Query 025981
Match_columns 245
No_of_seqs 175 out of 458
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 11:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00136 eukaryotic translatio 100.0 1.7E-84 3.7E-89 580.9 31.8 245 1-245 1-247 (247)
2 COG1976 TIF6 Translation initi 100.0 2.4E-79 5.2E-84 534.3 25.5 220 1-224 2-221 (222)
3 KOG3185 Translation initiation 100.0 5.4E-79 1.2E-83 526.3 23.1 245 1-245 1-245 (245)
4 PF01912 eIF-6: eIF-6 family; 100.0 4.7E-74 1E-78 499.9 14.1 199 3-204 1-199 (199)
5 PRK04046 translation initiatio 100.0 4.3E-65 9.4E-70 450.8 29.3 222 1-226 1-222 (222)
6 cd00527 IF6 Ribosome anti-asso 100.0 7E-65 1.5E-69 449.1 29.3 219 3-223 2-220 (220)
7 TIGR00323 eIF-6 translation in 100.0 8.5E-63 1.8E-67 434.5 26.8 215 4-224 1-215 (215)
8 smart00654 eIF6 translation in 100.0 7.5E-61 1.6E-65 418.1 25.1 200 3-204 1-200 (200)
9 smart00654 eIF6 translation in 100.0 1.1E-45 2.3E-50 322.8 22.0 173 50-226 2-177 (200)
10 cd00527 IF6 Ribosome anti-asso 100.0 2.5E-45 5.4E-50 324.5 22.4 175 1-178 44-220 (220)
11 TIGR00323 eIF-6 translation in 100.0 6.2E-45 1.3E-49 321.1 21.9 172 1-179 42-215 (215)
12 PRK04046 translation initiatio 100.0 1.2E-43 2.6E-48 314.1 23.0 175 48-226 2-177 (222)
13 PTZ00136 eukaryotic translatio 100.0 1.4E-32 3.1E-37 246.4 16.4 127 8-181 99-226 (247)
14 PF01912 eIF-6: eIF-6 family; 100.0 5.3E-31 1.2E-35 229.9 10.0 127 99-226 6-176 (199)
15 COG1976 TIF6 Translation initi 100.0 2.7E-29 5.9E-34 220.0 15.6 127 99-226 9-178 (222)
16 KOG3185 Translation initiation 99.8 9.9E-19 2.2E-23 152.1 10.9 128 99-226 8-137 (245)
17 PRK04323 hypothetical protein; 50.4 82 0.0018 24.8 6.6 67 104-174 10-78 (91)
18 cd01974 Nitrogenase_MoFe_beta 42.3 1.1E+02 0.0023 29.7 7.6 99 124-243 177-293 (435)
19 cd05402 NT_PAP_TUTase Nucleoti 42.3 64 0.0014 24.7 5.0 68 4-71 21-105 (114)
20 COG3473 Maleate cis-trans isom 41.7 57 0.0012 29.7 5.2 117 14-142 71-212 (238)
21 PRK14548 50S ribosomal protein 37.1 72 0.0016 24.5 4.5 45 115-181 4-49 (84)
22 PF02274 Amidinotransf: Amidin 36.8 2.5E+02 0.0054 24.9 8.7 109 72-181 137-257 (281)
23 PRK05567 inosine 5'-monophosph 34.7 2.1E+02 0.0045 28.3 8.4 118 18-152 9-135 (486)
24 PF13167 GTP-bdg_N: GTP-bindin 34.2 1.1E+02 0.0023 24.1 5.1 64 166-229 9-86 (95)
25 TIGR03380 agmatine_aguA agmati 34.2 3.2E+02 0.007 26.2 9.3 60 118-180 122-193 (357)
26 PF09419 PGP_phosphatase: Mito 33.5 62 0.0013 27.9 4.0 35 105-141 79-113 (168)
27 TIGR01286 nifK nitrogenase mol 31.7 1.2E+02 0.0026 30.4 6.3 65 159-244 290-354 (515)
28 COG2957 Peptidylarginine deimi 31.0 2.7E+02 0.0059 26.8 8.1 106 76-181 66-199 (346)
29 KOG1511 Mevalonate kinase MVK/ 30.4 56 0.0012 31.9 3.5 46 13-58 325-377 (397)
30 PLN02591 tryptophan synthase 30.1 1.5E+02 0.0033 27.0 6.1 111 67-210 107-221 (250)
31 COG3836 HpcH 2,4-dihydroxyhept 30.1 1.7E+02 0.0038 27.1 6.4 164 8-177 14-202 (255)
32 cd01972 Nitrogenase_VnfE_like 29.7 1.3E+02 0.0027 29.1 5.8 100 124-242 182-282 (426)
33 PRK04115 hypothetical protein; 29.1 1.1E+02 0.0023 25.9 4.6 76 35-137 23-102 (137)
34 PF02274 Amidinotransf: Amidin 28.3 3E+02 0.0065 24.4 7.7 173 36-209 35-242 (281)
35 PRK05581 ribulose-phosphate 3- 28.3 3.7E+02 0.008 22.7 9.3 113 33-176 17-131 (220)
36 CHL00073 chlN photochlorophyll 28.2 57 0.0012 32.5 3.2 95 123-244 207-305 (457)
37 PF08922 DUF1905: Domain of un 28.0 1.7E+02 0.0037 21.8 5.1 68 20-94 11-78 (80)
38 COG0309 HypE Hydrogenase matur 27.6 92 0.002 30.0 4.4 65 15-88 50-114 (339)
39 CHL00123 rps6 ribosomal protei 27.0 1.2E+02 0.0025 23.6 4.2 68 159-226 12-87 (97)
40 PLN02334 ribulose-phosphate 3- 25.0 4.6E+02 0.01 22.8 10.0 101 21-134 6-113 (229)
41 PRK10558 alpha-dehydro-beta-de 23.2 54 0.0012 29.8 1.9 105 46-151 71-184 (256)
42 TIGR01279 DPOR_bchN light-inde 23.2 2.2E+02 0.0048 27.3 6.2 81 124-226 168-251 (407)
43 TIGR03239 GarL 2-dehydro-3-deo 23.2 1E+02 0.0022 27.8 3.7 105 46-151 64-177 (249)
44 PTZ00191 60S ribosomal protein 22.8 1.4E+02 0.0029 25.5 4.1 45 115-181 65-110 (145)
45 COG2052 Uncharacterized protei 22.7 89 0.0019 24.2 2.7 62 104-168 10-72 (89)
46 COG0089 RplW Ribosomal protein 22.3 1.2E+02 0.0027 23.9 3.5 30 159-188 26-57 (94)
47 KOG0124 Polypyrimidine tract-b 21.9 93 0.002 30.7 3.3 36 113-149 214-249 (544)
48 TIGR02311 HpaI 2,4-dihydroxyhe 20.6 99 0.0021 27.9 3.1 104 46-151 64-178 (249)
No 1
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=1.7e-84 Score=580.87 Aligned_cols=245 Identities=72% Similarity=1.150 Sum_probs=241.1
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 1 m~~r~~~~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (247)
T PTZ00136 1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQE 80 (247)
T ss_pred CceeEEecCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++||++++|+++++|++|+||||+|||++|||||++++++++.|+|+|||||+|++|||+++|||++++||+|+|
T Consensus 81 l~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tIag~~lVGs~~v~Nn~G~L 160 (247)
T PTZ00136 81 LQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGL 160 (247)
T ss_pred HHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEecCCceEEEEEEEeCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc--CCCchhHHHHHH
Q 025981 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE--AQPSALVDEMRK 238 (245)
Q Consensus 161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~--~~~~~~~~~~~~ 238 (245)
|||+++++|+++|+++||||+.+||+|+|+++||||++|||||++|||+||++|+++||++||++. .++..+..+||+
T Consensus 161 VhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (247)
T PTZ00136 161 VHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRS 240 (247)
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccCCchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 556778899999
Q ss_pred HhhhhcC
Q 025981 239 SLIDSYV 245 (245)
Q Consensus 239 ~~~~~~~ 245 (245)
+|||+|.
T Consensus 241 ~~~~~~~ 247 (247)
T PTZ00136 241 SLIDTLA 247 (247)
T ss_pred HHHHhhC
Confidence 9999974
No 2
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-79 Score=534.35 Aligned_cols=220 Identities=49% Similarity=0.704 Sum_probs=217.7
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+|+|+ +|+++|+|+||++||+|++|||||+|||+.++|+|
T Consensus 2 mi~r~~~~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~E 79 (222)
T COG1976 2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEE 79 (222)
T ss_pred ceEEEEecCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHH
Confidence 8899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||+ +.+++|.++++|+||+||.|+||||+||+||++++++.|.|+|+|||||+|++|||.++|||+++.||||+|
T Consensus 80 l~~l~~--~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtIag~~tVGsa~v~tnkG~L 157 (222)
T COG1976 80 LRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGL 157 (222)
T ss_pred HHhhcc--cCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEecCccceeeEEEEecCcce
Confidence 999998 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v 224 (245)
|||.++++|+++|+++|+|++..||+|+|+++||+|+||||||++||.+||+|||.|||++|++
T Consensus 158 vhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rIe~aLg~ 221 (222)
T COG1976 158 VHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221 (222)
T ss_pred eCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999984
No 3
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-79 Score=526.35 Aligned_cols=245 Identities=80% Similarity=1.222 Sum_probs=242.8
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+||++||+|+++||.||||..+.+++||+.||++|++.+|+++|+|+|+++||+||+||+||||||+.+||||
T Consensus 1 Ma~R~qfens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqE 80 (245)
T KOG3185|consen 1 MALRVQFENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQE 80 (245)
T ss_pred CceeeeecCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
|+|||++|||.+.++|+++|++|+||.|+|||++||||||+++++++.|+|+|+|||+|.+||+.++|||||+.+|+|++
T Consensus 81 lqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqtia~n~LvGsyc~lsnqG~l 160 (245)
T KOG3185|consen 81 LQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIAQNSLVGSYCALSNQGGL 160 (245)
T ss_pred HHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecccCCceeeeeEEEcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHh
Q 025981 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240 (245)
Q Consensus 161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (245)
|||.++-|++++|+++|+||+..||+|+|+..+|+|+++|||-+++|.+||..|+.+||.+|++.+++|+.+..+||++|
T Consensus 161 Vhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiFkL~~aqp~~i~~~~R~~l 240 (245)
T KOG3185|consen 161 VHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIFKLNEAQPSSISSELRDTL 240 (245)
T ss_pred ecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHHhhcccCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 025981 241 IDSYV 245 (245)
Q Consensus 241 ~~~~~ 245 (245)
||++.
T Consensus 241 id~~~ 245 (245)
T KOG3185|consen 241 IDSYV 245 (245)
T ss_pred HHhcC
Confidence 99874
No 4
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=100.00 E-value=4.7e-74 Score=499.95 Aligned_cols=199 Identities=53% Similarity=0.811 Sum_probs=173.2
Q ss_pred eeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHH
Q 025981 3 TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~ 82 (245)
+|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||||||++++|+|++
T Consensus 1 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~ 78 (199)
T PF01912_consen 1 QRLSFYGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELE 78 (199)
T ss_dssp -EE-BTTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHH
T ss_pred CeEEEeCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHH
Confidence 58999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 025981 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+||+++| +++|+++++|+||+||+|+|||++|+|||+++++++|.|+|+|||||+|++||+.++|||++|+||+|+|||
T Consensus 79 ~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v~tn~G~Lvh 157 (199)
T PF01912_consen 79 HLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAVATNKGGLVH 157 (199)
T ss_dssp HHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEEE-SSEEEE-
T ss_pred HHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEecCcccceeeEEEeCcEEEEC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceE
Q 025981 163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTA 204 (245)
Q Consensus 163 p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~ga 204 (245)
|+++++|+++|+++|+||+.+||||+|+++||+|++||||||
T Consensus 158 P~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~ 199 (199)
T PF01912_consen 158 PDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA 199 (199)
T ss_dssp TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred CCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence 999999999999999999999999999999999999999997
No 5
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=4.3e-65 Score=450.85 Aligned_cols=222 Identities=42% Similarity=0.612 Sum_probs=218.9
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||+|+++||+|||+|++++++.++.|++.|+ +++++++|+||+++|+|++||+||+|+|+.++++|
T Consensus 1 ~i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e 78 (222)
T PRK04046 1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEE 78 (222)
T ss_pred CcEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHH
Confidence 8999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++|++.| +++|.+++.+++++||++++||++|++||+++++.++.|+|+|||+|.+.+|++.++||+++++||+|+|
T Consensus 79 ~~~l~e~L--~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ivaNd~G~l 156 (222)
T PRK04046 79 LELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGL 156 (222)
T ss_pred HHHHHHhc--CceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeEEEEeCCEEE
Confidence 99999997 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~ 226 (245)
|||+++++|+++|++.|+||+.+||+|+|.++||||++|||||++|||+||++|+++||++||+.+
T Consensus 157 v~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt~~El~~ie~~l~~~~ 222 (222)
T PRK04046 157 VHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222 (222)
T ss_pred ECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999853
No 6
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=7e-65 Score=449.08 Aligned_cols=219 Identities=63% Similarity=0.945 Sum_probs=211.5
Q ss_pred eeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHH
Q 025981 3 TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~ 82 (245)
+|++|+|+|+||+|+++||+|||+|++.++++.+.|+|+|+ +++++++|+||++||+|++||++|+|||+.++|+|++
T Consensus 2 ~~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~ 79 (220)
T cd00527 2 IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQ 79 (220)
T ss_pred eeEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHH
Confidence 69999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 025981 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+||+.|+.++.+.+...+.+++||++++||++||+||.++++.++.|+|+|+|+|++.+|++.+.+|+++++||+|+|||
T Consensus 80 ~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~Lvh 159 (220)
T cd00527 80 HIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVH 159 (220)
T ss_pred HHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEEC
Confidence 99999876666655555555999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhC
Q 025981 163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFK 223 (245)
Q Consensus 163 p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~ 223 (245)
|+++++|++.|+++||||+.+||+|+|.++|||+++|||||++|||+||++|+++||++||
T Consensus 160 P~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~El~~ie~~l~ 220 (220)
T cd00527 160 PKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220 (220)
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 7
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=8.5e-63 Score=434.49 Aligned_cols=215 Identities=56% Similarity=0.887 Sum_probs=211.7
Q ss_pred eeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHH
Q 025981 4 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQH 83 (245)
Q Consensus 4 r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~ 83 (245)
|++|+|||+||+|+++||+|||+|++.++++.+.|+|+|+ +++++++|+||++||+|+++|++|+|||+..++++++.
T Consensus 1 ~~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~ 78 (215)
T TIGR00323 1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDS 78 (215)
T ss_pred CeeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHh
Confidence 6899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCC
Q 025981 84 LRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHP 163 (245)
Q Consensus 84 l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p 163 (245)
|++. ++|.+++++.+++||++++||++|++||.++++.++.|+|.|||+|++.+|++..++|+++++||+|+||||
T Consensus 79 l~e~----l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP 154 (215)
T TIGR00323 79 LPDS----LKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHP 154 (215)
T ss_pred hHhh----cCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEEEECC
Confidence 9986 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981 164 HTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 164 ~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v 224 (245)
+++++|++.|+|+|||++.+||+|+|.++|||+++|||||++|||+||++|+++||++||+
T Consensus 155 ~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~El~~ie~~l~~ 215 (215)
T TIGR00323 155 QTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPELSIIEEALGL 215 (215)
T ss_pred CCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 8
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=7.5e-61 Score=418.09 Aligned_cols=200 Identities=70% Similarity=1.064 Sum_probs=197.7
Q ss_pred eeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHH
Q 025981 3 TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQ 82 (245)
Q Consensus 3 ~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~ 82 (245)
.|++|+|||+||+|+++||+|||+|++.+++.++.|++.|+ +++++|+|++++++|+|++||+||+|||+.++|+|++
T Consensus 1 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~ 78 (200)
T smart00654 1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQ 78 (200)
T ss_pred CeEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHH
Confidence 38999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeC
Q 025981 83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVH 162 (245)
Q Consensus 83 ~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~ 162 (245)
+|+++|+++++|.+++.+++|+||+++|||++||+||+++++.+|.|+|+||||++++||+|.++|||.+++||+|+|||
T Consensus 79 ~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi~G~~~VGs~~VannkG~lv~ 158 (200)
T smart00654 79 HLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVH 158 (200)
T ss_pred HHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEecCcccceEEEEEECCEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceE
Q 025981 163 PHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTA 204 (245)
Q Consensus 163 p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~ga 204 (245)
|+++++|+++|+++|++|+..||||+|+++||+|++||||||
T Consensus 159 ~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~ 200 (200)
T smart00654 159 PDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA 200 (200)
T ss_pred CCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence 999999999999999999999999999999999999999996
No 9
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=1.1e-45 Score=322.79 Aligned_cols=173 Identities=20% Similarity=0.220 Sum_probs=167.6
Q ss_pred EEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHH
Q 025981 50 KTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALTHTDLDRETEEM 128 (245)
Q Consensus 50 ~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~ 128 (245)
+++|+||++||+|+++|++|+|||+.++++|+++|++.|+ ++|.++. .+++++||++++||++||+||.++++..+.
T Consensus 2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~ 79 (200)
T smart00654 2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQH 79 (200)
T ss_pred eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHH
Confidence 6899999999999999999999999999999999999986 7787766 999999999999999999999999999999
Q ss_pred HHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEE
Q 025981 129 IADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFC 206 (245)
Q Consensus 129 I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galv 206 (245)
|++.|+ ++|.+.+.. .+.+|+++++||+|+|+||+++++|+++|+++||||+.+||+ +|.++|||+++|||||++|
T Consensus 80 i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv 157 (200)
T smart00654 80 LRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLV 157 (200)
T ss_pred HHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEE
Confidence 999997 999998887 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhCCcc
Q 025981 207 GSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 207 g~~tT~~El~~Ie~~l~v~~ 226 (245)
||+||++|+++||++||++.
T Consensus 158 ~~~tt~~El~~ie~~l~v~~ 177 (200)
T smart00654 158 HPDTSEEELKELSELLGVPL 177 (200)
T ss_pred CCCCCHHHHHHHHHHhCCCc
Confidence 99999999999999999985
No 10
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=2.5e-45 Score=324.54 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=168.1
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+||++||+|+++|++|+|+|+..+++..+.|++.|+.+++++++++.+| ++|.|++||+||+|||+.++++|
T Consensus 44 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e 122 (220)
T cd00527 44 PVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEA 122 (220)
T ss_pred cEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCe
Q 025981 81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTI-AGNILVGSYCSFSNRG 158 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G 158 (245)
+++|++.|+. +|.+.+ .+.+++||+++|||++||+||+++++.++.|+|+||||+.++|+ +|+++|||.+++||+|
T Consensus 123 ~~~i~~~L~v--~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG 200 (220)
T cd00527 123 EEIIEDVLGV--EVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKG 200 (220)
T ss_pred HHHHHHhcCC--cEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCE
Confidence 9999999865 455544 56999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eeeCCCCCHHHHHHHhhhcC
Q 025981 159 GLVHPHTSIEDLDELSTLLQ 178 (245)
Q Consensus 159 ~LV~p~~~~eEl~~l~~~l~ 178 (245)
+||||+++++|+++|+++|+
T Consensus 201 ~lvg~~tt~~El~~ie~~l~ 220 (220)
T cd00527 201 AVVGSDTTGPELSRIEDALG 220 (220)
T ss_pred EEECCCCCHHHHHHHHHHhC
Confidence 99999999999999999986
No 11
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=6.2e-45 Score=321.06 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=165.9
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||+|+++||+|||+|++.+++..+.|+|.|+ +++++|+| +++|.|++||+||+|||+.++++|
T Consensus 42 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e 116 (215)
T TIGR00323 42 PVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDT 116 (215)
T ss_pred cEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHH
Confidence 7899999999999999999999999999999999999999999 99999999 999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCe
Q 025981 81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTI-AGNILVGSYCSFSNRG 158 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G 158 (245)
+++|++.|+ ++|.+++ .+.+++|+++++||++|||||+++++.++.|+|+||||+.++|| +|.++|||.+++||+|
T Consensus 117 ~~~i~~~L~--v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G 194 (215)
T TIGR00323 117 EELISDVLG--VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKG 194 (215)
T ss_pred HHHHHHhcC--CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCE
Confidence 999999986 5666666 89999999999999999999999999999999999999999999 5999999999999999
Q ss_pred eeeCCCCCHHHHHHHhhhcCc
Q 025981 159 GLVHPHTSIEDLDELSTLLQV 179 (245)
Q Consensus 159 ~LV~p~~~~eEl~~l~~~l~V 179 (245)
+||||+++++|+++|+++|+.
T Consensus 195 ~lv~~~tt~~El~~ie~~l~~ 215 (215)
T TIGR00323 195 AVVGLDTTGPELSIIEEALGL 215 (215)
T ss_pred EEECCCCCHHHHHHHHHHhCc
Confidence 999999999999999999873
No 12
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=1.2e-43 Score=314.11 Aligned_cols=175 Identities=23% Similarity=0.296 Sum_probs=169.1
Q ss_pred EEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEE-EEecCCCCceeeEEEeeCceEEEecCCChhHH
Q 025981 48 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVV-QRIEERLSALGNCIACNDHVALTHTDLDRETE 126 (245)
Q Consensus 48 vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v-~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~ 126 (245)
+++++|+||+.||+++++|++++|+|+.++++|+++|++.|. +++ +..-.+.+++|+|+++||+++++||+++++..
T Consensus 2 i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~ 79 (222)
T PRK04046 2 IRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEEL 79 (222)
T ss_pred cEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHH
Confidence 689999999999999999999999999999999999999984 555 44568999999999999999999999999999
Q ss_pred HHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEE
Q 025981 127 EMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFC 206 (245)
Q Consensus 127 ~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galv 206 (245)
+.|+|.|||+|+++++ +++++|+++++||+|+|+||.++++|++.|++.|||++.++|+ .|.+++||+++||||||+|
T Consensus 80 ~~l~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv 157 (222)
T PRK04046 80 ELLKEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLV 157 (222)
T ss_pred HHHHHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEE
Confidence 9999999999999999 9999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhCCcc
Q 025981 207 GSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 207 g~~tT~~El~~Ie~~l~v~~ 226 (245)
||++|++|+++|+++||++.
T Consensus 158 ~p~~t~~ei~~i~~~l~v~~ 177 (222)
T PRK04046 158 HPDATDEELKFLEDLFKVEV 177 (222)
T ss_pred CCCCCHHHHHHHHHHhCCce
Confidence 99999999999999999985
No 13
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=246.42 Aligned_cols=127 Identities=14% Similarity=0.250 Sum_probs=124.1
Q ss_pred eCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhh
Q 025981 8 ENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNS 87 (245)
Q Consensus 8 ~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 87 (245)
..-+.||+|+++||+|||+||++++++.+.|+++|+ ||+++++|+|+++||++++|
T Consensus 99 ~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~--VeVi~~tIag~~lVGs~~v~---------------------- 154 (247)
T PTZ00136 99 ERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLG--VEVFRTTIAGNVLVGTYCVF---------------------- 154 (247)
T ss_pred CccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCCceEEEEEEE----------------------
Confidence 456899999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec-CceeeeeEEEEcCCeeeeCCCCC
Q 025981 88 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIA-GNILVGSYCSFSNRGGLVHPHTS 166 (245)
Q Consensus 88 l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~LV~p~~~ 166 (245)
||++|||||+++++..+.|+|+||||++++||+ |+++|||.+++||+|++|||+++
T Consensus 155 -----------------------Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT 211 (247)
T PTZ00136 155 -----------------------TNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTT 211 (247)
T ss_pred -----------------------eCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHHHHhhhcCcce
Q 025981 167 IEDLDELSTLLQVPL 181 (245)
Q Consensus 167 ~eEl~~l~~~l~V~v 181 (245)
++|+++|+++|+++.
T Consensus 212 ~~El~~Ie~~l~v~~ 226 (247)
T PTZ00136 212 ATEISVIERIFKLRR 226 (247)
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999987
No 14
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=99.97 E-value=5.3e-31 Score=229.92 Aligned_cols=127 Identities=27% Similarity=0.414 Sum_probs=109.5
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe--------------------
Q 025981 99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG-------------------- 158 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------------------- 158 (245)
.+++++|+|+++||++||+||+++++..+.|++.|+||+++++|+|+++||+|+++|+||
T Consensus 6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~ 85 (199)
T PF01912_consen 6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP 85 (199)
T ss_dssp TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence 588999999999999999999999999999999999999999999999999999997777
Q ss_pred ------------------------eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHH
Q 025981 159 ------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATE 214 (245)
Q Consensus 159 ------------------------~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~E 214 (245)
+++||+.++++.+.|+|+|||++.++|+ +|.+.|||..++||+|++|||++|++|
T Consensus 86 ~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~ti-a~~~~VGs~~v~tn~G~LvhP~~s~eE 164 (199)
T PF01912_consen 86 DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTI-AGIKTVGSAAVATNKGGLVHPDASEEE 164 (199)
T ss_dssp TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--B-TTBS-CCCSEEE-SSEEEE-TT--HHH
T ss_pred CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEe-cCcccceeeEEEeCcEEEECCCCCHHH
Confidence 8888888888888999999999999998 999999999999999999999999999
Q ss_pred HHHHHHhhCCcc
Q 025981 215 LSVIESVFKLRE 226 (245)
Q Consensus 215 l~~Ie~~l~v~~ 226 (245)
+++++++|+++.
T Consensus 165 l~~l~~~l~v~~ 176 (199)
T PF01912_consen 165 LEELEELLGVPV 176 (199)
T ss_dssp HHHHHHHHTSSE
T ss_pred HHHHHHHhCCce
Confidence 999999999986
No 15
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.7e-29 Score=220.02 Aligned_cols=127 Identities=29% Similarity=0.431 Sum_probs=123.6
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe--------------------
Q 025981 99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG-------------------- 158 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------------------- 158 (245)
++.+.||+|+.++|+||++||+++++.++.|+|+|+|||++++|+|+++||+++++|+||
T Consensus 9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~ 88 (222)
T COG1976 9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG 88 (222)
T ss_pred cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence 689999999999999999999999999999999999999999999999999999997666
Q ss_pred -----------------------eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHH
Q 025981 159 -----------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATEL 215 (245)
Q Consensus 159 -----------------------~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El 215 (245)
+|+||+.+++..|.++|.|||++.+||+ +|.+.|||..++|++|+||||+||++|+
T Consensus 89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El 167 (222)
T COG1976 89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL 167 (222)
T ss_pred ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhCCcc
Q 025981 216 SVIESVFKLRE 226 (245)
Q Consensus 216 ~~Ie~~l~v~~ 226 (245)
+++++.|||+.
T Consensus 168 e~Lse~f~V~v 178 (222)
T COG1976 168 EELSELFGVPV 178 (222)
T ss_pred HHHHHHhCeeE
Confidence 99999999986
No 16
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=9.9e-19 Score=152.11 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=125.6
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 025981 99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 176 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~ 176 (245)
++++.+|.|...++.||+|.-.-++......+..|+ +|++.++|+|++++|++|++|.+|+|||..++|+|++.|++.
T Consensus 8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS 87 (245)
T KOG3185|consen 8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS 87 (245)
T ss_pred cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence 678999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981 177 LQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 177 l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~ 226 (245)
|.-++..-+|.....++|+.+.|||+-|+|||+...+.-+.|.|+||++.
T Consensus 88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeV 137 (245)
T KOG3185|consen 88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEV 137 (245)
T ss_pred CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheee
Confidence 99999999999999999999999999999999999999999999999987
No 17
>PRK04323 hypothetical protein; Provisional
Probab=50.41 E-value=82 Score=24.79 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=46.2
Q ss_pred eeeEEEeeCceEEEecCCChhHHHHHHhhhC-CceEEEeecCceeeeeEEEEcCCe-eeeCCCCCHHHHHHHh
Q 025981 104 LGNCIACNDHVALTHTDLDRETEEMIADVLG-VEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTSIEDLDELS 174 (245)
Q Consensus 104 iGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg-VeV~~~tIag~~lVGs~~v~Nn~G-~LV~p~~~~eEl~~l~ 174 (245)
.||++.+++=.|+++|+ |....+.+++.=. =.++..|-+ +-.=|+.+ ++.| .+++|..++.=.+++.
T Consensus 10 fgn~V~~~rIIAIv~~~-Sap~Kr~~~~ak~~g~lidaT~G--rktrsvII-tds~hV~LSai~~eTl~~R~~ 78 (91)
T PRK04323 10 FGNIVSANRIIAIVSPE-SAPIKRIIQEARERGMLIDATYG--RKTRAVII-TDSGHVILSAIQPETIAHRLS 78 (91)
T ss_pred CCcEEEcccEEEEECCC-cHHHHHHHHHHHHcCeEEeccCC--CceeEEEE-ecCCeEEEeeCCHHHHHHHHh
Confidence 37899999999999999 6666666665442 346666653 22334444 5555 9999988887666664
No 18
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.34 E-value=1.1e+02 Score=29.72 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=60.0
Q ss_pred hHHHHHHhhhCCceEEE----eecCceeeeeEEEEc-------------CCe-eeeCCCCCHHHHHHHhhhcCcceeEEe
Q 025981 124 ETEEMIADVLGVEVFRQ----TIAGNILVGSYCSFS-------------NRG-GLVHPHTSIEDLDELSTLLQVPLVAGT 185 (245)
Q Consensus 124 ~~~~~I~d~LgVeV~~~----tIag~~lVGs~~v~N-------------n~G-~LV~p~~~~eEl~~l~~~l~V~v~~gt 185 (245)
+.++.+=+.+|+++... ...+.++.|.+.... ..- ++++|.....--+.|++-+|+|....
T Consensus 177 ~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~~~~- 255 (435)
T cd01974 177 REIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETL- 255 (435)
T ss_pred HHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHHHhhccCcEEEEECccccHHHHHHHHHHhCCCeeec-
Confidence 34455555689998642 122333333333322 112 45678777777788898889996332
Q ss_pred eccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHhhhh
Q 025981 186 VNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 243 (245)
Q Consensus 186 vN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~ 243 (245)
. ..+|.+-|..-+..|.+.||.+. ....++.|+.+.+.
T Consensus 256 ---~--------------~p~G~~~t~~~l~~l~~~~g~~~---~~~i~~er~~~~~~ 293 (435)
T cd01974 256 ---N--------------MPIGVAATDEFLMALSELTGKPI---PEELEEERGRLVDA 293 (435)
T ss_pred ---C--------------CCcChHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHH
Confidence 1 24588889999999999999864 22234444444443
No 19
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=42.31 E-value=64 Score=24.68 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=48.5
Q ss_pred eeeeeCCCceeeEEEecC-cEEEEeCCC---ChhHHHHHHHhhcC-------------CCcEEEEeecCceeEeEEeeee
Q 025981 4 RLMFENSCEVGVFSKLTN-AYCLVAIGG---SESFYSTFEAELAD-------------VFPVVKTSIGGTRIIGRLCAGN 66 (245)
Q Consensus 4 r~~~~gs~~IGvf~~~t~-~~~lvp~~~---~~~~~~~i~~~L~~-------------~v~vv~t~I~gs~lvG~l~~GN 66 (245)
++..+||.--|.+..-.| |+++..+.. ..+..+.+++.|.. .||+++.....+.+-==++++|
T Consensus 21 ~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis~~~ 100 (114)
T cd05402 21 KLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDISFNN 100 (114)
T ss_pred EEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCCceeeEEeccCCCCEEEEEEcCCCeEEEEEccc
Confidence 678999999998887665 667776653 45677777776642 2577777777677777777788
Q ss_pred CCeEE
Q 025981 67 KNGLL 71 (245)
Q Consensus 67 ~nGll 71 (245)
.+|+.
T Consensus 101 ~~g~~ 105 (114)
T cd05402 101 LNGIR 105 (114)
T ss_pred chHHH
Confidence 77754
No 20
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.67 E-value=57 Score=29.75 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=75.5
Q ss_pred eeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCC-eEEecCC--CCHHHHHHHHhhC--
Q 025981 14 GVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKN-GLLLPHT--TTDQELQHLRNSL-- 88 (245)
Q Consensus 14 Gvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~n-Gllvp~~--~~d~El~~l~~~l-- 88 (245)
=+|..++-+ .+.+++.+++...++++.-+ +|++-|+-| .+-|-=..|=++ -+|-|++ ++..|.+.|++.-
T Consensus 71 I~Y~CtsgS-~i~G~~~d~ei~~~ie~~~~--v~vvTts~A--vv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfe 145 (238)
T COG3473 71 IVYGCTSGS-LIGGPGYDKEIAQRIEEAKG--VPVVTTSTA--VVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFE 145 (238)
T ss_pred EEEecccee-eecCCchhHHHHHHHHhccC--CceeechHH--HHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeE
Confidence 356655554 46688889999999999998 999988533 222222223233 3445554 4667888888762
Q ss_pred ---------CCCeEEEEec-----------CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee
Q 025981 89 ---------PDQVVVQRIE-----------ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTI 142 (245)
Q Consensus 89 ---------~~~v~v~~l~-----------~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI 142 (245)
+|++++.|++ ..-.+=|.||.|++--+ =+.++.+++.+|+||+-..-
T Consensus 146 iv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiSCTnlRt-------~eii~~lE~~~G~PVvsSN~ 212 (238)
T COG3473 146 IVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFISCTNLRT-------FEIIEKLERDTGVPVVSSNQ 212 (238)
T ss_pred EEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEEEeecccc-------HHHHHHHHHHhCCceeeccH
Confidence 3444454444 12334577888887433 46789999999999987543
No 21
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.08 E-value=72 Score=24.53 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=34.0
Q ss_pred EEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcce
Q 025981 115 ALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPL 181 (245)
Q Consensus 115 alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~-~l~~~l~V~v 181 (245)
.|.+|-+++++...+++. |-..+.|+|+++..|++ .++.+|+|++
T Consensus 4 iI~~PviTEK~~~~~e~~----------------------n~y~F~V~~~anK~eIK~AvE~lf~VkV 49 (84)
T PRK14548 4 IIKYPLVTEKAMNLIEKE----------------------NKLTFIVDRRATKPDIKRAVEELFDVKV 49 (84)
T ss_pred chhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCce
Confidence 356677777776654432 45668999999999998 6788899997
No 22
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=36.82 E-value=2.5e+02 Score=24.94 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred ecCCCCHHHHHHHHhhCCCC------eEEEEecC--CCCceeeEEEeeCceEEEecCCChh-HHHHHHhhhC---CceEE
Q 025981 72 LPHTTTDQELQHLRNSLPDQ------VVVQRIEE--RLSALGNCIACNDHVALTHTDLDRE-TEEMIADVLG---VEVFR 139 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~------v~v~~l~~--~~~aiGn~i~~ND~~alV~p~l~~~-~~~~I~d~Lg---VeV~~ 139 (245)
+...++.+=++.|++.++.. +.+.+... -+--=-.+-...++.++++|++-++ ..+.+.+.|+ .+++.
T Consensus 137 ~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~iI~ 216 (281)
T PF02274_consen 137 VGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPDAFDPEEEEELEQALKERGFEIIE 216 (281)
T ss_dssp ESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECCHHCTHHHHHHHHHHSSSTCEEEE
T ss_pred ecCCCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCcccchHHHHHHHHHhcccCcEEEE
Confidence 67788889999999999877 22222111 1111113334456777777776544 4777888877 67888
Q ss_pred EeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcce
Q 025981 140 QTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPL 181 (245)
Q Consensus 140 ~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v 181 (245)
.+-.....-|+.++.=+.|-++.+.....-.+.|++. |+.+
T Consensus 217 v~~~e~~~~~~N~l~l~~~~vi~~~~~~~~~~~L~~~-G~~v 257 (281)
T PF02274_consen 217 VPEEEQWNFACNVLSLGPGKVIAYASNPRTNEQLEKA-GIEV 257 (281)
T ss_dssp ESSCSCSGGGGS-EEECTTEEEEETTHHHHHHHHHHT-T-EE
T ss_pred eccchhhhccCCEEEecCCEEEECCCCHHHHHHHHhc-CCeE
Confidence 8855544444433333666667676667767777765 6665
No 23
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=34.67 E-value=2.1e+02 Score=28.28 Aligned_cols=118 Identities=13% Similarity=0.144 Sum_probs=63.6
Q ss_pred EecCcEEEEeCCC--Ch---hHHHHHHHhhcCCCcEEEE---eecCceeEeEEeeeeCCeEEecCCCCHHHH-HHHHhhC
Q 025981 18 KLTNAYCLVAIGG--SE---SFYSTFEAELADVFPVVKT---SIGGTRIIGRLCAGNKNGLLLPHTTTDQEL-QHLRNSL 88 (245)
Q Consensus 18 ~~t~~~~lvp~~~--~~---~~~~~i~~~L~~~v~vv~t---~I~gs~lvG~l~~GN~nGllvp~~~~d~El-~~l~~~l 88 (245)
.+-||+.|+|.-. .+ +.-..+.+.++-.+|++.+ ++.+..+.=.+...---|+|= ...+.+|. +.+++
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~-~~~~~e~~~~~I~~-- 85 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIH-KNMSIEEQAEEVRK-- 85 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEec-CCCCHHHHHHHHHH--
Confidence 6779999999633 22 2234566676655899986 777777766666556666654 44444444 44442
Q ss_pred CCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEE
Q 025981 89 PDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYC 152 (245)
Q Consensus 89 ~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~ 152 (245)
|+..++.+. .+...++|+.+-+....+-..-+...+...=.+.+++|.+.
T Consensus 86 -----vk~~~dim~---------~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt 135 (486)
T PRK05567 86 -----VKRSESGVV---------TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIIT 135 (486)
T ss_pred -----hhhhhhccc---------CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEE
Confidence 333333322 45556677665443332222233332222223456666665
No 24
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=34.17 E-value=1.1e+02 Score=24.10 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=46.5
Q ss_pred CHHHHHHHhhhcCcceeEEeec-----cCcceeeeEEE---------EcCceEEEcCCCCHHHHHHHHHhhCCccCCC
Q 025981 166 SIEDLDELSTLLQVPLVAGTVN-----RGSEVIAAGLT---------VNDWTAFCGSDTTATELSVIESVFKLREAQP 229 (245)
Q Consensus 166 ~~eEl~~l~~~l~V~v~~gtvN-----~G~~~VGsgiv---------aNd~galvg~~tT~~El~~Ie~~l~v~~~~~ 229 (245)
+-+|++.|.+..|.++....+- ....++|+|=+ .+-.-+++..+.|......+|+.||+++..-
T Consensus 9 ~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~DR 86 (95)
T PF13167_consen 9 SLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVIDR 86 (95)
T ss_pred HHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeeecc
Confidence 3468888888899887543322 23468888843 3445678888999999999999999987443
No 25
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=34.17 E-value=3.2e+02 Score=26.25 Aligned_cols=60 Identities=23% Similarity=0.422 Sum_probs=42.2
Q ss_pred ecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe-------eee----CCCCCHHHHH-HHhhhcCcc
Q 025981 118 HTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG-------GLV----HPHTSIEDLD-ELSTLLQVP 180 (245)
Q Consensus 118 ~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------~LV----~p~~~~eEl~-~l~~~l~V~ 180 (245)
+.+.+...-+.|++.+|++.++. +..+=|=....|-+| ||+ +|..|++|++ +|++.||+.
T Consensus 122 ~~~~D~~v~~~ia~~~g~~~~~~---~lvlEGG~ie~dG~GtlltTe~clln~nRNP~ls~~eIe~~Lk~~LGv~ 193 (357)
T TIGR03380 122 PWDKDDLVARKVCELEGIDRYRA---DFVLEGGSIHVDGEGTLLTTEECLLSEGRNPHLTKEQIEEKLKDYLGVE 193 (357)
T ss_pred CcchHHHHHHHHHHHcCCCcccc---CeEEeCCcEEECCCeeEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCC
Confidence 45677788899999999998885 223333333445555 554 5677888886 788889988
No 26
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=33.46 E-value=62 Score=27.88 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=26.3
Q ss_pred eeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEe
Q 025981 105 GNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQT 141 (245)
Q Consensus 105 Gn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~t 141 (245)
..+|+.|+.+.-- |...+.++.+++.||++|++..
T Consensus 79 ~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 79 RVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred eEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeC
Confidence 3566666654332 5667889999999999999876
No 27
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=31.70 E-value=1.2e+02 Score=30.43 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=45.8
Q ss_pred eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHH
Q 025981 159 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRK 238 (245)
Q Consensus 159 ~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~ 238 (245)
++++|.....-.+.|++-+|+|. +..+.| +|.+-|+.-+..|.+.+|.+. +..+ .+.|.
T Consensus 290 ivl~~~~~~~~a~~l~~~~g~p~----~~~~~P--------------iGi~~Td~fL~~la~~~g~~i--p~~i-~~eR~ 348 (515)
T TIGR01286 290 VLLQPYTLRKTKEYIEKTWKQET----PKLNIP--------------LGVKGTDEFLMKVSEISGQPI--PAEL-TKERG 348 (515)
T ss_pred EEEchhhhHHHHHHHHHHhCCCc----ccCCCC--------------ccHHHHHHHHHHHHHHHCCCC--CHHH-HHHHH
Confidence 55677777777778888889986 223334 688899999999999999865 2223 45555
Q ss_pred Hhhhhc
Q 025981 239 SLIDSY 244 (245)
Q Consensus 239 ~~~~~~ 244 (245)
.++|.|
T Consensus 349 rl~dam 354 (515)
T TIGR01286 349 RLVDAM 354 (515)
T ss_pred HHHHHH
Confidence 566554
No 28
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=31.03 E-value=2.7e+02 Score=26.84 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCHHHHHHHHhhCC-CCeEEEEecCCCCc---eeeEEEeeCceE--------------EEecCCChhHHHHHHhhhCCce
Q 025981 76 TTDQELQHLRNSLP-DQVVVQRIEERLSA---LGNCIACNDHVA--------------LTHTDLDRETEEMIADVLGVEV 137 (245)
Q Consensus 76 ~~d~El~~l~~~l~-~~v~v~~l~~~~~a---iGn~i~~ND~~a--------------lV~p~l~~~~~~~I~d~LgVeV 137 (245)
+.+++++.-|..|+ .+|.+.+++.+.+= -|-.++.||++- ..+-+.++...+++.+.++...
T Consensus 66 V~~~~~~~a~a~l~~~~V~~~~i~~nDtW~RDtGP~~~i~~~g~~~a~d~~FNaWGGlkf~~e~Dd~Va~k~~~~~~k~~ 145 (346)
T COG2957 66 VPDDDLEDARARLDDANVEIVRIDTNDTWLRDTGPTIVINDKGDLRAVDFGFNAWGGLKFPWELDDQVASKLAELLFKAP 145 (346)
T ss_pred echHHHHHHHhhcCCCceEEEEccCCCcHhhccCCcEEecCCCcEEEecceeccccccccccccchHHHHHHHHhhccCc
Confidence 35678888888888 45888888765543 365566666542 5667788999999999999554
Q ss_pred EEEe-----ecCceeeeeEEEEcCCeeee----CCCCCHHHHH-HHhhhcCcce
Q 025981 138 FRQT-----IAGNILVGSYCSFSNRGGLV----HPHTSIEDLD-ELSTLLQVPL 181 (245)
Q Consensus 138 ~~~t-----Iag~~lVGs~~v~Nn~G~LV----~p~~~~eEl~-~l~~~l~V~v 181 (245)
.++. =+....=|-=.+.+..-||+ +|..++++++ .|++.||++-
T Consensus 146 ~~~~~fiLEGGsi~~dG~Gt~LTT~~CLLn~nRNPhl~~~~ie~~L~e~Lg~kk 199 (346)
T COG2957 146 LKTDPFILEGGSIHSDGEGTLLTTEQCLLNDNRNPHLNQEGIENKLKEYLGAKK 199 (346)
T ss_pred cccCCeeeecCceeecCceeEEeehHhhcCCCCCCCcCHHHHHHHHHHHhCccE
Confidence 4321 12223345556667777888 7899999998 6888999883
No 29
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=30.38 E-value=56 Score=31.88 Aligned_cols=46 Identities=30% Similarity=0.532 Sum_probs=37.6
Q ss_pred eeeEEEecC------cEEEEeCCCChhHHHHHHHhhcCC-CcEEEEeecCcee
Q 025981 13 VGVFSKLTN------AYCLVAIGGSESFYSTFEAELADV-FPVVKTSIGGTRI 58 (245)
Q Consensus 13 IGvf~~~t~------~~~lvp~~~~~~~~~~i~~~L~~~-v~vv~t~I~gs~l 58 (245)
.|.+.++|. -++|+|++..++.++.++++|.+| .++..|.++|..+
T Consensus 325 ~gi~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~gf~v~~t~lGG~G~ 377 (397)
T KOG1511|consen 325 LGIHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESHGFEVFETELGGPGV 377 (397)
T ss_pred hCcceecccCCCCceEEEEECCCCchHHHHHHHHHHHhcCcceeeccCCCCce
Confidence 456666665 378999999999999999999866 7899999998643
No 30
>PLN02591 tryptophan synthase
Probab=30.09 E-value=1.5e+02 Score=26.98 Aligned_cols=111 Identities=22% Similarity=0.223 Sum_probs=65.0
Q ss_pred CCeEEecCCCCHHHHHHHHhhCC-CCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCc
Q 025981 67 KNGLLLPHTTTDQELQHLRNSLP-DQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGN 145 (245)
Q Consensus 67 ~nGllvp~~~~d~El~~l~~~l~-~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~ 145 (245)
=+|+|+|..-. +|.+.+++.+. .++ +.+.+++|..+++-.+.|.+.=. +-|
T Consensus 107 v~GviipDLP~-ee~~~~~~~~~~~gl-------------------~~I~lv~Ptt~~~ri~~ia~~~~-----gFI--- 158 (250)
T PLN02591 107 VHGLVVPDLPL-EETEALRAEAAKNGI-------------------ELVLLTTPTTPTERMKAIAEASE-----GFV--- 158 (250)
T ss_pred CCEEEeCCCCH-HHHHHHHHHHHHcCC-------------------eEEEEeCCCCCHHHHHHHHHhCC-----CcE---
Confidence 58999999876 55555554421 122 23568899999888888877621 111
Q ss_pred eeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCcc---eeeeEEEEcCceEEEcCCC
Q 025981 146 ILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSE---VIAAGLTVNDWTAFCGSDT 210 (245)
Q Consensus 146 ~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~---~VGsgivaNd~galvg~~t 210 (245)
-+|++..+--.+..+ |.-.++-++++++..++|+..|- |.. -+....-..-.|++||+..
T Consensus 159 Y~Vs~~GvTG~~~~~--~~~~~~~i~~vk~~~~~Pv~vGF---GI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 159 YLVSSTGVTGARASV--SGRVESLLQELKEVTDKPVAVGF---GISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred EEeeCCCCcCCCcCC--chhHHHHHHHHHhcCCCceEEeC---CCCCHHHHHHHHhcCCCEEEECHHH
Confidence 344444333333222 33345558899998899986543 333 2222222336788888754
No 31
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=30.08 E-value=1.7e+02 Score=27.06 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=108.3
Q ss_pred eCCCceeeEEEecCcEE------------EEeCCCC----hhHHHHHHHhhc-CCCcEEEEeecCceeEeEEeeeeCCeE
Q 025981 8 ENSCEVGVFSKLTNAYC------------LVAIGGS----ESFYSTFEAELA-DVFPVVKTSIGGTRIIGRLCAGNKNGL 70 (245)
Q Consensus 8 ~gs~~IGvf~~~t~~~~------------lvp~~~~----~~~~~~i~~~L~-~~v~vv~t~I~gs~lvG~l~~GN~nGl 70 (245)
.|-+.||.|..+.+-|+ ++--.-. +..+..++.... ..-|+|+-.++....|=.+.=-.-.++
T Consensus 14 ~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~g~~~~Ikq~LD~GAqtl 93 (255)
T COG3836 14 AGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPVGDPVMIKQLLDIGAQTL 93 (255)
T ss_pred CCCceEEeeecCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCCCCHHHHHHHHcccccee
Confidence 67889999999888664 3322222 344445555544 235799999998888877777778899
Q ss_pred EecCCCCHHHHHHHHhhC---CCCeE-EE---EecCCCCceeeEEE-eeCceEEEecCCChhHHHHHHhhhCCceEEEee
Q 025981 71 LLPHTTTDQELQHLRNSL---PDQVV-VQ---RIEERLSALGNCIA-CNDHVALTHTDLDRETEEMIADVLGVEVFRQTI 142 (245)
Q Consensus 71 lvp~~~~d~El~~l~~~l---~~~v~-v~---~l~~~~~aiGn~i~-~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI 142 (245)
|+|..-|-++-+++-+.. |.|+. |. ---++.+.+..|.. +||+.|++-.--+++-.+.+.+.+.||=+-+
T Consensus 94 liPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGVDg-- 171 (255)
T COG3836 94 LIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGVDG-- 171 (255)
T ss_pred eeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCCCe--
Confidence 999999999988886654 44411 11 01245556666665 9999999998888888888888887773321
Q ss_pred cCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhc
Q 025981 143 AGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL 177 (245)
Q Consensus 143 ag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l 177 (245)
-++|..=..-+.|.+-+|.-. +-.+.|+..+
T Consensus 172 ---vFiGPaDLaas~G~~gn~~hp-eV~~aI~~~~ 202 (255)
T COG3836 172 ---VFIGPADLAASLGHLGNPGHP-EVQAAIEHII 202 (255)
T ss_pred ---EEECHHHHHHHcCCCCCCCCH-HHHHHHHHHH
Confidence 244444455667777776543 3344555543
No 32
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=29.73 E-value=1.3e+02 Score=29.09 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=58.2
Q ss_pred hHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe-eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCc
Q 025981 124 ETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDW 202 (245)
Q Consensus 124 ~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~ 202 (245)
..++.+=+.+|++|....=++..+=-...+.+..- ++++|.....--+.|++-+|+|.... .
T Consensus 182 ~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~----~------------- 244 (426)
T cd01972 182 DEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKA----P------------- 244 (426)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEec----C-------------
Confidence 34555556689998754322232222222223333 44566655666677888888886322 1
Q ss_pred eEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHhhh
Q 025981 203 TAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLID 242 (245)
Q Consensus 203 galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~ 242 (245)
...|.+-|..-+..|.+.||.+. .-+...++.|+.+.+
T Consensus 245 -~P~G~~~T~~~l~~ia~~~g~~~-~~e~~i~~e~~~~~~ 282 (426)
T cd01972 245 -QPYGIEATDKWLREIAKVLGMEA-EAEAVIEREHERVAP 282 (426)
T ss_pred -CccCHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHH
Confidence 23588889999999999999864 222233444444443
No 33
>PRK04115 hypothetical protein; Provisional
Probab=29.15 E-value=1.1e+02 Score=25.86 Aligned_cols=76 Identities=28% Similarity=0.352 Sum_probs=49.6
Q ss_pred HHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCC---eEEEEecCCCCcee-eEEEe
Q 025981 35 YSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALG-NCIAC 110 (245)
Q Consensus 35 ~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~---v~v~~l~~~~~aiG-n~i~~ 110 (245)
.+.+.|.|+..-|-|... .|| -+.+.-+||+.|++.+|.+ +.+..+=+-.+..| -++..
T Consensus 23 rktL~eLL~e~~P~i~lr-dGs----------------~h~~kr~ELe~L~~~l~~~~~~lrLPIile~~~~~~~g~~~V 85 (137)
T PRK04115 23 RKTLCELLKEDKPHVILR-DGS----------------RHRIKRRELEFLKELLDEDACRLRLPIILEIDSSLGEGAIVV 85 (137)
T ss_pred HHHHHHHHhCCCCeEEec-CCc----------------eEEecHHHHHHHHHhccchhhheeeeEEEEEecCCCceEEEE
Confidence 456677777445544432 222 2456889999999999887 56655555555553 33333
Q ss_pred eCceEEEecCCChhHHHHHHhhhCCce
Q 025981 111 NDHVALTHTDLDRETEEMIADVLGVEV 137 (245)
Q Consensus 111 ND~~alV~p~l~~~~~~~I~d~LgVeV 137 (245)
++ +..++.|+..||-+.
T Consensus 86 rG----------~~evk~IskiLg~~~ 102 (137)
T PRK04115 86 RG----------KEEVKVISKILGKED 102 (137)
T ss_pred cC----------HHHHHHHHHHhCccc
Confidence 33 558899999999885
No 34
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=28.30 E-value=3e+02 Score=24.43 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=94.6
Q ss_pred HHHHHhhcCC-CcEEEEeec------CceeEeEEeeeeCCeEEecCCCC---HHHHHHHHhhCCC-------CeEEEE--
Q 025981 36 STFEAELADV-FPVVKTSIG------GTRIIGRLCAGNKNGLLLPHTTT---DQELQHLRNSLPD-------QVVVQR-- 96 (245)
Q Consensus 36 ~~i~~~L~~~-v~vv~t~I~------gs~lvG~l~~GN~nGllvp~~~~---d~El~~l~~~l~~-------~v~v~~-- 96 (245)
+.+.+.|..+ ++|+...-. ++-+.-=..+--.+|+++.++.. ..|....+..+.. .+.+..
T Consensus 35 ~~l~~~L~~~Gv~V~~~~~~~~~~~p~~vF~rD~~~~~~~~~ii~~m~~~~R~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (281)
T PF02274_consen 35 DALVEALRSNGVEVIELPPLLEEPLPDMVFTRDPGVVIGGGVIIGRMRAPSRRGEEDVYKEIFEKHPFNIPRVLDIEEEN 114 (281)
T ss_dssp HHHHHHHHTTT-EEEEEHHHHHTT-TTTT-TTCCEEEECTEEEE-B-SSGGGHGHHHHHHHHHHHSCCCTCCEEEEEEC-
T ss_pred HHHHHHHHhCCcEEEEeCCccCCCCCCeEEcCCcEEEEcCCEEEeCCChHHhcCcchHHHHHHHhhccccceeeCCcccc
Confidence 3344444433 777765433 22232222223568999998865 3455554443311 122221
Q ss_pred -ecCCCCceeeEEEeeCceEE--EecCCChhHHHHHHhhhCCc------eEEEee---cCceeeeeEEEEcCCeeeeCCC
Q 025981 97 -IEERLSALGNCIACNDHVAL--THTDLDRETEEMIADVLGVE------VFRQTI---AGNILVGSYCSFSNRGGLVHPH 164 (245)
Q Consensus 97 -l~~~~~aiGn~i~~ND~~al--V~p~l~~~~~~~I~d~LgVe------V~~~tI---ag~~lVGs~~v~Nn~G~LV~p~ 164 (245)
-+.-..- |.++..+++..+ +..--+++.++.+++.|+-. +....- .-..+=-.++.+..+-++++|.
T Consensus 115 ~~~~~lEG-GDv~~~~~~~~v~G~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~ 193 (281)
T PF02274_consen 115 GDPGYLEG-GDVLVLGDNVLVIGVGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPD 193 (281)
T ss_dssp -TTS-B-G-GGEEEESTEEEEEEESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECC
T ss_pred ccCceecC-cEEEEECCEEEEEeecCCCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCc
Confidence 1344445 999988887777 67778889999999999988 111111 2222334677888888998888
Q ss_pred CCHHH-HHHHhhhcC---cceeEEeeccCcceeeeEEEEcCceEEEcCC
Q 025981 165 TSIED-LDELSTLLQ---VPLVAGTVNRGSEVIAAGLTVNDWTAFCGSD 209 (245)
Q Consensus 165 ~~~eE-l~~l~~~l~---V~v~~gtvN~G~~~VGsgivaNd~galvg~~ 209 (245)
+-+++ .+.+.+.|+ .++..-+-..-..+-+|.+..++.-+++...
T Consensus 194 ~~~~~~~~~l~~~l~~~~~~iI~v~~~e~~~~~~N~l~l~~~~vi~~~~ 242 (281)
T PF02274_consen 194 AFDPEEEEELEQALKERGFEIIEVPEEEQWNFACNVLSLGPGKVIAYAS 242 (281)
T ss_dssp HHCTHHHHHHHHHHSSSTCEEEEESSCSCSGGGGS-EEECTTEEEEETT
T ss_pred ccchHHHHHHHHHhcccCcEEEEeccchhhhccCCEEEecCCEEEECCC
Confidence 76554 666777655 3444333222234555557776555555544
No 35
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=28.27 E-value=3.7e+02 Score=22.75 Aligned_cols=113 Identities=13% Similarity=0.174 Sum_probs=56.9
Q ss_pred hHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCC-CHHHHHHHHhhCCCCeEEEEe-cCCCCceeeEEEe
Q 025981 33 SFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTT-TDQELQHLRNSLPDQVVVQRI-EERLSALGNCIAC 110 (245)
Q Consensus 33 ~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~-~d~El~~l~~~l~~~v~v~~l-~~~~~aiGn~i~~ 110 (245)
++.+.+++.....++.++.. -..|-.+|++. ..+.++.|++..+..+.+..+ .+-..-+-.+.-+
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~-------------~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~ 83 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVD-------------VMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKA 83 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEe-------------CccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHc
Confidence 34556666655335555553 34566666644 688889998765422333222 1100011111123
Q ss_pred eCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 025981 111 NDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 176 (245)
Q Consensus 111 ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~ 176 (245)
.=++..+|-+-++...+.++...+..+. -|..++|....+.++.+.+.
T Consensus 84 g~d~v~vh~~~~~~~~~~~~~~~~~~~~------------------~g~~~~~~t~~e~~~~~~~~ 131 (220)
T PRK05581 84 GADIITFHVEASEHIHRLLQLIKSAGIK------------------AGLVLNPATPLEPLEDVLDL 131 (220)
T ss_pred CCCEEEEeeccchhHHHHHHHHHHcCCE------------------EEEEECCCCCHHHHHHHHhh
Confidence 3355667777665555555554443321 23345677666666666433
No 36
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=28.16 E-value=57 Score=32.46 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=67.1
Q ss_pred hhHHHHHHhhhCCceEEE----eecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEE
Q 025981 123 RETEEMIADVLGVEVFRQ----TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLT 198 (245)
Q Consensus 123 ~~~~~~I~d~LgVeV~~~----tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgiv 198 (245)
-...+.+-+-+|++|... ++...+-+| .|-.=|+++|..+ +-...|++-+++|.. +.++.
T Consensus 207 ~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~----~~~~~c~~~P~ls-~aa~~Le~~~gvp~~------~~P~P----- 270 (457)
T CHL00073 207 ASQLTLELKRQGIKVSGWLPSQRYTDLPSLG----EGVYVCGVNPFLS-RTATTLMRRRKCKLI------GAPFP----- 270 (457)
T ss_pred HHHHHHHHHHcCCeEeEEeCCCCHHHHHhhC----cccEEEEcCcchH-HHHHHHHHHhCCcee------ecCCc-----
Confidence 556677778889998632 233344444 3444589999999 778899888898862 33442
Q ss_pred EcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHhhhhc
Q 025981 199 VNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDSY 244 (245)
Q Consensus 199 aNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~ 244 (245)
+|.+-|+.-|..|.++||++ +..+ .+.|..++|.|
T Consensus 271 -------iGi~~Td~fLr~Ia~~~G~~---pe~l-~~Er~rl~dal 305 (457)
T CHL00073 271 -------IGPDGTRAWIEKICSVFGIE---PQGL-EEREEQIWESL 305 (457)
T ss_pred -------CcHHHHHHHHHHHHHHhCcC---HHHH-HHHHHHHHHHH
Confidence 89999999999999999974 3445 66666666654
No 37
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=28.05 E-value=1.7e+02 Score=21.81 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=35.9
Q ss_pred cCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEE
Q 025981 20 TNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVV 94 (245)
Q Consensus 20 t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v 94 (245)
...|.-+|.+..+++-.. --+ -.-|+.+|+|..+=++|.-.-+.+.++| +..+=.+.+.....|.+.|
T Consensus 11 ~~~fv~vP~~v~~~l~~~---~~g--~v~V~~tI~g~~~~~sl~p~g~G~~~Lp--v~~~vRk~~g~~~Gd~V~v 78 (80)
T PF08922_consen 11 GWTFVEVPFDVAEELGEG---GWG--RVPVRGTIDGHPWRTSLFPMGNGGYILP--VKAAVRKAIGKEAGDTVEV 78 (80)
T ss_dssp S-EEEE--S-HHHHH--S-----S---EEEEEEETTEEEEEEEEESSTT-EEEE--E-HHHHHHHT--TTSEEEE
T ss_pred ceEEEEeCHHHHHHhccc---cCC--ceEEEEEECCEEEEEEEEECCCCCEEEE--EcHHHHHHcCCCCCCEEEE
Confidence 345666776665443322 123 5678999999999999999667788898 3333333343333333544
No 38
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.61 E-value=92 Score=29.98 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=53.2
Q ss_pred eEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhC
Q 025981 15 VFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSL 88 (245)
Q Consensus 15 vf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l 88 (245)
+++..||.|.+.|+-++.... + -=.|+.++++-..-|+-..==+-+|++|.....++|+++-++.
T Consensus 50 ~la~tTD~~~i~P~ff~~~di-------G--~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i~~si 114 (339)
T COG0309 50 VLAFTTDPFVIDPLFFPGGDI-------G--KLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERILKSI 114 (339)
T ss_pred eEEEEeCCeEecccccCCCce-------E--EEEEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHHHHHH
Confidence 899999999999988877522 2 2367778888888887777778899999999999999887765
No 39
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=26.99 E-value=1.2e+02 Score=23.58 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=39.6
Q ss_pred eeeCCCCCHHHHHHHhhhcCccee--EEee----ccCcceeeeEEEEcCce--EEEcCCCCHHHHHHHHHhhCCcc
Q 025981 159 GLVHPHTSIEDLDELSTLLQVPLV--AGTV----NRGSEVIAAGLTVNDWT--AFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 159 ~LV~p~~~~eEl~~l~~~l~V~v~--~gtv----N~G~~~VGsgivaNd~g--alvg~~tT~~El~~Ie~~l~v~~ 226 (245)
.+++|+.++++++.+-+-+.--+. -|++ +.|..-+.==|==+.+| +++.-+..+.-+..+++.|++.+
T Consensus 12 ~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e 87 (97)
T CHL00123 12 YLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDE 87 (97)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCC
Confidence 689999999998866554322210 0121 22222211112224455 45566667888999999998876
No 40
>PLN02334 ribulose-phosphate 3-epimerase
Probab=25.01 E-value=4.6e+02 Score=22.82 Aligned_cols=101 Identities=9% Similarity=0.042 Sum_probs=57.1
Q ss_pred CcEEEEeCCCC---hhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCC-HHHHHHHHhhCCCCeEEEE
Q 025981 21 NAYCLVAIGGS---ESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTT-DQELQHLRNSLPDQVVVQR 96 (245)
Q Consensus 21 ~~~~lvp~~~~---~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~-d~El~~l~~~l~~~v~v~~ 96 (245)
++|.+.|.-.+ .++.+.+++.+...++.++..+.+..+ +|+... .+.++.||+....-+.++.
T Consensus 6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f-------------~~~~~~g~~~~~~l~~~~~~~~~vhl 72 (229)
T PLN02334 6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHF-------------VPNLTIGPPVVKALRKHTDAPLDCHL 72 (229)
T ss_pred CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCc-------------CCccccCHHHHHHHHhcCCCcEEEEe
Confidence 67777776553 356678888877678999998776543 454332 3677888876322245543
Q ss_pred ec-CCCCceeeEEEeeCceEEEecC--CChhHHHHHHhhhC
Q 025981 97 IE-ERLSALGNCIACNDHVALTHTD--LDRETEEMIADVLG 134 (245)
Q Consensus 97 l~-~~~~aiGn~i~~ND~~alV~p~--l~~~~~~~I~d~Lg 134 (245)
+= .-..-+-.+..+.=++..+|.+ .++...+.++..++
T Consensus 73 mv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~ 113 (229)
T PLN02334 73 MVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKS 113 (229)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHH
Confidence 32 1111222333344456666777 24444455555544
No 41
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.22 E-value=54 Score=29.77 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=71.8
Q ss_pred CcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhC---CCCeE-EEEecCCCCceee---E-EEeeCceEEE
Q 025981 46 FPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSL---PDQVV-VQRIEERLSALGN---C-IACNDHVALT 117 (245)
Q Consensus 46 v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l---~~~v~-v~~l~~~~~aiGn---~-i~~ND~~alV 117 (245)
.++||..-.....+....=.--.|+++|..-|-+|.+.+-+.. |.|.. +. -..+.+..|. | -.+|++..++
T Consensus 71 ~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~-~~~~~~~y~~~~~y~~~an~~~~vi 149 (256)
T PRK10558 71 APVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVS-VSHRANMFGTVPDYFAQSNKNITVL 149 (256)
T ss_pred CcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCC-ccccccccCChHHHHHHhccccEEE
Confidence 5678887777777777777788999999999999999987664 33310 00 0001122221 2 2368888888
Q ss_pred ecCCChhHHHHHHhhhCCc-eEEEeecCceeeeeE
Q 025981 118 HTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSY 151 (245)
Q Consensus 118 ~p~l~~~~~~~I~d~LgVe-V~~~tIag~~lVGs~ 151 (245)
+.-=+.+.++.+++.+.++ |--..++-.-|-.++
T Consensus 150 ~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~sl 184 (256)
T PRK10558 150 VQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAAL 184 (256)
T ss_pred EEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHc
Confidence 8888889999999999887 545556666655444
No 42
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=23.21 E-value=2.2e+02 Score=27.34 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=47.5
Q ss_pred hHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe---eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEc
Q 025981 124 ETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG---GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVN 200 (245)
Q Consensus 124 ~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G---~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaN 200 (245)
..++.+-+.+|+++.. .+-+.. +.-+... ..| ..++|... .-.+.|++-+|+|... ...|
T Consensus 168 ~elk~lL~~~Gi~v~~-~lpd~~-~~e~~~~-~~~~~~~~~~~~~~-~~A~~Le~~~GiP~~~----~~~P--------- 230 (407)
T TIGR01279 168 DQLRLELKQLGIPVVG-FLPASH-FTELPVI-GPGTVVAPLQPYLS-DTATTLRRERGAKVLS----APFP--------- 230 (407)
T ss_pred HHHHHHHHHcCCeEEE-EeCCCC-cchhhhc-CCCeEEEEechHHH-HHHHHHHHHhCCcccc----CCCC---------
Confidence 4456677778888862 121211 1111100 011 35666655 3567788878888622 2222
Q ss_pred CceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981 201 DWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 201 d~galvg~~tT~~El~~Ie~~l~v~~ 226 (245)
+|.+-|..-+..|.+.||.+.
T Consensus 231 -----iGi~~T~~~l~~la~~~g~~~ 251 (407)
T TIGR01279 231 -----FGPDGTRRFLEAIAAEFGIEV 251 (407)
T ss_pred -----cCHHHHHHHHHHHHHHhCcCH
Confidence 477889999999999999863
No 43
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=23.18 E-value=1e+02 Score=27.84 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=70.1
Q ss_pred CcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhC---CCCeE-EEEecCCCCceee---E-EEeeCceEEE
Q 025981 46 FPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSL---PDQVV-VQRIEERLSALGN---C-IACNDHVALT 117 (245)
Q Consensus 46 v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l---~~~v~-v~~l~~~~~aiGn---~-i~~ND~~alV 117 (245)
.++||..-..-..+....=.--.|+++|..-|-+|.+++.+.. |.|.. +. -..+....|. | -.+|++..++
T Consensus 64 ~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~-~~~r~~~y~~~~~y~~~~n~~~~vi 142 (249)
T TIGR03239 64 APVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVS-VSHRSNRYGTVPDYFATINDNITVL 142 (249)
T ss_pred CcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCC-cchhhhccCChHHHHHHhccccEEE
Confidence 4677777777777777777778999999999999999998764 33311 00 0001111221 2 2368888888
Q ss_pred ecCCChhHHHHHHhhhCCc-eEEEeecCceeeeeE
Q 025981 118 HTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSY 151 (245)
Q Consensus 118 ~p~l~~~~~~~I~d~LgVe-V~~~tIag~~lVGs~ 151 (245)
+.-=+.+.++.+++.+.++ |--..++-.-|--++
T Consensus 143 ~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~sl 177 (249)
T TIGR03239 143 VQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAAL 177 (249)
T ss_pred EEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHc
Confidence 8888889999999999887 444455555544333
No 44
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=22.81 E-value=1.4e+02 Score=25.47 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=37.3
Q ss_pred EEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcce
Q 025981 115 ALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPL 181 (245)
Q Consensus 115 alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~-~l~~~l~V~v 181 (245)
-|.+|-+++++...+++. |-.-++|++.++..|++ .++.+++|.|
T Consensus 65 IIk~Pl~TEKa~~~~E~~----------------------N~yvF~Vd~kAnK~qIK~AVEklf~VkV 110 (145)
T PTZ00191 65 IIKYPLTTEKAMKKIEDN----------------------NTLVFIVDQRANKTQIKKAVEKLYDVKV 110 (145)
T ss_pred hhhcccccHHHHHHHhhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCee
Confidence 567899999988887765 44568999999999998 6778899997
No 45
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.70 E-value=89 Score=24.16 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=40.5
Q ss_pred eeeEEEeeCceEEEecCCChhHHHHHHhhhCCc-eEEEeecCceeeeeEEEEcCCeeeeCCCCCHH
Q 025981 104 LGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIE 168 (245)
Q Consensus 104 iGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVe-V~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~e 168 (245)
.||.+.+|--.|+|+|+-.+ ..+.|.|+-+-- .+-.|.+.- .-+..+.+++-.+++.--.+.
T Consensus 10 FGNivsanRviaIVsPESaP-iKRii~eArdr~~LIDATYGRr--TRavii~DS~hvILSAiQPET 72 (89)
T COG2052 10 FGNIVSANRVIAIVSPESAP-IKRIIQEARDRGMLIDATYGRR--TRAVIITDSDHVILSAIQPET 72 (89)
T ss_pred cccEeecceEEEEECCCccc-HHHHHHHHHhcCcEEEcccCce--eeEEEEecCCcEEEeccChHH
Confidence 58999999999999999655 557777765533 444444432 234555677777766544443
No 46
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=22.28 E-value=1.2e+02 Score=23.90 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=23.3
Q ss_pred eeeCCCCCHHHHH-HHhhhcCcceeE-Eeecc
Q 025981 159 GLVHPHTSIEDLD-ELSTLLQVPLVA-GTVNR 188 (245)
Q Consensus 159 ~LV~p~~~~eEl~-~l~~~l~V~v~~-gtvN~ 188 (245)
+.|+|+++..|++ .++++|+|.+.. -|+|.
T Consensus 26 F~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~ 57 (94)
T COG0089 26 FIVDPDATKPEIKAAVEELFGVKVEKVNTLNT 57 (94)
T ss_pred EEECCCCCHHHHHHHHHHHhCCeEEEEEEEEe
Confidence 6799999999997 688899999733 34433
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=21.95 E-value=93 Score=30.70 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=28.3
Q ss_pred ceEEEecCCChhHHHHHHhhhCCceEEEeecCceeee
Q 025981 113 HVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVG 149 (245)
Q Consensus 113 ~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVG 149 (245)
++|=||||+|++.++.+=|.+| ++...++|.-++-+
T Consensus 214 YVaSvHpDLSe~DiKSVFEAFG-~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 214 YVASVHPDLSETDIKSVFEAFG-EIVKCQLARAPTGR 249 (544)
T ss_pred EeeecCCCccHHHHHHHHHhhc-ceeeEEeeccCCCC
Confidence 4678999999999999999998 56666676665443
No 48
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=20.60 E-value=99 Score=27.86 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=69.0
Q ss_pred CcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhC---CCCeEEEEec-C--CCCcee---eEE-EeeCceE
Q 025981 46 FPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSL---PDQVVVQRIE-E--RLSALG---NCI-ACNDHVA 115 (245)
Q Consensus 46 v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l---~~~v~v~~l~-~--~~~aiG---n~i-~~ND~~a 115 (245)
.++||..-.+...+...+=..-.|+++|..-|.+|.+.+-+.+ |.|..- +. . +....| .|. .+|++..
T Consensus 64 ~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg--~~~~~~~~~~~~~~~~y~~~~n~~~~ 141 (249)
T TIGR02311 64 SPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRG--VGSALARASRWNRIPDYLQQADEEIC 141 (249)
T ss_pred CcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCC--CCCccchhhccCChHHHHHHhhhceE
Confidence 5678877777777777777778999999999999999888775 222110 00 0 000111 111 2677788
Q ss_pred EEecCCChhHHHHHHhhhCCc-eEEEeecCceeeeeE
Q 025981 116 LTHTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSY 151 (245)
Q Consensus 116 lV~p~l~~~~~~~I~d~LgVe-V~~~tIag~~lVGs~ 151 (245)
+++.-=+.+.++.+++.+.+| |--..++..-+--++
T Consensus 142 vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~sl 178 (249)
T TIGR02311 142 VLLQVETREALDNLEEIAAVEGVDGVFIGPADLAASM 178 (249)
T ss_pred EEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhc
Confidence 888888889999999999887 444455555444444
Done!