Query 025981
Match_columns 245
No_of_seqs 175 out of 458
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 21:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_J EIF6, translation initi 100.0 6.8E-87 2.3E-91 595.6 18.4 244 1-244 4-247 (248)
2 1g62_A Ribosome anti-associati 100.0 4.5E-82 1.6E-86 557.8 17.9 224 1-224 1-224 (224)
3 4adx_I AIF6; ribosome, protein 100.0 1.4E-72 4.8E-77 497.3 29.5 221 1-226 1-221 (222)
4 1g61_A EIF-6, translation init 100.0 9.3E-72 3.2E-76 493.7 15.7 221 1-224 3-227 (228)
5 4adx_I AIF6; ribosome, protein 100.0 5.3E-40 1.8E-44 289.7 22.5 172 2-179 46-219 (222)
6 1g61_A EIF-6, translation init 100.0 2.9E-37 9.8E-42 273.2 8.8 172 3-179 49-227 (228)
7 1g62_A Ribosome anti-associati 100.0 3.6E-32 1.2E-36 239.9 8.5 125 8-179 99-224 (224)
8 4a18_J EIF6, translation initi 99.9 1.1E-27 3.6E-32 214.0 10.6 128 99-226 11-140 (248)
9 3i4a_A N(G),N(G)-dimethylargin 57.2 57 0.0019 29.0 9.3 124 14-142 152-285 (308)
10 1jdw_A L-arginine\:glycine ami 55.6 34 0.0012 32.0 7.8 107 73-181 270-390 (423)
11 3i4a_A N(G),N(G)-dimethylargin 50.1 1.4E+02 0.0046 26.5 13.6 137 68-209 109-261 (308)
12 3j21_T 50S ribosomal protein L 39.6 58 0.002 24.1 5.4 51 116-188 7-59 (86)
13 1vq8_S 50S ribosomal protein L 39.3 56 0.0019 24.1 5.3 51 116-188 6-58 (85)
14 1jdw_A L-arginine\:glycine ami 34.0 2.2E+02 0.0076 26.4 9.7 117 21-142 262-395 (423)
15 1h70_A NG, NG-dimethylarginine 33.6 1.3E+02 0.0043 25.5 7.4 107 24-143 126-239 (255)
16 3lqv_A PRE-mRNA branch site pr 33.3 64 0.0022 23.2 4.8 101 61-180 10-110 (115)
17 1wex_A Hypothetical protein (r 32.1 1.5E+02 0.005 21.6 6.7 54 61-131 17-70 (104)
18 3r8s_T 50S ribosomal protein L 31.8 69 0.0024 23.9 4.8 45 116-182 11-56 (93)
19 3aek_A Light-independent proto 30.4 59 0.002 30.0 5.1 173 13-243 119-297 (437)
20 2zkr_s 60S ribosomal protein L 29.1 98 0.0034 25.4 5.6 53 114-188 75-129 (156)
21 2zjr_Q 50S ribosomal protein L 28.7 47 0.0016 25.0 3.3 33 155-187 23-57 (95)
22 4f25_A Polyadenylate-binding p 25.8 1.6E+02 0.0053 21.3 5.9 61 62-135 8-68 (115)
23 3h7c_X Agmatine deiminase; str 25.8 1.7E+02 0.0059 27.1 7.3 99 79-180 67-206 (383)
24 3u5e_X 60S ribosomal protein L 24.7 1.3E+02 0.0044 24.3 5.5 52 115-188 62-115 (142)
25 1x4c_A Splicing factor, argini 24.6 1.5E+02 0.005 21.1 5.4 48 72-132 23-70 (108)
26 1bwd_A ADT, protein (inosamine 23.6 1.3E+02 0.0045 26.8 6.0 105 73-181 195-315 (348)
27 2dgt_A RNA-binding protein 30; 23.4 1.8E+02 0.0061 19.8 5.7 47 72-132 18-64 (92)
28 1qgu_B Protein (nitrogenase mo 21.2 1.1E+02 0.0038 29.0 5.2 64 159-243 287-350 (519)
29 3tve_T 50S ribosomal protein L 21.0 97 0.0033 23.1 3.8 25 158-182 25-50 (92)
30 1cqm_A Ribosomal protein S6; a 20.7 76 0.0026 23.5 3.2 67 159-226 8-83 (101)
No 1
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=6.8e-87 Score=595.58 Aligned_cols=244 Identities=65% Similarity=1.074 Sum_probs=224.4
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E 83 (248)
T 4a18_J 4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE 83 (248)
T ss_dssp CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++||++++|+++++|+||+||||+|||++|||||++++++++.|+|+|||||+|++|||+++|||++++||+|+|
T Consensus 84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~L 163 (248)
T 4a18_J 84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGL 163 (248)
T ss_dssp HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEE
T ss_pred HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHh
Q 025981 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSL 240 (245)
Q Consensus 161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 240 (245)
|||.++++|+++|+++|+||+.+||+|+|+++||||++||||||+|||+||++|+++||++||+++++++++..+||++|
T Consensus 164 Vhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~ 243 (248)
T 4a18_J 164 VHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF 243 (248)
T ss_dssp ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHHTTCC---------------
T ss_pred ECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred hhhc
Q 025981 241 IDSY 244 (245)
Q Consensus 241 ~~~~ 244 (245)
||+|
T Consensus 244 ~~~~ 247 (248)
T 4a18_J 244 VMNL 247 (248)
T ss_dssp ----
T ss_pred Hhhc
Confidence 9987
No 2
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=4.5e-82 Score=557.84 Aligned_cols=224 Identities=75% Similarity=1.153 Sum_probs=222.9
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus 1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E 80 (224)
T 1g62_A 1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE 80 (224)
T ss_dssp CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||++||++++|+++++|++|+|||++|||++|||||++++++++.|+|+|||||+|++|||+++|||++++||+|+|
T Consensus 81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~L 160 (224)
T 1g62_A 81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL 160 (224)
T ss_dssp HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v 224 (245)
|||+++++|+++|+++|+||+.+||+|+|.++||||++|||||++|||+||++|+++||++||+
T Consensus 161 VhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~f~v 224 (224)
T 1g62_A 161 VHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224 (224)
T ss_dssp ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 3
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.4e-72 Score=497.34 Aligned_cols=221 Identities=33% Similarity=0.494 Sum_probs=218.1
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|++|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus 1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e 78 (222)
T 4adx_I 1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE 78 (222)
T ss_pred CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeee
Q 025981 81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL 160 (245)
Q Consensus 81 l~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L 160 (245)
+++||+. +++|.++++|++++||+++|||++|||||++++++++.|+|+|||+|++.+|++.++||+++++||+|+|
T Consensus 79 ~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~l 155 (222)
T 4adx_I 79 IDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGAL 155 (222)
T ss_pred HHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEE
Confidence 9999983 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981 161 VHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 161 V~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~ 226 (245)
|||+++++|+++|+++|+||+.+||+|+|+++||||++|||||++|||+||++||++||++||+.+
T Consensus 156 VhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~f~~~~ 221 (222)
T 4adx_I 156 LNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221 (222)
T ss_pred ECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999865
No 4
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=9.3e-72 Score=493.75 Aligned_cols=221 Identities=34% Similarity=0.466 Sum_probs=219.0
Q ss_pred CceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHH
Q 025981 1 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQE 80 (245)
Q Consensus 1 M~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~E 80 (245)
|+.|++|+|||+||||+++||+|||+|++.++++++.|+++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus 3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e 80 (228)
T 1g61_A 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE 80 (228)
T ss_dssp CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence 8999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhhC---CCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCC
Q 025981 81 LQHLRNSL---PDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNR 157 (245)
Q Consensus 81 l~~l~~~l---~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~ 157 (245)
+++||++| |++++|+++++|++++||+++|||++|||||++ ++.++.|+|+|+|+|++.+|++..++|++++++|+
T Consensus 81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~ 159 (228)
T 1g61_A 81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK 159 (228)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceEEEEeCCccceeeEEEEecc
Confidence 99999998 789999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred eeeeCCCCCHHHHHHHhhhcCcc-eeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 025981 158 GGLVHPHTSIEDLDELSTLLQVP-LVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 224 (245)
Q Consensus 158 G~LV~p~~~~eEl~~l~~~l~V~-v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v 224 (245)
|+||||+++++|+++|+++|||| +.+||+|+|+++||||++|||||++|||+||++|+++||++||+
T Consensus 160 G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 160 GCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227 (228)
T ss_dssp EEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred eEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999997
No 5
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.3e-40 Score=289.70 Aligned_cols=172 Identities=22% Similarity=0.252 Sum_probs=162.7
Q ss_pred ceeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHH
Q 025981 2 ATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQEL 81 (245)
Q Consensus 2 ~~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El 81 (245)
+.|++|+||++||+|++.|++++|||++.+++..+.|++ ++ +++.+++ ++++.+|.|+++|+||+|||+.++++|+
T Consensus 46 ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~--v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~ 121 (222)
T 4adx_I 46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AG--VEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDAL 121 (222)
T ss_pred EEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cC--CeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHH
Confidence 478999999999999999999999999999999999999 57 9999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCeEEEEec-CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec-CceeeeeEEEEcCCee
Q 025981 82 QHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIA-GNILVGSYCSFSNRGG 159 (245)
Q Consensus 82 ~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~ 159 (245)
+.|++.|+ ++|.+.. .+++++||++++||++|||||+++++..+.|+|+||||+.++|++ |+++|||.+++||+|+
T Consensus 122 e~I~d~L~--VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~ 199 (222)
T 4adx_I 122 QVIGDVLE--VDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGV 199 (222)
T ss_pred HHHHHhhC--ccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEE
Confidence 99999985 5554432 469999999999999999999999999999999999999999997 9999999999999999
Q ss_pred eeCCCCCHHHHHHHhhhcCc
Q 025981 160 LVHPHTSIEDLDELSTLLQV 179 (245)
Q Consensus 160 LV~p~~~~eEl~~l~~~l~V 179 (245)
+|||+++++|+++|+++|+.
T Consensus 200 lvg~~TT~~El~~ie~~f~~ 219 (222)
T 4adx_I 200 LVGEETTGPELARIEEALGF 219 (222)
T ss_pred EECCCCCHHHHHHHHHHhcc
Confidence 99999999999999999984
No 6
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=2.9e-37 Score=273.18 Aligned_cols=172 Identities=20% Similarity=0.207 Sum_probs=159.5
Q ss_pred eeeeeeCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhc---CC--CcEEEEeecCceeEeEEeeeeCCeEEecCCCC
Q 025981 3 TRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELA---DV--FPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTT 77 (245)
Q Consensus 3 ~r~~~~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~---~~--v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~ 77 (245)
.|.+|+||++||+|++.|++++|||++.+++.++.|++.|+ +. ++++++ +++.+|.++++|+||+|||+-.
T Consensus 49 v~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~---~~~alGnli~~Nd~galV~~el- 124 (228)
T 1g61_A 49 LQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKS---KNTALGNLILTNDKGALISPEL- 124 (228)
T ss_dssp EECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECC---SSCCHHHHEEECSSEEEECGGG-
T ss_pred EEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcC---CCcceEEEEEecCccEEeCHHH-
Confidence 58899999999999999999999999999999999999984 22 556765 9999999999999999999966
Q ss_pred HHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCc-eEEEeec-CceeeeeEEEEc
Q 025981 78 DQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIA-GNILVGSYCSFS 155 (245)
Q Consensus 78 d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVe-V~~~tIa-g~~lVGs~~v~N 155 (245)
++..+.|++.|+.++.++++.++.++.||.+++| ++|||||+++++..+.|+|+|||| +.++|++ |+++|||.+++|
T Consensus 125 ~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN-~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaN 203 (228)
T 1g61_A 125 KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTN-KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIAN 203 (228)
T ss_dssp GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECS-SEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEEC
T ss_pred HHHHHHHHHhcCCceEEEEeCCccceeeEEEEec-ceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEE
Confidence 5555677778777777888999999999999999 999999999999999999999999 9999999 999999999999
Q ss_pred CCeeeeCCCCCHHHHHHHhhhcCc
Q 025981 156 NRGGLVHPHTSIEDLDELSTLLQV 179 (245)
Q Consensus 156 n~G~LV~p~~~~eEl~~l~~~l~V 179 (245)
|+|++|||+++++|+++|+++|++
T Consensus 204 n~G~lvg~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 204 SKGAVVGGDTTGPELLIIEDALGL 227 (228)
T ss_dssp SSCEEEETTCCHHHHHHHHHHHTC
T ss_pred CCEEEECCCCCHHHHHHHHHHhcc
Confidence 999999999999999999999986
No 7
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=99.97 E-value=3.6e-32 Score=239.87 Aligned_cols=125 Identities=17% Similarity=0.261 Sum_probs=122.0
Q ss_pred eCCCceeeEEEecCcEEEEeCCCChhHHHHHHHhhcCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhh
Q 025981 8 ENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNS 87 (245)
Q Consensus 8 ~gs~~IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 87 (245)
..-++||+|+++||+||||||++++++++.|+++|+ ||+++++|+|+++||++++||+
T Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn-------------------- 156 (224)
T 1g62_A 99 ERLSALGNVICCNDYVALVHPDIDRETEELISDVLG--VEVFRQTISGNILVGSYCSLSN-------------------- 156 (224)
T ss_dssp CCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHT--SEEEECCBTTBSCGGGSEEECS--------------------
T ss_pred CcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCcceEEEEEEEeC--------------------
Confidence 356899999999999999999999999999999999 9999999999999999999995
Q ss_pred CCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee-cCceeeeeEEEEcCCeeeeCCCCC
Q 025981 88 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGLVHPHTS 166 (245)
Q Consensus 88 l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LV~p~~~ 166 (245)
++|||||+++++..+.|+|+||||+.++|| +|+++|||.+++||+|+||||+++
T Consensus 157 -------------------------~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT 211 (224)
T 1g62_A 157 -------------------------QGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTT 211 (224)
T ss_dssp -------------------------SCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCC
T ss_pred -------------------------cEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhhhcCc
Q 025981 167 IEDLDELSTLLQV 179 (245)
Q Consensus 167 ~eEl~~l~~~l~V 179 (245)
++|+++|+++|++
T Consensus 212 ~~El~~Ie~~f~v 224 (224)
T 1g62_A 212 APELSVIESIFRL 224 (224)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999986
No 8
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=99.95 E-value=1.1e-27 Score=213.98 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=124.3
Q ss_pred CCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhC--CceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhh
Q 025981 99 ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTL 176 (245)
Q Consensus 99 ~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~ 176 (245)
++++.+|+|+.+||+|||+||+.+++..+.+++.|+ +|+++++|+|+++||+++++|+||+|||+.++|+|++.|++.
T Consensus 11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 90 (248)
T 4a18_J 11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS 90 (248)
T ss_dssp TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence 689999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCcc
Q 025981 177 LQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 177 l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~ 226 (245)
|+-.+...++....+++|+.++|||++|++||+.+.+..+.|+|+||++.
T Consensus 91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV 140 (248)
T 4a18_J 91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEV 140 (248)
T ss_dssp SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEE
T ss_pred CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcE
Confidence 87666679999999999999999999999999999999999999999987
No 9
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=57.16 E-value=57 Score=28.95 Aligned_cols=124 Identities=11% Similarity=0.153 Sum_probs=74.5
Q ss_pred eeEEEecCcEEEEeCC--CChhHHHHHHHhh-cCCCcEEEEeec-CceeEeEEee-eeCCeEEecCCCCHHHHHHHHhhC
Q 025981 14 GVFSKLTNAYCLVAIG--GSESFYSTFEAEL-ADVFPVVKTSIG-GTRIIGRLCA-GNKNGLLLPHTTTDQELQHLRNSL 88 (245)
Q Consensus 14 Gvf~~~t~~~~lvp~~--~~~~~~~~i~~~L-~~~v~vv~t~I~-gs~lvG~l~~-GN~nGllvp~~~~d~El~~l~~~l 88 (245)
|=+....+. .++..+ .+++-.+.+++.| + .+|+...+. -.-|=..|+. +.+.-++-|+....+.++.|++..
T Consensus 152 GDvl~~g~~-v~vG~s~RTn~~gi~~l~~~l~~--~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~ 228 (308)
T 3i4a_A 152 GDVLFTGRE-FFVGLSKRTNQRGAEILADTFKD--YAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMS 228 (308)
T ss_dssp GGEEECSSC-EEEEESSSCCHHHHHHHHHHTTT--SCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTC
T ss_pred ceEEEECCE-EEEEEchhcCHHHHHHHHHHcCC--CeEEEEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhc
Confidence 445555444 666544 5677889999999 5 666665543 3344555666 444444446666677788888743
Q ss_pred CCCeEEEEecCCCCceeeEEEee--C--ceEEEe-cCCChhHHHHHHhhhCCceEEEee
Q 025981 89 PDQVVVQRIEERLSALGNCIACN--D--HVALTH-TDLDRETEEMIADVLGVEVFRQTI 142 (245)
Q Consensus 89 ~~~v~v~~l~~~~~aiGn~i~~N--D--~~alV~-p~l~~~~~~~I~d~LgVeV~~~tI 142 (245)
..+.++-.+++. ..+|++.+| + +..+++ +.-.+...+.+++.-|.+++...+
T Consensus 229 ~~~~~iI~vpe~--~a~N~L~ln~~~~~~vvi~~~~~~~p~~~~~l~~l~g~~vi~vd~ 285 (308)
T 3i4a_A 229 DHRYDKLTVPDD--IAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSM 285 (308)
T ss_dssp SSCCEEEEESSG--GGGCCEEEEETTTEEEEEEECTTTCHHHHHHHHHCTTEEEEEECC
T ss_pred cCCCEEEECChH--HhCCEEEEccCCCCCEEEecCcccCcccHHHHHhcCCCEEEEecH
Confidence 335566556553 667888888 2 344443 333455666665432777776544
No 10
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=55.59 E-value=34 Score=31.97 Aligned_cols=107 Identities=8% Similarity=0.068 Sum_probs=68.8
Q ss_pred cCCCCHHHHHHHHhhCCCCeEEEEecCCCC---ce-eeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeecCce--
Q 025981 73 PHTTTDQELQHLRNSLPDQVVVQRIEERLS---AL-GNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNI-- 146 (245)
Q Consensus 73 p~~~~d~El~~l~~~l~~~v~v~~l~~~~~---ai-Gn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~-- 146 (245)
+..++.+.++.|++.|+.+.+|..++.... =+ ..+..+.+..++++|+..++..+.+++. +.+++..+..+..
T Consensus 270 s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~-~~~iI~~p~~~~~~~ 348 (423)
T 1jdw_A 270 SQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA-GWTIITPPTPIIPDD 348 (423)
T ss_dssp CSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT-TCEEECCCCCCCCTT
T ss_pred cccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC-CCEEEECCCchhccc
Confidence 355678999999999864566766664322 22 3566788888899998877777777764 7777776543321
Q ss_pred --------eeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcce
Q 025981 147 --------LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPL 181 (245)
Q Consensus 147 --------lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v 181 (245)
..|+.+..=|.|.++.|.-..+-.+.|++. |.++
T Consensus 349 ~~~~~s~~~~~~N~L~inpg~VI~~~~~~~~~~~L~~~-G~~V 390 (423)
T 1jdw_A 349 HPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKL-GITT 390 (423)
T ss_dssp SCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEE
T ss_pred cccccccccceeeEEEECCCEEEEeCCCHHHHHHHHHC-CCEE
Confidence 113322222335555566677777888876 7665
No 11
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=50.10 E-value=1.4e+02 Score=26.46 Aligned_cols=137 Identities=11% Similarity=0.146 Sum_probs=84.9
Q ss_pred CeEEecCCCC---HHHHHHHHhhCC-CCeEEEEecC---CCCceeeEEEeeCceEE-EecCCChhHHHHHHhhh-CCceE
Q 025981 68 NGLLLPHTTT---DQELQHLRNSLP-DQVVVQRIEE---RLSALGNCIACNDHVAL-THTDLDRETEEMIADVL-GVEVF 138 (245)
Q Consensus 68 nGllvp~~~~---d~El~~l~~~l~-~~v~v~~l~~---~~~aiGn~i~~ND~~al-V~p~l~~~~~~~I~d~L-gVeV~ 138 (245)
+|+++.++.. ..|...++..+. .+.++..+++ -... |.++..++.+.+ ++.--+++.++.+++.| +.+|+
T Consensus 109 ~~vii~~m~~~~Rr~E~~~~~~~l~~~g~~i~~~~~~~~~lEG-GDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~~~~Vv 187 (308)
T 3i4a_A 109 ETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDG-GDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVS 187 (308)
T ss_dssp TEEEECCCSSGGGGGGHHHHHHHHHTTTCEEEECCCTTCCCCG-GGEEECSSCEEEEESSSCCHHHHHHHHHHTTTSCEE
T ss_pred CEEEEeCCCchhhhhhHHHHHHHHHHCCCeEEEccCCCCcCcc-ceEEEECCEEEEEEchhcCHHHHHHHHHHcCCCeEE
Confidence 4777777643 345555555442 2567766643 3444 999999887443 35556788899999999 87777
Q ss_pred EEee-cCceeeeeEEEEcCCeeeeCCCC-CHHHHHHHhhh--cCcceeEEeeccCcceeeeEEEEc--Cc-eEEEcCC
Q 025981 139 RQTI-AGNILVGSYCSFSNRGGLVHPHT-SIEDLDELSTL--LQVPLVAGTVNRGSEVIAAGLTVN--DW-TAFCGSD 209 (245)
Q Consensus 139 ~~tI-ag~~lVGs~~v~Nn~G~LV~p~~-~~eEl~~l~~~--l~V~v~~gtvN~G~~~VGsgivaN--d~-galvg~~ 209 (245)
...+ +-..|=..++....+-++++|+. .++.++.|++. .+-++..-+-. +-++.+..| ++ ++++.+.
T Consensus 188 ~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~~~~~~iI~vpe~----~a~N~L~ln~~~~~~vvi~~~ 261 (308)
T 3i4a_A 188 TVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDD----IAANCIYLNIPNKGHVLLHRT 261 (308)
T ss_dssp EEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTCSSCCEEEEESSG----GGGCCEEEEETTTEEEEEEEC
T ss_pred EEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhccCCCEEEECChH----HhCCEEEEccCCCCCEEEecC
Confidence 6554 34566677888788888888764 34556777653 13333222212 334446666 32 6788753
No 12
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.64 E-value=58 Score=24.05 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=37.9
Q ss_pred EEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcceeE-Eeecc
Q 025981 116 LTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLVA-GTVNR 188 (245)
Q Consensus 116 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~-~l~~~l~V~v~~-gtvN~ 188 (245)
|..|-+++++...+++. |-.-+.|+|.++..|++ .++++|+|+|.. -|+|.
T Consensus 7 Ik~P~iTEKa~~~~e~~----------------------n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~ 59 (86)
T 3j21_T 7 IIRPVVTEKAISLIEKE----------------------NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLIT 59 (86)
T ss_dssp EEECCCSHHHHHHHHTS----------------------CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEc
Confidence 66788888887777653 33458899999999998 678899999733 34443
No 13
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=39.31 E-value=56 Score=24.07 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=36.8
Q ss_pred EEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCccee-EEeecc
Q 025981 116 LTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV-AGTVNR 188 (245)
Q Consensus 116 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~-~l~~~l~V~v~-~gtvN~ 188 (245)
|..|-+++++...+++. |-.-+.|+|.++..|++ .++++|+|+|. .-|+|.
T Consensus 6 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~ 58 (85)
T 1vq8_S 6 IKHPHVTEKAMNDMDFQ----------------------NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNT 58 (85)
T ss_dssp EEEECCSHHHHHHHHHS----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred eeccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeec
Confidence 56777888877777632 22458999999999998 67788999973 344443
No 14
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=34.02 E-value=2.2e+02 Score=26.36 Aligned_cols=117 Identities=9% Similarity=0.049 Sum_probs=72.7
Q ss_pred CcEEEEeCC--CChhHHHHHHHhhcCCCcEEEEeecC---ceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEE
Q 025981 21 NAYCLVAIG--GSESFYSTFEAELADVFPVVKTSIGG---TRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95 (245)
Q Consensus 21 ~~~~lvp~~--~~~~~~~~i~~~L~~~v~vv~t~I~g---s~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~ 95 (245)
++.+++..+ .++.-.+.+++.|++..+|+-..+.+ .-+=..++.-..+-+++.....++.++.|++. +.++-
T Consensus 262 G~~llvg~s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~---~~~iI 338 (423)
T 1jdw_A 262 GRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA---GWTII 338 (423)
T ss_dssp TTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT---TCEEE
T ss_pred CCEEEEEecccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC---CCEEE
Confidence 445666544 35666778999994225666665543 22223444555555555554545677788765 45665
Q ss_pred EecCCCCc------------eeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEee
Q 025981 96 RIEERLSA------------LGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTI 142 (245)
Q Consensus 96 ~l~~~~~a------------iGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tI 142 (245)
.++..... -.|++..|....|++. -.+.+.+.+++. |.+|+...+
T Consensus 339 ~~p~~~~~~~~~~~~s~~~~~~N~L~inpg~VI~~~-~~~~~~~~L~~~-G~~Vi~v~~ 395 (423)
T 1jdw_A 339 TPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDA-NEVPIQKMFEKL-GITTIKVNI 395 (423)
T ss_dssp CCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEET-TCHHHHHHHHHT-TCEEEEECC
T ss_pred ECCCchhccccccccccccceeeEEEECCCEEEEeC-CCHHHHHHHHHC-CCEEEEecH
Confidence 55542222 5789989866666555 568888999887 999888654
No 15
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=33.59 E-value=1.3e+02 Score=25.49 Aligned_cols=107 Identities=19% Similarity=0.143 Sum_probs=65.7
Q ss_pred EEEeCC--CChhHHHHHHHhh---cCCCcEEEEeecC-ceeEeEEeeeeCCeEE-ecCCCCHHHHHHHHhhCCCCeEEEE
Q 025981 24 CLVAIG--GSESFYSTFEAEL---ADVFPVVKTSIGG-TRIIGRLCAGNKNGLL-LPHTTTDQELQHLRNSLPDQVVVQR 96 (245)
Q Consensus 24 ~lvp~~--~~~~~~~~i~~~L---~~~v~vv~t~I~g-s~lvG~l~~GN~nGll-vp~~~~d~El~~l~~~l~~~v~v~~ 96 (245)
.++..+ .+++..+.+++.| + .+++...+.+ .-+=..++.-..+-++ .|....+.+ ++ +.++-.
T Consensus 126 ~~vg~s~Rt~~~~~~~l~~~l~~~g--~~vi~~~~~~~~HlD~~~~~v~~~~~~~~~~~~~~~~---~~-----~~~ii~ 195 (255)
T 1h70_A 126 FYIGESARTNAEGARQMIAILEKHG--LSGSVVRLEKVLHLKTGLAYLEHNNLLAAGEFVSKPE---FQ-----DFNIIE 195 (255)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHTT--CEEEEEECSSSSSGGGSEEECSTTEEEECGGGTTCGG---GT-----TSEEEE
T ss_pred EEEEEccCCcHHHHHHHHHHHhhCC--CEEEEEECCCCcchhheeeecCCCEEEEECCcCCHhH---hC-----ceEEEE
Confidence 444333 4677789999999 7 7777766653 2223345533344444 444433332 22 356766
Q ss_pred ecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEEeec
Q 025981 97 IEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIA 143 (245)
Q Consensus 97 l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa 143 (245)
++..-..-.|++..| . .++-|...+.+.+.+++. |.+|+...+.
T Consensus 196 ~~~~e~~~~N~l~i~-~-~Vi~~~~~~~~~~~l~~~-g~~vi~v~~~ 239 (255)
T 1h70_A 196 IPEEESYAANCIWVN-E-RVIMPAGYPRTREKIARL-GYRVIEVDTS 239 (255)
T ss_dssp CCGGGGGGGCCEEET-T-EEEEESSCHHHHHHHHTT-TCEEEEECCH
T ss_pred CCCcccccccEEEEC-C-EEEeCCCCHHHHHHHHHC-CCeEEEechH
Confidence 664334667888888 3 445556678888888876 9998886543
No 16
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=33.31 E-value=64 Score=23.19 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=56.4
Q ss_pred EEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCCceEEE
Q 025981 61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ 140 (245)
Q Consensus 61 ~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgVeV~~~ 140 (245)
.+.+|| +|..+++++|..+=...+.-..+....++.+ --+|+|.-.-.+++.+.++..=|..
T Consensus 10 ~l~V~n-----lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~---- 71 (115)
T 3lqv_A 10 ILYIRN-----LPYKITAEEMYDIFGKYGPIRQIRVGNTPET---------RGTAYVVYEDIFDAKNAVDHLSGFN---- 71 (115)
T ss_dssp EEEEES-----CCTTCCHHHHHHHHHTTSCEEEEEEECSTTT---------TTCEEEEESSHHHHHHHHHHHTTCB----
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---------CcEEEEEECCHHHHHHHHHHcCCCE----
Confidence 355666 7999999999877655332234444433322 2478888877777777776554443
Q ss_pred eecCceeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcc
Q 025981 141 TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVP 180 (245)
Q Consensus 141 tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~ 180 (245)
+.|..+.=.++--...--=.++..++++++++.+-+|++
T Consensus 72 -~~g~~l~v~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 72 -VSNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp -SSSCBCEEEECCHHHHTTTSCHHHHHHHHHHHHHHHCCC
T ss_pred -ECCeEEEEEEecCChhhhhhhHhHhHHHHHHHHHHhCCC
Confidence 233333222221111111124455677777777777765
No 17
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.14 E-value=1.5e+02 Score=21.61 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=36.7
Q ss_pred EEeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHh
Q 025981 61 RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIAD 131 (245)
Q Consensus 61 ~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d 131 (245)
.+.+|| +|..+++++|+.+-+....-.+|..+.. -.+|+|.-+-.+++.+.++.
T Consensus 17 ~l~V~n-----Lp~~~te~~L~~~F~~fG~V~~v~i~~~------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 17 VVHVRG-----LCESVVEADLVEALEKFGTICYVMMMPF------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp EEEEES-----CCSSCCHHHHHHHHTTTSCEEEEEEETT------------TTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEECC------------CCEEEEEECCHHHHHHHHHH
Confidence 356676 8999999999987655332234444432 24799988877777777764
No 18
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=31.82 E-value=69 Score=23.92 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=34.0
Q ss_pred EEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCccee
Q 025981 116 LTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV 182 (245)
Q Consensus 116 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~-~l~~~l~V~v~ 182 (245)
|..|-+++++...+++. |-.-+.|+|.++..|++ .++.+|+|+|.
T Consensus 11 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~eIK~AVE~lf~VkV~ 56 (93)
T 3r8s_T 11 LRAPHVSEKASTAMEKS----------------------NTIVLKVAKDATKAEIKAAVQKLFEVEVE 56 (93)
T ss_dssp EEEECCSHHHHHHHHTT----------------------SEEEEEECSSCCHHHHHHHHHHHSCCCCC
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHcCCceE
Confidence 56677777776666551 33448899999999998 67889999973
No 19
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=30.36 E-value=59 Score=30.02 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=92.9
Q ss_pred eeeEEEecCcEEEEeCCCChhHHHHHHHhh--cCCCcEEEEeecCceeEeEEeeeeCCeEEecCCCCHHHHHHHHhhCCC
Q 025981 13 VGVFSKLTNAYCLVAIGGSESFYSTFEAEL--ADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD 90 (245)
Q Consensus 13 IGvf~~~t~~~~lvp~~~~~~~~~~i~~~L--~~~v~vv~t~I~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~ 90 (245)
|+|+.+|.-. ++.-|+ +.+.+.+++.+ + +||+...-.| +.|++..| .+.=++.|-+.+..
T Consensus 119 I~V~tTC~~e--~IGdDi-~~v~~~~~~~~~~~--~pVi~v~t~g--f~g~~~~G-----------~~~a~~al~~~~~~ 180 (437)
T 3aek_A 119 LFLVGSCPSE--VLKLDL-DRAAERLSGLHAPH--VRVYSYTGSG--LDTTFTQG-----------EDTCLAAMVPTLDT 180 (437)
T ss_dssp EEEEECHHHH--HTTCCH-HHHHHHHHHHSTTT--CEEEEEECCT--TTCCTTHH-----------HHHHHHHHGGGSCB
T ss_pred EEEEcCCHHH--HhhcCH-HHHHHHHHHhcCCC--CeEEEeECCC--CCCcHHHH-----------HHHHHHHHHHHhcc
Confidence 4555544322 334333 45667777777 6 8888886654 23433333 23334444444321
Q ss_pred CeEEEEecCCCCceeeEEEeeCceEEEecCCCh---hHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCe-eeeCCCCC
Q 025981 91 QVVVQRIEERLSALGNCIACNDHVALTHTDLDR---ETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTS 166 (245)
Q Consensus 91 ~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~---~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-~LV~p~~~ 166 (245)
. .+.++-|+++ +.. ..++.+=+.+|+++....=++ ++==.-.+.+..- ++++|..
T Consensus 181 ~------------------~~~~VNilG~-~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~~~A~~niv~~~~~- 239 (437)
T 3aek_A 181 T------------------EAAELIVVGA-LPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAVGPNTRFILAQPFL- 239 (437)
T ss_dssp C------------------CCCCEEEESC-CCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCBCTTCEEEESSTTC-
T ss_pred c------------------CCCcEEEEeC-CChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhhhcCcEEEEECccH-
Confidence 1 0233444443 333 345555567889987533222 2211222334443 4566766
Q ss_pred HHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHHHhhhh
Q 025981 167 IEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDS 243 (245)
Q Consensus 167 ~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~ 243 (245)
..-.+.| +-+|+|..... .| .|.+-|..-+..|.+.||.+....+.+.++.|+.+.+.
T Consensus 240 ~~~A~~L-e~~GiP~i~~~----~P--------------~G~~~T~~~l~~la~~~g~~~~~~e~~i~~e~~~~~~~ 297 (437)
T 3aek_A 240 GETTGAL-ERRGAKRIAAP----FP--------------FGEEGTTLWLKAVADAYGVSAEKFEAVTAAPRARAKKA 297 (437)
T ss_dssp HHHHHHH-HHTTCEECCCC----CS--------------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCeEecC----CC--------------cCHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHH
Confidence 6667788 88899974432 22 46777999999999999986520123334455555444
No 20
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.10 E-value=98 Score=25.41 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=41.0
Q ss_pred eEEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCccee-EEeecc
Q 025981 114 VALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLV-AGTVNR 188 (245)
Q Consensus 114 ~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~-~l~~~l~V~v~-~gtvN~ 188 (245)
-.|..|-++++....+++. |-.-+.|++.++..|++ .++++|+|.|. +-|+|.
T Consensus 75 ~iIk~PliTEKa~~~~E~~----------------------n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~ 129 (156)
T 2zkr_s 75 AIIKFPLTTESAMKKIEDN----------------------NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIR 129 (156)
T ss_dssp -CEEEECCSHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred HhHhcccccHHHHHHHHhC----------------------CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEc
Confidence 3677899999999999882 23568999999999987 67889999973 344443
No 21
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=28.68 E-value=47 Score=24.98 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.6
Q ss_pred cCCeeeeCCCCCHHHHH-HHhhhcCccee-EEeec
Q 025981 155 SNRGGLVHPHTSIEDLD-ELSTLLQVPLV-AGTVN 187 (245)
Q Consensus 155 Nn~G~LV~p~~~~eEl~-~l~~~l~V~v~-~gtvN 187 (245)
|+.-+.|+|.++..|++ .++++|+|+|. .-|+|
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~ 57 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMN 57 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEE
Confidence 45678999999999998 67889999973 34443
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=25.85 E-value=1.6e+02 Score=21.34 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=41.0
Q ss_pred EeeeeCCeEEecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhhhCC
Q 025981 62 LCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGV 135 (245)
Q Consensus 62 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~LgV 135 (245)
+.+|| ||..+++++|+.+=...+.-..+.++.++...- -+|+|.-.-.+++.+.|+..=|.
T Consensus 8 lfV~n-----Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~k--------g~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 8 IFIKN-----LDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--------GYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp EEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEE--------EEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEECC-----CCCCCCHHHHHHHHhccCCEEEEEEeecCCCCC--------ceEEEEECCHHHHHHHHHHcCCC
Confidence 55555 799999999998776644334555554443221 37899988888888888765443
No 23
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=25.81 E-value=1.7e+02 Score=27.07 Aligned_cols=99 Identities=23% Similarity=0.327 Sum_probs=62.2
Q ss_pred HHHHHHHhhCCCCeEEEEecCCCCc---eeeEEEeeCc----------eEEE----------------ecCCChhHHHHH
Q 025981 79 QELQHLRNSLPDQVVVQRIEERLSA---LGNCIACNDH----------VALT----------------HTDLDRETEEMI 129 (245)
Q Consensus 79 ~El~~l~~~l~~~v~v~~l~~~~~a---iGn~i~~ND~----------~alV----------------~p~l~~~~~~~I 129 (245)
++.+..++.|+.++.+..++...+= .|=..+.|++ .+.+ +-+.+...-+.|
T Consensus 67 ~~~~~a~~~l~~~v~~~~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~v 146 (383)
T 3h7c_X 67 AQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKI 146 (383)
T ss_dssp GGHHHHHHHSCTTSEEEECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHHH
T ss_pred HHHHHHHHhccCCcEEEEcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHHH
Confidence 3556677777777888777755432 2444444443 2333 335667778889
Q ss_pred HhhhCCceEEEeecCceeeeeEEEEcCCe-------eee----CCCCCHHHHH-HHhhhcCcc
Q 025981 130 ADVLGVEVFRQTIAGNILVGSYCSFSNRG-------GLV----HPHTSIEDLD-ELSTLLQVP 180 (245)
Q Consensus 130 ~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------~LV----~p~~~~eEl~-~l~~~l~V~ 180 (245)
.+.+|++.++..+ .+=|=..-.|-.| ||+ +|..|++|++ +|++.||+.
T Consensus 147 ~~~~g~~~~~~~l---VlEGGsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~ 206 (383)
T 3h7c_X 147 LALERIPRFQHSM---ILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQ 206 (383)
T ss_dssp HHHHTCCEEEEEE---ECCGGGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHhCCCcccCCe---eecCCcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCc
Confidence 9999999887542 1111112224444 555 5889999998 599999997
No 24
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.67 E-value=1.3e+02 Score=24.32 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=39.5
Q ss_pred EEEecCCChhHHHHHHhhhCCceEEEeecCceeeeeEEEEcCCeeeeCCCCCHHHHH-HHhhhcCcceeE-Eeecc
Q 025981 115 ALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLVA-GTVNR 188 (245)
Q Consensus 115 alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~~~eEl~-~l~~~l~V~v~~-gtvN~ 188 (245)
.|..|-++++....+++. |-.-+.|++.++..|++ .++.+|+|.|.. -|+|.
T Consensus 62 IIk~PliTEKa~~~~E~~----------------------N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~ 115 (142)
T 3u5e_X 62 VIEQPITSETAMKKVEDG----------------------NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVR 115 (142)
T ss_dssp HEEEECCCHHHHHHHHHH----------------------CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEEC
T ss_pred hhhcCCcCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEc
Confidence 367899999998888873 33348899999999997 678899999733 34443
No 25
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.63 E-value=1.5e+02 Score=21.13 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=32.3
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhh
Q 025981 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADV 132 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~ 132 (245)
||..+++++|+.+-.....-..+.++.+ -+|+|--.-.+++.+.|+..
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~-------------g~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRD-------------GTGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETT-------------TEEEEEESSHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecC-------------CEEEEEECCHHHHHHHHHHH
Confidence 6889999999877655332233333332 68888888777777777653
No 26
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2
Probab=23.64 E-value=1.3e+02 Score=26.82 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=62.0
Q ss_pred cCCCCHHHHHHHHhhCCCCeEEEEecCCCC--ce-eeEEEeeCceEEEecCCChhHHHHHHhhh-CCceEEEeecCc---
Q 025981 73 PHTTTDQELQHLRNSLPDQVVVQRIEERLS--AL-GNCIACNDHVALTHTDLDRETEEMIADVL-GVEVFRQTIAGN--- 145 (245)
Q Consensus 73 p~~~~d~El~~l~~~l~~~v~v~~l~~~~~--ai-Gn~i~~ND~~alV~p~l~~~~~~~I~d~L-gVeV~~~tIag~--- 145 (245)
+..++.+.++.|++.|+.+..+..++...+ =+ ..+..+.+..++++|+..+.. .+.+.| +.+++..+ .+.
T Consensus 195 s~Rt~~~~ie~l~~~l~~~~~v~~~~~~~~~~HlDt~~~~v~~~~vl~~~~~~~~~--~~~~~L~~~~iI~~~-~~~~~~ 271 (348)
T 1bwd_A 195 SDSGNELGAKWLQSAVGDTYTVHPCRKLYASTHVDSTIVPLRPGLVLTNPSRVNDE--NMPDFLRSWENITCP-ELVDIG 271 (348)
T ss_dssp BTTBCHHHHHHHHHHHCTTSEEEEESSSCCSSCGGGTEEEEETTEEEECTTTCCTT--TSCGGGTTSEEEECC-CCCCCC
T ss_pred cccCCHHHHHHHHHHhcCCcEEEEecCCCCCcchhheEEecCCCEEEEeCCCCCcH--HHHHHhcCCEEEECC-Cccccc
Confidence 466789999999999865666666664311 11 256667788888888764331 122333 46676655 111
Q ss_pred ---------eeeeeEEEEcCCeeeeCCCCCHHHHHHHhhhcCcce
Q 025981 146 ---------ILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPL 181 (245)
Q Consensus 146 ---------~lVGs~~v~Nn~G~LV~p~~~~eEl~~l~~~l~V~v 181 (245)
..-|+.+..=++|.++.|....+-.+.|++. |.++
T Consensus 272 ~~~~~~~~~~w~~~N~l~i~~~~Vi~~~~~~~~~~~L~~~-G~~v 315 (348)
T 1bwd_A 272 FTGDKPHCSVWIGMNLLVVRPDLAVVDRRQTALIRLLEKH-GMNV 315 (348)
T ss_dssp CCSSSCSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEE
T ss_pred cccccccccccceeeEEEEcCCEEEEcCCCHHHHHHHHHC-CCEE
Confidence 0114444422344555556677777888876 7665
No 27
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.39 E-value=1.8e+02 Score=19.78 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=32.0
Q ss_pred ecCCCCHHHHHHHHhhCCCCeEEEEecCCCCceeeEEEeeCceEEEecCCChhHHHHHHhh
Q 025981 72 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADV 132 (245)
Q Consensus 72 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~ND~~alV~p~l~~~~~~~I~d~ 132 (245)
+|..+++++|+.+-+....-..+..... +|+|.-.-.++..+.++..
T Consensus 18 Lp~~~t~~~l~~~F~~~G~v~~v~~~~~--------------~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEEYGPVIECDIVKD--------------YAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CCSSCCHHHHHHHHHTTSCCCEEEECSS--------------EEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEECC--------------EEEEEECCHHHHHHHHHHh
Confidence 5889999999877665433244444421 8999888777777777643
No 28
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=21.22 E-value=1.1e+02 Score=29.00 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=45.0
Q ss_pred eeeCCCCCHHHHHHHhhhcCcceeEEeeccCcceeeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCccCCCchhHHHHHH
Q 025981 159 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRK 238 (245)
Q Consensus 159 ~LV~p~~~~eEl~~l~~~l~V~v~~gtvN~G~~~VGsgivaNd~galvg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~ 238 (245)
++++|.....-.+.|++-+|+|..... .| +|.+-|..-+..|.++||.+. .......|.
T Consensus 287 iv~~~~~~~~~A~~Le~r~GiP~i~~~----~P--------------iG~~~T~~~L~~la~~~g~~~---~~~i~~er~ 345 (519)
T 1qgu_B 287 LLLQPWQLLKSKKVVQEMWNQPATEVA----IP--------------LGLAATDELLMTVSQLSGKPI---ADALTLERG 345 (519)
T ss_dssp EESSTTTCHHHHHHHHHTSCCCCCCCC----CC--------------BSHHHHHHHHHHHHHHHCCCC---CHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHcCCCeEecC----CC--------------cchHHHHHHHHHHHHHHCCCc---HHHHHHHHH
Confidence 667888788777899999999984322 22 367779999999999999864 222344444
Q ss_pred Hhhhh
Q 025981 239 SLIDS 243 (245)
Q Consensus 239 ~~~~~ 243 (245)
.+++.
T Consensus 346 ~~~~~ 350 (519)
T 1qgu_B 346 RLVDM 350 (519)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 29
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.95 E-value=97 Score=23.06 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.6
Q ss_pred eeeeCCCCCHHHHH-HHhhhcCccee
Q 025981 158 GGLVHPHTSIEDLD-ELSTLLQVPLV 182 (245)
Q Consensus 158 G~LV~p~~~~eEl~-~l~~~l~V~v~ 182 (245)
-+.|+|.++..|++ .++.+++|+|.
T Consensus 25 ~F~V~~~AnK~qIK~aVe~lf~VkV~ 50 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETAFKVKVV 50 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCHHHHHHHHHHHhCCcee
Confidence 47899999999998 67889999973
No 30
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=20.68 E-value=76 Score=23.51 Aligned_cols=67 Identities=9% Similarity=0.167 Sum_probs=37.2
Q ss_pred eeeCCCCCHHHHHHHhhhcCccee--EEeeccCcceeeeEEEE-----cCce--EEEcCCCCHHHHHHHHHhhCCcc
Q 025981 159 GLVHPHTSIEDLDELSTLLQVPLV--AGTVNRGSEVIAAGLTV-----NDWT--AFCGSDTTATELSVIESVFKLRE 226 (245)
Q Consensus 159 ~LV~p~~~~eEl~~l~~~l~V~v~--~gtvN~G~~~VGsgiva-----Nd~g--alvg~~tT~~El~~Ie~~l~v~~ 226 (245)
++++|+.++++++.+-+-++--+. -|+| ....-.|-==+| ..+| +++.-++++.-+..+++.|++.+
T Consensus 8 ~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i-~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~~~ 83 (101)
T 1cqm_A 8 IVLNPNLDQSQLALEKEIIQRALENYGARV-EKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRD 83 (101)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCEE-EEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHHTST
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEE-EEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHHHhcCCc
Confidence 589999999999866554321110 0111 111111111111 2233 35566777888899999998876
Done!