Your job contains 1 sequence.
>025982
MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ
AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG
KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP
HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI
TYAKK
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025982
(245 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2061976 - symbol:U1A "spliceosomal protein U1A... 843 3.4e-84 1
UNIPROTKB|A2Y0J7 - symbol:OsI_18512 "U1 small nuclear rib... 751 1.9e-74 1
UNIPROTKB|Q0DKM4 - symbol:LOC_Os05g06280 "U1 small nuclea... 751 1.9e-74 1
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 577 5.3e-56 1
TAIR|locus:2007417 - symbol:AT1G06960 species:3702 "Arabi... 559 4.3e-54 1
UNIPROTKB|Q06AA4 - symbol:SNRPA "U1 small nuclear ribonuc... 358 2.0e-53 2
RGD|1307416 - symbol:Snrpa "small nuclear ribonucleoprote... 358 2.0e-53 2
UNIPROTKB|F1M6Z8 - symbol:Snrpa "Protein Snrpa" species:1... 358 2.0e-53 2
UNIPROTKB|Q2KIR1 - symbol:SNRPA "U1 small nuclear ribonuc... 358 2.0e-53 2
MGI|MGI:1855690 - symbol:Snrpa "small nuclear ribonucleop... 342 9.9e-52 2
UNIPROTKB|B8AM21 - symbol:OsI_11177 "U2 small nuclear rib... 525 1.7e-50 1
FB|FBgn0003449 - symbol:snf "sans fille" species:7227 "Dr... 335 2.3e-50 2
UNIPROTKB|Q10MR0 - symbol:LOC_Os03g18720 "U2 small nuclea... 522 3.6e-50 1
ZFIN|ZDB-GENE-060616-2 - symbol:snrpb2 "small nuclear rib... 324 2.0e-49 2
UNIPROTKB|G5E5Y0 - symbol:SNRPB2 "Uncharacterized protein... 328 2.6e-49 2
UNIPROTKB|E1C0I4 - symbol:SNRPB2 "Uncharacterized protein... 499 9.8e-48 1
MGI|MGI:104805 - symbol:Snrpb2 "U2 small nuclear ribonucl... 495 2.6e-47 1
RGD|1310194 - symbol:Snrpb2 "small nuclear ribonucleoprot... 494 3.3e-47 1
UNIPROTKB|P08579 - symbol:SNRPB2 "U2 small nuclear ribonu... 493 4.2e-47 1
WB|WBGene00004385 - symbol:rnp-2 species:6239 "Caenorhabd... 327 5.3e-47 2
UNIPROTKB|E2R2A8 - symbol:SNRPB2 "Uncharacterized protein... 492 5.4e-47 1
WB|WBGene00004386 - symbol:rnp-3 species:6239 "Caenorhabd... 330 1.6e-45 2
UNIPROTKB|Q21323 - symbol:rnp-3 "Protein RNP-3" species:6... 330 1.6e-45 2
DICTYBASE|DDB_G0288391 - symbol:snrpB2 "U2 small nuclear ... 433 9.6e-41 1
ASPGD|ASPL0000053720 - symbol:AN0109 species:162425 "Emer... 406 7.0e-38 1
POMBASE|SPBC4B4.07c - symbol:usp102 "U1 snRNP-associated ... 373 2.2e-34 1
UNIPROTKB|G4MSP6 - symbol:MGG_07085 "Small nuclear ribonu... 372 2.8e-34 1
ZFIN|ZDB-GENE-030131-2841 - symbol:snrpa "small nuclear r... 368 7.4e-34 1
UNIPROTKB|P09012 - symbol:SNRPA "U1 small nuclear ribonuc... 362 3.2e-33 1
GENEDB_PFALCIPARUM|MAL13P1.35 - symbol:MAL13P1.35 "u1 sma... 239 1.1e-31 2
UNIPROTKB|C0H5A4 - symbol:MAL13P1.35 "U1 small nuclear ri... 239 1.1e-31 2
UNIPROTKB|J9NXJ9 - symbol:SNRPA "Uncharacterized protein"... 340 6.9e-31 1
UNIPROTKB|J9NSX4 - symbol:LOC100683259 "Uncharacterized p... 333 3.8e-30 1
CGD|CAL0004764 - symbol:orf19.7375 species:5476 "Candida ... 226 2.5e-28 2
UNIPROTKB|Q5A4F9 - symbol:USA1 "Putative uncharacterized ... 226 2.5e-28 2
UNIPROTKB|F1PFC6 - symbol:SNRPA "Uncharacterized protein"... 174 6.6e-21 2
ASPGD|ASPL0000027676 - symbol:AN5779 species:162425 "Emer... 245 8.0e-21 1
UNIPROTKB|G4MYZ3 - symbol:MGG_04351 "U2 small nuclear rib... 222 2.2e-18 1
POMBASE|SPBC8D2.09c - symbol:msl1 "U2 snRNP-associated pr... 208 6.7e-17 1
SGD|S000001448 - symbol:MSL1 "U2B component of U2 snRNP" ... 148 1.5e-10 1
UNIPROTKB|Q8WN55 - symbol:PTBP1 "Polypyrimidine tract-bin... 160 3.9e-10 1
UNIPROTKB|P26599 - symbol:PTBP1 "Polypyrimidine tract-bin... 160 3.9e-10 1
CGD|CAL0004460 - symbol:orf19.4748 species:5476 "Candida ... 140 1.1e-09 1
UNIPROTKB|Q5AQ60 - symbol:MSL1 "Putative uncharacterized ... 140 1.1e-09 1
RGD|62047 - symbol:Ptbp1 "polypyrimidine tract binding pr... 98 3.5e-08 2
UNIPROTKB|F1LM18 - symbol:Ptbp1 "Polypyrimidine tract-bin... 98 8.9e-08 2
UNIPROTKB|Q6P736 - symbol:Ptbp1 "Polypyrimidine tract bin... 98 9.0e-08 2
UNIPROTKB|J9P5T5 - symbol:PTBP1 "Uncharacterized protein"... 98 1.1e-07 2
UNIPROTKB|F1S6R7 - symbol:PTBP1 "Polypyrimidine tract-bin... 98 1.1e-07 2
UNIPROTKB|F1PCJ7 - symbol:PTBP1 "Uncharacterized protein"... 98 1.2e-07 2
UNIPROTKB|F1P5K0 - symbol:PTBP1 "Uncharacterized protein"... 97 1.3e-07 2
UNIPROTKB|E1BVR1 - symbol:PTBP1 "Uncharacterized protein"... 97 1.3e-07 2
UNIPROTKB|Q29099 - symbol:PTBP1 "Polypyrimidine tract-bin... 98 1.5e-07 2
POMBASE|SPBC29A3.07c - symbol:sab14 "U2 snRNP-associated ... 121 1.9e-07 1
TAIR|locus:2135605 - symbol:AT4G12640 species:3702 "Arabi... 108 8.4e-07 2
MGI|MGI:1923334 - symbol:Ptbp3 "polypyrimidine tract bind... 96 8.6e-07 2
RGD|621671 - symbol:Ptbp3 "polypyrimidine tract binding p... 93 1.2e-06 2
UNIPROTKB|D4AB53 - symbol:Ptbp1 "Polypyrimidine tract-bin... 135 1.5e-06 1
ZFIN|ZDB-GENE-050522-492 - symbol:ptbp1a "polypyrimidine ... 94 1.5e-06 2
MGI|MGI:97791 - symbol:Ptbp1 "polypyrimidine tract bindin... 132 3.4e-06 1
ZFIN|ZDB-GENE-050320-141 - symbol:ptbp2a "polypyrimidine ... 102 4.3e-06 2
ZFIN|ZDB-GENE-060810-49 - symbol:ptbp2b "polypyrimidine t... 96 4.8e-06 2
UNIPROTKB|O95758 - symbol:PTBP3 "Polypyrimidine tract-bin... 93 5.7e-06 2
WB|WBGene00016808 - symbol:C50D2.5 species:6239 "Caenorha... 108 6.0e-06 1
UNIPROTKB|F1PXP9 - symbol:PTBP3 "Uncharacterized protein"... 91 1.1e-05 2
UNIPROTKB|F1S549 - symbol:LOC100515203 "Uncharacterized p... 88 1.2e-05 2
UNIPROTKB|I3LP39 - symbol:LOC100515203 "Uncharacterized p... 88 1.2e-05 2
UNIPROTKB|I3LDE4 - symbol:LOC100515203 "Uncharacterized p... 88 1.3e-05 2
UNIPROTKB|F1MPG6 - symbol:F1MPG6 "Uncharacterized protein... 90 1.4e-05 2
UNIPROTKB|F1NRD6 - symbol:PTBP2 "Uncharacterized protein"... 88 2.0e-05 2
UNIPROTKB|Q06A95 - symbol:ROD1 "ROD1" species:9823 "Sus s... 90 2.3e-05 2
UNIPROTKB|A8YXY5 - symbol:PTBP1 "PTBP1 protein" species:9... 98 2.3e-05 2
UNIPROTKB|Q9UKA9 - symbol:PTBP2 "Polypyrimidine tract-bin... 88 2.5e-05 2
MGI|MGI:1860489 - symbol:Ptbp2 "polypyrimidine tract bind... 88 2.5e-05 2
RGD|1359267 - symbol:Ptbp2 "polypyrimidine tract binding ... 88 2.5e-05 2
UNIPROTKB|E2RSK4 - symbol:PTBP2 "Uncharacterized protein"... 88 2.5e-05 2
UNIPROTKB|B4DSS8 - symbol:PTBP2 "Polypyrimidine tract-bin... 88 2.7e-05 2
SGD|S000000323 - symbol:MUD1 "U1 snRNP A protein" species... 101 3.1e-05 2
ZFIN|ZDB-GENE-030131-9796 - symbol:ptbp1b "polypyrimidine... 92 3.6e-05 2
UNIPROTKB|G4MTV6 - symbol:MGG_01579 "Pre-mRNA branch site... 98 8.1e-05 1
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 87 8.9e-05 2
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p... 116 0.00010 1
UNIPROTKB|F1NFC5 - symbol:RBM41 "Uncharacterized protein"... 118 0.00011 1
FB|FBgn0035692 - symbol:CG13298 species:7227 "Drosophila ... 96 0.00014 1
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 96 0.00014 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 96 0.00014 1
TAIR|locus:2177033 - symbol:AT5G12190 species:3702 "Arabi... 96 0.00014 1
ASPGD|ASPL0000065410 - symbol:AN7456 species:162425 "Emer... 108 0.00015 1
UNIPROTKB|F1NIP6 - symbol:MYEF2 "Uncharacterized protein"... 84 0.00016 2
UNIPROTKB|Q5ZHY2 - symbol:MYEF2 "Uncharacterized protein"... 84 0.00021 2
UNIPROTKB|E1BW94 - symbol:SF3B14 "Uncharacterized protein... 94 0.00023 1
UNIPROTKB|Q2KIQ7 - symbol:SF3B14 "Uncharacterized protein... 94 0.00023 1
UNIPROTKB|E2RRA3 - symbol:SF3B14 "Uncharacterized protein... 94 0.00023 1
UNIPROTKB|Q9Y3B4 - symbol:SF3B14 "Pre-mRNA branch site pr... 94 0.00023 1
UNIPROTKB|F2Z5F1 - symbol:LOC100521960 "Uncharacterized p... 94 0.00023 1
MGI|MGI:1913305 - symbol:0610009D07Rik "RIKEN cDNA 061000... 94 0.00023 1
ZFIN|ZDB-GENE-040625-36 - symbol:sf3b14 "splicing factor ... 94 0.00023 1
ZFIN|ZDB-GENE-091116-1 - symbol:ptbp3 "polypyrimidine tra... 91 0.00029 2
UNIPROTKB|D4AB08 - symbol:Myef2 "Protein Myef2" species:1... 89 0.00030 2
UNIPROTKB|D4A1T2 - symbol:Myef2 "Protein Myef2" species:1... 89 0.00031 2
WARNING: Descriptions of 18 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
Identities = 166/250 (66%), Positives = 190/250 (76%)
Query: 1 MEPEVANQG--NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHK 58
ME + ANQG +E+SPN TIYINNLNEKVK+D+LK+SL+AVF QFG ILEILAFKT KHK
Sbjct: 1 MEMQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHK 60
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXX 118
GQAW+VF + SA+ A+ KM FPFYDK MRIQYAKTKSD++AKADGTFVP
Sbjct: 61 GQAWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEE 120
Query: 119 XXXXXX--DQH-DANQAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
DQH D+ Q GM +N PPLSQ+PYPGG K +PEAPAPPNNILF
Sbjct: 121 KGGGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILF 180
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
VQN+PH+TTPM LQM F Q+ GFKEVRM+EAKPGIAFVE+ DEMQ+TVAMQ LQ KI Q
Sbjct: 181 VQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQQ 240
Query: 236 QQLLITYAKK 245
Q+LITYAKK
Sbjct: 241 NQMLITYAKK 250
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 153/244 (62%), Positives = 180/244 (73%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A + N PN TIYINNLNEK+K+++LK+SL AVF QFG IL++LAFKTLKHKGQAW+VF
Sbjct: 13 APEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVF 72
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXX---XXX 122
+DVASAT A++ MQ FPF++KPMRIQYAKTKSDIIAKADGTFVP
Sbjct: 73 EDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQK 132
Query: 123 XXDQHDANQAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
HD +Q G+G+N PPLSQ+P+ G K ++PE P NNILFVQN+PH+
Sbjct: 133 REQHHDVSQVGLGVN--AYPGVYGAPPLSQLPFAGAQKVMMPEIIVP-NNILFVQNLPHE 189
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLIT 241
TTPM LQM F Q+PGFKEVRMVEAKPGIAFVEYGDE QAT AM LQ KI + Q+LI+
Sbjct: 190 TTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLIS 249
Query: 242 YAKK 245
YAKK
Sbjct: 250 YAKK 253
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 153/244 (62%), Positives = 180/244 (73%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A + N PN TIYINNLNEK+K+++LK+SL AVF QFG IL++LAFKTLKHKGQAW+VF
Sbjct: 13 APEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVF 72
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXX---XXX 122
+DVASAT A++ MQ FPF++KPMRIQYAKTKSDIIAKADGTFVP
Sbjct: 73 EDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQK 132
Query: 123 XXDQHDANQAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
HD +Q G+G+N PPLSQ+P+ G K ++PE P NNILFVQN+PH+
Sbjct: 133 REQHHDVSQVGLGVN--AYPGVYGAPPLSQLPFAGAQKVMMPEIIVP-NNILFVQNLPHE 189
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLIT 241
TTPM LQM F Q+PGFKEVRMVEAKPGIAFVEYGDE QAT AM LQ KI + Q+LI+
Sbjct: 190 TTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLIS 249
Query: 242 YAKK 245
YAKK
Sbjct: 250 YAKK 253
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 116/237 (48%), Positives = 157/237 (66%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI NLNE++K ++LK+SL+ +F QFG IL+++A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
A AV +MQ FPFYDKPMR+QYAK KSD +AKA+GTFVP +
Sbjct: 65 AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRP 124
Query: 131 QAGMGLNPXXXXXXXXTP-PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
G + P P Q P G +++ PPNNILF+QN+PH+TT M LQ
Sbjct: 125 NTANGPSANGPSANNGVPAPSFQ---PSGQETM------PPNNILFIQNLPHETTSMMLQ 175
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
+ F Q+PGFKE+RM++AKPGIAFVEY D++QA++AMQ LQ KI Q ++I++AKK
Sbjct: 176 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>TAIR|locus:2007417 [details] [associations]
symbol:AT1G06960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 GO:GO:0000398
GO:GO:0017069 GO:GO:0005686 EMBL:AC067971 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:AY080742 EMBL:AY142487 IPI:IPI00542329
IPI:IPI00548592 IPI:IPI00846257 PIR:C86204 RefSeq:NP_001077472.1
RefSeq:NP_172177.3 RefSeq:NP_850936.1 UniGene:At.42321
ProteinModelPortal:Q8H1S6 SMR:Q8H1S6 STRING:Q8H1S6
EnsemblPlants:AT1G06960.1 GeneID:837206 KEGG:ath:AT1G06960
GeneFarm:4538 TAIR:At1g06960 InParanoid:Q8H1S6 OMA:DIACATQ
PhylomeDB:Q8H1S6 Genevestigator:Q8H1S6 Uniprot:Q8H1S6
Length = 229
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 111/236 (47%), Positives = 156/236 (66%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI ++NEK+K ++LK+SL+ +F QFG +L+++A KT K +GQAW+VF +V +
Sbjct: 5 DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
A+ AV +MQ FPFYDKPMRIQYAK+KSD + KA+G+FVP +
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124
Query: 131 QAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q M N PP P G ++ PPNNILF+ N+P +T M LQ+
Sbjct: 125 QPSMP-NGATTQNGMPVPPFQ----PSGQDTM------PPNNILFIHNLPIETNSMMLQL 173
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
F Q+PGFKE+RM+EAKPGIAFVEY D++Q+++AMQ+LQ KI Q +++++AKK
Sbjct: 174 LFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 358 (131.1 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 68/98 (69%), Positives = 84/98 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 102
Score = 212 (79.7 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PP Q+ PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 186 PP-QQL-MPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
Score = 56 (24.8 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
PP IP PG A IP PP ++ Q P
Sbjct: 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 197
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 358 (131.1 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 68/98 (69%), Positives = 84/98 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 102
Score = 212 (79.7 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PP Q+ PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 PP-QQL-MPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 242
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 281
Score = 56 (24.8 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
PP IP PG A IP PP ++ Q P
Sbjct: 164 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 196
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 358 (131.1 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 68/98 (69%), Positives = 84/98 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 9 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 68
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV
Sbjct: 69 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 106
Score = 212 (79.7 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PP Q+ PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 189 PP-QQL-MPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 246
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 247 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 285
Score = 56 (24.8 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
PP IP PG A IP PP ++ Q P
Sbjct: 168 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 200
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 358 (131.1 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 68/98 (69%), Positives = 84/98 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 102
Score = 212 (79.7 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PP Q+ PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 186 PP-QQL-MPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
Score = 54 (24.1 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
PP IP PG A +P PP ++ Q P
Sbjct: 165 PPPGMIPPPGLAPGQLPPGAMPPQQLMPGQMPP 197
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 342 (125.4 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 65/98 (66%), Positives = 81/98 (82%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + +K +GQA+++FK+V S
Sbjct: 11 ETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTS 70
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+V
Sbjct: 71 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYV 108
Score = 212 (79.7 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PP Q+ PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 191 PP-QQL-MPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 248
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 249 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
Score = 56 (24.8 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
PP IP PG A IP PP ++ Q P
Sbjct: 170 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 202
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 114/238 (47%), Positives = 152/238 (63%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+ NLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQ-HDA 129
AT A +Q F FY K MR+QYAKTKSD +A DG+ P + +A
Sbjct: 65 ATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAEEA 124
Query: 130 NQAGMGLNPXXXXXXXXTP-PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
Q+G P T S++ G S E PAPPNNILF+QN+P +TT M L
Sbjct: 125 QQSG----PNAAAQSNGTGYQASRL----GKTS--QEPPAPPNNILFIQNLPAETTSMML 174
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
Q+ F Q+PGF+EVRM+EAKPGIAFVEY D+ Q+ VAMQ+LQ KI + I+YAKK
Sbjct: 175 QILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 335 (123.0 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 61/97 (62%), Positives = 82/97 (84%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK GTF
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTF 98
Score = 206 (77.6 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 44/93 (47%), Positives = 59/93 (63%)
Query: 156 PGGAKSVIPEAPA--PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
P A++ P A PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFV
Sbjct: 124 PSSAENSNPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFV 183
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
E+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 184 EFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>UNIPROTKB|Q10MR0 [details] [associations]
symbol:LOC_Os03g18720 "U2 small nuclear ribonucleoprotein
B''" species:39947 "Oryza sativa Japonica Group" [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0015030 "Cajal body" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
EMBL:DP000009 EMBL:AP008209 GO:GO:0015030 GO:GO:0000398
EMBL:CM000140 GO:GO:0017069 GO:GO:0005686 eggNOG:NOG317159
PANTHER:PTHR10501 HOGENOM:HOG000217519 ProtClustDB:CLSN2683617
KO:K11094 OMA:DIACATQ EMBL:AK103337 RefSeq:NP_001049846.1
UniGene:Os.75636 ProteinModelPortal:Q10MR0 STRING:Q10MR0
PRIDE:Q10MR0 EnsemblPlants:LOC_Os03g18720.1 GeneID:4332557
KEGG:dosa:Os03t0298800-01 KEGG:osa:4332557 Gramene:Q10MR0
Uniprot:Q10MR0
Length = 232
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 113/238 (47%), Positives = 152/238 (63%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+ NLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQ-HDA 129
AT A +Q F FY K MR+QYAKT+SD +A DG+ P + +A
Sbjct: 65 ATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAEEA 124
Query: 130 NQAGMGLNPXXXXXXXXTP-PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
Q+G P T S++ G S E PAPPNNILF+QN+P +TT M L
Sbjct: 125 QQSG----PNAAAQSNGTGYQASRL----GKTS--QEPPAPPNNILFIQNLPAETTSMML 174
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
Q+ F Q+PGF+EVRM+EAKPGIAFVEY D+ Q+ VAMQ+LQ KI + I+YAKK
Sbjct: 175 QILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>ZFIN|ZDB-GENE-060616-2 [details] [associations]
symbol:snrpb2 "small nuclear ribonucleoprotein
polypeptide B2" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060616-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HSSP:P08579
HOGENOM:HOG000217519 OMA:TTANKKP HOVERGEN:HBG000895
OrthoDB:EOG4H72CH EMBL:CU464066 EMBL:BC059527 IPI:IPI00486390
UniGene:Dr.14007 STRING:Q6PBZ6 Ensembl:ENSDART00000057601
InParanoid:Q6PBZ6 Uniprot:Q6PBZ6
Length = 229
Score = 324 (119.1 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 55/97 (56%), Positives = 86/97 (88%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG I++I+A KT++ +GQA+++FK++++
Sbjct: 11 DIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSA 70
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ ++QGFPFY+KPMRIQYAKT SD+++K GT+
Sbjct: 71 ATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTY 107
Score = 208 (78.3 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 48/98 (48%), Positives = 59/98 (60%)
Query: 156 PGGAKSVIPEAPA-------PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
P GA + P PA PPN ILF+ N+P +T M L M F+QFPGFKEVR+V K
Sbjct: 132 PAGAVNTQPPPPATVQIPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKH 191
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLITYAKK 245
I+FVE+ E QA VA +LQ +I + ITYAKK
Sbjct: 192 DISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 229
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 328 (120.5 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 58/97 (59%), Positives = 84/97 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98
Score = 203 (76.5 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 43/84 (51%), Positives = 55/84 (65%)
Query: 164 PEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQAT 222
P+ P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ ++ QA
Sbjct: 135 PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAG 194
Query: 223 VAMQSLQSLKIGQQQLL-ITYAKK 245
A +LQ KI + ITYAKK
Sbjct: 195 AARDALQGFKITPSHAMKITYAKK 218
>UNIPROTKB|E1C0I4 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0071013 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 KO:K11094 OMA:TTANKKP CTD:6629 EMBL:AADN02044178
IPI:IPI00603637 RefSeq:XP_419331.1 UniGene:Gga.4634
ProteinModelPortal:E1C0I4 Ensembl:ENSGALT00000031980 GeneID:421261
KEGG:gga:421261 NextBio:20824053 Uniprot:E1C0I4
Length = 226
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 107/236 (45%), Positives = 148/236 (62%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSL---EQSAN 118
Query: 131 QAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
A + P S P + +P+ P PN ILF+ N+P +T M L M
Sbjct: 119 AANKKIIQGATQNSTSAPGTS----PQNQQ--VPDNP--PNYILFLNNLPEETNEMMLSM 170
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 171 LFNQFPGFKEVRLVPGRHDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 226
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 107/237 (45%), Positives = 146/237 (61%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121
Query: 131 QA-GMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G P P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQG-TPNAANTQGTAAPNPQVP------------DYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 107/237 (45%), Positives = 146/237 (61%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121
Query: 131 QA-GMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G P P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQG-TPNSANTQGNAAPNPQVP------------DYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 106/237 (44%), Positives = 146/237 (61%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 131 QA-GMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G P + P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQG-TPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>WB|WBGene00004385 [details] [associations]
symbol:rnp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0042127
GO:GO:0007281 GO:GO:0000398 GO:GO:0040020 GO:GO:0017069
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 OMA:ATNAMRT EMBL:FO081596
PIR:T29387 RefSeq:NP_500504.1 ProteinModelPortal:Q21322 SMR:Q21322
STRING:Q21322 PaxDb:Q21322 EnsemblMetazoa:K08D10.4 GeneID:177181
KEGG:cel:CELE_K08D10.4 UCSC:K08D10.4 CTD:177181 WormBase:K08D10.4
InParanoid:Q21322 NextBio:895684 Uniprot:Q21322
Length = 206
Score = 327 (120.2 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 56/98 (57%), Positives = 84/98 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E++PN+T+YINNLNEK+KID+L++SL AVFKQFG I+ ++ F+TLK +GQA ++FK++ +
Sbjct: 3 EVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPA 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
A+AA E + GFPFY+KPMRIQ+A+ SD++A+ GT++
Sbjct: 63 ASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYI 100
Score = 182 (69.1 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 165 EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224
+ PAPPN ILF N+P T L++ F+QF G K++RMV +PGIAFVE+ + A A
Sbjct: 125 DGPAPPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPA 184
Query: 225 MQSLQSLKIGQQQLL-ITYAKK 245
+L + KI + + + YAKK
Sbjct: 185 RTTLNNFKISAEHTMRVDYAKK 206
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 106/237 (44%), Positives = 147/237 (62%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF A+
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAS 121
Query: 131 QA-GMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G P + P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQG-TPNAANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 330 (121.2 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 60/98 (61%), Positives = 83/98 (84%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I+PN+TIY+NNLNEKVK D+LK+SLH VF QFG I+++++F+ K +GQA +VFK+V+S
Sbjct: 3 DINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
A+ A+ +QGFPFY KPMRIQYA+ SD+I++A GTFV
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFV 100
Score = 165 (63.1 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 165 EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224
+ P PNNILF N+P T P +Q FSQFPG +EVR + AF+EY E + A
Sbjct: 136 DGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPA 195
Query: 225 MQSLQSLKIGQ-QQLLITYAKK 245
Q+L + +I QQ+ + +A K
Sbjct: 196 RQALDNFRITPTQQITVKFASK 217
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 330 (121.2 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 60/98 (61%), Positives = 83/98 (84%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I+PN+TIY+NNLNEKVK D+LK+SLH VF QFG I+++++F+ K +GQA +VFK+V+S
Sbjct: 3 DINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
A+ A+ +QGFPFY KPMRIQYA+ SD+I++A GTFV
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFV 100
Score = 165 (63.1 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 165 EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224
+ P PNNILF N+P T P +Q FSQFPG +EVR + AF+EY E + A
Sbjct: 136 DGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPA 195
Query: 225 MQSLQSLKIGQ-QQLLITYAKK 245
Q+L + +I QQ+ + +A K
Sbjct: 196 RQALDNFRITPTQQITVKFASK 217
>DICTYBASE|DDB_G0288391 [details] [associations]
symbol:snrpB2 "U2 small nuclear ribonucleoprotein B"
species:44689 "Dictyostelium discoideum" [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0288391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GenomeReviews:CM000154_GR EMBL:AAFI02000111
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HSSP:P09012 KO:K11094 RefSeq:XP_636725.1 ProteinModelPortal:Q54J05
STRING:Q54J05 EnsemblProtists:DDB0233135 GeneID:8626602
KEGG:ddi:DDB_G0288391 OMA:IFGQFPG ProtClustDB:CLSZ2429888
Uniprot:Q54J05
Length = 241
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 97/245 (39%), Positives = 142/245 (57%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
ME E A +I PN T+Y+NNL EK+ +L + L +F ++G ILEI+ K+LK +GQ
Sbjct: 1 METESA----DIPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQ 56
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXX 120
A++VFKD+ SA+ A+ +M GF F D+PM+IQY K+KSD ++K DGT++
Sbjct: 57 AFIVFKDITSASNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKK 116
Query: 121 XXXXDQHDANQAGMGLNPXXXXXXXXTPPLSQIPYPG-GAKSVIPEAPAPPNNILFVQNV 179
Q D G + + P G S+ P PPN LFV+N+
Sbjct: 117 GSNKKQ-DRKSTGQQQQQQKRPGAPTSTTSTTSPTTSNGTVSLQPRDD-PPNKTLFVENL 174
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-L 238
P M L M FSQF GFKEV MVE+K GIAF+E+ DE+++ AM +LQ K+ ++ +
Sbjct: 175 PDKCDSMMLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPM 234
Query: 239 LITYA 243
++++A
Sbjct: 235 VVSFA 239
>ASPGD|ASPL0000053720 [details] [associations]
symbol:AN0109 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0000398 EMBL:AACD01000004 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519 OMA:ATNAMRT
OrthoDB:EOG4TB7MX RefSeq:XP_657713.1 ProteinModelPortal:Q5BH71
STRING:Q5BH71 EnsemblFungi:CADANIAT00002640 GeneID:2875883
KEGG:ani:AN0109.2 Uniprot:Q5BH71
Length = 252
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 89/245 (36%), Positives = 137/245 (55%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+ I PN T+Y+ NL E++K+DQLK++L +F ++GTILEI+A + LK KGQA++VF +V
Sbjct: 8 SNIPPNPTVYVRNLEERIKLDQLKEALSEIFSEYGTILEIVAKRNLKAKGQAFIVFDNVD 67
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDA 129
SAT A++++ GF +DKPM + YAKT+SD + +G H+A
Sbjct: 68 SATRAIDEVNGFDLFDKPMVLDYAKTRSDATVRREGGDEELEAHKRRRLAEKERRQAHEA 127
Query: 130 NQAGMGLN-PXXXXXXXXTPPLSQI------PYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
+A L P P+ P G A +VIP+ PPN ILF++ +P
Sbjct: 128 LEAQKKLKRPPVGAPEAPGRPVKAAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRELPDT 187
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLI 240
+L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G + + +
Sbjct: 188 ADQGSLTAVFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGPEGKPIRV 247
Query: 241 TYAKK 245
TY ++
Sbjct: 248 TYQRQ 252
>POMBASE|SPBC4B4.07c [details] [associations]
symbol:usp102 "U1 snRNP-associated protein Usp102"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4B4.07c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0017069 GO:GO:0005685 GO:GO:0000395
eggNOG:NOG317159 PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
PIR:T40479 RefSeq:NP_596424.1 ProteinModelPortal:O74968
STRING:O74968 EnsemblFungi:SPBC4B4.07c.1 GeneID:2540865
KEGG:spo:SPBC4B4.07c OMA:SFVEFEN OrthoDB:EOG4TB7MX NextBio:20801981
Uniprot:O74968
Length = 249
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 80/234 (34%), Positives = 129/234 (55%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P+ T+YI N+ EK+++ LK+ L +F +G ++++ A KTL+ +GQA++VF ++ +A+
Sbjct: 23 TPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENAS 82
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDANQA 132
A++ +QG+P Y KPM IQY+K+KSDII + + P ++ + +
Sbjct: 83 RALKDLQGYPLYGKPMMIQYSKSKSDIIVQRES---PEEIETRKKDRK----NRREMLKR 135
Query: 133 GMGLNPXXXXXXXXTP-PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMF 191
L P P P + KS I E PPN +L +QN+P + L
Sbjct: 136 TSALQPAAPKPTHKKPVPKRNVG--AERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQI 193
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F F GF+EVRMV + GIAFVEY + +ATVA + + Q+ +T+A+K
Sbjct: 194 FEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFARK 247
>UNIPROTKB|G4MSP6 [details] [associations]
symbol:MGG_07085 "Small nuclear ribonucleoprotein U1a"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398
EMBL:CM001232 GO:GO:0017069 PANTHER:PTHR10501 RefSeq:XP_003715274.1
ProteinModelPortal:G4MSP6 EnsemblFungi:MGG_07085T0 GeneID:2682970
KEGG:mgr:MGG_07085 Uniprot:G4MSP6
Length = 234
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 84/235 (35%), Positives = 127/235 (54%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P T+Y+ NL E+VK D LK++L +F ++G I++I+A LK KGQA++VF D ASA
Sbjct: 4 APIATVYVRNLEERVKPDVLKETLTTIFSEYGNIIDIVAKTNLKAKGQAFVVFDDPASAQ 63
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDANQA 132
A+E++QGF +DKP+ + A+T+SD KA+G+ D+ A +A
Sbjct: 64 RAIEEVQGFEIFDKPIHLALARTRSDATVKANGS---EEDLEAHKRRRVAEMDKKKAAEA 120
Query: 133 GMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
L P GA +P+ PPN ILFVQ++P D L F
Sbjct: 121 AAAQTQLKDRANKPGRGLKATG-PAGAAPTVPDEYLPPNKILFVQHLPEDFDVEKLTTVF 179
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLITYAKK 245
+F GF+EVR+V + GIAFVEY E A A ++ + +G + + +TY ++
Sbjct: 180 GRFDGFREVRLVPGRRGIAFVEYDGEAGAIAAKENTAGMPLGAEGKPVKVTYQRQ 234
>ZFIN|ZDB-GENE-030131-2841 [details] [associations]
symbol:snrpa "small nuclear ribonucleoprotein
polypeptide A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-2841 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
EMBL:CU138549 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM EMBL:CABZ01062168 EMBL:BC064308
IPI:IPI00504389 RefSeq:NP_955965.1 UniGene:Dr.76157 SMR:Q6P2T1
STRING:Q6P2T1 Ensembl:ENSDART00000012018 GeneID:324121
KEGG:dre:324121 InParanoid:Q6P2T1 NextBio:20808604 Uniprot:Q6P2T1
Length = 281
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 91/213 (42%), Positives = 116/213 (54%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G E+ N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL +TLK KGQA+++FK++
Sbjct: 3 GQEMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEI 62
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHD 128
SA+ A+ MQGFPFYDKPMRIQY+K SDIIAK GTFV
Sbjct: 63 NSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKPKVPEAGA-- 120
Query: 129 ANQAGMGLNPXXXXXXXXTP---PLSQ----IPYPGGAKSVIPEAPAPPNNILFVQNVPH 181
+ G G P P P+SQ +P PG + P PP N+ Q P
Sbjct: 121 GKKGGSGATPAMAGVPAAIPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPNMAPGQMPPG 180
Query: 182 DTTPMALQMFFSQFPGFKEVRMVEAKPG-IAFV 213
P M Q PG ++ E P I F+
Sbjct: 181 AMPPGG--MMPGQMPGQMPQQVSENPPNHILFL 211
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 46/101 (45%), Positives = 64/101 (63%)
Query: 148 PPLSQIP--YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PP +P PG + E P PN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 183 PPGGMMPGQMPGQMPQQVSENP--PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 240
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A ++LQ KI Q + I++AKK
Sbjct: 241 GRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 86/194 (44%), Positives = 107/194 (55%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
Query: 131 QAGMGLNPXXXXXXXXTP---PLSQIP-----YPGGAKSVIPEAPAPPNNILFVQNVPHD 182
G G P P P++Q P PG + P PP + Q P
Sbjct: 125 VQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 183 TTPMALQMFFSQFP 196
P Q+ Q P
Sbjct: 185 MPPQ--QLMPGQMP 196
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 46/99 (46%), Positives = 63/99 (63%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PP Q+ PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 186 PP-QQL-MPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>GENEDB_PFALCIPARUM|MAL13P1.35 [details] [associations]
symbol:MAL13P1.35 "u1 small nuclear
ribonucleoprotein a, putative" species:5833 "Plasmodium falciparum"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 239 (89.2 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 44/97 (45%), Positives = 66/97 (68%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+YI NLN++VK D++K++L +F +G I +++ K+ KGQAW+V+ D A
Sbjct: 171 IPPNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECA 230
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
T A+ +QG+ + K M+I ++ KSDI AK DGTFV
Sbjct: 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFV 267
Score = 135 (52.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
P ILFV+NV + A F + GF E R++ + +AFV++ DE AT AM+++Q
Sbjct: 375 PYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQR-NVAFVDFTDETTATFAMKAVQ 433
Query: 230 SLKIGQQQLLITYAKK 245
+ ++ +L I+YAK+
Sbjct: 434 NYELQGSKLKISYAKR 449
Score = 38 (18.4 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 4 EVANQGNEISPNNTIY 19
E N+ NE PNN I+
Sbjct: 340 EDKNKKNEELPNNNIF 355
>UNIPROTKB|C0H5A4 [details] [associations]
symbol:MAL13P1.35 "U1 small nuclear ribonucleoprotein a,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 239 (89.2 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 44/97 (45%), Positives = 66/97 (68%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+YI NLN++VK D++K++L +F +G I +++ K+ KGQAW+V+ D A
Sbjct: 171 IPPNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECA 230
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
T A+ +QG+ + K M+I ++ KSDI AK DGTFV
Sbjct: 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFV 267
Score = 135 (52.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
P ILFV+NV + A F + GF E R++ + +AFV++ DE AT AM+++Q
Sbjct: 375 PYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQR-NVAFVDFTDETTATFAMKAVQ 433
Query: 230 SLKIGQQQLLITYAKK 245
+ ++ +L I+YAK+
Sbjct: 434 NYELQGSKLKISYAKR 449
Score = 38 (18.4 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 4 EVANQGNEISPNNTIY 19
E N+ NE PNN I+
Sbjct: 340 EDKNKKNEELPNNNIF 355
>UNIPROTKB|J9NXJ9 [details] [associations]
symbol:SNRPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
EMBL:AAEX03005528 Ensembl:ENSCAFT00000048760 Uniprot:J9NXJ9
Length = 165
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 65/98 (66%), Positives = 81/98 (82%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYIN+LNEK+K D+LK+SL+A+F QFG IL IL ++LK +GQA+++FK+V+
Sbjct: 24 ETCPNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFKEVSR 83
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
AT A+ MQGFPFYDKPM IQYAKT SDIIAK GTFV
Sbjct: 84 ATNALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTFV 121
>UNIPROTKB|J9NSX4 [details] [associations]
symbol:LOC100683259 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
OMA:TTANKKP EMBL:AAEX03017376 Ensembl:ENSCAFT00000021878
Uniprot:J9NSX4
Length = 230
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 84/236 (35%), Positives = 126/236 (53%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 12 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 71
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF D +
Sbjct: 72 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKSKNCGTDCNHCK 131
Query: 131 QAGMGLNPXXXXXXXXTPPLSQIP-YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
Q N + P Q+P YP + P N ++ ++ + P +
Sbjct: 132 QKAWSAN-----TQGNSTPNPQVPDYPPNYILFLNNLPEETNEMML--SMLFNQFPGFKE 184
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ PG ++ VE F G A A+Q + + ITYAKK
Sbjct: 185 VRL--VPGRHDIAFVE------FENDGQAGAARDALQGFKITP--SHAMKITYAKK 230
>CGD|CAL0004764 [details] [associations]
symbol:orf19.7375 species:5476 "Candida albicans" [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA;ISO] [GO:0030619 "U1
snRNA binding" evidence=IEA;ISO] [GO:0005685 "U1 snRNP"
evidence=IEA;ISO] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004764
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000066 GO:GO:0000398
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501 GO:GO:0030619
HOGENOM:HOG000217519 RefSeq:XP_716616.1 ProteinModelPortal:Q5A4F9
STRING:Q5A4F9 GeneID:3641744 KEGG:cal:CaO19.7375 Uniprot:Q5A4F9
Length = 204
Score = 226 (84.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 46/92 (50%), Positives = 62/92 (67%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP TIY+NNLNEKV I++LK L F G IL+I A KTLK KGQA++ F+D+ SAT
Sbjct: 3 SPRQTIYVNNLNEKVSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSAT 62
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
A+E + + KPM + YAK+ +D+I+ D
Sbjct: 63 KALE-LNKKDLFSKPMNVTYAKSDADVISTDD 93
Score = 105 (42.0 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM-QS 227
PPN+IL +QN+ L+++F +F GF VR+V+ K +AF+E+ E A + Q+
Sbjct: 130 PPNHILLIQNLEKFDD---LKIYFEKFAGFDNVRLVKVK-NLAFIEFESEDLAKSCLDQT 185
Query: 228 LQS-LKIGQQQLLITYAKK 245
+ LK +++++AKK
Sbjct: 186 TEDDLKQFGHDVILSFAKK 204
>UNIPROTKB|Q5A4F9 [details] [associations]
symbol:USA1 "Putative uncharacterized protein USA1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005685 "U1 snRNP"
evidence=ISO] [GO:0030619 "U1 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004764
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000066 GO:GO:0000398
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501 GO:GO:0030619
HOGENOM:HOG000217519 RefSeq:XP_716616.1 ProteinModelPortal:Q5A4F9
STRING:Q5A4F9 GeneID:3641744 KEGG:cal:CaO19.7375 Uniprot:Q5A4F9
Length = 204
Score = 226 (84.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 46/92 (50%), Positives = 62/92 (67%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP TIY+NNLNEKV I++LK L F G IL+I A KTLK KGQA++ F+D+ SAT
Sbjct: 3 SPRQTIYVNNLNEKVSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSAT 62
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
A+E + + KPM + YAK+ +D+I+ D
Sbjct: 63 KALE-LNKKDLFSKPMNVTYAKSDADVISTDD 93
Score = 105 (42.0 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM-QS 227
PPN+IL +QN+ L+++F +F GF VR+V+ K +AF+E+ E A + Q+
Sbjct: 130 PPNHILLIQNLEKFDD---LKIYFEKFAGFDNVRLVKVK-NLAFIEFESEDLAKSCLDQT 185
Query: 228 LQS-LKIGQQQLLITYAKK 245
+ LK +++++AKK
Sbjct: 186 TEDDLKQFGHDVILSFAKK 204
>UNIPROTKB|F1PFC6 [details] [associations]
symbol:SNRPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR012677 InterPro:IPR024888
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
EMBL:AAEX03000940 Ensembl:ENSCAFT00000008192 OMA:QAPRIMY
Uniprot:F1PFC6
Length = 177
Score = 174 (66.3 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 35/51 (68%), Positives = 42/51 (82%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
+GQA+++FK+V+SAT A+ MQGFPFYDKPM YAKT SDIIAK GTFV
Sbjct: 2 RGQAFVIFKEVSSATNALRSMQGFPFYDKPM---YAKTDSDIIAKMKGTFV 49
Score = 86 (35.3 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQ 194
PP Q+ PG P + PPN+ILF+ N+P +T + L M F+Q
Sbjct: 133 PP-QQL-MPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ 177
Score = 56 (24.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
PP IP PG A IP PP ++ Q P
Sbjct: 112 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 144
>ASPGD|ASPL0000027676 [details] [associations]
symbol:AN5779 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001305 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
PANTHER:PTHR10501 ProteinModelPortal:C8VFF2
EnsemblFungi:CADANIAT00003274 HOGENOM:HOG000181731 OMA:DIQTATQ
Uniprot:C8VFF2
Length = 188
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ +L+ +F +GT+L+I+A KT K +GQA +VFKD+ ++T
Sbjct: 19 PNQTLYCTNLPDKLRKYDLRLALYTLFSTYGTVLDIVAMKTEKMRGQAHVVFKDIQASTQ 78
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
A+ +QGF F+ KPM+I YAK SD+IA+ GT+V
Sbjct: 79 AMRALQGFEFFGKPMKIVYAKGSSDVIARLRGTYV 113
>UNIPROTKB|G4MYZ3 [details] [associations]
symbol:MGG_04351 "U2 small nuclear ribonucleoprotein B"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 EMBL:CM001232
GO:GO:0017069 PANTHER:PTHR10501 RefSeq:XP_003713461.1
ProteinModelPortal:G4MYZ3 EnsemblFungi:MGG_04351T0 GeneID:2677780
KEGG:mgr:MGG_04351 Uniprot:G4MYZ3
Length = 207
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 39/99 (39%), Positives = 70/99 (70%)
Query: 11 EISPNNTIYINNL-NEK-VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
+I PN T+Y+ N+ ++K + ++ +L+ +F +G +L+++ KT+K +GQA +VF+D+
Sbjct: 23 QIPPNQTLYVRNIRSDKGYQKQDMRTALYMLFSTYGPLLDVVVLKTMKMRGQAHIVFRDI 82
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
++T A+ + GF F+ ++I+YAKTKS+ IAK DGTF
Sbjct: 83 HASTQAMRSLDGFDFFGSKLKIEYAKTKSNTIAKLDGTF 121
>POMBASE|SPBC8D2.09c [details] [associations]
symbol:msl1 "U2 snRNP-associated protein Msl1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0030620 "U2 snRNA binding"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC8D2.09c GO:GO:0005829 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AB004538 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG317159 OrthoDB:EOG4TB7MM GO:GO:0030620
PANTHER:PTHR10501 PIR:T40754 RefSeq:NP_595571.1
ProteinModelPortal:Q7LL14 IntAct:Q7LL14 STRING:Q7LL14
EnsemblFungi:SPBC8D2.09c.1 GeneID:2541219 KEGG:spo:SPBC8D2.09c
OMA:LYLYCTQ NextBio:20802331 Uniprot:Q7LL14
Length = 111
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 38/87 (43%), Positives = 64/87 (73%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
NT+Y+NNLN+K+ + L+ +L+ +F +GT+++I+A KT K +GQA +VF D ++A A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAK 102
+ ++ F F+ K M+IQYA +KS II +
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIER 90
>SGD|S000001448 [details] [associations]
symbol:MSL1 "U2B component of U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP" evidence=TAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISS;IMP;IPI] [GO:0030620 "U2 snRNA
binding" evidence=IPI] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360 SGD:S000001448
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:Z37996 EMBL:AY558237
PIR:S48353 RefSeq:NP_012274.1 ProteinModelPortal:P40567 SMR:P40567
DIP:DIP-816N IntAct:P40567 MINT:MINT-572508 STRING:P40567
PaxDb:P40567 EnsemblFungi:YIR009W GeneID:854826 KEGG:sce:YIR009W
CYGD:YIR009w eggNOG:NOG317159 GeneTree:ENSGT00390000007046
HOGENOM:HOG000000973 OrthoDB:EOG4TB7MM NextBio:977683
Genevestigator:P40567 GermOnline:YIR009W GO:GO:0030620
PANTHER:PTHR10501 Uniprot:P40567
Length = 111
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 26/83 (31%), Positives = 56/83 (67%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVASATAA 74
NT+Y++ LNEK+ + +L+ +L +F FG +L++ + FK K +GQA++ + + A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFK--KQRGQAFITMRTIDQASLA 85
Query: 75 VEKMQGFPFYDKPMRIQYAKTKS 97
+ G F+ KP++++++K+++
Sbjct: 86 QISLNGERFFGKPLKVEFSKSET 108
>UNIPROTKB|Q8WN55 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0051148 "negative regulation of muscle cell differentiation"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AF445640 IPI:IPI00712263
RefSeq:NP_776867.1 UniGene:Bt.9031 ProteinModelPortal:Q8WN55
SMR:Q8WN55 PRIDE:Q8WN55 Ensembl:ENSBTAT00000066209 GeneID:282018
KEGG:bta:282018 CTD:5725 HOVERGEN:HBG069548 KO:K13218 OMA:SEECAQT
NextBio:20805882 ArrayExpress:Q8WN55 GO:GO:0051148 Uniprot:Q8WN55
Length = 531
Score = 160 (61.4 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 60/235 (25%), Positives = 97/235 (41%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
A + G Y+ +RI ++K S + + DQ A
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 295
Query: 131 QAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMALQ 189
G+ + P + + IP N++L V N+ P TP +L
Sbjct: 296 AFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLF 355
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 356 ILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 410
>UNIPROTKB|P26599 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005730 "nucleolus" evidence=TAS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CH471242
GO:GO:0048025 GO:GO:0000381 GO:GO:0008187 GO:GO:0036002
TIGRFAMs:TIGR01649 CTD:5725 HOVERGEN:HBG069548 KO:K13218
OMA:SEECAQT GO:GO:0051148 EMBL:X62006 EMBL:X65371 EMBL:X65372
EMBL:X60648 EMBL:X66975 EMBL:BT006819 EMBL:AC006273 EMBL:BC002397
EMBL:BC004383 EMBL:BC013694 IPI:IPI00179964 IPI:IPI00183626
IPI:IPI00334175 PIR:S23016 RefSeq:NP_002810.1 RefSeq:NP_114367.1
RefSeq:NP_114368.1 UniGene:Hs.172550 PDB:1QM9 PDB:1SJQ PDB:1SJR
PDB:2AD9 PDB:2ADB PDB:2ADC PDB:2EVZ PDB:3ZZY PDB:3ZZZ PDBsum:1QM9
PDBsum:1SJQ PDBsum:1SJR PDBsum:2AD9 PDBsum:2ADB PDBsum:2ADC
PDBsum:2EVZ PDBsum:3ZZY PDBsum:3ZZZ ProteinModelPortal:P26599
SMR:P26599 IntAct:P26599 MINT:MINT-1348690 STRING:P26599
PhosphoSite:P26599 DMDM:131528 SWISS-2DPAGE:P26599 PaxDb:P26599
PRIDE:P26599 DNASU:5725 Ensembl:ENST00000349038
Ensembl:ENST00000356948 Ensembl:ENST00000394601 GeneID:5725
KEGG:hsa:5725 UCSC:uc002lpq.2 UCSC:uc002lpr.2 GeneCards:GC19P000797
H-InvDB:HIX0137476 HGNC:HGNC:9583 HPA:CAB013507 MIM:600693
neXtProt:NX_P26599 PharmGKB:PA33934 eggNOG:NOG263741
HOGENOM:HOG000231699 ChEMBL:CHEMBL1293230 EvolutionaryTrace:P26599
GenomeRNAi:5725 NextBio:22252 PMAP-CutDB:P26599 ArrayExpress:P26599
Bgee:P26599 CleanEx:HS_PTBP1 Genevestigator:P26599
GermOnline:ENSG00000011304 Uniprot:P26599
Length = 531
Score = 160 (61.4 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 60/235 (25%), Positives = 97/235 (41%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
A + G Y+ +RI ++K S + + DQ A
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 295
Query: 131 QAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMALQ 189
G+ + P + + IP N++L V N+ P TP +L
Sbjct: 296 AFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLF 355
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 356 ILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 410
>CGD|CAL0004460 [details] [associations]
symbol:orf19.4748 species:5476 "Candida albicans" [GO:0030620
"U2 snRNA binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0071004 "U2-type prespliceosome" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004460 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000001
GO:GO:0000398 GO:GO:0005686 GO:GO:0030620 PANTHER:PTHR10501
RefSeq:XP_723434.1 ProteinModelPortal:Q5AQ60 STRING:Q5AQ60
GeneID:3634924 KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/91 (32%), Positives = 55/91 (60%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ T+Y+ NLN K+ L +L+ +F FG I+ I L++ G A+++F ++ SA
Sbjct: 28 LKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISI----NLQN-GFAFIIFSNLNSA 82
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
T A+ ++ F+DKP+ + YA +S I++
Sbjct: 83 TLALRNLKNQDFFDKPLVLNYAVKESKAISQ 113
>UNIPROTKB|Q5AQ60 [details] [associations]
symbol:MSL1 "Putative uncharacterized protein MSL1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0030620 "U2 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 CGD:CAL0004460 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AACQ01000001 GO:GO:0000398 GO:GO:0005686
GO:GO:0030620 PANTHER:PTHR10501 RefSeq:XP_723434.1
ProteinModelPortal:Q5AQ60 STRING:Q5AQ60 GeneID:3634924
KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/91 (32%), Positives = 55/91 (60%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ T+Y+ NLN K+ L +L+ +F FG I+ I L++ G A+++F ++ SA
Sbjct: 28 LKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISI----NLQN-GFAFIIFSNLNSA 82
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
T A+ ++ F+DKP+ + YA +S I++
Sbjct: 83 TLALRNLKNQDFFDKPLVLNYAVKESKAISQ 113
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 98 (39.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTS 261
Score = 97 (39.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 29/116 (25%), Positives = 50/116 (43%)
Query: 130 NQAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMAL 188
++AG+ + P + + IP N++L V N+ P TP +L
Sbjct: 319 SRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSL 378
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ F + + V+++ K A VE D QA +AM L K+ + + IT +K
Sbjct: 379 FILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 434
Score = 66 (28.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P + L+ FS G K + +
Sbjct: 458 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKD 514
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 515 RKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 552
>UNIPROTKB|F1LM18 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00562850
Ensembl:ENSRNOT00000044865 ArrayExpress:F1LM18 Uniprot:F1LM18
Length = 554
Score = 98 (39.6 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTS 261
Score = 93 (37.8 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 351 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQA 410
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 411 QLAMSHLNGHKLHGKSVRITLSK 433
Score = 66 (28.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P + L+ FS G K + +
Sbjct: 457 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKD 513
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 514 RKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 551
>UNIPROTKB|Q6P736 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract binding protein 1,
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:62047 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474029 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ IPI:IPI00390239 UniGene:Rn.64440 EMBL:BC061858
RefSeq:NP_001257986.1 RefSeq:NP_071961.2 SMR:Q6P736 STRING:Q6P736
Ensembl:ENSRNOT00000030357 GeneID:29497 KEGG:rno:29497
InParanoid:Q6P736 Genevestigator:Q6P736 Uniprot:Q6P736
Length = 556
Score = 98 (39.6 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTS 261
Score = 93 (37.8 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 353 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQA 412
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 413 QLAMSHLNGHKLHGKSVRITLSK 435
Score = 66 (28.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P + L+ FS G K + +
Sbjct: 459 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKD 515
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 516 RKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 553
>UNIPROTKB|J9P5T5 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:5725 KO:K13218 EMBL:AAEX03012673
RefSeq:XP_542215.2 ProteinModelPortal:J9P5T5
Ensembl:ENSCAFT00000049054 GeneID:485097 KEGG:cfa:485097
Uniprot:J9P5T5
Length = 557
Score = 98 (39.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTS 262
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 354 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQA 413
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 414 QLAMSHLNGHKLHGKPVRITLSK 436
Score = 68 (29.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P + L++ FS G K + +
Sbjct: 460 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKD 516
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 517 RKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
>UNIPROTKB|F1S6R7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:FP015903 Ensembl:ENSSSCT00000014665
Uniprot:F1S6R7
Length = 557
Score = 98 (39.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTS 262
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 354 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQA 413
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 414 QLAMSHLNGHKLHGKPVRITLSK 436
Score = 68 (29.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P + L++ FS G K + +
Sbjct: 460 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKD 516
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 517 RKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
>UNIPROTKB|F1PCJ7 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051148 "negative regulation of muscle cell
differentiation" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:AAEX03012673
Ensembl:ENSCAFT00000031317 Uniprot:F1PCJ7
Length = 558
Score = 98 (39.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 182 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 236
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 237 HAKLSLDGQNIYNACCTLRIDFSKLTS 263
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 355 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQA 414
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 415 QLAMSHLNGHKLHGKPVRITLSK 437
Score = 68 (29.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P + L++ FS G K + +
Sbjct: 461 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKD 517
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 518 RKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 555
>UNIPROTKB|F1P5K0 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00571435 Ensembl:ENSGALT00000003039
ArrayExpress:F1P5K0 Uniprot:F1P5K0
Length = 527
Score = 97 (39.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 152 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPMSAQ 206
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 207 HAKLSLDGQNIYNACCTLRIDFSKLTS 233
Score = 92 (37.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP L + F + + V+++ K A V+ D QA
Sbjct: 324 IPGLAGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQA 383
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 384 QLAMSHLNGQKLHGKPIRITLSK 406
Score = 68 (29.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P L+M FS G K + +
Sbjct: 430 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKD 486
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A ++ L + +G+ L ++++K
Sbjct: 487 RKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSK 524
>UNIPROTKB|E1BVR1 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:SEECAQT GO:GO:0051148
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00684956 ProteinModelPortal:E1BVR1
Ensembl:ENSGALT00000003042 ArrayExpress:E1BVR1 Uniprot:E1BVR1
Length = 532
Score = 97 (39.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 157 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPMSAQ 211
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 212 HAKLSLDGQNIYNACCTLRIDFSKLTS 238
Score = 92 (37.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP L + F + + V+++ K A V+ D QA
Sbjct: 329 IPGLAGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQA 388
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 389 QLAMSHLNGQKLHGKPIRITLSK 411
Score = 68 (29.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P L+M FS G K + +
Sbjct: 435 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSIAEEDLKMLFSSNGGMVKGFKFFQKD 491
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A ++ L + +G+ L ++++K
Sbjct: 492 RKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSK 529
>UNIPROTKB|Q29099 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISS] [GO:0000381 "regulation
of alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X93009 PIR:S68857
RefSeq:NP_999396.1 UniGene:Ssc.16210 ProteinModelPortal:Q29099
SMR:Q29099 STRING:Q29099 PRIDE:Q29099 GeneID:397461 KEGG:ssc:397461
OrthoDB:EOG4GMTXQ Uniprot:Q29099
Length = 557
Score = 98 (39.6 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTS 262
Score = 91 (37.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 354 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQMADGSQA 413
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 414 QLAMSHLNGHKLHGKPVRITLSK 436
Score = 68 (29.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P + L++ FS G K + +
Sbjct: 460 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKD 516
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 517 RKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
>POMBASE|SPBC29A3.07c [details] [associations]
symbol:sab14 "U2 snRNP-associated protein SF3B14
ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000384 "first spliceosomal transesterification activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
Uniprot:O59670
Length = 115
Score = 121 (47.7 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 30/105 (28%), Positives = 59/105 (56%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
M P NQ E+ N+ ++I NL+ K+ +++ + +F ++G + +I T++ +G
Sbjct: 1 MPPSTVNQ--EV--NSILFIKNLSFKITAEEM----YDLFGRYGPVRQIRLGNTVQTRGT 52
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG 105
A++V+++V A A EK+ G+ F D+ + + Y + AK DG
Sbjct: 53 AFVVYENVQDARRACEKLSGYNFMDRYLVVHYYNPER---AKVDG 94
>TAIR|locus:2135605 [details] [associations]
symbol:AT4G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 IPI:IPI00546459 RefSeq:NP_193001.2
UniGene:At.46444 ProteinModelPortal:F4JRD9 SMR:F4JRD9 PRIDE:F4JRD9
EnsemblPlants:AT4G12640.1 GeneID:826877 KEGG:ath:AT4G12640
OMA:ERNYEAG Uniprot:F4JRD9
Length = 823
Score = 108 (43.1 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ +++ NL + L++ L F +FG LE LAF+ + A++ F A A
Sbjct: 21 PSRHLWVGNLPHGI----LERELADRFLRFGE-LESLAFQP--GRSYAFVNFNHDEDAFA 73
Query: 74 AVEKMQGFPFYDKPMRIQYAKT-KSDIIAKADGTF 107
A+E +QGFP P+RI++AK KS ++ D +
Sbjct: 74 AIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIY 108
Score = 76 (31.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 159 AKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG--IAFVEYG 216
+KS + + A P+ +L++ P + + + + F F E+ V PG AFV++
Sbjct: 138 SKSKMNDRNAEPSEVLYI-GFPA-SLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFR 195
Query: 217 DEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ M A A +SLQ G ++ I +AK
Sbjct: 196 NLMAACKAKESLQGKLFGNPRVHICFAK 223
>MGI|MGI:1923334 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0045595 "regulation of cell differentiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923334
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043249 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ CTD:9991 EMBL:AK033732
EMBL:AK088560 EMBL:AL824704 EMBL:BC006638 EMBL:BC057641
IPI:IPI00221840 IPI:IPI00975110 RefSeq:NP_659153.2
RefSeq:NP_835458.1 UniGene:Mm.331640 ProteinModelPortal:Q8BHD7
SMR:Q8BHD7 STRING:Q8BHD7 PhosphoSite:Q8BHD7 PaxDb:Q8BHD7
PRIDE:Q8BHD7 Ensembl:ENSMUST00000030076 Ensembl:ENSMUST00000148331
Ensembl:ENSMUST00000172768 GeneID:230257 KEGG:mmu:230257
UCSC:uc008szw.2 UCSC:uc008szx.2 InParanoid:A2ANH0 ChiTaRS:PTBP3
NextBio:379861 Bgee:Q8BHD7 CleanEx:MM_ROD1 Genevestigator:Q8BHD7
GermOnline:ENSMUSG00000028382 Uniprot:Q8BHD7
Length = 523
Score = 96 (38.9 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
AN+G + SP I I NL V ++ L H +F +FGT+L+I+ F T ++ QA
Sbjct: 140 ANEGTLLPGQSPVLRIIIENLFYPVTLEVL----HQIFSKFGTVLKIITF-TKNNQFQAL 194
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS 97
L + D +A A + G Y+ +RI ++K S
Sbjct: 195 LQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTS 231
Score = 85 (35.0 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 28/98 (28%), Positives = 44/98 (44%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPP-NNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEA 206
PL+ + IP A P N++L V N+ P TP L + F + V+++
Sbjct: 305 PLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFN 364
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
K A V+ D QA +AM L ++ + L T +K
Sbjct: 365 KKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 402
Score = 62 (26.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P T L+ F++ K + +
Sbjct: 426 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKD 482
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 483 RKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520
>RGD|621671 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IEA;ISO] [GO:0043249
"erythrocyte maturation" evidence=IEA] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:621671 GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0033119
GO:GO:0043249 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ CTD:9991 OMA:PPSVTMD EMBL:AB023966
IPI:IPI00326775 RefSeq:NP_112636.1 UniGene:Rn.162818
ProteinModelPortal:Q9Z118 SMR:Q9Z118 STRING:Q9Z118 PRIDE:Q9Z118
Ensembl:ENSRNOT00000022107 GeneID:83515 KEGG:rno:83515
UCSC:RGD:621671 InParanoid:Q9Z118 NextBio:615974
Genevestigator:Q9Z118 GermOnline:ENSRNOG00000016334 Uniprot:Q9Z118
Length = 523
Score = 93 (37.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V ++ L H +F +FGT+L+I+ F T ++ QA
Sbjct: 140 SNEGTLLPGQSPVLRIIIENLFYPVTLEVL----HQIFSKFGTVLKIITF-TKNNQFQAL 194
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS 97
L + D +A A + G Y+ +RI ++K S
Sbjct: 195 LQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTS 231
Score = 87 (35.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/98 (28%), Positives = 44/98 (44%)
Query: 149 PLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEA 206
PL+ + IP A P N++L V N+ P TP L + F + V+++
Sbjct: 305 PLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFN 364
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
K A V+ D QA +AM L ++ + L T +K
Sbjct: 365 KKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSK 402
Score = 62 (26.9 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P T L+ F++ K + +
Sbjct: 426 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKD 482
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 483 RKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520
>UNIPROTKB|D4AB53 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
IPI:IPI00390801 Ensembl:ENSRNOT00000030365 ArrayExpress:D4AB53
Uniprot:D4AB53
Length = 528
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 53/212 (25%), Positives = 85/212 (40%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
A + G Y+ +RI ++K S + + DQ A
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 294
Query: 131 QAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMALQ 189
G+ + P + + IP N++L V N+ P TP +L
Sbjct: 295 AFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLF 354
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+ F + + V+++ K A V+ D QA
Sbjct: 355 ILFGVYGDVQRVKILFNKKENALVQMADGSQA 386
>ZFIN|ZDB-GENE-050522-492 [details] [associations]
symbol:ptbp1a "polypyrimidine tract binding protein
1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0060472 "positive regulation of cortical granule exocytosis by
elevation of cytosolic calcium ion concentration" evidence=IMP]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
[GO:0045746 "negative regulation of Notch signaling pathway"
evidence=IMP] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=IMP] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-492 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009953 GO:GO:0045746
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548
KO:K13218 OMA:SEECAQT eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ GO:GO:0060729 EMBL:CR788230 EMBL:BC095372
IPI:IPI00607308 RefSeq:NP_001018313.1 UniGene:Dr.45492 SMR:Q503D3
Ensembl:ENSDART00000017668 GeneID:323490 KEGG:dre:323490 CTD:323490
InParanoid:Q503D3 NextBio:20808275 GO:GO:0060472 Uniprot:Q503D3
Length = 574
Score = 94 (38.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A G++ SP + + NL V +D L H +F +FGT+L+I+ F T ++ QA + +
Sbjct: 185 AGMGSQ-SPVLRVIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALVQY 238
Query: 66 KDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS 97
D +A A + G Y+ +RI ++K S
Sbjct: 239 SDGMTAQHAKLSLDGQNIYNACCTLRISFSKLTS 272
Score = 86 (35.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 168 APPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQ 226
A N++L V N+ P TP L + F + V+++ K A V+ D QA +AM
Sbjct: 376 AAGNSVLLVSNLNPESVTPQCLFILFGVYGDVMRVKILFNKKENALVQMSDGTQAQLAMS 435
Query: 227 SLQSLKIGQQQLLITYAK 244
L K+ + L T +K
Sbjct: 436 HLNGQKLYGKALRATLSK 453
>MGI|MGI:97791 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0033119 "negative regulation of RNA
splicing" evidence=ISO] [GO:0036002 "pre-mRNA binding"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISO] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:97791 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X52101 IPI:IPI00749991
UniGene:Mm.265610 ProteinModelPortal:P17225 SMR:P17225
MINT:MINT-1862139 STRING:P17225 PhosphoSite:P17225 PaxDb:P17225
PRIDE:P17225 ChiTaRS:PTBP1 CleanEx:MM_PTBP1 Genevestigator:P17225
GermOnline:ENSMUSG00000006498 Uniprot:P17225
Length = 527
Score = 132 (51.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 54/212 (25%), Positives = 86/212 (40%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPXXXXXXXXXXXXXXXDQHDAN 130
A + G Y+ +RI ++K S + + DQ A
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 294
Query: 131 QAGMGLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMALQ 189
G+ + P S ++ IP N++L V N+ P TP +L
Sbjct: 295 AFGLSVPNVHGALAPLAIP-SAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLF 353
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+ F + + V+++ K A V+ D QA
Sbjct: 354 ILFGVYGDVQRVKILFNKKENALVQMADGSQA 385
>ZFIN|ZDB-GENE-050320-141 [details] [associations]
symbol:ptbp2a "polypyrimidine tract binding protein
2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050320-141
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:CU896585 IPI:IPI00996240 Ensembl:ENSDART00000123275
Bgee:F1QG05 Uniprot:F1QG05
Length = 512
Score = 102 (41.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G+ SP I I+N+ V +D L+Q +F +FGT+++I+ F T ++ QA L + D
Sbjct: 160 GSASSPVLRIIIDNMFYPVTLDVLQQ----IFSKFGTVMKIITF-TKNNQFQALLQYNDP 214
Query: 69 ASATAAVEKMQGFPFYDK--PMRIQYAK 94
A A A + G Y+ +RI Y+K
Sbjct: 215 ACAQQAKVALDGQNIYNACCTLRIDYSK 242
Score = 71 (30.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 173 ILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL 231
+L V N+ + TP +L F + + V+++ K A ++ D QA +AM L
Sbjct: 320 VLLVSNLNEEMVTPHSLFTLFGVYGDVQRVKILFNKKDSALIQMADMNQAQLAMSHLNGQ 379
Query: 232 KIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 380 KMFSKIIRVTMSK 392
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/111 (21%), Positives = 46/111 (41%)
Query: 135 GLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQ 194
GL+ PL + PG +K+ + PP+ L + N+P D T L++ FS
Sbjct: 402 GLDDQGLTKDFTNSPLHRFKKPG-SKNF--QNIFPPSATLHLSNIPQDVTEEDLRVLFSN 458
Query: 195 FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
G + +A ++ +A + L + +G L ++++K
Sbjct: 459 SGGTVKAFKFFQDHKMALIQMSTIEEAIQCLIDLHNYNMGNNHHLKVSFSK 509
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 96 (38.9 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L+Q +F +FGT+++I+ F T ++ QA L F D +A
Sbjct: 172 SPVLRIIIDNMFYPVTLDVLQQ----IFSKFGTVMKIITF-TKNNQFQALLQFSDPVNAQ 226
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 227 QAKLSLDGQNIYNSCCTLRIDFSK 250
Score = 78 (32.5 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
P +L V N+ + TP +L F + + V+++ K A ++ D QA +AM L
Sbjct: 343 PGGVLLVSNLNDEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMSDGNQAQLAMSHL 402
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 403 NGQKMYGKIIRVTLSK 418
Score = 67 (28.6 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 24/112 (21%), Positives = 53/112 (47%)
Query: 135 GLNPXXXXXXXXTPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQ 194
GL+ + PL + PG +K+ + PP+ L + N+P + T L++ FS
Sbjct: 428 GLDDQGLTKDFTSSPLHRFKKPG-SKNF--QNIFPPSATLHLSNIPDNVTEEDLRLLFSN 484
Query: 195 FPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
G K + + + ++ ++ +A A+ L + +G+ +L ++++K
Sbjct: 485 SGGTVKAFKFFQDRK-MSLLQMATAEEAIQALIDLHNYDMGRGHRLRVSFSK 535
>UNIPROTKB|O95758 [details] [associations]
symbol:PTBP3 "Polypyrimidine tract-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0045595 "regulation of cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IDA] [GO:0009653 "anatomical structure
morphogenesis" evidence=TAS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471105
GO:GO:0033119 GO:GO:0009653 GO:GO:0043249 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:AK001685 EMBL:AK302558 EMBL:CR749471
EMBL:AL158824 EMBL:AL359073 EMBL:BC039896 EMBL:BC044585
EMBL:BI463123 EMBL:AB023967 IPI:IPI00159072 IPI:IPI00384710
IPI:IPI00470879 IPI:IPI00640632 IPI:IPI00915287 IPI:IPI00915299
IPI:IPI00915400 RefSeq:NP_001157260.1 RefSeq:NP_001157262.1
RefSeq:NP_001231826.1 RefSeq:NP_001231827.1 RefSeq:NP_005147.3
UniGene:Hs.269988 ProteinModelPortal:O95758 SMR:O95758
IntAct:O95758 STRING:O95758 PhosphoSite:O95758 PaxDb:O95758
PRIDE:O95758 Ensembl:ENST00000210227 Ensembl:ENST00000334318
Ensembl:ENST00000343327 Ensembl:ENST00000374255
Ensembl:ENST00000374257 Ensembl:ENST00000458258 GeneID:9991
KEGG:hsa:9991 UCSC:uc004bfv.3 UCSC:uc004bfw.3 UCSC:uc004bfx.3
UCSC:uc004bfz.3 CTD:9991 GeneCards:GC09M114981 H-InvDB:HIX0008290
HGNC:HGNC:10253 MIM:607527 neXtProt:NX_O95758 PharmGKB:PA34625
OMA:PPSVTMD GenomeRNAi:9991 NextBio:37743 ArrayExpress:O95758
Bgee:O95758 CleanEx:HS_ROD1 Genevestigator:O95758
GermOnline:ENSG00000119314 Uniprot:O95758
Length = 552
Score = 93 (37.8 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V ++ L H +F +FGT+L+I+ F T ++ QA
Sbjct: 169 SNEGTVLPGQSPVLRIIIENLFYPVTLEVL----HQIFSKFGTVLKIITF-TKNNQFQAL 223
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS 97
L + D +A A + G Y+ +RI ++K S
Sbjct: 224 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTS 260
Score = 81 (33.6 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 160 KSVIPEAPA-PPNNILFVQNVPHDT-TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGD 217
+ IP A P N++L V N+ D TP L + F + V+++ K A V+ D
Sbjct: 345 RMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMAD 404
Query: 218 EMQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L ++ + L T +K
Sbjct: 405 ANQAQLAMNHLSGQRLYGKVLRATLSK 431
Score = 60 (26.2 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 22/98 (22%), Positives = 45/98 (45%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ-MFFSQFPGFKEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P T L+ +F K + +
Sbjct: 455 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKD 511
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 512 RKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 549
>WB|WBGene00016808 [details] [associations]
symbol:C50D2.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003723 EMBL:FO080633 eggNOG:COG0724
HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF RefSeq:NP_493659.3
ProteinModelPortal:Q8ITY4 SMR:Q8ITY4 STRING:Q8ITY4 PaxDb:Q8ITY4
EnsemblMetazoa:C50D2.5 GeneID:173394 KEGG:cel:CELE_C50D2.5
UCSC:C50D2.5 CTD:173394 WormBase:C50D2.5
GeneTree:ENSGT00390000005908 InParanoid:Q8ITY4 NextBio:879467
Uniprot:Q8ITY4
Length = 138
Score = 108 (43.1 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 25/94 (26%), Positives = 53/94 (56%)
Query: 7 NQGNEISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
N+G ++ P N +YI NL K+ +++ + +F +FG + +I T + +G A++V
Sbjct: 8 NRGAKLPPEVNRILYIKNLPYKITTEEM----YEIFGKFGAVRQIRVGNTAETRGTAFVV 63
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAK-TKS 97
++D+ A A E + G+ ++ + + Y + TK+
Sbjct: 64 YEDIFDAKTACEHLSGYNVSNRYLVVLYYQATKA 97
Score = 100 (40.3 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 166 APAPP--NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRM---VEAKPGIAFVEYGDEMQ 220
A PP N IL+++N+P+ T + F +F +++R+ E + G AFV Y D
Sbjct: 11 AKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETR-GTAFVVYEDIFD 69
Query: 221 ATVAMQSLQSLKIGQQQLLITY 242
A A + L + + L++ Y
Sbjct: 70 AKTACEHLSGYNVSNRYLVVLY 91
>UNIPROTKB|F1PXP9 [details] [associations]
symbol:PTBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 OMA:PPSVTMD
EMBL:AAEX03008069 EMBL:AAEX03008070 Ensembl:ENSCAFT00000004839
Uniprot:F1PXP9
Length = 521
Score = 91 (37.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V ++ L H +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 148 SPVLRIIIENLFYPVTLEVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 202
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 203 YAKMALDGQNIYNACCTLRIDFSKLTS 229
Score = 80 (33.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 160 KSVIPEAPA-PPNNILFVQNVPHDT-TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGD 217
+ IP A P N++L V N+ D TP L + F + V+++ K A V+ D
Sbjct: 314 RMAIPGAGGLPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMAD 373
Query: 218 EMQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L ++ + L T +K
Sbjct: 374 ANQAQLAMNHLSGQRLYGKVLRATLSK 400
Score = 62 (26.9 bits), Expect = 0.00074, Sum P(2) = 0.00073
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P T L+ F++ K + +
Sbjct: 424 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKD 480
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 481 RKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 518
>UNIPROTKB|F1S549 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000007533 Uniprot:F1S549
Length = 401
Score = 88 (36.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 34 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 88
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 89 QAKLALDGQNIYNACCTLRIDFSK 112
Score = 80 (33.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 198 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 257
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 258 QLAMNHLNGQKMYGKIIRVTLSK 280
>UNIPROTKB|I3LP39 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000024275 Uniprot:I3LP39
Length = 405
Score = 88 (36.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 34 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 88
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 89 QAKLALDGQNIYNACCTLRIDFSK 112
Score = 80 (33.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 202 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 261
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 262 QLAMNHLNGQKMYGKIIRVTLSK 284
>UNIPROTKB|I3LDE4 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:FP085536 EMBL:CU137694 Ensembl:ENSSSCT00000022271
Uniprot:I3LDE4
Length = 411
Score = 88 (36.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 35 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 89
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 90 QAKLALDGQNIYNACCTLRIDFSK 113
Score = 80 (33.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 208 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 267
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 268 QLAMNHLNGQKMYGKIIRVTLSK 290
>UNIPROTKB|F1MPG6 [details] [associations]
symbol:F1MPG6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0033119 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:PPSVTMD EMBL:DAAA02024547 IPI:IPI00700660
Ensembl:ENSBTAT00000022272 Uniprot:F1MPG6
Length = 523
Score = 90 (36.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V ++ L H +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 148 SPVLRIIIENLFYPVTLEVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAH 202
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 203 YAKMALDGQNIYNACCTLRIDFSKLTS 229
Score = 80 (33.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 160 KSVIPEAPAPP-NNILFVQNVPHDT-TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGD 217
+ IP A P N++L V N+ D TP L + F + V+++ K A V+ D
Sbjct: 316 RMAIPGAGGMPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMAD 375
Query: 218 EMQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L ++ + L T +K
Sbjct: 376 ANQAQLAMNHLSGQRLYGKVLRATLSK 402
Score = 62 (26.9 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P T L+ F++ K + +
Sbjct: 426 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKD 482
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 483 RKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520
>UNIPROTKB|F1NRD6 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:AADN02012892 IPI:IPI00602746
Ensembl:ENSGALT00000008906 ArrayExpress:F1NRD6 Uniprot:F1NRD6
Length = 532
Score = 88 (36.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK 256
Score = 81 (33.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 329 MPGVSASGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 388
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 389 QLAMSHLNGQKMYGKIIRVTLSK 411
>UNIPROTKB|Q06A95 [details] [associations]
symbol:ROD1 "ROD1" species:9823 "Sus scrofa" [GO:0033119
"negative regulation of RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0033119 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ OMA:PPSVTMD EMBL:CU234201
EMBL:DQ972969 RefSeq:NP_001070683.1 UniGene:Ssc.16910 SMR:Q06A95
Ensembl:ENSSSCT00000006012 GeneID:768100 KEGG:ssc:768100
CTD:100701891 Uniprot:Q06A95
Length = 523
Score = 90 (36.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V ++ L H +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 148 SPVLRIIIENLFYPVTLEVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAH 202
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 203 YAKMALDGQNIYNACCTLRIDFSKLTS 229
Score = 78 (32.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 169 PPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQS 227
P N++L V N+ D TP L + F + V+++ K A V+ D QA +AM
Sbjct: 326 PGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 385
Query: 228 LQSLKIGQQQLLITYAK 244
L ++ + L T +K
Sbjct: 386 LSGQRLYGKVLRATLSK 402
Score = 62 (26.9 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK 207
PL + PG +K+ + PP+ L + N+P T L+ F++ K + +
Sbjct: 426 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKD 482
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 483 RKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520
>UNIPROTKB|A8YXY5 [details] [associations]
symbol:PTBP1 "PTBP1 protein" species:9913 "Bos taurus"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
UniGene:Bt.9031 HOVERGEN:HBG069548 EMBL:DAAA02020232 EMBL:BC103383
IPI:IPI00968681 SMR:A8YXY5 Ensembl:ENSBTAT00000066124
Uniprot:A8YXY5
Length = 446
Score = 98 (39.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L H +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTS 262
Score = 67 (28.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 163 IPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
IP N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 354 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQA 413
>UNIPROTKB|Q9UKA9 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:2000177 "regulation of neural
precursor cell proliferation" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 EMBL:AF176085 EMBL:AB051232
EMBL:AB051233 EMBL:AF530580 EMBL:AF530581 EMBL:AF530582
EMBL:AF530583 EMBL:BK000526 EMBL:AL357150 EMBL:BC016582
IPI:IPI00254162 IPI:IPI00514064 IPI:IPI00641664 IPI:IPI00647067
IPI:IPI00743676 IPI:IPI00748295 RefSeq:NP_067013.1
UniGene:Hs.269895 UniGene:Hs.596061 PDB:2CQ1 PDBsum:2CQ1
ProteinModelPortal:Q9UKA9 SMR:Q9UKA9 IntAct:Q9UKA9
MINT:MINT-1483252 STRING:Q9UKA9 PhosphoSite:Q9UKA9 DMDM:74761983
REPRODUCTION-2DPAGE:IPI00647067 PaxDb:Q9UKA9 PRIDE:Q9UKA9
DNASU:58155 Ensembl:ENST00000236228 Ensembl:ENST00000370197
Ensembl:ENST00000370198 Ensembl:ENST00000426398 GeneID:58155
KEGG:hsa:58155 UCSC:uc001drn.2 UCSC:uc001dro.2 UCSC:uc001drq.3
UCSC:uc001drr.3 CTD:58155 GeneCards:GC01P097187 HGNC:HGNC:17662
HPA:HPA047420 MIM:608449 neXtProt:NX_Q9UKA9 PharmGKB:PA33935
OrthoDB:EOG473PSG ChiTaRS:PTBP2 EvolutionaryTrace:Q9UKA9
GenomeRNAi:58155 NextBio:64859 ArrayExpress:Q9UKA9 Bgee:Q9UKA9
CleanEx:HS_PTBP2 Genevestigator:Q9UKA9 GermOnline:ENSG00000117569
Uniprot:Q9UKA9
Length = 531
Score = 88 (36.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK 256
Score = 80 (33.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 329 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 388
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 389 QLAMNHLNGQKMYGKIIRVTLSK 411
>MGI|MGI:1860489 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=ISO] [GO:2000177 "regulation
of neural precursor cell proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1860489 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
GO:GO:2000177 KO:K14948 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG ChiTaRS:PTBP2
EMBL:AF095718 EMBL:AK013734 EMBL:AK137348 EMBL:BC010255
EMBL:AY333752 EMBL:BK000527 IPI:IPI00136002 IPI:IPI00751759
RefSeq:NP_062423.1 UniGene:Mm.29966 ProteinModelPortal:Q91Z31
SMR:Q91Z31 IntAct:Q91Z31 STRING:Q91Z31 PhosphoSite:Q91Z31
PaxDb:Q91Z31 PRIDE:Q91Z31 Ensembl:ENSMUST00000029780 GeneID:56195
KEGG:mmu:56195 UCSC:uc008rdi.1 UCSC:uc008rdk.2 InParanoid:Q91Z31
OMA:QSQLAMS NextBio:312010 Bgee:Q91Z31 CleanEx:MM_PTBP2
Genevestigator:Q91Z31 GermOnline:ENSMUSG00000028134 Uniprot:Q91Z31
Length = 531
Score = 88 (36.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK 256
Score = 80 (33.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 329 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 388
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 389 QLAMNHLNGQKMYGKIIRVTLSK 411
>RGD|1359267 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISO] [GO:0006376
"mRNA splice site selection" evidence=IEA;ISO] [GO:0033119
"negative regulation of RNA splicing" evidence=IEA;ISO] [GO:2000177
"regulation of neural precursor cell proliferation"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1359267
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG
EMBL:AJ010585 EMBL:BC082076 EMBL:AY333750 IPI:IPI00471764
IPI:IPI00758469 RefSeq:NP_001005555.1 UniGene:Rn.64916
ProteinModelPortal:Q66H20 SMR:Q66H20 STRING:Q66H20 PRIDE:Q66H20
Ensembl:ENSRNOT00000015036 GeneID:310820 KEGG:rno:310820
UCSC:RGD:1359267 InParanoid:Q66H20 NextBio:662705
Genevestigator:Q66H20 GermOnline:ENSRNOG00000010827 Uniprot:Q66H20
Length = 531
Score = 88 (36.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK 256
Score = 80 (33.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 329 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 388
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 389 QLAMNHLNGQKMYGKIIRVTLSK 411
>UNIPROTKB|E2RSK4 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QSQLAMS EMBL:AAEX03004787
EMBL:AAEX03004788 EMBL:AAEX03004789 EMBL:AAEX03004790
ProteinModelPortal:E2RSK4 PRIDE:E2RSK4 Ensembl:ENSCAFT00000031985
Uniprot:E2RSK4
Length = 532
Score = 88 (36.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK 256
Score = 80 (33.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 329 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 388
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 389 QLAMNHLNGQKMYGKIIRVTLSK 411
>UNIPROTKB|B4DSS8 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 HOGENOM:HOG000231699 EMBL:AL357150
IPI:IPI00254162 UniGene:Hs.269895 UniGene:Hs.596061 HGNC:HGNC:17662
ChiTaRS:PTBP2 OMA:QSQLAMS EMBL:AK299897 SMR:B4DSS8 STRING:B4DSS8
Ensembl:ENST00000394184 UCSC:uc010otz.1 Uniprot:B4DSS8
Length = 548
Score = 88 (36.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D L H +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 189 SPVLRIIIDNMYYPVTLDVL----HQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 243
Query: 73 AAVEKMQGFPFYDK--PMRIQYAK 94
A + G Y+ +RI ++K
Sbjct: 244 QAKLALDGQNIYNACCTLRIDFSK 267
Score = 80 (33.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 163 IPEAPAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
+P A N +L V N+ + TP +L F + + V+++ K A ++ D Q+
Sbjct: 345 MPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQS 404
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + +T +K
Sbjct: 405 QLAMNHLNGQKMYGKIIRVTLSK 427
>SGD|S000000323 [details] [associations]
symbol:MUD1 "U1 snRNP A protein" species:4932 "Saccharomyces
cerevisiae" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] [GO:0030619 "U1 snRNA
binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IEA;IGI;ISS] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IGI]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000000323
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006936 EMBL:X78993
GO:GO:0000398 eggNOG:COG0724 GO:GO:0071004 GO:GO:0005685
PANTHER:PTHR10501 GO:GO:0030619 OrthoDB:EOG4TB7MX EMBL:X71061
EMBL:Z35988 PIR:A46301 RefSeq:NP_009677.1 ProteinModelPortal:P32605
SMR:P32605 DIP:DIP-223N IntAct:P32605 MINT:MINT-525465
STRING:P32605 PaxDb:P32605 EnsemblFungi:YBR119W GeneID:852416
KEGG:sce:YBR119W CYGD:YBR119w HOGENOM:HOG000142015 OMA:SHELAQS
NextBio:971273 Genevestigator:P32605 GermOnline:YBR119W
Uniprot:P32605
Length = 298
Score = 101 (40.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN +L +QN+P TT L E+R+V + +AFVEY AT L
Sbjct: 224 PPNKVLLIQNLPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETVADATKIKNQL 281
Query: 229 QSL-KIGQQQLLITYAK 244
S K+ + I +AK
Sbjct: 282 GSTYKLQNNDVTIGFAK 298
Score = 57 (25.1 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 12 ISPNNTIYIN-NL---NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
I+PNN IN +L + K++I Q L + Q G +LE+ ++ K QA+L F
Sbjct: 27 INPNNKYAINPSLPLPHNKLQISS--QPLMLLDDQMG-LLEVSISRSSKMTNQAFLTFVT 83
Query: 68 VASATAAVEKMQ--GFPFYDKPMRIQYAKTKS 97
A +EK + +R+ A+T S
Sbjct: 84 QEEADRFLEKYTTTALKVQGRKVRMGKARTNS 115
>ZFIN|ZDB-GENE-030131-9796 [details] [associations]
symbol:ptbp1b "polypyrimidine tract binding
protein 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-9796
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BC091854 IPI:IPI00613822
UniGene:Dr.75263 ProteinModelPortal:Q58EL3 STRING:Q58EL3
InParanoid:Q58EL3 ArrayExpress:Q58EL3 Bgee:Q58EL3 Uniprot:Q58EL3
Length = 586
Score = 92 (37.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP + + NL V +D L H +F +FGT+L+++ F T ++ QA L F D +A
Sbjct: 210 SPVLRVIVENLFYPVTLDVL----HQIFSKFGTVLKVITF-TKNNQFQALLQFTDGLTAQ 264
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +RI ++K S
Sbjct: 265 HAKLALDGQNIYNGCCTLRISFSKLTS 291
Score = 75 (31.5 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 173 ILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL 231
++ V N+ P TP L + F + V+++ K A ++ D QA +AM L
Sbjct: 393 VMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSHLNGQ 452
Query: 232 KIGQQQLLITYAK 244
K+ + L IT +K
Sbjct: 453 KLYGRPLRITLSK 465
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 98 (39.6 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 26/96 (27%), Positives = 51/96 (53%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N +++ NL+ V ++L +F +FG I ++ KG A++V++DV A A
Sbjct: 12 NRALFVKNLSYNVTPEELFD----LFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQA 67
Query: 75 VEKMQGFPFYDKPMRIQY------AKTKSDIIAKAD 104
+K+ GF F ++ + + Y A++K D+ A+ +
Sbjct: 68 CDKLNGFNFQNRYLVVLYHQPEKMARSKEDLEARKE 103
Score = 96 (38.9 bits), Expect = 0.00014, P = 0.00014
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 168 APP-NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVA 224
AP N LFV+N+ ++ TP L F +F ++VR A G AFV Y D M A A
Sbjct: 8 APEVNRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQA 67
Query: 225 MQSLQSLKIGQQQLLITY 242
L + L++ Y
Sbjct: 68 CDKLNGFNFQNRYLVVLY 85
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 87 (35.7 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 22/84 (26%), Positives = 46/84 (54%)
Query: 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP-----GIAFVEYGDEMQA 221
P P++ + ++N+P ++T ++ F+ + + VR + KP G FVE+ E +A
Sbjct: 790 PNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVR-IPKKPNGGHRGFGFVEFLTEEEA 848
Query: 222 TVAMQSLQSLKIGQQQLLITYAKK 245
AM++L + + L++ YA++
Sbjct: 849 KNAMEALGNSHFYGRHLVLQYAEQ 872
Score = 81 (33.6 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 22/92 (23%), Positives = 45/92 (48%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHK 58
E + + ++ + I++ NL+ K ++ L VF +FG I EI + + + K K
Sbjct: 347 EHDYTKEDEDVGESGRIFVRNLSYSTK----EEDLEKVFSKFGKISEIHIPIDYDSKKSK 402
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90
G A++++ +A A+ M G F + + +
Sbjct: 403 GIAFILYLIPENAVQALNDMDGKVFQGRLIHV 434
Score = 78 (32.5 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230
N +L V+N+P T L FS+F V + A+ IA +EY +A V ++L
Sbjct: 552 NTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPART-IALIEYIHPNEAKVGFKNLAY 610
Query: 231 LKIGQQQLLITYA 243
K L + +A
Sbjct: 611 SKFHHVPLYLEWA 623
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 116 (45.9 bits), Expect = 0.00010, P = 0.00010
Identities = 26/96 (27%), Positives = 54/96 (56%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHK 58
EP+ A +G+E + N ++++ + +++ D+L+Q +F +FGT+ + + T +
Sbjct: 88 EPQSAPEGSE-NLGNDLFVSGIASRMQEDELQQ----IFSKFGTVTHVRIMREPVTKASR 142
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94
G +L F V AT+A++ + FY + + +Q AK
Sbjct: 143 GFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
>UNIPROTKB|F1NFC5 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 OMA:REMEIEN EMBL:AADN02013197
EMBL:AADN02013196 IPI:IPI00597936 Ensembl:ENSGALT00000007718
Uniprot:F1NFC5
Length = 412
Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL--KHKGQAWLVFKDVASA 71
PN +Y+ NL +V + + SL A F+Q T ++ F+ L + +GQA++ F D+ SA
Sbjct: 310 PNKVLYVKNLGPRVTMKDMV-SLFARFQQDSTPIQ---FRLLSGRMRGQAFITFPDIQSA 365
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTK 96
A+ + G+ KPM I++ K+K
Sbjct: 366 QDAMLLVNGYRLQGKPMVIEFGKSK 390
>FB|FBgn0035692 [details] [associations]
symbol:CG13298 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0048812 "neuron projection morphogenesis"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005686 "U2 snRNP"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:AY089603
RefSeq:NP_648037.1 UniGene:Dm.1519 ProteinModelPortal:Q9VRV7
SMR:Q9VRV7 DIP:DIP-21174N IntAct:Q9VRV7 MINT:MINT-921416
STRING:Q9VRV7 PaxDb:Q9VRV7 PRIDE:Q9VRV7 EnsemblMetazoa:FBtr0077015
GeneID:38720 KEGG:dme:Dmel_CG13298 UCSC:CG13298-RA
FlyBase:FBgn0035692 InParanoid:Q9VRV7 OrthoDB:EOG4DV43Q
PhylomeDB:Q9VRV7 GenomeRNAi:38720 NextBio:810039 Bgee:Q9VRV7
GermOnline:CG13298 Uniprot:Q9VRV7
Length = 121
Score = 96 (38.9 bits), Expect = 0.00014, P = 0.00014
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N +Y+ NL K+ D++ + +F +FG I +I T + +G A++V++D+ A A
Sbjct: 14 NRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 69
Query: 75 VEKMQGFPFYDKPMRIQY 92
+ + GF ++ + + Y
Sbjct: 70 CDHLSGFNVCNRYLVVLY 87
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 96 (38.9 bits), Expect = 0.00014, P = 0.00014
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 12 ISPNNT---IYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEI-LAFKTLKHKGQAWLVF 65
+S NN +++ ++E ID+ +SL+ +F FG I +E+ L T K++G A++ +
Sbjct: 1 MSDNNATDILFVGGIDET--IDE--KSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEY 56
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTK 96
+V A A+ M F K + + Y+KTK
Sbjct: 57 VEVDDAKHALYNMNNFELNGKRIHVNYSKTK 87
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 96 (38.9 bits), Expect = 0.00014, P = 0.00014
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 12 ISPNNT---IYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEI-LAFKTLKHKGQAWLVF 65
+S NN +++ ++E ID+ +SL+ +F FG I +E+ L T K++G A++ +
Sbjct: 1 MSDNNATDILFVGGIDET--IDE--KSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEY 56
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTK 96
+V A A+ M F K + + Y+KTK
Sbjct: 57 VEVDDAKHALYNMNNFELNGKRIHVNYSKTK 87
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 96 (38.9 bits), Expect = 0.00014, P = 0.00014
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 169 PP--NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMV--EAKPGIAFVEYGDEMQATVA 224
PP N +L+V+N+P + T + F ++ +++R+ +A G AFV Y D A A
Sbjct: 14 PPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNA 73
Query: 225 MQSLQSLKIGQQQLLITY 242
+ L + + L++ Y
Sbjct: 74 VDHLSGFNVANRYLIVLY 91
>ASPGD|ASPL0000065410 [details] [associations]
symbol:AN7456 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACD01000129 EMBL:BN001304 eggNOG:COG0724
HOGENOM:HOG000276232 KO:K12833 OrthoDB:EOG4HB1W3 RefSeq:XP_680725.1
ProteinModelPortal:Q5AW74 SMR:Q5AW74 STRING:Q5AW74
EnsemblFungi:CADANIAT00000549 GeneID:2869562 KEGG:ani:AN7456.2
Uniprot:Q5AW74
Length = 172
Score = 108 (43.1 bits), Expect = 0.00015, P = 0.00015
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N +++ NLN V +QL +F +FG I +I KG A++V++DV A A
Sbjct: 69 NRILFVKNLNYNVTAEQLFD----LFGKFGPIRQIRQGIANNSKGTAFVVYEDVHDAKQA 124
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
+K+ GF F ++ + + Y + + + +K D
Sbjct: 125 CDKLNGFNFQNRYLVVLYHQPEKMLKSKED 154
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 84 (34.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAFKTLKHKGQ 60
PEV + +TI++ NL+ KV +LK+ VF GT+ +I K K +G
Sbjct: 170 PEVISNLQAGRLGSTIFVANLDFKVGWKKLKE----VFSIAGTVKRADIKEDKDGKSRGM 225
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+ F+ A A+ G +D+PM ++
Sbjct: 226 GTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 256
Score = 77 (32.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 156 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAKP-GIAF 212
PG + E N +FV+N+P D T L+ FSQ F E++M K G
Sbjct: 448 PGPMGGAMKERLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGT 507
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQL 238
V + A A + + +KI +++
Sbjct: 508 VRFDSPESAEKACRIMNGIKISGREI 533
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 84 (34.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAFKTLKHKGQ 60
PEV + +TI++ NL+ KV +LK+ VF GT+ +I K K +G
Sbjct: 238 PEVISNLQAGRLGSTIFVANLDFKVGWKKLKE----VFSIAGTVKRADIKEDKDGKSRGM 293
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+ F+ A A+ G +D+PM ++
Sbjct: 294 GTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 324
Score = 77 (32.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 156 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAKP-GIAF 212
PG + E N +FV+N+P D T L+ FSQ F E++M K G
Sbjct: 523 PGPMGGAMKERLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGT 582
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQL 238
V + A A + + +KI +++
Sbjct: 583 VRFDSPESAEKACRIMNGIKISGREI 608
>UNIPROTKB|E1BW94 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AADN02018477 IPI:IPI00572573 RefSeq:XP_419986.1
UniGene:Gga.2001 ProteinModelPortal:E1BW94 SMR:E1BW94 PRIDE:E1BW94
Ensembl:ENSGALT00000026618 GeneID:421976 KEGG:gga:421976
NextBio:20824670 Uniprot:E1BW94
Length = 125
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 1 MEPEVANQGN-EISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH 57
M + A + N + P N +YI NL K+ +++ + +F ++G I +I T +
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPET 56
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92
+G A++V++D+ A A + + GF ++ + + Y
Sbjct: 57 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91
>UNIPROTKB|Q2KIQ7 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
GeneTree:ENSGT00390000005908 CTD:51639 HOVERGEN:HBG039634
OrthoDB:EOG4X0MTT EMBL:DAAA02031677 EMBL:BC112548 IPI:IPI00698072
RefSeq:NP_001039482.1 UniGene:Bt.45988 SMR:Q2KIQ7 STRING:Q2KIQ7
Ensembl:ENSBTAT00000004418 GeneID:508876 KEGG:bta:508876
InParanoid:Q2KIQ7 NextBio:20868714 Uniprot:Q2KIQ7
Length = 125
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 1 MEPEVANQGN-EISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH 57
M + A + N + P N +YI NL K+ +++ + +F ++G I +I T +
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPET 56
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92
+G A++V++D+ A A + + GF ++ + + Y
Sbjct: 57 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91
>UNIPROTKB|E2RRA3 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AAEX03010780 RefSeq:XP_532889.1 ProteinModelPortal:E2RRA3
SMR:E2RRA3 PRIDE:E2RRA3 Ensembl:ENSCAFT00000006355 GeneID:475682
KEGG:cfa:475682 NextBio:20851470 Uniprot:E2RRA3
Length = 125
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 1 MEPEVANQGN-EISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH 57
M + A + N + P N +YI NL K+ +++ + +F ++G I +I T +
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPET 56
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92
+G A++V++D+ A A + + GF ++ + + Y
Sbjct: 57 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91
>UNIPROTKB|Q9Y3B4 [details] [associations]
symbol:SF3B14 "Pre-mRNA branch site protein p14"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
EMBL:AF401310 EMBL:AF151868 EMBL:AF161523 EMBL:AF184213
EMBL:BC015463 IPI:IPI00032827 RefSeq:NP_057131.1 UniGene:Hs.177861
PDB:2F9D PDB:2F9J PDB:2FHO PDB:3LQV PDBsum:2F9D PDBsum:2F9J
PDBsum:2FHO PDBsum:3LQV ProteinModelPortal:Q9Y3B4 SMR:Q9Y3B4
IntAct:Q9Y3B4 MINT:MINT-3085643 STRING:Q9Y3B4 PhosphoSite:Q9Y3B4
DMDM:12585536 PaxDb:Q9Y3B4 PeptideAtlas:Q9Y3B4 PRIDE:Q9Y3B4
DNASU:51639 GeneID:51639 KEGG:hsa:51639 UCSC:uc002rev.3 CTD:51639
GeneCards:GC02M024290 HPA:HPA034829 HPA:HPA034830 MIM:607835
neXtProt:NX_Q9Y3B4 HOVERGEN:HBG039634 InParanoid:Q9Y3B4
OrthoDB:EOG4X0MTT PhylomeDB:Q9Y3B4 EvolutionaryTrace:Q9Y3B4
GenomeRNAi:51639 NextBio:55577 ArrayExpress:Q9Y3B4 Bgee:Q9Y3B4
Genevestigator:Q9Y3B4 GermOnline:ENSG00000115128 Uniprot:Q9Y3B4
Length = 125
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 1 MEPEVANQGN-EISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH 57
M + A + N + P N +YI NL K+ +++ + +F ++G I +I T +
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPET 56
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92
+G A++V++D+ A A + + GF ++ + + Y
Sbjct: 57 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91
>UNIPROTKB|F2Z5F1 [details] [associations]
symbol:LOC100521960 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:CU928810
RefSeq:XP_003125412.1 ProteinModelPortal:F2Z5F1 SMR:F2Z5F1
PRIDE:F2Z5F1 Ensembl:ENSSSCT00000009397 GeneID:100521960
KEGG:ssc:100521960 Uniprot:F2Z5F1
Length = 125
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 1 MEPEVANQGN-EISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH 57
M + A + N + P N +YI NL K+ +++ + +F ++G I +I T +
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPET 56
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92
+G A++V++D+ A A + + GF ++ + + Y
Sbjct: 57 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91
>MGI|MGI:1913305 [details] [associations]
symbol:0610009D07Rik "RIKEN cDNA 0610009D07 gene"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1913305
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908
HOVERGEN:HBG039634 OrthoDB:EOG4X0MTT EMBL:AK002375 EMBL:AK003683
EMBL:AK151648 EMBL:BC019535 IPI:IPI00117687 RefSeq:NP_079599.1
UniGene:Mm.102627 ProteinModelPortal:P59708 SMR:P59708
STRING:P59708 PhosphoSite:P59708 PaxDb:P59708 PRIDE:P59708
Ensembl:ENSMUST00000046207 GeneID:66055 KEGG:mmu:66055
UCSC:uc007myi.1 InParanoid:P59708 NextBio:320494 Bgee:P59708
CleanEx:MM_0610009D07RIK Genevestigator:P59708
GermOnline:ENSMUSG00000037361 Uniprot:P59708
Length = 125
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 1 MEPEVANQGN-EISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH 57
M + A + N + P N +YI NL K+ +++ + +F ++G I +I T +
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPET 56
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92
+G A++V++D+ A A + + GF ++ + + Y
Sbjct: 57 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91
>ZFIN|ZDB-GENE-040625-36 [details] [associations]
symbol:sf3b14 "splicing factor 3B" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
HOVERGEN:HBG039634 OrthoDB:EOG4X0MTT EMBL:BX510920 EMBL:BC071385
IPI:IPI00495681 RefSeq:NP_001002067.1 UniGene:Dr.3658 SMR:Q6IQM0
STRING:Q6IQM0 Ensembl:ENSDART00000017485 GeneID:415157
KEGG:dre:415157 InParanoid:Q6IQM0 NextBio:20818830 Uniprot:Q6IQM0
Length = 125
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 1 MEPEVANQGN-EISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH 57
M + A + N + P N +YI NL K+ +++ + +F ++G I +I T +
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPET 56
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92
+G A++V++D+ A A + + GF ++ + + Y
Sbjct: 57 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 91
>ZFIN|ZDB-GENE-091116-1 [details] [associations]
symbol:ptbp3 "polypyrimidine tract binding protein 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-091116-1 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:9991
OMA:PPSVTMD EMBL:BX510369 EMBL:CR931761 IPI:IPI00493597
RefSeq:XP_001335967.1 UniGene:Dr.40305 Ensembl:ENSDART00000040308
Ensembl:ENSDART00000146727 GeneID:798982 KEGG:dre:798982
NextBio:20933630 Uniprot:E7FB37
Length = 522
Score = 91 (37.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V ++ L H +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 150 SPVLRIIVENLYYPVSLEVL----HQIFSKFGTVLKIITF-TKNNQFQALLQYADPMNAH 204
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS 97
A + G Y+ +R++++K S
Sbjct: 205 HAKVALDGQNIYNGCCTLRVEFSKLTS 231
Score = 66 (28.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/99 (24%), Positives = 48/99 (48%)
Query: 149 PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF--KEVRMVEA 206
PL + PG +K+ + PP+ L + N+P TT L+ F+ G+ K + +
Sbjct: 425 PLHRFKKPG-SKNF--QNIFPPSATLHLSNIPPSTTDDFLKDLFAS-SGYTVKAFKFFQK 480
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
+A ++ G +A A+ L + +G+ L ++++K
Sbjct: 481 DRKMALIQLGSVEEAIQALIHLHNHDLGENHHLRVSFSK 519
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 89 (36.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAFKTLKHKGQ 60
PEV N +TI++ NL+ KV +LK+ VF GT+ +I K K +G
Sbjct: 211 PEVINNLQAGRLGSTIFVANLDFKVGWKKLKE----VFSIAGTVKRADIKEDKDGKSRGM 266
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+ F+ A A+ G +D+PM ++
Sbjct: 267 GTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 297
Score = 69 (29.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAKP-GIAFVEYGDEMQATVAMQSL 228
N +FV+N+P D T L+ FSQ F E++M K G V + A A + +
Sbjct: 490 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIM 549
Query: 229 QSLKIGQQQL 238
+KI +++
Sbjct: 550 NGIKISGREI 559
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAFKTLKHKGQ 60
PEV N +TI++ NL+ KV +LK+ VF GT+ +I K K +G
Sbjct: 211 PEVINNLQAGRLGSTIFVANLDFKVGWKKLKE----VFSIAGTVKRADIKEDKDGKSRGM 266
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+ F+ A A+ G +D+PM ++
Sbjct: 267 GTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 297
Score = 69 (29.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAKP-GIAFVEYGDEMQATVAMQSL 228
N +FV+N+P D T L+ FSQ F E++M K G V + A A + +
Sbjct: 497 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIM 556
Query: 229 QSLKIGQQQL 238
+KI +++
Sbjct: 557 NGIKISGREI 566
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 89 (36.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAFKTLKHKGQ 60
PEV N +TI++ NL+ KV +LK+ VF GT+ +I K K +G
Sbjct: 211 PEVINNLQAGRLGSTIFVANLDFKVGWKKLKE----VFSIAGTVKRADIKEDKDGKSRGM 266
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+ F+ A A+ G +D+PM ++
Sbjct: 267 GTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 297
Score = 69 (29.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAKP-GIAFVEYGDEMQATVAMQSL 228
N +FV+N+P D T L+ FSQ F E++M K G V + A A + +
Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIM 573
Query: 229 QSLKIGQQQL 238
+KI +++
Sbjct: 574 NGIKISGREI 583
>DICTYBASE|DDB_G0286297 [details] [associations]
symbol:DDB_G0286297 "putative splicing factor 3B 14
kDa subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286297 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000085 eggNOG:COG0724
KO:K12833 OMA:YQSTKAF RefSeq:XP_637842.1 ProteinModelPortal:Q54LY9
SMR:Q54LY9 STRING:Q54LY9 EnsemblProtists:DDB0233775 GeneID:8625556
KEGG:ddi:DDB_G0286297 InParanoid:Q54LY9 Uniprot:Q54LY9
Length = 117
Score = 92 (37.4 bits), Expect = 0.00038, P = 0.00038
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N +Y+ NL K+ ++L + +F +G I +I T + G A++V++D+ A A
Sbjct: 15 NRILYVKNLPFKISSEEL----YGIFSNYGAIRQIRLGNTTETMGTAFVVYEDIFDARNA 70
Query: 75 VEKMQGFPFYDKPMRIQY 92
E + G+ ++ + + Y
Sbjct: 71 CEHLSGYNVNNRYLVVLY 88
Score = 92 (37.4 bits), Expect = 0.00038, P = 0.00038
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 163 IPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDEMQ 220
+ + P N IL+V+N+P + L FS + +++R+ G AFV Y D
Sbjct: 7 VSKLPPEINRILYVKNLPFKISSEELYGIFSNYGAIRQIRLGNTTETMGTAFVVYEDIFD 66
Query: 221 ATVAMQSLQSLKIGQQQLLITY 242
A A + L + + L++ Y
Sbjct: 67 ARNACEHLSGYNVNNRYLVVLY 88
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 88 (36.0 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230
N +FV + + T L+ F+QF V++ K G FV++ D A A+Q L
Sbjct: 294 NTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK-GCGFVQFSDRSSAQEAIQKLSG 352
Query: 231 LKIGQQQLLITYAK 244
IG+Q + +++ +
Sbjct: 353 AIIGKQAVRLSWGR 366
Score = 66 (28.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA----WLVFKDVAS 70
N TI+I +L + + D+ LH+ F Q G ++ + + K GQ+ ++ F A+
Sbjct: 83 NKTIWIGDLQQWM--DE--SYLHSCFSQAGEVISVKIIRN-KQTGQSERYGFVEFNTHAA 137
Query: 71 ATAAVEKMQG--FPFYDKPMRIQYA 93
A ++ G P ++P R+ +A
Sbjct: 138 AEKVLQSYNGTMMPNTEQPFRLNWA 162
>UNIPROTKB|F1PIN4 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022252 Uniprot:F1PIN4
Length = 437
Score = 84 (34.6 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAFKTLKHKGQ 60
PEV + +TI++ NL+ KV +LK+ VF GT+ +I K K +G
Sbjct: 60 PEVISNLQAGRLGSTIFVANLDFKVGWKKLKE----VFSIAGTVKRADIKEDKDGKSRGM 115
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+ F+ A A+ G +D+PM ++
Sbjct: 116 GTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 146
Score = 70 (29.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAKP-GIAFVEYGDEMQATVAMQSL 228
N +FV+N+P D T L+ FSQ F E++M K G V + A A + +
Sbjct: 360 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 419
Query: 229 QSLKIGQQQL 238
+KI +++
Sbjct: 420 NGIKISGREI 429
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 90 (36.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 1 MEPEVANQG--NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHK 58
M P N+G ++ P ++ N+N + ++++ H +F QFG + A K + +K
Sbjct: 160 MAPHYQNKGAGGQLEPTKIVWAGNINPESTEEEVR---H-LFSQFGYLQ---AIKIIPNK 212
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKS 97
A++ F DV A A + G F P+++ + K ++
Sbjct: 213 QCAFITFADVNCAIQAQFNLNGTIFRGLPLKLGFGKVEN 251
Score = 68 (29.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 20/82 (24%), Positives = 33/82 (40%)
Query: 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
P P L++ NV + + L+ F QF +R++ + G AFV + A
Sbjct: 268 PHQEETPTKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRILHGR-GCAFVNFFTVESAAA 326
Query: 224 AMQSLQSLKIGQQQLLITYAKK 245
A L + L I + K+
Sbjct: 327 ARNGLNGTMVCGMPLKINFRKE 348
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 83 (34.3 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 28/100 (28%), Positives = 46/100 (46%)
Query: 9 GNEISPNNT-IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLV 64
GN P I++ +L+ +++ QLK + F FG I + + TLK KG ++
Sbjct: 88 GNNSKPEQFHIFVGDLSAEIETQQLKDA----FTPFGEISDCRVVRDPQTLKSKGYGFVS 143
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
F + A A+ M G + +R +A T+ KAD
Sbjct: 144 FVKKSEAETAITAMNGQWLGSRSIRTNWA-TRKPPATKAD 182
Score = 73 (30.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
LQ FS + +E+R+ + K G AFV + + AT A+ ++ + +I QQ + + K+
Sbjct: 222 LQKTFSPYGTIQEIRVFKDK-GYAFVRFSTKEAATHAIVAVNNTEINQQPVKCAWGKE 278
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 111 (44.1 bits), Expect = 0.00056, P = 0.00056
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQS 227
APP+ +LFV+++P + A + F PG+ M+ KP AFVE+ D AT+AM
Sbjct: 6 APPSRVLFVKDIPQRVSYDAFENLFKSLPGYL---MMRRKPHFAFVEFKDREFATMAMIK 62
Query: 228 LQSLKI 233
KI
Sbjct: 63 FTGYKI 68
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 84 (34.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAFKTLKHKGQ 60
PEV + +TI++ NL+ KV +LK+ VF GT+ +I K K +G
Sbjct: 169 PEVISNLQAGRLGSTIFVANLDFKVGWKKLKE----VFSIAGTVKRADIKEDKDGKSRGM 224
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+ F+ A A+ G +D+PM ++
Sbjct: 225 GTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 255
Score = 70 (29.7 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAKP-GIAFVEYGDEMQATVAMQSL 228
N +FV+N+P D T L+ FSQ F E++M K G V + A A + +
Sbjct: 415 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 474
Query: 229 QSLKIGQQQL 238
+KI +++
Sbjct: 475 NGIKISGREI 484
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 86 (35.3 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
IS +++ NL D LK SL F Q + + KT KG A++ F D A
Sbjct: 319 ISETKRLFLRNLTYSCAEDDLK-SLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDA 377
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDII 100
A ++ PF + + + AK +S I+
Sbjct: 378 VRAYLELDAKPFQGRLLHVLPAKARSSIL 406
Score = 73 (30.8 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 18/83 (21%), Positives = 41/83 (49%)
Query: 165 EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE----AKPGIAFVEYGDEMQ 220
++ P + ++N+P + T +Q + + VR+ + + G AF E+ +
Sbjct: 714 DSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTARE 773
Query: 221 ATVAMQSLQSLKIGQQQLLITYA 243
A AM++L++ + + L++ YA
Sbjct: 774 AANAMRALKNTHLLGRHLVLQYA 796
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 78 (32.5 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE-----AKPGIAFVEYGDE 218
P A + P+ LFV+ + +TT L+ F G R+V + G FV++ E
Sbjct: 218 PNARSQPSKTLFVKGLSEETTEETLK---ESFDGSIRARIVTDRETGSSKGFGFVDFNSE 274
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
A A ++++ +I ++ + +AK
Sbjct: 275 EDAKAAKEAMEDGEIDGNKVTLDWAK 300
Score = 73 (30.8 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVASATAAV 75
T+ NL KV D+LK+ VF+ +EI L K K KG A++ FK A A +
Sbjct: 48 TLLAKNLPYKVTQDELKE----VFED---AVEIRLVSKDGKSKGIAYIEFKTEADAEKTL 100
Query: 76 EKMQGFPFYDKPMRIQYAKTK 96
E+ QG + + + Y K
Sbjct: 101 EEKQGTEIDGRSISLYYTGEK 121
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 86 (35.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP+ TI++ +L V L ++ A + ++ T + KG ++ F D +
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
A+ +M G P +PMRI A +K + + D
Sbjct: 212 RAMTEMNGVPCSTRPMRIGPAASKKGVTGQRD 243
Score = 65 (27.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 20/90 (22%), Positives = 41/90 (45%)
Query: 155 YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVE 214
Y A V + P N +FV + T L+ FSQ+ V++ K FV+
Sbjct: 245 YQSSAAGVTTDND-PNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR-CGFVQ 302
Query: 215 YGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ ++ A A++ L +++G + +++ +
Sbjct: 303 FSEKSCAEEALRMLNGVQLGGTTVRLSWGR 332
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 106 (42.4 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 27/97 (27%), Positives = 50/97 (51%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ T+++ N+N V+ +L A+F+Q+G I + + T KH+G + + D+ SA
Sbjct: 166 PSRTLFVRNINSNVEDSELT----ALFEQYGDIRTL--YTTCKHRGFVMISYYDIRSARM 219
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKA--DGTFV 108
A+ +Q P + + I ++ K + K GT V
Sbjct: 220 AMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLV 256
Score = 49 (22.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
L V N+ + L F KE+R K FVE+ D A A+++L +I
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314
Query: 234 GQQQLLI 240
+++ +
Sbjct: 315 AGKRIKV 321
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 84 (34.6 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAFKTLKHKGQ 60
PEV + +TI++ NL+ KV +LK+ VF GT+ +I K K +G
Sbjct: 220 PEVISNLQAGRLGSTIFVANLDFKVGWKKLKE----VFSIAGTVKRADIKEDKDGKSRGM 275
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+ F+ A A+ G +D+PM ++
Sbjct: 276 GTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 306
Score = 70 (29.7 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAKP-GIAFVEYGDEMQATVAMQSL 228
N +FV+N+P D T L+ FSQ F E++M K G V + A A + +
Sbjct: 466 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 525
Query: 229 QSLKIGQQQL 238
+KI +++
Sbjct: 526 NGIKISGREI 535
>GENEDB_PFALCIPARUM|PFL1200c [details] [associations]
symbol:PFL1200c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 89 (36.4 bits), Expect = 0.00083, P = 0.00083
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRM--VEAKPGIAFVEYGDEMQATVA 224
PA + IL+V+N+P+ + L F ++ +++R E G +FV Y D A A
Sbjct: 9 PAEVSRILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNA 68
Query: 225 MQSLQSLKIGQQQLLITY 242
+ L + + L++ Y
Sbjct: 69 LDHLSGFNVAGRYLVVLY 86
>UNIPROTKB|Q8I5G8 [details] [associations]
symbol:PFL1200c "Splicing factor 3b subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 89 (36.4 bits), Expect = 0.00083, P = 0.00083
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRM--VEAKPGIAFVEYGDEMQATVA 224
PA + IL+V+N+P+ + L F ++ +++R E G +FV Y D A A
Sbjct: 9 PAEVSRILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNA 68
Query: 225 MQSLQSLKIGQQQLLITY 242
+ L + + L++ Y
Sbjct: 69 LDHLSGFNVAGRYLVVLY 86
>TAIR|locus:2163746 [details] [associations]
symbol:PTB2 "AT5G53180" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0006417
"regulation of translation" evidence=IEP] [GO:0043484 "regulation
of RNA splicing" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0009845 "seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 GO:GO:0009846 EMBL:AB025622
HOGENOM:HOG000238077 KO:K14948 EMBL:BT015760 EMBL:BT020199
IPI:IPI00533493 RefSeq:NP_200130.1 UniGene:At.43107
ProteinModelPortal:Q9FGL9 SMR:Q9FGL9 IntAct:Q9FGL9 STRING:Q9FGL9
PaxDb:Q9FGL9 PRIDE:Q9FGL9 EnsemblPlants:AT5G53180.1 GeneID:835399
KEGG:ath:AT5G53180 GeneFarm:5075 TAIR:At5g53180 eggNOG:NOG263807
InParanoid:Q9FGL9 OMA:KKMEPES PhylomeDB:Q9FGL9
ProtClustDB:CLSN2720458 Genevestigator:Q9FGL9 GermOnline:AT5G53180
Uniprot:Q9FGL9
Length = 429
Score = 86 (35.3 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 169 PPNNILF--VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI-AFVEYGDEMQATVAM 225
P +N+L ++N+ + T L M F+ F +++ M + G+ A ++Y D A VA
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAK 300
Query: 226 QSLQSLKI---GQQQLLITYAK 244
++L+ I G +L ITY++
Sbjct: 301 EALEGHCIYDGGFCKLHITYSR 322
Score = 65 (27.9 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKG-QAWLVFKDVASATAAVEKMQG 80
LH VF FG + +I F+ K G QA + F D +ATAA + G
Sbjct: 130 LHLVFSAFGFVHKITTFE--KTAGYQALVQFTDAETATAAKLALDG 173
>RGD|727953 [details] [associations]
symbol:Smptb "polypyrimidine tract-binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:727953
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000380 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ HSSP:P26599 EMBL:CH474078 EMBL:AY223520
IPI:IPI00331913 RefSeq:NP_877970.1 UniGene:Rn.97598 SMR:Q80XZ1
Ensembl:ENSRNOT00000014611 GeneID:302879 KEGG:rno:302879
UCSC:RGD:727953 CTD:302879 NextBio:650282 Genevestigator:Q80XZ1
Uniprot:Q80XZ1
Length = 588
Score = 79 (32.9 bits), Expect = 0.00089, Sum P(2) = 0.00088
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + N +V ++ L H +F +FGT+L+I+ T ++ QA L + V SA
Sbjct: 187 SPVLRILVENYFYRVTLEVL----HQIFSRFGTVLKIITC-TKNNRFQALLQYAHVMSAE 241
Query: 73 AAVEKMQGFPFYDK--PMRIQYA 93
A + G YD +RI ++
Sbjct: 242 RAKLFLDGQNIYDACCTLRISFS 264
Score = 76 (31.8 bits), Expect = 0.00089, Sum P(2) = 0.00088
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 156 PGGAKSVIPE-APAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
PG S++ +P + +L V N+ + TP +L + F + V+++ + A V
Sbjct: 377 PGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALV 436
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +A++ L K+ + L I +K
Sbjct: 437 QMADGSQAELALRHLNGHKLYGKALCILLSK 467
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 89 (36.4 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL---KHKGQAWLVFKDVASA 71
N ++Y+ +L+ V QL + F Q GT++ + + L + G ++ F + A
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDA----FGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDA 90
Query: 72 TAAVEKMQGFPFYDKPMRIQYA 93
A++++ P Y KP+R+ Y+
Sbjct: 91 ARAIQELNYIPLYGKPIRVMYS 112
Score = 65 (27.9 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRM-VEAK---PGIAFVEYGDEMQATVAMQSLQ 229
+F++N+ AL FS F ++ V++ G FV+Y +E A A++ L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 230 SLKIGQQQLLI 240
+ + +Q+ +
Sbjct: 186 GMLLNDKQVYV 196
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 245 222 0.00096 112 3 11 22 0.41 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 118
No. of states in DFA: 573 (61 KB)
Total size of DFA: 159 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.82u 0.08s 18.90t Elapsed: 00:00:01
Total cpu time: 18.84u 0.08s 18.92t Elapsed: 00:00:01
Start: Sat May 11 11:03:10 2013 End: Sat May 11 11:03:11 2013
WARNINGS ISSUED: 1