t-------~L~~~L~~~gi~~vvi~G~~t~~CV~---~Ta~~A~~~Gy- 140 (179)
T cd01015 75 PLAAICDELAPQED---EMVLVKKYASAFFGT-------SLAATLTARGVDTLIVAGCSTSGCIR---ATAVDAMQHGF- 140 (179)
T ss_pred CccccccccCCCCC---CEEEecCccCCccCC-------cHHHHHHHcCCCEEEEeeecccHhHH---HHHHHHHHCCC-
Confidence 99999999999765 478999999999998 99999999999999999999999999 99999999999
Q ss_pred CCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccchh
Q 025980 182 RPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFS 240 (245)
Q Consensus 182 ~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~~ 240 (245)
+|+|++|||++++.+ .|+.+|..|...|+.|++|.+++
T Consensus 141 ----~v~vv~Da~a~~~~~-----------------~h~~al~~l~~~~~~v~~t~~~~ 178 (179)
T cd01015 141 ----RPIVVRECVGDRAPA-----------------PHEANLFDIDNKYGDVVSTDDAL 178 (179)
T ss_pred ----eEEEeeccccCCCHH-----------------HHHHHHHHHHhhceeeccHHHHh
Confidence 999999999998754 48999999999999999998875
No 9
>PLN02621 nicotinamidase
Probab=100.00 E-value=1.2e-37 Score=262.95 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=151.1
Q ss_pred ccccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCC----CCCC
Q 025980 19 SVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPE----DPYP 94 (245)
Q Consensus 19 ~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~----~~~~ 94 (245)
...+++ +++|||||||||+|+.. ...+++++++|++.+|.+|+||||++++|.+..+. ..|+
T Consensus 13 ~~~~~~-~~~aLlvID~Q~~f~~~-------------~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~~~~~~~~~~~ 78 (197)
T PLN02621 13 KRDPDP-KQAALLVIDMQNYFSSM-------------AEPILPALLTTIDLCRRASIPVFFTRHSHKSPSDYGMLGEWWD 78 (197)
T ss_pred cCCCCC-CCEEEEEEeChhhhhhh-------------HHHHHHHHHHHHHHHHHCCCcEEEEeccCCCcchhhhhhhhcC
Confidence 345666 68999999999999641 13468999999999999999999999988543211 2366
Q ss_pred Cc-ccCCCCCCcccccccc-ccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhH
Q 025980 95 TH-CIAGTHESNLVPALQW-IEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCST 172 (245)
Q Consensus 95 ~h-~~~gt~g~ei~~~L~~-~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta 172 (245)
.| |+.|++|++++++|.| .++ +.++.|++||+|++| +|+.+|+++|+++|+|+|++||+||+ +|+
T Consensus 79 ~~~~~~gs~g~~i~~~L~~~~~~---~~vi~K~~~saf~~t-------~L~~~L~~~gi~~lvi~Gv~T~~CV~---~Ta 145 (197)
T PLN02621 79 GDLILDGTTEAELMPEIGRVTGP---DEVVEKSTYSAFYNT-------RLEERLRKIGVKEVIVTGVMTNLCCE---TTA 145 (197)
T ss_pred CccccCCCCccccchhccCCCCC---CEEEECCCcCCCCCC-------cHHHHHHHCCCCEEEEEecccchhHH---HHH
Confidence 66 8999999999999998 443 468999999999998 99999999999999999999999999 999
Q ss_pred HHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccchhh
Q 025980 173 MSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSE 241 (245)
Q Consensus 173 ~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~~~ 241 (245)
++|+++|| +|+|++|||++++.+ .|+.+|..|+..|+.|+++.+++.
T Consensus 146 ~~a~~~gy-----~v~v~~Da~as~~~~-----------------~h~~al~~~~~~~~~v~~~~~~~~ 192 (197)
T PLN02621 146 REAFVRGF-----RVFFSTDATATANEE-----------------LHEATLKNLAYGFAYLVDCDRLEA 192 (197)
T ss_pred HHHHHCCC-----EEEEeccccCCCCHH-----------------HHHHHHHHHHhhceEeecHHHHHH
Confidence 99999999 999999999999764 489999999999999999998876
No 10
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=100.00 E-value=8.2e-38 Score=257.31 Aligned_cols=169 Identities=30% Similarity=0.569 Sum_probs=146.4
Q ss_pred eEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCC-----CCCCCcccCCCC
Q 025980 28 TGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPE-----DPYPTHCIAGTH 102 (245)
Q Consensus 28 tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~-----~~~~~h~~~gt~ 102 (245)
||||||||||+|+. +.+..+ ....+++++++|++++|++|+||||+++.|...... ..|+.+|..|++
T Consensus 1 TaLlvID~Q~~f~~---~~~~~~----~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 73 (174)
T PF00857_consen 1 TALLVIDMQNDFIN---GSLAPP----NAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPHCIPGSP 73 (174)
T ss_dssp EEEEEES-BHHHHT---STTTST----THHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSCSBTTSG
T ss_pred CEEEEEeChhhhhc---CCcccc----CHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccccccccccccccccCCCC
Confidence 79999999999992 344433 345689999999999999999999999988722221 346789999999
Q ss_pred CCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCC
Q 025980 103 ESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLR 182 (245)
Q Consensus 103 g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~ 182 (245)
|++++++|.|.++ +.+|.|+++|+|++| +|.++|+++|+++|+|+|++|++||. +|+++|+++||
T Consensus 74 ~~~l~~~l~~~~~---~~vi~K~~~saf~~t-------~L~~~L~~~gi~~vil~G~~t~~CV~---~Ta~~a~~~g~-- 138 (174)
T PF00857_consen 74 GAELVPELAPQPG---DPVIEKNRYSAFFGT-------DLDEILRKRGIDTVILCGVATDVCVL---ATARDAFDRGY-- 138 (174)
T ss_dssp GGSBHGGGHCHTT---SEEEEESSSSTTTTS-------SHHHHHHHTTESEEEEEEESTTTHHH---HHHHHHHHTT---
T ss_pred ccceeeEeecccc---cceEEeecccccccc-------cccccccccccceEEEcccccCcEEe---hhHHHHHHCCC--
Confidence 9999999999874 478999999999998 99999999999999999999999999 99999999999
Q ss_pred CCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccc
Q 025980 183 PLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLS 238 (245)
Q Consensus 183 ~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~ 238 (245)
+|+|++|||++++++ .|+.+|..|...|+.|+++++
T Consensus 139 ---~v~v~~Da~~~~~~~-----------------~h~~~l~~l~~~~~~v~t~~~ 174 (174)
T PF00857_consen 139 ---RVIVVEDACASYSPE-----------------AHEAALEELRKRGAEVITSAE 174 (174)
T ss_dssp ---EEEEEEEEEEBSSHH-----------------HHHHHHHHHHHHTSEEE-HHH
T ss_pred ---EEEEEChhhcCCCHH-----------------HHHHHHHHHHhCCCEEEeCCC
Confidence 999999999999864 389999999999999999864
No 11
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-37 Score=261.60 Aligned_cols=180 Identities=26% Similarity=0.340 Sum_probs=146.4
Q ss_pred CceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCCC----------CCCC
Q 025980 26 VVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPED----------PYPT 95 (245)
Q Consensus 26 ~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~~----------~~~~ 95 (245)
+++|||||||||+|+.+. |.+...+... ..+++++++|++.+|..|.||||++++|++++... .||.
T Consensus 4 ~~~ALivID~Q~~f~~~~-~~~~~~~~~~--~~i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (205)
T COG1335 4 AKTALIVVDMQNDFMPGG-GSLAALGVDG--RKIIPNIAALVDAARAAGQPVIATQDWHPADISSLAGSPESSKLFPWPR 80 (205)
T ss_pred cceEEEEEeeeccccCCC-CcccccCCch--hhhHHHHHHHHHHHHHcCCeEEEecccCCCcccccccccccccCCCCcc
Confidence 689999999999999974 4444332211 35799999999999999999999999998864321 1889
Q ss_pred cccCCCCCCccccccccccCC---CceEEEecC-cccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhh
Q 025980 96 HCIAGTHESNLVPALQWIEKE---PNVTIRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCS 171 (245)
Q Consensus 96 h~~~gt~g~ei~~~L~~~~~~---~~~~vi~K~-~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~T 171 (245)
||++|++|++++++|.|..+. ....++.|. +||+|++| +|+.+||++||++|++||++||+||+ +|
T Consensus 81 h~~~g~~g~~~~~~l~~~~~~~~~~~~~~~~k~~~~saF~~T-------~L~~~Lr~~~i~~l~v~G~~td~CV~---~T 150 (205)
T COG1335 81 HDVKGTPGAELLGELPPAVDDAQLVPEDVIFKKHGYSAFAGT-------DLDDILRNLGIDTVVVCGIATDICVL---AT 150 (205)
T ss_pred hhcCCCcchhhccccccccccccccceeeeccccccCcccCC-------CHHHHHHHCCCCEEEEeeeehhHHHH---HH
Confidence 999999999999999987541 013567777 99999998 99999999999999999999999999 99
Q ss_pred HHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHH-CCcEEeeccch
Q 025980 172 TMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKE-RGAKIANQLSF 239 (245)
Q Consensus 172 a~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~-~~a~v~~s~~~ 239 (245)
+++|+++|| +|+|++|||++++.+.+ |..++..+.. .++.+..+.++
T Consensus 151 ~~~A~~~gy-----~v~v~~da~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1335 151 ARDAFDLGY-----QVTLVEDATAGSSLDRS----------------GEAAARLEKHHIFGAVLDTEEA 198 (205)
T ss_pred HHHHHHCCC-----eEEEehhhcccCCCChH----------------HHHHHHHHHhhhhcceeehHHH
Confidence 999999999 99999999999997643 5566655555 35555554443
No 12
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=100.00 E-value=2.6e-34 Score=233.80 Aligned_cols=149 Identities=33% Similarity=0.562 Sum_probs=131.0
Q ss_pred EEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCCC---CCCCcccCCCCCCc
Q 025980 29 GLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPED---PYPTHCIAGTHESN 105 (245)
Q Consensus 29 ALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~~---~~~~h~~~gt~g~e 105 (245)
|||||||||+|+.+. +..+ + ....++++++++++++|..|+||||+++.+.++.++. .|+.||..|++|++
T Consensus 1 aLliID~Q~~f~~~~-~~~~-~----~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 74 (161)
T cd00431 1 ALLVVDMQNDFVPGG-GLLL-P----GADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAELLWPPHCVKGTEGAE 74 (161)
T ss_pred CEEEEECcccCcCCC-CCcC-c----cHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccccCcccccCCCchhh
Confidence 699999999999863 2221 1 2456899999999999999999999998776655432 58899999999999
Q ss_pred cccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCc
Q 025980 106 LVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLE 185 (245)
Q Consensus 106 i~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~ 185 (245)
++++|.+.++ +.++.|+++|+|++| +|.++|+++|+++|+|+|++|++||+ +|+++|+++||
T Consensus 75 ~~~~l~~~~~---~~~i~K~~~saf~~t-------~l~~~L~~~~i~~vil~G~~t~~CV~---~T~~~a~~~G~----- 136 (161)
T cd00431 75 LVPELAPLPD---DLVIEKTRYSAFYGT-------DLDELLRERGIDTLVVCGIATDICVL---ATARDALDLGY----- 136 (161)
T ss_pred cchhhCCCCC---CEEEecCCcCCccCC-------CHHHHHHHCCCCEEEEEecCcChhHH---HHHHHHHHCCC-----
Confidence 9999987764 468999999999998 89999999999999999999999999 99999999999
Q ss_pred eEEEecCcccccCccc
Q 025980 186 EVVVYSAACATFDIPT 201 (245)
Q Consensus 186 ~V~Vv~Da~as~~~~~ 201 (245)
+|+|++|||++++.+.
T Consensus 137 ~v~vi~Da~~s~~~~~ 152 (161)
T cd00431 137 RVIVVEDACATRDEED 152 (161)
T ss_pred EEEEehhhcccCChHH
Confidence 9999999999999754
No 13
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=100.00 E-value=1.6e-33 Score=229.06 Aligned_cols=153 Identities=27% Similarity=0.483 Sum_probs=129.4
Q ss_pred EEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCCCCCCCcccCCCCCCcccc
Q 025980 29 GLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVP 108 (245)
Q Consensus 29 ALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~~~~~~h~~~gt~g~ei~~ 108 (245)
|||||||||+|+.+. .... ....+++++++|++++|++|+||||+++.|.++.+ +.+|++|++++|
T Consensus 1 aLlviD~Q~~f~~~~---~~~~----~~~~~v~~i~~li~~~r~~~~~Vi~~~~~~~~~~~-------~~~gt~g~~l~~ 66 (155)
T cd01014 1 ALLVIDVQNGYFDGG---LPPL----NNEAALENIAALIAAARAAGIPVIHVRHIDDEGGS-------FAPGSEGWEIHP 66 (155)
T ss_pred CEEEEeCchhhhCCC---CCcC----CHHHHHHHHHHHHHHHHHCCCeEEEEEeccCCCCC-------CCCCCCccccch
Confidence 699999999999752 2222 23568999999999999999999999877654322 457999999999
Q ss_pred ccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEE
Q 025980 109 ALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVV 188 (245)
Q Consensus 109 ~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~ 188 (245)
+|.+.++ +.+++|+++|+|++| +|.++|+++|+++|+|+|++||+||. +|+++|+++|| +|+
T Consensus 67 ~l~~~~~---d~v~~K~~~saf~~t-------~l~~~L~~~gi~~viv~G~~td~CV~---~Ta~~a~~~g~-----~v~ 128 (155)
T cd01014 67 ELAPLEG---ETVIEKTVPNAFYGT-------DLEEWLREAGIDHLVICGAMTEMCVD---TTVRSAFDLGY-----DVT 128 (155)
T ss_pred hhcCCCC---CEEEeCCCCCCcCCC-------CHHHHHHHCCCCEEEEEeeccchhHH---HHHHHHHHCCC-----cEE
Confidence 9988654 468999999999998 99999999999999999999999999 99999999999 999
Q ss_pred EecCcccccCcccchhhccccccCCChHHHHH
Q 025980 189 VYSAACATFDIPTHVATHTKGALAHPQEFMHH 220 (245)
Q Consensus 189 Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~ 220 (245)
|++|||++++.+.|+ ....+++.|.
T Consensus 129 vi~Da~~s~~~~~~~-------~~~~~~~~~~ 153 (155)
T cd01014 129 VVADACATFDLPDHG-------GVLSAEEIHA 153 (155)
T ss_pred EecccccCCCcccCC-------ceeCHHHHHh
Confidence 999999999988763 2344565553
No 14
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=100.00 E-value=8.1e-34 Score=231.25 Aligned_cols=152 Identities=24% Similarity=0.368 Sum_probs=132.0
Q ss_pred EEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCCCCCCCcccCCCCCCcccc
Q 025980 29 GLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVP 108 (245)
Q Consensus 29 ALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~~~~~~h~~~gt~g~ei~~ 108 (245)
|||||||||+|+.. .. . ...+++++++|+++||++|+||||++ |.+. +..+++|
T Consensus 1 aLlvID~Q~~f~~~----~~--~----~~~~~~~i~~l~~~ar~~g~pVi~~~--~~~~--------------~~g~~~~ 54 (157)
T cd01012 1 ALLLVDVQEKLAPA----IK--S----FDELINNTVKLAKAAKLLDVPVILTE--QYPK--------------GLGPTVP 54 (157)
T ss_pred CEEEEeCcHHHHHh----hc--C----HHHHHHHHHHHHHHHHhcCCCEEEEe--eCCC--------------CCCCchH
Confidence 69999999999863 11 1 35679999999999999999999995 3221 1227899
Q ss_pred cccc-ccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceE
Q 025980 109 ALQW-IEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEV 187 (245)
Q Consensus 109 ~L~~-~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V 187 (245)
+|.| .+++ .+++|++||+|++| +|+.+|++.|+++|+|+|++||+||. +|+++|+++|| +|
T Consensus 55 ~l~~~~~~~---~vi~K~~~saf~~t-------~L~~~L~~~gi~~lii~G~~T~~CV~---~Ta~~a~~~g~-----~v 116 (157)
T cd01012 55 ELREVFPDA---PVIEKTSFSCWEDE-------AFRKALKATGRKQVVLAGLETHVCVL---QTALDLLEEGY-----EV 116 (157)
T ss_pred HHHhhCCCC---CceecccccCcCCH-------HHHHHHHhcCCCEEEEEEeeccHHHH---HHHHHHHHCCC-----EE
Confidence 9988 5543 68999999999998 99999999999999999999999999 99999999999 99
Q ss_pred EEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccchhh
Q 025980 188 VVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSE 241 (245)
Q Consensus 188 ~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~~~ 241 (245)
+|++|||++++++ .|+.+|..|+..|++|+++.+++.
T Consensus 117 ~v~~Da~as~~~~-----------------~h~~al~~~~~~~~~v~~~~~~~~ 153 (157)
T cd01012 117 FVVADACGSRSKE-----------------DHELALARMRQAGAVLTTSESVLF 153 (157)
T ss_pred EEEeeCCCCCCHH-----------------HHHHHHHHHHHCCCEEeeHHHHHH
Confidence 9999999999864 389999999999999999888765
No 15
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.4e-30 Score=211.19 Aligned_cols=186 Identities=19% Similarity=0.201 Sum_probs=157.5
Q ss_pred cCCCCcccccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCC-CCCC-
Q 025980 13 LPLELESVVLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHP-NKPE- 90 (245)
Q Consensus 13 ~p~~~~~~~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~-~~p~- 90 (245)
+|.+..+|.++| .+.+|||+||||.|+++- ++-+ +.+..+|.||.+|-..|.++|+||+||. |+. ..|+
T Consensus 17 ~p~nk~~w~~~p-~RavLLIhDMQ~YFv~~~-~~~~-----~~~~~li~Ni~~Lr~~~~~~giPVvyTa--qp~~qs~~d 87 (218)
T COG1535 17 LPQNKVDWRFEP-KRAVLLIHDMQNYFVSPW-GENC-----PLMEQLIANIAKLRIWCKQAGIPVVYTA--QPGEQSPED 87 (218)
T ss_pred CcccccccccCc-ccceeeeehhHHhhcCCC-CCCC-----ccHHHHHHHHHHHHHHHHHcCCcEEEEe--cCCcCCHHH
Confidence 666667789998 699999999999999863 2111 1356789999999999999999999994 444 2332
Q ss_pred -----CCCCCcccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCcee
Q 025980 91 -----DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICV 165 (245)
Q Consensus 91 -----~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV 165 (245)
.-|.+..-.+.....++++|.|..+ +.++.|.+||||+.+ +|.+.||+.|+++|||+|+.+++|+
T Consensus 88 raLL~d~WGpgl~~~p~~~~vv~~l~P~~~---D~vL~kwrYsAF~~s-------~Llq~lr~~grdQLIItGVyaHigc 157 (218)
T COG1535 88 RALLKDFWGPGLTASPEQQKVVDELAPGAD---DTVLTKWRYSAFHRS-------PLLQMLREKGRDQLIITGVYAHIGC 157 (218)
T ss_pred HHHHHHhcCCCCCCChhhhhhHHhcCCCCC---ceEEeeeehhhhhcC-------hHHHHHHHcCCCcEEEeehhhhhhh
Confidence 2477665556666778899998764 578999999999998 9999999999999999999999999
Q ss_pred ccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccchhhh
Q 025980 166 LDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQ 242 (245)
Q Consensus 166 ~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~~~~ 242 (245)
+ .||++|+.+++ ++.+|.||++.++.+. |..+|..++.+.+.|+.|++++..
T Consensus 158 l---~TA~dAFm~di-----qpfmV~DAlaDfs~~~-----------------H~msLky~A~r~a~vv~Teell~~ 209 (218)
T COG1535 158 L---TTATDAFMRDI-----QPFMVADALADFSEEE-----------------HRMSLKYVAGRCARVVMTEELLCA 209 (218)
T ss_pred h---hhHHHHHHhcC-----cceeehhhhhhccHHH-----------------HHHHHHHHhcceeEEeeHHHHhhc
Confidence 9 99999999999 9999999999998753 899999999999999999998864
No 16
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=99.94 E-value=3.9e-27 Score=190.84 Aligned_cols=157 Identities=22% Similarity=0.367 Sum_probs=122.5
Q ss_pred eEEEEEeccccccCCCCCCCCCC-CchhHHHhHHHHHHHHHHHHhhCCC-cEEEEeccCCCCCC----------------
Q 025980 28 TGLVLVDIINGFCTVGAGNLAPR-EPNRQISGMINESARLARAFCDRRL-PVMAFLDTHHPNKP---------------- 89 (245)
Q Consensus 28 tALlVID~Qn~f~~~~~g~l~~~-~~~~~~~~iv~~i~~li~~~r~~g~-pVi~~~d~h~~~~p---------------- 89 (245)
.+|+||||||||+++ .|++... +++ . .|..+..|+... ...+ .||+|.|||+.++-
T Consensus 2 ~~l~vvd~qndfi~~-~~~~~s~~E~~---~-~i~Pi~~lLq~~-d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t 75 (223)
T KOG4003|consen 2 KTLIVVDMQNDFISP-LGSLTSVPEGE---E-LINPISDLLQDA-DRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYT 75 (223)
T ss_pred ceEEEEecccccccc-ccccccCCCch---h-hhccHHHHHHhc-ccccceEEEecccCcccceehhhhccCCCCCCCCc
Confidence 689999999999997 3556432 222 2 244444554432 2233 59999999987641
Q ss_pred ----C---------CCCCCcccCCCCCCccccccccccCCCceEEEecC------cccccCCcccCCCcchHHHHHHhCC
Q 025980 90 ----E---------DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKD------CFDGYFGSIEDDGSNVFVDWVKNHQ 150 (245)
Q Consensus 90 ----~---------~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~------~~saF~~t~~~~~~~~L~~~L~~~g 150 (245)
+ ..||.||+++|||.++++++-.... ..+|.|+ +||+|+...+. ..|+|..+|++++
T Consensus 76 ~~~~~~~d~V~~~~vl~p~HCv~ntwG~d~~~~~~~~~~---~~~I~KG~D~~~eSYSaF~D~~GR-~kt~L~~~L~k~~ 151 (223)
T KOG4003|consen 76 YHSPRPGDDVTQEGILWPVHCVKNTWGVDQIMDQVVTKH---IKIIDKGFDTDRESYSAFHDIWGR-HKTDLNKYLEKHH 151 (223)
T ss_pred ccCCCcCCchheeeecchhhhhccCCCCCcchhhhhhhh---eeecccCcchhHHHHHHHhhhccc-chhhHHHHHHHcC
Confidence 0 1479999999999999999876432 3688887 49999875321 1468999999999
Q ss_pred CCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccc
Q 025980 151 IRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 202 (245)
Q Consensus 151 i~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h 202 (245)
|+.++|+|+++|+||. .||++|...|| +.+|+..|+++.+.+.+
T Consensus 152 Id~V~IAGvA~DICVk---~TaL~A~~~~y-----~t~vI~E~~~Gsst~si 195 (223)
T KOG4003|consen 152 IDEVYIAGVALDICVK---ATALSAAELGY-----KTTVILEYTRGSSTPSI 195 (223)
T ss_pred CCeEEEeehhhHHHHH---HHHhhHHHhCc-----ceeeehhhhccCCCccc
Confidence 9999999999999999 99999999999 99999999999998876
No 17
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=139.51 Aligned_cols=159 Identities=22% Similarity=0.281 Sum_probs=125.7
Q ss_pred ccCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCCCCCCCCCCcccCC
Q 025980 21 VLPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAG 100 (245)
Q Consensus 21 ~l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~~p~~~~~~h~~~g 100 (245)
.+.| .++++++.|||..|... ++ ...++|.+..+|++++|-.++|+|.| .|+|. +
T Consensus 10 rl~P-~~t~fflCDmQEKFrpa----i~------yf~~iIs~~~rLl~aaril~vP~ivT--EqYP~---g--------- 64 (201)
T KOG4044|consen 10 RLNP-SSTVFFLCDMQEKFRPA----IP------YFPSIISVTTRLLAAARILQVPVIVT--EQYPE---G--------- 64 (201)
T ss_pred ecCC-CceEEEEechHhhhccc----ch------hhHHHHHHHHHHHHhhhhhCCcEEee--ccccc---c---------
Confidence 3566 69999999999999763 32 24568999999999999999999999 44332 1
Q ss_pred CCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHh-CCCCEEEEEeeecCceeccchhhHHHHHHcC
Q 025980 101 THESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKN-HQIRKLVVVGVCTDICVLDFVCSTMSARNRG 179 (245)
Q Consensus 101 t~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~-~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~G 179 (245)
-| ..+++|.-..- -..+.|+.||.+.. ...+-|++ .|.++++++|+.|++||+ .|+.|..++|
T Consensus 65 -LG-~TV~eLd~~g~---~~~~~KT~FSM~~p--------~v~~s~~~i~~~k~VvL~GiEthvCv~---qTa~dLl~rg 128 (201)
T KOG4044|consen 65 -LG-KTVPELDIEGL---KLNLSKTKFSMVLP--------PVEDSLKDIFGGKTVVLFGIETHVCVL---QTALDLLERG 128 (201)
T ss_pred -cc-ccchhhchhhh---cccccccceeeeCc--------hHHHHHHhccCCCeEEEEecchheehH---HHHHHHHhCC
Confidence 22 23555543211 13589999999976 46666666 678899999999999999 7999999999
Q ss_pred CCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcEEeeccchhhh
Q 025980 180 FLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQ 242 (245)
Q Consensus 180 y~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~v~~s~~~~~~ 242 (245)
. +|+|+.|||+|+.... ...|+..|+..|+.+.+|+..+..
T Consensus 129 l-----~VhvVaDacSSRs~~D-----------------R~~Al~r~rq~G~~lstsEsvI~~ 169 (201)
T KOG4044|consen 129 L-----NVHVVADACSSRSNQD-----------------RDLALERMRQAGANLSTSESVILN 169 (201)
T ss_pred c-----eEEEEeehhccccchh-----------------HHHHHHHHHhcCCcccchHHHHHH
Confidence 9 9999999999987643 577889999999999999877653
No 18
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=56.09 E-value=10 Score=31.04 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=37.9
Q ss_pred hHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEec
Q 025980 141 VFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYS 191 (245)
Q Consensus 141 ~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~ 191 (245)
.+.++|...|+..+..-|.+.|=|+. +-++.+.+.|+ +|+|++
T Consensus 90 ~i~~~l~~~gi~~~~~~g~EADDvIa---tla~~~~~~~~-----~v~IvS 132 (169)
T PF02739_consen 90 YIKELLEALGIPVLEVPGYEADDVIA---TLAKKASEEGF-----EVIIVS 132 (169)
T ss_dssp HHHHHHHHTTSEEEEETTB-HHHHHH---HHHHHHHHTTC-----EEEEE-
T ss_pred HHHHHHHHCCCCEecCCCCcHHHHHH---HHHhhhccCCC-----EEEEEc
Confidence 47788888999999999999999999 88999999999 999986
No 19
>PRK08329 threonine synthase; Validated
Probab=46.76 E-value=38 Score=30.87 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=39.0
Q ss_pred EEecCc-ccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecC
Q 025980 121 IRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSA 192 (245)
Q Consensus 121 vi~K~~-~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~D 192 (245)
++-|.. .+.. +++++++...+...+++.|.++|+... ..|.+.. .|.-|...|+ +++|+-.
T Consensus 74 l~~K~E~~nPt-GSfKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~a----lA~~aa~~G~-----~~~v~vp 135 (347)
T PRK08329 74 VYFKLDYLQPT-GSFKDRGTYVTVAKLKEEGINEVVIDS-SGNAALS----LALYSLSEGI-----KVHVFVS 135 (347)
T ss_pred EEEEeCCCCCC-cCCHHHHHHHHHHHHHHcCCCEEEEEC-CCcHHHH----HHHHHHHcCC-----cEEEEEC
Confidence 444543 3443 444444443445556678999888876 7787775 6777778999 7777754
No 20
>PRK06381 threonine synthase; Validated
Probab=45.83 E-value=44 Score=29.87 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=34.9
Q ss_pred CcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 132 GSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 132 ~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
+++++++...+...+++.|.++|+ ++-..|.+.. .|.-|...|| +++|+-...
T Consensus 44 GS~K~R~a~~~l~~a~~~g~~~lv-~aSsGN~g~a----lA~~aa~~G~-----~~~ivvp~~ 96 (319)
T PRK06381 44 GTQKDRIAEAHVRRAMRLGYSGIT-VGTCGNYGAS----IAYFARLYGL-----KAVIFIPRS 96 (319)
T ss_pred cCcHHHHHHHHHHHHHHcCCCEEE-EeCCcHHHHH----HHHHHHHcCC-----cEEEEECCC
Confidence 444333333344455668887765 5667788875 7888888999 888877654
No 21
>COG3356 Predicted membrane protein [Function unknown]
Probab=42.32 E-value=1.3e+02 Score=29.71 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=19.1
Q ss_pred chHHHHHH----hCCCCEEEEEeeecCceec
Q 025980 140 NVFVDWVK----NHQIRKLVVVGVCTDICVL 166 (245)
Q Consensus 140 ~~L~~~L~----~~gi~~lii~Gv~Td~CV~ 166 (245)
++|.+.++ +. +++++|+=-.||.|--
T Consensus 458 ~~L~~~v~~~v~~l-v~~veV~TTDtH~vn~ 487 (578)
T COG3356 458 TELREEVRKAVRDL-VSEVEVVTTDTHYVNG 487 (578)
T ss_pred HHHHHHHHHHHHhh-hcEEEEEecCCceecc
Confidence 35555544 45 9999999999998874
No 22
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=39.45 E-value=77 Score=28.64 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHhCCCCEEEEEe-eecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 146 VKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 146 L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
.+++|+.+|+-+| ...|.|.. +|.-|..+|+ +++|+.+..
T Consensus 61 a~~~G~~~vvs~ggs~gN~g~a----lA~~a~~~Gl-----~~~iv~~~~ 101 (337)
T TIGR01274 61 AQAQGCTTLVSIGGIQSNQTRQ----VAAVAAHLGM-----KCVLVQENW 101 (337)
T ss_pred HHHcCCCEEEECCCCcchHHHH----HHHHHHHcCC-----cEEEEeccC
Confidence 4568999888765 55788875 8889999999 888776543
No 23
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=39.19 E-value=76 Score=29.14 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=28.9
Q ss_pred HHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCc
Q 025980 146 VKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 193 (245)
Q Consensus 146 L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da 193 (245)
.++.|.+.+++.+-..|.|.. +|.-|..+|+ +++|+-..
T Consensus 77 a~~~g~~~vv~~~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~ 115 (365)
T cd06446 77 AKRMGKKRVIAETGAGQHGVA----TATACALFGL-----ECEIYMGA 115 (365)
T ss_pred HHHcCCCeEEEecCchHHHHH----HHHHHHHhCC-----CeEEEEcC
Confidence 346788888775555777774 8888889999 88777644
No 24
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=38.02 E-value=60 Score=28.52 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=39.8
Q ss_pred EEecCcccccCCcccCCCcchHHHHHHhCCCC---EEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 121 IRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIR---KLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 121 vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~---~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
++-|...--..++++.++...+...+++.|.. +.+++.-..|.|.. .|.-|..+|+ +++|+-...
T Consensus 19 i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~a----lA~~a~~~G~-----~~~i~vp~~ 86 (291)
T cd01561 19 IYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIG----LAMVAAAKGY-----RFIIVMPET 86 (291)
T ss_pred EEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHH----HHHHHHHcCC-----eEEEEECCC
Confidence 44454322222444433333344455566652 45677888888885 7888888999 888877554
No 25
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=36.34 E-value=97 Score=27.47 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHhCCCCEEEEEe-eecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 146 VKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 146 L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
.+++|.+.|+-+| ...|.+.. .|.-+..+|| +++++-+..
T Consensus 51 a~~~g~~~vv~~g~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~~ 91 (311)
T TIGR01275 51 ALSKGADTVITVGAIQSNHARA----TALAAKKLGL-----DAVLVLREK 91 (311)
T ss_pred HHHcCCCEEEEcCCchhHHHHH----HHHHHHHhCC-----ceEEEecCC
Confidence 3457888898886 56677775 7788888999 888887763
No 26
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=36.33 E-value=60 Score=29.17 Aligned_cols=41 Identities=10% Similarity=0.099 Sum_probs=29.4
Q ss_pred HHHHhCC---CCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 144 DWVKNHQ---IRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 144 ~~L~~~g---i~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
..+.+.| .++|+.++ ..|.++. .|.-+..+|| +++|+....
T Consensus 41 ~~a~~~g~~~~~~vv~aS-sGN~g~a----lA~~a~~~G~-----~~~iv~p~~ 84 (316)
T cd06448 41 QKSAKQGLNECVHVVCSS-GGNAGLA----AAYAARKLGV-----PCTIVVPES 84 (316)
T ss_pred HHHHHhhcccCCeEEEeC-CcHHHHH----HHHHHHHcCC-----CEEEEECCC
Confidence 3344455 67777766 5788875 7788888999 888877664
No 27
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=36.09 E-value=85 Score=28.34 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=31.6
Q ss_pred HHHHhCCCCEEEEEe-eecCceeccchhhHHHHHHcCCCCCCceEEEecCc
Q 025980 144 DWVKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 193 (245)
Q Consensus 144 ~~L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da 193 (245)
+..++.|+.+|+-+| ...|.|.. +|.-|..+|+ +++|+.+.
T Consensus 60 ~~a~~~G~~~vvs~G~s~GN~g~a----lA~aa~~~G~-----~~~iv~~~ 101 (337)
T PRK12390 60 PDALAQGADTLVSIGGVQSNHTRQ----VAAVAAHLGM-----KCVLVQEN 101 (337)
T ss_pred HHHHHcCCCEEEEeCCCccHHHHH----HHHHHHHcCC-----eEEEEeCC
Confidence 334568999988876 66788875 8899999999 88888543
No 28
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=35.69 E-value=77 Score=29.90 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHH
Q 025980 142 FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHV 221 (245)
Q Consensus 142 L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~ 221 (245)
.....++.|++++++..-+.+.|. +.|..|...|+ +++|+-..++. ... ..
T Consensus 108 ~~~~a~~~G~~~~vtetssGN~G~----alA~aaa~~Gl-----~~~V~mp~~s~-~~k-------------------~~ 158 (419)
T TIGR01415 108 QAYYAKIEGAKRLVTETGAGQWGS----ALSLAGALFGL-----ECKVFMVRVSF-NQK-------------------PY 158 (419)
T ss_pred HHHHHHHcCCCeEEEecCchHHHH----HHHHHHHHcCC-----cEEEEEeCCCc-ccC-------------------HH
Confidence 444556789999887644577776 47888888999 77776654321 111 01
Q ss_pred HHHHHHHCCcEEeecc
Q 025980 222 GLYMAKERGAKIANQL 237 (245)
Q Consensus 222 ~l~~l~~~~a~v~~s~ 237 (245)
-...|+..||+|+.+.
T Consensus 159 k~~~m~~~GA~Vi~~~ 174 (419)
T TIGR01415 159 RKYLMELYGAEVIPSP 174 (419)
T ss_pred HHHHHHHcCCEEEEEC
Confidence 1357899999998654
No 29
>PRK10098 putative dehydrogenase; Provisional
Probab=32.85 E-value=51 Score=30.37 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=34.4
Q ss_pred ceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCC
Q 025980 27 VTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHP 86 (245)
Q Consensus 27 ~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~ 86 (245)
..++++||-||+|-. +. .-..+..+++.+|+.|+-++.+++.|+-
T Consensus 77 ~~a~~~vDg~~g~G~-----~a----------~~~Am~~aie~Ar~~Gi~~v~vrnS~H~ 121 (350)
T PRK10098 77 AGAVLTLDGDRGFGQ-----VV----------AHEAMALGIERARQHGICAVALRNSHHI 121 (350)
T ss_pred CCcEEEEECCCCccH-----HH----------HHHHHHHHHHHHHHhCEEEEEEecCCCc
Confidence 679999999998832 21 1244678899999999999999876553
No 30
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=31.74 E-value=78 Score=26.86 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=37.3
Q ss_pred EEecCcccccCCcccCCCcchHHHHHHhCCC--CEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 121 IRRKDCFDGYFGSIEDDGSNVFVDWVKNHQI--RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 121 vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi--~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
++-|.......+.+++++...+...+++.|. ...+++.-..|.+.. .|.-|...|+ +++++...-
T Consensus 17 l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~a----lA~~a~~~g~-----~~~v~~p~~ 83 (244)
T cd00640 17 IYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIA----LAAAAARLGL-----KCTIVMPEG 83 (244)
T ss_pred EEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHH----HHHHHHHcCC-----CEEEEECCC
Confidence 4444433322244333332234444555663 455666656788864 7778888999 887776554
No 31
>PRK07591 threonine synthase; Validated
Probab=31.12 E-value=99 Score=29.04 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=38.3
Q ss_pred EEecC-cccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCc
Q 025980 121 IRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 193 (245)
Q Consensus 121 vi~K~-~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da 193 (245)
+.-|. ..+. .+++++++...+...+++.|.+.| +++-..|.+.. .|.-|...|+ +++|+-..
T Consensus 107 l~~K~E~~nP-tGSfKdRga~~~v~~A~~~g~~~v-v~aSsGN~g~a----lA~~aa~~Gl-----~~~I~vP~ 169 (421)
T PRK07591 107 LYIKDDSVNP-THSFKDRVVSVALTAARELGFTTV-ACASTGNLANS----VAAHAARAGL-----DSCVFIPA 169 (421)
T ss_pred EEEEeCCCCC-ccChHHHHHHHHHHHHHHcCCCEE-EEeCCCHHHHH----HHHHHHHcCC-----CEEEEEcC
Confidence 34443 3444 344444433334455667888887 56788888875 6667778999 77776554
No 32
>PRK10426 alpha-glucosidase; Provisional
Probab=30.32 E-value=3.5e+02 Score=27.02 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=23.2
Q ss_pred hHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCC
Q 025980 141 VFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGF 180 (245)
Q Consensus 141 ~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy 180 (245)
.+.+.|+++|++-++++ .-.+++.. ..-..+.++||
T Consensus 273 ~mi~~L~~~G~k~v~~i--~P~v~~~~--~~y~e~~~~gy 308 (635)
T PRK10426 273 SRIKQLNEEGIQFLGYI--NPYLASDG--DLCEEAAEKGY 308 (635)
T ss_pred HHHHHHHHCCCEEEEEE--cCccCCCC--HHHHHHHHCCc
Confidence 57778888888766663 33334331 35677888888
No 33
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=30.08 E-value=1.2e+02 Score=24.26 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=35.6
Q ss_pred cCCCCceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCC
Q 025980 22 LPDDVVTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHP 86 (245)
Q Consensus 22 l~~~~~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~ 86 (245)
++|++.+++-++|+....+.-.. ..+.+ ...+++...+.|.|||...|..++
T Consensus 37 iDPG~ttgiAildL~G~~l~l~S----~R~~~---------~~evi~~I~~~G~PviVAtDV~p~ 88 (138)
T PF04312_consen 37 IDPGTTTGIAILDLDGELLDLKS----SRNMS---------RSEVIEWISEYGKPVIVATDVSPP 88 (138)
T ss_pred ECCCceeEEEEEecCCcEEEEEe----ecCCC---------HHHHHHHHHHcCCEEEEEecCCCC
Confidence 68988999999999988876311 11111 134455666789999988887543
No 34
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=29.73 E-value=1.3e+02 Score=27.78 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCc
Q 025980 146 VKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 193 (245)
Q Consensus 146 L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da 193 (245)
.++.|.+.+++..-+.+.|.. .|.-|...|+ +++|+-..
T Consensus 93 a~~~g~~~vi~e~ssGN~G~a----lA~~a~~~Gl-----~~~Iv~p~ 131 (385)
T TIGR00263 93 AKRMGKKRIIAETGAGQHGVA----TATAAALLGL-----DCEVYMGA 131 (385)
T ss_pred HHHcCCCEEEEEcCcHHHHHH----HHHHHHHcCC-----CEEEEecC
Confidence 345677888775556667774 7888889999 88887654
No 35
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=29.00 E-value=1e+02 Score=26.82 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=33.1
Q ss_pred CceEEEEEeccc-cccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEec
Q 025980 26 VVTGLVLVDIIN-GFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLD 82 (245)
Q Consensus 26 ~~tALlVID~Qn-~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d 82 (245)
.++.|++||.|- .|-..+ .+ -.+...+....+-+..+|.+|.|||-...
T Consensus 64 krpIv~lVD~~sQa~grre--El------lGi~~alAhla~a~a~AR~~GHpvI~Lv~ 113 (234)
T PF06833_consen 64 KRPIVALVDVPSQAYGRRE--EL------LGINQALAHLAKAYALARLAGHPVIGLVY 113 (234)
T ss_pred CCCEEEEEeCCccccchHH--HH------hhHHHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 478999999984 332211 01 12344566777778899999999998743
No 36
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=28.96 E-value=1.3e+02 Score=26.72 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=34.0
Q ss_pred CcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCccc
Q 025980 132 GSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 195 (245)
Q Consensus 132 ~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~a 195 (245)
+++++++...+...+.+.|.++|+.. -..|.|.. .|.-+..+|+ +++++-+...
T Consensus 51 GS~K~R~a~~~l~~a~~~g~~~vv~~-SsGN~g~a----lA~~a~~~G~-----~~~ivvp~~~ 104 (324)
T cd01563 51 GSFKDRGMTVAVSKAKELGVKAVACA-STGNTSAS----LAAYAARAGI-----KCVVFLPAGK 104 (324)
T ss_pred ccHHHhhHHHHHHHHHHcCCCEEEEe-CCCHHHHH----HHHHHHHcCC-----ceEEEEeCCC
Confidence 33333333334444555777766544 67788875 7778888999 8888775543
No 37
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=28.45 E-value=1.3e+02 Score=18.86 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEecc
Q 025980 58 GMINESARLARAFCDRRLPVMAFLDT 83 (245)
Q Consensus 58 ~iv~~i~~li~~~r~~g~pVi~~~d~ 83 (245)
.+-.++.++++.+...+ ||+.++..
T Consensus 6 e~r~~~~~~l~~v~~~~-pv~It~~g 30 (52)
T TIGR01552 6 EAKNKLGELLKRVRDGE-PVTITKRG 30 (52)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEEECC
Confidence 34567888999987777 99999653
No 38
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.30 E-value=42 Score=20.21 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=10.6
Q ss_pred chHHHHHHhCCCC
Q 025980 140 NVFVDWVKNHQIR 152 (245)
Q Consensus 140 ~~L~~~L~~~gi~ 152 (245)
.+|.+||.++||.
T Consensus 7 ~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 7 SDLKSWLKSHGIP 19 (38)
T ss_pred HHHHHHHHHcCCC
Confidence 3899999998864
No 39
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=27.14 E-value=2.8e+02 Score=24.89 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=32.8
Q ss_pred eEEEecCcccc-cCcccchhhccccccCCChHHHHHHHHH--HHHHCCcEEeeccchh
Q 025980 186 EVVVYSAACAT-FDIPTHVATHTKGALAHPQEFMHHVGLY--MAKERGAKIANQLSFS 240 (245)
Q Consensus 186 ~V~Vv~Da~as-~~~~~h~a~~~~~~~~~~~~~~h~~~l~--~l~~~~a~v~~s~~~~ 240 (245)
+.+|..|-|-. ++...|-.--.|++.....++.|+.+-. .-+..||+|+...+..
T Consensus 124 dL~i~cDVclc~YsshGHcGll~EdG~i~~~esv~rlaevAv~yAkAGa~vVapSDmm 181 (340)
T KOG2794|consen 124 DLVIACDVCLCEYSSHGHCGLLGEDGVINNDESVHRLAEVAVSYAKAGADVVAPSDMM 181 (340)
T ss_pred ceEEEeeeeeccccCCCccceecccccccCHHHHHHHHHHHHHHHhcCCceecchHhh
Confidence 55666665543 4555565555566666666666766542 2345799998765544
No 40
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=26.55 E-value=1.5e+02 Score=27.70 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=41.8
Q ss_pred HhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHH
Q 025980 147 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMA 226 (245)
Q Consensus 147 ~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l 226 (245)
++.|.+.+|+.--+.+.++. ||.-|...|+ +++|+-.... ... ....+..|
T Consensus 102 ~~~Gk~~vIaetgaGnhG~A----~A~~aa~~Gl-----~c~I~mp~~d-~~r-------------------q~~nv~~m 152 (397)
T PRK04346 102 KRMGKKRIIAETGAGQHGVA----TATAAALLGL-----ECVIYMGAED-VER-------------------QALNVFRM 152 (397)
T ss_pred HHcCCCeEEEecCcHHHHHH----HHHHHHHcCC-----cEEEEecCCc-hhh-------------------hhhHHHHH
Confidence 45788888774455677775 8888899999 8888775431 111 22335678
Q ss_pred HHCCcEEeec
Q 025980 227 KERGAKIANQ 236 (245)
Q Consensus 227 ~~~~a~v~~s 236 (245)
+..||+|+..
T Consensus 153 ~~lGA~Vv~v 162 (397)
T PRK04346 153 KLLGAEVVPV 162 (397)
T ss_pred HHCCCEEEEE
Confidence 8999999753
No 41
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=26.20 E-value=75 Score=29.05 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=34.0
Q ss_pred ceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCC
Q 025980 27 VTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHH 85 (245)
Q Consensus 27 ~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~ 85 (245)
+.+.+++|-||.| |.+. .-..+...++.+|+.|+-++.+++.|+
T Consensus 73 ~~a~a~~Dg~~g~-----G~~~----------~~~am~~aiekAr~~Gi~~v~vrns~H 116 (332)
T PRK13260 73 LGAIEQWDAQRAI-----GNLT----------AKKMMDRAIELARDHGIGLVALRNANH 116 (332)
T ss_pred CCcEEEEECCCCc-----hHHH----------HHHHHHHHHHHHHHhCEEEEEEcCCCc
Confidence 6799999999988 3221 134467889999999999999987654
No 42
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=26.13 E-value=67 Score=27.74 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=36.0
Q ss_pred hHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEec
Q 025980 141 VFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYS 191 (245)
Q Consensus 141 ~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~ 191 (245)
.+.++|+..|+..+..-|.+.|-++. +-|+.+...|+ +++|++
T Consensus 89 ~~~~~l~~~gi~~i~~~~~EADD~ia---~la~~~~~~g~-----~~~I~S 131 (240)
T cd00008 89 LIKELLEALGIPVLEIEGYEADDVIG---TLAKKAEAEGY-----KVVIVS 131 (240)
T ss_pred HHHHHHHHCCCCEEecCCcCHHHHHH---HHHHHHHHcCC-----eEEEEe
Confidence 57788888999999999999987776 56777778899 888887
No 43
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=25.92 E-value=1.7e+02 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHhCCCCEEEEEe-eecCceeccchhhHHHHHHcCCCCCCceEEEecCcccc
Q 025980 146 VKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 196 (245)
Q Consensus 146 L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as 196 (245)
.+++|+++|+-+| -..|.+.. .|.-+..+|+ +++|+-+...+
T Consensus 47 a~~~g~~~vv~~ggs~GN~g~a----lA~~a~~~G~-----~~~i~v~~~~~ 89 (307)
T cd06449 47 ALAKGADTLVTVGGIQSNHTRQ----VAAVAAKLGL-----KCVLVQENWVP 89 (307)
T ss_pred HHHcCCCEEEECCCchhHHHHH----HHHHHHHcCC-----eEEEEecCCCC
Confidence 3457888888886 56677774 7888888999 88888775443
No 44
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=25.74 E-value=1.4e+02 Score=28.33 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=42.6
Q ss_pred HHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHH
Q 025980 143 VDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVG 222 (245)
Q Consensus 143 ~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~ 222 (245)
..+.++.|+++++...-+.+.|.. .|..|...|+ +++|+-.-++ +... ..-
T Consensus 118 a~~a~~~G~~~~vtetgsGN~G~a----lA~aaa~~Gl-----~~~V~mp~~s-~~~k-------------------~~r 168 (427)
T PRK12391 118 AYYNKKEGIKRLTTETGAGQWGSA----LALACALFGL-----ECTVFMVRVS-YEQK-------------------PYR 168 (427)
T ss_pred HHHHHHCCCCEEEEccCchHHHHH----HHHHHHHcCC-----cEEEEEecCC-cccC-------------------HHH
Confidence 344577898888764334666664 7788888999 8877765432 2211 011
Q ss_pred HHHHHHCCcEEeecc
Q 025980 223 LYMAKERGAKIANQL 237 (245)
Q Consensus 223 l~~l~~~~a~v~~s~ 237 (245)
...|+..||+|+.+.
T Consensus 169 ~~~mr~~GA~Vi~~~ 183 (427)
T PRK12391 169 RSLMETYGAEVIPSP 183 (427)
T ss_pred HHHHHHCCCEEEEEC
Confidence 247899999998754
No 45
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=25.56 E-value=1.7e+02 Score=26.37 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=28.9
Q ss_pred HHhCCCCEEEE-EeeecCceeccchhhHHHHHHcCCCCCCceEEEecCc
Q 025980 146 VKNHQIRKLVV-VGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 193 (245)
Q Consensus 146 L~~~gi~~lii-~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da 193 (245)
.++.|.++|+. .+...|.+. +.|.-|..+|+ +++++-..
T Consensus 65 a~~~G~~~vv~~~~ssGN~g~----alA~~a~~~G~-----~~~ivvp~ 104 (329)
T PRK14045 65 ALSRGADVVITVGAVHSNHAF----VTGLAAKKLGL-----DAVLVLRG 104 (329)
T ss_pred HHHcCCCEEEEeCccHHHHHH----HHHHHHHHcCC-----eEEEEEeC
Confidence 44578888885 466677776 48888889999 77777653
No 46
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=25.54 E-value=1.4e+02 Score=27.34 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=30.7
Q ss_pred HHHhCCCCEEEEEee--------------ecCceeccchhhHHHHHHcCCCCCCceEEEecCcccc-cCcccc
Q 025980 145 WVKNHQIRKLVVVGV--------------CTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT-FDIPTH 202 (245)
Q Consensus 145 ~L~~~gi~~lii~Gv--------------~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as-~~~~~h 202 (245)
.+.+.||..|+|.|+ ..+.+|- .+++...+ -| | ++.|+.|-|-. ++...|
T Consensus 65 ~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~---~air~iK~-~~--p--dl~vi~Dvclc~YT~hGH 129 (324)
T PF00490_consen 65 EAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQ---RAIRAIKK-AF--P--DLLVITDVCLCEYTSHGH 129 (324)
T ss_dssp HHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHH---HHHHHHHH-HS--T--TSEEEEEE-STTTBTSSS
T ss_pred HHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHH---HHHHHHHH-hC--C--CcEEEEecccccccCCCc
Confidence 344699999999999 3444554 34444444 34 2 78999997765 666667
No 47
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=24.39 E-value=2.2e+02 Score=27.45 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=26.1
Q ss_pred ceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEe
Q 025980 27 VTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFL 81 (245)
Q Consensus 27 ~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~ 81 (245)
..|+.|||.-++. -++..+|.+.||-+|+||+...
T Consensus 106 DsAvMVIDaAKGi--------------------E~qT~KLfeVcrlR~iPI~TFi 140 (528)
T COG4108 106 DSAVMVIDAAKGI--------------------EPQTLKLFEVCRLRDIPIFTFI 140 (528)
T ss_pred heeeEEEecccCc--------------------cHHHHHHHHHHhhcCCceEEEe
Confidence 3688888865532 2346799999999999998663
No 48
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=23.97 E-value=1.2e+02 Score=28.10 Aligned_cols=53 Identities=8% Similarity=0.147 Sum_probs=37.8
Q ss_pred EEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHHHHCCcE
Q 025980 153 KLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAK 232 (245)
Q Consensus 153 ~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l~~~~a~ 232 (245)
+-+|+.-..|.|+. .|.-|..+|| +++|+-....+. .-+..|+.+||+
T Consensus 112 ~~vV~aSsGN~G~a----lA~~a~~~G~-----~~~ivvp~~~~~-----------------------~k~~~lr~~GA~ 159 (368)
T PLN02556 112 TTLIEPTSGNMGIS----LAFMAAMKGY-----KMILTMPSYTSL-----------------------ERRVTMRAFGAE 159 (368)
T ss_pred CEEEEeCCchHHHH----HHHHHHHcCC-----CEEEEECCCCCH-----------------------HHHHHHHHcCCE
Confidence 45777999999986 8888889999 888875443111 113468888999
Q ss_pred Eeecc
Q 025980 233 IANQL 237 (245)
Q Consensus 233 v~~s~ 237 (245)
|+-+.
T Consensus 160 Vi~~~ 164 (368)
T PLN02556 160 LVLTD 164 (368)
T ss_pred EEEEC
Confidence 88653
No 49
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=23.76 E-value=1.8e+02 Score=25.27 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=41.6
Q ss_pred HHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHH
Q 025980 142 FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHV 221 (245)
Q Consensus 142 L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~ 221 (245)
+....++++.++| +++-..|.|.. .|..|..+|+ +++++-.... -..
T Consensus 47 ~l~~a~~~~~~~v-v~assGN~g~a----~A~~a~~~g~-----~~~i~~p~~~-----------------------~~~ 93 (306)
T PF00291_consen 47 LLSRAKEKGGRTV-VGASSGNHGRA----LAYAAARLGL-----KCTIVVPEDV-----------------------SPE 93 (306)
T ss_dssp HHHHHHHTTTSEE-EEESSSHHHHH----HHHHHHHHTC-----EEEEEEETTS-----------------------HHH
T ss_pred hhhhcccccccee-eeeccCCceeh----hhhhhhhccc-----cceeeecccc-----------------------ccc
Confidence 3333445678888 88888899886 7778888899 8888773221 122
Q ss_pred HHHHHHHCCcEEee
Q 025980 222 GLYMAKERGAKIAN 235 (245)
Q Consensus 222 ~l~~l~~~~a~v~~ 235 (245)
-+..|+..|++|+.
T Consensus 94 ~~~~~~~~Ga~v~~ 107 (306)
T PF00291_consen 94 KLKQMRALGAEVIL 107 (306)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred cccceeeecceEEE
Confidence 34567888998863
No 50
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=23.72 E-value=88 Score=28.84 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=33.9
Q ss_pred ceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCC
Q 025980 27 VTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHP 86 (245)
Q Consensus 27 ~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~ 86 (245)
..+.++||-+|+| |.+. .-..+...++.+|+.|+-++.+++.|+-
T Consensus 73 ~~a~a~vDg~~g~-----G~~a----------~~~Am~~aiekAr~~Gi~~v~v~ns~H~ 117 (349)
T TIGR03175 73 GPCTAIFHGDNGA-----GQVA----------AKMAMEHAIEIAKKSGVAVVGISRMSHS 117 (349)
T ss_pred cCcEEEEECCCCc-----hHHH----------HHHHHHHHHHHHHHhCEEEEEecCCCcc
Confidence 5799999999988 3221 1234677899999999999999876543
No 51
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=23.13 E-value=1.7e+02 Score=25.71 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=32.6
Q ss_pred CcccCCCcchHHHHHHhCCC---CEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCc
Q 025980 132 GSIEDDGSNVFVDWVKNHQI---RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 193 (245)
Q Consensus 132 ~t~~~~~~~~L~~~L~~~gi---~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da 193 (245)
+.+++++...+...+.+.|. .+.+++.-..|.|.. .|.-|...|+ +++|+-..
T Consensus 34 GS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~a----lA~~a~~~Gl-----~~~i~vp~ 89 (298)
T TIGR01139 34 GSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIA----LAMVAAARGY-----KLILTMPE 89 (298)
T ss_pred CcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHH----HHHHHHHcCC-----eEEEEeCC
Confidence 33333333333334444554 134578888888885 7778888999 87777544
No 52
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.69 E-value=2.7e+02 Score=23.91 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=35.1
Q ss_pred HHHHHHHhhCCCcEEEEeccCCCCCCCCCCCCcccCCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHH
Q 025980 64 ARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFV 143 (245)
Q Consensus 64 ~~li~~~r~~g~pVi~~~d~h~~~~p~~~~~~h~~~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~ 143 (245)
..|.+.|+..++|+|.+. +.|..+.|.--.. .-+.|++.+.+.. .+.
T Consensus 117 ~~L~~~c~~~~ip~I~s~-------------------g~g~~~dp~~i~i------~di~~t~~~pla~--------~~R 163 (231)
T cd00755 117 VALIAYCRKRKIPVISSM-------------------GAGGKLDPTRIRV------ADISKTSGDPLAR--------KVR 163 (231)
T ss_pred HHHHHHHHHhCCCEEEEe-------------------CCcCCCCCCeEEE------ccEeccccCcHHH--------HHH
Confidence 457788899999999883 1333444332111 1255666666654 578
Q ss_pred HHHHhCCCC
Q 025980 144 DWVKNHQIR 152 (245)
Q Consensus 144 ~~L~~~gi~ 152 (245)
..||++|+.
T Consensus 164 ~~Lrk~~~~ 172 (231)
T cd00755 164 KRLRKRGIF 172 (231)
T ss_pred HHHHHcCCC
Confidence 888888886
No 53
>PLN00011 cysteine synthase
Probab=22.64 E-value=2.1e+02 Score=25.64 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=30.3
Q ss_pred HHHHHHhCC-----CCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCccc
Q 025980 142 FVDWVKNHQ-----IRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 195 (245)
Q Consensus 142 L~~~L~~~g-----i~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~a 195 (245)
+...+.+.| .++| ++.-..|.|.. .|.-|..+|+ +++|+-....
T Consensus 55 ~l~~a~~~g~~~~g~~~v-v~aSsGN~g~a----lA~~a~~~G~-----~~~ivvp~~~ 103 (323)
T PLN00011 55 MIKDAEDKGLITPGKSTL-IEATAGNTGIG----LACIGAARGY-----KVILVMPSTM 103 (323)
T ss_pred HHHHHHHcCCCCCCCcEE-EEeCCChHHHH----HHHHHHHcCC-----eEEEEeCCCC
Confidence 334444555 3554 57888888885 7888888999 8887776543
No 54
>PRK08197 threonine synthase; Validated
Probab=22.62 E-value=2.1e+02 Score=26.55 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=38.8
Q ss_pred EEecC-cccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCc
Q 025980 121 IRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 193 (245)
Q Consensus 121 vi~K~-~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da 193 (245)
++-|. ..+. .+++++++...+.....++|.++|+ +.-..|.+.. .|.-|...|+ +++|+-..
T Consensus 97 l~~K~E~~nP-tGSfKdRga~~~i~~a~~~g~~~vv-~aSsGN~g~a----lA~~aa~~G~-----~~~v~vp~ 159 (394)
T PRK08197 97 LWVKDEGLNP-TGSFKARGLAVGVSRAKELGVKHLA-MPTNGNAGAA----WAAYAARAGI-----RATIFMPA 159 (394)
T ss_pred EEEEeCCCCC-CcCcHHhHHHHHHHHHHHcCCCEEE-EeCCcHHHHH----HHHHHHHcCC-----cEEEEEcC
Confidence 34444 3444 3555555544455556668887654 4567777775 7777778999 77777654
No 55
>smart00475 53EXOc 5'-3' exonuclease.
Probab=22.60 E-value=91 Score=27.35 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=35.9
Q ss_pred hHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEec
Q 025980 141 VFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYS 191 (245)
Q Consensus 141 ~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~ 191 (245)
.+.++|+..|+..+..-|++.|-.+. +-++.+...|+ .++|++
T Consensus 88 ~~~~~l~~~gi~~i~~~g~EADD~ia---tla~~~~~~g~-----~~~IvS 130 (259)
T smart00475 88 LIKELLDALGIPVLEVEGYEADDVIA---TLAKKAEAEGY-----EVRIVS 130 (259)
T ss_pred HHHHHHHHCCCCEEeeCCcCHHHHHH---HHHHHHHhCCC-----eEEEEe
Confidence 57788889999999999988887776 66777777899 898887
No 56
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.79 E-value=1.1e+02 Score=22.91 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhCCCcEEEEec
Q 025980 62 ESARLARAFCDRRLPVMAFLD 82 (245)
Q Consensus 62 ~i~~li~~~r~~g~pVi~~~d 82 (245)
.+.+.++.+|++|.|||.+.+
T Consensus 62 ~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 62 ETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred HHHHHHHHHHHcCCeEEEEEC
Confidence 456778889999999998853
No 57
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=21.67 E-value=1.5e+02 Score=28.08 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=48.3
Q ss_pred CCCCCCccccccccccCCCceEEEecCcccccCCcccCCCcchHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHc
Q 025980 99 AGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNR 178 (245)
Q Consensus 99 ~gt~g~ei~~~L~~~~~~~~~~vi~K~~~saF~~t~~~~~~~~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~ 178 (245)
+||-|-||...+....+ -+++.=+ -.+... +....|++.+. ++=|+|+.|+-|=. ...++..
T Consensus 201 qgTig~EIl~ql~~~~~---AI~vpVG-GGGLia--------GIat~vk~~~p-~vkIIGVEt~~a~~-----f~~sl~~ 262 (457)
T KOG1250|consen 201 QGTIGLEILEQLKEPDG---AIVVPVG-GGGLIA--------GIATGVKRVGP-HVKIIGVETEGAHS-----FNASLKA 262 (457)
T ss_pred cchHHHHHHHhhcCCCC---eEEEecC-CchhHH--------HHHHHHHHhCC-CCceEEEeecCcHH-----HHHHHhc
Confidence 47777787777764432 2333322 112222 56778888877 88999999999954 4556677
Q ss_pred CCCCCCceEEEecCccccc
Q 025980 179 GFLRPLEEVVVYSAACATF 197 (245)
Q Consensus 179 Gy~~~~~~V~Vv~Da~as~ 197 (245)
|-+.....+.-+.|+.+.-
T Consensus 263 g~~V~lp~i~s~AdglaV~ 281 (457)
T KOG1250|consen 263 GKPVTLPKITSLADGLAVK 281 (457)
T ss_pred CCeeecccccchhcccccc
Confidence 8732223444455555543
No 58
>PRK10717 cysteine synthase A; Provisional
Probab=21.56 E-value=1.7e+02 Score=26.20 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=33.7
Q ss_pred CcccCCCcchHHHHHHhCCC-C--EEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 132 GSIEDDGSNVFVDWVKNHQI-R--KLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 132 ~t~~~~~~~~L~~~L~~~gi-~--~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
+.++.++...+...+.+.|. . .-+++.-..|.|.. .|.-|..+|+ +++|+....
T Consensus 41 GS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~a----lA~~a~~~G~-----~~~vv~p~~ 97 (330)
T PRK10717 41 GSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIG----LALVAAARGY-----KTVIVMPET 97 (330)
T ss_pred CCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHH----HHHHHHHcCC-----cEEEEeCCC
Confidence 33333333334344445554 1 34777888888885 7778888999 777777554
No 59
>PLN02618 tryptophan synthase, beta chain
Probab=21.46 E-value=1.8e+02 Score=27.40 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=42.6
Q ss_pred HhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHH
Q 025980 147 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMA 226 (245)
Q Consensus 147 ~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l 226 (245)
++.|.+++|+.--+.+.|+. +|.-|...|+ +++|+-.... ... ....+..|
T Consensus 115 ~~~g~~~vIaesgaGNhG~A----lA~aaa~~Gl-----~~~I~m~~~~-~~~-------------------~~~nv~~m 165 (410)
T PLN02618 115 KRLGKKRIIAETGAGQHGVA----TATVCARFGL-----ECIVYMGAQD-MER-------------------QALNVFRM 165 (410)
T ss_pred HHcCCCEEEEEcCcHHHHHH----HHHHHHHcCC-----cEEEEEcCCc-hhh-------------------hhhhHHHH
Confidence 45788888877556788885 8888889999 8888876532 110 22334578
Q ss_pred HHCCcEEeec
Q 025980 227 KERGAKIANQ 236 (245)
Q Consensus 227 ~~~~a~v~~s 236 (245)
+..||+|+..
T Consensus 166 r~lGA~Vi~v 175 (410)
T PLN02618 166 RLLGAEVRPV 175 (410)
T ss_pred HHCCCEEEEE
Confidence 8899988754
No 60
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=21.44 E-value=4.1e+02 Score=22.82 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhCCCcEEEEeccCCCCCCCCCCCCcccCCCCCCcccc--cccc-----ccCCCceEEEecCcccccCCcc
Q 025980 62 ESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVP--ALQW-----IEKEPNVTIRRKDCFDGYFGSI 134 (245)
Q Consensus 62 ~i~~li~~~r~~g~pVi~~~d~h~~~~p~~~~~~h~~~gt~g~ei~~--~L~~-----~~~~~~~~vi~K~~~saF~~t~ 134 (245)
++.+.++.++..|..|+.+...-.-.+.....-.||-.+-++|.+.+ .+.. +.++-+.+-|+-. -|++
T Consensus 43 ~LLrr~r~~~~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEa---QFf~-- 117 (234)
T KOG3125|consen 43 ELLRRIRREIIAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEA---QFFG-- 117 (234)
T ss_pred HHHHHHHHHHhcCceEEEEEecCCcccchheeEeccCCcccccccCCchhHHHHHHHHhcCcceEEEecHH---HHhH--
Confidence 45567777777888887774321111111223345444445555442 2221 1122222333332 3555
Q ss_pred cCCCcchHHHHHHh---CCCCEEEEEeeecCce
Q 025980 135 EDDGSNVFVDWVKN---HQIRKLVVVGVCTDIC 164 (245)
Q Consensus 135 ~~~~~~~L~~~L~~---~gi~~lii~Gv~Td~C 164 (245)
+|.+++++ ..=+.|++.|+.+++=
T Consensus 118 ------dl~efc~evAd~~Gk~VivagLdgdF~ 144 (234)
T KOG3125|consen 118 ------DLYEFCREVADVHGKTVIVAGLDGDFK 144 (234)
T ss_pred ------HHHHHHHHHHhccCCEEEEEecCCchh
Confidence 68888876 2446899999998764
No 61
>PRK09482 flap endonuclease-like protein; Provisional
Probab=21.38 E-value=83 Score=27.70 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=40.7
Q ss_pred hHHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEec---CcccccC
Q 025980 141 VFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYS---AACATFD 198 (245)
Q Consensus 141 ~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~---Da~as~~ 198 (245)
.+.++|...|+..+..-|++.|-++. +-|..+.+.|+ +|+|++ |..--.+
T Consensus 88 ~i~~~l~~~gi~~~~~~g~EADDvIa---tla~~~~~~~~-----~v~I~S~DKDl~Qlv~ 140 (256)
T PRK09482 88 AIRAAFEELGIDSWHADGNEADDLIA---TLAVKVAQAGH-----QATIVSTDKGYCQLLS 140 (256)
T ss_pred HHHHHHHhCCCCEeccCCcCHHHHHH---HHHHHHHHCCC-----eEEEEECCCCccccCC
Confidence 46788888999999999999998888 66788888899 999987 5544333
No 62
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=20.70 E-value=1.1e+02 Score=28.14 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=34.3
Q ss_pred ceEEEEEeccccccCCCCCCCCCCCchhHHHhHHHHHHHHHHHHhhCCCcEEEEeccCCCC
Q 025980 27 VTGLVLVDIINGFCTVGAGNLAPREPNRQISGMINESARLARAFCDRRLPVMAFLDTHHPN 87 (245)
Q Consensus 27 ~tALlVID~Qn~f~~~~~g~l~~~~~~~~~~~iv~~i~~li~~~r~~g~pVi~~~d~h~~~ 87 (245)
..++++||-+|+| |.+. .-..+...++.+|+.|+-++.+++.|+-+
T Consensus 73 ~~a~a~vDg~~g~-----G~~a----------~~~Am~~aiekA~~~Gi~~v~vrnS~H~G 118 (349)
T PRK15025 73 GPCSAILHADNAA-----GQVA----------AKMGMEHAIETAKQNGVAVVGISRMGHSG 118 (349)
T ss_pred cCcEEEEECCCCc-----hHHH----------HHHHHHHHHHHHHHhCEEEEEEeCCCccc
Confidence 5688999999988 3221 12346788999999999999998765533
No 63
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=20.66 E-value=2.1e+02 Score=25.23 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=29.4
Q ss_pred HHHHhCCC---CEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 144 DWVKNHQI---RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 144 ~~L~~~gi---~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
..+.+.|. .+.+++.-..|.|.. .|.-|..+|+ +++|+.+..
T Consensus 48 ~~a~~~g~~~~g~~vv~aSsGN~g~a----lA~~a~~~G~-----~~~i~~p~~ 92 (290)
T TIGR01138 48 VEAEKRGEIKPGDVLIEATSGNTGIA----LAMIAALKGY-----RMKLLMPDN 92 (290)
T ss_pred HHHHHcCCCCCCCEEEEECCChHHHH----HHHHHHHcCC-----eEEEEECCC
Confidence 33444554 245777888888885 7778888999 888887654
No 64
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=20.64 E-value=1.6e+02 Score=27.50 Aligned_cols=41 Identities=5% Similarity=0.084 Sum_probs=28.2
Q ss_pred HHHHhCCC----CEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 144 DWVKNHQI----RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 144 ~~L~~~gi----~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
..+.+.|. ++ +++--..|.|.. .|..|..+|+ +++|+-...
T Consensus 51 ~~a~~~g~~~~g~~-vv~~ssGN~g~a----lA~~a~~~G~-----~~~iv~p~~ 95 (454)
T TIGR01137 51 EDAEASGRLKPGDT-IIEPTSGNTGIG----LALVAAIKGY-----KCIIVLPEK 95 (454)
T ss_pred HHHHHcCCCCCCCE-EEEeCCcHHHHH----HHHHHHHcCC-----eEEEEeCCC
Confidence 33444555 55 455588888885 7888888999 888877543
No 65
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=20.20 E-value=1.9e+02 Score=28.72 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=42.1
Q ss_pred HhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHH
Q 025980 147 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMA 226 (245)
Q Consensus 147 ~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l 226 (245)
++.|.+++++..-+.+.++. +|.-|...|+ +++|+-.... .+. ....+..|
T Consensus 314 ~~~g~~~vi~e~gsGnhG~A----~A~~aa~~Gl-----~~~I~m~~~~---~~~-----------------~~~nv~~m 364 (610)
T PRK13803 314 KRMGKTRIIAETGAGQHGVA----TATACALFGL-----KCTIFMGEED---IKR-----------------QALNVERM 364 (610)
T ss_pred HHcCCCEEEEecChHHHHHH----HHHHHHHcCC-----cEEEEEeCCc---ccc-----------------hhhHHHHH
Confidence 45788888875555788885 8888889999 8888754331 110 22335678
Q ss_pred HHCCcEEeec
Q 025980 227 KERGAKIANQ 236 (245)
Q Consensus 227 ~~~~a~v~~s 236 (245)
+..||+|+..
T Consensus 365 ~~~GA~Vi~v 374 (610)
T PRK13803 365 KLLGANVIPV 374 (610)
T ss_pred HHCCCEEEEE
Confidence 8899988753
No 66
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=20.18 E-value=2.1e+02 Score=26.83 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=40.7
Q ss_pred HhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcccccCcccchhhccccccCCChHHHHHHHHHHH
Q 025980 147 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMA 226 (245)
Q Consensus 147 ~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as~~~~~h~a~~~~~~~~~~~~~~h~~~l~~l 226 (245)
++.|.+.+|+.--+.+.++. +|.-|..+|+ +++|+-... +.+. ....+..|
T Consensus 106 ~~~G~~~vI~etgsGnhG~A----~A~aaa~~Gl-----~~~I~m~~~---d~~~-----------------q~~nv~~m 156 (402)
T PRK13028 106 KRMGKKRLIAETGAGQHGVA----TATAAALFGL-----ECEIYMGEV---DIER-----------------QHPNVFRM 156 (402)
T ss_pred HHcCCCeEEEecCcHHHHHH----HHHHHHHcCC-----CEEEEECCC---cchh-----------------hHHHHHHH
Confidence 45687788775556667775 8888889999 888885432 1110 12335678
Q ss_pred HHCCcEEeec
Q 025980 227 KERGAKIANQ 236 (245)
Q Consensus 227 ~~~~a~v~~s 236 (245)
+..||+|+..
T Consensus 157 r~~GAeVi~v 166 (402)
T PRK13028 157 KLLGAEVVPV 166 (402)
T ss_pred HHcCCEEEEE
Confidence 8888888753
No 67
>PRK07476 eutB threonine dehydratase; Provisional
Probab=20.13 E-value=1.5e+02 Score=26.62 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=29.4
Q ss_pred HHHHHHhCCCCEEEEEeeecCceeccchhhHHHHHHcCCCCCCceEEEecCcc
Q 025980 142 FVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 194 (245)
Q Consensus 142 L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~ 194 (245)
+...+.+.+.++=+|+--..|.|.. .|.-|...|+ +++|+-.-.
T Consensus 57 ~i~~a~~~~~~~gvv~aSsGN~g~a----lA~~a~~~G~-----~~~i~vp~~ 100 (322)
T PRK07476 57 ALLSLSAQERARGVVTASTGNHGRA----LAYAARALGI-----RATICMSRL 100 (322)
T ss_pred HHHhhhhhhhCCeEEEECCChHHHH----HHHHHHHhCC-----CEEEEeCCC
Confidence 3344555555542556688888885 7778888999 877776443
No 68
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=20.10 E-value=2.5e+02 Score=25.21 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=29.5
Q ss_pred HHhCCCCEEEEEe-eecCceeccchhhHHHHHHcCCCCCCceEEEecCcccc
Q 025980 146 VKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 196 (245)
Q Consensus 146 L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V~Vv~Da~as 196 (245)
.++.|.++|+-+| -..|.+.. .|.-+..+|+ +++|+-+....
T Consensus 59 a~~~g~~~vvt~g~s~gN~g~a----lA~~a~~~G~-----~~~i~vp~~~~ 101 (331)
T PRK03910 59 ALAQGADTLITAGAIQSNHARQ----TAAAAAKLGL-----KCVLLLENPVP 101 (331)
T ss_pred HHHcCCCEEEEcCcchhHHHHH----HHHHHHHhCC-----cEEEEEcCCCC
Confidence 3457888888665 34466664 7778888999 88887776543
Done!