BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025982
(245 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224068352|ref|XP_002302719.1| predicted protein [Populus trichocarpa]
gi|222844445|gb|EEE81992.1| predicted protein [Populus trichocarpa]
Length = 251
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 183/240 (76%), Positives = 211/240 (87%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
++ G E+S N TIYINNLNEK+KID+LK++LHAVF QFG ILEILAFKTLKHKGQAW+VF
Sbjct: 12 SSTGTEVSSNMTIYINNLNEKIKIDELKKALHAVFSQFGKILEILAFKTLKHKGQAWVVF 71
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
+DV SA+ A+ +MQ FPFYDKPMRIQYAKTKSDI+AKADGTFVPRE+R+RHEEKGKK+KD
Sbjct: 72 EDVQSASNAMRQMQSFPFYDKPMRIQYAKTKSDIVAKADGTFVPREKRRRHEEKGKKKKD 131
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
QHD NQ G+GL PAY GAYG TPPLSQIPY GG KS++PEAPAPPNNILF+QN+P++TT
Sbjct: 132 QHDTNQVGVGLTPAYGGAYGTTPPLSQIPYLGGVKSMVPEAPAPPNNILFIQNLPNETTT 191
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
M LQM F Q+ GFKEVRMVE KPGIAFVEYGDEMQ+TVAM +LQ K+ Q +LITYAKK
Sbjct: 192 MMLQMLFQQYAGFKEVRMVETKPGIAFVEYGDEMQSTVAMHALQGFKLQQNSMLITYAKK 251
>gi|118485733|gb|ABK94716.1| unknown [Populus trichocarpa]
Length = 254
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/238 (78%), Positives = 210/238 (88%), Gaps = 1/238 (0%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G ++S N TIYINNLNEK+KID+LK SLHAVF QFG ILEILAFKTLKHKGQAW++F+DV
Sbjct: 17 GTDVSQNMTIYINNLNEKIKIDELKTSLHAVFSQFGKILEILAFKTLKHKGQAWVIFEDV 76
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
SA+ A+ +MQ FPFYDKPMRIQYAKTKSDIIAKADGTFVPRE+R+RHEEKGKK+KDQHD
Sbjct: 77 QSASNAIRQMQSFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRRRHEEKGKKKKDQHD 136
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
ANQ G+GL PAY GAYG TP L QIPYPGG KS++PEAPAPPNNILF+QN+P++TTPM L
Sbjct: 137 ANQVGVGLTPAYGGAYGTTPSLLQIPYPGGVKSMVPEAPAPPNNILFIQNLPNETTPMML 196
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
QM F Q+PGFKEVRMVEAKPGIAFVEYGDEMQ+T AM LQ KI QQ +LITYAKK
Sbjct: 197 QMLFQQYPGFKEVRMVEAKPGIAFVEYGDEMQSTGAMHGLQGFKILQQNSMLITYAKK 254
>gi|217072842|gb|ACJ84781.1| unknown [Medicago truncatula]
Length = 245
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/233 (79%), Positives = 214/233 (91%), Gaps = 2/233 (0%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N TIYINNLNEK+KID+LK+SLHAVF QFG ILE+LAFKTLKHKGQAW++F+DV SA+ A
Sbjct: 13 NMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSASNA 72
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDANQAG 133
+ +MQGFPFYDKPMRIQYA+TKSD+IAKA+GTFVPRE+RKRH++K GKKRKDQ+DAN AG
Sbjct: 73 LRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGKKRKDQNDANLAG 132
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
GLNPAYAGAYGATP LSQIPYPGGAKS++PEAPAPPNNILF+QN+P++TTPM LQM F
Sbjct: 133 TGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMMLQMLFL 192
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
Q+PGFKEVRMVEAKPGIAFVEYGDEMQ+T+AMQ+LQ KI Q +LITYAKK
Sbjct: 193 QYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLITYAKK 245
>gi|255564206|ref|XP_002523100.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
gi|223537662|gb|EEF39285.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
Length = 254
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/240 (79%), Positives = 217/240 (90%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
N GNEISPN TIYINNLNEK+K+D+LK+SLHAVF QFG I+EILAFKTLKHKGQAW+VF
Sbjct: 15 VNTGNEISPNMTIYINNLNEKIKLDELKKSLHAVFSQFGKIIEILAFKTLKHKGQAWVVF 74
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
+DV SAT A+ +MQ FPFYDKPMRI +AKTKSD+IAKADGTFVPRE+RKRHEEKGK++K+
Sbjct: 75 EDVQSATNAIRQMQSFPFYDKPMRIHFAKTKSDVIAKADGTFVPREKRKRHEEKGKRKKE 134
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
QHDANQAG+G+ PAYAGAYGATPPLSQIPYPGGAKS++PEAPAPPNNILF+QN+P+DTT
Sbjct: 135 QHDANQAGIGMAPAYAGAYGATPPLSQIPYPGGAKSMVPEAPAPPNNILFIQNLPNDTTT 194
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
M LQM F + GFKEVRMVE+KPGIAFVEY DEMQ+TVAMQ LQ LKI Q +LITYAKK
Sbjct: 195 MVLQMLFQHYAGFKEVRMVESKPGIAFVEYADEMQSTVAMQGLQGLKIQQNPMLITYAKK 254
>gi|388497184|gb|AFK36658.1| unknown [Medicago truncatula]
Length = 232
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/231 (80%), Positives = 213/231 (92%), Gaps = 2/231 (0%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
TIYINNLNEK+KID+LK+SLHAVF QFG ILE+LAFKTLKHKGQAW++F+DV SA+ A+
Sbjct: 2 TIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSASNALR 61
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDANQAGMG 135
+MQGFPFYDKPMRIQYA+TKSD+IAKA+GTFVPRE+RKRH++K GKKRKDQ+DAN AG G
Sbjct: 62 QMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGKKRKDQNDANLAGTG 121
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQF 195
LNPAYAGAYGATP LSQIPYPGGAKS++PEAPAPPNNILF+QN+P++TTPM LQM F Q+
Sbjct: 122 LNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMMLQMLFLQY 181
Query: 196 PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
PGFKEVRMVEAKPGIAFVEYGDEMQ+T+AMQ+LQ KI Q +LITYAKK
Sbjct: 182 PGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLITYAKK 232
>gi|224128458|ref|XP_002320337.1| predicted protein [Populus trichocarpa]
gi|222861110|gb|EEE98652.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/230 (80%), Positives = 205/230 (89%), Gaps = 1/230 (0%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
TIYINNLNEK+KID+LK SLHAVF QFG ILEILAFKTLKHKGQAW++F+DV SA+ A+
Sbjct: 2 TIYINNLNEKIKIDELKTSLHAVFSQFGKILEILAFKTLKHKGQAWVIFEDVQSASNAIR 61
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
+MQ FPFYDKPMRIQYAKTKSDIIAKADGTFVPRE+R+RHEEKGKK+KDQHDANQ G+GL
Sbjct: 62 QMQSFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRRRHEEKGKKKKDQHDANQVGVGL 121
Query: 137 NPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP 196
PAY GAYG TP L QIPYPGG KS++PEAPAPPNNILF+QN+P++TTPM LQM F Q+P
Sbjct: 122 TPAYGGAYGTTPSLLQIPYPGGVKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFQQYP 181
Query: 197 GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLITYAKK 245
GFKEVRMVEAKPGIAFVEYGDEMQ+T AM LQ KI QQ +LITYAKK
Sbjct: 182 GFKEVRMVEAKPGIAFVEYGDEMQSTGAMHGLQGFKILQQNSMLITYAKK 231
>gi|449484269|ref|XP_004156835.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cucumis
sativus]
Length = 242
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/243 (75%), Positives = 217/243 (89%), Gaps = 4/243 (1%)
Query: 4 EVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWL 63
EV GNE+ PN TIYINNLNEK+K+++LK+SL+AVF QFG ILE+LAFKTLKHKGQAW+
Sbjct: 3 EVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWV 62
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
VF++V+SAT A+ +MQGFPFYDKPMRIQYAKTKSDIIAK+DG+FVPRE+RKRHEEKG+K+
Sbjct: 63 VFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKK 122
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
K+QHDANQAGMGLNPA+AGAYGAT SQ+PY GG ++PEAPAPPN+ILFVQN+PH+T
Sbjct: 123 KEQHDANQAGMGLNPAFAGAYGATAH-SQVPYSGGV--MVPEAPAPPNSILFVQNLPHET 179
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITY 242
TPM LQM F Q+PGFKEVRMVEAKPGIAFVEY DE+Q+TVAMQ+LQ K+ Q +LITY
Sbjct: 180 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITY 239
Query: 243 AKK 245
AKK
Sbjct: 240 AKK 242
>gi|225437410|ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Vitis vinifera]
Length = 245
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/241 (78%), Positives = 218/241 (90%), Gaps = 2/241 (0%)
Query: 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFK 66
N G EISPN TIYINNLNEK+K+++LK+SL AVF QFG I+E+LAFKTLKHKGQAW+VF+
Sbjct: 5 NTGGEISPNMTIYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAWVVFE 64
Query: 67 DVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKD 125
+V+SAT A+ +MQGFPFYDKPMRIQYAKTKSD+IAKADGTFVPRERR+RH+++ KR++
Sbjct: 65 EVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRRRHDDRAGRKRRE 124
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
QHDANQAG+G+NPAY GAYGA PPLSQIPY GGAKS +PEAPAPPNNILF+QN+PH+ TP
Sbjct: 125 QHDANQAGVGVNPAYGGAYGAAPPLSQIPYLGGAKSAVPEAPAPPNNILFIQNLPHEATP 184
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAK 244
M LQMFF Q+PGFKEVRMVEAKPGIAFVEYGDEMQ+TVAMQ LQ LKI QQ +LITYAK
Sbjct: 185 MMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLITYAK 244
Query: 245 K 245
K
Sbjct: 245 K 245
>gi|15226631|ref|NP_182280.1| spliceosomal protein U1A [Arabidopsis thaliana]
gi|75319458|sp|Q39244.1|RU1A_ARATH RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|1050430|emb|CAA90283.1| U1snRNP-specific protein [Arabidopsis thaliana]
gi|2529669|gb|AAC62852.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|15450591|gb|AAK96567.1| At2g47580/T30B22.12 [Arabidopsis thaliana]
gi|16649011|gb|AAL24357.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|20259986|gb|AAM13340.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|22655484|gb|AAM98334.1| At2g47580/T30B22.12 [Arabidopsis thaliana]
gi|330255767|gb|AEC10861.1| spliceosomal protein U1A [Arabidopsis thaliana]
Length = 250
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/250 (73%), Positives = 209/250 (83%), Gaps = 5/250 (2%)
Query: 1 MEPEVANQG--NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHK 58
ME + ANQG +E+SPN TIYINNLNEKVK+D+LK+SL+AVF QFG ILEILAFKT KHK
Sbjct: 1 MEMQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHK 60
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE 118
GQAW+VF + SA+ A+ KM FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKRHEE
Sbjct: 61 GQAWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEE 120
Query: 119 KGKKRK--DQH-DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
KG +K DQH D+ Q GM +N AY G YGA PPLSQ+PYPGG K +PEAPAPPNNILF
Sbjct: 121 KGGGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILF 180
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
VQN+PH+TTPM LQM F Q+ GFKEVRM+EAKPGIAFVE+ DEMQ+TVAMQ LQ KI Q
Sbjct: 181 VQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQQ 240
Query: 236 QQLLITYAKK 245
Q+LITYAKK
Sbjct: 241 NQMLITYAKK 250
>gi|297743906|emb|CBI36876.3| unnamed protein product [Vitis vinifera]
Length = 232
Score = 368 bits (945), Expect = e-99, Method: Compositional matrix adjust.
Identities = 182/231 (78%), Positives = 211/231 (91%), Gaps = 2/231 (0%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
TIYINNLNEK+K+++LK+SL AVF QFG I+E+LAFKTLKHKGQAW+VF++V+SAT A+
Sbjct: 2 TIYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAWVVFEEVSSATNALR 61
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKDQHDANQAGMG 135
+MQGFPFYDKPMRIQYAKTKSD+IAKADGTFVPRERR+RH+++ KR++QHDANQAG+G
Sbjct: 62 QMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRRRHDDRAGRKRREQHDANQAGVG 121
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQF 195
+NPAY GAYGA PPLSQIPY GGAKS +PEAPAPPNNILF+QN+PH+ TPM LQMFF Q+
Sbjct: 122 VNPAYGGAYGAAPPLSQIPYLGGAKSAVPEAPAPPNNILFIQNLPHEATPMMLQMFFCQY 181
Query: 196 PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
PGFKEVRMVEAKPGIAFVEYGDEMQ+TVAMQ LQ LKI QQ +LITYAKK
Sbjct: 182 PGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLITYAKK 232
>gi|356573171|ref|XP_003554737.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Glycine max]
Length = 241
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/236 (78%), Positives = 210/236 (88%), Gaps = 4/236 (1%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
EI NNTIYINNLNEK+KID+LK+SL+AVF QFG ILE+LAFKTLKHKGQAW+VF+D +S
Sbjct: 9 EIPQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASS 68
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ +MQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE+RKRH+EK KKRKDQHD+N
Sbjct: 69 ASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKAKKRKDQHDSN 128
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
AGMGLNPAYAGAYGA I YPGGAKS++PEAPAPPNNILF+QN+P+D+TPM LQM
Sbjct: 129 LAGMGLNPAYAGAYGAA---PAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDSTPMMLQM 185
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKEVRMVE KPGIAFVEYGDEMQ+TVAMQ+LQ KI Q +LITYAKK
Sbjct: 186 LFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYAKK 241
>gi|351722454|ref|NP_001235453.1| uncharacterized protein LOC100500002 [Glycine max]
gi|255628437|gb|ACU14563.1| unknown [Glycine max]
Length = 241
Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 186/241 (77%), Positives = 211/241 (87%), Gaps = 4/241 (1%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
N EI +NTIYINNLNEK+KID+LK+SL+AVF QFG ILE+LAFKTLKHKGQAW+VF
Sbjct: 4 VNATPEIPQSNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVF 63
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
+D +SA+ A+ +MQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE+RKRH++K KKRKD
Sbjct: 64 EDASSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKAKKRKD 123
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
QHDAN AGMGLNPAYAGAYGA I YPGGAKS++PEAPAPPNNILF+QN+P+D+TP
Sbjct: 124 QHDANLAGMGLNPAYAGAYGAA---PAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDSTP 180
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244
M LQM F Q+PGFKEVRMVE KPGIAFVEYGDEMQ+TVAMQ+LQ KI Q +LITYAK
Sbjct: 181 MMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQCFKITPQNPMLITYAK 240
Query: 245 K 245
K
Sbjct: 241 K 241
>gi|255647418|gb|ACU24174.1| unknown [Glycine max]
Length = 241
Score = 358 bits (920), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 185/236 (78%), Positives = 209/236 (88%), Gaps = 4/236 (1%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
EI NN IYINNLNEK+KID+LK+SL+AVF QFG ILE+LAFKTLKHKGQAW+VF+D +S
Sbjct: 9 EIPQNNAIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASS 68
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ +MQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE+RKRH+EK KKRKDQHD+N
Sbjct: 69 ASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKAKKRKDQHDSN 128
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
AGMGLNPAYAGAYGA I YPGGAKS++PEAPAPPNNILF+QN+P+D+TPM LQM
Sbjct: 129 LAGMGLNPAYAGAYGAA---PAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDSTPMMLQM 185
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKEVRMVE KPGIAFVEYGDEMQ+TVAMQ+LQ KI Q +LITYAKK
Sbjct: 186 LFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYAKK 241
>gi|297824861|ref|XP_002880313.1| hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp.
lyrata]
gi|297326152|gb|EFH56572.1| hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp.
lyrata]
Length = 249
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 180/249 (72%), Positives = 204/249 (81%), Gaps = 4/249 (1%)
Query: 1 MEPEVANQG--NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHK 58
ME + ANQG +E+SPN TIYINNLNEKVKID+LK+SL+AVF QFG ILEILAFKTLKHK
Sbjct: 1 MEMQEANQGGGSEVSPNQTIYINNLNEKVKIDELKKSLNAVFSQFGKILEILAFKTLKHK 60
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR--H 116
GQAW+VF + SA+ A+ KM FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR
Sbjct: 61 GQAWVVFDNADSASTAIAKMNDFPFYDKNMRIQYAKTKSDVVAKADGTFVPREKRKRHEE 120
Query: 117 EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFV 176
+ KK+ HD+ Q GM N AY G YGA PPLSQ+PYPGG K +PEAPAPPNNILFV
Sbjct: 121 KGGKKKKDHHHDSTQMGMATNSAYPGVYGAAPPLSQVPYPGGVKPNLPEAPAPPNNILFV 180
Query: 177 QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236
QN+PH+TTPM LQM F Q+ GFKEVRMVEAKPGIAFVE+ DEMQ+TVAMQ LQ KI Q
Sbjct: 181 QNLPHETTPMVLQMLFYQYQGFKEVRMVEAKPGIAFVEFADEMQSTVAMQGLQGFKIQQN 240
Query: 237 QLLITYAKK 245
Q+LITYAKK
Sbjct: 241 QMLITYAKK 249
>gi|449469074|ref|XP_004152246.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Cucumis sativus]
Length = 248
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 176/249 (70%), Positives = 209/249 (83%), Gaps = 10/249 (4%)
Query: 4 EVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWL 63
EV GNE+ PN TIYINNLNEK+K+++LK+SL+AVF QFG ILE+LAFKTLKHKGQAW+
Sbjct: 3 EVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWV 62
Query: 64 VFKDVASATAAVEKMQGFPFYD------KPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
VF++V+SAT A+ F F + K RIQYAKTKSDIIAK+DG+FVPRE+RKRHE
Sbjct: 63 VFEEVSSATNALFFFFFFQFLEFXFLFAKFRRIQYAKTKSDIIAKSDGSFVPREKRKRHE 122
Query: 118 EKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQ 177
EKG+K+K+QHDANQAGMGLNPA+AGAYGAT SQ+PY GG ++PEAPAPPN+ILFVQ
Sbjct: 123 EKGRKKKEQHDANQAGMGLNPAFAGAYGATAH-SQVPYSGGV--MVPEAPAPPNSILFVQ 179
Query: 178 NVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQ 236
N+PH+TTPM LQM F Q+PGFKEVRMVEAKPGIAFVEY DE+Q+TVAMQ+LQ K+ Q
Sbjct: 180 NLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQN 239
Query: 237 QLLITYAKK 245
+LITYAKK
Sbjct: 240 SMLITYAKK 248
>gi|1050840|emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]
Length = 253
Score = 345 bits (886), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 184/244 (75%), Positives = 217/244 (88%), Gaps = 1/244 (0%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
P A G E PN TIYINNLNEK+K+++LK+S+HAVF QFG ILE+LAFKTLKHKGQAW
Sbjct: 10 PNPAPSGGETPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAW 69
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
+VF++V+SA+ A+ +MQGFPFYDKPMRIQYAKTKSD++AKADGTFVPRE+RKRHE+KG+K
Sbjct: 70 VVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRK 129
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
+KDQ D+NQAGMGLNPAYAGAYGA PP SQIPY GGAK+ +PEAPAPPN+ILFVQN+PH
Sbjct: 130 KKDQQDSNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQ 189
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLIT 241
+TPM LQM F Q+PGFKEVRM+EAKPGIAF+EYGDEMQ+TVAMQ+LQ KI + +LIT
Sbjct: 190 STPMMLQMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLIT 249
Query: 242 YAKK 245
YAKK
Sbjct: 250 YAKK 253
>gi|242086969|ref|XP_002439317.1| hypothetical protein SORBIDRAFT_09g004270 [Sorghum bicolor]
gi|241944602|gb|EES17747.1| hypothetical protein SORBIDRAFT_09g004270 [Sorghum bicolor]
Length = 259
Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/240 (71%), Positives = 202/240 (84%), Gaps = 7/240 (2%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
N + PN TIYINNLNEK+K+++LK+SL AVF QFG IL++LAFKTLKHKGQAW+VF+DVA
Sbjct: 23 NGVQPNVTIYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 82
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE---EKGKKRKDQ 126
SAT A+++MQGFPFYDK MRIQYAKTKSDI+AKADGTFVPRERRKR + EK +KR+
Sbjct: 83 SATEALKRMQGFPFYDKTMRIQYAKTKSDIVAKADGTFVPRERRKRVDEKPEKKQKREHH 142
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
HDA+Q GMG+N AY G YGA P L+QIP GG + ++PE PNNILFVQN+PH+TTPM
Sbjct: 143 HDASQIGMGVN-AYPGVYGA-PQLTQIPIAGGQRVIMPEIIV-PNNILFVQNLPHETTPM 199
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLITYAKK 245
LQM F Q+PGFKEVRMVEAKPGIAFVEYGDE QAT AM +LQS KI ++ Q++ITYAKK
Sbjct: 200 MLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNNLQSFKITKENQMVITYAKK 259
>gi|224034387|gb|ACN36269.1| unknown [Zea mays]
gi|413944623|gb|AFW77272.1| hypothetical protein ZEAMMB73_456532 [Zea mays]
Length = 254
Score = 338 bits (868), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 171/244 (70%), Positives = 202/244 (82%), Gaps = 9/244 (3%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
+ N I PN TIYINNLNEK+K+++LK+SL AVF QFG IL++LAFKTLKHKGQAW+VF+D
Sbjct: 14 EANGIPPNVTIYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFED 73
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG---KKRK 124
VASAT A+++MQGFPFYDK MRIQYAKTKSDIIAKADGTFVPRERRKR +EK +KR+
Sbjct: 74 VASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKRE 133
Query: 125 DQHD--ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
HD A+Q GMG+ AY G YGA P L+QIP GG + ++PE PNNILFVQN+PH+
Sbjct: 134 HHHDAGASQIGMGVT-AYPGVYGA-PQLTQIPIAGGQRVMMPEIIV-PNNILFVQNLPHE 190
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLIT 241
TTPM LQM F Q+PGFKEVRM+EAKPGIAFVEYGDE QAT AM +LQS KI ++ Q++IT
Sbjct: 191 TTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVIT 250
Query: 242 YAKK 245
YAKK
Sbjct: 251 YAKK 254
>gi|226498478|ref|NP_001144860.1| uncharacterized protein LOC100277950 [Zea mays]
gi|195648000|gb|ACG43468.1| hypothetical protein [Zea mays]
Length = 254
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/244 (69%), Positives = 201/244 (82%), Gaps = 9/244 (3%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
+ N I PN TIYINNLNEK+K+++LK+SL AVF QFG IL++LAFKTLKHKGQAW+VF+D
Sbjct: 14 EANGIPPNVTIYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFED 73
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG---KKRK 124
VASAT A+++MQGFPFYDK MRIQYAKTKSDIIAKADGTFVPRERRKR +EK +KR+
Sbjct: 74 VASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKRE 133
Query: 125 DQHD--ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
HD A+Q GMG+ AY G YGA P L+QIP GG + ++PE PNNILFVQN+PH+
Sbjct: 134 HHHDAGASQIGMGVT-AYPGVYGA-PQLTQIPIAGGQRVMMPEIIV-PNNILFVQNLPHE 190
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLIT 241
TTPM LQM F Q+PGFKEVRM+EAKPGIAFVEYGDE Q T AM +LQS KI ++ Q++IT
Sbjct: 191 TTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQVTAAMNNLQSFKITKENQMVIT 250
Query: 242 YAKK 245
YAKK
Sbjct: 251 YAKK 254
>gi|357134589|ref|XP_003568899.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Brachypodium
distachyon]
Length = 251
Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 167/236 (70%), Positives = 197/236 (83%), Gaps = 7/236 (2%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN TIYINNLNEK K+++LK+SL+AVF QFG ILE+LAFKTLKHKGQAW+VF+DVASAT
Sbjct: 19 PNVTIYINNLNEKTKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVASATE 78
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE---EKGKKRKDQHDAN 130
A+++MQ FPFYDKPM+IQYAKTKSD++AKADGTFVPRERRKR + EK +KR+ HD +
Sbjct: 79 ALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPRERRKRTDEKPEKKQKREQHHDVS 138
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q +G+N AY GAYGA PPLSQ+P+ GG K ++PE PNNILFVQN+PHDTTPM LQM
Sbjct: 139 QGTLGMN-AYPGAYGA-PPLSQLPFGGGPKVMMPEIIV-PNNILFVQNLPHDTTPMMLQM 195
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL-LITYAKK 245
F Q+ GFKE RM+EAKPGIAFVEYGDE QAT AM +LQ+ KI + L LITYAKK
Sbjct: 196 LFCQYQGFKEARMIEAKPGIAFVEYGDEGQATAAMSALQNFKISKDNLMLITYAKK 251
>gi|326507414|dbj|BAK03100.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528465|dbj|BAJ93414.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 249
Score = 335 bits (860), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 165/239 (69%), Positives = 198/239 (82%), Gaps = 6/239 (2%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
N + PN TIYINNLNEK+K+D LK+SL+AVF QFG I+E+LAFKTLKHKGQAW+VF+DVA
Sbjct: 14 NGVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVA 73
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE---EKGKKRKDQ 126
SAT A+++MQ FPFYDKPM+IQYAKTKSD++AKADGTFVPRE+RKR++ EK +KR+
Sbjct: 74 SATEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQH 133
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
HD NQAG+G++ AY GAYGA PPLSQ+P+ G K ++PE PNNILFVQ +PHD T +
Sbjct: 134 HDVNQAGVGMH-AYPGAYGA-PPLSQLPFGAGPKVMMPEIIV-PNNILFVQELPHDATAL 190
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
LQMFF Q+PGFKEVRM+EAKPGIAFVEYGDE QAT AM LQ KI + + ITYAKK
Sbjct: 191 MLQMFFCQYPGFKEVRMIEAKPGIAFVEYGDEGQATAAMNLLQGFKIKENPMRITYAKK 249
>gi|115462171|ref|NP_001054685.1| Os05g0154800 [Oryza sativa Japonica Group]
gi|122169518|sp|Q0DKM4.1|RU1A_ORYSJ RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|384950745|sp|A2Y0J7.1|RU1A_ORYSI RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|113578236|dbj|BAF16599.1| Os05g0154800 [Oryza sativa Japonica Group]
gi|125550898|gb|EAY96607.1| hypothetical protein OsI_18512 [Oryza sativa Indica Group]
gi|222630249|gb|EEE62381.1| hypothetical protein OsJ_17170 [Oryza sativa Japonica Group]
Length = 253
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/244 (69%), Positives = 200/244 (81%), Gaps = 7/244 (2%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A + N PN TIYINNLNEK+K+++LK+SL AVF QFG IL++LAFKTLKHKGQAW+VF
Sbjct: 13 APEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVF 72
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE---EKGKK 122
+DVASAT A++ MQ FPF++KPMRIQYAKTKSDIIAKADGTFVPRERRKR++ EK +K
Sbjct: 73 EDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQK 132
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
R+ HD +Q G+G+N AY G YGA PPLSQ+P+ G K ++PE PNNILFVQN+PH+
Sbjct: 133 REQHHDVSQVGLGVN-AYPGVYGA-PPLSQLPFAGAQKVMMPEIIV-PNNILFVQNLPHE 189
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLIT 241
TTPM LQM F Q+PGFKEVRMVEAKPGIAFVEYGDE QAT AM LQ KI + Q+LI+
Sbjct: 190 TTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLIS 249
Query: 242 YAKK 245
YAKK
Sbjct: 250 YAKK 253
>gi|294461275|gb|ADE76200.1| unknown [Picea sitchensis]
gi|294464400|gb|ADE77712.1| unknown [Picea sitchensis]
Length = 241
Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 157/241 (65%), Positives = 193/241 (80%), Gaps = 4/241 (1%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
Q ++I PN TIYINNLNEK K+D+LK+SL+AVF QFG I++++A KTLKH+GQAW+VF +
Sbjct: 2 QSSDIPPNMTIYINNLNEKTKLDELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFDE 61
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG--KKRKD 125
V++AT A+ +MQGFPFYDKPMRIQYAKTKSD IAKADGT+VPRE+R+R +E+ K+R+
Sbjct: 62 VSAATNALRQMQGFPFYDKPMRIQYAKTKSDAIAKADGTYVPREKRRRQDERAERKRREQ 121
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
H+ Q G+ N AY YGA SQ+ +P S +PEAPAPPNNILFVQN+PH+TT
Sbjct: 122 HHETQQPGVIPNAAYPSGYGAPILGSQMQFPSSRPS-LPEAPAPPNNILFVQNLPHETTS 180
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244
M LQM F Q+ GFKEVRM+EAKPGIAFVEY DEMQ+TVAMQ+LQ KI Q +LITYAK
Sbjct: 181 MMLQMLFCQYHGFKEVRMIEAKPGIAFVEYADEMQSTVAMQALQGFKITPQNPMLITYAK 240
Query: 245 K 245
K
Sbjct: 241 K 241
>gi|116781538|gb|ABK22144.1| unknown [Picea sitchensis]
Length = 235
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/237 (61%), Positives = 182/237 (76%), Gaps = 8/237 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIY+NNLNE+VK ++LK+SL+A+F QFG I +I+A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTIYVNNLNERVKKEELKKSLYALFSQFGRIADIVALKTTKLRGQAWVVFDEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG-KKRKDQHDA 129
A+ A+ +MQGFPFYDKPMRIQY K+KSD IAK DGT+VPRE+RK+ EEK K+RK+QH+
Sbjct: 65 ASNALRQMQGFPFYDKPMRIQYGKSKSDAIAKVDGTYVPREKRKKQEEKAEKRRKEQHET 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+QAG G +Y A + Q K E PAPPNNILF+QN+PH+TT M LQ
Sbjct: 125 HQAGNGPATSYGAAAASQSQFQQ------GKPSSQEPPAPPNNILFIQNLPHETTTMMLQ 178
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F Q+PGFKEVRM+EAKPGIAFVEYGDEMQA+VAMQ+LQ KI Q +LITYAKK
Sbjct: 179 MLFQQYPGFKEVRMIEAKPGIAFVEYGDEMQASVAMQALQGFKITPQNPMLITYAKK 235
>gi|346464627|gb|AEO32158.1| hypothetical protein [Amblyomma maculatum]
Length = 199
Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 133/187 (71%), Positives = 164/187 (87%), Gaps = 3/187 (1%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ PN T+YINNLNEK+ +++LK+SL AVF Q+G ILE+LAFKTLKHKGQAW+VF+DV+ A
Sbjct: 13 VPPNMTLYINNLNEKINLNELKKSLRAVFSQYGNILEVLAFKTLKHKGQAWVVFEDVSKA 72
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG-KKRKDQHDAN 130
+ A+++MQGFPFYDKPMRIQYAKTKSDIIAK+DGTFVPRERRKRH++K +KR++QH
Sbjct: 73 SEALKQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPRERRKRHDDKAERKRREQHHDA 132
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q+G GLN YAGAYG PPLSQ+P+ G AKS++PEAPAPPNNILFVQN+PH++TPM LQM
Sbjct: 133 QSGAGLN--YAGAYGVAPPLSQLPFTGXAKSMLPEAPAPPNNILFVQNLPHESTPMMLQM 190
Query: 191 FFSQFPG 197
F Q+PG
Sbjct: 191 LFCQYPG 197
>gi|302769730|ref|XP_002968284.1| hypothetical protein SELMODRAFT_409510 [Selaginella moellendorffii]
gi|302788648|ref|XP_002976093.1| hypothetical protein SELMODRAFT_175284 [Selaginella moellendorffii]
gi|300156369|gb|EFJ22998.1| hypothetical protein SELMODRAFT_175284 [Selaginella moellendorffii]
gi|300163928|gb|EFJ30538.1| hypothetical protein SELMODRAFT_409510 [Selaginella moellendorffii]
Length = 235
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/236 (53%), Positives = 165/236 (69%), Gaps = 23/236 (9%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+E+ PN TIYINNLNEK+K D+L +SL AVF QFG IL+I+A K+LK KGQAW+VF+DV
Sbjct: 23 SEVPPNQTIYINNLNEKIKKDELVKSLRAVFSQFGNILDIVACKSLKLKGQAWVVFEDVT 82
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
+AT A+ +MQ FPFYDK +RIQYAKTKSD +AK DGTF+P+E+RK+ +EK +KRK +H
Sbjct: 83 AATNALRQMQEFPFYDKALRIQYAKTKSDAVAKLDGTFIPKEKRKKIDEKAEKRKREHHE 142
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ + Y ++ +PE A PNNILFVQ +PHDT+ LQ
Sbjct: 143 SHS----------------------YHYPMRTSVPEI-ALPNNILFVQKLPHDTSSAQLQ 179
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
M FS PGFKEVRMV+AKPGIAFVEY + QA+VA + + ++ + + ITYAK+
Sbjct: 180 MLFSSIPGFKEVRMVDAKPGIAFVEYAEVDQASVAKSTFHAFRVNESPMHITYAKR 235
>gi|15227729|ref|NP_180585.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
gi|75318049|sp|O22922.1|RU2B1_ARATH RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|2347192|gb|AAC16931.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|27765024|gb|AAO23633.1| At2g30260 [Arabidopsis thaliana]
gi|110743428|dbj|BAE99600.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|330253269|gb|AEC08363.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
Length = 232
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 171/237 (72%), Gaps = 11/237 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI NLNE++K ++LK+SL+ +F QFG IL+++A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDA 129
A AV +MQ FPFYDKPMR+QYAK KSD +AKA+GTFVP++++++ EEK +KR+D
Sbjct: 65 AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRP 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
N A + G P Q P G +++ PPNNILF+QN+PH+TT M LQ
Sbjct: 125 NTANGPSANGPSANNGVPAPSFQ---PSGQETM------PPNNILFIQNLPHETTSMMLQ 175
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+ F Q+PGFKE+RM++AKPGIAFVEY D++QA++AMQ LQ KI Q ++I++AKK
Sbjct: 176 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gi|225434417|ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Vitis vinifera]
gi|297745807|emb|CBI15863.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/238 (56%), Positives = 177/238 (74%), Gaps = 11/238 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI NLNEKVK ++LK+SL+ +F Q+G IL+++A KT K +GQAW+VF +V +
Sbjct: 5 DIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMR+QYAKTKSD +AKADGTFVPRE++K+ EEK +K++ +A
Sbjct: 65 ASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRAEEAQ 124
Query: 131 QAG--MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
Q+G G N G G TPP Q G + PE A PNNILF+QN+PH TT M L
Sbjct: 125 QSGNANGRNAETNG--GPTPPFRQ----GNQGAREPE--AAPNNILFIQNLPHQTTSMML 176
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
Q+ F Q+PGF+EVRM+EAKPGIAFVE+ D++Q+++AM++LQ KI Q + I YAKK
Sbjct: 177 QVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234
>gi|169589|gb|AAA33847.1| spliceosomal protein [Solanum tuberosum]
Length = 231
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/236 (53%), Positives = 171/236 (72%), Gaps = 11/236 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLNEKVK ++LK+SL+ +F Q+G I++I+A KT K +GQ+W+VF +V +
Sbjct: 6 DIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFSEVTA 65
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMRIQYAK+KSD IAKA+GT+ +++K+ +EK +KRK +
Sbjct: 66 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKAEGTY---DKKKKQDEKVEKRKRTEETP 122
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q G P + G S+ P A+ V A PNNILF+QN+PH+TT M L++
Sbjct: 123 QTGAANGPR-TDSNGGPAAASRQGKP-SAQDV-----AEPNNILFIQNLPHETTSMMLEV 175
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGF+EVRM+EAKPGIAFVE+ D++Q++VAMQ+LQ KI Q + ITYAKK
Sbjct: 176 LFKQYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 231
>gi|359806644|ref|NP_001241278.1| uncharacterized protein LOC100805822 [Glycine max]
gi|255647802|gb|ACU24361.1| unknown [Glycine max]
Length = 232
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/236 (53%), Positives = 173/236 (73%), Gaps = 9/236 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI N+NEKVK D+LK+SL+ +F Q+G IL+++A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQTIYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMRIQYAKTKSD IAK +GT+VPRE++K+ EEK ++++ +A
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRAEEAQ 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q+G+ A G T Q P GA+ A PNNILF++N+PH+TT L+M
Sbjct: 125 QSGVANGTHSASNGGPTASFRQGP---GAQET-----AAPNNILFIENLPHETTGRMLEM 176
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKEVR++EAKPGIAFV++ DE+Q+++AMQ+L KI Q ++IT+AKK
Sbjct: 177 LFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
>gi|297826425|ref|XP_002881095.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
gi|297326934|gb|EFH57354.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
Length = 232
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 119/236 (50%), Positives = 171/236 (72%), Gaps = 9/236 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI NLNEK+K ++LK+SL+ +F QFG IL+++A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQSIYIQNLNEKIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMR+QYAK KSD +AKA+GTFVP++++++ EEK ++++++
Sbjct: 65 ASNAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREESQRP 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
G + A P S +P + + PPNNILF+QN+PH+TT M LQ+
Sbjct: 125 NTANGPSANGPSANNGVPAPS---FPPSGQEAM-----PPNNILFIQNLPHETTSMMLQL 176
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKE+RM++AKPGIAFVEY D++QA++AMQ LQ KI Q ++I++AKK
Sbjct: 177 LFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gi|351726226|ref|NP_001237887.1| uncharacterized protein LOC100499914 [Glycine max]
gi|255627621|gb|ACU14155.1| unknown [Glycine max]
Length = 232
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 125/236 (52%), Positives = 171/236 (72%), Gaps = 9/236 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLNEKVK D+LK+SL+ +F Q+G IL+++A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQTIYIKNLNEKVKKDELKRSLYCLFPQYGRILDVIALKTPKLRGQAWVCFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMRI YAKTKSD IAK +G+FVPRE++K+ EEK ++++ +A
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIHYAKTKSDCIAKEEGSFVPREKKKKQEEKAERKRRVEEAQ 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q+G+ A G T Q P GA+ A PNNILF++N+PH+TT L+M
Sbjct: 125 QSGVANGTHSASNGGPTASFRQGP---GAQEA-----AAPNNILFIENLPHETTGRMLEM 176
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKEV ++EAKPGIAFV++ DE+Q+++AMQ+L KI Q ++IT+AKK
Sbjct: 177 LFEQYPGFKEVCLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
>gi|449439191|ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
gi|449520549|ref|XP_004167296.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
Length = 231
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/241 (51%), Positives = 173/241 (71%), Gaps = 20/241 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLNEKVK ++LK+SL+A+F Q+G IL+++A KT + +GQAW+ F +V +
Sbjct: 5 DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFY+KPMRIQYAKTKSD IAKADG+FVPRE++K+ EEK +K++ + +
Sbjct: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETH 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-----PAPPNNILFVQNVPHDTTP 185
Q+ M P GG+ + A A PNNILF++N+PH+T+
Sbjct: 125 QSAM--------------PNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSS 170
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244
M LQ+ F Q+PGF+EVRM+EAKPGIAFVE+ D++Q+++AMQ+LQ KI Q + I++AK
Sbjct: 171 MMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAK 230
Query: 245 K 245
K
Sbjct: 231 K 231
>gi|224146679|ref|XP_002326095.1| predicted protein [Populus trichocarpa]
gi|222862970|gb|EEF00477.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/236 (52%), Positives = 170/236 (72%), Gaps = 8/236 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLNEKVK ++LK+SL+ +F Q+G IL+++A KT + +GQAW+VF +V +
Sbjct: 5 DIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTARLRGQAWVVFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQGFPFYDKPMRIQYAKTKSD IA+A+G + P ++K+ +E+ +RK + +
Sbjct: 65 ASNAVRQMQGFPFYDKPMRIQYAKTKSDCIAEAEGVYDPNAKKKKKQEEKAERKKRAEEA 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q N A + G Q G +S + PPNNILF+QN+PH+TT M LQ+
Sbjct: 125 QQSAPANGKPAESNGGPTSFRQ-----GNQSA--QETVPPNNILFIQNLPHETTSMMLQV 177
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGF+EVRM+EAKPGIAFVE+ D++Q+++AMQ+LQ KI Q + ITYAKK
Sbjct: 178 LFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITYAKK 233
>gi|255553401|ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
gi|223543140|gb|EEF44674.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
Length = 233
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 168/236 (71%), Gaps = 8/236 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLNEKVK ++LK+SL+ +F Q+G IL+++A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVMA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQGFPFYDKPMRIQYAKTKSD + +A+G + P ++K+ +E+ +RK + +
Sbjct: 65 ASNAVRQMQGFPFYDKPMRIQYAKTKSDCLVEAEGNYDPNAKKKKKQEEKAERKRRAEEA 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q N T P Q G + + APPNNILF+QN+PH+TT M LQ+
Sbjct: 125 QQSATANGTSTVNNRGTAPFRQ-----GNRG--EQEAAPPNNILFIQNLPHETTSMMLQV 177
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGF+EVRM+EAKPGIAFVE+ D++Q+++AMQ+LQS KI Q + ITYAKK
Sbjct: 178 LFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQSFKITPQNPMAITYAKK 233
>gi|21593001|gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
Length = 232
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 172/237 (72%), Gaps = 11/237 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN++IYI NLNE++K ++LK+SL+ +F QFG IL+++A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNHSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A AV +MQ FP YDKPMR+QYAK KSD +AKA+GTFVP++++++ EEK ++++++
Sbjct: 65 AGHAVRQMQNFPXYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREESQRP 124
Query: 131 QAGMGLNPAYAGAYGATP-PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
G + A P P Q P G +++ PPNNILF+QN+PH+TT M LQ
Sbjct: 125 NTANGPSANGPSANNGVPAPSFQ---PSGQETM------PPNNILFIQNLPHETTSMMLQ 175
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+ F Q+PGFKE+RM++AKPGIAFVEY D++QA++AMQ LQ KI Q ++I++AKK
Sbjct: 176 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gi|168028479|ref|XP_001766755.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681964|gb|EDQ68386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 235
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/233 (60%), Positives = 180/233 (77%), Gaps = 6/233 (2%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN TIYINNLNEKVK ++LK+SL+AVF QFG I++I+A KTLK +GQAW+VF DV +AT+
Sbjct: 8 PNQTIYINNLNEKVKKEELKKSLYAVFSQFGKIMDIVACKTLKLRGQAWVVFDDVTAATS 67
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ +MQGFPFYDKPMRIQYAKT SD I+KA+GT+VP+E+RK+ EEK ++++ +
Sbjct: 68 ALRQMQGFPFYDKPMRIQYAKTTSDAISKANGTYVPKEKRKKQEEKAERKRREQQVEAPT 127
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
AY YG P Q P + V+PEAPAPPNNILFVQN+PH+ T +A+Q+ F
Sbjct: 128 APPPAAYPPPYGVPPHQYQPP-----RPVVPEAPAPPNNILFVQNLPHEATSLAIQVLFQ 182
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
QFPGFKEVRM+EAKPGIAFVE+GDE+QATVA+Q L + KI Q + ++YAKK
Sbjct: 183 QFPGFKEVRMIEAKPGIAFVEFGDELQATVALQGLHNFKITPNQAMQVSYAKK 235
>gi|30679897|ref|NP_172177.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189938|gb|AEE28059.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 228
Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 170/236 (72%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI ++NEK+K ++LK+SL+ +F QFG +L+++A KT K +GQAW+VF +V +
Sbjct: 5 DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMRIQYAK+KSD + KA+G+FVP+E++ + EEK ++++ +
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q M P A PP Q P G ++ PPNNILF+ N+P +T M LQ+
Sbjct: 125 QPSM---PNGATTQNGMPPPFQ---PSGQDTM------PPNNILFIHNLPIETNSMMLQL 172
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKE+RM+EAKPGIAFVEY D++Q+++AMQ+LQ KI Q +++++AKK
Sbjct: 173 LFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228
>gi|388501866|gb|AFK38999.1| unknown [Medicago truncatula]
Length = 234
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 172/236 (72%), Gaps = 7/236 (2%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLNEK+K D+LK+SL+ +F Q+G IL+I+A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFY+KPMRIQYAKTKSD IAK +G+FVPRE++K+ EEK +K+K ++
Sbjct: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q+ + + + G + S P G ++ A PNNILF++N+P++TT L+M
Sbjct: 125 QSAVPNGGTHGASNGGSTQASFRPGSGAQEA------AAPNNILFIENLPYETTGRMLEM 178
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKEVR++EAKPGIAFV++ D+ Q+++AMQ+LQ KI Q ++I +AKK
Sbjct: 179 LFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 234
>gi|357491327|ref|XP_003615951.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355517286|gb|AES98909.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|388501104|gb|AFK38618.1| unknown [Medicago truncatula]
Length = 233
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 174/236 (73%), Gaps = 8/236 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLNEK+K D+LK+SL+ +F Q+G IL+I+A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFY+KPMRIQYAKTKSD IAK +G+FVPRE++K+ EEK +K+K ++
Sbjct: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q+ + G +GA+ S + G+ + + A PNNILF++N+P++TT L+M
Sbjct: 125 QSAV----PNGGTHGASNGGSTASFRPGSGA---QEAAAPNNILFIENLPYETTGRMLEM 177
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKEVR++EAKPGIAFV++ D+ Q+++AMQ+LQ KI Q ++I +AKK
Sbjct: 178 LFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
>gi|293333676|ref|NP_001169386.1| uncharacterized protein LOC100383254 [Zea mays]
gi|224029017|gb|ACN33584.1| unknown [Zea mays]
gi|414866361|tpg|DAA44918.1| TPA: hypothetical protein ZEAMMB73_448604 [Zea mays]
Length = 233
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/237 (53%), Positives = 170/237 (71%), Gaps = 10/237 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I P+ TIY+NNLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+ F ++ +
Sbjct: 5 DIPPSQTIYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVAFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDA 129
AT A +Q F FY K MR+QYAKTKSD IAK DGT+ P+E+RK+ EEK +K++ +A
Sbjct: 65 ATNAFRGLQDFDFYSKKMRVQYAKTKSDCIAKEDGTYAPKEKRKKQEEKAAEKKRRTEEA 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
QA GLN A A + G S++ G A E PAPPNNILF+QN+P TT M LQ
Sbjct: 125 QQA--GLNAAAAQSNGTGYQASRL---GKASQ---EPPAPPNNILFIQNLPDQTTSMMLQ 176
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+ F Q+PGF+EVRM+EAKPGIAFVE+ D+ Q+ VAMQ+LQ KI + + I+YAKK
Sbjct: 177 ILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAKK 233
>gi|242036017|ref|XP_002465403.1| hypothetical protein SORBIDRAFT_01g038060 [Sorghum bicolor]
gi|241919257|gb|EER92401.1| hypothetical protein SORBIDRAFT_01g038060 [Sorghum bicolor]
Length = 233
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/237 (53%), Positives = 167/237 (70%), Gaps = 10/237 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIY+NNLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTIYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDA 129
AT A +Q F FY K MR+QYAKTKSD IAK DGT+ P+E+RK+ EEK +K++ +A
Sbjct: 65 ATNAFRGLQDFDFYGKKMRVQYAKTKSDCIAKEDGTYAPKEKRKKQEEKAAEKKRRAEEA 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
QAG + A + G Q G V E PAPPNNILF+QN+P TT M LQ
Sbjct: 125 QQAGPNASAAQSNGTG-----YQASRLG---KVSQEPPAPPNNILFIQNLPDQTTSMMLQ 176
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+ F Q+PGF+EVRM+EAKPGIAFVE+ D+ Q+ VAMQ+LQ KI + + I+YAKK
Sbjct: 177 ILFQQYPGFREVRMIEAKPGIAFVEFEDDSQSMVAMQALQGFKITPENPMAISYAKK 233
>gi|226531516|ref|NP_001149883.1| spliceosomal protein [Zea mays]
gi|194696844|gb|ACF82506.1| unknown [Zea mays]
gi|195635261|gb|ACG37099.1| spliceosomal protein [Zea mays]
gi|195659375|gb|ACG49155.1| spliceosomal protein [Zea mays]
gi|413956009|gb|AFW88658.1| Spliceosomal protein [Zea mays]
Length = 233
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/237 (54%), Positives = 170/237 (71%), Gaps = 10/237 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIY+NNLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTIYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDA 129
AT A +Q F FY K MR+QYAKTKSD IAK DGT+ P+E+RK+ EEK +K++ +A
Sbjct: 65 ATNAFRGLQDFDFYGKKMRVQYAKTKSDCIAKEDGTYAPKEKRKKQEEKAAEKKRRAEEA 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
QAG N A A + G S++ G A E PAPPNNILF+QN+P TT M LQ
Sbjct: 125 QQAGP--NAAAAQSNGTGYQASRL---GKASQ---EPPAPPNNILFIQNLPDQTTSMMLQ 176
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+ F Q+PGF+EVRM+EAKPGIAFVE+ D+ Q+ VAMQ+LQ KI + + I+YAKK
Sbjct: 177 ILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAKK 233
>gi|30679892|ref|NP_850936.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75329133|sp|Q8H1S6.1|RU2B2_ARATH RecName: Full=U2 small nuclear ribonucleoprotein B'' 2; Short=U2
snRNP B'' 2
gi|23296313|gb|AAN13038.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
gi|332189937|gb|AEE28058.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 229
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 169/236 (71%), Gaps = 12/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI ++NEK+K ++LK+SL+ +F QFG +L+++A KT K +GQAW+VF +V +
Sbjct: 5 DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMRIQYAK+KSD + KA+G+FVP+E++ + EEK ++++ +
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q M N A PP P G ++ PPNNILF+ N+P +T M LQ+
Sbjct: 125 QPSMP-NGATTQNGMPVPPFQ----PSGQDTM------PPNNILFIHNLPIETNSMMLQL 173
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKE+RM+EAKPGIAFVEY D++Q+++AMQ+LQ KI Q +++++AKK
Sbjct: 174 LFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>gi|19347861|gb|AAL85989.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
Length = 228
Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 170/236 (72%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI +++EK+K ++LK+SL+ +F QFG +L+++A KT K +GQAW+VF +V +
Sbjct: 5 DIPPNQSIYIKHISEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMRIQYAK+KSD + KA+G+FVP+E++ + EEK ++++ +
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q M P A PP Q P G ++ PPNNILF+ N+P +T M LQ+
Sbjct: 125 QPSM---PNGATTQNGMPPPFQ---PSGQDTM------PPNNILFIHNLPIETNSMMLQL 172
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKE+RM+EAKPGIAFVEY D++Q+++AMQ+LQ KI + +++++AKK
Sbjct: 173 LFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPRNPMVVSFAKK 228
>gi|302820252|ref|XP_002991794.1| hypothetical protein SELMODRAFT_236385 [Selaginella moellendorffii]
gi|300140475|gb|EFJ07198.1| hypothetical protein SELMODRAFT_236385 [Selaginella moellendorffii]
Length = 228
Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 168/239 (70%), Gaps = 18/239 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLN KVK ++K++LHA+F +G IL+++ KT K +GQAW+VF ++ +
Sbjct: 3 DILPNETIYIKNLNSKVKKQEMKRALHALFSAYGRILDVVVCKTPKLRGQAWVVFNEIPA 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKG--KKRKDQH 127
AT+A+ M+ F +D+PM IQYAK+KSD II+ D ++ P+E+R++ E+KG KKRKDQ
Sbjct: 63 ATSALRHMKEFQLFDRPMVIQYAKSKSDAIISLTDDSYAPKEKRRKTEDKGVDKKRKDQE 122
Query: 128 DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
QA G PA++ YGA PP + PG + PN+ILF+QN+P +TT
Sbjct: 123 QP-QAN-GATPAHSHVYGAAPPPVK---PGNQE---------PNSILFIQNLPDETTGPM 168
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
L+M F+++PG K+VRMV+ +PGIAFVEY DE QATVA+++LQS KI ++I+YAKK
Sbjct: 169 LEMLFTRYPGLKDVRMVDGRPGIAFVEYSDEGQATVALEALQSFKITANHAMVISYAKK 227
>gi|8954049|gb|AAF82223.1|AC067971_31 Strong similarity to a small nuclear ribonucleoprotein U2B'' -
potato from Solanum tuberosum gb|M72892. It contains an
RNA recognition motif PF|00076. ESTs gb|AA041158 and
gb|AI992475 come from this gene [Arabidopsis thaliana]
Length = 247
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 171/252 (67%), Gaps = 26/252 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI ++NEK+K ++LK+SL+ +F QFG +L+++A KT K +GQAW+VF +V +
Sbjct: 5 DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP---------RERRKRHEEKGK 121
A+ AV +MQ FPFYDKPMRIQYAK+KSD + KA+G+FVP + RKRH E+ +
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124
Query: 122 KRKDQHDA-NQAGMGLNPAYAGA------YGATPPLSQIPYPGGAKSVIPEAPAPPNNIL 174
+ + A Q GM + + + Y T P Q P G ++ PPNNIL
Sbjct: 125 QPSMPNGATTQNGMPVAISLSRIIPTIQYYLLTDPPFQ---PSGQDTM------PPNNIL 175
Query: 175 FVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
F+ N+P +T M LQ+ F Q+PGFKE+RM+EAKPGIAFVEY D++Q+++AMQ+LQ KI
Sbjct: 176 FIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKIT 235
Query: 235 -QQQLLITYAKK 245
Q +++++AKK
Sbjct: 236 PQNPMVVSFAKK 247
>gi|332855731|ref|XP_003316404.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Pan
troglodytes]
Length = 227
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 161/243 (66%), Gaps = 28/243 (11%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+ RKR + K K ++
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERD-RKREKRKPKSQE------ 117
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-------PPNNILFVQNVPHDT 183
PA AY +P G V+ ++P PPN+ILF+ N+P +T
Sbjct: 118 ------TPATKKAYYGSP-------TGLRALVLTDSPTPPQLSENPPNHILFLTNLPEET 164
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITY 242
+ L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++
Sbjct: 165 NELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 224
Query: 243 AKK 245
AKK
Sbjct: 225 AKK 227
>gi|426388779|ref|XP_004060810.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Gorilla
gorilla gorilla]
Length = 229
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 162/243 (66%), Gaps = 26/243 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ EK K + + A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR---EKRKPKSQETPAT 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-------PPNNILFVQNVPHDT 183
+ AG Y +P G V+ ++P PPN+ILF+ N+P +T
Sbjct: 122 KK--------AGQYYGSP-------TGLRALVLTDSPTPPQLSENPPNHILFLTNLPEET 166
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITY 242
+ L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++
Sbjct: 167 NELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 226
Query: 243 AKK 245
AKK
Sbjct: 227 AKK 229
>gi|302816013|ref|XP_002989686.1| hypothetical protein SELMODRAFT_184747 [Selaginella moellendorffii]
gi|300142463|gb|EFJ09163.1| hypothetical protein SELMODRAFT_184747 [Selaginella moellendorffii]
Length = 228
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 166/239 (69%), Gaps = 18/239 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLN KVK ++K++LHA+F +G IL+++ KT K +GQAW+VF ++ +
Sbjct: 3 DILPNETIYIKNLNSKVKKQEMKRALHALFSAYGRILDVVVCKTPKLRGQAWVVFNEIPA 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKG--KKRKDQH 127
AT+A+ M+ F +D+PM IQYAK+KSD II+ D ++ P+E+R++ E+KG KKRKDQ
Sbjct: 63 ATSALRHMKEFQLFDRPMVIQYAKSKSDAIISLTDDSYAPKEKRRKTEDKGVDKKRKDQE 122
Query: 128 DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
QA G PA+ YGA PP P G + PN+ILF+QN+P +T+
Sbjct: 123 QP-QAN-GATPAHGHVYGAAPP----PVKPGTQE--------PNSILFIQNLPDETSGPM 168
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
L+M F+++PG K+VRMV+ +PGIAFVEY DE QATVA+++LQS KI ++I+YAKK
Sbjct: 169 LEMLFTRYPGLKDVRMVDGRPGIAFVEYSDEGQATVALEALQSFKITANHAMVISYAKK 227
>gi|383847977|ref|XP_003699629.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Megachile
rotundata]
Length = 231
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 161/240 (67%), Gaps = 15/240 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++AS
Sbjct: 2 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH----EEKGKKRKDQ 126
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+ R ++ + ++ KR +
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKK 121
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
QA +Y + P +PG + +PE PPN ILF+ N+P +T+ M
Sbjct: 122 RAKEQAKHSQQISY---HAGVP-----QHPGLVNAAVPE--QPPNQILFLTNLPDETSEM 171
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
L M F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ KI + I++AKK
Sbjct: 172 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|340726396|ref|XP_003401545.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Bombus
terrestris]
gi|350423999|ref|XP_003493658.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Bombus
impatiens]
Length = 233
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 163/244 (66%), Gaps = 23/244 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++AS
Sbjct: 4 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH------EE--KGKK 122
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+ R ++ + EE + KK
Sbjct: 64 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKK 123
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
R + + +G Y A P +PG + +PE PPN ILF+ N+P +
Sbjct: 124 RAKEQAKHSQQIG--------YHAGVP----QHPGLVNTAVPE--QPPNQILFLTNLPDE 169
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLIT 241
T+ M L M F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ KI + I+
Sbjct: 170 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKIS 229
Query: 242 YAKK 245
+AKK
Sbjct: 230 FAKK 233
>gi|395859649|ref|XP_003802146.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Otolemur
garnettii]
Length = 231
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 163/236 (69%), Gaps = 10/236 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 EARPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPSAK 122
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+A G A A GA Q P P S + PPN+ILF+ N+P +T + L M
Sbjct: 123 KAVQG--GAAAPVVGAV----QGPVPAPILS-WQLSENPPNHILFLTNLPEETNELMLSM 175
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 176 LFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 231
>gi|255083026|ref|XP_002504499.1| predicted protein [Micromonas sp. RCC299]
gi|226519767|gb|ACO65757.1| predicted protein [Micromonas sp. RCC299]
Length = 224
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 147/237 (62%), Gaps = 15/237 (6%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+I P TIY+NNLNEK K D+L +SL A+F QFG I++I+A K+ K +GQAW+VF DVA
Sbjct: 2 GDIPPCATIYVNNLNEKTKKDELVKSLQAIFGQFGKIIDIVASKSYKLRGQAWVVFADVA 61
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
SATAA+ MQ FPFYDKPMRI YAKTKSD AKA+GTF P R E + K++ + A
Sbjct: 62 SATAAMRAMQEFPFYDKPMRIAYAKTKSDATAKAEGTFDPSAR--DPEMRAKRKAESQAA 119
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ A G T + P APPN ILFVQ +P TT L
Sbjct: 120 EKESQAAKAERDAASGVTAKVRTDP------------SAPPNEILFVQGLPGATTAAMLS 167
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F QFPGFKEVRMVEAKPGIAFVE+ + QA+VA+ LQ KI + + +A K
Sbjct: 168 MLFQQFPGFKEVRMVEAKPGIAFVEFETDAQASVALSGLQGFKINPTHSMTLAFAAK 224
>gi|307195443|gb|EFN77329.1| U2 small nuclear ribonucleoprotein B'' [Harpegnathos saltator]
Length = 231
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 161/244 (65%), Gaps = 23/244 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH--------EEKGKK 122
AT A+ MQGFPFYDKPMRIQYAKT SD+IAK GTF R ++ + ++ KK
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDLIAKMKGTFAERPKKPKRVVPAADEEAKRAKK 121
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
R + + +G Y A P +PG + +PE PPN ILF+ N+P +
Sbjct: 122 RAKEQAKHSQQIG--------YHAGVP----QHPGLVNTAVPE--QPPNQILFLTNLPDE 167
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLIT 241
T+ M L M F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ KI + I+
Sbjct: 168 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKIS 227
Query: 242 YAKK 245
+AKK
Sbjct: 228 FAKK 231
>gi|380024353|ref|XP_003695965.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Apis
florea]
Length = 231
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 161/244 (65%), Gaps = 23/244 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++AS
Sbjct: 2 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH------EE--KGKK 122
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+ R ++ + EE + KK
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKK 121
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
R + + +G + +PG + +PE PPN ILF+ N+P +
Sbjct: 122 RAKEQAKHSQQIGYHTGVQQ------------HPGLVNTAVPE--QPPNQILFLTNLPDE 167
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLIT 241
T+ M L M F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ KI + I+
Sbjct: 168 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKIS 227
Query: 242 YAKK 245
+AKK
Sbjct: 228 FAKK 231
>gi|148222234|ref|NP_001080089.1| U1 small nuclear ribonucleoprotein A [Xenopus laevis]
gi|27924189|gb|AAH44979.1| Snf protein [Xenopus laevis]
Length = 282
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/278 (44%), Positives = 166/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + LK +GQA+++FK+ +S
Sbjct: 5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQY+KT SDIIAK GTFV R+R+++ + K K + Q N
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKN 124
Query: 131 -QAGMGLNPAYAGAYGA---TPPLSQIP-------------------------------- 154
G L P G A P ++Q P
Sbjct: 125 AMPGAALLPGVPGQMAAMQNMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGG 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG + P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +SLQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gi|1173326|sp|P45429.1|SNRPA_XENLA RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|65181|emb|CAA41021.1| U1 A protein [Xenopus laevis]
Length = 282
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/278 (44%), Positives = 166/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + LK +GQA+++FK+ +S
Sbjct: 5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQY+KT SDIIAK GTFV R+R+++ + K K + Q N
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKN 124
Query: 131 -QAGMGLNPAYAGAYGA---TPPLSQIP-------------------------------- 154
G L P G A P ++Q P
Sbjct: 125 AMPGAALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGG 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG + P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +SLQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gi|303281170|ref|XP_003059877.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458532|gb|EEH55829.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 224
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/237 (52%), Positives = 155/237 (65%), Gaps = 15/237 (6%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+I P TIY+NNLNEK+K ++LK+SLHAVF QFG I++++A KT K +GQAW+VF+DVA
Sbjct: 2 GDIPPCPTIYVNNLNEKIKKEELKKSLHAVFSQFGKIIDVVAVKTYKLRGQAWVVFQDVA 61
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
SATAA+ +QGFPF+DKPM++ YAK KSD AK DGT+ P R E KRK A
Sbjct: 62 SATAAMRAVQGFPFFDKPMKLAYAKAKSDATAKLDGTYDP---SARDPEARAKRKAASQA 118
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ A A A G GG+ + + APPN ILFVQ +P TT L
Sbjct: 119 EEKASQAAKAEAEARG-----------GGSAPIRTDPSAPPNEILFVQGLPEATTAAMLS 167
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F QFPGFKEVRMVEAKPGIAFVE+ E QA+VA+Q LQ KI + ++YAKK
Sbjct: 168 MLFQQFPGFKEVRMVEAKPGIAFVEFTAETQASVALQGLQGFKINPTHSMTLSYAKK 224
>gi|444732044|gb|ELW72368.1| U1 small nuclear ribonucleoprotein A [Tupaia chinensis]
Length = 282
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 167/280 (59%), Gaps = 47/280 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K +D A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQDTPSAK 122
Query: 131 QAGMG-----LNPAYAGAYGATPPLSQIP------------------------------- 154
+A G + A G PP++Q P
Sbjct: 123 KAVQGGAAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPP 182
Query: 155 --------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 183 GAIPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|4759156|ref|NP_004587.1| U1 small nuclear ribonucleoprotein A [Homo sapiens]
gi|134092|sp|P09012.3|SNRPA_HUMAN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|315583598|pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
gi|315583607|pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
gi|37541|emb|CAA29653.1| unnamed protein product [Homo sapiens]
gi|340052|gb|AAA61245.1| U1 snRNP-specific protein A [Homo sapiens]
gi|12653273|gb|AAH00405.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|14249835|gb|AAH08290.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|119577399|gb|EAW56995.1| small nuclear ribonucleoprotein polypeptide A, isoform CRA_a [Homo
sapiens]
gi|208967436|dbj|BAG73732.1| small nuclear ribonucleoprotein polypeptide A [synthetic construct]
Length = 282
Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/279 (44%), Positives = 165/279 (59%), Gaps = 45/279 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
Query: 130 NQAGMGLNPAYAGAYG---ATPPLSQIP-------------------------------- 154
Q G G P G PP++Q P
Sbjct: 125 VQGG-GATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPG 183
Query: 155 -------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 184 AMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|62857647|ref|NP_001016784.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|60618430|gb|AAH90598.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|89273875|emb|CAJ82017.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
Length = 282
Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 124/279 (44%), Positives = 171/279 (61%), Gaps = 45/279 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+++S
Sbjct: 5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR------- 123
AT A+ MQGFPFYDKPMRIQY+K+ SDIIAK GT+V R+R+++ + K K +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVERDRKRQEKRKVKGQEAPGVKK 124
Query: 124 ----------------------------KDQHDANQAGM----GLNPAYAGAYGATPPLS 151
+ H A QA G+ P A G PP
Sbjct: 125 ALPGAALLPGVPGQMAGMQNIPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQIPP-G 183
Query: 152 QIPY----PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
+P+ PG + P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 184 GMPHGHLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +SLQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gi|126723082|ref|NP_001075629.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
gi|38641409|gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
Length = 282
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/278 (44%), Positives = 165/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIP--------------------------------- 154
Q G + A G PP++Q P
Sbjct: 125 VQGGAAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPPGA 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A SLQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARDSLQGFKITQNNAMKISFAKK 282
>gi|426388777|ref|XP_004060809.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Gorilla
gorilla gorilla]
Length = 282
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/279 (44%), Positives = 165/279 (59%), Gaps = 45/279 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
Query: 130 NQAGMGLNPAYAGAYG---ATPPLSQIP-------------------------------- 154
Q G G P G PP++Q P
Sbjct: 125 VQGG-GAAPVVGAVQGPVPGMPPMTQAPRIMHHLPGQPPYMPPPGMIPPPGLAPGQIPPG 183
Query: 155 -------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 184 AMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|189053747|dbj|BAG35999.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 124/279 (44%), Positives = 165/279 (59%), Gaps = 45/279 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYA+T SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYARTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
Query: 130 NQAGMGLNPAYAGAYG---ATPPLSQIP-------------------------------- 154
Q G G P G PP++Q P
Sbjct: 125 VQGG-GATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPG 183
Query: 155 -------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 184 AMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|383873129|ref|NP_001244434.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|114677331|ref|XP_512674.2| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Pan
troglodytes]
gi|297704832|ref|XP_002829283.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pongo abelii]
gi|397482634|ref|XP_003812525.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pan paniscus]
gi|402905610|ref|XP_003915609.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Papio anubis]
gi|355703564|gb|EHH30055.1| hypothetical protein EGK_10636 [Macaca mulatta]
gi|355755853|gb|EHH59600.1| hypothetical protein EGM_09749 [Macaca fascicularis]
gi|380784673|gb|AFE64212.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|383414025|gb|AFH30226.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|384943590|gb|AFI35400.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|410207170|gb|JAA00804.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
gi|410287236|gb|JAA22218.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
Length = 282
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/279 (44%), Positives = 165/279 (59%), Gaps = 45/279 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
Query: 130 NQAGMGLNPAYAGAYG---ATPPLSQIP-------------------------------- 154
Q G G P G PP++Q P
Sbjct: 125 VQGG-GAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPG 183
Query: 155 -------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 184 AMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|116175267|ref|NP_001070690.1| U1 small nuclear ribonucleoprotein A [Sus scrofa]
gi|122131847|sp|Q06AA4.1|SNRPA_PIG RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|115371743|gb|ABI96196.1| SNRPA [Sus scrofa]
Length = 282
Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 165/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIP--------------------------------- 154
Q G + A G PP++Q P
Sbjct: 125 VQGGAAAPVVGAVQGPVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|270047496|ref|NP_001161808.1| U1 small nuclear ribonucleoprotein A [Apis mellifera]
Length = 231
Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 160/244 (65%), Gaps = 23/244 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PNNTIYINNLN K+K D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++AS
Sbjct: 2 DIRPNNTIYINNLNVKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH------EE--KGKK 122
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+ R ++ + EE + KK
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKK 121
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
R + + +G + +PG + +PE PPN ILF+ N+P +
Sbjct: 122 RAKEQAKHSQQIGYHTGVQQ------------HPGLVNTAVPE--QPPNQILFLTNLPDE 167
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLIT 241
T+ M L M F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ KI + I+
Sbjct: 168 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKIS 227
Query: 242 YAKK 245
+AKK
Sbjct: 228 FAKK 231
>gi|348552486|ref|XP_003462058.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cavia
porcellus]
Length = 282
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 165/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIP--------------------------------- 154
Q G + A G PP++Q P
Sbjct: 125 VQGGAAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|351715411|gb|EHB18330.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 282
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 165/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIP--------------------------------- 154
Q G + A G PP++Q P
Sbjct: 125 VQGGAAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQMPPGA 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|395859647|ref|XP_003802145.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Otolemur
garnettii]
Length = 282
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 165/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 EARPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIP--------------------------------- 154
Q G + A G PP++Q P
Sbjct: 125 VQGGAAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|73948310|ref|XP_533663.2| PREDICTED: U1 small nuclear ribonucleoprotein A [Canis lupus
familiaris]
gi|149722301|ref|XP_001499386.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Equus
caballus]
gi|301776649|ref|XP_002923740.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Ailuropoda
melanoleuca]
gi|403305332|ref|XP_003943221.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Saimiri
boliviensis boliviensis]
gi|281340732|gb|EFB16316.1| hypothetical protein PANDA_012942 [Ailuropoda melanoleuca]
Length = 282
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 165/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIP--------------------------------- 154
Q G + A G PP++Q P
Sbjct: 125 VQGGAAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|156548050|ref|XP_001606482.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Nasonia vitripennis]
gi|345485456|ref|XP_003425274.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Nasonia vitripennis]
Length = 230
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 157/236 (66%), Gaps = 8/236 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++AS
Sbjct: 2 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRI Y+KT SDIIAK GTF R ++ + D+
Sbjct: 62 ATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRVIPA---ADEEAKK 118
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
A G TP +Q + G A + +PE PPN ILF+ N+P +T+ M L M
Sbjct: 119 AKKRAKEQAKQQQMGYTPGAAQ--HAGMANAAVPE--QPPNQILFLTNLPDETSEMMLSM 174
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ KI + I++AKK
Sbjct: 175 LFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 230
>gi|440910289|gb|ELR60098.1| U1 small nuclear ribonucleoprotein A, partial [Bos grunniens mutus]
Length = 287
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 166/280 (59%), Gaps = 47/280 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 10 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 69
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 70 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 127
Query: 131 QAGMGLNPA-----YAGAYGATPPLSQIP------------------------------- 154
+A G A G PP++Q P
Sbjct: 128 KAVQGGAAAPVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPP 187
Query: 155 --------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 188 GAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 247
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 248 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>gi|56605690|ref|NP_001008304.1| U1 small nuclear ribonucleoprotein A [Rattus norvegicus]
gi|55562825|gb|AAH86331.1| Small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
gi|149056537|gb|EDM07968.1| small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
Length = 281
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 168/281 (59%), Gaps = 50/281 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 122
Query: 131 QAGMGLNPAYAGAYGAT------PPLSQIP------------------------------ 154
+A G A A GA PP++Q P
Sbjct: 123 KAVQG--GAAAPVVGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 180
Query: 155 ---------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 181 PGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 240
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 241 GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 281
>gi|410983004|ref|XP_003997834.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Felis catus]
Length = 282
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 166/280 (59%), Gaps = 47/280 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 122
Query: 131 QAGMGLNPA-----YAGAYGATPPLSQIP------------------------------- 154
+A G A G PP++Q P
Sbjct: 123 KAVQGGAAAPVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPP 182
Query: 155 --------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 183 GAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|114051315|ref|NP_001039504.1| U1 small nuclear ribonucleoprotein A [Bos taurus]
gi|187607541|ref|NP_001119825.1| U1 small nuclear ribonucleoprotein A [Ovis aries]
gi|122142801|sp|Q2KIR1.1|SNRPA_BOVIN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|86437996|gb|AAI12545.1| Small nuclear ribonucleoprotein polypeptide A [Bos taurus]
gi|184191137|gb|ACC76781.1| SNPRA [Ovis aries]
gi|296477802|tpg|DAA19917.1| TPA: U1 small nuclear ribonucleoprotein A [Bos taurus]
Length = 282
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 166/280 (59%), Gaps = 47/280 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 122
Query: 131 QAGMGLNPA-----YAGAYGATPPLSQIP------------------------------- 154
+A G A G PP++Q P
Sbjct: 123 KAVQGGAAAPVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPP 182
Query: 155 --------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 183 GAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|226372064|gb|ACO51657.1| U1 small nuclear ribonucleoprotein A [Rana catesbeiana]
Length = 279
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 126/275 (45%), Positives = 166/275 (60%), Gaps = 40/275 (14%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + LK +GQA+++FK+V+S
Sbjct: 5 ESRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK----------- 119
AT A+ MQGFPFYDKPMRIQY+K+ SDIIAK GTFV R+R+++ + K
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTFVERKRQEKRKGKVPEVPAVKKAI 124
Query: 120 ------GKKRKDQHDANQAGMGLNPAYAGAYGATPPL-------------SQIP------ 154
G + AN GM P G TP + QIP
Sbjct: 125 PGAPVQGMPGQIPGMANIPGMTQAPRMMHMPGQTPYMHHPGMMPPPGIGPGQIPPGGMPH 184
Query: 155 ---YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
PG + P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IA
Sbjct: 185 GQMMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIA 244
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
FVE+ +E+QA A +SLQ KI Q + I++AKK
Sbjct: 245 FVEFENEVQAGAARESLQGFKITQSNSMKISFAKK 279
>gi|355721034|gb|AES07131.1| small nuclear ribonucleoprotein polypeptide A [Mustela putorius
furo]
Length = 281
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 123/277 (44%), Positives = 164/277 (59%), Gaps = 43/277 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIP--------------------------------- 154
Q G + A G PP++Q P
Sbjct: 125 VQGGAATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 LPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
IAFVE+ +E+QA A +LQ KI Q + I++AK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281
>gi|395529330|ref|XP_003766769.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Sarcophilus
harrisii]
Length = 241
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 161/243 (66%), Gaps = 14/243 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+++S
Sbjct: 5 ESRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKD-QHD 128
AT A+ MQGFPFYDKPMRIQYAK+ SDIIAK GT+V R+R R++ + KG++ +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKSDSDIIAKMKGTYVERDRKREKRKPKGQETPAVKKA 124
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIP-----YPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
A PP++Q P PG + PPN+ILF+ N+P +T
Sbjct: 125 VPGGAAAPVVAAVQPVPGMPPMTQAPRIMHHLPGXL------SENPPNHILFLTNLPEET 178
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITY 242
+ L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++
Sbjct: 179 NELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 238
Query: 243 AKK 245
AKK
Sbjct: 239 AKK 241
>gi|291234607|ref|XP_002737237.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Saccoglossus
kowalevskii]
Length = 249
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 159/249 (63%), Gaps = 15/249 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+ PN+TIYINNLNEKVK D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK+++S
Sbjct: 2 DTRPNHTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRI Y+KT SD+IAK GTFV R+R K+ E+ K + + N
Sbjct: 62 ATNALRSMQGFPFYDKPMRIGYSKTDSDVIAKMKGTFVERKREKKKTEEIAKTQAKKPKN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPG-GAKSVIPEAP------------APPNNILFVQ 177
G P GA P G S++ + P PPNNILF+
Sbjct: 122 MVS-GSAPGQQSGPGAGGAAGGAQIPNMGLPSLMSQPPPMQQAAPQSVQEQPPNNILFLT 180
Query: 178 NVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQ 236
N+P +T M LQM F+QF FKEVR+V + IAFVE+ +E QA VA +LQ KI
Sbjct: 181 NLPEETNEMMLQMLFNQFQAFKEVRLVPGRHDIAFVEFENETQAGVAKDALQGFKITPSN 240
Query: 237 QLLITYAKK 245
+ I++AKK
Sbjct: 241 AMKISFAKK 249
>gi|440355222|gb|AGC00413.1| SNF [Antheraea pernyi]
Length = 222
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 158/236 (66%), Gaps = 16/236 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK+++S
Sbjct: 2 DIRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEISS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQY+KT SD+IAK GTF R +R + + K + +
Sbjct: 62 ATVALRSMQGFPFYDKPMRIQYSKTDSDVIAKIKGTFQERPKRPKMPKGTDDSKKKKGKD 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ G +GA PG ++ E PPN ILF+ N+P T+ M L M
Sbjct: 122 VSRPG------AVHGANA-------PGVLNNINVE--QPPNQILFLTNLPDGTSEMMLSM 166
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+G+EMQ+ A ++LQ KI + IT+AKK
Sbjct: 167 LFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAKEALQGFKITPTHAMKITFAKK 222
>gi|384950746|sp|B8AM21.1|RU2B_ORYSI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|218192634|gb|EEC75061.1| hypothetical protein OsI_11177 [Oryza sativa Indica Group]
Length = 232
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 153/246 (62%), Gaps = 29/246 (11%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+ NLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE----------RRKRHEEKG 120
AT A +Q F FY K MR+QYAKTKSD +A DG+ P+E +KR E+
Sbjct: 65 ATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAEEA 124
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
++ A G G + G P PAPPNNILF+QN+P
Sbjct: 125 QQSGPNAAAQSNGTGYQASRLGKTSQEP------------------PAPPNNILFIQNLP 166
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLL 239
+TT M LQ+ F Q+PGF+EVRM+EAKPGIAFVEY D+ Q+ VAMQ+LQ KI +
Sbjct: 167 AETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMA 226
Query: 240 ITYAKK 245
I+YAKK
Sbjct: 227 ISYAKK 232
>gi|405974726|gb|EKC39350.1| U1 small nuclear ribonucleoprotein A [Crassostrea gigas]
Length = 541
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/234 (51%), Positives = 153/234 (65%), Gaps = 8/234 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN TIYINNLNEKVK D+LK+SL+A+F QFG IL+I+A KTLK +GQA+++FKD+ SA +
Sbjct: 314 PNQTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKDINSANS 373
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR-KRHEEKGKKRKDQHDANQA 132
A+ MQGFPFY+KPMRIQY+K SDIIAK GTFV R +R K HE + KK+K AN+
Sbjct: 374 ALRSMQGFPFYEKPMRIQYSKKDSDIIAKMKGTFVERPKRPKEHEPESKKKK---KANRQ 430
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
AG P P + PPN ILF+ N+P +T M L M F
Sbjct: 431 AAATT---AGIAPPAQPAMAAAPPAQPAAPTAIPEQPPNQILFLTNLPEETNEMMLSMLF 487
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ KI + I+YAKK
Sbjct: 488 NQFPGFKEVRLVPGRHDIAFVEFENEVQSGAAKDALQGFKITPSNAMKISYAKK 541
>gi|108707670|gb|ABF95465.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 231
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 166/236 (70%), Gaps = 10/236 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+ NLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A +Q F FY K MR+QYAKT+SD +A DG+ P+E+RK+ EEK +K++ +A
Sbjct: 65 ATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAEKKRRAEEAQ 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q+G A A + G S++ G S P PAPPNNILF+QN+P +TT M LQ+
Sbjct: 125 QSGPN---AAAQSNGTGYQASRL----GKTSQEP--PAPPNNILFIQNLPAETTSMMLQI 175
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGF+EVRM+EAKPGIAFVEY D+ Q+ VAMQ+LQ KI + I+YAKK
Sbjct: 176 LFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 231
>gi|115452491|ref|NP_001049846.1| Os03g0298800 [Oryza sativa Japonica Group]
gi|122247158|sp|Q10MR0.1|RU2B_ORYSJ RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|108707669|gb|ABF95464.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548317|dbj|BAF11760.1| Os03g0298800 [Oryza sativa Japonica Group]
gi|215737098|dbj|BAG96027.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624757|gb|EEE58889.1| hypothetical protein OsJ_10509 [Oryza sativa Japonica Group]
Length = 232
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 153/246 (62%), Gaps = 29/246 (11%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+ NLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE----------RRKRHEEKG 120
AT A +Q F FY K MR+QYAKT+SD +A DG+ P+E +KR E+
Sbjct: 65 ATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAEEA 124
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
++ A G G + G P PAPPNNILF+QN+P
Sbjct: 125 QQSGPNAAAQSNGTGYQASRLGKTSQEP------------------PAPPNNILFIQNLP 166
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLL 239
+TT M LQ+ F Q+PGF+EVRM+EAKPGIAFVEY D+ Q+ VAMQ+LQ KI +
Sbjct: 167 AETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMA 226
Query: 240 ITYAKK 245
I+YAKK
Sbjct: 227 ISYAKK 232
>gi|354486243|ref|XP_003505291.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Cricetulus griseus]
Length = 284
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 167/282 (59%), Gaps = 49/282 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 122
Query: 131 QAGMGLNPA-YAGAYGAT------PPLSQIP----------------------------- 154
+A G A GA PP++Q P
Sbjct: 123 KAVQGGAAAPXXXXVGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI 182
Query: 155 ----------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMV 204
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 183 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 242
Query: 205 EAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 284
>gi|344250312|gb|EGW06416.1| U1 small nuclear ribonucleoprotein A [Cricetulus griseus]
Length = 291
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 166/287 (57%), Gaps = 52/287 (18%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKA 124
Query: 130 NQAG--------MGLNPAYAGAYGA---TPPLSQIP------------------------ 154
Q G G PA + PP++Q P
Sbjct: 125 VQGGAAAPXXXXXGRCPACTVLLFSPQGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGL 184
Query: 155 ---------------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFK 199
PG P + PPN+ILF+ N+P +T + L M F+QFPGFK
Sbjct: 185 APGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 244
Query: 200 EVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
EVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 245 EVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 291
>gi|90077244|dbj|BAE88302.1| unnamed protein product [Macaca fascicularis]
Length = 197
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 153/236 (64%), Gaps = 44/236 (18%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ +KRK
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR------EKRK------ 112
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
P SQ E PA PN+ILF+ N+P +T + L M
Sbjct: 113 ------------------PKSQ------------ETPA-PNHILFLTNLPEETNELMLSM 141
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 142 LFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 197
>gi|159470585|ref|XP_001693437.1| predicted protein [Chlamydomonas reinhardtii]
gi|158282940|gb|EDP08691.1| predicted protein [Chlamydomonas reinhardtii]
Length = 233
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 150/237 (63%), Gaps = 7/237 (2%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIY+NNL EK+ +++K+ L+A+F QFG +L+++A KT + +GQAW+VF D A+
Sbjct: 2 DIPPNQTIYVNNLYEKLSKEEMKKCLYAMFSQFGRVLDVVAMKTYRLRGQAWVVFTDTAA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP-RERRKRHEEKGKKRKDQHDA 129
AT A+ MQGFPF+DKP+RI YAKTKSD +AK DGT+ P ++ R + + RK
Sbjct: 62 ATNALRTMQGFPFFDKPIRITYAKTKSDAVAKVDGTYKPDKKSRAQKNAAARGRKWSRRT 121
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
Q G G G P P S A A PN ILFVQN+P + L
Sbjct: 122 RQ---GFRDGQGGRNG-HPMRRGWPSMQAGVSAAGAANA-PNKILFVQNLPETSNEAMLG 176
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F QFPGF+EVRMVEA+PGIAFVEY +EMQ+ AMQ LQ KI + IT+AK+
Sbjct: 177 MLFQQFPGFREVRMVEARPGIAFVEYENEMQSGTAMQGLQGFKITPANAMNITFAKQ 233
>gi|351712152|gb|EHB15071.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 272
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 160/244 (65%), Gaps = 12/244 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+T+ INNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA ++FK+V+S
Sbjct: 5 ESHPNHTVSINNLNEKIKEDELKKSLYAIFSQFGHILDILVSRSLKMRGQALVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAK SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKANSDIIAKLKGTFVERDRKR--EKRKPKSQEAPSAK 122
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP--------YPGGAKSVIPEAPAPPNNILFVQNVPHD 182
+A G A A PP P PG P + PPN+ILF+ N+P +
Sbjct: 123 KAVQGGAAAPVAASWHDPPPGLAPGQMPPQQIMPGQMPPAQPLSENPPNHILFLTNLPEE 182
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-IT 241
T + L M F+QFPGF+E R+V + IAFVE+ DE+QA A ++LQ KI Q + I+
Sbjct: 183 TNELMLSMPFNQFPGFQEARLVPGRHDIAFVEF-DEVQAGAAREALQGYKITQNNAMKIS 241
Query: 242 YAKK 245
+AKK
Sbjct: 242 FAKK 245
>gi|326512082|dbj|BAJ96022.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 163/238 (68%), Gaps = 12/238 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN T+Y NLNEKVK ++LK+SL+A+ Q+G I++++A KT K +GQAW+ F ++ +
Sbjct: 5 DVPPNQTVYFKNLNEKVKKEELKRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDA 129
AT A +Q F FY K MR+QYAKTKSD AKADG++ P+E+RK+ EEK +K++ D
Sbjct: 65 ATNAFRGLQDFDFYGKKMRVQYAKTKSDCFAKADGSYAPKEKRKKQEEKAAEKKRRTEDG 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP-APPNNILFVQNVPHDTTPMAL 188
Q G A + G P S+ P P+ P APPNNILF+QN+P TT + L
Sbjct: 125 QQPGANAPVAPSNGTGHQP--SRFAKP-------PQEPAAPPNNILFLQNLPDQTTSVML 175
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
Q+ F Q+PGF+EVRM+EAKPGIAFVEY DE Q+ VAM++LQ KI + + I+YAKK
Sbjct: 176 QILFQQYPGFREVRMIEAKPGIAFVEYEDENQSMVAMEALQGFKISPENPMAISYAKK 233
>gi|339255862|ref|XP_003370674.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316965776|gb|EFV50450.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 220
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 149/225 (66%), Gaps = 18/225 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIY+NNLNEK+K D+LK++LHAVF QFGTIL+I+ KTLK +GQA++VFKD+ S
Sbjct: 3 DIPPNQTIYVNNLNEKIKKDELKRALHAVFHQFGTILDIVCLKTLKMRGQAFIVFKDLNS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV--PRERRKRHEEKGKKRKDQHD 128
AT A+ MQGFPFYDKPMRIQYAK++SD +AK GT+V P+E ++ + G+ +K++
Sbjct: 63 ATNALRSMQGFPFYDKPMRIQYAKSESDAVAKLKGTYVERPKEHQRNADLTGESKKEKKR 122
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
A +++ G V E+ PPN ILF N+P + T L
Sbjct: 123 RIAAEK----------------ARLRASEGTNYVSVESNPPPNKILFCTNLPEEATEHML 166
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
QM F+QFPGFKEVR+V + IAFVE+ +E Q+ A +LQ+ K+
Sbjct: 167 QMLFNQFPGFKEVRLVPNRHDIAFVEFDNEYQSKTARDTLQNFKV 211
>gi|432109445|gb|ELK33675.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 282
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 165/280 (58%), Gaps = 47/280 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 122
Query: 131 QA--GMGLNPAYAG---------------------------------------AYGATPP 149
+A G P A G PP
Sbjct: 123 KAVQGGAAAPVVGAVPGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPP 182
Query: 150 LSQIP---YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206
+ P PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 183 GAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|357112644|ref|XP_003558118.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like
[Brachypodium distachyon]
Length = 233
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 14/239 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIY+ NLNEK+K ++LK+SL+A+ Q+G IL+++A KT K +GQAW+ F ++ +
Sbjct: 5 DVPPNQTIYLRNLNEKIKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVAFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDA 129
AT A +Q F FY K MR+QYAKT SD AKADG++ P+E+RK+ EEK +K++ DA
Sbjct: 65 ATNAFRGLQDFDFYGKRMRVQYAKTMSDCFAKADGSYAPKEKRKKQEEKAAEKKRRTEDA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
Q G + P+ Y A+ + P E PAPPN ILF+QN+P TT M
Sbjct: 125 QQPGPNAPVAPSNVTGYQAS-RFGKAPQ---------EPPAPPNKILFIQNLPDQTTSMM 174
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
LQ+ F Q+PGF EVRM+EAKPGIAFVE+ DE Q+ VAMQ+LQ KI + + I+YAKK
Sbjct: 175 LQLLFRQYPGFWEVRMIEAKPGIAFVEFEDESQSMVAMQALQGFKISPENPMAISYAKK 233
>gi|297843490|ref|XP_002889626.1| hypothetical protein ARALYDRAFT_887900 [Arabidopsis lyrata subsp.
lyrata]
gi|297335468|gb|EFH65885.1| hypothetical protein ARALYDRAFT_887900 [Arabidopsis lyrata subsp.
lyrata]
Length = 243
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 152/227 (66%), Gaps = 16/227 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI N+NEK+K ++LK+SL+ +F FG IL+++A KT K +GQAW+VF V +
Sbjct: 5 DIPPNQSIYIKNINEKIKKEELKRSLYCLFSHFGRILDVVALKTPKLRGQAWVVFTQVTA 64
Query: 71 ATAAVEKMQGFPFYDK-----PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
A+ AV +MQ FPFYD RIQYAK+KSD + KA GTFVP+E++ + E+K ++++
Sbjct: 65 ASNAVLQMQNFPFYDTFSSLMFQRIQYAKSKSDYVTKAQGTFVPKEKKMKQEDKVERKRH 124
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
+ Q M N A PP P G ++ PPNNILF+ N+P + T
Sbjct: 125 AEETQQPSMP-NGATTQNGMPVPPFQ----PSGQDTM------PPNNILFIHNLPIEMTS 173
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
M LQ+ F Q+ GFKE+RM+EAKPGIAFVEY D++Q+++AMQ+LQ +
Sbjct: 174 MMLQLLFEQYTGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFQ 220
>gi|387018110|gb|AFJ51173.1| U1 small nuclear ribonucleoprotein A [Crotalus adamanteus]
Length = 281
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 165/274 (60%), Gaps = 44/274 (16%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + LK +GQA+++FK++ S+T A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKEICSSTNA 68
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ--- 131
+ MQGFPFYDKPMRIQYAK SDIIAK GTFV R+ RKR + K K ++ Q Q
Sbjct: 69 LRSMQGFPFYDKPMRIQYAKVDSDIIAKMKGTFVERD-RKREKRKPKGQEAQVAKKQIPG 127
Query: 132 AGMGLNPAYAGAYGATPPLSQIPY----------------------------PGGA---K 160
A + P+ G PP++Q P P GA +
Sbjct: 128 AAAPVAPSVQGTVPGMPPMNQAPCVMHHMPGQPPYMPPPGMMPPPGMAPGSIPPGAMPPQ 187
Query: 161 SVIPEAPA--------PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
++P A PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAF
Sbjct: 188 QMLPGQMATAQQLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAF 247
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
VE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 248 VEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 281
>gi|431920192|gb|ELK18231.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 282
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 165/280 (58%), Gaps = 47/280 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ESRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 122
Query: 131 QA--GMGLNPAYAG---------------------------------------AYGATPP 149
+A G P A G PP
Sbjct: 123 KAVQGGAAAPVVGAVPGPVPGMPPMTQAPRIMHHIPGQPPYMPPPGMIPPPGLAPGQIPP 182
Query: 150 LSQIP---YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206
+ P PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 183 GAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|442760027|gb|JAA72172.1| Putative spliceosomal protein snrnp-u1a/u2b [Ixodes ricinus]
Length = 239
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/225 (51%), Positives = 155/225 (68%), Gaps = 4/225 (1%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEKVK D+LK+SL+A+F QFG IL+I+A KTLK +GQA++VFKD+ S
Sbjct: 2 DIRPNHTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKDLNS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRK--RHEEKGKKRKDQHD 128
AT A+ MQGFPFYDKPMRIQY+KT SD +AK GT+V +R++ E K+ +
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYSKTDSDAVAKMKGTYVETQRKRPAADGEAAPKKSKKKK 121
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
A Q A AG + + P+ + PG +PE PPN ILF+ N+P +T M L
Sbjct: 122 APQHVASATAAVAGPHLQSQPMMMMMAPGAMMGSLPE--QPPNQILFLTNLPEETNEMML 179
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
M F+QFPGFKEVR+V + IAFVE+ +E+Q++ A ++LQ KI
Sbjct: 180 SMLFNQFPGFKEVRLVPGRHDIAFVEFENEIQSSAAKEALQGFKI 224
>gi|217069866|gb|ACJ83293.1| unknown [Medicago truncatula]
Length = 211
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 159/214 (74%), Gaps = 7/214 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI NLNEK+K D+LK+SL+ +F Q+G IL+I+A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFY+KPMRIQYAKTKSD IAK +G+FVPRE++K+ EEK +K+K ++
Sbjct: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q+ + G +GA+ S + G+ + + A PNNILF++N+P++TT L+M
Sbjct: 125 QSAV----PNGGTHGASNGGSTASFRPGSGA---QEAAAPNNILFIENLPYETTGRMLEM 177
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224
F Q+PGFKEVR++EAKPGIAFV++ D+ Q+++A
Sbjct: 178 LFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMA 211
>gi|390479015|ref|XP_003735632.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Callithrix jacchus]
Length = 275
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 164/273 (60%), Gaps = 40/273 (14%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 122
Query: 131 QA--GMGLNPAYAGAYGATPPLSQIPYP-------------------------------- 156
+A G P G P + + P
Sbjct: 123 KAVQGGAAAPVVGAVQGPVPGMPPMTPPRIMHHMPGQPPYMPPPDXPPRPAPGIPPGPPQ 182
Query: 157 ---GGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
G+ + + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFV
Sbjct: 183 HLLTGSLTPPQLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFV 242
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
E+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 EFDNEVQAGAARDALQGFKITQNNAMKISFAKK 275
>gi|357621621|gb|EHJ73396.1| U1 small nuclear ribonucleoprotein A [Danaus plexippus]
Length = 220
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 158/240 (65%), Gaps = 26/240 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEK+K ++LK+SL+A+F QFG ILEI+A KTLK +GQA+++FK+++S
Sbjct: 2 DIRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEISS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR----KRHEEKGKKRKDQ 126
AT A+ MQGFPFYDKPMRIQY KT SD+IAK GTF R +R K +EK KK KD
Sbjct: 62 ATVALRSMQGFPFYDKPMRIQYCKTDSDVIAKMKGTFQERPKRPKLPKGSDEKKKKNKDP 121
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
+ N G G P +V A PPN ILF+ N+P +T+ M
Sbjct: 122 NRPNVPGFG-------------------QPSVLNNV--NAEQPPNQILFLTNLPDETSEM 160
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
L M F+QFPGFKEVR+V + IAFVE+ +EMQ+ A ++LQ KI + I++AKK
Sbjct: 161 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFANEMQSAAAKEALQGFKITPTHAMKISFAKK 220
>gi|410909846|ref|XP_003968401.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Takifugu rubripes]
Length = 273
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/273 (44%), Positives = 164/273 (60%), Gaps = 42/273 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL +T+K KGQA+++FK+V S
Sbjct: 5 EVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTMKMKGQAFVIFKEVNS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH------EEKGKKRK 124
A+ A+ MQGFPFYDKPMRIQYAK SDIIAK GT+V R+R+K + G K+
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSSGSKK- 123
Query: 125 DQHDANQAGMGLNPAYAGAYGATPPLSQIP---------------------------YPG 157
+A A + G PP+SQ P P
Sbjct: 124 ---NAQGAAASMVAGVPGGMAGMPPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQMPP 180
Query: 158 GAK--SVIPE--APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
GA +P+ + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFV
Sbjct: 181 GAMMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFV 240
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
E+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 241 EFDNEVQAGAARDALQGFKITQSNAMKISFAKK 273
>gi|410909848|ref|XP_003968402.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Takifugu rubripes]
Length = 279
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/279 (43%), Positives = 163/279 (58%), Gaps = 48/279 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL +T+K KGQA+++FK+V S
Sbjct: 5 EVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTMKMKGQAFVIFKEVNS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH------EEKGKKRK 124
A+ A+ MQGFPFYDKPMRIQYAK SDIIAK GT+V R+R+K + G K+
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSSGSKKN 124
Query: 125 DQHDANQAGMGLNPAYAGAYGATPPLSQIP---------------------------YPG 157
Q A G+ G PP+SQ P P
Sbjct: 125 AQGAAASMVAGV----PGGMAGMPPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQMPP 180
Query: 158 GAK----------SVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
GA ++ + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 181 GAMMPGQMPQQVCCLLVVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 240
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 241 HDIAFVEFDNEVQAGAARDALQGFKITQSNAMKISFAKK 279
>gi|225710606|gb|ACO11149.1| U1 small nuclear ribonucleoprotein A [Caligus rogercresseyi]
Length = 217
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 148/236 (62%), Gaps = 21/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN+TIYINNLNEKVK D LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DVRPNHTIYINNLNEKVKKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
T A+ MQGFPFYDKPMRI ++KT SDIIAK GTF R ++
Sbjct: 62 GTNALRSMQGFPFYDKPMRISFSKTDSDIIAKLKGTFTERPKK----------------- 104
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
G + Q+ GA +V P APPN ILF+ N+P +T M L M
Sbjct: 105 --ASGDSKKAKKKAAKEAAARQLCALAGANAVHP-GEAPPNQILFLTNLPDETNEMMLSM 161
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +SLQ KI + I++AKK
Sbjct: 162 LFNQFPGFKEVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|242247219|ref|NP_001156146.1| U1 small nuclear ribonucleoprotein A-like [Acyrthosiphon pisum]
gi|239790514|dbj|BAH71814.1| ACYPI003668 [Acyrthosiphon pisum]
Length = 224
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 155/237 (65%), Gaps = 17/237 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+ PN+TIYINNLNEK+K D LK+SL+A+F QFG IL+I+A K +K GQA+++FKD+ S
Sbjct: 3 DTRPNHTIYINNLNEKIKKDDLKKSLYAIFSQFGQILDIVAMKGIKMNGQAFVIFKDITS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ MQGFPFYDKPMRIQ+AK++SDIIAK GTFV R+++ + + ++ K + A
Sbjct: 63 STNALRAMQGFPFYDKPMRIQFAKSESDIIAKMKGTFVERQKKPKKPKDDEEAKKRRKA- 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAK-SVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
A L+Q PGG +PE PPN ILF+ N+P +TT M L
Sbjct: 122 ------------AKEQARALAQQNNPGGVSGGNVPE--QPPNQILFLTNLPDETTEMMLS 167
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ +E Q+ A SL KI + IT+AKK
Sbjct: 168 MLFNQFPGFKEVRLVPNRHDIAFVEFENEHQSNTAKLSLNGFKITPTHAMKITFAKK 224
>gi|58394659|ref|XP_320869.2| AGAP011637-PA [Anopheles gambiae str. PEST]
gi|55235062|gb|EAA00418.2| AGAP011637-PA [Anopheles gambiae str. PEST]
Length = 216
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 153/240 (63%), Gaps = 30/240 (12%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEK+ +LK+SL+A+F QFG IL+I+A+KTLK +GQA+++FK+++S
Sbjct: 2 DIRPNHTIYINNLNEKINKVELKKSLYAIFSQFGQILDIVAYKTLKMRGQAFIIFKEISS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH----EEKGKKRKDQ 126
AT A+ MQGFPFYDKPMRI+Y+KT SD+IAK GTF R +R + + + KK K
Sbjct: 62 ATNAMRTMQGFPFYDKPMRIKYSKTDSDMIAKLKGTFQERPKRVKQPKPIQTEDKKAKKL 121
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
+A + G N A A PPN ILF+ N+P +T M
Sbjct: 122 KNAGEVGATNNSA-------------------------TAEQPPNQILFLTNLPEETNEM 156
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
L M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + I++AKK
Sbjct: 157 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|302832471|ref|XP_002947800.1| hypothetical protein VOLCADRAFT_103581 [Volvox carteri f.
nagariensis]
gi|300267148|gb|EFJ51333.1| hypothetical protein VOLCADRAFT_103581 [Volvox carteri f.
nagariensis]
Length = 224
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 152/236 (64%), Gaps = 14/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYINNL EK+ ++LK+ L+A+F QFG I++++A KT + +GQAW+VF D A+
Sbjct: 2 DIPPNQTIYINNLYEKLGKEELKKCLYAMFSQFGRIMDVVAMKTYRLRGQAWVVFTDTAA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPF+DKP+RI YAK KSD +AK DGT+ P + K+R ++ A
Sbjct: 62 ATNALRTMQGFPFFDKPIRITYAKGKSDAVAKVDGTYKPDK---------KQRAQKNAAA 112
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ M P A GA+ GG + PN ILFVQN+P ++ L M
Sbjct: 113 REAMLKRPTGGKAAGASVGGGSAQGAGGGSGL----ANAPNKILFVQNLPENSNEAMLGM 168
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F QFPGF+EVRMVEA+PGIAFVE+ ++MQ+T AMQ LQ KI + I+YAK+
Sbjct: 169 LFQQFPGFREVRMVEARPGIAFVEFENDMQSTTAMQGLQGFKITPANAMNISYAKQ 224
>gi|114052106|ref|NP_056597.3| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|114052541|ref|NP_001040102.1| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|41017904|sp|Q62189.3|SNRPA_MOUSE RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|349004|gb|AAC37611.1| small nuclear RNA [Mus musculus]
gi|13096860|gb|AAH03229.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|62740156|gb|AAH94006.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|66794539|gb|AAH96648.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|148692250|gb|EDL24197.1| mCG22754, isoform CRA_a [Mus musculus]
gi|148692251|gb|EDL24198.1| mCG22754, isoform CRA_a [Mus musculus]
Length = 287
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 164/281 (58%), Gaps = 50/281 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + +K +GQA+++FK+V S
Sbjct: 11 ETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTS 70
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+V R+R++ E++ K ++ A
Sbjct: 71 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKR--EKRKPKSQETPAAK 128
Query: 131 QAGMGLNPAYAGAYGAT------PPLSQIP------------------------------ 154
+A G A A GA PP+ Q P
Sbjct: 129 KAVQGG--AAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 186
Query: 155 ---------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 187 PGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 246
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 247 GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>gi|12851426|dbj|BAB29037.1| unnamed protein product [Mus musculus]
Length = 287
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/277 (44%), Positives = 163/277 (58%), Gaps = 42/277 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + +K +GQA+++FK+V S
Sbjct: 11 ETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTS 70
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+V R+R R++ + K ++ A
Sbjct: 71 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKA 130
Query: 130 NQAG-----MGLNPAYAG--------------------------------AYGATPPLSQ 152
Q G GL+ G A G PP +
Sbjct: 131 VQVGQLRPWWGLSQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAM 190
Query: 153 IP---YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 191 PPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD 250
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 251 IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>gi|47225009|emb|CAF97424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/272 (45%), Positives = 166/272 (61%), Gaps = 41/272 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + +K KGQA+++FK+V S
Sbjct: 5 EVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMKGQAFVIFKEVNS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE-----EKGKKRKD 125
A+ A+ MQGFPFYDKPMRIQYAK SDIIAK GT+V R+R+K + + G K+
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSGSKKNA 124
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIP---------------------------YPGG 158
Q A G+ GA PP+SQ P P G
Sbjct: 125 QAAAASMVAGV----PGAMAGMPPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQMPPG 180
Query: 159 AK--SVIPE--APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVE 214
A +P+ + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE
Sbjct: 181 AMMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVE 240
Query: 215 YGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ +E+QA A ++LQ KI Q + I++AKK
Sbjct: 241 FDNEVQAAAAREALQGFKITQTNAMKISFAKK 272
>gi|126329351|ref|XP_001371614.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Monodelphis
domestica]
Length = 340
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 165/277 (59%), Gaps = 42/277 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+++S
Sbjct: 64 ESRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISS 123
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKK------- 122
AT A+ MQGFPFYDKPMRIQYAK+ SDIIAK GT+V R+R R++ + KG++
Sbjct: 124 ATNALRSMQGFPFYDKPMRIQYAKSDSDIIAKMKGTYVERDRKREKRKPKGQETPAVKKA 183
Query: 123 -----RKDQHDANQAGMGLNPAYAG-------------------------AYGATPPLSQ 152
A Q G+ P A G PP +
Sbjct: 184 VPGGAAAPVVAAVQPVPGMPPMTQAPRIMHHLPGQPPYMPPPGMIPPPGLAPGQIPPGAM 243
Query: 153 IP---YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 244 PPQQMMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD 303
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 304 IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 340
>gi|323450983|gb|EGB06862.1| hypothetical protein AURANDRAFT_28680 [Aureococcus anophagefferens]
Length = 214
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 148/235 (62%), Gaps = 25/235 (10%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ PN T+YINNLNEK+K D LK+S+++VF QFG IL+++ + LK +GQAW+VF DV +A
Sbjct: 4 VQPNQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAA 63
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
T A+ +MQGFPF+DKPMRI +AK KSD+++KADG+FV RE+RKR K
Sbjct: 64 TNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKREAPPPKAPPATE---- 119
Query: 132 AGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMF 191
+ P AK+ + A P+N+LF Q++P D M L +
Sbjct: 120 --------------------ALEAPKPAKAAKADKNATPSNVLFAQDLPDDCNDMMLSIL 159
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+ GFKEVRMV K GIAFVE+ DE QA++A+Q L + K+ L +++AK+
Sbjct: 160 FQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214
>gi|225719682|gb|ACO15687.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 153/236 (64%), Gaps = 21/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN+TIYINNLNEKVK D LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 EVRPNHTIYINNLNEKVKKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRI ++K+ SD+IAK GTF R ++ + K K+K +A
Sbjct: 62 ATNALRSMQGFPFYDKPMRITFSKSDSDVIAKIKGTFTERPKKAAGDSKKAKKKAAKEAA 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ A AGA P APPN ILF+ N+P +T M L M
Sbjct: 122 ARQLC---ALAGANAVHP-----------------GEAPPNQILFLTNLPDETNEMMLSM 161
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +SLQ KI + I++AKK
Sbjct: 162 LFNQFPGFKEVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|330842469|ref|XP_003293200.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
gi|325076492|gb|EGC30273.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
Length = 233
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 156/236 (66%), Gaps = 12/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIY+NNL EK+ +L++ L+++F ++G ILEI A K+LK +GQA++VFKD+ S
Sbjct: 9 DIPPNQTIYVNNLYEKISKKKLREHLYSLFSKYGQILEIEASKSLKMRGQAFIVFKDITS 68
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ +M GF F D+PM+IQY+K KSD ++K DGT++ ++R++ + K + D
Sbjct: 69 ASNALREMNGFNFLDRPMKIQYSKNKSDAVSKLDGTYMEKKRQREENNEKKINIKKQDRK 128
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
G N G T + IP S + PPN LFV+N+P PM L+M
Sbjct: 129 VTGGQKNKN-----GETLSVGNIP------SNLQPRDLPPNKTLFVENLPDKCDPMMLEM 177
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
FSQFPG+KEV MVE+K GIAFVE+ DE ++ +AMQSLQ K+ Q++ ++I++AK+
Sbjct: 178 LFSQFPGYKEVHMVESKKGIAFVEFQDESKSGLAMQSLQHFKVTQEKPMVISFAKQ 233
>gi|324523388|gb|ADY48239.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 228
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 152/238 (63%), Gaps = 17/238 (7%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN+TIYINNLNEK K ++L+++L+ +F +FG ++++LAFKTLK +GQA ++FK+++SA
Sbjct: 4 IKPNHTIYINNLNEKTKKEELRKALYTIFSEFGQVIDVLAFKTLKMRGQAHVIFKEMSSA 63
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR---KRHEEKGKKRKDQHD 128
+ A+ MQGFPFYDKPMRIQ+A+ SD+IAKA GT+V R+++ + EK KKR D
Sbjct: 64 SNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYVDRQKKYQLAKQAEKRKKRGYPKD 123
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
+ GATP + A +V E PPN ILF N+P++TT L
Sbjct: 124 SKN-------------GATPGHVENTVSDNAATVTVEKTNPPNKILFCTNLPNETTKQML 170
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+ FS +PG K++R V +P IAFVE+ E +A VA +L KI Q + + YA K
Sbjct: 171 SILFSPYPGLKDIRRVPDRPDIAFVEFESEGEAIVARTALNDFKITPSQAIRVDYANK 228
>gi|324507603|gb|ADY43223.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 226
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 157/240 (65%), Gaps = 21/240 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEK K D+LK++L+A+F QFG I++ILAFKTLK +GQA ++FK+++S
Sbjct: 3 DIRPNHTIYINNLNEKTKKDELKKALYAIFSQFGQIIDILAFKTLKMRGQAHVIFKEISS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH----EEKGKKRKDQ 126
AT A+ MQGFPFYDKPMRIQ+A+ SD+IAKA GT+ +R K+H + G+KRK
Sbjct: 63 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYT--DRPKKHLLAKQAAGEKRK-- 118
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
+AG + A A +P A +V E PPN ILF N+P +TT
Sbjct: 119 ----KAGPPRDSKKARVEKA------VPNKPAAAAV--EKTNPPNKILFCTNLPEETTEQ 166
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
L + F+ +PG K++R + +P IAFVE+ E +ATVA +L + KI Q++ + YA K
Sbjct: 167 MLSLLFNPYPGLKDIRRIPNRPDIAFVEFESEGEATVARNALNNFKITPSQVMHVNYANK 226
>gi|449280001|gb|EMC87413.1| U2 small nuclear ribonucleoprotein B'' [Columba livia]
Length = 226
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 158/236 (66%), Gaps = 12/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E+RK ++ + + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ + GATP + P +P+ PPN ILF+ N+P +T M L M
Sbjct: 122 KKVI---------QGATPNSASAPGTAAQNQQVPD--NPPNYILFLNNLPEETNEMMLSM 170
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 171 LFNQFPGFKEVRLVPGRHDIAFVEFENENQAGAARDALQGFKITPSHAMKITYAKK 226
>gi|225719260|gb|ACO15476.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 153/236 (64%), Gaps = 21/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN+TIYINNLN KV+ D LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 EVRPNHTIYINNLNGKVRKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRI ++K+ SD+IAK GTF R ++ + K K+K +A
Sbjct: 62 ATNALRSMQGFPFYDKPMRITFSKSDSDVIAKIKGTFTERPKKAAGDSKKAKKKAAKEAA 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ A AGA A P APPN ILF+ N+P +T M L M
Sbjct: 122 ARQLC---ALAGANAAHP-----------------GEAPPNQILFLTNLPDETNEMMLSM 161
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +SLQ KI + I++AKK
Sbjct: 162 LFNQFPGFKEVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|41054443|ref|NP_955965.1| U1 small nuclear ribonucleoprotein A [Danio rerio]
gi|39850066|gb|AAH64308.1| Small nuclear ribonucleoprotein polypeptide A [Danio rerio]
Length = 281
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 166/281 (59%), Gaps = 46/281 (16%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G E+ N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL +TLK KGQA+++FK++
Sbjct: 3 GQEMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEI 62
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
SA+ A+ MQGFPFYDKPMRIQY+K SDIIAK GTFV R+R+K ++
Sbjct: 63 NSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKPKVPEAGAGK 122
Query: 129 ANQAGMGLNPAYAGAYGAT---PPLS-----------------------------QIP-- 154
+ G PA AG A PP+S Q+P
Sbjct: 123 KGGS--GATPAMAGVPAAIPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPNMAPGQMPPG 180
Query: 155 -------YPGGAKSVIPE--APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PG +P+ + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 181 AMPPGGMMPGQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 240
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A ++LQ KI Q + I++AKK
Sbjct: 241 GRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281
>gi|50738734|ref|XP_419331.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Gallus
gallus]
gi|326914835|ref|XP_003203728.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Meleagris
gallopavo]
Length = 226
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 157/237 (66%), Gaps = 14/237 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E+RK ++ + + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAAN 121
Query: 131 QAGM-GLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ + G A G +P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKIIQGATQNSTSAPGTSPQNQQVP------------DNPPNYILFLNNLPEETNEMMLS 169
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 170 MLFNQFPGFKEVRLVPGRHDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 226
>gi|432890232|ref|XP_004075429.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Oryzias latipes]
gi|432890234|ref|XP_004075430.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Oryzias latipes]
Length = 272
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/272 (45%), Positives = 164/272 (60%), Gaps = 41/272 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL +TLK KGQA+++FK++ S
Sbjct: 5 EVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFKEINS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD--QHD 128
A+ A+ MQGFPFYDKPMRIQY+KT SDIIAK GT+V RER+K + + +
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTYVERERKKEKRKPKPEGTGAKKAA 124
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPY----------------------------PGGAK 160
A G+ A G PP+SQ P PG
Sbjct: 125 AAAMMAGVPTAMPG----MPPMSQAPRMMHIPGQPAYMPPPGMMPPPGMAPGQIPPGAMG 180
Query: 161 SVIPE------APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVE 214
++P A PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE
Sbjct: 181 QMMPGQMPQQVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVE 240
Query: 215 YGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ +E+QA A SLQ KI Q + I++AKK
Sbjct: 241 FDNEVQAGAARDSLQGFKITQTHAMKISFAKK 272
>gi|355784710|gb|EHH65561.1| U2 small nuclear ribonucleoprotein B'' [Macaca fascicularis]
Length = 225
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G T P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNTTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITTSHAMKITYAKK 225
>gi|290562822|gb|ADD38806.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 151/233 (64%), Gaps = 21/233 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P++TIYINNLNEKVK + LK+SL+A+F QFG ILEI+A KTLK +GQA+++FK++ SAT
Sbjct: 5 PSHTIYINNLNEKVKKEDLKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEITSATN 64
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ MQGFPFYDKPMRI ++KT SD+IAK GT+ R ++ + K K++ +A
Sbjct: 65 AMRSMQGFPFYDKPMRIAFSKTDSDVIAKIKGTYQERPKKAASDSKKAKKRAAKEAAA-- 122
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
QI GA +V P APPN ILF+ N+P +T M L M F+
Sbjct: 123 -----------------RQICALAGANAVHP-GEAPPNQILFLTNLPDETNEMMLSMLFN 164
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
QFPGFKEVR+V + IAFVE+ +E+Q+ A SLQ KI + I++AKK
Sbjct: 165 QFPGFKEVRLVPNRHDIAFVEFENEVQSAAARGSLQGFKITPNASMKISFAKK 217
>gi|123994687|gb|ABM84945.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|261861662|dbj|BAI47353.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
Length = 225
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKSGQGTPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|395507829|ref|XP_003758221.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Sarcophilus
harrisii]
Length = 225
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 156/236 (66%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SD+I+K GTF +E++K ++ + + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDVISKMRGTFADKEKKKEKKKAKSLEQTANAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQAAPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|395858003|ref|XP_003801365.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Otolemur
garnettii]
Length = 225
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 158/237 (66%), Gaps = 15/237 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAATTAN 121
Query: 131 QA-GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G+ P A G + P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQGI-PNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|344279401|ref|XP_003411476.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Loxodonta
africana]
Length = 225
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 155/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAATTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANAQGNSTPSPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|431894149|gb|ELK03949.1| U2 small nuclear ribonucleoprotein B'' [Pteropus alecto]
Length = 291
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
Q +I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK+
Sbjct: 61 QNMDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKE 120
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQH 127
+ S+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ +
Sbjct: 121 LGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAM 180
Query: 128 DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
AN+ P A G P Q+P PPN ILF+ N+P +T M
Sbjct: 181 TANKKPGQGTPNSANTQGNVTPNPQVP------------DYPPNYILFLNNLPEETNEMM 228
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
L M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 229 LSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITLYHAMKITYAKK 287
>gi|301787297|ref|XP_002929064.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Ailuropoda
melanoleuca]
gi|410954385|ref|XP_003983845.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Felis
catus]
gi|410954387|ref|XP_003983846.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Felis
catus]
gi|281346668|gb|EFB22252.1| hypothetical protein PANDA_019153 [Ailuropoda melanoleuca]
Length = 225
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 155/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNAANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|444729539|gb|ELW69952.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
Length = 225
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 155/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAATTAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|386781069|ref|NP_001247823.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|402883260|ref|XP_003905142.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Papio
anubis]
gi|402883262|ref|XP_003905143.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Papio
anubis]
gi|402883264|ref|XP_003905144.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 3 [Papio
anubis]
gi|355563375|gb|EHH19937.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|380787253|gb|AFE65502.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|383414075|gb|AFH30251.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|384942630|gb|AFI34920.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
Length = 225
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G T P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNTTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|295314954|gb|ADF97627.1| small nuclear ribonucleoprotein polypeptide A [Hypophthalmichthys
molitrix]
Length = 281
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 164/281 (58%), Gaps = 46/281 (16%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G E+ N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL TLK +GQA+++FK++
Sbjct: 3 GQEMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSPTLKMRGQAFVIFKEI 62
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
SA+ A+ MQGFPFYDKPMRIQYAK SDIIAK GT+V R+R+K ++
Sbjct: 63 NSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKPKAPEPGAGK 122
Query: 129 ANQAGMGLNPAYAG---AYGATPPLS-----------------------------QIP-- 154
A PA AG A PP+S Q+P
Sbjct: 123 KGGA--AATPAMAGVPAAMPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPGMAPGQMPPG 180
Query: 155 -------YPGGAKSVIPE--APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PG +P+ + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 181 AMPPGQMMPGQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 240
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A ++LQ KI Q + I++AKK
Sbjct: 241 GRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281
>gi|223649102|gb|ACN11309.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 160/237 (67%), Gaps = 21/237 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K D+LK+SL+A+F QFG +++I+A KT+K +GQA++VFK++AS
Sbjct: 2 DIRPNHTIYINNVNDKIKKDELKRSLYALFSQFGQVMDIVAMKTMKMRGQAFVVFKELAS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY+KPMRIQYAKT S++I+K GTF ++++K ++K +DQ
Sbjct: 62 STNALRQLQGFPFYNKPMRIQYAKTDSEVISKIRGTFGDKDKKKDRKKKA---QDQ---- 114
Query: 131 QAGMGLNPAYAGAYGATPPLS-QIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
A + PA A P + Q+P PPN ILF+ N+P +T M L
Sbjct: 115 VANVAKKPALGSANTNNAPTTMQVP------------DNPPNYILFLNNLPEETNEMMLS 162
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
M F+QFPGFKEVR+V K I+FVE+ E QA VA +LQ +I Q + ITYAKK
Sbjct: 163 MLFNQFPGFKEVRLVPGKHDISFVEFESEGQAGVAKDALQGFRITAQCAMKITYAKK 219
>gi|226443332|ref|NP_001139849.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
gi|221219334|gb|ACM08328.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 159/237 (67%), Gaps = 21/237 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K D+LK+SL+A+F QFG +++I+A KT+K +GQA++VFK++AS
Sbjct: 2 DIRPNHTIYINNVNDKIKKDELKRSLYALFSQFGQVMDIVAMKTMKMRGQAFVVFKELAS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+ PMRIQYAKT S++I+K GTF ++++K ++K +DQ
Sbjct: 62 ATNALRQLQGFPFYNNPMRIQYAKTDSEVISKIRGTFGDKDKKKDRKKKA---QDQ---- 114
Query: 131 QAGMGLNPAYAGAYGATPPLS-QIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
A + PA A P + Q+P PPN ILF+ N+P +T M L
Sbjct: 115 VANVAKKPALGSASTNNAPTTMQVP------------DNPPNYILFLNNLPEETNEMMLS 162
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
M F+QFPGFKEVR+V K I+FVE+ E QA VA +LQ +I Q + ITYAKK
Sbjct: 163 MLFNQFPGFKEVRLVPGKHDISFVEFESEGQAGVAKDALQGFRITAQCAMKITYAKK 219
>gi|23956110|ref|NP_067310.1| U2 small nuclear ribonucleoprotein B'' [Mus musculus]
gi|52783420|sp|Q9CQI7.1|RU2B_MOUSE RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|12847289|dbj|BAB27510.1| unnamed protein product [Mus musculus]
gi|12851400|dbj|BAB29026.1| unnamed protein product [Mus musculus]
gi|20072417|gb|AAH26794.1| U2 small nuclear ribonucleoprotein B [Mus musculus]
gi|126035620|gb|ABN72533.1| U2 small nuclear ribonucleoprotein B [Mus spretus]
gi|148696479|gb|EDL28426.1| mCG19497, isoform CRA_c [Mus musculus]
Length = 225
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNAANTQGTAAPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|384251055|gb|EIE24533.1| U1 small nuclear ribonucleo protein A [Coccomyxa subellipsoidea
C-169]
Length = 224
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 150/240 (62%), Gaps = 23/240 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I+PN TIY+NNL EK+K + LK+S++A+F QFG IL+++A KT + +GQAW+VF D S
Sbjct: 3 DIAPNQTIYVNNLPEKIKKEDLKKSIYAIFSQFGKILDVVALKTYRLRGQAWVVFADQKS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE----EKGKKRKDQ 126
A A+ MQGFPF++KP+R+ YAK +SD +AK F +++++R + E+ K R +
Sbjct: 63 ADDAIRSMQGFPFFEKPIRLSYAKGESDAVAKLHNRFEEKDKKERQKHNKLERVKGRHRE 122
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
H Q P + + P++ PG APP+ ILFVQN+P +TT
Sbjct: 123 HRLQQ-----QPLWCASIILAAPIA----PGN---------APPHKILFVQNLPEETTSA 164
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
L + F Q+ G+ E RMVEA+PGIAFVE+ DE +ATVAM LQ KI I+YA +
Sbjct: 165 MLALLFQQYAGYIETRMVEARPGIAFVEFEDEDKATVAMAGLQGFKITATNAFTISYANR 224
>gi|440893400|gb|ELR46188.1| U2 small nuclear ribonucleoprotein B'', partial [Bos grunniens
mutus]
Length = 233
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 154/239 (64%), Gaps = 13/239 (5%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
Q +I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK+
Sbjct: 7 QNMDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKE 66
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQH 127
+ S+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ +
Sbjct: 67 LGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAT 126
Query: 128 DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
N+ P A G P Q+P PPN ILF+ N+P +T M
Sbjct: 127 TVNKKPGQGTPNSANTQGNATPNPQVP------------DYPPNYILFLNNLPEETNEMM 174
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
L M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 175 LSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 233
>gi|4507123|ref|NP_003083.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|38149981|ref|NP_937863.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|332238115|ref|XP_003268248.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Nomascus leucogenys]
gi|332238117|ref|XP_003268249.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Nomascus leucogenys]
gi|397478615|ref|XP_003810638.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Pan
paniscus]
gi|397478617|ref|XP_003810639.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pan
paniscus]
gi|426391004|ref|XP_004061878.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Gorilla gorilla gorilla]
gi|426391006|ref|XP_004061879.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Gorilla gorilla gorilla]
gi|134095|sp|P08579.1|RU2B_HUMAN RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|340105|gb|AAA36796.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|17390031|gb|AAH18022.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|22477822|gb|AAH36737.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|119630689|gb|EAX10284.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|119630690|gb|EAX10285.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|123979922|gb|ABM81790.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|189066590|dbj|BAG35840.1| unnamed protein product [Homo sapiens]
gi|410226668|gb|JAA10553.1| small nuclear ribonucleoprotein polypeptide B [Pan troglodytes]
gi|410226670|gb|JAA10554.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410263358|gb|JAA19645.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410342435|gb|JAA40164.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
Length = 225
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|403283665|ref|XP_003933231.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Saimiri
boliviensis boliviensis]
Length = 225
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKGKKKAKTVEQTATTTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|348534739|ref|XP_003454859.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Oreochromis
niloticus]
Length = 282
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 164/281 (58%), Gaps = 49/281 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + +K KGQA+++FK++ S
Sbjct: 5 EVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARNIKMKGQAFVIFKEINS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE-----EKGKKRKD 125
A+ A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+V R+R+K + + +K
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKKEKKKIKGPDATGPKKG 124
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIP------------------------------- 154
A A + PA A PP+SQ P
Sbjct: 125 VAGAGAAMVAGVPA---AMPGMPPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQMPPG 181
Query: 155 -------YPGGAKSVIPE--APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PG +P+ A PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 182 AIPPGQMMPGQMPGQMPQQVAENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 242 GRHDIAFVEFENEVQAGAARDALQGFKITQTNAMKISFAKK 282
>gi|157819927|ref|NP_001102062.1| U2 small nuclear ribonucleoprotein B'' [Rattus norvegicus]
gi|354492046|ref|XP_003508163.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cricetulus
griseus]
gi|149041257|gb|EDL95190.1| rCG27500, isoform CRA_c [Rattus norvegicus]
gi|197245976|gb|AAI68760.1| Small nuclear ribonucleoprotein polypeptide B'' [Rattus norvegicus]
Length = 225
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNAAPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|387018112|gb|AFJ51174.1| u2 small nuclear ribonucleoprotein B-like [Crotalus adamanteus]
Length = 225
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+YINN+N+K+K D+LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTLYINNVNDKIKKDELKRSLYALFSQFGHVVDIVALKTMKMRGQAFIIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY KPMRIQYAKT S++I+K GTF +E+RK ++ + +
Sbjct: 62 ATNALRQLQGFPFYGKPMRIQYAKTDSEVISKMRGTFADKEKRKEKKKTKSLEQAANANK 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ G N A G Q+P PPN+ILF+ N+P +T M L M
Sbjct: 122 KPNQGANQNSTNAQGNASQNQQVP------------DNPPNHILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + I+FVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDISFVEFENEGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|114681082|ref|XP_514523.2| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 5 [Pan
troglodytes]
gi|114681084|ref|XP_001137830.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 4 [Pan
troglodytes]
gi|296200238|ref|XP_002747509.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Callithrix jacchus]
gi|296200240|ref|XP_002747510.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 3
[Callithrix jacchus]
Length = 225
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAATTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|449495575|ref|XP_004176204.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Taeniopygia
guttata]
Length = 225
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 158/237 (66%), Gaps = 15/237 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E+RK ++ + + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKTLEQSANAPN 121
Query: 131 QAGM-GLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ + G A A G TP +Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKVIQGATQNSASAPGTTPQ-NQVP------------DNPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENENQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|359718900|ref|NP_001240769.1| U2 small nuclear ribonucleoprotein B'' [Equus caballus]
gi|328908863|gb|AEB61099.1| u2 small nuclear ribonucleoprotein B''-like protein [Equus
caballus]
Length = 225
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSVNTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|225713086|gb|ACO12389.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 152/233 (65%), Gaps = 21/233 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P++TIYINNLNEKVK + LK+SL+A+F QFG ILEI+A KTLK +GQA+++FK++ SAT
Sbjct: 5 PSHTIYINNLNEKVKKEDLKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEITSATN 64
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ MQGFPFYDKPMRI ++KT SD+IAK GT+ R ++ + K K+K +A
Sbjct: 65 AMRSMQGFPFYDKPMRIAFSKTDSDVIAKIKGTYQERPKKAASDSKKAKKKAAKEAAA-- 122
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
QI GA +V P APPN ILF+ N+P +T M L M F+
Sbjct: 123 -----------------RQICALAGANAVHP-GEAPPNQILFLTNLPDETNEMMLSMLFN 164
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
QFPGFKEVR+V + IAFVE+ +E+Q+ A +SLQ KI + I++AKK
Sbjct: 165 QFPGFKEVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|391337372|ref|XP_003743043.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Metaseiulus occidentalis]
Length = 212
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 151/236 (63%), Gaps = 26/236 (11%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PNNTIYINNLNEKVK ++LK+SL A+F QFG IL+I+A KTLK +GQA++ FK++ +
Sbjct: 2 DMRPNNTIYINNLNEKVKKEELKKSLFAIFSQFGPILDIVALKTLKMRGQAFVAFKEINA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPF+DKPMRIQYAK+ SD++AK GTFV R+++ + + KK++ +
Sbjct: 62 ASEALRSMQGFPFFDKPMRIQYAKSDSDVVAKMKGTFVERQKKPIEKVQPKKKESKFRRF 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
G P G P A PPN ILF+ +P +T M LQM
Sbjct: 122 XVATG--------------------PSG-----PVADQPPNAILFLTGLPEETNDMMLQM 156
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F QFPGFKEVR++ +P IAFVEY DE Q+T A LQ K+ + IT+AKK
Sbjct: 157 LFGQFPGFKEVRLIPGRPDIAFVEYEDEAQSTAAKNGLQGFKVTPTAPIRITFAKK 212
>gi|348581624|ref|XP_003476577.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cavia
porcellus]
Length = 224
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 157/237 (66%), Gaps = 16/237 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAMTAN 121
Query: 131 QA-GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G+ + A G P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQGI--STANTQGNVAPNPQVP------------DYPPNYILFLNNLPEETNEMMLS 167
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 168 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 224
>gi|417397429|gb|JAA45748.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 225
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAITAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGAPNSANTQGNATPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|354542538|ref|NP_001238897.1| U2 small nuclear ribonucleoprotein B'' [Canis lupus familiaris]
Length = 225
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + A+
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAS 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNAANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|116175273|ref|NP_001070696.1| uncharacterized protein LOC768116 [Sus scrofa]
gi|426240670|ref|XP_004014217.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Ovis
aries]
gi|115371759|gb|ABI96204.1| RU2B [Sus scrofa]
Length = 225
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 153/236 (64%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTVN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNATPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|403263452|ref|XP_003924046.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Saimiri
boliviensis boliviensis]
gi|197692169|dbj|BAG70048.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|197692419|dbj|BAG70173.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
Length = 225
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 153/236 (64%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+ +FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFAIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|351695324|gb|EHA98242.1| U2 small nuclear ribonucleoprotein B'' [Heterocephalus glaber]
Length = 224
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 156/237 (65%), Gaps = 16/237 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAN 121
Query: 131 QA-GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G++ T P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQGISTTNTQGNATTNP--QVP------------DYPPNYILFLNNLPEETNEMMLS 167
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 168 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 224
>gi|321460285|gb|EFX71329.1| sans fille-like protein [Daphnia pulex]
Length = 227
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 165/236 (69%), Gaps = 11/236 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN+TIYINNLNEKVK ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK+V S
Sbjct: 2 DVRPNSTIYINNLNEKVKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEVTS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SD+IAK GTF +ER + + +G+ +K + +
Sbjct: 62 ATNALRGMQGFPFYDKPMRIQYAKTDSDVIAKMKGTF--QERPAKPKPEGEPKKKKKKES 119
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ + P G++G P P GGA +PE PPN ILF+ N+P +T M L M
Sbjct: 120 KQQQVVTP---GSFGG-PATYGYPAIGGAG--VPE--QPPNQILFLTNLPEETNEMMLSM 171
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +SLQ KI + I++AKK
Sbjct: 172 LFTQFPGFKEVRLVPGRHDIAFVEFENEVQSAGARESLQGFKITPTHSMKISFAKK 227
>gi|12850013|dbj|BAB28565.1| unnamed protein product [Mus musculus]
Length = 225
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 153/236 (64%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNAANTQGTAAPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ + QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFEYDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|63592914|ref|XP_356179.3| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1 [Mus
musculus]
Length = 281
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 153/277 (55%), Gaps = 42/277 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYIN+LNEK+K D+LK+S +A+F QFG IL+IL ++LK +GQ++++FK+V+S
Sbjct: 5 ETRPNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ MQGFPFY KPM IQYAKT SDIIAK GTFV R+R++ + + K
Sbjct: 65 TINALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQEKPAVKKG 124
Query: 131 QAGMGLNPAYAGA--YGATPPLSQIP---------------------------------- 154
+G G P PP+ Q P
Sbjct: 125 CSGWGSAPVVGAVQPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIPSRAM 184
Query: 155 -----YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 PPQQLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGRHD 244
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
I FVE+ +E+QA A LQ KI Q + I++AKK
Sbjct: 245 IDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 281
>gi|443720886|gb|ELU10438.1| hypothetical protein CAPTEDRAFT_179768 [Capitella teleta]
Length = 218
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 154/247 (62%), Gaps = 42/247 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEK+K D+LK+SL A+F QFG I++I+A KTLK +GQA+++FKD++S
Sbjct: 2 DIRPNHTIYINNLNEKIKKDELKKSLFAIFSQFGHIIDIVALKTLKMRGQAFVIFKDISS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR-----------KRHEEK 119
AT A+ MQGFPFYDKPMRI Y+K SD IAK GTFV R ++ K+ + K
Sbjct: 62 ATNALRSMQGFPFYDKPMRINYSKKDSDAIAKMKGTFVERPKKKKKEDEEDAPVKKKKSK 121
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV 179
++R+ + A G +P+ PP++ILF+ N+
Sbjct: 122 AQRREAANAAANTG----------------------------GMPD--QPPHHILFLTNL 151
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQL 238
P +TT M L M F+QFPGF+EVR+V + IAFVE+ +E+QA A +LQ KI +
Sbjct: 152 PEETTEMMLSMLFNQFPGFREVRLVPGRHDIAFVEFENEVQAGAAKDALQGFKITPTNAM 211
Query: 239 LITYAKK 245
I++AKK
Sbjct: 212 KISFAKK 218
>gi|312372120|gb|EFR20150.1| hypothetical protein AND_20571 [Anopheles darlingi]
Length = 216
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 153/240 (63%), Gaps = 30/240 (12%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A+KTL+ +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVAYKTLRMRGQAFIIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE----KGKKRKDQ 126
AT A+ MQGFPFYDKPMRI Y+KT SD+IAK GTF R +R R + + KK K Q
Sbjct: 62 ATNAMRTMQGFPFYDKPMRINYSKTDSDMIAKLKGTFQERPKRVRQPKPVPTEEKKSKKQ 121
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
A + G N A A PPN ILF+ N+P +T M
Sbjct: 122 KAAGEVGATNNSA-------------------------TAEQPPNQILFLTNLPEETNEM 156
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
L M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + I++AKK
Sbjct: 157 MLSMLFNQFPGFKEVRLVPNRHDIAFVEFASEVQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|297706381|ref|XP_002830019.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pongo
abelii]
Length = 225
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 157/237 (66%), Gaps = 15/237 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKDQHDA 129
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ ++ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTS 121
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G P A G + P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQG-TPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|55732648|emb|CAH93023.1| hypothetical protein [Pongo abelii]
Length = 225
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 157/237 (66%), Gaps = 15/237 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKDQHDA 129
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E+++ ++ ++ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKREKKKAKTVEQTATTTS 121
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G G P A G + P Q+P PPN ILF+ N+P +T M L
Sbjct: 122 KKPGQG-TPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|291389004|ref|XP_002711008.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B''
[Oryctolagus cuniculus]
Length = 225
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 155/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAAAAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ + P A + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQVIPNSANNQANSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|119630691|gb|EAX10286.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_b
[Homo sapiens]
Length = 242
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 153/235 (65%), Gaps = 13/235 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>gi|426246411|ref|XP_004016988.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Ovis aries]
Length = 225
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 152/236 (64%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTVN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNATPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAGRDALQGFKITPSHAMKITYAKK 225
>gi|340368063|ref|XP_003382572.1| PREDICTED: hypothetical protein LOC100640859 [Amphimedon
queenslandica]
Length = 790
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 122/236 (51%), Positives = 155/236 (65%), Gaps = 21/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PNNTIYINNLNEKVK ++LK+SL+A+F QFG IL+I+A KTLK +GQA++VF+D+ S
Sbjct: 575 EYPPNNTIYINNLNEKVKKEELKKSLYAIFSQFGDILDIVALKTLKMRGQAFVVFRDIGS 634
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRI YAKTKSD IAK DG++V ++++K E + KK K
Sbjct: 635 ATNALRSMQGFPFYDKPMRIAYAKTKSDAIAKVDGSYVEKKKKKSEEARPKKAKQS---- 690
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
A A G+ S G S I PN ILF+ N+P +TT + L+M
Sbjct: 691 ----------ASAGGSNASGSTGGGGGNKGSSI------PNKILFISNLPPETTEVMLKM 734
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F QFPG +E+R+V ++ IAFVEY +E QAT AM SLQ KI + ITYA K
Sbjct: 735 LFEQFPGLQEIRLVPSRTDIAFVEYENESQATEAMSSLQDFKIVPTHPMKITYANK 790
>gi|300796380|ref|NP_001179481.1| U2 small nuclear ribonucleoprotein B'' [Bos taurus]
gi|426240672|ref|XP_004014218.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Ovis
aries]
gi|296481542|tpg|DAA23657.1| TPA: small nuclear ribonucleoprotein polypeptide B'' [Bos taurus]
Length = 218
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 152/236 (64%), Gaps = 20/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +EK K++K
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFA-------DKEKKKEKKKAKTVE 114
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q +N A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 115 QTATTVNKKPANTQGNATPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 162
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 163 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 218
>gi|392883960|gb|AFM90812.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 158/236 (66%), Gaps = 12/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K D+LK++L+++F QFG I++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTMKMRGQAFVIFKELCS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT+ + ++QGFPFY KPMRIQYAKT SD+ +K GTF ++ K+ E+K K ++Q AN
Sbjct: 62 ATSGLRQLQGFPFYGKPMRIQYAKTDSDVTSKMRGTFA--DKEKKKEKKRAKAQEQSAAN 119
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ M L A + S A +P+ PPN ILF+ N+P +T M L M
Sbjct: 120 KK-MNLGAAQPTTANSNQTTS------SANQQVPD--NPPNYILFLTNLPEETNEMMLSM 170
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E QA A +LQ +I + ITYAKK
Sbjct: 171 LFNQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFRITPSHAMKITYAKK 226
>gi|195995899|ref|XP_002107818.1| hypothetical protein TRIADDRAFT_18899 [Trichoplax adhaerens]
gi|190588594|gb|EDV28616.1| hypothetical protein TRIADDRAFT_18899 [Trichoplax adhaerens]
Length = 204
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 151/236 (63%), Gaps = 36/236 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+NNLNEKVK ++LK+SL+A+F QFG IL+I+A KTLK +GQA++VF+D++S
Sbjct: 4 DIPPNQTLYVNNLNEKVKKEELKKSLYAIFSQFGAILDIIAMKTLKMRGQAFVVFEDISS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFY+KPMRI Y K+KSD +AK DG++VPRE++ R + K
Sbjct: 64 ATNALRAMQGFPFYEKPMRITYCKSKSDAVAKKDGSYVPREKKVREKRK----------- 112
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
P +P+ G++ +P N ILF+ N+P +TT + L M
Sbjct: 113 ------------------PDEGMPHAAGSQEELP------NKILFLTNLPEETTELMLSM 148
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPG+KEVR+V + IAFVE+ E+QA A SL KI Q+ I +AKK
Sbjct: 149 LFNQFPGYKEVRLVPGRHDIAFVEFESEIQAATARNSLNGFKITPTHQMNIAFAKK 204
>gi|327260920|ref|XP_003215280.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Anolis
carolinensis]
Length = 224
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 154/236 (65%), Gaps = 14/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+YINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA++++K++ S
Sbjct: 2 DIRPNHTLYINNVNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIYKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SD+I+K GTF +E+R+ ++ + + A
Sbjct: 62 STNALRQLQGFPFYSKPMRIQYAKTDSDVISKMRGTFADKEKRREKKKTKSLEQSANAAK 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ G N A A Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KPNQGANQNSANT-QANSQNQQVP------------DNPPNYILFLNNLPEETNEMMLSM 168
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 169 LFNQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFKITPSHAMKITYAKK 224
>gi|17541324|ref|NP_500504.1| Protein RNP-2 [Caenorhabditis elegans]
gi|351064354|emb|CCD72715.1| Protein RNP-2 [Caenorhabditis elegans]
Length = 206
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 33/236 (13%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E++PN+T+YINNLNEK+KID+L++SL AVFKQFG I+ ++ F+TLK +GQA ++FK++ +
Sbjct: 3 EVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPA 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+AA E + GFPFY+KPMRIQ+A+ SD++A+ GT++ RE + E+ KK K + N
Sbjct: 63 ASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYLSEKILKKPKSRKKEN 122
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
GG + PAPPN ILF N+P T L++
Sbjct: 123 --------------------------GG------DGPAPPNKILFCTNLPDSATAEMLEI 150
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QF G K++RMV +PGIAFVE+ + A A +L + KI + + + YAKK
Sbjct: 151 MFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206
>gi|318065773|ref|NP_001187499.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
gi|308322301|gb|ADO28288.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus furcatus]
gi|308323171|gb|ADO28722.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
Length = 219
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 19/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLN++VK ++LK+SL+A+F QFG I+EI+A KT+K +GQA++VFK++A+
Sbjct: 2 DIRPNHTIYINNLNDRVKKEELKRSLYALFSQFGQIVEIVAMKTMKMRGQAFVVFKELAA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAKT SDI++K GT+ K +++ KK+ + AN
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSDIVSKMRGTY----GDKEKKKEKKKKAQEQAAN 117
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
A +N PP + + P PPN ILF+ N+P +T M L M
Sbjct: 118 AAKKPVN----AVNNQPPPPATVQVPDN----------PPNYILFLTNLPEETNEMMLSM 163
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F+QFPGFKEVR+V K IAFVE+ E QA VA +LQ +I + ITYAKK
Sbjct: 164 LFNQFPGFKEVRLVPGKHDIAFVEFEGEAQAGVAKDALQGFRITATCAMKITYAKK 219
>gi|149640848|ref|XP_001514376.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Ornithorhynchus anatinus]
gi|345329106|ref|XP_003431335.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like
[Ornithorhynchus anatinus]
Length = 225
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 15/237 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SD+I+K GTF +E++K ++ + + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDLISKMRGTFADKEKKKEKKKAKTVEQAANAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP-APPNNILFVQNVPHDTTPMALQ 189
+ P A P G + P+ P PPN ILF+ N+P +T M L
Sbjct: 122 K-----KPGQGAPNAANPQ--------GNAAQNPQVPDNPPNYILFLNNLPEETNEMMLS 168
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|432953888|ref|XP_004085464.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Oryzias latipes]
Length = 218
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 152/236 (64%), Gaps = 20/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYINN+N+KVK ++LK+SL+A+F QFG IL ++A KT++ +GQA++VFK++A+
Sbjct: 2 DIRPNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAKT S++IAK GTF +K KK++ + A
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTF---------GDKEKKKEKKKKAQ 112
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ A GA PP P PPN+ILF+ N+P +T M L M
Sbjct: 113 ELAANAAKKPAVRRGAVPPPLYRSVPDN----------PPNHILFLNNLPEETNEMMLSM 162
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F+QFPGFKEVR+V K IAFVE+ + QA VA +LQ +I + IT+AKK
Sbjct: 163 LFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 218
>gi|341897441|gb|EGT53376.1| CBN-RNP-2 protein [Caenorhabditis brenneri]
Length = 206
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 150/236 (63%), Gaps = 33/236 (13%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E++PN+T+YINNLNEK+KI++L++SL AVFKQFG I+ ++ F+TL+ +GQA ++F D+++
Sbjct: 3 ELAPNSTLYINNLNEKIKIEELRKSLIAVFKQFGEIVSVMCFRTLRMRGQAHVIFTDISA 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+AA E + GFPFY+KPM+IQ+A+ +DIIAK GT++ R+ + E+ KK + + N
Sbjct: 63 ASAAKEALTGFPFYEKPMKIQFAREDADIIAKQKGTYMDRQPKYLSEKIQKKPRSKKREN 122
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
GG E PAPPN ILF N+P + T L++
Sbjct: 123 --------------------------GG------EGPAPPNKILFCTNLPDNATAEMLEI 150
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPG K++RMV +PGIAFVE+ + A A +L + +I + ++ + YAKK
Sbjct: 151 MFNQFPGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMRVDYAKK 206
>gi|348538124|ref|XP_003456542.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Oreochromis
niloticus]
Length = 218
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%), Gaps = 20/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++A+
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGQVIDIVAMKTMKMRGQAFVIFKELAA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAKT S++IAK G++ +E++K+ ++K ++
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKVKGSYGDKEKKKKEKKKAQEL------- 114
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
A PA A A P Q+P PPN ILF+ N+P +T M L M
Sbjct: 115 AANATKKPAAGLAPPALTPAVQVP------------DNPPNYILFLSNLPEETNEMMLSM 162
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F+QFPGFKEVR+V K IAFVE+ + QA VA +LQ +I + ITYAKK
Sbjct: 163 LFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITYAKK 218
>gi|309266585|ref|XP_003086803.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 282
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 159/279 (56%), Gaps = 45/279 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYIN+LNEK+K D+LK+S +A+F QFG IL+IL ++LK +GQ++++FK+V+S
Sbjct: 5 ETRPNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE-RRKRHEEKGKKRKDQHDA 129
A+ MQGFPFY KPM IQYAKT SDIIAK GTFV R+ +R++ + K +++ A
Sbjct: 65 TINALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDHKREKRKPKSQEKPAAKKA 124
Query: 130 NQAG----------------------------MGLNPAYAGAYG-----ATPPLSQIP-- 154
Q G M P Y G PP QIP
Sbjct: 125 VQGGAAAPVVGAVQPPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPP-GQIPSR 183
Query: 155 -------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 184 AMPPQQLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
I FVE+ +E+QA A LQ KI Q + I++AKK
Sbjct: 244 HDIDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 282
>gi|91078752|ref|XP_968271.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A
[Tribolium castaneum]
gi|270003743|gb|EFA00191.1| hypothetical protein TcasGA2_TC003016 [Tribolium castaneum]
Length = 214
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 156/241 (64%), Gaps = 34/241 (14%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PNNTIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DIRPNNTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIQS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR-----HEEKGKKRKD 125
+T A+ MQGFPFYDKPMRIQYAKT SD+I+K GTF R ++ R +E KK+K
Sbjct: 62 STNALRSMQGFPFYDKPMRIQYAKTDSDVISKMKGTFQERPKKIRPPPSKEDEAPKKKKK 121
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
D N+ PGG+ A PPN ILF+ N+P +T+
Sbjct: 122 NKDPNR-----------------------IPGGS-----NAEQPPNQILFLTNLPDETSE 153
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
M L M F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ KI + I++AK
Sbjct: 154 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENELQSGAAKDALQGFKITPTHAMKISFAK 213
Query: 245 K 245
K
Sbjct: 214 K 214
>gi|327276255|ref|XP_003222885.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Anolis
carolinensis]
Length = 280
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/276 (41%), Positives = 155/276 (56%), Gaps = 41/276 (14%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D S+ + G IL+IL ++K +GQA+++FK+V+S
Sbjct: 5 ESRPNHTIYINNLNEKIKKDGKFISVSMLLNPSGQILDILVSHSMKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
+T A+ MQGFPFYDKPMRIQYAK SDIIAK GT+V R+R R++ + KG++
Sbjct: 65 STNALRSMQGFPFYDKPMRIQYAKMDSDIIAKMKGTYVERDRKREKRKPKGQEAPAVKKQ 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIP----------------------------------- 154
+ PA GA PP++Q P
Sbjct: 125 IPGAAPVAPAVQGAVPGMPPMNQGPRMMHHMPGQPPYMPPPGMMPPPGMAPGSIPPGAMP 184
Query: 155 ----YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI 210
PG V P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + I
Sbjct: 185 PQQMLPGQMAPVQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 244
Query: 211 AFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
AFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 245 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 280
>gi|308457664|ref|XP_003091202.1| CRE-RNP-2 protein [Caenorhabditis remanei]
gi|308257956|gb|EFP01909.1| CRE-RNP-2 protein [Caenorhabditis remanei]
Length = 206
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 144/236 (61%), Gaps = 33/236 (13%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
EI PN+T+YINNLNEK+KID+L++SL AVFKQFG I+ ++ F+TLK +GQA ++F DV+S
Sbjct: 3 EIQPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFTDVSS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A AA E + GFPFY+KPM+IQ+A+ +SD IAK GT+V R+
Sbjct: 63 AAAAKEALTGFPFYEKPMKIQFAREESDAIAKEKGTYVERQ------------------- 103
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
P Y P S+ GG E PAPPN ILF N+P + T L++
Sbjct: 104 -------PKYLSEKIQKKPKSKKRENGG------EGPAPPNKILFCTNLPDNATAEMLEI 150
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QF G K++RMV +PGIAFVE+ + A A +L + +I + ++ + YAKK
Sbjct: 151 MFNQFSGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMRVDYAKK 206
>gi|387914214|gb|AFK10716.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392878676|gb|AFM88170.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884228|gb|AFM90946.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884422|gb|AFM91043.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884424|gb|AFM91044.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 153/236 (64%), Gaps = 12/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K D+LK++L+++F QFG I++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTMKMRGQAFVIFKELCS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT+ + ++QGFPFY KPMRIQYAKT SD+ +K GTF +E++K ++ + + +
Sbjct: 62 ATSGLRQLQGFPFYGKPMRIQYAKTDSDVTSKMRGTFADKEKKKEKKKAKAQEQSAANKK 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
P A + T A +P+ PPN ILF+ N+P +T M L M
Sbjct: 122 MNLGAAQPTTANSNQTT---------SSANQQVPD--NPPNYILFLTNLPEETNEMMLSM 170
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E QA A +LQ +I + ITYAKK
Sbjct: 171 LFNQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFRITPSHAMKITYAKK 226
>gi|225707030|gb|ACO09361.1| U2 small nuclear ribonucleoprotein B [Osmerus mordax]
Length = 219
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 162/236 (68%), Gaps = 19/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K D+LK+SL+A+F QFG I++I+A KT+K +GQA++VFK++A+
Sbjct: 2 DIRPNHTIYINNVNDKIKKDELKRSLYALFSQFGQIVDIVAMKTIKMRGQAFVVFKELAA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY+KPMRIQYAKT S++I+K GT+ +E++K ++K +++
Sbjct: 62 STNALRQLQGFPFYNKPMRIQYAKTDSEVISKMRGTYSDKEKKKEKKKKAQEQ------- 114
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
A + PA T P +Q+ + +P+ PPN ILF+ N+P +T M L M
Sbjct: 115 VANVTKKPALG---SNTQPNTQV------TTQVPD--NPPNYILFLNNLPEETNEMMLSM 163
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F+QFPGFKEVR+V K I+FVE+ E +A VA +LQ +I + ITY+KK
Sbjct: 164 LFNQFPGFKEVRLVPGKHDISFVEFESEARAGVAKDALQGFRITATCAMKITYSKK 219
>gi|410917616|ref|XP_003972282.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Takifugu rubripes]
Length = 246
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 155/236 (65%), Gaps = 19/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+KVK ++LK+SL+A+ QFG I++I+A KT+K +GQA+++FK++ +
Sbjct: 29 DIRPNHTIYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTA 88
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAKT S++IAK GT+ K ++K KK+ + AN
Sbjct: 89 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTY----GDKEKKKKEKKKPQELPAN 144
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q A +PP Q+P PPN ILF+ N+P +T M L M
Sbjct: 145 QTKKA--AAVVSESHRSPPTGQVP------------DNPPNYILFLTNLPEETNEMMLSM 190
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F+QFPGFKEVR+V K I+FVE+ ++QA VA +LQ +I + ITYAKK
Sbjct: 191 LFNQFPGFKEVRLVPGKHDISFVEFESDVQAGVAKDALQGFRITATCAMKITYAKK 246
>gi|260827881|ref|XP_002608892.1| hypothetical protein BRAFLDRAFT_124249 [Branchiostoma floridae]
gi|229294246|gb|EEN64902.1| hypothetical protein BRAFLDRAFT_124249 [Branchiostoma floridae]
Length = 256
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 122/255 (47%), Positives = 161/255 (63%), Gaps = 20/255 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN+TIYINNLNEKVK ++LK+SL+A+F QFG I++I+A KTLK +GQA+++FKD+ S
Sbjct: 2 ELRPNHTIYINNLNEKVKKEELKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKDINS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRI Y+KT SD IAK GT+V R++++R E+ KK + A
Sbjct: 62 ATQALRSMQGFPFYDKPMRIAYSKTDSDAIAKMKGTYVERKKKERQEKVPKKPAPRPQAA 121
Query: 131 QAGMGLNPAYAGAY--------------GATPPLSQIP---YPGGA--KSVIPEAPAPPN 171
G P + Q P PG A P+A PPN
Sbjct: 122 APAQIPPQQQQRMQQQPPPMMQQQMAPGGPAPGMGQPPQQMMPGMAQPSQPQPQAEQPPN 181
Query: 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL 231
NILF+ N+P +TT M L M F+QFPGFKEVR+V + IAFVE+ +EMQ+ A +LQ
Sbjct: 182 NILFLTNLPEETTEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEMQSGAARDALQGF 241
Query: 232 KIGQQQLL-ITYAKK 245
KI + I++AKK
Sbjct: 242 KITPTHAMKISFAKK 256
>gi|312069861|ref|XP_003137879.1| hypothetical protein LOAG_02293 [Loa loa]
Length = 223
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 155/241 (64%), Gaps = 25/241 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN+TIYINNLNEK K ++LK++L+A+F QFG I++I+AFKTLK +GQA ++FK+++S
Sbjct: 2 DVKPNHTIYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH----EEKGKKR-KD 125
AT A+ MQGFPFYDKPMRIQ+A+ SD+IAKA GT+V +R K+H + G+KR K
Sbjct: 62 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYV--DRPKKHLLAKQAAGEKRKKT 119
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
H M ++ GA G K+ +PE PPN ILF N+P +TT
Sbjct: 120 NHVKESKKMRID---KGATG--------------KTELPEKANPPNKILFCTNLPEETTE 162
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244
L + F+ +PG K++R + +P IAFVE+ E +AT A L + KI Q + + YA
Sbjct: 163 QMLSLLFNPYPGLKDIRRIPNRPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYAN 222
Query: 245 K 245
K
Sbjct: 223 K 223
>gi|268553733|ref|XP_002634853.1| C. briggsae CBR-RNP-2 protein [Caenorhabditis briggsae]
Length = 206
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 143/236 (60%), Gaps = 33/236 (13%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
EI PN+T+YINNLNEK+KID+L++SL AVFKQFG IL+++ F+TLK +GQA ++F ++
Sbjct: 3 EIQPNSTLYINNLNEKIKIDELRKSLFAVFKQFGEILDVMCFRTLKMRGQAHIIFAEIPH 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
ATAA E + GFPFY+KPM+IQ+A+ +D IAK GT+V R+
Sbjct: 63 ATAAKEALSGFPFYEKPMKIQFAREDADRIAKEKGTYVERK------------------- 103
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
P Y P S+ GG E PAPPN ILF N+P T L++
Sbjct: 104 -------PKYMSEKVQKKPKSKKRDAGG------EGPAPPNKILFCTNLPDSATAEMLEI 150
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPG K++RMV +PGIAFVE+ + A A +L + +I + ++ + YAKK
Sbjct: 151 MFNQFPGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMRVDYAKK 206
>gi|328869164|gb|EGG17542.1| U2 small nuclear ribonucleoprotein B [Dictyostelium fasciculatum]
Length = 241
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 147/234 (62%), Gaps = 17/234 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIY+NN+NEK+ +LK+ L+ +F ++GTILEI++ K K KGQA++VF+D+ +
Sbjct: 22 DILPNQTIYVNNINEKLSQKKLKEQLYGLFSKYGTILEIISSKRQKMKGQAFIVFQDITA 81
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ +M GF F+D+ + +QY+K KSD ++K DGT+V ++R + E++ +K K Q +
Sbjct: 82 ASNALREMNGFSFFDRNINVQYSKNKSDAVSKLDGTYVEKKRERETEQEKRKAKKQDNKK 141
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ + G P APPN ILFV+N+P + M +QM
Sbjct: 142 STKQSKTTSTSTPSGNVAP----------------REAPPNRILFVENLPDNCQEMMIQM 185
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYA 243
FSQFPGF+ V M A+ G+AFVEY D++++ +AM LQ K+ + ++I++A
Sbjct: 186 LFSQFPGFQSVNMTTARKGVAFVEYDDDIKSGLAMSHLQGFKVTSDRPMVISFA 239
>gi|393909446|gb|EFO26195.2| hypothetical protein LOAG_02293 [Loa loa]
Length = 254
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 151/239 (63%), Gaps = 21/239 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN+TIYINNLNEK K ++LK++L+A+F QFG I++I+AFKTLK +GQA ++FK+++S
Sbjct: 33 DVKPNHTIYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISS 92
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG---KKRKDQH 127
AT A+ MQGFPFYDKPMRIQ+A+ SD+IAKA GT+V R ++ ++ K++K H
Sbjct: 93 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYVDRPKKHLLAKQAAGEKRKKTNH 152
Query: 128 DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
M ++ G K+ +PE PPN ILF N+P +TT
Sbjct: 153 VKESKKMRIDKGATG-----------------KTELPEKANPPNKILFCTNLPEETTEQM 195
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
L + F+ +PG K++R + +P IAFVE+ E +AT A L + KI Q + + YA K
Sbjct: 196 LSLLFNPYPGLKDIRRIPNRPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYANK 254
>gi|156402885|ref|XP_001639820.1| predicted protein [Nematostella vectensis]
gi|156226951|gb|EDO47757.1| predicted protein [Nematostella vectensis]
Length = 209
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 154/234 (65%), Gaps = 31/234 (13%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN TIYI NLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA++VFKD+ SAT
Sbjct: 5 PNQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATN 64
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ MQGFPFYDKPMRIQYAK KSD +AKA+GTFVPRE++ + + K
Sbjct: 65 ALRSMQGFPFYDKPMRIQYAKGKSDAVAKAEGTFVPREKKPKEKRKA------------- 111
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIP-EAPAPPNNILFVQNVPHDTTPMALQMFF 192
P AGA P A IP + P PNNILF+ N+P +TT + L M F
Sbjct: 112 ----PENAGA------------PIAAPMAIPTQQPDLPNNILFLTNLPMETTELMLSMLF 155
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+QFPGFKEVR+V + I+FVE+ +E+QA A +LQ +I + I+YAKK
Sbjct: 156 NQFPGFKEVRLVPGRSDISFVEFENEVQAGTAKDALQGFRITPTNAMSISYAKK 209
>gi|148689095|gb|EDL21042.1| mCG15722 [Mus musculus]
Length = 281
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 153/281 (54%), Gaps = 50/281 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYIN+LNEK+K D+LK+S +A+F QFG IL+IL ++LK +GQ++++FK+V+S
Sbjct: 5 ETRPNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ MQGFPFY KPM IQYAKT SDIIAK GTFV R+ H+ + +K K Q
Sbjct: 65 TINALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERD----HKREKRKPKSQEKPA 120
Query: 131 QAGMGLNPAYAGAYGAT------PPLSQIP------------------------------ 154
A GA PP+ Q P
Sbjct: 121 AKKRLFRWGSAPVVGAVQPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIP 180
Query: 155 ---------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 181 SRAMPPQQLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVP 240
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ I FVE+ +E+QA A LQ KI Q + I++AKK
Sbjct: 241 GRHDIDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 281
>gi|371874989|ref|NP_001243119.1| U2 small nuclear ribonucleoprotein B'' [Danio rerio]
Length = 220
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 18/236 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG I++I+A KT++ +GQA+++FK++++
Sbjct: 2 DIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAKT SD+++K GT+ +++ KK K +
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTY--------GDKEKKKEKKKKAQE 113
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
QA N AGA P P A IP+ PPN ILF+ N+P +T M L M
Sbjct: 114 QAAANANKKPAGAVNTQP-------PPPATVQIPD--NPPNYILFLNNLPEETNEMMLSM 164
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F+QFPGFKEVR+V K I+FVE+ E QA VA +LQ +I + ITYAKK
Sbjct: 165 LFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220
>gi|170588483|ref|XP_001899003.1| U1 small nuclear ribonucleoprotein A [Brugia malayi]
gi|158593216|gb|EDP31811.1| U1 small nuclear ribonucleoprotein A, putative [Brugia malayi]
Length = 233
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 153/241 (63%), Gaps = 25/241 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN+TIYINNLNEK K ++LK++L+A+F QFG I++I+AFKTLK +GQA ++FK+++S
Sbjct: 12 DVKPNHTIYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISS 71
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH----EEKGKKR-KD 125
AT A+ MQGFPFYDKPMRIQ+A+ SD+IAKA GT++ +R K+H + G+KR K
Sbjct: 72 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYI--DRPKKHLLAKQAAGEKRKKT 129
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
H M ++ G K+ +PE PPN ILF N+P +TT
Sbjct: 130 SHVKENKKMRMDKIATG-----------------KTELPEKANPPNKILFCTNLPEETTE 172
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244
L + F+ +PG K++R + +P IAFVE+ E +AT A L + KI Q + + YA
Sbjct: 173 QMLSLLFNPYPGLKDIRRIPNRPDIAFVEFETEAEATSARSGLNNFKITPSQSMYVNYAN 232
Query: 245 K 245
K
Sbjct: 233 K 233
>gi|47211375|emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis]
Length = 218
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 158/236 (66%), Gaps = 20/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+KVK ++LK+SL+A+ QFG I++I+A KT+K +GQA+++FK++ +
Sbjct: 2 DIRPNHTIYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAKT S++IAK GT+ +E++K+ ++K + + AN
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTYGDKEKKKKEKKKAQ----ELPAN 117
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q A A P +Q+P PPN ILF+ N+P +T M L M
Sbjct: 118 QMKKA---AVVPAVPLHSPAAQVP------------DNPPNYILFLTNLPEETNEMMLSM 162
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F+QFPGFKEVR+V K IAFVE+ ++QA VA +LQ +I + IT+AKK
Sbjct: 163 LFNQFPGFKEVRLVPGKHDIAFVEFESDLQAGVAKDALQGFRITATCAMKITFAKK 218
>gi|390333482|ref|XP_789234.3| PREDICTED: U1 small nuclear ribonucleoprotein A-like
[Strongylocentrotus purpuratus]
Length = 235
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 148/246 (60%), Gaps = 41/246 (16%)
Query: 29 IDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88
I +LK+SL+A+F QFG IL+I+A KTLK +GQA+++F+D+ SAT+A+ MQGFPFYDKPM
Sbjct: 2 IPKLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFRDITSATSALRSMQGFPFYDKPM 61
Query: 89 RIQYAKTKSDIIAKADGTFVPRERR---KRHEEKGKKRKDQHDANQAGMGLNPAYAGAYG 145
RI Y KTKSD IAK GT+VPRE+R K+ EE K RK++ + + A
Sbjct: 62 RIGYCKTKSDAIAKMQGTYVPREKRVEKKKVEEPVKGRKNRQNRH------------ADV 109
Query: 146 ATPPLSQIPYP--------------------GGAKSVIPEAPAP-----PNNILFVQNVP 180
PP SQIP P G +P APAP PNNILF+ N+P
Sbjct: 110 VIPPPSQIPMPGAPPAANQPPPLLGEMPMQMGQPPIQVPTAPAPVVPDEPNNILFLTNLP 169
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL- 239
+T + L++ F QF G+KEVR+V + IAFVE+ +E Q+ A +LQ KI L
Sbjct: 170 EETNELMLEVLFKQFNGYKEVRLVPGRHDIAFVEFANEQQSGTAKDALQGFKITPTNTLK 229
Query: 240 ITYAKK 245
I YAKK
Sbjct: 230 IAYAKK 235
>gi|402584435|gb|EJW78376.1| U1 small nuclear ribonucleoprotein A [Wuchereria bancrofti]
Length = 241
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 151/239 (63%), Gaps = 21/239 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN+TIYINNLNEK K ++LK++L+A+F QFG I++I+AFKTLK +GQA ++FK+++S
Sbjct: 20 DVKPNHTIYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISS 79
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG---KKRKDQH 127
AT A+ MQGFPFYDKPMRIQ+A+ SD+IAKA GT++ R ++ ++ K++K H
Sbjct: 80 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYIDRPKKHLLAKQAAGEKRKKTSH 139
Query: 128 DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
M ++ G K+ +PE PPN ILF N+P +TT
Sbjct: 140 VKENKKMRMDKIATG-----------------KTELPEKANPPNKILFCTNLPEETTEQM 182
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
L + F+ +PG K++R + +P IAFVE+ E +AT A L + KI Q + + YA K
Sbjct: 183 LSLLFNPYPGLKDIRRIPNRPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYANK 241
>gi|126303676|ref|XP_001374230.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like isoform 1
[Monodelphis domestica]
Length = 225
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 153/236 (64%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SD+I+K GTF +E++K ++ + + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDVISKMRGTFADKEKKKEKKKAKSLEQTANAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQATPNSANTQGNSTQNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+Q+P FKEVR+ + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQYPVFKEVRLGPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|37748043|gb|AAH59527.1| Snrpb2 protein [Danio rerio]
Length = 229
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 18/236 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG I++I+A KT++ +GQA+++FK++++
Sbjct: 11 DIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSA 70
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAKT SD+++K GT+ +++ KK K +
Sbjct: 71 ATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTY--------GDKEKKKEKKKKAQE 122
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
QA N AGA P P A IP+ PPN ILF+ N+P +T M L M
Sbjct: 123 QAAANANKKPAGAVNTQP-------PPPATVQIPD--NPPNYILFLNNLPEETNEMMLSM 173
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F+QFPGFKEVR+V K I+FVE+ E QA VA +LQ +I + ITYAKK
Sbjct: 174 LFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 229
>gi|145323766|ref|NP_001077472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189939|gb|AEE28060.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 200
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 145/206 (70%), Gaps = 12/206 (5%)
Query: 41 KQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDII 100
K+FG +L+++A KT K +GQAW+VF +V +A+ AV +MQ FPFYDKPMRIQYAK+KSD +
Sbjct: 6 KKFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYV 65
Query: 101 AKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAK 160
KA+G+FVP+E++ + EEK ++++ + Q M N A PP P G
Sbjct: 66 TKAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMP-NGATTQNGMPVPPFQ----PSGQD 120
Query: 161 SVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQ 220
++ PPNNILF+ N+P +T M LQ+ F Q+PGFKE+RM+EAKPGIAFVEY D++Q
Sbjct: 121 TM------PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQ 174
Query: 221 ATVAMQSLQSLKIG-QQQLLITYAKK 245
+++AMQ+LQ KI Q +++++AKK
Sbjct: 175 SSMAMQALQGFKITPQNPMVVSFAKK 200
>gi|17541322|ref|NP_500505.1| Protein RNP-3 [Caenorhabditis elegans]
gi|351064353|emb|CCD72714.1| Protein RNP-3 [Caenorhabditis elegans]
Length = 217
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 146/236 (61%), Gaps = 22/236 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I+PN+TIY+NNLNEKVK D+LK+SLH VF QFG I+++++F+ K +GQA +VFK+V+S
Sbjct: 3 DINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ +QGFPFY KPMRIQYA+ SD+I++A GTFV E+R++ + KK ++
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFV--EKRQKSTKIAKKPYEK---- 116
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
PA G A P + G P PNNILF N+P T P +Q
Sbjct: 117 -------PAKNGKSAAEPTQKEPQETDG--------PGLPNNILFCSNIPEGTEPEQIQT 161
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
FSQFPG +EVR + AF+EY E + A Q+L + +I QQ+ + +A K
Sbjct: 162 IFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217
>gi|344298221|ref|XP_003420792.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Loxodonta
africana]
Length = 200
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 145/238 (60%), Gaps = 45/238 (18%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R KR + K K ++
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDR-KREKRKPKSQE------ 117
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPHDTTPMAL 188
TP + G A SV+ + P PP +
Sbjct: 118 ----------------TPAAKKAVQGGAAASVVGAVQGPVPPRGL--------------- 146
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
++FPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 147 ----ARFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQSNAMKISFAKK 200
>gi|432953883|ref|XP_004085463.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Oryzias latipes]
Length = 217
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 150/237 (63%), Gaps = 23/237 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYINN+N+KVK ++LK+SL+A+F QFG IL ++A KT++ +GQA++VFK++A+
Sbjct: 2 DIRPNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAKT S++IAK GTF D
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTF-------------------GDKE 102
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSV-IPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ A A A + PG ++ +P+ PPN+ILF+ N+P +T M L
Sbjct: 103 KKKEKKKKAQELAANAAKKPAAAAVPGLTLALQVPD--NPPNHILFLNNLPEETNEMMLS 160
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
M F+QFPGFKEVR+V K IAFVE+ + QA VA +LQ +I + IT+AKK
Sbjct: 161 MLFNQFPGFKEVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 217
>gi|149263421|ref|XP_995150.2| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/281 (41%), Positives = 155/281 (55%), Gaps = 50/281 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQ +++FK+V
Sbjct: 8 ETRSNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTI 67
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ M GFPFYDKPMRIQY KT+SD IAK GTFV ER + E++ K ++ A
Sbjct: 68 ATNALWSMLGFPFYDKPMRIQYTKTESDNIAKMKGTFV--ERDHKGEKRKPKSQETPAAK 125
Query: 131 QAGMGLNPAYAGAYGAT--------------------------PPLSQIPYPGGAKSVIP 164
+A G A A GA PP IP G A IP
Sbjct: 126 KAVQGG--AAAPVVGAVQPVPGMPPMPQAPRIMHHVPGQPPYMPPAGMIPPTGLAPGQIP 183
Query: 165 EAPA-------------------PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PPN+ILF+ N+P +T + L M F+QFPGFKE +V
Sbjct: 184 PGAMPPQQLMPGQMPPAPPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEAHLVP 243
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A+ +LQ KI Q + I++ KK
Sbjct: 244 GCHDIAFVEFDNEVQAGAALDALQGFKITQNNAMKISFVKK 284
>gi|47028317|gb|AAT09091.1| small nuclear ribonucleoprotein [Bigelowiella natans]
Length = 227
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 140/241 (58%), Gaps = 27/241 (11%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ PN TIYI NLNEK+K D+L+ +L+ F QFG ILE+ A K +GQAW+VF D++ A
Sbjct: 7 VRPNQTIYIQNLNEKLKRDELRINLYHAFSQFGNILEVFASKKGNKRGQAWIVFDDLSGA 66
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
T +V MQ F+ K MR+ YAK KSDII+K DG++VPRE+RK N
Sbjct: 67 TKSVRGMQNVDFFGKKMRLSYAKEKSDIISKRDGSYVPREKRK--------------MNS 112
Query: 132 AGMGLNP------AYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
M + P A A A G P + P E +PPN ILF +N+P T
Sbjct: 113 GDMKIEPKVQKTTAVATAKGEGAPAMETDEPE------EEDSSPPNKILFARNLPPQATK 166
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
L+ F Q+ GFKEVR+V+ KP IAF+E+ D ++ +A + LQ+ KI Q + +T+AK
Sbjct: 167 KMLETLFKQYDGFKEVRLVDGKPDIAFIEFNDAQESALAKEGLQNFKITSQNAMKLTFAK 226
Query: 245 K 245
+
Sbjct: 227 Q 227
>gi|66806007|ref|XP_636725.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
gi|74996697|sp|Q54J05.1|RU2B_DICDI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|60465122|gb|EAL63221.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
Length = 241
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 150/244 (61%), Gaps = 6/244 (2%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
ME E A +I PN T+Y+NNL EK+ +L + L +F ++G ILEI+ K+LK +GQ
Sbjct: 1 METESA----DIPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQ 56
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG 120
A++VFKD+ SA+ A+ +M GF F D+PM+IQY K+KSD ++K DGT++ ++R + +K
Sbjct: 57 AFIVFKDITSASNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKK 116
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
K Q + GA +T + G S+ P PPN LFV+N+P
Sbjct: 117 GSNKKQDRKSTGQQQQQQKRPGAPTSTTSTTSPTTSNGTVSLQPR-DDPPNKTLFVENLP 175
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLL 239
M L M FSQF GFKEV MVE+K GIAF+E+ DE+++ AM +LQ K+ ++ ++
Sbjct: 176 DKCDSMMLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMV 235
Query: 240 ITYA 243
+++A
Sbjct: 236 VSFA 239
>gi|170070159|ref|XP_001869484.1| U1 small nuclear ribonucleoprotein A [Culex quinquefasciatus]
gi|167866053|gb|EDS29436.1| U1 small nuclear ribonucleoprotein A [Culex quinquefasciatus]
Length = 216
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 152/236 (64%), Gaps = 22/236 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+YINNLNEK+K ++LK+SL+A+F QFG I++I+A KTLK +GQA+++FK++ S
Sbjct: 2 DIRPNHTVYINNLNEKIKKEELKKSLYAIFSQFGQIMDIVALKTLKMRGQAFIIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRI Y+K+ SD+IAK GTF +ER K K + K H
Sbjct: 62 ATNAMRTMQGFPFYDKPMRINYSKSDSDVIAKLKGTF--KERPK----KARVPKPAHQEE 115
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ A +G+ A + A PPN ILF+ N+P +T M L M
Sbjct: 116 KKSKKQKNADSGS---------------AANNSATAEQPPNQILFLTNLPEETNEMMLSM 160
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + I++AKK
Sbjct: 161 LFNQFPGFKEVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|377835922|ref|XP_003688944.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 156/281 (55%), Gaps = 50/281 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQ +++FK+V
Sbjct: 8 ETRSNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTI 67
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ M GFPFYDKPMRIQYAKT SDIIAK GTFV ER + E++ K ++ A
Sbjct: 68 ATNALRSMLGFPFYDKPMRIQYAKTDSDIIAKMKGTFV--ERDYKGEKRKPKSQETPAAK 125
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP--------------------------YPGGAKSVIP 164
+A G A A GA P+ +P G A IP
Sbjct: 126 KAVQG--GAAAPVVGAVQPVPGMPRMPQAPRIMHHVPGQPPYMPPPGIIPPTGLAPGQIP 183
Query: 165 EAPA-------------------PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PPN+ILF+ N+P +T + L M F+QF GFKE +V
Sbjct: 184 PGAMPPQQLMPGQMPPAPPLSENPPNHILFLTNLPEETNELMLSMLFTQFRGFKEAGLVP 243
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A+ +LQ KI Q + I++ KK
Sbjct: 244 GRLDIAFVEFDNEVQAGAALDALQGFKITQNNAMKISFVKK 284
>gi|157103841|ref|XP_001648152.1| U1 small nuclear ribonucleoprotein A [Aedes aegypti]
gi|157133359|ref|XP_001656219.1| U1 small nuclear ribonucleoprotein A [Aedes aegypti]
gi|108869334|gb|EAT33559.1| AAEL014167-PA [Aedes aegypti]
gi|108881556|gb|EAT45781.1| AAEL002980-PA [Aedes aegypti]
Length = 216
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 153/241 (63%), Gaps = 32/241 (13%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I P++TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++AS
Sbjct: 2 DIRPSHTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFIIFKEIAS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR-----HEEKGKKRKD 125
AT A+ MQGFPFYDKPMRI Y+KT SD+IAK GTF R ++ + H+E K +K
Sbjct: 62 ATNAMRTMQGFPFYDKPMRINYSKTDSDVIAKMKGTFKERPKKAKAPKPIHQEDKKSKKQ 121
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
++ A A + A PPN ILF+ N+P +T
Sbjct: 122 KNAEAGA--------------------------AANNSATAEQPPNQILFLTNLPEETNE 155
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244
M L M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + I++AK
Sbjct: 156 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAK 215
Query: 245 K 245
K
Sbjct: 216 K 216
>gi|452823467|gb|EME30477.1| U2 small nuclear ribonucleoprotein B'' [Galdieria sulphuraria]
Length = 250
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 144/239 (60%), Gaps = 21/239 (8%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
Q ++ PN TIYI NL+EKVK +L+QSL+ F QFG I++++A KT + +GQA++ F+D
Sbjct: 32 QSVDVPPNQTIYIRNLDEKVKKQELRQSLYEAFSQFGRIVDVVALKTTRMRGQAFIAFED 91
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQH 127
+ASAT A+ +QGF FY+KPM IQYAK KS+ +AK DGTFV R RK ++ + K
Sbjct: 92 IASATNALRGLQGFLFYNKPMVIQYAKAKSEKVAKLDGTFVRRSERKPDQDASVEPK--- 148
Query: 128 DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
+ + +TP LS K + PN++LF+ +P D +
Sbjct: 149 ---------SDSLKRKRTSTPVLS--------KDLDTLQVGEPNHVLFIAGIPQDCSLQQ 191
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAKK 245
L+ F QFPG+KE R+ + +AFVE+ E QATVA+Q +Q +I + QL I YAKK
Sbjct: 192 LESLFVQFPGYKETRLAAGQERVAFVEFETEDQATVALQGMQGFRISETSQLSIVYAKK 250
>gi|449679798|ref|XP_002163097.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Hydra
magnipapillata]
Length = 219
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 151/236 (63%), Gaps = 19/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYINNLNEKVK ++LK++L+A+F QFG+IL+++A KTLK +GQA++VFKD+ S
Sbjct: 2 DIPPNQTIYINNLNEKVKKEELKKALYAIFTQFGSILDVVAMKTLKMRGQAFVVFKDIPS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRI Y ++KSD +AK + TFVPR+++ + + K+K
Sbjct: 62 ATNALRSMQGFPFYDKPMRIAYCRSKSDAVAKLENTFVPRDKKLKRKVDETKKKPAKQLR 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q+ P+ PG + +PE PN ILF+ +P +TT + L M
Sbjct: 122 QSV---------------PIIPQSMPGHMQMQMPEI---PNQILFLSELPDETTEIMLAM 163
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F QF G+KEVR+V + IAFVE+ + +A +A +L KI + IT+A+K
Sbjct: 164 LFQQFDGYKEVRLVPGRHDIAFVEFEEAEKARIAKDTLNGFKITPTHAMKITFARK 219
>gi|147902061|ref|NP_001088194.1| small nuclear ribonucleoprotein polypeptide B [Xenopus laevis]
gi|54035240|gb|AAH84107.1| LOC495019 protein [Xenopus laevis]
Length = 223
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 153/237 (64%), Gaps = 17/237 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+YINNL +KVK +LK+SL+A+F QFG +++I+A KT+K +GQ +++FK+++S
Sbjct: 2 DIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQGFVIFKELSS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY KPMRIQYAKT SD++ K GTF +E++K ++ + + +
Sbjct: 62 ATNALRQLQGFPFYSKPMRIQYAKTDSDVVLKMKGTFADKEKKKEKKKAKAQEQAAN--- 118
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP-APPNNILFVQNVPHDTTPMALQ 189
A P + +P + S P+ P PPN ILF+ N+P +T M L
Sbjct: 119 --------AANKKPALAPNANNVP----SASQNPQVPDNPPNYILFLNNLPEETNEMMLS 166
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ +E +A A +LQ KI + IT+AKK
Sbjct: 167 MLFNQFPGFKEVRLVPGRHDIAFVEFDNETEAGSARDALQGFKITPSNAMKITFAKK 223
>gi|58331942|ref|NP_001011120.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
gi|54038268|gb|AAH84519.1| hypothetical LOC496533 [Xenopus (Silurana) tropicalis]
gi|89268683|emb|CAJ82680.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
Length = 223
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%), Gaps = 15/236 (6%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+YINNL +KVK +LK+SL+A+F QFG +++I+A KT+K +GQA+++FK+++S
Sbjct: 2 DIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ ++QGFPFY+KPMRIQYAK+ SD+I K GTF +E++K ++ + + + AN
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKGTFADKEKKKEKKKAKAQEQAANAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ A A P SQ +P+ PPN ILF+ N+P +T M L M
Sbjct: 122 KKP-----ALASNANNAPGASQ-------NQQVPD--NPPNYILFLNNLPEETNEMMLSM 167
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ +E +A A +LQ KI + ITYA K
Sbjct: 168 LFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 223
>gi|308457660|ref|XP_003091200.1| CRE-RNP-3 protein [Caenorhabditis remanei]
gi|308257954|gb|EFP01907.1| CRE-RNP-3 protein [Caenorhabditis remanei]
Length = 223
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 140/237 (59%), Gaps = 18/237 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I+PN+T+Y+NNLNEK+K D+LK+SLH +F QFG I+++++F+ K +GQA +VFK+++S
Sbjct: 3 DINPNHTVYVNNLNEKIKRDELKRSLHMIFTQFGEIIQLMSFRKEKMRGQAHVVFKEISS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR-HEEKGKKRKDQHDA 129
A+ A+ +QGFPFY KPMRIQYA+ SD+IA+A GTFV + K KK D+
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVIARAKGTFVEKRATKSVTRSAAKKPYDKPTG 122
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
+ G + ++ E P PNNILF N+P +T P +Q
Sbjct: 123 KEHKKGGDAEKV----------------NTETTETEGPGQPNNILFCSNIPDETDPEQIQ 166
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F QFPG +EVR + AF+EY E + A Q+L + +I Q+ + +A K
Sbjct: 167 TIFGQFPGLREVRWMPNTKDFAFIEYESEDHSESARQALDNFRITPNHQIKVKFASK 223
>gi|194763787|ref|XP_001964014.1| GF21334 [Drosophila ananassae]
gi|190618939|gb|EDV34463.1| GF21334 [Drosophila ananassae]
Length = 216
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 150/238 (63%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA++VFK++ S
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GTF R ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKIKGTFKERPKKIKPPKP----------- 110
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPHDTTPMAL 188
A GA + P A++ P + PPN ILF+ N+P +T M L
Sbjct: 111 ------------APGADEKKDKKKKPTSAENSNPNTQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|195134172|ref|XP_002011511.1| snf [Drosophila mojavensis]
gi|193906634|gb|EDW05501.1| snf [Drosophila mojavensis]
Length = 216
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 151/243 (62%), Gaps = 36/243 (14%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH-------EEKGKKR 123
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ + EEK K+
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKK 121
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
K Q A A NP + PPN ILF+ N+P +T
Sbjct: 122 KKQSSAENA----NPN------------------------TQTEQPPNQILFLTNLPEET 153
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITY 242
M L M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+
Sbjct: 154 NEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITF 213
Query: 243 AKK 245
AKK
Sbjct: 214 AKK 216
>gi|194888638|ref|XP_001976948.1| GG18748 [Drosophila erecta]
gi|190648597|gb|EDV45875.1| GG18748 [Drosophila erecta]
Length = 216
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 151/238 (63%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK +GTF R ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKLNGTFKERPKKIKPPKP----------- 110
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPHDTTPMAL 188
A GA + P A++ P + PPN ILF+ N+P +T M L
Sbjct: 111 ------------APGAEEKKDKKKKPSSAENSNPNTQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|195448090|ref|XP_002071505.1| GK25839 [Drosophila willistoni]
gi|194167590|gb|EDW82491.1| GK25839 [Drosophila willistoni]
Length = 216
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 147/238 (61%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GTF R ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTFKERPKKVKVTKVVP--------- 112
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPHDTTPMAL 188
G + P ++ P + PPN ILF+ N+P +T M L
Sbjct: 113 --------------GTDDKKDKRKKPASTENAAPSTQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|307110924|gb|EFN59159.1| hypothetical protein CHLNCDRAFT_50008 [Chlorella variabilis]
Length = 236
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 140/231 (60%), Gaps = 18/231 (7%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
+T+Y+NNL EKV D LK+++H +F QFG IL++++ +T + +GQAW+VF+ A A+
Sbjct: 22 HTVYVNNLPEKVSQDDLKKAMHCIFGQFGKILDVVSRRTYRLRGQAWVVFEKAEDAKNAL 81
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
+ MQGFPF DKP+RI AKTKSD I+K DGTF RER K E+ K K +A Q
Sbjct: 82 DCMQGFPFLDKPLRIALAKTKSDAISKQDGTF--RERPK--VERQVKSKAAAEALQQRAK 137
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQF 195
P A A A + P PN+ILFV+N+P + M F QF
Sbjct: 138 AKPDAAAAAAAA-------------AAAAGQPRGPNHILFVENLPGTANEAMVGMLFQQF 184
Query: 196 PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
GFKEVRMV AKPGIAFVEY DE QA VAMQ LQ K+ + + I++A +
Sbjct: 185 TGFKEVRMVPAKPGIAFVEYSDEGQAGVAMQGLQGFKLATDKPMAISFANR 235
>gi|195476907|ref|XP_002100029.1| GE16390 [Drosophila yakuba]
gi|194187553|gb|EDX01137.1| GE16390 [Drosophila yakuba]
Length = 216
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 150/238 (63%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK GTF R ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKLKGTFKERPKKIKPPKP----------- 110
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPHDTTPMAL 188
A GA + P A++ P + PPN ILF+ N+P +T M L
Sbjct: 111 ------------APGAEEKKDKKKKPSSAENSNPNTQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|449512082|ref|XP_002199484.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Taeniopygia
guttata]
Length = 221
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 141/223 (63%), Gaps = 21/223 (9%)
Query: 28 KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87
K+ +LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S+T A+ ++QGFPFY KP
Sbjct: 15 KLSELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKP 74
Query: 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN----QAGMGLNPAYAGA 143
M IQYAKT SDII+K GTF +E RK EK K + + AN + G A A
Sbjct: 75 MHIQYAKTDSDIISKMRGTFADKENRK---EKKKAQTLEQSANAPNKKVIQGATQNSASA 131
Query: 144 YGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRM 203
G TP +Q+P PP+ ILF+ N+P +T M L M F+QFPGFKEVR+
Sbjct: 132 PGTTPQ-NQVP------------DNPPDYILFLNNLPEETNEMMLSMLFNQFPGFKEVRL 178
Query: 204 VEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
V + IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 179 VPGRHDIAFVEFENENQAGAARDALQGFKITPSHAMKITYAKK 221
>gi|417409102|gb|JAA51075.1| Putative spliceosomal protein snrnp-u1a/u2b, partial [Desmodus
rotundus]
Length = 258
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 148/260 (56%), Gaps = 47/260 (18%)
Query: 31 QLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90
+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+SAT A+ MQGFPFYDKPMRI
Sbjct: 1 ELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 60
Query: 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA--GMGLNPAYAG------ 142
QYAKT SDIIAK GTFV R+R++ E++ K ++ A +A G P
Sbjct: 61 QYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAKKAVQGGAATPVVGAVPGPVP 118
Query: 143 ---------------------------------AYGATPPLSQIP---YPGGAKSVIPEA 166
A G PP + P PG P +
Sbjct: 119 GMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLS 178
Query: 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQ 226
PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE+ +E+QA A
Sbjct: 179 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 238
Query: 227 SLQSLKIGQQQLL-ITYAKK 245
+LQ KI Q + I++AKK
Sbjct: 239 ALQGFKITQNNAMKISFAKK 258
>gi|17737284|ref|NP_511045.1| sans fille [Drosophila melanogaster]
gi|1173325|sp|P43332.1|SNRPA_DROME RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A; AltName: Full=Sex
determination protein snf
gi|157172|gb|AAA28441.1| small nuclear ribonucleoprotein [Drosophila melanogaster]
gi|463051|gb|AAA28903.1| nuclear protein [Drosophila melanogaster]
gi|7290566|gb|AAF46017.1| sans fille [Drosophila melanogaster]
gi|16769640|gb|AAL29039.1| LD45302p [Drosophila melanogaster]
gi|220944458|gb|ACL84772.1| snf-PA [synthetic construct]
gi|220954252|gb|ACL89669.1| snf-PA [synthetic construct]
Length = 216
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 149/238 (62%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK GTF R ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKP----------- 110
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA--PPNNILFVQNVPHDTTPMAL 188
A G + P A++ P A PPN ILF+ N+P +T M L
Sbjct: 111 ------------APGTDEKKDKKKKPSSAENSNPNAQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|195046460|ref|XP_001992159.1| GH24608 [Drosophila grimshawi]
gi|193893000|gb|EDV91866.1| GH24608 [Drosophila grimshawi]
Length = 216
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 148/238 (62%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPAP--------- 112
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPHDTTPMAL 188
G + P A++ P + PPN ILF+ N+P +T M L
Sbjct: 113 --------------GVEEKKDKKKKPSNAENANPNTQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|195340669|ref|XP_002036935.1| GM12396 [Drosophila sechellia]
gi|194131051|gb|EDW53094.1| GM12396 [Drosophila sechellia]
Length = 216
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 148/238 (62%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 EMRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK GTF R ++ +
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKIKPP------------- 108
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPHDTTPMAL 188
A G + P A++ P + PPN ILF+ N+P +T M L
Sbjct: 109 ----------KPAPGTDEKKDKKKKPSSAENSNPNTQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|148706068|gb|EDL38015.1| mCG22457 [Mus musculus]
Length = 275
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 157/281 (55%), Gaps = 59/281 (20%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL +++K +GQA+++FK+V
Sbjct: 8 ETRSNDTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSMKMRGQAFVIFKEV-- 65
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
++ MQGFPFY KPM IQYAKT SDIIAK GTF ER ++ E++ K ++ A
Sbjct: 66 ----MKPMQGFPFY-KPMHIQYAKTDSDIIAKMKGTF--EERDRKREKRKPKSQETPAAK 118
Query: 131 QAGMGLNPAYAGAYGAT------PPLSQIP------------------------------ 154
+A G A A GA PP+ Q P
Sbjct: 119 KAVQG--GAAAPMVGAVQPVLGMPPMPQAPRVMHHTLGQSPYMPPPDMIPPPGLAPGQIL 176
Query: 155 ---------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 177 PGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV- 235
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I+ AKK
Sbjct: 236 -RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISLAKK 275
>gi|112983808|ref|NP_001037384.1| U1 small nuclear ribonucleoprotein A [Bombyx mori]
gi|76496416|gb|ABA43713.1| SNF [Bombyx mori]
Length = 209
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 143/213 (67%), Gaps = 18/213 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK+++S
Sbjct: 4 DIRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQY+K SDIIAK+ GTF +ER KR K D
Sbjct: 64 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTF--QERPKR-----PKLPKGTDDG 116
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ +P+ +G IP G +V A PPN ILF+ N+P +T+ M L M
Sbjct: 117 KKKKNKDPSRLIGHG-------IPGAGILNNV--NAEQPPNQILFLTNLPDETSEMMLSM 167
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
F+QFPGFKEVR+V + IAFVE EM+ +
Sbjct: 168 LFNQFPGFKEVRLVPNRHDIAFVEL--EMKCNL 198
>gi|125983292|ref|XP_001355411.1| GA18235 [Drosophila pseudoobscura pseudoobscura]
gi|195162057|ref|XP_002021872.1| GL14287 [Drosophila persimilis]
gi|54643726|gb|EAL32469.1| GA18235 [Drosophila pseudoobscura pseudoobscura]
gi|194103770|gb|EDW25813.1| GL14287 [Drosophila persimilis]
Length = 216
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 146/238 (61%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA++VFK++ S
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPMRI Y+K SDI+AK GTF R ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKCDSDIVAKLKGTFKERPKKVKPPKP----------- 110
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPHDTTPMAL 188
G + P ++ P + PPN ILF+ N+P +T M L
Sbjct: 111 ------------TPGIDDKKDKKKKPVTTENSNPNTQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|195396809|ref|XP_002057021.1| GJ16850 [Drosophila virilis]
gi|194146788|gb|EDW62507.1| GJ16850 [Drosophila virilis]
Length = 216
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 150/243 (61%), Gaps = 36/243 (14%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH-------EEKGKKR 123
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ + EEK K+
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPAPGAEEKKDKK 121
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
K Q + NP + PPN ILF+ N+P +T
Sbjct: 122 KKQSSTENS----NPN------------------------TQTEQPPNQILFLTNLPEET 153
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITY 242
M L M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+
Sbjct: 154 NEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITF 213
Query: 243 AKK 245
AKK
Sbjct: 214 AKK 216
>gi|359358253|gb|AEV40671.1| SNF [Antheraea pernyi]
Length = 228
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 144/241 (59%), Gaps = 22/241 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFK---- 66
+I PN+TIYINNLNEK+K D+LK+SL+A+F QFG I + + Q
Sbjct: 4 DIRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQICDSCD-HDYEFDAQCPGCMPAGRR 62
Query: 67 -DVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
+++SAT A+ MQGFPFYDKPMRIQY+KT SD+IAK GTF R +R + + K
Sbjct: 63 LEISSATVALRSMQGFPFYDKPMRIQYSKTDSDVIAKIKGTFQERPKRPKMPKGTDDSKK 122
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
+ + + G +GA P G ++ E P PN ILF+ N+P +T+
Sbjct: 123 KKGKDVSRPG------AVHGANAP-------GVLNNINVEQP--PNQILFLTNLPDETSE 167
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
M L M F+QFPGFKEVR+V + IAFVE+G+EMQ+ A ++LQ KI + IT+AK
Sbjct: 168 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAKEALQGFKITPTHAMKITFAK 227
Query: 245 K 245
K
Sbjct: 228 K 228
>gi|428182625|gb|EKX51485.1| hypothetical protein GUITHDRAFT_159319 [Guillardia theta CCMP2712]
Length = 237
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 134/234 (57%), Gaps = 20/234 (8%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YINNLN+K+ L+ L+ + QFG +L+++A KT K +GQA++VF+ + +A+
Sbjct: 21 PNQTLYINNLNDKISKQVLRSELYVLCSQFGGVLDVVALKTGKMRGQAFVVFQQLTAASV 80
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A++K+QGF FY KPMR + +TKSD+IAK DGTFVP+++RK
Sbjct: 81 ALQKLQGFEFYGKPMRTAFCRTKSDVIAKEDGTFVPKQKRKTESHV-------------- 126
Query: 134 MGLNPAYAGAYGATPPLSQI-PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
PAY SQ P G + + E P N ILF++ +P + LQ F
Sbjct: 127 ----PAYKQPNKKQMVESQAEAQPEGDQDMQEETNQPINKILFLERLPDEINVEMLQTLF 182
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
QFPG EVRMV K GIAFVE+ + QA A +LQ K+ L ITYAKK
Sbjct: 183 KQFPGLAEVRMVPGKTGIAFVEFESDAQAATARDTLQGFKLTPTNTLRITYAKK 236
>gi|255710361|gb|ACU31000.1| U1 small nuclear ribonucleoprotein A [Ochlerotatus triseriatus]
Length = 202
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 133/216 (61%), Gaps = 30/216 (13%)
Query: 35 SLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94
SL+A+F QFG IL+I+A KTLK +GQA+++FK++ SAT A+ MQGFPFYDKPMRI Y+K
Sbjct: 12 SLYAIFSQFGQILDIVALKTLKMRGQAFIIFKEIGSATNAMRTMQGFPFYDKPMRINYSK 71
Query: 95 TKSDIIAKADGTFVPRERRKRH----EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPL 150
T SD+IAK GTF R ++ + +++ KK K Q +A +AG N +
Sbjct: 72 TDSDVIAKMKGTFKERPKKAKAPKPIQQEDKKSKKQKNA-EAGAAANSSAT--------- 121
Query: 151 SQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI 210
A PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + I
Sbjct: 122 ---------------AEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDI 166
Query: 211 AFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
AFVE+ E+Q+ A ++LQ KI + I++AKK
Sbjct: 167 AFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 202
>gi|425772063|gb|EKV10488.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
Pd1]
gi|425777240|gb|EKV15421.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
PHI26]
Length = 249
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 140/241 (58%), Gaps = 7/241 (2%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+Y+ NL+E++KIDQLK +L +F ++GTILE++A LK KGQA++VF +V SA
Sbjct: 9 IPPNATVYVKNLDERIKIDQLKHALEEIFSEYGTILEVVAKTNLKAKGQAFIVFDNVDSA 68
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
T A+E + GF ++KPM + YAKT SD + +G E KR K+RK H+A +
Sbjct: 69 TRAIEDINGFDLFEKPMVLDYAKTPSDATVQREGGSDELEAHKRRRLAEKERKQAHEALE 128
Query: 132 AGMGLNPAYAGAYGATPPLSQ-----IPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
A L A A + P + P +V+P+ PPN ILF++ +P D T
Sbjct: 129 AQKKLKRPAAAAEPSRPAKTTKGAGLKPTTAATTAVVPDEYLPPNKILFLRELPDDATQE 188
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLITYAK 244
L F +F GF+EVR+V + GIAFVEY E A A ++ + +G Q + +TY +
Sbjct: 189 GLSAIFGRFEGFQEVRLVPGRKGIAFVEYEAEAGAISAKEATSGMPMGDQGKAIRVTYQR 248
Query: 245 K 245
+
Sbjct: 249 Q 249
>gi|268553735|ref|XP_002634854.1| C. briggsae CBR-RNP-3 protein [Caenorhabditis briggsae]
Length = 220
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 138/236 (58%), Gaps = 19/236 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I+PN+TIY+NNLNEKVK D+LK+SLH +F Q+G I+++++F+ + +GQA +VFK+V+S
Sbjct: 3 DINPNHTIYVNNLNEKVKRDELKRSLHMIFAQYGEIIQLMSFRKERMRGQAHIVFKEVSS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ +QGFPFY KPMRIQYA+ SD+IA+A G++V E+R + + K+ + N
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVIARAKGSYV--EKRAKTTARAAKKPYEKPKN 120
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ E P PNNILF N+P T P +Q
Sbjct: 121 GEKRPEGEEKE----------------KETTAENEGPGLPNNILFCSNIPDGTDPDQIQH 164
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F QFPG +EVR + AFVEY E + A Q+L + +I Q+ + +A K
Sbjct: 165 IFGQFPGLREVRWMPNTKDFAFVEYESEDMSEPARQALDNFRITPSHQIKVKFATK 220
>gi|358340304|dbj|GAA48227.1| U1 small nuclear ribonucleoprotein A [Clonorchis sinensis]
Length = 314
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 146/269 (54%), Gaps = 39/269 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SPNNT+YI NLNEK+K D+LK+SL+AVF QFG IL+I+ +TLK +GQA++VF DV SAT
Sbjct: 49 SPNNTLYIRNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDVNSAT 108
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ MQ FP Y+KPMRI++AK SDIIAK GT+V R + + A A
Sbjct: 109 TALRAMQSFPLYEKPMRIEFAKGDSDIIAKRKGTYVARPKALSRAAAAAAAEAAAAAAAA 168
Query: 133 GMGLNPAYAGAY-----------------------GATPPLSQIPYPGGAKSVIPEAPAP 169
G A PP + GG + + + PAP
Sbjct: 169 FDASAGPQGGTSARAIRRRQQRAAAAAAAAAATSGAAVPPPPNM--DGGVQPAMTQ-PAP 225
Query: 170 P------------NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGD 217
P N ILF+ N+P D+ L M F+QF G++EVRMV + IAFVE+G+
Sbjct: 226 PPINPAMIPDQPPNKILFLTNLPEDSDEAMLSMLFNQFSGYREVRMVPGRHDIAFVEFGN 285
Query: 218 EMQATVAMQSLQSLKIGQ-QQLLITYAKK 245
E++A A LQ I + + IT+AKK
Sbjct: 286 EIEAGAAKHGLQGFNIRPGRPIRITFAKK 314
>gi|363731244|ref|XP_003640940.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Gallus
gallus]
Length = 207
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 14/219 (6%)
Query: 29 IDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88
+ +LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S+T A+ ++QGFPFY KPM
Sbjct: 1 MQKLKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPM 60
Query: 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM-GLNPAYAGAYGAT 147
RIQYAKT SDII+K GTF +E+RK ++ + + AN+ + G A G +
Sbjct: 61 RIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAANKKIIQGATQNSTSAPGTS 120
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
P Q+P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V +
Sbjct: 121 PQNQQVP------------DNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR 168
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 169 HDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 207
>gi|315044563|ref|XP_003171657.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
gi|311344000|gb|EFR03203.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
Length = 256
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 150/251 (59%), Gaps = 16/251 (6%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G+ I PN T+Y+ NL E++KIDQLK++L +F ++G+ILEI+A LK KGQA++VF +V
Sbjct: 8 GSTILPNPTVYVRNLEERIKIDQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNV 67
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSD--IIAKADGTFVPRERRKRHEEKGKKRKDQ 126
SAT A++++ GF ++KPM ++YAKT+SD ++ + G + +RKR E K+RK
Sbjct: 68 DSATRAIDEVNGFELFEKPMVLEYAKTRSDATVLREGGGEELEAHKRKRLAE--KERKQA 125
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQ----------IPYPGGAKSVIPEAPAPPNNILFV 176
DA +A L A A P S+ P A VIP+ PPN ILF+
Sbjct: 126 QDALEAQKKLKRPAGAAGAAGGPDSRPAKAAKGAGLKPTGAAAAPVIPDEYLPPNKILFL 185
Query: 177 QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236
+++P L F +FPGFKEVRMV + GIAFVEY +E A A ++ + +G+
Sbjct: 186 RDLPETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYDNESGAISAKEATSGMALGEN 245
Query: 237 Q--LLITYAKK 245
+ + +TY ++
Sbjct: 246 EKPIKVTYQRQ 256
>gi|281202145|gb|EFA76350.1| U2 small nuclear ribonucleoprotein B [Polysphondylium pallidum
PN500]
Length = 246
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 148/252 (58%), Gaps = 25/252 (9%)
Query: 2 EPEVAN-------QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT 54
EP++ N Q +E + N TIY+NNLNEK +L + L+++F +G+ILEI+A K
Sbjct: 8 EPDMPNGGEKEETQSSENTMNQTIYVNNLNEKPSKKKLTEQLYSLFSPYGSILEIVAAKR 67
Query: 55 LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRK 114
K +GQA++VFKD+ SA+ A+ +M GF F +PM IQYAK+KSD ++K DGT++
Sbjct: 68 QKMRGQAFIVFKDITSASNALREMNGFEFLGRPMSIQYAKSKSDAVSKLDGTYIE----- 122
Query: 115 RHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP--APPNN 172
KKR+ ++D ++ + A P + P P APPN
Sbjct: 123 ------KKRERENDQDKKKAKKQQTKKPSTTAKPKAAST----ANAQAAPLQPREAPPNK 172
Query: 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
ILFV+N+P M L M FSQFPGF+ + M AK G+AFVE+ D+ ++ VAM LQ K
Sbjct: 173 ILFVENLPEQCEEMMLNMLFSQFPGFQGISMTTAKKGVAFVEFDDDSKSAVAMTHLQGFK 232
Query: 233 IG-QQQLLITYA 243
+ ++ ++I++A
Sbjct: 233 VTPEKPMVISFA 244
>gi|67515655|ref|XP_657713.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gi|40746131|gb|EAA65287.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gi|259489698|tpe|CBF90183.1| TPA: U1 small nuclear ribonucleoprotein, putative (AFU_orthologue;
AFUA_5G11930) [Aspergillus nidulans FGSC A4]
Length = 252
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 143/243 (58%), Gaps = 9/243 (3%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+Y+ NL E++K+DQLK++L +F ++GTILEI+A + LK KGQA++VF +V SA
Sbjct: 10 IPPNPTVYVRNLEERIKLDQLKEALSEIFSEYGTILEIVAKRNLKAKGQAFIVFDNVDSA 69
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
T A++++ GF +DKPM + YAKT+SD + +G E KR K+R+ H+A +
Sbjct: 70 TRAIDEVNGFDLFDKPMVLDYAKTRSDATVRREGGDEELEAHKRRRLAEKERRQAHEALE 129
Query: 132 AGMGLNPAYAGA-------YGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTT 184
A L GA A P G A +VIP+ PPN ILF++ +P
Sbjct: 130 AQKKLKRPPVGAPEAPGRPVKAAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRELPDTAD 189
Query: 185 PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITY 242
+L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G + + +TY
Sbjct: 190 QGSLTAVFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGPEGKPIRVTY 249
Query: 243 AKK 245
++
Sbjct: 250 QRQ 252
>gi|301115920|ref|XP_002905689.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
gi|262110478|gb|EEY68530.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
Length = 233
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 145/236 (61%), Gaps = 18/236 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN+T+Y+NNLN+K+K D++K +L+A Q+G ILEI+ + + +GQAW+ F DV S
Sbjct: 15 DVPPNHTLYLNNLNDKIKADRMKATLYATLSQYGKILEIVMGRARRLRGQAWVTFDDVPS 74
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A++A+ + G +DKP+ I +AK K+D+IA+ +G+FVPRE+RKR K + Q
Sbjct: 75 ASSALRTVNGTTLFDKPVVIHFAKEKADVIARREGSFVPREKRKRDP----KPEQQTTKK 130
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
QA + A G+ A P ++P A PN ILF++ +P L +
Sbjct: 131 QASANGSAAATGSSTAAQP--RMP-----------AQNLPNKILFLEELPESCNKEMLGV 177
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F Q+ GFKEVRMV K G+AFVE+GDE QA +A+Q L K+ + L +++AKK
Sbjct: 178 LFKQYQGFKEVRMVPGKKGLAFVEFGDEAQAAIALQGLFGFKLTPTEALKVSFAKK 233
>gi|317037176|ref|XP_001398705.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus niger CBS
513.88]
Length = 251
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 145/242 (59%), Gaps = 8/242 (3%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+Y+ NL E++K+DQLK++L +F ++GT+LEI+A LK KGQA++VF V +A
Sbjct: 10 IPPNCTVYVRNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAA 69
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
T A++++ GF +DKPM + YAKT+SD+ +G E KR K+RK H+A +
Sbjct: 70 TRAIDEINGFELFDKPMVLDYAKTRSDMTVLREGGEDELEAHKRRRLAEKERKQAHEALE 129
Query: 132 AGMGLN-----PAYAGAYGATPPLSQI-PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
A L P G T + + P G A +VIP+ PPN ILF++++P
Sbjct: 130 AQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPDTADQ 189
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYA 243
+L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G+ + + +TY
Sbjct: 190 DSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGEAGKPIRVTYQ 249
Query: 244 KK 245
++
Sbjct: 250 RQ 251
>gi|119174440|ref|XP_001239581.1| hypothetical protein CIMG_09202 [Coccidioides immitis RS]
gi|303314307|ref|XP_003067162.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106830|gb|EER25017.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037431|gb|EFW19368.1| U1 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869777|gb|EAS28302.2| U1 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 251
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 140/241 (58%), Gaps = 7/241 (2%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN+T+Y+ NL E++K++QLK++L +F ++G+ILEI+A +K KGQA++VF +V SA
Sbjct: 11 IPPNSTVYVRNLEERIKVEQLKEALSEIFSEYGSILEIVAKTNVKAKGQAFIVFDNVDSA 70
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
T A+E++ GF ++KPM + YAKT+SD +G E KR K+RK +A +
Sbjct: 71 TRAIEEINGFELFEKPMVLDYAKTRSDATVLREGGEQELEAHKRKRLAEKERKQAQEALE 130
Query: 132 AGMGLNPAYAGAYGATPPLSQI-----PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
A L A P + P A VIP+ PPN ILF++ VP
Sbjct: 131 AQKKLKRPAAATADTRPAKTTRGAGLKPTGAAAAPVIPDEYLPPNKILFLREVPDSYDAS 190
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAK 244
L FS+F GFKEVRMV + GIAFVEY +E A A ++ + +G+ + + +TY +
Sbjct: 191 GLTAIFSRFEGFKEVRMVPGRKGIAFVEYENETGAISAKEATSGMALGENGKPMRVTYQR 250
Query: 245 K 245
+
Sbjct: 251 Q 251
>gi|296809910|ref|XP_002845293.1| small nuclear ribonucleoprotein U [Arthroderma otae CBS 113480]
gi|238842681|gb|EEQ32343.1| small nuclear ribonucleoprotein U [Arthroderma otae CBS 113480]
Length = 256
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 145/252 (57%), Gaps = 12/252 (4%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A G+ I PN T+Y+ NL E++KI+QLK++L +F ++G+ILEI+A LK KGQA++VF
Sbjct: 5 AASGSPIPPNPTVYVRNLEERIKIEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVF 64
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
+V SAT A++++ GF ++KPM ++YAKT+SD +G E KR K+RK
Sbjct: 65 DNVDSATRAIDEVNGFELFEKPMVLEYAKTRSDATVMREGGDEELEAHKRRRLAEKERKQ 124
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQ----------IPYPGGAKSVIPEAPAPPNNILF 175
+A +A L A A P S+ P A VIP+ PPN ILF
Sbjct: 125 AQEALEAQKKLKRPAGAAGAAGGPDSRPAKTAKGAGLKPIGAAAAPVIPDEYLPPNKILF 184
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
++ +P L F +FPGFKEVRMV + GIAFVEY +E A A ++ + +G+
Sbjct: 185 LRELPETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYDNESGAISAKEATSGMALGE 244
Query: 236 QQ--LLITYAKK 245
+ + +TY ++
Sbjct: 245 NEKPIKVTYQRQ 256
>gi|119478950|ref|XP_001259504.1| small nuclear ribonucleoprotein U)1a,U)2b [Neosartorya fischeri
NRRL 181]
gi|119407658|gb|EAW17607.1| small nuclear ribonucleoprotein U)1a,U)2b [Neosartorya fischeri
NRRL 181]
Length = 251
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 143/243 (58%), Gaps = 7/243 (2%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+ + PN T+Y+ NL E++KIDQLK +L +F ++G I++I+A LK KGQA++VF +V
Sbjct: 9 SSLPPNPTVYVRNLEERIKIDQLKVALEEIFSEYGNIVDIVAKTNLKAKGQAFIVFDNVE 68
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
SAT A+E++ GF +DKPM + YAKT+SD DG E KR K+RK H+A
Sbjct: 69 SATRAIEEVNGFELFDKPMVLDYAKTRSDATVLRDGGTEELEVHKRRRLAEKERKQAHEA 128
Query: 130 NQAGMGLNPAYAGAYGATPPLSQ-----IPYPGGAKSVIPEAPAPPNNILFVQNVPHDTT 184
+A L A A P + P G A +VIP+ PPN ILF++++P
Sbjct: 129 LEAQKKLKRPPGPADTARPAKAAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPDTAD 188
Query: 185 PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITY 242
+L F +F GF+EVR+V + GIAFVEY +E A A ++ ++ +G + + +TY
Sbjct: 189 QESLTAIFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATANMPMGDNGKPIRVTY 248
Query: 243 AKK 245
++
Sbjct: 249 QRQ 251
>gi|326481613|gb|EGE05623.1| U1 small nuclear ribonucleoprotein [Trichophyton equinum CBS
127.97]
Length = 256
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 144/249 (57%), Gaps = 12/249 (4%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G+ I PN T+Y+ NL E++K++QLK++L +F ++G+ILEI+A LK KGQA++VF +V
Sbjct: 8 GSSIPPNPTVYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNV 67
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
SAT A++++ GF ++KPM ++YAKTKSD +G E KR K+RK +
Sbjct: 68 DSATRAIDEVNGFELFEKPMVLEYAKTKSDATVMREGGDEELEVHKRRRLAEKERKQAQE 127
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQ----------IPYPGGAKSVIPEAPAPPNNILFVQN 178
A +A L A A P S+ P A VIP+ PPN ILF++
Sbjct: 128 ALEAQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGTAAAPVIPDEYLPPNKILFLRE 187
Query: 179 VPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ- 237
+P L F +FPGFKEVRMV + GIAFVEY +E A A ++ + +G+ +
Sbjct: 188 LPESYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMALGENEK 247
Query: 238 -LLITYAKK 245
+ +TY ++
Sbjct: 248 PIKVTYQRQ 256
>gi|198434778|ref|XP_002132163.1| PREDICTED: similar to GH24608 isoform 1 [Ciona intestinalis]
Length = 216
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 148/236 (62%), Gaps = 22/236 (9%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I P +TIY NNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK+++S
Sbjct: 2 DIKPTHTIYANNLNEKIKKEELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMR+ Y+K SD+IAK GT+ R + K+ ++K K+ A
Sbjct: 62 ATNALRSMQGFPFYDKPMRLAYSKKDSDVIAKMKGTYQERTKEKKKKKKEPKKPKAVSAA 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
G G G ++ + PPN+ILF+ N+P +T L M
Sbjct: 122 PKGQG---------------------AGGRADDDGSKNPPNHILFLNNLPPETQEEMLNM 160
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F++F GFKEVR+V + IAFVE+ E QA+ A +LQ KI + +T+AKK
Sbjct: 161 LFNRFNGFKEVRLVPGRHDIAFVEFEGEQQASEAKGALQGFKISPSNAMKVTFAKK 216
>gi|346977343|gb|EGY20795.1| U1 small nuclear ribonucleoprotein A [Verticillium dahliae VdLs.17]
Length = 246
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 138/238 (57%), Gaps = 9/238 (3%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+ NL E+VKID LK+SL +F ++G +LEI+A LK KGQA++VF D SA A++
Sbjct: 9 TVYVRNLEERVKIDVLKESLLQIFSEYGNVLEIIAKTNLKSKGQAFIVFDDADSAQNAID 68
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE--RRKRHEEKGKKRKDQHDANQAGM 134
++QGF +DKPM++ AKT+SD K G+ E RR+R EK KKR + Q M
Sbjct: 69 EVQGFQLFDKPMQVALAKTRSDATVKTQGSEEDFEAHRRRRLAEKDKKRALEAAEEQKRM 128
Query: 135 GLNPAYAGAYGATPPLSQIPYPG------GAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
+ A A A P G A SV+P+ PPN ILF+QN+P D AL
Sbjct: 129 QRSGAGAATDAAGRPAKAARGAGLKSSNPAASSVVPDEYLPPNKILFIQNLPEDFDIEAL 188
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F +F GF+EVR+V + GIAFVEY E A A ++ + +G+ + +TY ++
Sbjct: 189 TDIFGRFDGFREVRLVPGRRGIAFVEYDGEQGAITAKENTAGMVLGESSTIKVTYQRQ 246
>gi|146183888|ref|XP_001027266.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila]
gi|146143436|gb|EAS07024.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 247
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 142/236 (60%), Gaps = 24/236 (10%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PNNTIYINNLNE++ ID LKQ L +F ++G+ILEI A K ++ +GQA++VF+ +A A
Sbjct: 30 PNNTIYINNLNERISIDDLKQELFKLFSEYGSILEIKAKKNIRMRGQAFVVFEQIACAQK 89
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH-----EEKGKKRKDQHD 128
A+E + FY K + + +AKTKSD I K +G + PR+ + + EE+ +K + +
Sbjct: 90 AIEALNRKNFYGKALHLNFAKTKSDAILKREGAYAPRQPKIFNAADFIEERQSNKKQKEN 149
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
N A A A PL Q ++I P++ LF++N+P ++ +
Sbjct: 150 LK------NKESATAKLAAQPLVQ-------NTII-----QPHHTLFLENLPINSNTEVI 191
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ FF+ FPGFKEVR+V K +AFVEY DE +AT A+ SLQS KIG Q + YAK
Sbjct: 192 KAFFATFPGFKEVRLVPQK-RVAFVEYEDENKATAALASLQSFKIGDQTVTANYAK 246
>gi|317150456|ref|XP_001824039.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus oryzae
RIB40]
Length = 251
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 144/244 (59%), Gaps = 9/244 (3%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
N I PN+T+Y+ NL E+VK+DQLK++L +F ++G +++I+A LK KGQA++VF V
Sbjct: 9 NSIPPNSTVYVRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVE 68
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
SA+ A++++ GF +DKPM + +AKT+SD +G E KR K+RK H+A
Sbjct: 69 SASNAIDEINGFELFDKPMVLDFAKTRSDATVLREGGEDELEAHKRRRLAEKERKQAHEA 128
Query: 130 NQAGMGLNPAYAGAYGATPPLSQI------PYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
+A L GA +T P P G +VIP+ PPN ILF++++P
Sbjct: 129 LEAQKKLKRP-PGAPDSTRPAKTAKGAGLKPTSGATAAVIPDEYLPPNKILFLRDLPDTA 187
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLIT 241
+L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G+ + + +T
Sbjct: 188 DQESLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGESGKPIRVT 247
Query: 242 YAKK 245
Y ++
Sbjct: 248 YQRQ 251
>gi|327297312|ref|XP_003233350.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326464656|gb|EGD90109.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 256
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 145/252 (57%), Gaps = 12/252 (4%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A G+ I PN T+Y+ NL E++K++QLK++L +F ++G+ILEI+A LK KGQA++VF
Sbjct: 5 AVSGSSIPPNPTVYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVF 64
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
+V SAT A++++ GF ++KPM ++YAKTKSD +G E KR K+RK
Sbjct: 65 DNVESATRAIDEVNGFELFEKPMVLEYAKTKSDATVMREGGDEELEAHKRMRLAEKERKQ 124
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQ----------IPYPGGAKSVIPEAPAPPNNILF 175
+A +A L A A P S+ P A V+P+ PPN ILF
Sbjct: 125 AQEALEAQKKLKRPAGAAGTAGGPDSRPTKAQKGTGLKPTGTAAAPVVPDEYLPPNKILF 184
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
++ +P L F +FPGFKE+RMV + GIAFVEY +E A A ++ + +G+
Sbjct: 185 LRELPETYDADGLSAIFGRFPGFKEIRMVPGRKGIAFVEYENESGAISAKEATSGMALGE 244
Query: 236 QQ--LLITYAKK 245
+ + +TY ++
Sbjct: 245 NEKPIKVTYQRQ 256
>gi|255953987|ref|XP_002567746.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589457|emb|CAP95601.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 249
Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 137/241 (56%), Gaps = 7/241 (2%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+Y+ NL+E++K+DQLK +L +F ++GTILEI+A LK KGQA++VF ++ SA
Sbjct: 9 IPPNATVYVKNLDERIKVDQLKHALEEIFSEYGTILEIVAKTNLKAKGQAFIVFDNIESA 68
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
T A+E + GF ++KPM + YAKT SD + + E KR K+RK H+A +
Sbjct: 69 TRAIEDINGFDLFEKPMVLDYAKTPSDATVQRESGGDELEAHKRRRLAEKERKQAHEALE 128
Query: 132 AGMGLNPAYAGAYG-----ATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
A L A A T P +V+P+ PPN ILF++ +P D T
Sbjct: 129 AQKKLKRPAAAAEPARPAKTTKGAGLKPTTAATTAVVPDEYLPPNKILFLRELPDDATQE 188
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLITYAK 244
L F +F GF+EVR+V + GIAFVEY E A A ++ + +G Q + +TY +
Sbjct: 189 GLSAIFGRFEGFQEVRLVPGRKGIAFVEYEAEAGAISAKEATSGMPMGDQGKAIRVTYQR 248
Query: 245 K 245
+
Sbjct: 249 Q 249
>gi|402220077|gb|EJU00150.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 276
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 141/234 (60%), Gaps = 10/234 (4%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NLNE V ++ LKQ+L +FK +G +L+++A L+ +GQA++ F D +A
Sbjct: 51 PCETVYVQNLNESVTMNTLKQTLTNLFKNYGEVLDVVAHHNLRMRGQAFVSFADPEAAAK 110
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
AV+++ FP Y KPM++ +AKT+SD ++ K DGT + + +R E K + R D +A
Sbjct: 111 AVKEVDRFPLYGKPMKLSFAKTRSDAVVQKLDGTHMEEYKAERMERKKRARADNPLRRKA 170
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
L A AG A P G +P+ PPN ILF+QN+P TT LQM F
Sbjct: 171 QARLK-ASAGDGTA-------PQAGRRIVQMPDEYLPPNKILFLQNLPDSTTLDQLQMLF 222
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
SQ+PG EVR+V K IAFVEY DE A+ A +L + ++ G+ ++ +T+A+K
Sbjct: 223 SQYPGLHEVRLVPTKKDIAFVEYVDENAASTAKDALHNYRLDGEAKMKVTFARK 276
>gi|449512588|ref|XP_004176179.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Taeniopygia
guttata]
Length = 221
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 140/220 (63%), Gaps = 15/220 (6%)
Query: 28 KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87
K+ +LK+SL+ +F QFG +++I+A KT+K +GQA+++FK++ S+T A+ ++QGFPFY KP
Sbjct: 15 KLSELKRSLYVLFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKP 74
Query: 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM-GLNPAYAGAYGA 146
M IQYAKT SDII++ GTF +E+RK ++ + + N+ + G A A G
Sbjct: 75 MHIQYAKTDSDIISEMRGTFADKEKRKEKKKAKTLEQSANAPNKKVIQGATQNSASAPGT 134
Query: 147 TPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206
TP +Q+P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V
Sbjct: 135 TPQ-NQVP------------DNPPNCILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPG 181
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 182 RHDIAFVEFENENQAGAARDALQGFKIPPSHAMKITYAKK 221
>gi|198434776|ref|XP_002132167.1| PREDICTED: similar to GH24608 isoform 2 [Ciona intestinalis]
Length = 220
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 150/236 (63%), Gaps = 18/236 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I P +TIY NNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK+++S
Sbjct: 2 DIKPTHTIYANNLNEKIKKEELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMR+ Y+K SD+IAK GT+ + R + ++K KK +
Sbjct: 62 ATNALRSMQGFPFYDKPMRLAYSKKDSDVIAKMKGTY---QERTKEKKKKKKEPKKVQIL 118
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P GA G G+K+ PPN+ILF+ N+P +T L M
Sbjct: 119 YISVSAAPKGQGAGGRAD-------DDGSKN-------PPNHILFLNNLPPETQEEMLNM 164
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F++F GFKEVR+V + IAFVE+ E QA+ A +LQ KI + +T+AKK
Sbjct: 165 LFNRFNGFKEVRLVPGRHDIAFVEFEGEQQASEAKGALQGFKISPSNAMKVTFAKK 220
>gi|240275413|gb|EER38927.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325091251|gb|EGC44561.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus H88]
Length = 253
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 9/250 (3%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
VA + ++PN+TIY+ NL E++KI+ LK++L +F ++G I++I+A LK KGQA++V
Sbjct: 4 VAATASGVTPNSTIYVRNLEERIKIESLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVV 63
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRK 124
F +V SAT A+E++ GF ++KPM + YAKT+SD + E KR K+RK
Sbjct: 64 FDNVDSATRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEAELEAHKRKRLAEKERK 123
Query: 125 DQHDANQAGMGLNPAYAGAYGATPPLSQI-------PYPGGAKSVIPEAPAPPNNILFVQ 177
+A +A L A GA S++ P A VIP+ PPN ILF++
Sbjct: 124 QAQEALEAQKKLKRGAAAPGGAETRPSKVTRGTGLKPSNAAAAPVIPDEYLPPNKILFLR 183
Query: 178 NVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-- 235
+P L F +F GFKEVRMV + GIAFVEY E A A ++ + +G+
Sbjct: 184 EIPDSLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENG 243
Query: 236 QQLLITYAKK 245
+ + +TY ++
Sbjct: 244 KPIRVTYQRQ 253
>gi|19113216|ref|NP_596424.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe
972h-]
gi|74676131|sp|O74968.1|RU1A_SCHPO RecName: Full=U1 small nuclear ribonucleoprotein usp102; Short=U1
snRNP protein usp102
gi|3169094|emb|CAA19287.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe]
Length = 249
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 140/238 (58%), Gaps = 18/238 (7%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P+ T+YI N+ EK+++ LK+ L +F +G ++++ A KTL+ +GQA++VF ++ +A+
Sbjct: 23 TPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENAS 82
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A++ +QG+P Y KPM IQY+K+KSDII V RE + E + K RK++ + +
Sbjct: 83 RALKDLQGYPLYGKPMMIQYSKSKSDII-------VQRESPEEIETRKKDRKNRREMLKR 135
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPG---GA--KSVIPEAPAPPNNILFVQNVPHDTTPMA 187
L PA A P + P P GA KS I E PPN +L +QN+P +
Sbjct: 136 TSALQPA------APKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADV 189
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
L F F GF+EVRMV + GIAFVEY + +ATVA + + Q+ +T+A+K
Sbjct: 190 LTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFARK 247
>gi|212529314|ref|XP_002144814.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074212|gb|EEA28299.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 254
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 140/242 (57%), Gaps = 10/242 (4%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y++NL E+VKID LK++L +F ++GTILEI+A K LK KGQA++VF +V SA
Sbjct: 13 PNPTVYVHNLEERVKIDDLKEALTEIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESAQR 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E++ GF KPM + +AKT+SD +G E KR K+RK +A +A
Sbjct: 73 AIEEVNGFDLLGKPMSLDFAKTRSDATVLREGGSDELEVHKRKRLAEKERKQAQEALEAQ 132
Query: 134 MGLN-------PAYAGAYGATPPLSQI-PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
L PA AG + + P G A +V+P+ PPN ILF++ +P D
Sbjct: 133 KKLKRPAGVPVPAEAGRPAKAARGTGLKPTTGAATAVVPDEYLPPNKILFLRELPEDADA 192
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITYA 243
L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G + + +TY
Sbjct: 193 DMLTSIFGRFEGFREVRLVPGRKGIAFVEYENETGAISAKEATSGMPMGPNAKPIRVTYQ 252
Query: 244 KK 245
++
Sbjct: 253 RQ 254
>gi|449513226|ref|XP_002193869.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Taeniopygia
guttata]
Length = 322
Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 140/219 (63%), Gaps = 15/219 (6%)
Query: 29 IDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88
+ +LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S+T A+ ++QGFPFY KPM
Sbjct: 117 LPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPM 176
Query: 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM-GLNPAYAGAYGAT 147
IQYAKT SDII++ GTF +E+RK ++ + + N+ + G A A G T
Sbjct: 177 HIQYAKTDSDIISEMRGTFADKEKRKEKKKAKTLEQSANAPNKKVIQGATQNSASAPGTT 236
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
P +Q+P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V +
Sbjct: 237 PQ-NQVP------------DNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR 283
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E QA A +LQ KI + ITYAKK
Sbjct: 284 HDIAFVEFENENQAGAARDALQGFKIPLSHAMKITYAKK 322
>gi|167537765|ref|XP_001750550.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770971|gb|EDQ84646.1| predicted protein [Monosiga brevicollis MX1]
Length = 345
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 141/258 (54%), Gaps = 34/258 (13%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YINNL+E+VK D+LK++L A+F QFG IL ++A + K +GQA++VF + +A
Sbjct: 95 PNQTLYINNLSERVKEDELKKALEAIFNQFGKILRVVAMSSFKRRGQAFVVFDSIEAAEK 154
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ MQ FPF KPMRI +AKTKSDI+AK DG F PR + Q AG
Sbjct: 155 ALNAMQSFPFCGKPMRINFAKTKSDIVAKNDGAFKPRVKAPLGPRPTPPGGGQAPYPGAG 214
Query: 134 MGLNPAYAGAYGA--TPPLSQIPYPGGAKS-----------------------VIPEAPA 168
Y A G+ P + Y G + + E P+
Sbjct: 215 -----EYMQAPGSPGEPSSKRGRYESGEAAPPPPPGPPGQTAPSGHAPAAPPPNMAEDPS 269
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
P ILF++N+P D T L F +FPGFKEVR+V +P I FVEY +E+QA+ A+ +L
Sbjct: 270 P---ILFLENLPSDRTQEMLTALFKEFPGFKEVRLVPIRPDIGFVEYENEVQASAALPAL 326
Query: 229 QSLKIG-QQQLLITYAKK 245
++ ++ ++++KK
Sbjct: 327 NGKEVTPGNKMRVSFSKK 344
>gi|156049745|ref|XP_001590839.1| hypothetical protein SS1G_08579 [Sclerotinia sclerotiorum 1980]
gi|154692978|gb|EDN92716.1| hypothetical protein SS1G_08579 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 257
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 143/248 (57%), Gaps = 19/248 (7%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YINNL E VKI L ++L +F ++GTILEI+A LK KGQA++VF++V SAT
Sbjct: 13 PNATLYINNLEETVKIPALIEALTELFSEYGTILEIIAKTNLKAKGQAFIVFENVESATK 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE--RRKRHEEKGKKRKDQHDANQ 131
A+E +QGF + K MRI YAKT+SD K +G E +R+R EK KK+ + ++
Sbjct: 73 AIEDIQGFELFGKEMRIAYAKTRSDASVKREGGEEEYETHKRRRLAEKDKKKAAELASSN 132
Query: 132 AGMGLNPAYAGAYGATP------PLSQIPYPG------GAKSVIPEAPAPPNNILFVQNV 179
L AGA A P P+ G A +V+P+ PPN ILFVQN+
Sbjct: 133 T---LKRPSAGAPLANPADLAARPIKATRGAGLKSSNPAAAAVVPDEYLPPNKILFVQNL 189
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239
P + L F +F GF+EVR+V + GIAFVEY E + A ++ + +G +Q +
Sbjct: 190 PEEYDVDMLTSIFGRFEGFREVRLVPGRKGIAFVEYETETGSIGAKENTAGMTLGDEQKV 249
Query: 240 I--TYAKK 245
I TY ++
Sbjct: 250 IKVTYQRQ 257
>gi|340960349|gb|EGS21530.1| hypothetical protein CTHT_0033900 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 250
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 144/250 (57%), Gaps = 12/250 (4%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
+NQG + P T+Y+ NL E+VK+D+LK++L+ +F ++G +++I+A LK KGQA++VF
Sbjct: 3 SNQGQQ-PPIATVYVRNLEERVKVDKLKEALYTIFSEYGNVIDIVAKTNLKAKGQAFIVF 61
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
A AVE++QGF ++KPM++ A+T+SD + + E KRH K+RK
Sbjct: 62 DKPEPALTAVEELQGFELFEKPMQVALARTRSDATVQRYCSEEEFEAHKRHRMAEKERKK 121
Query: 126 QHDANQA--------GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQ 177
+A + G G+ A A P + PG A V+P+ PPN ILFVQ
Sbjct: 122 AAEAEEQKRLKRPIPGSGVEAGARPAKSARGPGLKSTAPGAA-PVVPDEYLPPNRILFVQ 180
Query: 178 NVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQ 235
N+P D AL F +F GF+EVRMV + GIAFVEY E A A ++ LK G+
Sbjct: 181 NLPDDFDKDALTAIFGRFEGFREVRMVPGRSGIAFVEYESEAGAITAKENTAGMPLKNGE 240
Query: 236 QQLLITYAKK 245
+ + +TY ++
Sbjct: 241 KIMKVTYQRQ 250
>gi|325182719|emb|CCA17174.1| U1 small nuclear ribonucleoprotein A putative [Albugo laibachii
Nc14]
Length = 234
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 135/233 (57%), Gaps = 24/233 (10%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+YI+NLN+K+K D+LKQSL+A F QFG +LEI FK +GQAW+ F DV SA+
Sbjct: 25 PIHTLYIHNLNDKIKPDRLKQSLYASFSQFGKVLEIAIFKARFLRGQAWITFDDVPSASN 84
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ M +DK M +Q+AK +SD+IA+ +GTFVPRE++ R K ++ +
Sbjct: 85 ALRSMNNTTIFDKNMIVQFAKQESDVIARRNGTFVPREKQSRDVPHSSKSDEEMRERKRS 144
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
M ++ P++ILF+Q++P L++ F
Sbjct: 145 M----------------------APPPPPPRQSQHLPHHILFLQDLPPSCNQDMLRVLFE 182
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
Q+ G+KEVRMV K +AFVE+GDE QA+VA+Q L K+ +L I++AK+
Sbjct: 183 QYHGYKEVRMVPGK-SLAFVEFGDESQASVALQGLYGFKLTSTDVLKISFAKR 234
>gi|322709895|gb|EFZ01470.1| small nuclear ribonucleoprotein [Metarhizium anisopliae ARSEF 23]
Length = 242
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 139/239 (58%), Gaps = 9/239 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+Y++NL E+VKI L +SL +F +FG +++I+A K LK KGQA++VF D SA
Sbjct: 6 PISTVYVHNLEERVKIQPLTESLKTIFSEFGDVVDIVAKKNLKAKGQAFIVFSDPDSARD 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E++QGF +DKPM++ AKT+SD + + + E KR+ K+++ +A A
Sbjct: 66 AIEELQGFQLFDKPMKLSLAKTRSDKSIEMNCSLDEFEAHKRNRLSEKEKRLALEA--AD 123
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKS-------VIPEAPAPPNNILFVQNVPHDTTPM 186
P A S++ P G KS VIP+ PPN ILF+QN+P +
Sbjct: 124 SERQPKRGAGSTADNRPSKLSRPSGLKSTGPATSQVIPDEYLPPNKILFLQNIPEEYDVD 183
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
AL F +F GF+E+R+V + GIAFVEY E A A ++ +K+G + +TY ++
Sbjct: 184 ALGAIFGRFEGFREIRLVPGRRGIAFVEYEAEQGAIDAKENTSGMKLGDTAIKVTYQRQ 242
>gi|258567630|ref|XP_002584559.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906005|gb|EEP80406.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1150
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 93/236 (39%), Positives = 138/236 (58%), Gaps = 13/236 (5%)
Query: 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79
+ NL E+VK+DQLK++L +F ++G+ILEI+A LK KGQA++VF +V SAT A+E++
Sbjct: 918 VRNLEERVKVDQLKEALSEIFAEYGSILEIVAKSNLKAKGQAFIVFDNVDSATRAIEEIN 977
Query: 80 GFPFYDKPMRIQYAKTKSD--IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLN 137
GF ++KPM + YAKT+SD ++ +A + +R+R EK +K+ + NQ +
Sbjct: 978 GFELFEKPMVLDYAKTRSDATVLKEAGEQELETHKRRRLAEKERKQAQEALENQKKLK-R 1036
Query: 138 PAYAGAYGATPPLSQI------PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMF 191
P AGA T P P A VIP+ PPN ILF++ VP L
Sbjct: 1037 P--AGAAADTRPAKTTRGAGLKPTGAAAAPVIPDEYLPPNKILFLREVPDSYDSAGLTAI 1094
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAKK 245
F +F GFKEVRMV + GIAFVEY E A A ++ + +G+ + + +TY ++
Sbjct: 1095 FGRFEGFKEVRMVPGRKGIAFVEYESEAGAISAKEATSGMTLGENGKPMRVTYQRQ 1150
>gi|148696478|gb|EDL28425.1| mCG19497, isoform CRA_b [Mus musculus]
Length = 203
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 35/236 (14%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPM + K K+ + +A AN
Sbjct: 62 STNALRQLQGFPFYGKPMEKKKEKKKAKTMEQAAAA----------------------AN 99
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 100 KKPGQGTPNAANTQGTAAPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 147
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 148 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 203
>gi|350630544|gb|EHA18916.1| hypothetical protein ASPNIDRAFT_42727 [Aspergillus niger ATCC 1015]
Length = 249
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 143/242 (59%), Gaps = 10/242 (4%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+ NL E++K+DQLK++L +F ++GT+LEI+A LK KGQA++VF V +A
Sbjct: 10 IPPNCTV--RNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAA 67
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
T A++++ GF +DKPM + YAKT+SD+ +G E KR K+RK H+A +
Sbjct: 68 TRAIDEINGFELFDKPMVLDYAKTRSDMTVLREGGEDELEAHKRRRLAEKERKQAHEALE 127
Query: 132 AGMGLN-----PAYAGAYGATPPLSQI-PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
A L P G T + + P G A +VIP+ PPN ILF++++P
Sbjct: 128 AQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPDTADQ 187
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYA 243
+L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G+ + + +TY
Sbjct: 188 DSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGEAGKPIRVTYQ 247
Query: 244 KK 245
++
Sbjct: 248 RQ 249
>gi|149041256|gb|EDL95189.1| rCG27500, isoform CRA_b [Rattus norvegicus]
Length = 203
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 35/236 (14%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPM + K K+ + +A AN
Sbjct: 62 STNALRQLQGFPFYGKPMEKKKEKKKAKTMEQAAAA----------------------AN 99
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 100 KKPGQGTPNSANTQGNAAPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 147
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 148 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 203
>gi|349605397|gb|AEQ00652.1| U2 small nuclear ribonucleoprotein B''-like protein, partial [Equus
caballus]
Length = 197
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 129/209 (61%), Gaps = 13/209 (6%)
Query: 38 AVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKS 97
A+F QFG +++I+A KT+K +GQA+++FK++ S+T A+ ++QGFPFY KPMRIQYAKT S
Sbjct: 1 ALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDS 60
Query: 98 DIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPG 157
DII+K GTF +E++K ++ + AN+ P G + P Q+P
Sbjct: 61 DIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKPGQGTPNSVNTQGNSTPNPQVP--- 117
Query: 158 GAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGD 217
PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ +
Sbjct: 118 ---------DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFEN 168
Query: 218 EMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ QA A +LQ KI + ITYAKK
Sbjct: 169 DGQAGAARDALQGFKITPSHAMKITYAKK 197
>gi|115387505|ref|XP_001211258.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195342|gb|EAU37042.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 254
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 138/238 (57%), Gaps = 7/238 (2%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N+ + NL E++K+D LK++L +F ++G ILEI+A LK KGQA++VF +V SAT A
Sbjct: 17 NHLTQVRNLEERIKVDNLKEALSEIFSEYGNILEIVAKTNLKAKGQAFIVFDNVESATRA 76
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM 134
++++ GF +DKPM + YAKT+SD +G E KR K+RK H+A +A
Sbjct: 77 IDEINGFELFDKPMVLDYAKTRSDATVLREGGEDELEVHKRRRLAEKERKQAHEALEAQK 136
Query: 135 GLNPAYAGAYGATPPLSQ-----IPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
L A P + P G A +VIP+ PPN ILF++++P + +L
Sbjct: 137 KLKRPPGAPEAARPAKTAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPDNADQDSLT 196
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
F +F GF+EVR+V + GIAFVEY +E A A ++ + +G+Q + +TY ++
Sbjct: 197 AVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGEQGKPIRVTYQRQ 254
>gi|320167853|gb|EFW44752.1| SNF [Capsaspora owczarzaki ATCC 30864]
Length = 262
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 145/249 (58%), Gaps = 16/249 (6%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+ I P+ T+Y+NNLNEK+K ++L+ +L+ +F QFG +L+I+A KTLK +GQA++VF D+
Sbjct: 17 SSIPPSQTLYVNNLNEKLKKEELRAALYTIFTQFGPVLDIVALKTLKMRGQAFIVFHDIT 76
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGT--------FVPRERRKRHEEKGK 121
S+ A+ +QGF FY KPMRI +AK++S + + +G F+P+ +R + E++
Sbjct: 77 SSANALRSLQGFSFYGKPMRITFAKSRSYAVGRFNGEPDSHVRRPFIPKNQRPKGEKQPG 136
Query: 122 KRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQ 177
KR A + G +N A G P+ Q PG S +AP P+NILFVQ
Sbjct: 137 KRNPNGAAAASSNGDAQAMNTEAPAAAGNHAPMLQQQQPGFGFS---QAPEIPHNILFVQ 193
Query: 178 NVPHDTTPMALQMFFSQF-PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236
N+P T + F + G +VR+V + IAFVEY +E A A +L K+G
Sbjct: 194 NLPQGITQDDIFNLFRGYTAGSCDVRLVPNRADIAFVEYENEGIAANAKATLHGYKMGDN 253
Query: 237 QLLITYAKK 245
L +T++KK
Sbjct: 254 NLSVTFSKK 262
>gi|353234729|emb|CCA66751.1| related to small nuclear ribonucleoprotein snRNP U1A
[Piriformospora indica DSM 11827]
Length = 274
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 10/247 (4%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
P Q + + T+YI NLN++VK+ +K +L +F+ +G +L+++A + ++ +GQA+
Sbjct: 34 PATEEQEEPENASETLYIQNLNDQVKLSYMKTTLTNLFRHYGKVLDVVAHRNVRMRGQAF 93
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
+ F V A A++++Q FP Y KPM++ YAKT+S+ + K T P E + H + K+
Sbjct: 94 VSFAHVDLARKALKEVQKFPLYGKPMQVSYAKTRSEAVVK---TLSPEEFDEFHALRLKR 150
Query: 123 RKDQHDANQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVI--PEAPAPPNNILFVQNV 179
+K N L A A GA P + P P + V+ P+ PPN ILFVQN+
Sbjct: 151 KKRSRWDNPVRRKLRLKKEALATGAQP---EAPAPTAKRPVVLMPDEYLPPNQILFVQNL 207
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQL 238
P D T AL FS+F F EVRM+ K IAFVEY DE ATVA +L + K+ G+ ++
Sbjct: 208 PPDITKDALVAMFSRFENFYEVRMIPTKKDIAFVEYADEASATVAKDALHNFKLDGEAKI 267
Query: 239 LITYAKK 245
+TYA+K
Sbjct: 268 KVTYARK 274
>gi|302891485|ref|XP_003044624.1| hypothetical protein NECHADRAFT_100804 [Nectria haematococca mpVI
77-13-4]
gi|256725549|gb|EEU38911.1| hypothetical protein NECHADRAFT_100804 [Nectria haematococca mpVI
77-13-4]
Length = 243
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 8/237 (3%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
+T+Y+ NL E+VK++ L ++L VF +FG +++++A K LK KGQA++VF D SA +A+
Sbjct: 8 STVYVQNLEERVKLESLTEALRTVFSEFGNVVDVVAKKNLKAKGQAFVVFDDAESARSAI 67
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
E++ GF + KPM++ A+++SD + + + E KRH + K ++ +A +
Sbjct: 68 EEVDGFELFGKPMKVALARSRSDKTVEMNCSQEEFESHKRHRQAEKDKRKALEAAEEQRQ 127
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-------PPNNILFVQNVPHDTTPMAL 188
LN GA + P ++ P G KS A PPN ILFVQN+P D AL
Sbjct: 128 LNKRGPGAAPDSRP-AKTARPSGLKSTSAAAAGGVLDEFLPPNKILFVQNLPEDYDIEAL 186
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F +F GF+EVR+V + GIAFVEY E A A ++ + +G++ + +TY ++
Sbjct: 187 TGVFGRFEGFREVRLVPGRRGIAFVEYEAEQGAITAKENTAGMSLGEKPIKVTYQRQ 243
>gi|430811247|emb|CCJ31263.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 367
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 10/232 (4%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
P + + + + P+ TIYI NL+EKVKID LK+SL AVF +GTIL+I+A K ++ +GQA+
Sbjct: 16 PVIPTELSVLPPSETIYIRNLSEKVKIDILKKSLEAVFSSYGTILDIIAHKNIRMRGQAF 75
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
+VF + SA A+ +Q F +DKPM +QY+KTKSD K GT E + H+++ +
Sbjct: 76 VVFDSIDSAQKAIADVQAFTLFDKPMVLQYSKTKSDATVKRLGT---HEEFEEHKKRRLE 132
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
+K+Q + Q A+ ++ IP+ PP+ ILF+Q +P +
Sbjct: 133 KKEQLKSTQPK-------TKQINASTTKKNTSKKTQKQNTIPDEHLPPHKILFLQKLPEN 185
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
T L F++F GFKEVRMV +PGIAFVEY A +A + +G
Sbjct: 186 ITAEVLSAVFNRFSGFKEVRMVPGRPGIAFVEYETNDDAVIAKHGTVGMALG 237
>gi|400600067|gb|EJP67758.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 244
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 142/245 (57%), Gaps = 13/245 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E +P +T+Y+ NL E+VK + L +L VF +FG +++++A LK KGQA++VF AS
Sbjct: 3 EQAPISTVYVQNLEERVKPEPLTDALRTVFSEFGRVVDVVAKTNLKAKGQAFVVFDAPAS 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A AVE++ GFP +DKPMR+ A+T+SD + +G+ E K+H K++K +A
Sbjct: 63 AREAVEEIDGFPLFDKPMRLAVARTRSDKTVEMNGSAEELEAHKQHRLAEKEKKKAIEAA 122
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKS-------VIPEAPAPPNNILFVQNVP--- 180
+ AGA P S+I P G KS VIP+ PPN ILF+QNVP
Sbjct: 123 EGTKHGGKRGAGAGADGRP-SKIAKPSGLKSTSVAQAAVIPDEYLPPNKILFLQNVPDEY 181
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240
HD AL F +F GF+EVR+V + GIAFVEY E A A +S + +G + + +
Sbjct: 182 HDVE--ALAGIFGRFDGFREVRLVPGRRGIAFVEYDAEQGAVAAKESTAGMTLGDKNIKV 239
Query: 241 TYAKK 245
TY ++
Sbjct: 240 TYQRQ 244
>gi|440801091|gb|ELR22116.1| hypothetical protein ACA1_159130 [Acanthamoeba castellanii str.
Neff]
Length = 270
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 155/278 (55%), Gaps = 54/278 (19%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN T+Y+NNLNEKVK D+L+++L+ +F Q+GT+L+I+A K+LK +GQA+++F+D+ S
Sbjct: 4 EVPPNETLYVNNLNEKVKRDELRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDIGS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV--------PRERRKRHEEKGKK 122
A+ A++ +Q F FYDKPM IQYAK+KSD++AK GTFV + + K +++
Sbjct: 64 ASTALKALQSFAFYDKPMHIQYAKSKSDLVAKIRGTFVPREKRPREEKPKPKPKKKETPA 123
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
+K + +A+QA + A G GAT G + P PPN +LFVQN+P
Sbjct: 124 KKPKDEASQAALAPGQAAPGG-GAT----------GPAAPPQPKPNPPNKLLFVQNLPDQ 172
Query: 183 TTPMALQMFFSQFPGFKE----------------------------------VRMVEAKP 208
TT + L M F Q+ V MV K
Sbjct: 173 TTELMLSMLFQQYAITTILNININITIVTTIVNSNNVAITIRLTTRLAIVFVVDMVPGKQ 232
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
GIAFVE+ EM+A VAM LQ KI L+ +++AKK
Sbjct: 233 GIAFVEFNSEMEAAVAMTGLQHFKITPTHLMVVSFAKK 270
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 165 EAPAPPNNILFVQN----VPHDTTPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDE 218
EA PPN L+V N V D AL FSQ+ ++ ++ G AFV + D
Sbjct: 2 EAEVPPNETLYVNNLNEKVKRDELRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDI 61
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
A+ A+++LQS + + I YAK
Sbjct: 62 GSASTALKALQSFAFYDKPMHIQYAK 87
>gi|302673457|ref|XP_003026415.1| hypothetical protein SCHCODRAFT_35516 [Schizophyllum commune H4-8]
gi|300100097|gb|EFI91512.1| hypothetical protein SCHCODRAFT_35516, partial [Schizophyllum
commune H4-8]
Length = 230
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 136/239 (56%), Gaps = 25/239 (10%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
EPE A + T+YI NLNEK+K+D +KQ+L +FK +G +L+++A + L+ +GQA
Sbjct: 4 EPEYACE--------TLYIQNLNEKIKVDIMKQTLRTLFKTYGEVLDVVAHRNLRMRGQA 55
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKG 120
++ F DV SA A +++GFP Y KPM+I +A+T+SD ++ K D + +++R E K
Sbjct: 56 FVSFADVNSARRAAREVRGFPLYTKPMQISFARTRSDAVVKKLDESQFDDHKKRREEHKR 115
Query: 121 KKR-----KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
K R K + A + + A+ +S +P ++P+ PPN ILF
Sbjct: 116 KTRYTNPLKQKLKAKRLAL-----------ASDGVSHLPATRRPNVLMPDEYLPPNKILF 164
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
+QN+P + L FSQ+P EVRMV K IAFVEY DE AT A +L + K+
Sbjct: 165 LQNLPETVSKDQLTALFSQYPNLHEVRMVPTKKDIAFVEYYDEASATNAKDALHNYKMD 223
>gi|347838217|emb|CCD52789.1| similar to u2 small nuclear ribonucleoprotein b'' [Botryotinia
fuckeliana]
Length = 252
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 135/245 (55%), Gaps = 18/245 (7%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+NNL E +K L ++L +F ++GTILEI+A LK KGQA++VF+DV SAT
Sbjct: 13 PNATLYVNNLEESIKPAALIEALTELFSEYGTILEIVAKTNLKAKGQAFIVFEDVESATK 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E +QGF + K MRI YAKT+SD K +G E KR K+RK A
Sbjct: 73 AIEDIQGFELFGKEMRIAYAKTRSDASVKREGGHEELEVHKRRRLAEKERK-----KAAE 127
Query: 134 MGLNPAYAGAYGATPPLSQIPYPG-----------GAKSVIPEAPAPPNNILFVQNVPHD 182
+ L P A L+ P A +V+P+ PPN ILFVQN+P +
Sbjct: 128 ITLRPTTGPALANPADLAARPIKATRGAGLKSSNPAAAAVVPDEYLPPNKILFVQNLPEE 187
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI-- 240
L F +F GF+EVR+V + GIAFVEY E + A ++ + +G +Q +I
Sbjct: 188 YDVDMLTSIFGRFEGFREVRLVPGRKGIAFVEYETETGSIGAKENTAGMALGDEQKVIKV 247
Query: 241 TYAKK 245
TY ++
Sbjct: 248 TYQRQ 252
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 164 PEAPAPPNNILFVQNVPHDTTPM----ALQMFFSQFPGFKEV---RMVEAKPGIAFVEYG 216
P PPN L+V N+ P AL FS++ E+ ++AK G AF+ +
Sbjct: 7 PSGSPPPNATLYVNNLEESIKPAALIEALTELFSEYGTILEIVAKTNLKAK-GQAFIVFE 65
Query: 217 DEMQATVAMQSLQSLKIGQQQLLITYAK 244
D AT A++ +Q ++ +++ I YAK
Sbjct: 66 DVESATKAIEDIQGFELFGKEMRIAYAK 93
>gi|121713748|ref|XP_001274485.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus clavatus NRRL
1]
gi|119402638|gb|EAW13059.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus clavatus NRRL
1]
Length = 1390
Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 9/234 (3%)
Query: 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79
+ NL E++K+DQLK++L +F ++G ILEI+A LK KGQA++VF DV SAT A++++
Sbjct: 1158 VRNLEERIKVDQLKEALAEIFSEYGNILEIVAKTNLKAKGQAFIVFDDVESATRAIDEVN 1217
Query: 80 GFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA 139
GF +DKPM + YAKTKSD +G E KR K+RK H+A +A L
Sbjct: 1218 GFDLFDKPMVLDYAKTKSDATVLREGGSEELEVHKRRRLAEKERKQAHEALEAQKKLKRP 1277
Query: 140 YAGAYGATPPLSQI------PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
G P + P G +VIP+ PPN ILF++++P +L F
Sbjct: 1278 -PGPVDTARPAKTVKGAGLKPTTGATAAVIPDEYLPPNKILFLRDLPDSADQDSLTAVFG 1336
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLITYAKK 245
+F GF+EVR+V + GIAFVEY +E A A ++ + +G + + +TY ++
Sbjct: 1337 RFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGDEGKPIRVTYQRQ 1390
>gi|212529316|ref|XP_002144815.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074213|gb|EEA28300.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 253
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 139/243 (57%), Gaps = 10/243 (4%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P N Y++NL E+VKID LK++L +F ++GTILEI+A K LK KGQA++VF +V SA
Sbjct: 11 NPPNPTYVHNLEERVKIDDLKEALTEIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESAQ 70
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+E++ GF KPM + +AKT+SD +G E KR K+RK +A +A
Sbjct: 71 RAIEEVNGFDLLGKPMSLDFAKTRSDATVLREGGSDELEVHKRKRLAEKERKQAQEALEA 130
Query: 133 GMGLN-------PAYAGAYGATPPLSQI-PYPGGAKSVIPEAPAPPNNILFVQNVPHDTT 184
L PA AG + + P G A +V+P+ PPN ILF++ +P D
Sbjct: 131 QKKLKRPAGVPVPAEAGRPAKAARGTGLKPTTGAATAVVPDEYLPPNKILFLRELPEDAD 190
Query: 185 PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITY 242
L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G + + +TY
Sbjct: 191 ADMLTSIFGRFEGFREVRLVPGRKGIAFVEYENETGAISAKEATSGMPMGPNAKPIRVTY 250
Query: 243 AKK 245
++
Sbjct: 251 QRQ 253
>gi|406864382|gb|EKD17427.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 253
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 140/241 (58%), Gaps = 10/241 (4%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N T+Y+ NL E +KI L +SL +F ++GTI++++A LK KGQA++VF +V SAT
Sbjct: 13 NATVYVRNLEESIKIPTLIESLKEIFSEYGTIIDVVAKANLKAKGQAFVVFDNVESATQC 72
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAK---ADGTFVPRERRKRHEEKGKKRKDQ-HDAN 130
+E++QGF + KPM++ +AKT+SD K D +RR+ E+ KK +Q +
Sbjct: 73 IEEVQGFDLFGKPMQLAFAKTRSDAFVKRTAGDDELESHKRRRLAEKDKKKAAEQAEELK 132
Query: 131 QAGMGLNPAYAGAYGATPPLSQI-----PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
+ P A GA P + GA +VIP+ PPN ILF+QN+P D
Sbjct: 133 RLKHTAPPGMAPDMGARPIKATRGAGLKSTNAGAAAVIPDEYLPPNKILFLQNLPEDYDV 192
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
+L F +F GF+EVR+V + GIAFVEY E+ A A ++ + +GQ Q++ +TY +
Sbjct: 193 DSLTAIFGRFEGFREVRLVPGRRGIAFVEYDAEVGAISAKENTAGMSLGQGQVMKVTYQR 252
Query: 245 K 245
+
Sbjct: 253 Q 253
>gi|340521610|gb|EGR51844.1| predicted protein [Trichoderma reesei QM6a]
Length = 298
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 140/239 (58%), Gaps = 9/239 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+Y++NL E+VK + L +L +F +FG +++I+A + LK KGQA++VF + ++A
Sbjct: 62 PISTVYVHNLEERVKPEVLTDALKTIFSEFGNVVDIVAKRNLKAKGQAFVVFDEPSAAHK 121
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E+++GF + KPMR+ A+ +SD + G+ + KRH + K ++ +A
Sbjct: 122 AIEEVEGFELFGKPMRVAMARMQSDKTVELHGSSEDLDAHKRHRQAEKDKRKALEAADEQ 181
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKS-------VIPEAPAPPNNILFVQNVPHDTTPM 186
L A AGA A P S+ P G KS V+P+ PPN ILFVQNVP +
Sbjct: 182 RQLKRAAAGASEARP--SKSVKPSGLKSTSAPASAVVPDEYLPPNKILFVQNVPDEYDVE 239
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
L F +F GF+E+R+V + GIAFVEY +E A A ++ + +G + + +TY ++
Sbjct: 240 GLTAIFGRFDGFREIRLVPGRRGIAFVEYENEQGAITAKENTAGMSLGDKMIKVTYQRQ 298
>gi|348683636|gb|EGZ23451.1| hypothetical protein PHYSODRAFT_484798 [Phytophthora sojae]
Length = 236
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 137/236 (58%), Gaps = 18/236 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ PN+T+Y+NNLN+K+K D++K +L+A Q G ILEI+ + + +GQAW+ F D+ S
Sbjct: 18 DVPPNHTLYLNNLNDKIKADRMKATLYASLSQHGKILEIVMGRARRLRGQAWVTFDDIPS 77
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ + G +DKP+ I +AK K+D+IA+ +G+FVPRE+RKR + ++++
Sbjct: 78 ASNALRAVNGSVLFDKPVVIHFAKEKADVIARREGSFVPREKRKRDPKPAQQQQQAKKQA 137
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
G + + P A PN ILF++ +P L +
Sbjct: 138 GEGGAAGSSGS-----------------VPPPPPPAQNVPNKILFLEALPESCNKEMLSV 180
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+ GFKEVRMV K G+AFVE+GDE QA +A+Q L K+ L +++AKK
Sbjct: 181 LFKQYQGFKEVRMVPGKKGLAFVEFGDEAQAAIALQGLFGFKLTPTDALKVSFAKK 236
>gi|326472389|gb|EGD96398.1| U1 small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
Length = 267
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 144/260 (55%), Gaps = 23/260 (8%)
Query: 9 GNEISPNNT-----------IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH 57
G+ I PN T +Y+ NL E++K++QLK++L +F ++G+ILEI+A LK
Sbjct: 8 GSSIPPNPTFVFSFPLKKWELYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKA 67
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
KGQA++VF +V SAT A++++ GF ++KPM ++YAKTKSD +G E KR
Sbjct: 68 KGQAFIVFDNVDSATRAIDEVNGFELFEKPMVLEYAKTKSDATVMREGGDEELEVHKRRR 127
Query: 118 EKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQ----------IPYPGGAKSVIPEAP 167
K+RK +A +A L A A P S+ P A VIP+
Sbjct: 128 LAEKERKQAQEALEAQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGTAAAPVIPDEY 187
Query: 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQS 227
PPN ILF++ +P L F +FPGFKEVRMV + GIAFVEY +E A A ++
Sbjct: 188 LPPNKILFLRELPESYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEA 247
Query: 228 LQSLKIGQQQ--LLITYAKK 245
+ +G+ + + +TY ++
Sbjct: 248 TSGMALGENEKPIKVTYQRQ 267
>gi|70997421|ref|XP_753458.1| U1 small nuclear ribonucleoprotein [Aspergillus fumigatus Af293]
gi|66851094|gb|EAL91420.1| U1 small nuclear ribonucleoprotein, putative [Aspergillus fumigatus
Af293]
gi|159126813|gb|EDP51929.1| U1 small nuclear ribonucleoprotein, putative [Aspergillus fumigatus
A1163]
Length = 255
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 137/236 (58%), Gaps = 7/236 (2%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T + NL E++K+DQLK +L +F ++G I+EI+A LK KGQA++VF +V SAT A+E
Sbjct: 20 TKQVRNLEERIKVDQLKVALEEIFSEYGNIVEIVAKTNLKAKGQAFIVFDNVESATRAIE 79
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
++ GF +DKPM + YAKTKSD +G E KR K+RK H+A +A L
Sbjct: 80 EVNGFELFDKPMVLDYAKTKSDATVLREGGTEELEVHKRRRLAEKERKQAHEALEAQKKL 139
Query: 137 NPAYAGAYGATPPLS-----QIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMF 191
A A P + P G A +VIP+ PPN ILF++++P +L
Sbjct: 140 KRPPGPADTARPAKTVKGAGLKPTSGAAAAVIPDEYLPPNKILFLRDLPDTADQESLTAI 199
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAKK 245
F +F GF+EVR+V + GIAFVEY +E A A ++ ++ +G + + +TY ++
Sbjct: 200 FGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATANMPMGDNGKPIRVTYQRQ 255
>gi|302662086|ref|XP_003022702.1| hypothetical protein TRV_03163 [Trichophyton verrucosum HKI 0517]
gi|291186662|gb|EFE42084.1| hypothetical protein TRV_03163 [Trichophyton verrucosum HKI 0517]
Length = 267
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 138/241 (57%), Gaps = 12/241 (4%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T Y+ NL E++K++QLK++L +F ++G+ILEI+A LK KGQA++VF +V SAT A++
Sbjct: 27 TSYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAID 86
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
++ GF ++KPM ++YAKTKSD +G E KR K+RK +A +A L
Sbjct: 87 EVNGFELFEKPMVLEYAKTKSDATVMREGGDEELEAHKRRRLAEKERKQAQEALEAQKKL 146
Query: 137 NPAYAGAYGATPPLSQ----------IPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
A A P S+ P A VIP+ PPN ILF++ +P
Sbjct: 147 KRPAGAAGTAGGPDSRPAKAQKGAGLKPTGAAAAPVIPDEYLPPNKILFLRELPETYDAD 206
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAK 244
L F +FPGFKEVRMV + GIAFVEY +E A A ++ + +G+ + + +TY +
Sbjct: 207 GLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMALGENEKPIKVTYQR 266
Query: 245 K 245
+
Sbjct: 267 Q 267
>gi|393233936|gb|EJD41503.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 249
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 138/231 (59%), Gaps = 8/231 (3%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNEK+KI +KQ+L +FK +G +L+++A ++ +GQA++ F+ A A++
Sbjct: 25 TLYIQNLNEKIKITVMKQTLKNLFKSYGNVLDVVAHSNIRMRGQAFVSFESKDIARKALK 84
Query: 77 KMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
+++GFP Y KPM++ +AKT+SD ++ K D + +++R E K +R H+ +
Sbjct: 85 EVKGFPLYSKPMQVSFAKTRSDAVVQKLDADHLEEHKKERLEHKRTQR--WHNPHARKAR 142
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQF 195
GA P +P ++P+ PPN ILF+QN+P T L FSQ+
Sbjct: 143 AKRKAEKVDGAAP----VPATKRPNVLMPDEYLPPNKILFLQNLPDSVTKDQLVTLFSQY 198
Query: 196 PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
P EVR++ K IAFVEY DE ATVA ++L + K+ G+ ++ +T+A+K
Sbjct: 199 PNLHEVRLIPTKKDIAFVEYVDEGSATVAKEALHNYKLDGETKIKVTFARK 249
>gi|261191117|ref|XP_002621967.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591011|gb|EEQ73592.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239613076|gb|EEQ90063.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 253
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 140/240 (58%), Gaps = 11/240 (4%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
VA + I+PN+T+Y+ NL E++K++ LK++L +F ++G I++I+A LK KGQA++V
Sbjct: 4 VAASASGIAPNSTVYVRNLEERIKVEPLKEALAEIFSEYGNIIDIVAKTNLKAKGQAFIV 63
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADG-TFVPRERRKRHEEKGKK 122
F +V SAT A+E++ GF ++KPM + YA+T+SD I+ K G T + +RKR E K+
Sbjct: 64 FDNVDSATRAIEEINGFELFEKPMVLDYARTRSDAIVLKEHGETELEAHKRKRLAE--KE 121
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQI-------PYPGGAKSVIPEAPAPPNNILF 175
RK +A +A L A G S++ P A VI + PPN ILF
Sbjct: 122 RKQAQEALEAQKKLKRGVAAPGGPEARPSKVTRGAGLKPSTATAAPVIQDEYLPPNKILF 181
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
++ +P L F +F GFKEVRMV + GIAFVEY E A A ++ + +G+
Sbjct: 182 LREIPDSLDQDGLTEIFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGE 241
>gi|225561807|gb|EEH10087.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus G186AR]
Length = 249
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 144/252 (57%), Gaps = 17/252 (6%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
VA + ++PN+TIY+ NL E++KI+ LK++L +F ++G I++I+A LK KGQA++V
Sbjct: 4 VAATASGVAPNSTIYVRNLEERIKIESLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVV 63
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD--IIAKADGTFVPRERRKRHEEKGKK 122
F +V SAT A+E++ GF ++KPM + YAKT+SD ++ + + +RKR EK
Sbjct: 64 FDNVDSATRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEAELEAHKRKRLAEKA-- 121
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQI-------PYPGGAKSVIPEAPAPPNNILF 175
+A +A L A GA S++ P A VIP+ PPN ILF
Sbjct: 122 ----QEALEAQKKLKRGAAAPGGAETRPSKVTRGTGLKPSNAAAAPVIPDEYLPPNKILF 177
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
++ +P L F +F GFKEVRMV + GIAFVEY E A A ++ + +G+
Sbjct: 178 LREIPDSLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGE 237
Query: 236 --QQLLITYAKK 245
+ + +TY ++
Sbjct: 238 NGKPIRVTYQRQ 249
>gi|242763791|ref|XP_002340645.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723841|gb|EED23258.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 254
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 142/243 (58%), Gaps = 11/243 (4%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P N Y++NL E+VKID+LK++L A+F ++GTILEI+A K LK KGQA++VF +V SA
Sbjct: 12 PPNPTYVHNLEERVKIDELKEALTAIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESAQR 71
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSD--IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
A+E++ GF KPM + +AKT+SD ++ +A + +RKR EK +K + Q
Sbjct: 72 AIEEVNGFDLLGKPMHLDFAKTRSDATVLREAGSEELEAHKRKRLAEKERKHAQEALEAQ 131
Query: 132 ------AGMGLNPAYAGAYGATPPLSQI-PYPGGAKSVIPEAPAPPNNILFVQNVPHDTT 184
AG+ PA AG + + P +VIP+ PPN ILF++ +P D
Sbjct: 132 KKLKRPAGVVPVPAEAGRPAKAARGTGLKPTSAATTAVIPDEYLPPNKILFLRELPEDAD 191
Query: 185 PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITY 242
L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G + + +TY
Sbjct: 192 SDMLAGIFGRFEGFREVRLVPGRKGIAFVEYENEAGAISAKEATSGMPMGPNAKPIRVTY 251
Query: 243 AKK 245
++
Sbjct: 252 QRQ 254
>gi|429864037|gb|ELA38421.1| u1 small nuclear [Colletotrichum gloeosporioides Nara gc5]
Length = 247
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 137/247 (55%), Gaps = 18/247 (7%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P T+Y+ NL E+ KIDQLK +L +F ++G +L+I+A L+ KGQA++VF SA
Sbjct: 5 APITTVYVRNLEERAKIDQLKDALLQIFSEYGNVLDIVAKSNLRAKGQAFVVFDSPESAQ 64
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE--RRKRHEEKGKKRKDQHDAN 130
A++ +QGF +DKPM++ A+T+SD K G E +R+R EK KKR +
Sbjct: 65 KAIDDVQGFELFDKPMQLALARTRSDATVKTTGNEEEFELHKRRRLAEKDKKRAYEAAEE 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGG-----------AKSVIPEAPAPPNNILFVQNV 179
Q + +G G+ P ++ P A +V+P+ PPN ILFVQN+
Sbjct: 125 QKRL----KRSGPAGSVPDMTGRPAKAARGTGLKSTNPSATAVVPDEYLPPNKILFVQNL 180
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239
P D A+ F +F GF+EVR+V + GIAFVEY E A A ++ + +G +
Sbjct: 181 PDDYDIEAVTSIFGRFEGFREVRLVPGRRGIAFVEYDGEQGAITAKENTAGMVLGDSHTI 240
Query: 240 -ITYAKK 245
+TY ++
Sbjct: 241 KVTYQRQ 247
>gi|345570654|gb|EGX53475.1| hypothetical protein AOL_s00006g341 [Arthrobotrys oligospora ATCC
24927]
Length = 255
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 134/238 (56%), Gaps = 17/238 (7%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P++T+Y NL E VKI L +L +F Q+GTILEI+A K L+ +GQA++VF +A
Sbjct: 4 PSSTVYCRNLEESVKIPVLTATLETLFSQYGTILEIIAKKNLRARGQAFVVFDSPEAAER 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A++++QGF ++KPM +QYAKTKSD + + + E KR K+RK A +A
Sbjct: 64 AIKEVQGFNLFEKPMVLQYAKTKSDATVQLESSETEFEAHKRRRLAEKERKQALRAAEAQ 123
Query: 134 MGL-NPAYAG---AYGATP------PLSQIPYPGGAKSV-------IPEAPAPPNNILFV 176
L PA +G GA +S PGG KS IP+ PPN ILF+
Sbjct: 124 KHLKRPAASGPSQGIGADSRPAKKTQISAPSAPGGLKSTAAPAAPQIPDEYLPPNKILFL 183
Query: 177 QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
QN+P + T L F F GFKEVR+V + GIAFVEY +E A A ++ Q + +G
Sbjct: 184 QNLPDNATSDILNGIFGSFEGFKEVRLVPGRKGIAFVEYENEAGAISAKENTQGMSLG 241
>gi|313219885|emb|CBY30800.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 143/282 (50%), Gaps = 51/282 (18%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
NN+IYINN++EK+KI L L A+F+QFG ILEI A K L+ +GQA++VF++V SA A
Sbjct: 36 NNSIYINNISEKIKIQTLLTELQAIFEQFGNILEIHAKKNLRMRGQAFIVFEEVESAQKA 95
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR------------------- 115
V MQGFPF+DK MRI +AK SD+IAK GTFV ++R K+
Sbjct: 96 VNSMQGFPFHDKKMRIAFAKRDSDLIAKKKGTFVEKDRSKKDKKKKKKKDKKVNPMQAMM 155
Query: 116 ------------------------HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATP--- 148
+ + K Q AN M GA A P
Sbjct: 156 SMMNPQMMMQMQKMMAQGGMQGGMNMQAMAKMMPQMQANMQKMMTQMQGGGAPAAVPGVA 215
Query: 149 PLSQIPYPGGAKS---VIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
P + +P P + +PE NNI+FVQ++P + L F+QF F EVRM
Sbjct: 216 PGAAVPLPSAVPAPNMGLPEGKFGSNNIIFVQDLPEEVDEKMLTALFNQFDNFMEVRMAP 275
Query: 206 AKPG-IAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+K G AF+EY +E A A +LQ K+ QL IT+AKK
Sbjct: 276 SKTGRAAFIEYTNERSAANAKDTLQGFKVTPTTQLKITFAKK 317
>gi|409052167|gb|EKM61643.1| hypothetical protein PHACADRAFT_248371 [Phanerochaete carnosa
HHB-10118-sp]
Length = 267
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 137/240 (57%), Gaps = 18/240 (7%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
S T+YI NLNEK+K+ LK SL +FK +G +L+++A L+ +GQA++ F++ A
Sbjct: 39 SATETLYIQNLNEKIKVPVLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFENAEVAK 98
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKA------DGTFVPRERRKRHEEKGKKRKDQ 126
A+++++GFP Y KPM+I YA+T+SD + K D ERRK H +K + +
Sbjct: 99 KALKEVRGFPLYSKPMQISYARTRSDAVVKKLEPATLDAHL---ERRKEH-KKATRYTNP 154
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
A L GA S +P ++P+ PPN ILF+QN+P + T
Sbjct: 155 IKAKFRQKRLAAEMDGA-------SAVPVSRRPNVMMPDEYLPPNKILFLQNLPENVTKD 207
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
L FSQ+P EVR++ K IAFVEY DE ATVA +L + K+ G+ ++ IT+A+K
Sbjct: 208 QLMALFSQYPNLYEVRLIPTKKDIAFVEYLDEASATVAKDALHNYKLDGENKIKITFARK 267
>gi|226294088|gb|EEH49508.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides brasiliensis
Pb18]
Length = 253
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 15/246 (6%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN+T+Y+ NL E++K++ LK++L +F ++G I++I+A LK KGQA++VF +V SA
Sbjct: 11 IPPNSTVYVQNLEERIKVEPLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSA 70
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSD---IIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
T A+E++ GF ++KPM + YAKT+SD + + +G +RR+ E K+RK +
Sbjct: 71 TRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEGELEAHKRRRLAE---KERKQAQE 127
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQI-------PYPGGAKSVIPEAPAPPNNILFVQNVPH 181
A +A L GA S+ P A VIP+ PPN ILF++ +P
Sbjct: 128 ALEAQKKLKRGVVAPGGAEARPSKAVKGAGLKPSNAAAAPVIPDEYLPPNKILFLREIPD 187
Query: 182 DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL--L 239
L F +F GFKEVRMV + GIAFVEY E A A ++ + +G+ +
Sbjct: 188 SLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGMPIR 247
Query: 240 ITYAKK 245
+TY ++
Sbjct: 248 VTYQRQ 253
>gi|219121341|ref|XP_002185896.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582745|gb|ACI65366.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 226
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 145/237 (61%), Gaps = 19/237 (8%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ PNNT+Y+ NL+ KVK + LK++L+A+F ++G +LE++A + +GQA+++F+DV +A
Sbjct: 6 LQPNNTLYVKNLDWKVKKNLLKRALYALFTRYGKVLEVVALRKDGLRGQAFVIFEDVQAA 65
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQH--DA 129
TAA++ +QGFPF+ K + ++YA+ SD IAK DG++VP+ RR KK DQ+ D+
Sbjct: 66 TAALQALQGFPFFGKDVALEYARETSDRIAKRDGSYVPKARRI------KKALDQNETDS 119
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
++A N PP +P P+ APP+ L QN+P D M L
Sbjct: 120 SEANKQDNHQAKEESAVAPPEGDMPS--------PQDTAPPSKYLLAQNLPSDCNEMMLG 171
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
M F Q+ G+KEVRM +PG+AF+E+ DE AT+A +L K+ + L + Y K+
Sbjct: 172 MLFRQYSGYKEVRM--PRPGLAFIEFEDEPHATLARNALNGFKLTTSESLQLGYGKE 226
>gi|295670367|ref|XP_002795731.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284816|gb|EEH40382.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 253
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 141/246 (57%), Gaps = 15/246 (6%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN+T+Y+ NL E++K++ LK++L +F ++G I++++A LK KGQA++VF +V SA
Sbjct: 11 IPPNSTVYVQNLEERIKVEALKEALTEIFSEYGNIIDLVAKTNLKAKGQAFIVFDNVDSA 70
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSD---IIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
T A+E++ GF ++KPM + YAKT+SD + + +G +RR+ E K+RK +
Sbjct: 71 TRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEGELEAHKRRRLAE---KERKQAQE 127
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQI-------PYPGGAKSVIPEAPAPPNNILFVQNVPH 181
A +A L GA S+ P A VIP+ PPN ILF++ +P
Sbjct: 128 ALEAQKKLKRGVVAPGGAEARPSKAAKGAGLKPSNAAAAPVIPDEYLPPNKILFLREIPD 187
Query: 182 DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLL 239
L F +F GFKEVRMV + GIAFVEY E A A ++ + +G+ + +
Sbjct: 188 SLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGKPIR 247
Query: 240 ITYAKK 245
+TY ++
Sbjct: 248 VTYQRQ 253
>gi|313232389|emb|CBY24056.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 143/282 (50%), Gaps = 51/282 (18%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
NN+IYINN++EK+KI L L A+F+QFG ILEI A K L+ +GQA++VF++V SA A
Sbjct: 36 NNSIYINNISEKIKIQTLLTELQAIFEQFGNILEIHAKKNLRMRGQAFIVFEEVESAQKA 95
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR------------------- 115
V MQGFPF+DK MRI +AK SD+IAK GTFV ++R K+
Sbjct: 96 VNSMQGFPFHDKKMRIAFAKRDSDLIAKKKGTFVEKDRSKKDKKKKKKKDKKVNPMQAMM 155
Query: 116 ------------------------HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATP--- 148
+ + K Q AN M GA A P
Sbjct: 156 SMMNPQMMMQMQKMMAQGGMQGGMNMQAMAKMMPQMQANMQKMMSQMQGGGAPAAVPGVA 215
Query: 149 PLSQIPYPGGAKS---VIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
P + +P P + +PE NNI+FVQ++P + L F+QF F EVRM
Sbjct: 216 PGAAVPLPSAVPAPNMGLPEGKFGSNNIIFVQDLPEEVDEKMLTALFNQFDNFMEVRMAP 275
Query: 206 AKPG-IAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+K G AF+EY +E A A +LQ K+ QL IT+AKK
Sbjct: 276 SKTGRAAFIEYTNERSAANAKDTLQGFKVTPTTQLKITFAKK 317
>gi|408395814|gb|EKJ74987.1| hypothetical protein FPSE_04807 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 9/237 (3%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
+T+Y+ NL E+VK++ L +L +F +FG +++I+A K L+ KGQA++V+ + SA A+
Sbjct: 8 STVYVQNLEERVKLETLVDALRTIFSEFGNVVDIVAKKNLRAKGQAFIVYDNAESAQEAI 67
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
E++ GF +DKPM++ A+++SD + G+ E KRH + K ++ +A +
Sbjct: 68 EEINGFDLFDKPMKLALARSRSDKTVELTGSQEELENHKRHRQAEKDKRKAEEAAEEQRQ 127
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-------PPNNILFVQNVPHDTTPMAL 188
N +GA P +++ G KS A PPN ILFVQN P D AL
Sbjct: 128 SNKRASGATDNRP--AKVAKSSGLKSTSAAAATSVLDEFLPPNKILFVQNFPEDYDVEAL 185
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F +F G +EVR+V + GIAF+EY E A A ++ L +G + + +TY ++
Sbjct: 186 TSVFGRFEGLREVRLVPTRRGIAFIEYETEQGAITAKENTAGLNLGDKPIKVTYQRQ 242
>gi|310798243|gb|EFQ33136.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 246
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 136/241 (56%), Gaps = 9/241 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NL E+ K+DQLK +L +F ++G +++I+A LK KGQA++VF D +A
Sbjct: 6 PIATVYVRNLEERAKVDQLKDALLQIFSEYGNVIDIVAKTNLKAKGQAFVVFDDPEAARK 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E++QGF ++KPM++ A+T+SD KA G E KR K +K ++A +
Sbjct: 66 AIEEVQGFELFEKPMQLSLARTRSDATVKASGNDEEFELHKRRRLAEKDKKKAYEAAEEQ 125
Query: 134 MGL-NPAYAGAYGATPPLSQIPYPGGAKS-------VIPEAPAPPNNILFVQNVPHDTTP 185
L P GA + ++ G KS VIP+ PPN ILFVQN+P D
Sbjct: 126 KRLKRPGPGGATASDNRPTKAARGAGLKSTNPSTTAVIPDEYLPPNKILFVQNLPEDYDI 185
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
A+ F +F GF+EVR+V + GIAFVEY E A A ++ + +G + +TY +
Sbjct: 186 DAVTSIFGRFEGFREVRLVPGRRGIAFVEYDGEQGAITAKENTAGMVLGDTYTIKVTYQR 245
Query: 245 K 245
+
Sbjct: 246 Q 246
>gi|449541608|gb|EMD32591.1| hypothetical protein CERSUDRAFT_118631 [Ceriporiopsis subvermispora
B]
Length = 272
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 139/233 (59%), Gaps = 8/233 (3%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
+ T+YI NLNEK+KI LKQSL ++FK +G +L+++A L+ +GQA++ F SA A
Sbjct: 46 SETLYIQNLNEKIKIPVLKQSLRSLFKTYGEVLDVVAHSNLRMRGQAFVSFDSAESAQKA 105
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
+++++GFP Y KPM+I +A+++SD ++ + D + +R E+K + R +
Sbjct: 106 LKEVRGFPLYSKPMQISFARSRSDAVVKRLDANNYDAHKARRMEQKKQTRYTNPLKRKFR 165
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
A GA P+S+ P +P+ PPN ILF+QN+P + L FS
Sbjct: 166 QRRLAAEVDGAGAV-PVSKRP-----NVQMPDEYLPPNKILFLQNLPESVSKDQLMALFS 219
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
Q+P EVR++ K IAFVEY DE ATVA ++L + K+ G+ ++ IT+A+K
Sbjct: 220 QYPNLHEVRLIPTKKDIAFVEYLDEGSATVAKEALHNYKLDGENKIKITFARK 272
>gi|302511081|ref|XP_003017492.1| hypothetical protein ARB_04373 [Arthroderma benhamiae CBS 112371]
gi|291181063|gb|EFE36847.1| hypothetical protein ARB_04373 [Arthroderma benhamiae CBS 112371]
Length = 240
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 137/240 (57%), Gaps = 12/240 (5%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+ + NL E++K++QLK++L +F ++G+ILEI+A LK KGQA++VF +V SAT A+++
Sbjct: 1 MLVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDE 60
Query: 78 MQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLN 137
+ GF ++KPM ++YAKTKSD +G E KR K+RK +A +A L
Sbjct: 61 VNGFELFEKPMVLEYAKTKSDATVMREGGDEELEAHKRRRLAEKERKQAQEALEAQKKLK 120
Query: 138 PAYAGAYGATPPLSQ----------IPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
A A P S+ P A VIP+ PPN ILF++ +P
Sbjct: 121 RPAGAAGTAGGPDSRPAKAQKGAGLKPTGAAAAPVIPDEYLPPNKILFLRELPETYDADG 180
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
L F +FPGFKEVRMV + GIAFVEY +E A A ++ + +G+ + + +TY ++
Sbjct: 181 LSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMALGENEKPIKVTYQRQ 240
>gi|46116888|ref|XP_384462.1| hypothetical protein FG04286.1 [Gibberella zeae PH-1]
Length = 242
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 133/237 (56%), Gaps = 9/237 (3%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
+T+Y+ NL E+VK++ L +L +F +FG +++I+A K L+ KGQA++V+ + SA A+
Sbjct: 8 STVYVQNLEERVKLETLVDALRTIFSEFGNVVDIVAKKNLRAKGQAFIVYDNAESAQEAI 67
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
E++ GF +DKPM++ A+++SD + G+ E KRH + K ++ +A +
Sbjct: 68 EEINGFDLFDKPMKLALARSRSDKTVELTGSQEELENHKRHRQAEKDKRKAEEAAEEQRQ 127
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-------PPNNILFVQNVPHDTTPMAL 188
N +GA P ++ G KS A PPN ILFVQN+P D AL
Sbjct: 128 SNKRASGATDNRP--AKAAKSSGLKSTSAAAATSVLDEFLPPNKILFVQNLPEDYDIEAL 185
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F +F G +EVR+V + GIAF+EY E A A ++ L +G + + +TY ++
Sbjct: 186 TSVFGRFEGLREVRLVPTRRGIAFIEYETEQGAITAKENTAGLNLGDKPIKVTYQRQ 242
>gi|336365379|gb|EGN93730.1| hypothetical protein SERLA73DRAFT_189480 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377939|gb|EGO19099.1| hypothetical protein SERLADRAFT_480314 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 143/251 (56%), Gaps = 26/251 (10%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
EPEV ++ T+YI NLNEK+KID LK SL +FK +G +L+++A L+ +GQA
Sbjct: 31 EPEVISE--------TLYIQNLNEKIKIDVLKASLRGLFKSYGEVLDVVAHGNLRMRGQA 82
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKG 120
++ F A A+++++GFP Y KPM+I +A+T+SD ++ + +G + + +R E K
Sbjct: 83 FVSFDSAEVAKKAMKEVRGFPLYSKPMQISFARTRSDAVVKRLEGETFEQHKARRAEHKK 142
Query: 121 KKR-----KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
R K + A + ++ G T +P P +P+ PPN ILF
Sbjct: 143 NTRYSNPLKQKFRAKRMAAEMD-------GVT----AVPAPKRPNVQMPDEYLPPNKILF 191
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-G 234
+QN+P + T L FSQ+P EVR++ K IAFVEY DE A VA +L + K+ G
Sbjct: 192 LQNLPENVTKDQLMALFSQYPNLYEVRLIPTKKDIAFVEYIDEGSAGVAKDALHNYKLDG 251
Query: 235 QQQLLITYAKK 245
+ ++ IT+A+K
Sbjct: 252 ENKIKITFARK 262
>gi|403411353|emb|CCL98053.1| predicted protein [Fibroporia radiculosa]
Length = 271
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 18/238 (7%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
+ T+YI NLNEK++I LK SL +FK +G +L+++A L+ +GQA++ F +A A
Sbjct: 45 SETLYIQNLNEKIRIPVLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFDSAEAAKKA 104
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKR-----KDQHD 128
+++++GFP Y KPM+I +A+T+SD ++ K D + +R E K R K ++
Sbjct: 105 LKEVRGFPLYSKPMQISFARTRSDAVVKKLDSVHYEEHKARRMEYKKSTRYTNPLKRKYR 164
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
A + ++ A A P+S+ P +P+ PPN ILF+QN+P + L
Sbjct: 165 ARKMAAEMDGAGAA------PVSKRP-----NVQMPDEYLPPNKILFLQNLPESVSKDQL 213
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
FSQ+P EVR++ K IAFVEY DE ATVA +L + K+ G+ ++ IT+A+K
Sbjct: 214 MALFSQYPNLHEVRLIPTKKDIAFVEYMDEGSATVAKDALHNYKLDGENKIKITFARK 271
>gi|389742376|gb|EIM83563.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 274
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 147/254 (57%), Gaps = 22/254 (8%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
+ PE G + + T+YI NLNEK++I+ LK SL +FK +G +L+++A L+ +GQ
Sbjct: 34 LAPEQTPAGPAETVSETLYIQNLNEKIRIEVLKNSLRGLFKSYGEVLDVVAHNNLRMRGQ 93
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVP--RERRKRHE 117
A++ F+ A A+++++GFP Y KPM+I +A+T+SD ++ K D T +E R +H+
Sbjct: 94 AFVSFESPEIAAKALKEVKGFPLYSKPMQISFARTRSDAVVKKLDATNFDQHKEHRLQHK 153
Query: 118 EKGK-----KRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172
++ + KRK + + M GAT P P +P+ PPN
Sbjct: 154 KETRYTNPIKRKFREKRVASEMD---------GAT----SAPAPKRPNVQMPDEYLPPNK 200
Query: 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
ILF+QN+P T L+ F+Q+P EVR++ K IAFVEY DE ATVA +L + K
Sbjct: 201 ILFLQNLPESVTKPQLEALFTQYPNLHEVRLIPTKKDIAFVEYVDEGSATVAKDALHNYK 260
Query: 233 I-GQQQLLITYAKK 245
+ G+ ++ IT+A+K
Sbjct: 261 LDGENKIKITFARK 274
>gi|358378115|gb|EHK15797.1| hypothetical protein TRIVIDRAFT_195742 [Trichoderma virens Gv29-8]
Length = 242
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 135/237 (56%), Gaps = 5/237 (2%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+Y+ NL E+VK + L ++L +F +FG +++I+A + LK KGQA++VF +A
Sbjct: 6 PISTVYVQNLEERVKPEVLAEALKTIFSEFGNVVDIVAKRNLKAKGQAFIVFDQPGAAHN 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E+++GF + KPMR+ A+ +SD + + E KRH + K ++ +A
Sbjct: 66 AIEEVEGFELFGKPMRVAMARMQSDKTVEMNCNTDEFEAHKRHRQAEKDKRKALEAADEQ 125
Query: 134 MGLNPAYAGAYGATP-----PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
L A GA A P PL A +V+P+ PPN ILF+QNVP + AL
Sbjct: 126 RHLKRAAGGAPEARPSKSAKPLGLKSTSAPASAVVPDEYLPPNKILFIQNVPDEYDVDAL 185
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F +F GF+E+R+V + GIAFVEY +E A A ++ + +G + + +TY ++
Sbjct: 186 NAVFGRFDGFREIRLVPGRRGIAFVEYENEQGAITAKENTAGMALGDKPIKVTYQRQ 242
>gi|367045436|ref|XP_003653098.1| hypothetical protein THITE_2115135 [Thielavia terrestris NRRL 8126]
gi|347000360|gb|AEO66762.1| hypothetical protein THITE_2115135 [Thielavia terrestris NRRL 8126]
Length = 248
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 136/242 (56%), Gaps = 10/242 (4%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NL E+VK + LKQ+L AVF ++G +++I+A LK KGQA++VF SA A
Sbjct: 7 PIATVYVRNLEERVKPEPLKQALRAVFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESALA 66
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGT--FVPRERRKRHEEKGKKRKDQHDANQ 131
A+E++QGF ++KPM++ A+T+SD GT +R+R EK KK+ + Q
Sbjct: 67 AIEEVQGFELFEKPMQVALARTRSDATVMLHGTEEEFDAHKRRRMAEKDKKKALESAEEQ 126
Query: 132 AGMGLNPAYAGAYGATPPLSQIPYPG------GAKSVIPEAPAPPNNILFVQNVPHDTTP 185
+ AGA P G G +V+P+ PPN ILFVQN+P D
Sbjct: 127 KRLKRPMPGAGAEVGARPAKNARGAGLKATGAGPAAVVPDEYLPPNRILFVQNLPDDFDK 186
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL--QSLKIGQQQLLITYA 243
AL F F GF+EVR V + GIAFVEY E A A ++ +LK G++ + +TY
Sbjct: 187 DALTAIFGHFEGFREVRTVPGRSGIAFVEYETEAGAITAKENTAGMALKGGEKIMKVTYQ 246
Query: 244 KK 245
++
Sbjct: 247 RQ 248
>gi|449295579|gb|EMC91600.1| hypothetical protein BAUCODRAFT_38709 [Baudoinia compniacensis UAMH
10762]
Length = 239
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 138/242 (57%), Gaps = 4/242 (1%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
+++ G+EI P+ TIYI NL+E VK+ L +L +F+ FG I++I+A K++K KGQA++V
Sbjct: 1 MSDDGDEIPPSATIYIKNLDEDVKLTTLVPALRELFEDFGNIIDIVAKKSVKRKGQAFIV 60
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKR 123
+ V +A A ++M F + KPM I++AKT+SD + + +G E E K++
Sbjct: 61 YDSVDAAQDAKDEMNSFEIFGKPMHIEFAKTRSDATVLRENGEEALEEHMTARLEVKKRK 120
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
+D+ A +++ P G ++PE PPN IL+++++P D
Sbjct: 121 QDEEAEKAKAAAKRVATETLAERPAKAAKVAQPAG---IVPEEYLPPNKILYLRDLPEDY 177
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243
AL +S+FPGFKEVR V + IAFVEY DE A A + + +G+Q + +T+
Sbjct: 178 GKDALTAIYSRFPGFKEVRTVPTRKTIAFVEYDDESGAIAAKDATGGMTLGEQAIKVTFQ 237
Query: 244 KK 245
+K
Sbjct: 238 RK 239
>gi|367022286|ref|XP_003660428.1| hypothetical protein MYCTH_2314150 [Myceliophthora thermophila ATCC
42464]
gi|347007695|gb|AEO55183.1| hypothetical protein MYCTH_2314150 [Myceliophthora thermophila ATCC
42464]
Length = 247
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 138/239 (57%), Gaps = 10/239 (4%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+ NL E+VK + LK++L AVF +FG +++I+A LK KGQA++VF SA AA+E
Sbjct: 9 TVYVRNLEERVKPEPLKEALRAVFSEFGNVIDIVAKTNLKAKGQAFVVFDKPESAHAAIE 68
Query: 77 KMQGFPFYDKPMRIQYAKTKSD--IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG- 133
++QGF ++KPM++ A+T+SD ++ + +R+R EK KK+ + Q
Sbjct: 69 EVQGFELFEKPMQVALARTRSDATVLRTGNAEEFDAHKRRRIAEKDKKKALESAEEQKRL 128
Query: 134 ---MGLNPAYAGAYGATPPLSQ--IPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
M PA AGA A GG +V+P+ PPN ILFVQN+P D AL
Sbjct: 129 KRPMPGGPAEAGARPAKNARGAGLKSTGGGPAAVVPDEYLPPNRILFVQNLPDDMDKDAL 188
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLITYAKK 245
F +F GF+EVR V + GIAFVEY E A A ++ LK G++ + +TY ++
Sbjct: 189 TAIFGRFEGFREVRTVPGRSGIAFVEYEAEAGAITAKENTAGMPLKNGEKLMKVTYQRQ 247
>gi|440639249|gb|ELR09168.1| hypothetical protein GMDG_03746 [Geomyces destructans 20631-21]
Length = 288
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 143/244 (58%), Gaps = 12/244 (4%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ T+Y+ NL E +K+DQLK++L +F ++G I++I+A LK KGQA++VF V SA
Sbjct: 45 PSATVYVRNLEEHIKVDQLKEALTELFSEYGEIIDIVAKTNLKAKGQAFVVFDTVESAQK 104
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE--RRKRHEEKGKKRKDQ--HDA 129
A++++QGF ++KPM++ +AKT+SD K G E +RKR EK KK+ + +A
Sbjct: 105 AIDEVQGFELFEKPMQLAFAKTRSDATVKRTGDEEEYESHKRKRLAEKDKKKSAEAAEEA 164
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS------VIPEAPAPPNNILFVQNVPHDT 183
+ + + A A + P+ G S V+P+ PPN ILFVQNVP +
Sbjct: 165 KKLKIAVAAAGNAADMTSRPIKATRGAGLRSSNAATSVVVPDEYLPPNKILFVQNVPDEY 224
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLIT 241
AL F +F GF+EVR+V + GIAFVEY E A A ++ + +G+ Q + +T
Sbjct: 225 DIDALTSIFGRFEGFREVRLVPGRRGIAFVEYEAEAGAISAKENTAGVALGEAGQAIKVT 284
Query: 242 YAKK 245
Y ++
Sbjct: 285 YQRQ 288
>gi|326428976|gb|EGD74546.1| hypothetical protein PTSG_05910 [Salpingoeca sp. ATCC 50818]
Length = 215
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 132/233 (56%), Gaps = 23/233 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+NNLN+K+ ++L++SL+ +F QFG IL+++A KT K +GQA++ FKD+ AT
Sbjct: 5 PNQTLYVNNLNDKIHKEELRRSLYFLFSQFGPILDVVALKTPKMRGQAFIAFKDITCATN 64
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ +Q F + KPM+I YAK+KS K DGT+ +R+ K +K+ D +
Sbjct: 65 AMRALQSFNLFGKPMKIAYAKSKSIASMKEDGTY------QRYLAKQRKKTSGRDEEE-- 116
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
PA A T G +++ A N IL+V ++P T + F+
Sbjct: 117 ----PATKAARTET----------GRRAMDESGDAGTNKILYVSHLPPTATKSDVHNLFA 162
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+F G EVRMV+ +P + FVEY + VAMQ+L +G+ L +TYAKK
Sbjct: 163 KFEGLVEVRMVDGRPDMCFVEYETARASAVAMQNLDGFSMGEDNTLSVTYAKK 215
>gi|378726702|gb|EHY53161.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 256
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 14/244 (5%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P++T+Y+ NL E++KIDQLK++L +F ++G I++++A K LK KGQA++VF SA
Sbjct: 13 PSSTVYVKNLEERIKIDQLKEALTEIFSEYGNIIDLVAKKNLKAKGQAFVVFDSAESAAK 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E++ GF +DKPM++ +A+T+SD + E+ KR K+RK +A Q
Sbjct: 73 AIEEVNGFELFDKPMQLDFARTRSDATVLKEEGEQGLEKWKRSRLAEKERKQAQEATQQK 132
Query: 134 MGLNPAYAGAYGATPPLSQIPY---------PGG--AKSVIPEAPAPPNNILFVQNVPHD 182
+ PA A L+ P P G A ++IP+ PPN ILF++++P
Sbjct: 133 LK-RPAQAAGAQEGAGLAGRPAKTAKGAGLKPSGTNAAAIIPDEYLPPNKILFIRDLPDS 191
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLI 240
L FS+F GFKEVRMV + GIAFVEY E A A ++ +++G + + +
Sbjct: 192 YDADGLSRIFSRFEGFKEVRMVPGRKGIAFVEYESEAGAISAKEATAGMQLGDEGKGIRV 251
Query: 241 TYAK 244
TY +
Sbjct: 252 TYQR 255
>gi|392597982|gb|EIW87304.1| RNA binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 263
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 146/252 (57%), Gaps = 19/252 (7%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
+EP A++ E + + T+YI NLNEK+K+D +KQSL ++FK +G +L+++A L+ +GQ
Sbjct: 24 VEPPTASEEPE-NVSETLYIQNLNEKIKVDVIKQSLRSLFKTYGEVLDVVAHSNLRMRGQ 82
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEK 119
A++ F+ A A+E+++GFP Y+KPM+I +A+++SD ++ K D + +R E K
Sbjct: 83 AFVSFESPEVAKKAMEEVRGFPLYNKPMQISFARSRSDAVVKKLDAEHFDAHKAQRDEHK 142
Query: 120 GKKR-----KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNIL 174
R K + A + ++ A A P + +P+ PPN IL
Sbjct: 143 KNTRYTNPLKQKLRAKRMATDIDGAAAAPAVKRPNVQ-----------MPDEYLPPNKIL 191
Query: 175 FVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI- 233
F+QN+P + L F+Q+P EVR++ K IAFVE+ DE A VA +L + K+
Sbjct: 192 FLQNLPENVDKEQLTTLFTQYPNLHEVRLIPTKKDIAFVEFVDEASAGVAKDALHNYKLD 251
Query: 234 GQQQLLITYAKK 245
G+ ++ IT+A+K
Sbjct: 252 GENKIKITFARK 263
>gi|242023616|ref|XP_002432228.1| U2 small nuclear ribonucleoprotein B'', putative [Pediculus humanus
corporis]
gi|212517625|gb|EEB19490.1| U2 small nuclear ribonucleoprotein B'', putative [Pediculus humanus
corporis]
Length = 190
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 124/195 (63%), Gaps = 17/195 (8%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+I+A KTL+ KGQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNLNEKLKKDELKKSLYAIFSQFGQILDIVALKTLRMKGQAFVIFKEINS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA- 129
AT A+ MQGFPFYDKPMRIQY KT SDIIAK GT+ R ++ + + +D
Sbjct: 62 ATKALMSMQGFPFYDKPMRIQYCKTDSDIIAKMKGTYSERPKKPKKPAPVAREEDPEKKK 121
Query: 130 ---------NQAGMGLNPAYAGA-YGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV 179
+ GMG + + A Y A LS + + V P PPN ILF+ N+
Sbjct: 122 AKKNANKIDGRLGMGFDGLHGMAQYNAAAMLSNL------QGVGPVPEQPPNQILFLTNL 175
Query: 180 PHDTTPMALQMFFSQ 194
P +T+ M L M F+Q
Sbjct: 176 PDETSEMMLSMLFNQ 190
>gi|167518960|ref|XP_001743820.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777782|gb|EDQ91398.1| predicted protein [Monosiga brevicollis MX1]
Length = 213
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 132/236 (55%), Gaps = 25/236 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ P+ TIYI NLN++++ ++L+++L+ +F QFG IL+++A KT K +GQA++VFKDV
Sbjct: 2 DVPPSPTIYIKNLNDRIQKEELRRTLYGLFSQFGGILDVVALKTNKMRGQAFIVFKDVGC 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQ FP +DKPM IQYAK KS K DGT +K ++ K ++ D N
Sbjct: 62 ASNALRSMQKFPLFDKPMSIQYAKAKSYATMKEDGTL-----QKHLAQQRKAKQSSADTN 116
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
PP I V + N I++ N+P +TT L
Sbjct: 117 ---------------GEPPAKMIKMT----PVATASEGTNNTIVYCSNLPQETTKEMLLA 157
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
F + G EVR+VE +P IAFVE+ E +A +A+ +L ++ + ++ + +AKK
Sbjct: 158 LFGELKGLVEVRLVEGRPDIAFVEFSTEQEAGIAISALDGFQVDAEHKMSVAFAKK 213
>gi|307190556|gb|EFN74543.1| U1 small nuclear ribonucleoprotein A [Camponotus floridanus]
Length = 184
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 122/198 (61%), Gaps = 25/198 (12%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH- 116
+GQA+++FK++ASA+ A+ MQGFPFYDKPMRIQYAKT SD+IAK GTF R ++ +
Sbjct: 2 RGQAFVIFKEIASASNALRSMQGFPFYDKPMRIQYAKTDSDVIAKMKGTFAERPKKPKRI 61
Query: 117 -------EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIP-YPGGAKSVIPEAPA 168
++ KKR + + +G +P +P +PG + +PE
Sbjct: 62 IPAADEEAKRAKKRAKEQAKHSQQVGYHP-------------NVPQHPGLVNTAVPE--Q 106
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN ILF+ N+P +T+ M L M F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +L
Sbjct: 107 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDAL 166
Query: 229 QSLKIGQQQLL-ITYAKK 245
Q KI + I++AKK
Sbjct: 167 QGFKITPSHAMKISFAKK 184
>gi|83772778|dbj|BAE62906.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 248
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 136/234 (58%), Gaps = 9/234 (3%)
Query: 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79
+ NL E+VK+DQLK++L +F ++G +++I+A LK KGQA++VF V SA+ A++++
Sbjct: 16 VRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVESASNAIDEIN 75
Query: 80 GFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA 139
GF +DKPM + +AKT+SD +G E KR K+RK H+A +A L
Sbjct: 76 GFELFDKPMVLDFAKTRSDATVLREGGEDELEAHKRRRLAEKERKQAHEALEAQKKLKRP 135
Query: 140 YAGAYGATPPLSQI------PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
GA +T P P G +VIP+ PPN ILF++++P +L F
Sbjct: 136 -PGAPDSTRPAKTAKGAGLKPTSGATAAVIPDEYLPPNKILFLRDLPDTADQESLTAVFG 194
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAKK 245
+F GF+EVR+V + GIAFVEY +E A A ++ + +G+ + + +TY ++
Sbjct: 195 RFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGESGKPIRVTYQRQ 248
>gi|346326132|gb|EGX95728.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 267
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 137/249 (55%), Gaps = 22/249 (8%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+Y+ NL E+VK + L +L +F +FG +++I+A LK KGQA++VF ASA AV++
Sbjct: 20 VYVQNLEERVKPEPLTSALRTIFSEFGQVVDIVAKTNLKAKGQAFVVFDTPASAQEAVDE 79
Query: 78 MQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE--EKG------------KKR 123
+ GFP +DKPMR+ A++ SD + G+ E K+H EKG +K+
Sbjct: 80 INGFPLFDKPMRLAMARSYSDKTVEMSGSPAQLEAHKQHRLAEKGCEEEMLTAILVTEKK 139
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS-------VIPEAPAPPNNILFV 176
K A G A AG GA S+I P G KS VIP+ PPN ILF+
Sbjct: 140 KAIEAAEGPRQGKRGA-AGVVGADGRPSKIGKPSGLKSTSVAQAAVIPDEYLPPNKILFL 198
Query: 177 QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236
QNVP + L F +F GF+EVR+V + GIAFVEY E AT A ++ + +G +
Sbjct: 199 QNVPDEYDVEGLTALFGRFEGFREVRVVPGRRGIAFVEYDAEQGATEAKENTAGMTLGDR 258
Query: 237 QLLITYAKK 245
+ +TY ++
Sbjct: 259 NIKVTYQRQ 267
>gi|116195978|ref|XP_001223801.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88180500|gb|EAQ87968.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 247
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 137/242 (56%), Gaps = 10/242 (4%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NL E+VK + LK++L A+F ++G +++I+A LK KGQA++VF SA A
Sbjct: 6 PIATVYVRNLEERVKPEPLKEALRALFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGT---FVPRERRKRHEEKGKKRKDQHDAN 130
A+E + GF +DKPM++ A+T+SD G F +RR+ E+ KK + +
Sbjct: 66 AIEDIHGFELFDKPMQLALARTRSDATVMQTGNEEEFDAHKRRRMAEKDKKKALETAEEQ 125
Query: 131 QAGMGLNPAYAGAYGATPPLSQ----IPYPG-GAKSVIPEAPAPPNNILFVQNVPHDTTP 185
+ P A GA P + + G GA +V+P+ PPN ILFVQN+P D
Sbjct: 126 KRLKRPMPGAAAEVGARPAKNARGAGLKSTGAGATAVVPDEYLPPNRILFVQNLPDDFDK 185
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLITYA 243
AL F +F GF+EVR V + GIAFVEY E A A ++ LK G++ + +TY
Sbjct: 186 DALNAIFGRFEGFREVRTVPGRSGIAFVEYEAEAGAITAKENTAGMPLKNGEKMMKVTYQ 245
Query: 244 KK 245
++
Sbjct: 246 RQ 247
>gi|85109011|ref|XP_962704.1| hypothetical protein NCU08034 [Neurospora crassa OR74A]
gi|28924315|gb|EAA33468.1| hypothetical protein NCU08034 [Neurospora crassa OR74A]
gi|39979161|emb|CAE85534.1| related to small nuclear ribonucleoprotein snRNP U1A [Neurospora
crassa]
Length = 247
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 142/242 (58%), Gaps = 10/242 (4%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P T+Y+ NL E+VK + LK++L +F ++G +++I+A LK KGQA++VF SA
Sbjct: 7 APIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQ 66
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSD--IIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AA++++QGF ++KPM + A+T+SD +I + + +R+R EK KKR + A
Sbjct: 67 AAIDELQGFELFEKPMVVTLARTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEV-AE 125
Query: 131 QAGMGLNPAYAGAYGATPPLSQ----IPYPG-GAKSVIPEAPAPPNNILFVQNVPHDTTP 185
Q P A A P +Q + G G +V+P+ PPN ILFVQN+P D T
Sbjct: 126 QQNRLKRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPDEYLPPNRILFVQNLPDDFTK 185
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL--QSLKIGQQQLLITYA 243
L FS+F GF+EVR V + GIAFVEY E A A ++ +LK G++ + +TY
Sbjct: 186 DDLTTIFSRFDGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMALKNGEKIMKVTYQ 245
Query: 244 KK 245
++
Sbjct: 246 RQ 247
>gi|225684437|gb|EEH22721.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides brasiliensis
Pb03]
Length = 1484
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 91/246 (36%), Positives = 139/246 (56%), Gaps = 16/246 (6%)
Query: 13 SPNNTI-YINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
SPNN++ + NL E++K++ LK++L +F ++G I++I+A LK KGQA++VF +V SA
Sbjct: 1242 SPNNSMKAVQNLEERIKVEPLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSA 1301
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSD---IIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
T A+E++ GF ++KPM + YAKT+SD + + +G +RR+ E K+RK +
Sbjct: 1302 TRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEGELEAHKRRRLAE---KERKQAQE 1358
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQI-------PYPGGAKSVIPEAPAPPNNILFVQNVPH 181
A +A L GA S+ P A VIP+ PPN ILF++ +P
Sbjct: 1359 ALEAQKKLKRGVVAPGGAEARPSKAVKGAGLKPSNAAAAPVIPDEYLPPNKILFLREIPD 1418
Query: 182 DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI- 240
L F +F GFKEVRMV + GIAFVEY E A A ++ + +G+ + I
Sbjct: 1419 SLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGMPIR 1478
Query: 241 -TYAKK 245
TY ++
Sbjct: 1479 VTYQRQ 1484
>gi|422294869|gb|EKU22169.1| U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis
gaditana CCMP526]
Length = 289
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 134/241 (55%), Gaps = 21/241 (8%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+I PN T+Y+ NLNEK+ LK+ L+ F +G +++I+A + +GQAW+VF V
Sbjct: 65 GDIPPNQTLYVQNLNEKLNKVSLKKLLYLAFSAYGRVIDIVACRGESLRGQAWVVFDSVG 124
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP-RERRKRHEEKGKKRKDQHD 128
SAT A+ +QGFPF KPMRIQ+AK KS+ +A +GT+ P +RRKR E+ GKK+++
Sbjct: 125 SATTALRSLQGFPFLGKPMRIQFAKGKSNAVALREGTYEPGSKRRKRGEKDGKKKEESQK 184
Query: 129 ---ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
+ G A A + A L A +++L Q +P + T
Sbjct: 185 LSGSRDEGKRGKEAEAEEHVAGMAL---------------AAGEVSSMLMAQELPTECTE 229
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
L + F +F GF E+R+ + GIAF+E+ DE+ A A Q+ K+ Q L +TYAK
Sbjct: 230 EMLAVLFRRFAGFHEIRLA-GQRGIAFIEFRDEVSARTAFQAYNGFKLSQTDALKLTYAK 288
Query: 245 K 245
+
Sbjct: 289 R 289
>gi|452838817|gb|EME40757.1| hypothetical protein DOTSEDRAFT_27368 [Dothistroma septosporum
NZE10]
Length = 234
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 135/233 (57%), Gaps = 5/233 (2%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN TIYI NL+EKVKI L+ +L F++FG I++++A K L+ +GQA++VF A
Sbjct: 6 PNATIYIKNLDEKVKIPALEAALRDTFEEFGDIIDVVAKKNLRARGQAFIVFSSPEEAEL 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+E +QGF +++PM IQYAKT+SD + + +G + +K+ + ++++ A
Sbjct: 66 ALESLQGFEIFERPMDIQYAKTRSDATVQQVEGEAGLEQHKKQRIAEKERKQALAAAEAQ 125
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
A A + P S P PG + PPN IL ++ +P D AL F
Sbjct: 126 AKPAKRAAAESLAERPAKSTKPGPGANQDEY----LPPNKILLLRELPEDYGKEALTAVF 181
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+FPGFKEVR+V + G+AF EY DE +T A +++ + +G++ + +T+ ++
Sbjct: 182 QRFPGFKEVRVVPGRKGLAFAEYEDETGSTAAREAMNGVTLGEKTIKVTFQRQ 234
>gi|157831077|pdb|1FHT|A Chain A, Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117,
Nmr, 43 Structures
Length = 116
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 89/104 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 4 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRK 114
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++
Sbjct: 64 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR 107
>gi|332022263|gb|EGI62578.1| U2 small nuclear ribonucleoprotein B'' [Acromyrmex echinatior]
Length = 184
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 23/197 (11%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH- 116
+GQA+++FK++ASAT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTF R ++ +
Sbjct: 2 RGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFAERPKKPKRV 61
Query: 117 -------EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169
++ KKR + + +G Y A+ P + G + +PE P
Sbjct: 62 IPVADEEAKRAKKRAKEQAKHSQQIG--------YHASIPQ----HSGLVNAAVPE--QP 107
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
PN ILF+ N+P +T+ M L M F+QFPGFKEVR+V + IAFVE+ +E+Q+ A +LQ
Sbjct: 108 PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQ 167
Query: 230 SLKIGQQQLL-ITYAKK 245
KI + I++AKK
Sbjct: 168 GFKITPSHAMKISFAKK 184
>gi|393218308|gb|EJD03796.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 279
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 136/238 (57%), Gaps = 21/238 (8%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNE++K++ +KQ+LHA+F +G +L+++A + L+ +GQA++ F D + A A
Sbjct: 54 TLYIQNLNERIKLNVMKQTLHALFLNYGDVLDVVAHRNLRMRGQAFVSFADASIAKKAQR 113
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKA-DGTFVPRERRKRHEEKGKKR-----KDQHDAN 130
++ FP Y KPM+I +A+T+SD + K D + + R E K K R K + A
Sbjct: 114 EVNRFPLYSKPMQISFARTRSDAVVKTVDLDHFDQHKAARLEHKKKTRYNNPLKRKFRAR 173
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ ++ GA +P P +P+ PPN ILF+QN+P T Q+
Sbjct: 174 RLAEKMD-------GAA-----LPAPKRPAVQMPDEYLPPNKILFLQNLPESVTDSKDQL 221
Query: 191 --FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
FSQ+P +VR++ K IAFVEY DE AT A +L + K+ G+ ++ ITYA+K
Sbjct: 222 LALFSQYPNLHDVRLIPTKKDIAFVEYSDEASATAAKDALHNYKLDGEHKIKITYARK 279
>gi|380483560|emb|CCF40546.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 246
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 134/241 (55%), Gaps = 9/241 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NL E+VK+D LK +L +F ++G ++EI+A LK KGQA++VF D +A
Sbjct: 6 PIATVYVRNLEERVKVDLLKGALLQIFSEYGNVIEIVAKTNLKAKGQAFVVFADPEAARK 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E++QGF ++KPM++ A+T+SD K G E KR K +K ++A +
Sbjct: 66 AIEEVQGFELFEKPMQLALARTRSDATVKTAGDDEEFELHKRRRLAEKDKKKAYEAAEEQ 125
Query: 134 MGL-NPAYAGAYGATPPLSQIPYPGGAKS-------VIPEAPAPPNNILFVQNVPHDTTP 185
L P +GA + G KS VIP+ PPN ILFVQN+P D
Sbjct: 126 KRLKRPGPSGAVAQDNRPVKAARGTGLKSTNPSTTAVIPDEYLPPNKILFVQNLPEDYDV 185
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
A+ F +F GF+EVR+V + GIAFVEY E A A ++ + +G + +TY +
Sbjct: 186 DAVTSIFGRFEGFREVRLVPGRRGIAFVEYEGEQGAITAKENTAGMVLGDSHTIKVTYQR 245
Query: 245 K 245
+
Sbjct: 246 Q 246
>gi|392570636|gb|EIW63808.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 281
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 138/241 (57%), Gaps = 28/241 (11%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNEK+KI LK SL +FK +G +L+++A L+ +GQA++ F D A A++
Sbjct: 57 TLYIQNLNEKIKIPVLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFADADVAKKALK 116
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAK---ADGTFVPRERRKRHEE--------KGKKRKD 125
+++GFP Y KPM+I +A+T+SD + K D +E+R H++ K K R+
Sbjct: 117 EVRGFPLYTKPMQISFARTRSDAVVKKLDEDNFDSHKEKRLEHKKATRYTNPIKKKYRQK 176
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
+ A G GA P ++ P +P+ PPN ILF+QN+P + +
Sbjct: 177 RLAAEMDG-----------GAAAPAAKRP-----NVQMPDEYLPPNKILFLQNLPKNVSK 220
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAK 244
L F+Q+P EVR++ K IAFVE+ DE ATVA +L + K+ G+ ++ IT+A+
Sbjct: 221 DQLMALFAQYPNLHEVRLIPTKKDIAFVEFLDEASATVAKDALHNYKLDGENKIKITFAR 280
Query: 245 K 245
K
Sbjct: 281 K 281
>gi|134084288|emb|CAK43175.1| unnamed protein product [Aspergillus niger]
Length = 255
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 145/253 (57%), Gaps = 19/253 (7%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
P +Q +P + + NL E++K+DQLK++L +F ++GT+LEI+A LK KGQA+
Sbjct: 12 PNCTSQSLRTTPPS---VRNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAF 68
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE--RRKRHEEKG 120
+VF V +AT A++++ GF +DKPM + YAKT+SD+ +G E +R+R EK
Sbjct: 69 VVFDTVEAATRAIDEINGFELFDKPMVLDYAKTRSDMTVLREGGEDELEAHKRRRLAEKA 128
Query: 121 KKRKDQHDANQAGMGLN-----PAYAGAYGATPPLSQI-PYPGGAKSVIPEAPAPPNNIL 174
H+A +A L P G T + + P G A +VIP+ PPN IL
Sbjct: 129 ------HEALEAQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAVIPDEYLPPNKIL 182
Query: 175 FVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
F++++P +L F +F GF+EVR+V + GIAFVEY +E A A ++ + +G
Sbjct: 183 FLRDLPDTADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMG 242
Query: 235 Q--QQLLITYAKK 245
+ + + +TY ++
Sbjct: 243 EAGKPIRVTYQRQ 255
>gi|426200920|gb|EKV50843.1| hypothetical protein AGABI2DRAFT_189187 [Agaricus bisporus var.
bisporus H97]
Length = 292
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 136/237 (57%), Gaps = 8/237 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E +P T+YI NLNEKVK L+ +L +FK +G +L+++A ++ +GQA++ F V S
Sbjct: 62 EENPCETLYIQNLNEKVKPQVLQATLRGLFKSYGDVLDVVAHGNMRMRGQAFVSFDSVDS 121
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A A++ +Q FP Y KPM+I +AKT+SD ++ K D + +++R E K R
Sbjct: 122 ARKAMKDVQRFPLYSKPMQITFAKTRSDAVVKKLDAESYDQHKQRRDEHKKATRYTNPIK 181
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
++ + A GA P S+ P +P+ PPN ILF+QN+P T L
Sbjct: 182 SKFRLKRMAAEMDG-GAALPQSKRP-----AVQMPDEYLPPNKILFLQNLPESVTKDQLM 235
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
FSQ+P EVRM+ K IAFVEY DE A VA +L + K+ G+ ++ IT+A+K
Sbjct: 236 SLFSQYPNLYEVRMIPTKKDIAFVEYVDEGSAGVAKDALHNYKLDGENKIKITFARK 292
>gi|409084026|gb|EKM84383.1| hypothetical protein AGABI1DRAFT_110905 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 292
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 135/237 (56%), Gaps = 8/237 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E P T+YI NLNEKVK L+ +L +FK +G +L+++A ++ +GQA++ F V S
Sbjct: 62 EEKPCETLYIQNLNEKVKPQVLQATLRGLFKSYGDVLDVVAHGNMRMRGQAFVSFDSVDS 121
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A A++ +Q FP Y KPM+I +AKT+SD ++ K D + +++R E K R
Sbjct: 122 ARKAMKDVQRFPLYSKPMQITFAKTRSDAVVKKLDAESYDQHKQRRDEHKKATRYTNPIK 181
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
++ + A GA P S+ P +P+ PPN ILF+QN+P T L
Sbjct: 182 SKFRLKRMAAEMDG-GAALPQSKRP-----AVQMPDEYLPPNKILFLQNLPESVTKDQLM 235
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
FSQ+P EVRM+ K IAFVEY DE A VA +L + K+ G+ ++ IT+A+K
Sbjct: 236 SLFSQYPNLYEVRMIPTKKDIAFVEYVDEGSAGVAKDALHNYKLDGENKIKITFARK 292
>gi|389635243|ref|XP_003715274.1| small nuclear ribonucleoprotein U1a [Magnaporthe oryzae 70-15]
gi|351647607|gb|EHA55467.1| small nuclear ribonucleoprotein U1a [Magnaporthe oryzae 70-15]
gi|440466162|gb|ELQ35444.1| small nuclear ribonucleoprotein U1a,U2b [Magnaporthe oryzae Y34]
gi|440480667|gb|ELQ61320.1| small nuclear ribonucleoprotein U1a,U2b [Magnaporthe oryzae P131]
Length = 234
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 28/246 (11%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P T+Y+ NL E+VK D LK++L +F ++G I++I+A LK KGQA++VF D ASA
Sbjct: 4 APIATVYVRNLEERVKPDVLKETLTTIFSEYGNIIDIVAKTNLKAKGQAFVVFDDPASAQ 63
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE-----------EKGK 121
A+E++QGF +DKP+ + A+T+SD KA+G+ E KR
Sbjct: 64 RAIEEVQGFEIFDKPIHLALARTRSDATVKANGSEEDLEAHKRRRVAEMDKKKAAEAAAA 123
Query: 122 KRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPH 181
+ + + AN+ G GL A G P GA +P+ PPN ILFVQ++P
Sbjct: 124 QTQLKDRANKPGRGLK-----ATG----------PAGAAPTVPDEYLPPNKILFVQHLPE 168
Query: 182 DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LL 239
D L F +F GF+EVR+V + GIAFVEY E A A ++ + +G + +
Sbjct: 169 DFDVEKLTTVFGRFDGFREVRLVPGRRGIAFVEYDGEAGAIAAKENTAGMPLGAEGKPVK 228
Query: 240 ITYAKK 245
+TY ++
Sbjct: 229 VTYQRQ 234
>gi|154283345|ref|XP_001542468.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410648|gb|EDN06036.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 245
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 131/235 (55%), Gaps = 9/235 (3%)
Query: 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79
+ NL E++KI+ LK++L +F ++G I++I+A LK KGQA++VF +V SAT A+E++
Sbjct: 11 VRNLEERIKIESLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVVFDNVDSATRAIEEIN 70
Query: 80 GFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA 139
GF ++KPM + YAKT+SD + E KR K+RK +A +A L
Sbjct: 71 GFELFEKPMVLDYAKTRSDATVLKEQGEAELEAHKRKRLAEKERKQAQEALEAQKKLKRG 130
Query: 140 YAGAYGATPPLSQI-------PYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
A GA S++ P A VIP+ PPN ILF++ +P L F
Sbjct: 131 AAAPGGAETRPSKVTRGTGLKPSNAAAAPVIPDEYLPPNKILFLREIPDSLDQEGLTAVF 190
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAKK 245
+F GFKEVRMV + GIAFVEY E A A ++ + +G+ + + +TY ++
Sbjct: 191 GRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGKPIRVTYQRQ 245
>gi|171690714|ref|XP_001910282.1| hypothetical protein [Podospora anserina S mat+]
gi|170945305|emb|CAP71417.1| unnamed protein product [Podospora anserina S mat+]
Length = 248
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 137/242 (56%), Gaps = 10/242 (4%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NL E+VK + LK++L +F ++G +++I+ LK KGQA++VF SA
Sbjct: 7 PIATVYVRNLEERVKPEPLKEALMVIFSEYGNVIDIVVKTNLKAKGQAFVVFDKPESALT 66
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGT--FVPRERRKRHEEKGKKRKDQHDANQ 131
A+E++QGF ++KPM++ A+T+SD K G +R+R EK KK+ + Q
Sbjct: 67 AIEEVQGFELFEKPMQVALARTRSDATVKQTGNEEEFDAHKRRRMAEKDKKKALETAEEQ 126
Query: 132 AGM-----GLNPAYAGAYGATPPLSQIPYPG-GAKSVIPEAPAPPNNILFVQNVPHDTTP 185
+ G A +G + + G GA +V+P+ PPN ILFVQN+P D
Sbjct: 127 KRLKRPLPGAETAVSGRPTKNARGAGLKSTGAGAAAVVPDEYLPPNRILFVQNLPDDFGK 186
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL--QSLKIGQQQLLITYA 243
L FS+F GF+EVR V + GIAFVEY E A A ++ +LK G++ + +TY
Sbjct: 187 DELTGIFSRFEGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMALKNGEKTMKVTYQ 246
Query: 244 KK 245
++
Sbjct: 247 RQ 248
>gi|358366650|dbj|GAA83270.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus kawachii IFO
4308]
Length = 1418
Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats.
Identities = 90/262 (34%), Positives = 143/262 (54%), Gaps = 36/262 (13%)
Query: 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79
+ NL E++K+DQLK++L +F ++GT+LEI+A LK KGQA++VF V +AT A++++
Sbjct: 1157 VRNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAATRAIDEIN 1216
Query: 80 GFPFYDKPMRIQYAKTKSDIIAKADG--TFVPRERRKRHEEKGK---------------- 121
GF +DKPM + YAKT+SD+ +G + +R+R EKG
Sbjct: 1217 GFELFDKPMVLDYAKTRSDMTVLREGGEDELEAHKRRRLAEKGMLGFPLLLAFLIVSFCW 1276
Query: 122 ----------KRKDQHDANQAGMGLN-----PAYAGAYGATPPLSQI-PYPGGAKSVIPE 165
+RK H+A +A L P G T + + P G A +VIP+
Sbjct: 1277 KWLMMVVSGVERKQAHEALEAQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAVIPD 1336
Query: 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM 225
PPN ILF++++P +L F +F GF+EVR+V + GIAFVEY +E A A
Sbjct: 1337 EYLPPNKILFLRDLPDTADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAK 1396
Query: 226 QSLQSLKIGQ--QQLLITYAKK 245
++ + +G+ + + +TY ++
Sbjct: 1397 EATSGMAMGEAGKPIRVTYQRQ 1418
>gi|170103054|ref|XP_001882742.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642113|gb|EDR06370.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 243
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 18/236 (7%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNEK+K + LK SL +FK +G +L+++A L+ +GQA++ F A A++
Sbjct: 19 TLYIQNLNEKIKPEVLKASLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFASPEVAKKAMK 78
Query: 77 KMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKR-----KDQHDAN 130
++Q FP Y KPM+I +AKT+SD ++ + DG + R E K K R K + A
Sbjct: 79 EVQRFPLYSKPMQISFAKTRSDAVVKRIDGANFDGHKATRDENKKKTRYTNPVKSKFRAK 138
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ ++ A A +P +P+ PPN ILF+QN+P T L
Sbjct: 139 RLAAEIDGAAA-----------LPAVKRPNVQMPDEYLPPNKILFLQNLPESVTKEQLLG 187
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
FSQ+P EVR++ K IAFVEY DE A VA +L + K+ G+ ++ ITYA+K
Sbjct: 188 LFSQYPNLYEVRLIPTKRDIAFVEYMDEGSAGVAKDALHNFKLDGENKIKITYARK 243
>gi|342885057|gb|EGU85166.1| hypothetical protein FOXB_04281 [Fusarium oxysporum Fo5176]
Length = 243
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 132/239 (55%), Gaps = 8/239 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+Y+ NL E+VK+D L +L VF +FG +++I+A K L+ KGQA++V+ + SA
Sbjct: 6 PISTVYVQNLEERVKLDALVDTLRTVFAEFGNVVDIVAKKNLRAKGQAFVVYDNPESAQD 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ ++ GF + KPM++ +A+T+SD + G E+ KRH + K ++ ++ +
Sbjct: 66 AINEIDGFELFGKPMKLAFARTQSDKTIELKGNQEELEQHKRHRQAEKDKRKALESAEEQ 125
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-------PPNNILFVQNVPHDTTPM 186
+N +G+ P ++ G KS A PPN ILFVQN P
Sbjct: 126 RQINKRGSGSVNDNRP-AKAAKSSGLKSTSAAASGSVLDEFLPPNKILFVQNFPEGYDIE 184
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
L F +F GF+EVR+V + GIAFVEY E A A ++ L +G + + +TY ++
Sbjct: 185 TLTSVFGRFDGFREVRLVPGRRGIAFVEYEAEQGAITAKENTAGLHLGDKPIKVTYQRQ 243
>gi|2982060|pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
gi|157874113|pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
gi|157874114|pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 84/98 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV
Sbjct: 64 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 101
>gi|358054072|dbj|GAA99871.1| hypothetical protein E5Q_06574 [Mixia osmundae IAM 14324]
Length = 302
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 138/238 (57%), Gaps = 11/238 (4%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
+ TIYINNLNE V I +KQ+L +F+ FGT+L+++ + L+ +GQA++ F+ SA A
Sbjct: 69 SETIYINNLNETVTIKNMKQTLRNLFRNFGTVLDVVVHRNLRMRGQAFVAFEHKKSAWRA 128
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH--EEKGKKRKDQHD--AN 130
V +++ FP Y KPM++ YAKT++D + K +P E+ H E K +K+ + D
Sbjct: 129 VNEVKDFPLYGKPMQLAYAKTQADALVKRK---LP-EKLDEHLAERKVRKKVSRRDNPIR 184
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP---APPNNILFVQNVPHDTTPMA 187
Q + A A P + P A+ I + P PPN ILFVQN+P A
Sbjct: 185 QKALEARRAARTAAENAPVDGKAAAPAAAQRRIVQMPDEYLPPNKILFVQNLPDSVNKDA 244
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
L+ F+QFP EVRM+ + GIAFVE+ DE + VA ++L + K + ++ +T+A++
Sbjct: 245 LETLFTQFPNLSEVRMIPGRKGIAFVEFTDETSSGVAREALHNQKYEESKIKVTFARQ 302
>gi|328767502|gb|EGF77551.1| hypothetical protein BATDEDRAFT_13807 [Batrachochytrium
dendrobatidis JAM81]
gi|328767632|gb|EGF77681.1| hypothetical protein BATDEDRAFT_91336 [Batrachochytrium
dendrobatidis JAM81]
gi|328771962|gb|EGF82001.1| hypothetical protein BATDEDRAFT_9954 [Batrachochytrium
dendrobatidis JAM81]
Length = 235
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 129/248 (52%), Gaps = 36/248 (14%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I+ T+YINN+N++++ +L++SL+ +F Q G +L+I+A KT+K +GQA++VF +A
Sbjct: 10 ITVGQTLYINNINDRIRKKELRESLYYLFSQHGRVLDIVALKTMKMRGQAFVVFDTAPAA 69
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG----------- 120
T A+ ++QGFP YDK M+I YAKTKS+ + DG++ R R E G
Sbjct: 70 TVAMRELQGFPLYDKNMQIAYAKTKSNAVKNRDGSYSKRSRAAAIEMNGNESDASDDDTL 129
Query: 121 --KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQN 178
++R D++D+ G L + N ILFV
Sbjct: 130 HKRQRGDEYDSVTTGRHLK----------------------DNEEEMEEDDTNAILFVSQ 167
Query: 179 VPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQ 237
+P T +L F+Q GFKEVR+V +P IAFVEY QA A L +I Q
Sbjct: 168 LPSSVTEESLSTLFAQNEGFKEVRIVPGRPDIAFVEYASSAQADQARMVLNGCQITPDQA 227
Query: 238 LLITYAKK 245
+ + +A++
Sbjct: 228 MRVEFARR 235
>gi|148687025|gb|EDL18972.1| mCG119436 [Mus musculus]
Length = 170
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 102/144 (70%), Gaps = 4/144 (2%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E N+TIYINNLNEK+K D+LK+SL+A F QFG IL+IL ++LK + QA+++FK+V S
Sbjct: 8 ETRSNHTIYINNLNEKIKKDELKKSLYAFFSQFGQILDILVSRSLKMRSQAFVIFKEVTS 67
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV ER ++ E++ K ++ A
Sbjct: 68 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMTGTFV--ERDRKGEKRKPKSQETPAAK 125
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP 154
+A G A A GA P+ +P
Sbjct: 126 KAVQGG--AAAPVVGAVQPVPGMP 147
>gi|328774045|gb|EGF84082.1| hypothetical protein BATDEDRAFT_84797 [Batrachochytrium
dendrobatidis JAM81]
Length = 262
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 28/230 (12%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+Y+ NL E + LK +L VF ++G IL+I + + H+GQA++ F+ V SA A E+
Sbjct: 59 LYVRNLRETRNLTALKTALSTVFSKYGDILDIKVKRNVGHRGQAFVSFQTVESAVKAKEE 118
Query: 78 MQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLN 137
+ GFP +++PM IQ+A+ +S ++ GT V +RKR E K + DA++A
Sbjct: 119 VNGFPLFNRPMDIQFAREQSFAVSVLAGT-VEEHKRKRKEM--LKERSAFDASEASRKKQ 175
Query: 138 PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPG 197
+ + E PPN+ILF+QN+P D T +L F+QFPG
Sbjct: 176 KSNS-----------------------EESLPPNSILFIQNLPTDITNASLSALFNQFPG 212
Query: 198 FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI--GQQQLLITYAKK 245
FKEVR+V + IAFVEY +EM + +A Q+L ++ Q+++ +T+AKK
Sbjct: 213 FKEVRLVPGRSDIAFVEYHNEMHSAIAKQALHGYRLLPEQEEIKVTFAKK 262
>gi|358396862|gb|EHK46237.1| hypothetical protein TRIATDRAFT_307061 [Trichoderma atroviride IMI
206040]
Length = 242
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 135/239 (56%), Gaps = 9/239 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NL E+VK + L ++L +F +FG +++I+A + LK KGQA++VF ++A
Sbjct: 6 PITTVYVQNLEERVKPEVLSEALKTIFSEFGNVIDIVAKRNLKAKGQAFIVFDQPSAAQN 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E+++GF + KP+R+ A+ +SD + + + E KRH + K ++ +A
Sbjct: 66 AIEEVEGFELFGKPLRVAMARMQSDRTVEINCSKDELETHKRHRQAEKDKRKALEAADEQ 125
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKS-------VIPEAPAPPNNILFVQNVPHDTTPM 186
L A A A P S+ P G KS V+P+ PPN ILF+QNVP +
Sbjct: 126 RQLKRGAAAAAEARP--SKSAKPSGLKSTSAPASAVVPDEYLPPNKILFIQNVPDEYDID 183
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
L F +F GF+E+R+V + GIAFVEY +E A A ++ + + + + +TY ++
Sbjct: 184 GLNAIFGRFDGFREIRLVPGRRGIAFVEYQNEQGAITAKENTAGMLLADKPIKVTYQRQ 242
>gi|401887165|gb|EJT51169.1| RNA binding protein [Trichosporon asahii var. asahii CBS 2479]
Length = 269
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 143/247 (57%), Gaps = 18/247 (7%)
Query: 9 GNE--ISPN--NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
GN+ + PN T+Y++NLNEKV+I +K++L ++FK + + I+A + ++ +GQA++
Sbjct: 31 GNDDGLPPNASETLYLHNLNEKVRIPIMKETLASLFKPYHPLGPIVAHRNVRMRGQAFVS 90
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADG-TFVPRERRKRHEEKGKK 122
F+D A+A A + FP Y KP+ I +AKT+SD +I K DG + +++R +K K
Sbjct: 91 FRDKATAALAQRDVNEFPLYGKPIIIDFAKTRSDAVIEKQDGEEALEAWKKERLADKKTK 150
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS---VIPEAPAPPNNILFVQNV 179
RK + + A S PG AK +P+ PPNN+LFVQN+
Sbjct: 151 RKTN--------VIRARNIAKHKAGDDTSAPSGPGAAKKPKLQMPDEYLPPNNVLFVQNL 202
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQL 238
P TT L+ F Q+PG E+R + AK IAFVEY DE + VA +L + KI G+ ++
Sbjct: 203 PEGTTQDDLREVFEQYPGLVEIRTIAAKKDIAFVEYADETASAVAKDALHNFKIDGETKM 262
Query: 239 LITYAKK 245
+T+A+K
Sbjct: 263 KVTFARK 269
>gi|242207485|ref|XP_002469596.1| predicted protein [Postia placenta Mad-698-R]
gi|220731400|gb|EED85245.1| predicted protein [Postia placenta Mad-698-R]
Length = 231
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 17/225 (7%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
+ T+YI NLNEK+KI LK SL +FK +G +L+++A L+ +GQA++ F+ A A
Sbjct: 5 SETLYIQNLNEKIKIPVLKASLRGLFKAYGEVLDVVAHSNLRMRGQAFVSFESADVAKKA 64
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKR-----KDQHD 128
+++++GFP Y KPM+I +A+T+SD ++ K D + R E+K R K ++
Sbjct: 65 LKEVKGFPLYSKPMQISFARTRSDAVVKKLDAARFEEHKAHRIEQKKSTRYTNPIKRKYR 124
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
A + L+ GA P+S+ P +P+ PPN ILF+QN+P + L
Sbjct: 125 ARKMAAELD-----GPGAV-PVSKRP-----NVQMPDEYLPPNKILFLQNLPDSVSKDQL 173
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
FSQ+P EVR++ K IAFVEY DE ATVA +L + K+
Sbjct: 174 MALFSQYPNLYEVRLIPTKKDIAFVEYMDEGSATVAKDALHNYKL 218
>gi|90103266|gb|ABD85478.1| small nuclear ribonucleoprotein polypeptide A [Ictalurus punctatus]
Length = 156
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 101/145 (69%), Gaps = 4/145 (2%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL +T+K +GQA+++FK+V S
Sbjct: 5 DLRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTVKMRGQAFVIFKEVNS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRK-DQHDA 129
A+ A+ MQGFPFYDKPMRIQYAK SDIIAK GT+V R+R+K ++
Sbjct: 65 ASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKPKTTESGGSKKG 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIP 154
AGM PA A PP+SQ P
Sbjct: 125 AAAGMAGVPA---AMPGMPPMSQAP 146
>gi|361128202|gb|EHL00148.1| putative U1 small nuclear ribonucleoprotein [Glarea lozoyensis
74030]
Length = 273
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 134/233 (57%), Gaps = 14/233 (6%)
Query: 24 NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83
++++K++QLK+SL +F ++GTI++I+A LK KGQA++VF V SA A++++QGF
Sbjct: 44 HQRIKVEQLKESLRELFAEYGTIIDIVAKTNLKAKGQAFIVFDSVDSAQKAIDEVQGFEL 103
Query: 84 YDKPMRIQYAKTKSDIIAKADG--TFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYA 141
+ K M + +AKT+SD K G + +R+R EK KK+ + +Q + P A
Sbjct: 104 FGKEMELAFAKTRSDATVKRQGGEEELESHKRRRLAEKDKKKAAEQAESQKLLK-RPGAA 162
Query: 142 GAYGATP-------PLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQ 194
A P L GGA VIP+ PPN ILFVQN+P + AL F +
Sbjct: 163 APEAARPIKATRGAGLKSSNPSGGA--VIPDEYLPPNKILFVQNLPDEYEVNALTSIFER 220
Query: 195 FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI--GQQQLLITYAKK 245
F GFKEVR+V + GIAFVEY E+ A A ++ + + G Q + +TY ++
Sbjct: 221 FEGFKEVRLVPGRTGIAFVEYESEVGAISAKENTAGMPLGAGSQIIKVTYQRQ 273
>gi|213510744|ref|NP_001134742.1| U1 small nuclear ribonucleoprotein A [Salmo salar]
gi|209735590|gb|ACI68664.1| U1 small nuclear ribonucleoprotein A [Salmo salar]
Length = 281
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 98/153 (64%), Gaps = 15/153 (9%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V SA+ A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARSLKMRGQAFVIFKEVNSASNA 68
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM 134
+ MQGFPFYDKPMRI YAK SDIIAK GT+V R+R+K K K
Sbjct: 69 LRSMQGFPFYDKPMRIGYAKGDSDIIAKMKGTYVERDRKKEKRAKVK------------- 115
Query: 135 GLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP 167
P AGA P +P G + +P P
Sbjct: 116 --GPEAAGAKKGVPGTPVVPMGPGVPTAMPGMP 146
>gi|346473641|gb|AEO36665.1| hypothetical protein [Amblyomma maculatum]
Length = 183
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 117/190 (61%), Gaps = 10/190 (5%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR-H 116
+GQA++ FKD+ SAT A+ MQGFPFYDKPMRIQYAK++SD +AK GT+V R++
Sbjct: 2 RGQAFVAFKDINSATNALRSMQGFPFYDKPMRIQYAKSESDAVAKLKGTYVESSRKRTPA 61
Query: 117 EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFV 176
E + +K + Q PA GA P+ A +PE PPN ILF+
Sbjct: 62 EGEAAPKKSKKKKTQPQPQPQPAMLMMGGAGIPMV------AATGALPE--QPPNQILFL 113
Query: 177 QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236
N+P +T M L M F+QFPGFKEVR+V + IAFVE+ +E+Q++ A ++LQ KI
Sbjct: 114 TNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEIQSSAAKEALQGFKITPT 173
Query: 237 QLL-ITYAKK 245
+ IT+AKK
Sbjct: 174 HAMKITFAKK 183
>gi|256083951|ref|XP_002578198.1| small nuclear ribonucleoprotein U)1aU)2b [Schistosoma mansoni]
gi|353232717|emb|CCD80072.1| putative small nuclear ribonucleoprotein U)1a,U)2b [Schistosoma
mansoni]
Length = 226
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 12/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+Y+NNLN+KVK + LK++L+ +F Q G +++I+A KT+K +GQA+++++D+A
Sbjct: 2 DIRPNHTLYVNNLNDKVKKNDLKKALYYIFGQHGRLIDIIAMKTMKMRGQAFIIYQDIAC 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A +QGF + +PMR+ YAK S I G E + ++ +++
Sbjct: 62 ATQAYRSLQGFQLFQRPMRVTYAKKDSQQIICLKGV--------SAEVQKRREEEREKRR 113
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ M A A A S + P G I PN+ILFV N+P +TT L M
Sbjct: 114 RKKMAQRAAAAAAALQAANQS-VNGPAGTGGDINALLDQPNHILFVSNLPEETTDAMLTM 172
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
FSQF GFKE R A G+ FVEY E QA A + + K+ + IT+AKK
Sbjct: 173 LFSQFSGFKEAR--RAAGGVGFVEYDTESQAAAARSAYEGFKLTPTHAMQITFAKK 226
>gi|22219383|pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|22219386|pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|24987694|pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987697|pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987701|pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987705|pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987712|pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987713|pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|49259013|pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
gi|49259015|pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
gi|49259033|pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
gi|49259520|pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
gi|49259522|pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
gi|49259524|pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
gi|49259526|pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
gi|49259528|pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
gi|49259530|pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
gi|49259532|pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
gi|145580050|pdb|2OIH|A Chain A, Hepatitis Delta Virus Gemonic Ribozyme Precursor With C75u
Mutation And Bound To Monovalent Cation Tl+
gi|145580056|pdb|2OJ3|A Chain A, Hepatitis Delta Virus Ribozyme Precursor Structure, With
C75u Mutation, Bound To Tl+ And Cobalt Hexammine
(Co(Nh3) 63+)
Length = 100
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 82/96 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGT 106
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGT 100
>gi|56756134|gb|AAW26245.1| SJCHGC05726 protein [Schistosoma japonicum]
Length = 226
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 12/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+Y+NNLN+KVK + LK++L+ +F Q G +++I+A KT+K +GQA+++++D+A
Sbjct: 2 DIRPNHTLYVNNLNDKVKKNDLKKALYYIFGQHGRLIDIIAMKTMKMRGQAFIIYQDIAC 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A +QGF + +PMR+ YAK S I G E + ++ +++
Sbjct: 62 ATQAYRSLQGFQLFQRPMRVTYAKKDSLQIISLKGV--------SAEVQKRREEEREKRK 113
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ M A A A S + P G I PN+ILFV N+P +TT L M
Sbjct: 114 RKKMAQRAAAAAAALQAANQS-VNGPAGTGGDINALLDQPNHILFVSNLPEETTDAMLTM 172
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
FSQF GFKE R A G+ FVEY E QA A + + K+ + IT+AKK
Sbjct: 173 LFSQFSGFKEAR--RAAGGVGFVEYDTESQAAAARSAYEGFKLTPTHAMQITFAKK 226
>gi|428671090|gb|EKX72009.1| U1 snRNP protein, putative [Babesia equi]
Length = 294
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 139/268 (51%), Gaps = 36/268 (13%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+YI NLN++VK+D LK L +F ++GTIL+I+A + KGQAW+++ D+ SA
Sbjct: 27 IPPNQTLYIKNLNDRVKLDVLKGDLQDLFSKYGTILDIVAMSSFWRKGQAWIIYNDIESA 86
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-----RKRHEEKGKKR--- 123
A+E++QG ++ M I +A KSD+I+KADGTF RE+ R E + K+R
Sbjct: 87 KKAMEELQGHMYHGHAMHINFALEKSDLISKADGTFKEREKGPKKPRAIKEREEKQRLLF 146
Query: 124 ----KDQHDANQAGMG-----------LNPAYAGAYGATPPLSQIPYPGGAKSVIP---- 164
+D N GM NP A A A + +++
Sbjct: 147 KEMQRDFITGNLDGMAHAIPHQDGVSQFNPETAKALAAAQARAAELALASKRAIQSAKGA 206
Query: 165 --------EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216
AP PN LFV+++P T + F + PG+ E R++ A+ +AFV++
Sbjct: 207 NAQRRGGFSAPVIPNRTLFVESLPEGVTTNDVISLFCRMPGYIEARVIPARK-VAFVDFD 265
Query: 217 DEMQATVAMQSLQSLKIGQQQLLITYAK 244
++M + AMQ+LQ I + I+YAK
Sbjct: 266 NDMNSGYAMQTLQGQTINGTMISISYAK 293
>gi|342321005|gb|EGU12943.1| RNA binding protein [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 8/232 (3%)
Query: 6 ANQGNEISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWL 63
A+QG ++ P + +Y+NNLNEK+K+D +KQSL +F+++G +L + A + ++ +GQA++
Sbjct: 44 ADQGVQLPPGASEVLYVNNLNEKIKLDIMKQSLKVLFREYGRVLGVTAHRNVRMRGQAFV 103
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKK 122
+A AV+++Q FP Y KPM++ +A+T+SD ++ K + ++ R E K +
Sbjct: 104 TLDSKEAAVKAVKEVQKFPLYGKPMQLTFARTESDALVQKRHPDDMEAHKKARLERKKQS 163
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVI--PEAPAPPNNILFVQNVP 180
R+D + A A P++ P + ++ P+ PPN ILFVQN+P
Sbjct: 164 RRDDPARRKKLAAKAAAKQAAETGAAPVAAAPT---QRRIVQMPDEYLPPNKILFVQNLP 220
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
DTT L+ F FP EVR + + IAFVE+ DE + VA +L + K
Sbjct: 221 DDTTKEGLEALFRPFPNLVEVRTIPGRKNIAFVEFADEQSSGVARDALHNTK 272
>gi|156088273|ref|XP_001611543.1| U2 small nuclear ribonucleoprotein B' [Babesia bovis T2Bo]
gi|154798797|gb|EDO07975.1| U2 small nuclear ribonucleoprotein B', putative [Babesia bovis]
Length = 285
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 138/266 (51%), Gaps = 39/266 (14%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN TIYI N+NE++K+D LK L +F +FG IL+I+A + KGQA+++F +V SA
Sbjct: 27 IPPNQTIYIKNINERIKVDVLKAELLKMFGRFGKILDIVALTSFWRKGQAFIIFDNVESA 86
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER--------RKRHEEKGKK- 122
T A+ +MQGF M+I YA+ KSDIIAK GT+ PR + R +E+ K+
Sbjct: 87 TNALHEMQGFVMDGHAMQINYAREKSDIIAKGQGTYRPRPEGPKKPRAIKDREQEQLKRF 146
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPP-------LSQIPYPGGA---------------- 159
+ QHD L A G G P +QI + A
Sbjct: 147 ERLQHDY------LTGAIEGMTGPGDPKLIQALQAAQITFQAMALTKGPGVDSHDDSSRY 200
Query: 160 KSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
S A PN LFV+ +P + + F++ GF+E R++ A+ +AF+++ +E
Sbjct: 201 ASTASMARGLPNRTLFVEGLPEGVSLADVNAVFARSVGFQEARVIAARK-VAFIDFDNEF 259
Query: 220 QATVAMQSLQSLKIGQQQLLITYAKK 245
A AMQ+LQ +G L I+YAK+
Sbjct: 260 NAGCAMQALQEHPMGDSTLRISYAKR 285
>gi|392574488|gb|EIW67624.1| hypothetical protein TREMEDRAFT_33230 [Tremella mesenterica DSM
1558]
Length = 250
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 136/233 (58%), Gaps = 13/233 (5%)
Query: 17 TIYINNLNEKVKIDQ-LKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
T+Y+ NLNEKV++ +K++L +FK + IL ++A + ++ +GQA++ F DV +A A
Sbjct: 27 TLYLQNLNEKVRLPAVMKETLGVLFKPYRPILPVVAHRNVRMRGQAFVTFHDVETANRAR 86
Query: 76 EKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRK-RHEEKGKKRKDQHDANQAG 133
++ FP Y KP++I++AK++SD + K +G E +K R E+K + R+D +A
Sbjct: 87 REVGEFPLYGKPIQIKFAKSRSDSAVVKLEGEEALEEHKKERLEQKKRSRRDNPLRRKAA 146
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
L A G P+ + K +P+ PPNN+LFVQN+P T L+ F
Sbjct: 147 AKLR---ADTEGGPAPVKR------QKIQMPDEYLPPNNVLFVQNLPEGTEADELREVFG 197
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
PG E+R + AK IAFVEY DE A +A +L + KI G+ ++ +TYA+K
Sbjct: 198 THPGLVEIRTIPAKKDIAFVEYTDEACAGLAKTALHNFKIDGETKMKVTYARK 250
>gi|344255667|gb|EGW11771.1| U2 small nuclear ribonucleoprotein B'' [Cricetulus griseus]
Length = 180
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 13/192 (6%)
Query: 55 LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRK 114
+K +GQA+++FK++ S+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K
Sbjct: 1 MKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK 60
Query: 115 RHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNIL 174
++ + AN+ P A G P Q+P PPN IL
Sbjct: 61 EKKKAKTMEQAAAAANKKPGQGTPNSANTQGNAAPNPQVP------------DYPPNYIL 108
Query: 175 FVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
F+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI
Sbjct: 109 FLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKIT 168
Query: 235 QQQLL-ITYAKK 245
+ ITYAKK
Sbjct: 169 PSHAMKITYAKK 180
>gi|399215899|emb|CCF72587.1| unnamed protein product [Babesia microti strain RI]
Length = 291
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 134/266 (50%), Gaps = 32/266 (12%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN TIYI N+N++VK+ LK L +F QFGTI +I+A + +GQAW+VF + S
Sbjct: 27 DIPPNETIYIKNINDRVKLSVLKAYLEQIFNQFGTIRQIVAMGSFWRRGQAWIVFDSIDS 86
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV-----PRERRKRHEEKGKK--- 122
AT A+ MQG + M+I +A KSDI+AK GTFV P++ R E + K+
Sbjct: 87 ATKALNAMQGHIYQGHAMQINFALAKSDIVAKEQGTFVERPPGPKKPRAVKEREAKQFEL 146
Query: 123 -------------RKDQHDANQAGM--GLNPAYAGAYGATPPLSQIPYPGGAKSVI---- 163
+ A G+ GL A A A ++ G S
Sbjct: 147 FQQMQKSFMESNLNSETSSATYQGIDNGLLMASAQARATETAINMSKLEMGDMSQYQPRT 206
Query: 164 ----PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
P P+ ILFV+N+P D P + F Q PGF E R++ ++ +AFV++ E
Sbjct: 207 IQFQQHGPGVPHRILFVENLPPDVNPAIVSTLFGQRPGFIESRVIASR-CVAFVDFDSEQ 265
Query: 220 QATVAMQSLQSLKIGQQQLLITYAKK 245
A +A+++LQ I + I+YAKK
Sbjct: 266 SAGLALKALQGHSILGNNIYISYAKK 291
>gi|388583280|gb|EIM23582.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 263
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 132/234 (56%), Gaps = 12/234 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
S N TIY+ NLNE VK+ +K+SL ++ FG +L+++A K ++ +GQA++ F + A
Sbjct: 41 SENETIYVRNLNETVKLATMKESLRNLYSNFGEVLDVVAHKNIRMRGQAFIAFNNKHVAK 100
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ Q FP Y +P+++ +AK +D + + R+KR EE K + + +A +
Sbjct: 101 RALTDTQNFPLYGQPLKVDFAKCNADAVFR---------RQKRTEELEKHLQQRKEAKRG 151
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
M N AG ++ + +P+ PPN ILF+QN+P T+ L+ F
Sbjct: 152 LMKSNRVKAGQPAERDEGTK--AAQQKQQQMPDEYLPPNVILFIQNLPSGTSKEKLEEIF 209
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-LLITYAKK 245
Q+P EVR++ A+P IAFVEY DE ++VA +L + +I + + +T+A++
Sbjct: 210 GQYPNLAEVRVIPARPDIAFVEYMDESSSSVAKDALNNYQIESDKPIKVTFARQ 263
>gi|406694958|gb|EKC98273.1| hypothetical protein A1Q2_07287 [Trichosporon asahii var. asahii
CBS 8904]
Length = 865
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 144/248 (58%), Gaps = 19/248 (7%)
Query: 9 GNE--ISPN--NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
GN+ + PN T+Y++NLNEKV+I +K++L ++FK + + I+A + ++ +GQA++
Sbjct: 626 GNDDGLPPNASETLYLHNLNEKVRIPIMKETLASLFKPYHPLGPIVAHRNVRMRGQAFVS 685
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRI-QYAKTKSD-IIAKADGT-FVPRERRKRHEEKGK 121
F+D A+A A + FP Y KP++I +AKT+SD +I K DG + +++R +K
Sbjct: 686 FRDKATAALAQRDVNEFPLYGKPIQIIDFAKTRSDAVIEKQDGEEALEAWKKERLADKKT 745
Query: 122 KRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS---VIPEAPAPPNNILFVQN 178
KRK + + A S PG AK +P+ PPNN+LFVQN
Sbjct: 746 KRKTNV--------IRARNIAKHKAGDDTSAPSGPGAAKKPKLQMPDEYLPPNNVLFVQN 797
Query: 179 VPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQ 237
+P TT L+ F Q+PG E+R + AK IAFVEY DE + VA +L + KI G+ +
Sbjct: 798 LPEGTTQDDLREVFEQYPGLVEIRTIAAKKDIAFVEYADETASAVAKDALHNFKIDGETK 857
Query: 238 LLITYAKK 245
+ +T+A+K
Sbjct: 858 MKVTFARK 865
>gi|405123760|gb|AFR98523.1| RNA binding protein [Cryptococcus neoformans var. grubii H99]
Length = 284
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 137/240 (57%), Gaps = 17/240 (7%)
Query: 14 PNN---TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
P+N T+Y+ NLNEKV+I +K++L+ +FK + + I+A ++ +GQA++ F D+ S
Sbjct: 54 PDNACETLYLQNLNEKVRIPVMKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFPDIES 113
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER--RKRHEEKGKKRKDQ-- 126
A A + + FP Y K ++IQ+AK SD I K G E ++R EEK KRK+
Sbjct: 114 ANEARKDVNEFPLYGKSIQIQFAKGLSDSIVKRKGDEREFEEHTKRRLEEKKLKRKNNPL 173
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
+QA + + AG G P + +P+ PPN++LFVQN+P TT
Sbjct: 174 RQKSQAKLRAD-TTAGTAG--------PAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTSE 224
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
L+ F PG E+R + AK IAFVE+ DE AT+A +L + KI G+ ++ +TYA+K
Sbjct: 225 DLREVFEVHPGLIEIRTIPAKKDIAFVEFADEGAATIAKDALHNFKIDGETKMKVTYARK 284
>gi|341897443|gb|EGT53378.1| CBN-RNP-3 protein [Caenorhabditis brenneri]
Length = 190
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 116/201 (57%), Gaps = 27/201 (13%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+ISPN+T+Y+NNLNEK+K D+LK+SLH +F QFG I+++++F+ K +GQA +VFK+V+S
Sbjct: 3 DISPNHTVYVNNLNEKIKKDELKRSLHMIFTQFGEIIQLMSFRKEKMRGQAHVVFKEVSS 62
Query: 71 ATAAVEKMQ-----------GFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK 119
A+ A+ +Q G P Y KP QYA+ SD+IA+A GTFV E+R++
Sbjct: 63 ASNALRALQLSPPNLKFSISGLPVYGKPDANQYAREDSDVIARAKGTFV--EKRQKSVGG 120
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV 179
K+K ++ PA + G + +K E P PNNILF N+
Sbjct: 121 ANKQKKPYE--------RPAKSSTAGEKNDQEK------SKEEDSEGPGAPNNILFCSNI 166
Query: 180 PHDTTPMALQMFFSQFPGFKE 200
P T P +Q FSQ F+E
Sbjct: 167 PDGTDPEQIQTIFSQCVIFRE 187
>gi|326433216|gb|EGD78786.1| hypothetical protein PTSG_01762 [Salpingoeca sp. ATCC 50818]
Length = 462
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 84/107 (78%)
Query: 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFK 66
N + + NNTIYINNLNEKVK D+LK++L AVFKQFG IL+I+A K+ +GQA++VF
Sbjct: 165 NDTDLLPENNTIYINNLNEKVKEDELKKALTAVFKQFGKILQIVAMKSYYRRGQAFVVFD 224
Query: 67 DVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
V SA AA+ MQGFPF KPMRI +AKTKSD+IAK DGTF PRE++
Sbjct: 225 SVDSAKAAISAMQGFPFVGKPMRINFAKTKSDVIAKRDGTFKPREKK 271
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
PN ILFVQN+P TT + F QF GFKEVR V ++P IAFVEY + MQ+ A L
Sbjct: 386 PNAILFVQNIPAGTTAERITNLFKQFAGFKEVRTVPSRPDIAFVEYDNPMQSGYAKVQLH 445
Query: 230 SLKIG-QQQLLITYAKK 245
+I ++ + +AKK
Sbjct: 446 QHEIAPGSKITVAFAKK 462
>gi|299742799|ref|XP_001832784.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298405354|gb|EAU89029.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 257
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 16/235 (6%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNEK+K + LK +L +FK +G +L+++A L+ +GQA++ F+ A A+
Sbjct: 33 TLYIQNLNEKIKPEVLKTTLRGLFKTYGPVLDVVAHSNLRMRGQAFVSFESADIAEKAMR 92
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
++Q FP Y KPM+I +AKT+SD + K ++ + + K R+++H +A
Sbjct: 93 EVQRFPLYSKPMQISFAKTRSDAVVK--------QKDAENFDSHKARREEH--KKATRYT 142
Query: 137 NPA---YAGAYGATPPLSQIPYPGGAKSVI--PEAPAPPNNILFVQNVPHDTTPMALQMF 191
NP + A P + I P+ PPN ILFVQN+P T L
Sbjct: 143 NPVKAKFKAKRLAADVDGGAAAPAAKRQAIQMPDEYLPPNKILFVQNLPESVTKDQLTTL 202
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
FSQ+P EVR++ K IAFVE+ DE + VA +L + KI G+ ++ IT+A+K
Sbjct: 203 FSQYPNLYEVRLIPTKKDIAFVEFLDEASSGVAKDALHNFKIDGENKIKITFARK 257
>gi|52696011|pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
gi|75765951|pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX THAT
Includes All Catalytic Metal Ion Ligands.
gi|262367893|pdb|3G8S|A Chain A, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367896|pdb|3G8S|B Chain B, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367899|pdb|3G8S|C Chain C, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367902|pdb|3G8S|D Chain D, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367905|pdb|3G8T|A Chain A, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367908|pdb|3G8T|B Chain B, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367911|pdb|3G8T|C Chain C, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367914|pdb|3G8T|D Chain D, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367929|pdb|3G96|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367932|pdb|3G96|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367935|pdb|3G96|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367938|pdb|3G96|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367941|pdb|3G9C|A Chain A, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367944|pdb|3G9C|B Chain B, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367947|pdb|3G9C|C Chain C, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367950|pdb|3G9C|D Chain D, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|266618687|pdb|3IRW|P Chain P, Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
gi|304445913|pdb|3MUM|P Chain P, Crystal Structure Of The G20a Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445915|pdb|3MUR|P Chain P, Crystal Structure Of The C92u Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445917|pdb|3MUT|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Gmp
gi|304445919|pdb|3MUV|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Amp
gi|304445933|pdb|3MXH|P Chain P, Native Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
gi|327533656|pdb|3P49|B Chain B, Crystal Structure Of A Glycine Riboswitch From
Fusobacterium Nucleatum
gi|345110840|pdb|3R1H|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
gi|345110843|pdb|3R1H|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
gi|345110846|pdb|3R1L|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
gi|345110849|pdb|3R1L|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
gi|367460217|pdb|3UCU|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Pgpg
gi|367460220|pdb|3UCZ|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Gpg
gi|367460223|pdb|3UD3|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Pgpa
gi|367460226|pdb|3UD4|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Gpa
Length = 98
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 80/92 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
>gi|126031306|pdb|2NZ4|A Chain A, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031309|pdb|2NZ4|B Chain B, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031312|pdb|2NZ4|C Chain C, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031315|pdb|2NZ4|D Chain D, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
Length = 94
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 80/92 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 1 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS 60
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK
Sbjct: 61 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 92
>gi|281500860|pdb|3K0J|A Chain A, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500861|pdb|3K0J|B Chain B, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500862|pdb|3K0J|C Chain C, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500863|pdb|3K0J|D Chain D, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
Length = 96
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 80/92 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK
Sbjct: 64 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 95
>gi|1431699|pdb|1URN|A Chain A, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431701|pdb|1URN|B Chain B, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431703|pdb|1URN|C Chain C, U1a MutantRNA COMPLEX + GLYCEROL
gi|28949021|pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
gi|28949022|pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
gi|269914461|pdb|3HHN|B Chain B, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
gi|269914463|pdb|3HHN|D Chain D, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
Length = 97
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 80/92 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK
Sbjct: 64 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 95
>gi|171849013|pdb|3BO2|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|171849018|pdb|3BO3|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|171849022|pdb|3BO4|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|290790099|pdb|3IIN|A Chain A, Plasticity Of The Kink Turn Structural Motif
Length = 95
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 80/92 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 2 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAK 93
>gi|331231467|ref|XP_003328397.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307387|gb|EFP83978.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 315
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 135/240 (56%), Gaps = 15/240 (6%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+NNLNE+VK+ LKQ+L + K FG +L+++A ++++ +GQA++ F D A AV+
Sbjct: 80 TVYLNNLNERVKLPALKQTLKNLLKNFGPVLDVVAHRSVRMRGQAFVAFPDREMAAKAVK 139
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKA---------DGTFVPRERRKRHEEKGKKRKDQH 127
+++GFP Y KP+ I +A++ +D + K + +++R R E +K+ +
Sbjct: 140 EVKGFPLYGKPIEIAFARSPADCVVKRKTPDDFEAHKAERLLKKKRSRRENPLRKKAVEA 199
Query: 128 DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSV-IPEAPAPPNNILFVQNVPHDTTPM 186
A AG ++ P P K V +P+ PPN ILF+QN+P +
Sbjct: 200 KEAARKAASTAASAGPMASSVP----PASSNRKIVQMPDEYQPPNKILFIQNLPENAGKD 255
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYAKK 245
AL++ F Q+P EVR + + IAFVEY D + VA +L + K G+ ++ +T+AK+
Sbjct: 256 ALEVLFKQYPNLVEVRTIPGRSNIAFVEYVDATSSGVAKDALHNYKFDGEHKIKVTFAKQ 315
>gi|74354072|gb|AAI02329.1| SNRPB2 protein [Bos taurus]
Length = 106
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 90/105 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K+
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKK 106
>gi|256083949|ref|XP_002578197.1| small nuclear ribonucleoprotein U)1aU)2b [Schistosoma mansoni]
gi|353232716|emb|CCD80071.1| putative small nuclear ribonucleoprotein U)1a,U)2b [Schistosoma
mansoni]
Length = 328
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/99 (62%), Positives = 80/99 (80%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PNNTIYINN+NEK+K D+LK+SL AVF QFG IL+I+ +TLK +GQA++VF D++SA+
Sbjct: 56 PNNTIYINNMNEKIKCDELKKSLCAVFDQFGQILDIITSRTLKMRGQAFVVFDDISSAST 115
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
A+ MQGFP Y+KPMRI +AK SD+IAK GTFV R +
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN ILF+ N+P D+ L M F QF G++EVRMV + IAFVE+G+E++A+ A L
Sbjct: 251 PPNKILFLTNLPDDSDEAMLSMLFGQFTGYREVRMVPGRHDIAFVEFGNEVEASAAKLGL 310
Query: 229 QSLKIG-QQQLLITYAKK 245
Q I Q + IT+AKK
Sbjct: 311 QGFNIRPGQAIRITFAKK 328
>gi|213410425|ref|XP_002175982.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
gi|212004029|gb|EEB09689.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
Length = 249
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 136/234 (58%), Gaps = 16/234 (6%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NL E++K++ LK+ L +F ++G IL + A KTL+ +GQA++VF+D A A++
Sbjct: 25 TLYIRNLEERIKLEMLKRILEHLFGKYGKILHVYARKTLRMRGQAFVVFEDGRCAAQALQ 84
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKAD-GTFVPRE-RRKRHEEKGKKRKDQHDANQAGM 134
+QGFP Y KPM IQ++ +KSDI+ + D G V +E ++KRH E+ + R+ Q +
Sbjct: 85 DLQGFPLYGKPMLIQFSNSKSDIVVQRDEGELVLQENKKKRHAERERMRQ------QGEL 138
Query: 135 GLNPAYAGAYGATPP---LSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMF 191
P +G AT + P P + + PPN +L +QN+P + L
Sbjct: 139 RPMPQRSGHRKATNKKVNAGEKPMPH-----VVDDLLPPNKLLLLQNLPAEANAEVLTQI 193
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F + GF EVRMV + GIAFVE+ +E A +A S + +G+ + +++A+K
Sbjct: 194 FGTYQGFTEVRMVPGRRGIAFVEFENENDAAIARDSTTGMLLGETSIKVSFARK 247
>gi|266618701|pdb|3IWN|C Chain C, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
gi|266618702|pdb|3IWN|D Chain D, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
Length = 91
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 79/89 (88%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+SAT
Sbjct: 3 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 62
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
A+ MQGFPFYDKPMRIQYAKT SDIIAK
Sbjct: 63 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 91
>gi|282403767|pdb|3L3C|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403770|pdb|3L3C|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403773|pdb|3L3C|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403776|pdb|3L3C|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
Length = 90
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 79/89 (88%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+SAT
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
A+ MQGFPFYDKPMRIQYAKT SDIIAK
Sbjct: 62 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 90
>gi|453081177|gb|EMF09226.1| small nuclear ribonucleo protein U [Mycosphaerella populorum
SO2202]
Length = 236
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 137/240 (57%), Gaps = 14/240 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+++PN T+Y+ NL+EK+KI L ++L +F + +++++A K++K +GQA++VF+ +
Sbjct: 3 DLAPNATLYVRNLDEKIKIPALIKALRDIFGEVNPVVDVIAKKSIKRRGQAFVVFESADA 62
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A A++ +QG +P+ + +AKT+S D T V E + E K+R + +
Sbjct: 63 AQEAMDTLQGLDVLGRPLELAFAKTRS------DATVVKEEGEEALEAHKKQRLAEKERK 116
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------PPNNILFVQNVPHDTT 184
QA A A A P S P AKS P A A PP+ IL ++++P D T
Sbjct: 117 QALEAQEAAAKSAKRAAEPSSLAERP--AKSSKPTAGAMADEYNPPHKILILRDLPSDYT 174
Query: 185 PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A+ F +FPG KEVRMV + G+AF EY DE++A VA +++ + +G + + +T+ +
Sbjct: 175 KEAVTAVFQRFPGLKEVRMVPGRSGLAFAEYNDEIEAAVAREAMHGVTLGDKTVRVTFQR 234
>gi|76156594|gb|AAX27773.2| SJCHGC09182 protein [Schistosoma japonicum]
Length = 239
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 80/99 (80%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PNNTIYINNLNEK+K D+LK+SL+AVF QFG IL+I+ +TLK +GQA++VF D+ SA+
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSAST 115
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
A+ MQGFP Y+KPMRI +AK SD+IAK GTFV R +
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
>gi|226469924|emb|CAX70243.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
gi|226488855|emb|CAX74777.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
Length = 333
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 80/99 (80%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PNNTIYINNLNEK+K D+LK+SL+AVF QFG IL+I+ +TLK +GQA++VF D+ SA+
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSAST 115
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
A+ MQGFP Y+KPMRI +AK SD+IAK GTFV R +
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN ILF+ N+P D+ L M F QF G++EVRMV + IAFVE+G+E++A+ A L
Sbjct: 256 PPNKILFLTNLPDDSDEAMLSMLFGQFTGYREVRMVPGRHDIAFVEFGNEVEASAAKLGL 315
Query: 229 QSLKIG-QQQLLITYAKK 245
Q I Q + IT+AKK
Sbjct: 316 QGFNIRPGQAIRITFAKK 333
>gi|226488853|emb|CAX74776.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
Length = 333
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 80/99 (80%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PNNTIYINNLNEK+K D+LK+SL+AVF QFG IL+I+ +TLK +GQA++VF D+ SA+
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSAST 115
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
A+ MQGFP Y+KPMRI +AK SD+IAK GTFV R +
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN ILF+ N+P D+ L M F QF G++EVRMV + IAFVE+G+E++A+ A L
Sbjct: 256 PPNKILFLTNLPDDSDEAMLSMLFGQFTGYREVRMVPGRHDIAFVEFGNEVEASAAKLGL 315
Query: 229 QSLKIG-QQQLLITYAKK 245
Q I Q + IT+AKK
Sbjct: 316 QGFNIRPGQAIRITFAKK 333
>gi|428171290|gb|EKX40208.1| hypothetical protein GUITHDRAFT_75811, partial [Guillardia theta
CCMP2712]
Length = 209
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 129/230 (56%), Gaps = 31/230 (13%)
Query: 8 QGNEISPNNTIYINNLNEK----VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWL 63
Q E+ PN T+YI N+NEK ++++LK L A+F+ +G IL+I+A +KGQA++
Sbjct: 1 QEEELPPNQTLYIRNINEKYSKKFRLEELKAKLKAIFRPYGEILDIVAMSNFYNKGQAFV 60
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE----RRKRHEEK 119
VFKD T ++ + G K M+I+YA++KSD+IAK +GTF R +
Sbjct: 61 VFKD--GHTLSLTSVGG----GKEMKIKYARSKSDVIAKLEGTFEVRRGDQMDEDDEDGG 114
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV 179
K + + H QA G N A PP + + P P+ ILF++N+
Sbjct: 115 DKSKGNAHGGWQAPSGQNQKSA------PP-----------APVHTGPLFPHPILFLENL 157
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
P D T + FS FPGFKEVR+V ++PGIAFVEY ++Q+ +AM LQ
Sbjct: 158 PLDITSDDVAAVFSPFPGFKEVRLVPSRPGIAFVEYESDVQSGMAMARLQ 207
>gi|327354834|gb|EGE83691.1| U2 small nuclear ribonucleoprotein B [Ajellomyces dermatitidis ATCC
18188]
Length = 313
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 132/252 (52%), Gaps = 34/252 (13%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+ + NL E++K++ LK++L +F ++G I++I+A LK KGQA++VF +V SAT A+E+
Sbjct: 50 VQVRNLEERIKVEPLKEALAEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSATRAIEE 109
Query: 78 MQGFPFYDKPMRIQYAKTKSD-IIAKADG-TFVPRERRKRHEEKGK-------------- 121
+ GF ++KPM + YA+T+SD I+ K G T + +RKR EKG+
Sbjct: 110 INGFELFEKPMVLDYARTRSDAIVLKEHGETELEAHKRKRLAEKGQFIFSFSFRLVVSKA 169
Query: 122 -----------KRKDQHDANQAGMGLNPAYAGAYGATPPLSQI-------PYPGGAKSVI 163
+RK +A +A L A G S++ P A VI
Sbjct: 170 LMADFHFFGATERKQAQEALEAQKKLKRGVAAPGGPEARPSKVTRGAGLKPSTATAAPVI 229
Query: 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
+ PPN ILF++ +P L F +F GFKEVRMV + GIAFVEY E A
Sbjct: 230 QDEYLPPNKILFLREIPDSLDQDGLTEIFGRFEGFKEVRMVPGRKGIAFVEYEAETGAIS 289
Query: 224 AMQSLQSLKIGQ 235
A ++ + +G+
Sbjct: 290 AKEATSGMPLGE 301
>gi|118396628|ref|XP_001030652.1| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila]
gi|89284963|gb|EAR82989.1| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 270
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 138/233 (59%), Gaps = 14/233 (6%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P T+YINNLN+K+ + +K L+ +F+QFG IL+I+ K+ +GQAW++FKD+ +AT
Sbjct: 50 TPKETLYINNLNDKINQEDMKYGLYFLFQQFGEILDIILKKSNTLRGQAWIIFKDITAAT 109
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A + + GF F+DK ++I +AK +S+I+ K +G +VP++++K+ K+ + +
Sbjct: 110 NAKKNLNGFLFFDKELKINFAKQRSEILDKLEGRWVPKKKQKKENNNNAKKVGEQE---- 165
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
+ L QIP ++ PNN+L ++++P T L+ F
Sbjct: 166 ---IGTEQKEQQQQKQQLQQIPL-----NIQQNELNQPNNVLILEDLPSFVTTDILKALF 217
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
Q+PGFKEVR++ A +AFVE+ E +ATVA+ LQ+ ++ Q L + YAK
Sbjct: 218 GQYPGFKEVRLI-APRKVAFVEFSQEDEATVALNGLQNFQLTPQVFLKLNYAK 269
>gi|33357758|pdb|1OIA|A Chain A, U1a Rnp Domain 1-95
gi|33357759|pdb|1OIA|B Chain B, U1a Rnp Domain 1-95
Length = 95
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 79/91 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIA 101
AT A+ MQGFPFYDKPMRIQYAKT SDIIA
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIA 95
>gi|224068350|ref|XP_002302718.1| predicted protein [Populus trichocarpa]
gi|222844444|gb|EEE81991.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 74/87 (85%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
++ G E+S N TIYINNLNEK+KID+LK++LHAVF QFG ILEILAFKTLKHKGQAW+VF
Sbjct: 12 SSTGTEVSSNMTIYINNLNEKIKIDELKKALHAVFSQFGKILEILAFKTLKHKGQAWVVF 71
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQY 92
+DV SA+ A+ +MQ FPFYDKPM Y
Sbjct: 72 EDVQSASNAMRQMQSFPFYDKPMVCLY 98
>gi|68074359|ref|XP_679094.1| u1 small nuclear ribonucleoprotein a [Plasmodium berghei strain
ANKA]
gi|56499751|emb|CAH97936.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium berghei]
Length = 371
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 141/289 (48%), Gaps = 58/289 (20%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+YI NLN+K+K + +K+SL +F Q+G I +I+ K+ KGQAW+V+ + S+
Sbjct: 86 IPPNETLYIKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESS 145
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR-----------ERRKR----- 115
T A+ +QGF + K M+I Y+ KSD+ K +GTF+ R ER K+
Sbjct: 146 TKALNSLQGFVLFGKIMQINYSHNKSDVHTKRNGTFIERSKDPKKPKQIIEREKKQKEIF 205
Query: 116 ------------------HEEKGKKRKD----QHD-------ANQAGM-------GLNPA 139
H ++ +K K+ Q D A Q + G +P
Sbjct: 206 EKMQQNYFEMQINHIKAMHNDELEKNKNFDLSQMDKETLIARAQQKAIEEKKRKKGEDPL 265
Query: 140 YAGAYGATPPLSQIP---YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP 196
A P + P Y + + I P P ILFV+NV + A F F
Sbjct: 266 QNNANYNIPSIH--PPHFYAMNSYAPIQNNPVIPYKILFVENVDENVNTEAFNDIFKAFS 323
Query: 197 GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
GF E R++ + +AFV+Y DE AT AM++LQ+ ++ +L I+YAK+
Sbjct: 324 GFVEARIIPQR-NVAFVDYTDESSATSAMKALQNYELQGSKLKISYAKR 371
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
Q N + P +++ N++E V ++ + +FK F +E + + + A++ + D
Sbjct: 291 QNNPVIPYKILFVENVDENVNT----EAFNDIFKAFSGFVEA---RIIPQRNVAFVDYTD 343
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAK 94
+SAT+A++ +Q + ++I YAK
Sbjct: 344 ESSATSAMKALQNYELQGSKLKISYAK 370
>gi|451856476|gb|EMD69767.1| hypothetical protein COCSADRAFT_155918 [Cochliobolus sativus
ND90Pr]
Length = 244
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 126/238 (52%), Gaps = 23/238 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P TIY+NNL E+VKID +KQ+L VF+ +G IL+++A +LK KGQA++VF +A
Sbjct: 23 PIETIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALE 82
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG-TFVPRERRKRHEEKGKKRKDQHDANQA 132
AVE+M GF Y K MR+ AKT SD K +RKR K KR ++ QA
Sbjct: 83 AVEEMNGFEMYGKVMRVHRAKTHSDETVKRKAPDMFEDHKRKRLTLKDFKRAEEDAKAQA 142
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKS---VIPEAPAPPNNILFVQNVPHDTTPMALQ 189
NP A P AK+ +P+ PN LF+QN+P D L
Sbjct: 143 ----NPVAAEK------------PRAAKTGAAAVPDEYVRPNKTLFLQNIPRDVDEDDLT 186
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
F +F GFKEVR+V + +AF E+ +E A A ++ + IG + + +TY ++
Sbjct: 187 TIFERFEGFKEVRLVSVR-AVAFAEFENEQFAITAKEATANTPIGAEGKPMKVTYQRQ 243
>gi|70947892|ref|XP_743519.1| u1 small nuclear ribonucleoprotein a [Plasmodium chabaudi chabaudi]
gi|56523052|emb|CAH75488.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium chabaudi
chabaudi]
Length = 444
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 136/287 (47%), Gaps = 54/287 (18%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+Y+ NLN+K+K + +K+SL +F Q+G I +I+ K+ KGQAW+V+ + S+
Sbjct: 159 IPPNETLYVKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESS 218
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR-----------ERRKRHEEKG 120
T A+ +QGF + K M+I Y+ KSD+ K +GTFV R ER ++ +E
Sbjct: 219 TKALNALQGFVLFGKIMQINYSHNKSDVHTKRNGTFVERSKEPKKPKQIIERERKQKEIF 278
Query: 121 KK----------------RKDQHDAN---------------QAGMGLNPAYAGAYGATPP 149
+K D D N +A N G P
Sbjct: 279 EKMQQNYFEMQMNQIKAMHNDALDKNKNFDLSQMDKEALIARAQQKANEEKKRKKGEDPL 338
Query: 150 LS----QIP-------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF 198
+ IP Y A + I P P ILFV+NV + A F F GF
Sbjct: 339 QNNLNYNIPNIHHPQFYAMNAFAQIQANPVIPYRILFVENVDENVNTEAFNDIFKAFSGF 398
Query: 199 KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
E R++ + +AFV+Y DE AT AM++LQ ++ +L I+YAK+
Sbjct: 399 VEARIIPQR-NVAFVDYTDESSATSAMKALQDYELQGSKLKISYAKR 444
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
Q N + P +++ N++E V ++ + +FK F +E + + + A++ + D
Sbjct: 364 QANPVIPYRILFVENVDENVNT----EAFNDIFKAFSGFVEA---RIIPQRNVAFVDYTD 416
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAK 94
+SAT+A++ +Q + ++I YAK
Sbjct: 417 ESSATSAMKALQDYELQGSKLKISYAK 443
>gi|290992905|ref|XP_002679074.1| predicted protein [Naegleria gruberi]
gi|284092689|gb|EFC46330.1| predicted protein [Naegleria gruberi]
Length = 212
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 139/236 (58%), Gaps = 41/236 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PNNTIYINN+NEK+K+ LK+ L+++F QFG +L+++A + K +GQA++VFKDVA+
Sbjct: 15 QIMPNNTIYINNINEKIKVPTLKKQLYSMFGQFGEVLDVIASRYEKTRGQAFIVFKDVAT 74
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
ATAA +K+ G+ F+DKPM I +AK+KSD AK DG + E K K++ Q +
Sbjct: 75 ATAAKKKLNGYVFHDKPMHINFAKSKSDATAKLDGNY--------EEYKAKRKVKQESSK 126
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA--L 188
Q+ N P+++LF++N+P D + L
Sbjct: 127 QSRREENLV------------------------------PSSVLFIENLPRDVEKSSELL 156
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ F+ + G+K++R+V K G+AFVEY QAT A + LQS KI QQ + I++ K
Sbjct: 157 ETLFNNYDGYKKLRLVGEK-GVAFVEYETIEQATSAREGLQSWKIKQQPMRISFKK 211
>gi|403373310|gb|EJY86574.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 303
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 140/249 (56%), Gaps = 28/249 (11%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+ NLNE+VK LK +L+ +F +G ++E+ A K +K +GQA++V +D +A +
Sbjct: 66 PNPTLYVQNLNERVKAADLKNALYQLFSNYGEVIEVHAKKNIKMRGQAFVVCQDEEAADS 125
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF-----VPRERRKRHEEKGKKRKDQHD 128
A++ ++G+ F+ KP+R+ YAKT+SD+ AK GTF RE R++HE K ++ K +
Sbjct: 126 AIQALRGYMFFGKPLRLNYAKTRSDVTAKMRGTFDEEVKAKRELRRQHELKQRQLKQKRK 185
Query: 129 ANQAGMGL---NPAYAGAYGATPPLSQIP--YPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
+ L N G P + +I G +S NN+LF++ + T
Sbjct: 186 IIDKFLKLRSDNEEMQNLRGG-PSIQKIAGFSVNGQES---------NNLLFIEGLSKRT 235
Query: 184 TPMALQMFFSQ--FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ---- 237
L FSQ GFKEVR + A+ +AFVEY D+ A++AM +LQ +I +
Sbjct: 236 PTSILNEIFSQAVIGGFKEVRHI-AEKEVAFVEYEDDHVASIAMNALQGYQIKESNGETT 294
Query: 238 -LLITYAKK 245
L I++AK+
Sbjct: 295 VLSISFAKR 303
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 156 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ-MFFSQFPGFKEVRMVEAKPGI---- 210
P + ++ E PPN L+VQN+ L+ + F + EV V AK I
Sbjct: 52 PSMMQKIMEEPLNPPNPTLYVQNLNERVKAADLKNALYQLFSNYGEVIEVHAKKNIKMRG 111
Query: 211 -AFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
AFV DE A A+Q+L+ + L + YAK
Sbjct: 112 QAFVVCQDEEAADSAIQALRGYMFFGKPLRLNYAK 146
>gi|384496525|gb|EIE87016.1| hypothetical protein RO3G_11727 [Rhizopus delemar RA 99-880]
Length = 292
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 17/242 (7%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
V Q +P+ T+Y+ +K SL +FKQFG +L+++A + ++ +GQA++
Sbjct: 67 VDKQPLNTTPSRTVYV----------IMKNSLRTLFKQFGEVLDVVAHRNIRMRGQAFVA 116
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRK 124
+ D SA A++++Q F YDKPM +QY++ +SD+ AK DG + + H + RK
Sbjct: 117 YPDQESADKAIKELQHFVLYDKPMIVQYSRNRSDVHAKRDGDY------EIHYKARIARK 170
Query: 125 DQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTT 184
++ P + + A + + IP+ PPN+ILF+QN+P T
Sbjct: 171 EEVSKMPLPGSHKPTFKSSKRANKTSRGKGTSQHSTAHIPDEYLPPNSILFLQNLPETIT 230
Query: 185 PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYA 243
L F ++PGF+EVR V AK IAFVEY +E+Q+ VA L +G Q L +T+A
Sbjct: 231 QQQLVDLFQRYPGFREVRTVPAKKSIAFVEYENEIQSAVARAELSGYFLGPDQALKVTFA 290
Query: 244 KK 245
+K
Sbjct: 291 RK 292
>gi|355721044|gb|AES07134.1| small nuclear ribonucleoprotein polypeptide B [Mustela putorius
furo]
Length = 120
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 86/104 (82%)
Query: 4 EVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWL 63
E N +I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA++
Sbjct: 5 EQFNSSMDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFV 64
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+FK++ S+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF
Sbjct: 65 IFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 108
>gi|452003034|gb|EMD95491.1| hypothetical protein COCHEDRAFT_1200551 [Cochliobolus
heterostrophus C5]
Length = 244
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 125/238 (52%), Gaps = 23/238 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P TIY+NNL E+VKID +KQ+L VF+ +G IL+++A +LK KGQA++VF +A
Sbjct: 23 PIETIYVNNLEERVKIDTMKQALIRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALE 82
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG-TFVPRERRKRHEEKGKKRKDQHDANQA 132
AVE M GF Y K MR+ AKT SD K +RKR K KR ++ QA
Sbjct: 83 AVEDMNGFEMYGKVMRVHRAKTHSDETVKRKAPDMFEDHKRKRLTLKDFKRAEEDAKAQA 142
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKS---VIPEAPAPPNNILFVQNVPHDTTPMALQ 189
NP A P AK+ +P+ PN LF+QN+P D L
Sbjct: 143 ----NPVAAEK------------PRAAKTGAAAVPDEYVRPNKTLFLQNIPRDVDEDDLT 186
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
F +F GFKEVR+V + +AF E+ +E A A ++ + IG + + +TY ++
Sbjct: 187 SIFERFEGFKEVRLVSVR-AVAFAEFENEQFAITAKEATANTPIGAEGKPMKVTYQRQ 243
>gi|330933232|ref|XP_003304096.1| hypothetical protein PTT_16533 [Pyrenophora teres f. teres 0-1]
gi|311319509|gb|EFQ87793.1| hypothetical protein PTT_16533 [Pyrenophora teres f. teres 0-1]
Length = 244
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 126/238 (52%), Gaps = 23/238 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P TIY+NNL E+VKID +KQ+L VF+ +G IL+++A +LK KGQA++VF +A
Sbjct: 23 PIETIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALE 82
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG-TFVPRERRKRHEEKGKKRKDQHDANQA 132
AVE+M GF Y K M++ AKT SD K +RKR K KR ++ QA
Sbjct: 83 AVEEMNGFEMYGKVMKVHRAKTHSDETVKRKAPDMFEDHKRKRLTLKDFKRAEEDAKAQA 142
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKS---VIPEAPAPPNNILFVQNVPHDTTPMALQ 189
NP A P AK+ IP+ PN LF+QN+P D L
Sbjct: 143 ----NPVAA------------EKPRAAKTGAAAIPDEYVRPNKTLFLQNIPRDVDEDTLT 186
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
F +F GFKEVR+V + +AF E+ +E A A ++ + IG + + +TY ++
Sbjct: 187 TIFERFEGFKEVRLVSVR-AVAFAEFENEQFAITAKEATANNPIGAEGKPMKVTYQRQ 243
>gi|190345771|gb|EDK37715.2| hypothetical protein PGUG_01813 [Meyerozyma guilliermondii ATCC
6260]
Length = 220
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 129/238 (54%), Gaps = 29/238 (12%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNEKV ++ L++SL ++F +FG +L+I A K +K KGQA++ F + + + AA+E
Sbjct: 3 TLYIRNLNEKVSVNTLRRSLESIFAKFGEVLQITANKNIKMKGQAFVTFANKSQSAAAME 62
Query: 77 KMQGFPFYDKPMRIQYAKTKSD---IIAKADGTFVPR---ERRKRHEEKGKKRKDQHDAN 130
K+Q + + KP+ I YAK SD I K D V + E+ KR KRK Q+D
Sbjct: 63 KLQSYELFQKPIEISYAKKNSDQYFIAVKKDTETVEKRKNEKAKRESTSANKRKVQND-- 120
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNVPHDTTPMALQ 189
P +A A P P K I + + PPNN+L +QN D+ + LQ
Sbjct: 121 ------EPDFAAA----------PEPIKKKIKIEDWKSLPPNNVLLLQNTTVDSNDV-LQ 163
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLITYAKK 245
FF FPGF R V+A ++F+E+ E +T +Q I + + ++TYAKK
Sbjct: 164 AFFGSFPGFINTRFVKA-LNLSFIEFESEELSTKCLQGTTKEDISKLGPEAVLTYAKK 220
>gi|6137598|pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme
Length = 95
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 78/92 (84%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 2 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
AT A+ QGFPFYDKP RIQYAKT SDIIAK
Sbjct: 62 ATNALRSXQGFPFYDKPXRIQYAKTDSDIIAK 93
>gi|6730009|pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA VIRUS GENOMIC
Ribozyme Complex
Length = 97
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 78/92 (84%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSS 63
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
AT A+ QGFPFYDKP RIQYAKT SDIIAK
Sbjct: 64 ATNALRSXQGFPFYDKPXRIQYAKTDSDIIAK 95
>gi|192988518|pdb|3CUL|A Chain A, Aminoacyl-Trna Synthetase Ribozyme
gi|192988519|pdb|3CUL|B Chain B, Aminoacyl-Trna Synthetase Ribozyme
gi|192988525|pdb|3CUN|A Chain A, Aminoacyl-Trna Synthetase Ribozyme
gi|192988526|pdb|3CUN|B Chain B, Aminoacyl-Trna Synthetase Ribozyme
gi|210061026|pdb|3EGZ|A Chain A, Crystal Structure Of An In Vitro Evolved Tetracycline
Aptamer And Artificial Riboswitch
Length = 98
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 78/92 (84%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SLHA+F +FG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
AT A+ QGFPFYDKP RIQYAKT SDIIAK
Sbjct: 65 ATNALRSXQGFPFYDKPXRIQYAKTDSDIIAK 96
>gi|189205961|ref|XP_001939315.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975408|gb|EDU42034.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 244
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 126/238 (52%), Gaps = 23/238 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P TIY+NNL E+VKID +KQ+L VF+ +G IL+++A +LK KGQA++VF +A
Sbjct: 23 PIETIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALE 82
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG-TFVPRERRKRHEEKGKKRKDQHDANQA 132
AVE+M GF Y K M++ AKT SD K +RKR K KR ++ QA
Sbjct: 83 AVEEMNGFEMYGKVMKVHRAKTHSDETVKRKAPDMFEDHKRKRLTLKDFKRAEEDAKAQA 142
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKS---VIPEAPAPPNNILFVQNVPHDTTPMALQ 189
NP A P AK+ IP+ PN LF+QN+P D L
Sbjct: 143 ----NPIAA------------EKPRAAKTGAAAIPDEYVRPNKTLFLQNIPRDVDEDTLT 186
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
F +F GFKEVR+V + +AF E+ +E A A ++ + IG + + +TY ++
Sbjct: 187 AIFERFEGFKEVRLVSVR-AVAFAEFENEQFAITAKEATANNPIGAEGKPMKVTYQRQ 243
>gi|334312138|ref|XP_003339722.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Monodelphis
domestica]
Length = 180
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 13/192 (6%)
Query: 55 LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRK 114
+K +GQA+++FK++ S+T A+ ++QGFPFY KPMRIQYAKT SD+I+K GTF +E++K
Sbjct: 1 MKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDVISKMRGTFADKEKKK 60
Query: 115 RHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNIL 174
++ + + AN+ P A G + Q+P PPN IL
Sbjct: 61 EKKKAKSLEQTANAANKKPGQATPNSANTQGNSTQNPQVP------------DYPPNYIL 108
Query: 175 FVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
F+ N+P +T M L M F+Q+P FKEVR+ + IAFVE+ ++ QA A +LQ KI
Sbjct: 109 FLNNLPEETNEMMLSMLFNQYPVFKEVRLGPGRHDIAFVEFENDGQAGAARDALQGFKIT 168
Query: 235 QQQLL-ITYAKK 245
+ ITYAKK
Sbjct: 169 PSHAMKITYAKK 180
>gi|12836810|dbj|BAB23823.1| unnamed protein product [Mus musculus]
Length = 101
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 85/100 (85%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADK 101
>gi|321265410|ref|XP_003197421.1| RNA binding protein [Cryptococcus gattii WM276]
gi|317463901|gb|ADV25634.1| RNA binding protein, putative [Cryptococcus gattii WM276]
Length = 286
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 128/238 (53%), Gaps = 18/238 (7%)
Query: 6 ANQGNEISPNN-------TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHK 58
A++ E PN T+Y+ NLNEKV+I +K++L+ +FK + + I+A ++ +
Sbjct: 42 ADEEEEEDPNRVPDNACETLYLQNLNEKVRIPVMKETLYNLFKPYRPLQPIIAHHNIRMR 101
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER--RKRH 116
GQA++ F D+ SA A + + FP Y K ++I++AK SD I K G E R+R
Sbjct: 102 GQAFISFPDIESANEARKDVNEFPLYGKSVQIKFAKGLSDSIVKRKGDEKEFEEHTRRRL 161
Query: 117 EEKGKKRKDQHDANQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
EEK KRK+ +A L AG G P + +P+ PPN++LF
Sbjct: 162 EEKKLKRKNNPLRQKAQEKLRADTTAGTTG--------PAAKKQRLQMPDEYLPPNSVLF 213
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
VQN+P TT L+ F PG E+R + AK IAFVE+ DE ATVA +L + KI
Sbjct: 214 VQNLPDGTTSEDLREVFEVHPGLIEIRTIPAKKDIAFVEFADEGAATVAKDALHNFKI 271
>gi|27692318|gb|AAH08311.1| Similar to small nuclear ribonucleoprotein polypeptide B'', partial
[Homo sapiens]
Length = 109
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 84/97 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98
>gi|58262246|ref|XP_568533.1| RNA binding protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134118674|ref|XP_771840.1| hypothetical protein CNBN0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254444|gb|EAL17193.1| hypothetical protein CNBN0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230707|gb|AAW47016.1| RNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 285
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 15/235 (6%)
Query: 14 PNN---TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
P+N T+Y+ NLNEKV+I +K++L+ +FK + + I+A ++ +GQA++ F D+ S
Sbjct: 54 PDNACETLYLQNLNEKVRIPVMKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFSDIES 113
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER--RKRHEEKGKKRKDQHD 128
A A + + FP Y K ++I++AK SD I K G E ++R EEK KRK+
Sbjct: 114 ANEARKDVNEFPLYGKSIQIKFAKGLSDSIVKRKGDEKEFEEHTKRRLEEKKLKRKNNPL 173
Query: 129 ANQAGMGLNP-AYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
+A L AG G P + +P+ PPN++LFVQN+P TT
Sbjct: 174 RQKAQAKLRADTTAGTAG--------PAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTSED 225
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLIT 241
L+ F PG E+R + AK IAFVE+ DE AT+A +L + KI G+ ++ ++
Sbjct: 226 LREVFEVHPGLIEIRTIPAKKDIAFVEFADEGAATIAKDALHNFKIDGETKMKVS 280
>gi|328854301|gb|EGG03434.1| hypothetical protein MELLADRAFT_109264 [Melampsora larici-populina
98AG31]
Length = 364
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 134/254 (52%), Gaps = 25/254 (9%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+NNLNEKVKI LKQ+L + K FG +L+++A ++++ +GQA++ F + A AV+
Sbjct: 111 TVYLNNLNEKVKIPILKQTLKNLLKNFGPVLDVVAHQSVRMRGQAFVAFPEREMAAKAVK 170
Query: 77 KMQGFPFYDKPMR--------------IQYAKTKSDIIAKAD-----GTF----VPRERR 113
+++GFP Y KP R I +A+T +D + K TF + +++R
Sbjct: 171 EVKGFPLYGKPYRTLLRLLYYATSSYEIAFARTPADAVVKRKTPDEYDTFKEERLTKKKR 230
Query: 114 KRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSV-IPEAPAPPNN 172
R E +K+ + AG T + G + V +P+ PPN
Sbjct: 231 SRRENPLRKKAFAQKEAARIAAESAIAAGGVAPTTSATAASTNSGRRIVQMPDEYQPPNK 290
Query: 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
ILFVQN+P + AL++ F Q+ EVR + + IAFVEY D + VA +L + K
Sbjct: 291 ILFVQNLPENAGKDALEVLFKQYANLVEVRTIPGRATIAFVEYTDATSSGVAKDALHNYK 350
Query: 233 I-GQQQLLITYAKK 245
G+ ++ +T+AK+
Sbjct: 351 FDGEHKIKVTFAKQ 364
>gi|123505091|ref|XP_001328901.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121911850|gb|EAY16678.1| hypothetical protein TVAG_066830 [Trichomonas vaginalis G3]
Length = 238
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 16/239 (6%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
+NT+YI +N+ V I+QL + A F +G I++I A K +K +GQAW+ ++++ SA A
Sbjct: 7 SNTLYIKRINDNVSINQLILHVFAYFSPYGQIIDISASKAIKKRGQAWVTYQNIESAINA 66
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM 134
+ G + P+ IQ+AK ++ K +GT+ RRK + + RK
Sbjct: 67 KRDLNGIYIFSTPISIQFAKKRNINTLKLNGTYNSYGRRKEIIQDNEVRK-------LTT 119
Query: 135 GLNPAY--AGAYGATPPLSQIPYPGGAK---SVIPEAPA----PPNNILFVQNVPHDTTP 185
G P + G ++++ P K ++ E P PN ILF+QN+P +T
Sbjct: 120 GPIPYHWDIDMGGDDEEVTEMVRPLVQKISQEIVEETPKVTLQAPNKILFIQNIPENTDK 179
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
L F QFPGF EVR + K IAFVEY E Q+ VA+Q L +I L I ++K
Sbjct: 180 AVLDFLFGQFPGFVEVRTLPGKQTIAFVEYKTEEQSAVAIQELNGFEIENHHLTIQFSK 238
>gi|298707794|emb|CBJ30225.1| RNA binding / nucleic acid binding [Ectocarpus siliculosus]
Length = 252
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 83/100 (83%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N+TIY++NLNEK+K LK+SLH+VF QFG I++I+A + LK KGQAW+VF + + AT A
Sbjct: 8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNA 67
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRK 114
+ +MQGFPF++K MRIQ+AK++SD++ K GT+VPR++RK
Sbjct: 68 LRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRK 107
>gi|195554301|ref|XP_002076873.1| GD24751 [Drosophila simulans]
gi|194202891|gb|EDX16467.1| GD24751 [Drosophila simulans]
Length = 169
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 108/191 (56%), Gaps = 26/191 (13%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
+GQA+++FK++ SA+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK GTF R ++ +
Sbjct: 2 RGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKIK-- 59
Query: 118 EKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILF 175
A G + P A++ P + PPN ILF
Sbjct: 60 ---------------------PPKPAPGTDEKKDKKKKPSSAENSNPNTQTEQPPNQILF 98
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI
Sbjct: 99 LTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITP 158
Query: 236 QQLL-ITYAKK 245
+ IT+AKK
Sbjct: 159 THAMKITFAKK 169
>gi|358340305|dbj|GAA48228.1| U2 small nuclear ribonucleoprotein B'' [Clonorchis sinensis]
Length = 225
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 140/236 (59%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+Y+NNLN+KVK L+++L+ +F Q G +L+I+A KT+K +GQA+++++DV S
Sbjct: 2 DIRPNHTLYVNNLNDKVKKADLRKALYYLFGQHGRLLDIIAMKTMKMRGQAFIIYQDVQS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ +QGF + +PMRI YAK S I + G V E +KR EE+ +KRK + A
Sbjct: 62 ATTALRSLQGFNLFQRPMRIAYAKRDSTQIVQLKG--VSAEVQKRREEEREKRKRRKVAQ 119
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ A A A P G A +++ + PN+ILFV N+P +TT L M
Sbjct: 120 RLAAAAAAAQAATQAANGPAG----TGDALNLLDQ----PNHILFVTNLPEETTDAMLTM 171
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
FSQF GFKE R A G+ FVEY QA A + + K+ + I++AKK
Sbjct: 172 LFSQFSGFKEAR--RAPGGVWFVEYESAEQAAAARSAYEGFKLTPTHAMQISFAKK 225
>gi|336265862|ref|XP_003347701.1| hypothetical protein SMAC_03799 [Sordaria macrospora k-hell]
Length = 232
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 15/236 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NL E+VK + LK++L +F ++G +++I+A LK KGQA++VF SA A
Sbjct: 8 PIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 67
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSD--IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
A+E++QGF ++KPM + AKT+SD +I + + +R+R EK KKR + A Q
Sbjct: 68 AIEELQGFELFEKPMLVALAKTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEV-AEQ 126
Query: 132 AGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMF 191
P A A P +Q G + PA N+P D L
Sbjct: 127 QNRLKRPLQGAAPDARPAKNQ---RGAGLKATGQGPA-------AVNLPDDFGKDDLTAI 176
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL--QSLKIGQQQLLITYAKK 245
FS+F GF+EVR V + GIAFVEY E A A ++ +LK G++ + +TY ++
Sbjct: 177 FSRFEGFREVRTVPGRSGIAFVEYDAEAGAIAAKENTAGMALKNGEKVMKVTYQRQ 232
>gi|3659937|pdb|1A9N|B Chain B, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
gi|3659938|pdb|1A9N|D Chain D, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 96
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 82/95 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG 105
+T A+ ++QGFPFY KPMRIQYAKT SDII+K G
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRG 96
>gi|296005347|ref|XP_002809001.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
gi|225631938|emb|CAX64282.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
Length = 449
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 140/284 (49%), Gaps = 55/284 (19%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+YI NLN++VK D++K++L +F +G I +++ K+ KGQAW+V+ D A
Sbjct: 171 IPPNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECA 230
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR-------HEEKGKKRK 124
T A+ +QG+ + K M+I ++ KSDI AK DGTFV R + + E+K K+
Sbjct: 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFVERSKEPKKPKKILEREQKQKEIF 290
Query: 125 DQHDANQAGMGLN--PAYAGAYGATPP----LSQIPYPGGAKSVIPEAPAP--------- 169
+Q N M N G P LSQ+ +++I +A A
Sbjct: 291 EQMHKNYLEMQKNNFNMLNGNKEINKPEIIDLSQM----DKQTLIAKAQAKANEDKNKKN 346
Query: 170 ---PNN-------------------------ILFVQNVPHDTTPMALQMFFSQFPGFKEV 201
PNN ILFV+NV + A F + GF E
Sbjct: 347 EELPNNNIFSSYYQMNNIAPVQNYPVVMPYKILFVENVVENVDTQAFNDLFKNYAGFVEA 406
Query: 202 RMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
R++ + +AFV++ DE AT AM+++Q+ ++ +L I+YAK+
Sbjct: 407 RIIPQR-NVAFVDFTDETTATFAMKAVQNYELQGSKLKISYAKR 449
>gi|260940453|ref|XP_002614526.1| hypothetical protein CLUG_05304 [Clavispora lusitaniae ATCC 42720]
gi|238851712|gb|EEQ41176.1| hypothetical protein CLUG_05304 [Clavispora lusitaniae ATCC 42720]
Length = 230
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 130/238 (54%), Gaps = 32/238 (13%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
+T+Y+NNLNEKV +++LK L+++F ++G +++I A + LK KGQA++ + D S+ A+
Sbjct: 17 DTLYVNNLNEKVSLNKLKAVLNSLFGRYGKVIQITAHRNLKMKGQAFVTYADPKSSDKAL 76
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF---VPRERRKRHEEKGKKRKDQHDANQA 132
K+QG P + KP+RI +AK SD + F R+ K+ E+ +K K+Q
Sbjct: 77 RKLQGRPVFKKPIRITWAKASSDEYNRLLQNFDAIAKRQELKKERERLRKEKEQQKP--- 133
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGG---AKSVIPEAPA-PPNNILFVQNVP-HDTTPMA 187
Q P PG +KS I + + PPNNIL +QN+ H +
Sbjct: 134 -------------------QTPQPGTSQMSKSQIKQWKSLPPNNILLLQNLADHQLSNEV 174
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
L FS F GF+ VR+++ + +AFV++ E AT ++ L S + L+TYAKK
Sbjct: 175 LDAIFSVFNGFERVRLIKFR-KLAFVDFDSETNATACLEKLGS-SDSLENALLTYAKK 230
>gi|237840841|ref|XP_002369718.1| U2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|95007435|emb|CAJ20656.1| Rnp (Rrm rna binding domain) containing protein, putative
[Toxoplasma gondii RH]
gi|211967382|gb|EEB02578.1| U2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221482936|gb|EEE21267.1| u2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
GT1]
gi|221503274|gb|EEE28972.1| u2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
VEG]
Length = 233
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 33/224 (14%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
++ PN T+Y NNLN+K+ L+ L+ F +G +LE++ T +GQA++VF D+
Sbjct: 30 GDVPPNQTLYCNNLNDKLHKQDLQACLYEFFSAYGLVLEVVVRGT-NMRGQAFVVFADLG 88
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
SATAA+ QG F KP+R+QYAKTKSD I K + F PR K +++ DA
Sbjct: 89 SATAALRAAQGKDFLGKPLRLQYAKTKSDAILKLNDQFKPR--------KPNAPRNKVDA 140
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
AG A G T S LF++N+P T +L
Sbjct: 141 G-AGSATKAKDGKATGETGQFS----------------------LFIENLPPKATKTSLD 177
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
+ F Q+ G E R++E + G+AFV++ + QA VAMQ +Q K+
Sbjct: 178 ILFGQYRGHTESRLIEGR-GVAFVDFSTQAQAAVAMQGMQGFKV 220
>gi|147902216|ref|NP_001085460.1| MGC80122 protein [Xenopus laevis]
gi|49257361|gb|AAH72799.1| MGC80122 protein [Xenopus laevis]
Length = 223
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 82/97 (84%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+T+YINNL +KVK +LK+SL+A+F QFG +++I+A KT+K +GQA+++FK+++S
Sbjct: 2 DIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ ++QGFPFY KPMRIQYAK+ SD++ K GTF
Sbjct: 62 ATNALRQLQGFPFYSKPMRIQYAKSDSDVVLKMKGTF 98
>gi|308800402|ref|XP_003074982.1| U2snrB small nuclear ribonucleoprotein U2B, putative (IC)
[Ostreococcus tauri]
gi|119358847|emb|CAL52253.2| U2snrB small nuclear ribonucleoprotein U2B, putative (IC)
[Ostreococcus tauri]
Length = 221
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 29/225 (12%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
++T+Y+NNL+EK+ +L+ +L++VF FG IL+I+A +T + +GQAW+V+ + A A
Sbjct: 9 SHTLYVNNLSEKISKQELRMALYSVFSSFGKILDIVAARTYRLRGQAWIVYDTMDEAQRA 68
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE------RRKRHEEKGKKRKDQHD 128
E +Q FPFYDKP++I +A SD+I + +G + R RR ++E+ + R+
Sbjct: 69 FEGLQNFPFYDKPLKIAFANLSSDVILRREGEQISRVASARVVRRAENQERERMRRTM-- 126
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
AG+ L+ + GA + + + + VQ +P TT L
Sbjct: 127 --MAGVLLS-----------------HEEGADCDV--SASKERKCILVQGLPAATTTHML 165
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
+ F QF GFK M + GI VE+ QA+ A+ LQ ++
Sbjct: 166 TLLFQQFLGFKSANMSAKEIGIGQVEFDTPAQASAALNGLQGFRL 210
>gi|68066442|ref|XP_675204.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56494251|emb|CAH97133.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
berghei]
Length = 192
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 47/223 (21%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+NNL EK+ ++ LK L+ F +G +L+++ K+ K +GQA+++F ++AS
Sbjct: 5 DIPPNQTLYVNNLEEKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIAS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A + ++G PF +K + I YAKTKS II K DGT+ P + K +++ N
Sbjct: 65 STLAYKNLKGKPFLNKNININYAKTKSKIIEKLDGTYNPIKNYKPANNY------ENNIN 118
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q LFVQN+P + AL++
Sbjct: 119 QF----------------------------------------TLFVQNLPDEINKNALEI 138
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
F+Q+PGF EVR + + +AF+++ VAM LQS KI
Sbjct: 139 LFNQYPGFSEVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFKI 180
>gi|452979111|gb|EME78874.1| hypothetical protein MYCFIDRAFT_144592, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 224
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 6/228 (2%)
Query: 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79
+ ++E++KI L Q +H F +FGTI++++A K LK KGQA++VF+ A A+E +Q
Sbjct: 1 VRGIDERIKIPTLIQEIHDTFGEFGTIIDVVAKKNLKAKGQAFVVFESPEEAEIAMEALQ 60
Query: 80 GFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRK-RHEEKGKKRKDQHDANQAGMGLN 137
GF +P+ I +AKT+SD I K DG E +K R EK +K+ ++ A A
Sbjct: 61 GFDLLGQPVTIAFAKTRSDATIKKDDGDEALEEWKKVRLAEKERKKAEEAAAEAAKPAKR 120
Query: 138 PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPG 197
PA A P S P A + + PPN L +++ P + L F++FPG
Sbjct: 121 PADAANLAERPAKSNTK-PSNA---MADEYLPPNKTLILRDFPDEYGKDELSALFARFPG 176
Query: 198 FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
FKEVR+V + G+AFVEY DE+ T A +++ ++G + + +TY ++
Sbjct: 177 FKEVRVVPGRKGLAFVEYEDELGGTAAKEAMHGQELGDKTIKVTYQRQ 224
>gi|145538301|ref|XP_001454856.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422633|emb|CAK87459.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 138/253 (54%), Gaps = 46/253 (18%)
Query: 6 ANQGNEIS-PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
A Q N+ S P T+Y+ LN+K+K++ LK L+ +F QFG +L+I+ KT K +GQA++V
Sbjct: 9 AQQINQDSAPKETLYVTGLNDKIKLEDLKFVLYILFSQFGEVLQIVMKKTQKLRGQAFIV 68
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH-------- 116
F+++ AT A + G YDKP+ I++A KS I + +G F ++++++
Sbjct: 69 FQNITYATNAKSALTGMMVYDKPLIIEFAYKKSVIFDRMEGKFYYKQKQQKELQPTLPTE 128
Query: 117 ---EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNI 173
E+K KK +D+ + N P +Q NN+
Sbjct: 129 LVKEKKQKKLEDKLNNN-----------------PVFNQ---------------GEVNNV 156
Query: 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
L ++++P T + L F Q+PG+ ++++ A+ G+AFVEY ++ QATVA++ L + K+
Sbjct: 157 LLIESLPPFVTEIMLSELFRQYPGYSLIKLISAR-GLAFVEYQNDDQATVALKGLNNFKV 215
Query: 234 G-QQQLLITYAKK 245
+ QL + YAKK
Sbjct: 216 TPECQLKVKYAKK 228
>gi|398391875|ref|XP_003849397.1| hypothetical protein MYCGRDRAFT_75568 [Zymoseptoria tritici IPO323]
gi|339469274|gb|EGP84373.1| hypothetical protein MYCGRDRAFT_75568 [Zymoseptoria tritici IPO323]
Length = 233
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 14/236 (5%)
Query: 14 PNNTIYINNLNEK-VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
PN T+Y+ NL E+ V I LK+ + + + GT+L+I A K+LK +GQA++V+ V AT
Sbjct: 7 PNATLYLRNLPERQVSIPLLKEGIREIVEDLGTVLDIRAGKSLKQRGQAFVVYSRVEEAT 66
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRK-RHEEKGKKRKDQHDAN 130
A + +Q + + +++QYA+ +SD + K DG E +K R EK +K
Sbjct: 67 EAHDILQDIELFGRKIQVQYARARSDATVQKDDGEEALAEHKKVRLAEKARK-------- 118
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGG-AKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
QA P A + +++ P A + + + PPN IL +++ P L
Sbjct: 119 QALEEAKPVKRAAERDS--IAERPAKANKAATAVADDYLPPNRILLLRDFPEGYGKTELT 176
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F ++PGFKE+RMV + G+AF EY +E Q+ A ++L + +G + +T+ KK
Sbjct: 177 ALFQRYPGFKEIRMVPGRAGLAFAEYEEETQSAAAREALNGMSMGDSKFKVTFQKK 232
>gi|237829859|ref|XP_002364227.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
ME49]
gi|211961891|gb|EEA97086.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
ME49]
gi|221487300|gb|EEE25532.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
GT1]
gi|221507093|gb|EEE32697.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
VEG]
Length = 385
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 77/101 (76%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
Q I PN TIYINN+N+KVK+ +LK++L ++FKQFG I +I+A + +GQAW+VF
Sbjct: 106 QDMSIPPNQTIYINNINDKVKLPELKENLRSMFKQFGEIRQIVAMSSFWRRGQAWIVFAS 165
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
V SAT A++ MQGF ++D+P+RI Y+ TKSDIIAK DGTF
Sbjct: 166 VESATKAIQGMQGFVYHDQPLRINYSVTKSDIIAKEDGTFT 206
>gi|255726088|ref|XP_002547970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133894|gb|EER33449.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 217
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 133/239 (55%), Gaps = 28/239 (11%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I P TIY+NNLNEKV I++LK+ L+ F +G IL+I AFKTLK KGQA++ F ++ SA
Sbjct: 2 IEPKKTIYVNNLNEKVSINKLKKELNKTFTPYGKILQITAFKTLKLKGQAFITFDNIESA 61
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDAN 130
++E + ++KP++I +A + SDI+ + + RER++ K KKRK + + N
Sbjct: 62 INSLE-LNNIEIFNKPIKITFANSNSDIVESDE---IIRERKQNKSLKTSKKRKLEDNGN 117
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ L ++ P N+IL +QN+ L+
Sbjct: 118 KDNSKLKTKTKKKLDMLNEWKEL---------------PSNHILLLQNINKFD---ELEE 159
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL---QSLKIG-QQQLLITYAKK 245
FF+ F GF+ +R+V+ K +AF+E+ +E AT +Q + Q ++ G + ++L+++AKK
Sbjct: 160 FFNDFNGFENIRVVKVK-NLAFIEFENEEMATNCLQQVKDDQLIQFGPEDEVLLSFAKK 217
>gi|320591314|gb|EFX03753.1| U1 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 236
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 130/238 (54%), Gaps = 19/238 (7%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
+ ++Y +NL E+VK + L+++L VF +FGT+++I+A + LK KGQA++V+ D +A A
Sbjct: 11 SGSVYAHNLEERVKPEVLREALQTVFAEFGTVIDIVAKQNLKAKGQAFIVYDDPDAAQTA 70
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE--RRKRHEEKGKKRKDQHDANQA 132
V + QGFP +DKPM + A+T+SD + G E +R+R E+ KK+ + Q
Sbjct: 71 VREAQGFPLFDKPMVLALARTRSDATVRRSGDEDELEAHKRRRIAERDKKKALEAAEEQK 130
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
+ T A +V+P+ PPN LFVQN+P D L F
Sbjct: 131 RL---------LQRTAAGGAGGAAAVAPAVVPDEYLPPNKTLFVQNLPEDCDADVLTGIF 181
Query: 193 SQFPGFKEVRMVEAKPG--IAFVEYGDEMQATVAMQSLQSLKIGQQQ---LLITYAKK 245
++ GF+EVR+V PG +AFVEY E A A ++ + +G+ + +TY ++
Sbjct: 182 GRYEGFREVRLV---PGRRLAFVEYDAEPGAITAKENTAGMLVGEADKRPIKVTYQRQ 236
>gi|401411093|ref|XP_003884994.1| putative small nuclear ribonucleoprotein U1A [Neospora caninum
Liverpool]
gi|325119413|emb|CBZ54966.1| putative small nuclear ribonucleoprotein U1A [Neospora caninum
Liverpool]
Length = 399
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 76/102 (74%)
Query: 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFK 66
Q I PN TIYINN+N+KVK+ +LK++L ++FKQFG I EI+A + +GQAW+VF
Sbjct: 119 TQDMTIPPNQTIYINNINDKVKLPELKENLRSMFKQFGEIREIVAMSSFWRRGQAWIVFA 178
Query: 67 DVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
V SAT A++ MQGF ++ +P+RI Y+ TKSDIIAK DGTF
Sbjct: 179 SVESATKAIQGMQGFVYHGQPLRINYSVTKSDIIAKEDGTFT 220
>gi|82914978|ref|XP_728920.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485600|gb|EAA20485.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 189
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 47/223 (21%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+NNL +K+ ++ LK L+ F +G +L+++ K+ K +GQA+++F ++AS
Sbjct: 5 DIPPNQTLYVNNLEDKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIAS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A + ++G PF +K + I YAKTKS II K DGT+ P +
Sbjct: 65 STLAYKNLKGKPFLNKNININYAKTKSKIIEKLDGTYNPIKN------------------ 106
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Y A ++Q LFVQN+P + AL++
Sbjct: 107 ---------YKSANNYENKINQFT-------------------LFVQNLPDEINKNALEI 138
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
F+Q+PGF EVR + + +AF+++ VAM LQS I
Sbjct: 139 LFNQYPGFSEVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFXI 180
>gi|82596021|ref|XP_726090.1| U1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii
17XNL]
gi|23481350|gb|EAA17655.1| u1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii]
Length = 508
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 123/268 (45%), Gaps = 54/268 (20%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+YI NLN+K+K + +K+SL +F Q+G I +I+ K+ KGQAW+V+ + S+
Sbjct: 183 IPPNETLYIKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESS 242
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR-----------ERRKRHEE-- 118
T A+ +QGF + K M+I Y+ KSD+ K +GTFV R ER K+ +E
Sbjct: 243 TKALNALQGFVLFGKIMQINYSHNKSDVHTKRNGTFVERSKEPKKPKQIIEREKKQKEIF 302
Query: 119 --------------------KGKKRKDQHDANQ---------AGMGLNPAYAGAYGATPP 149
+G +R D +Q A N G P
Sbjct: 303 EKMQQNYFEMQINHIKAMHNEGLERNKNFDLSQMDKETLIARAQQKANEEKKRKKGEDPL 362
Query: 150 LS----QIP-------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF 198
+ IP Y + I P P ILFV+NV + A F F GF
Sbjct: 363 QNNTNYNIPNIHPPQFYAMNNFAPIQNNPVIPYKILFVENVDENVNTEAFNDIFKAFSGF 422
Query: 199 KEVRMVEAKPGIAFVEYGDEMQATVAMQ 226
E R++ + +AFV+Y DE AT AM+
Sbjct: 423 VEARIIPQR-NVAFVDYTDESSATSAMK 449
>gi|401396957|ref|XP_003879947.1| hypothetical protein NCLIV_003960 [Neospora caninum Liverpool]
gi|325114355|emb|CBZ49912.1| hypothetical protein NCLIV_003960 [Neospora caninum Liverpool]
Length = 234
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 32/231 (13%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
P ++ PN T+Y NNLN+K+ L+ L+ F +G +LE++ T +GQA+
Sbjct: 23 PTAPTAAGDVPPNQTLYCNNLNDKLHKQDLQACLYEFFSAYGLVLEVVVRGT-NMRGQAF 81
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
+VF D++SATAA+ QG F KP+R+QYAKTKSD + K + + PR K
Sbjct: 82 VVFADLSSATAALRAAQGKDFLGKPLRVQYAKTKSDAVLKLNDQYKPR--------KPNV 133
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
+ + DA A G T S LF++N+P
Sbjct: 134 PRTKVDAGAGAAATKAKDGKATGETGQFS----------------------LFIENLPPK 171
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
T +L + F Q+ G E R++E + G+AFV++ + QA VAMQ +Q K+
Sbjct: 172 ATKTSLDILFGQYRGHTESRLIEGR-GVAFVDFSTQAQAAVAMQGMQGFKV 221
>gi|145343730|ref|XP_001416465.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576690|gb|ABO94758.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 220
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 114/230 (49%), Gaps = 21/230 (9%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
+T+Y+NNLNEKV +L+ +LHAVF FG +L+I+ T + +GQAW+V+ A A+
Sbjct: 10 HTLYVNNLNEKVPKQELRAALHAVFSPFGKVLDIVTANTYRLRGQAWIVYDTSMDANNAM 69
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH-EEKGKKRKDQHDANQAGM 134
+ +Q FPFYDKPM+I A T SD I R RR H E G R + NQ
Sbjct: 70 QSLQSFPFYDKPMKIVVANTTSDAI---------RRRRGEHIERDGAVRLSRKVENQERE 120
Query: 135 GLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQ 194
L A A AT + G K PP+ + VQ +P TT L + F Q
Sbjct: 121 RLRRKNATAENATR--HEPKAMDGMKR-------PPSTRIAVQGLPGATTTHMLALLFQQ 171
Query: 195 FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-GQQQLLITYA 243
F G+K+ M + G VE+ A A+ LQ ++ L +++A
Sbjct: 172 FSGYKDATMTR-ESGDGEVEFDTTANAVAALNGLQGFRLNANHSLTLSFA 220
>gi|189339509|pdb|2K3K|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd1
Length = 104
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 85/103 (82%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
A+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK GTF R ++
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKK 104
>gi|150863938|ref|XP_001382592.2| hypothetical protein PICST_40739 [Scheffersomyces stipitis CBS
6054]
gi|149385194|gb|ABN64563.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 220
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 26/234 (11%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
NTIY++NLN+KV + +L+QSL +F +FGTI++I A K LK KGQA++ F+ SA A+
Sbjct: 9 NTIYVHNLNDKVSLKKLRQSLDEIFNKFGTIIQITAHKNLKMKGQAFITFETAESAAKAL 68
Query: 76 EKMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM 134
K+Q ++KP++IQYAKT SD + P E RK E K K++ + A++
Sbjct: 69 VKLQNHQLFNKPIKIQYAKTNSDNYFTQVANDPKPIETRK--ELKAKQQTKKRTADE--- 123
Query: 135 GLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQ 194
S+ + PPN IL +QN+ L +F Q
Sbjct: 124 ----------------SEQKPQKKKIKIDDWKKLPPNKILLLQNLSGSVDQTKLSSYFEQ 167
Query: 195 FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ---QLLITYAKK 245
F GF R+V+A+ ++FVE+ ++ +T + + S+ + + + +TYAKK
Sbjct: 168 FAGFVTARLVKAR-NLSFVEFENDSASTECISKVDSVVLKENFGDEAFLTYAKK 220
>gi|223994655|ref|XP_002287011.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978326|gb|EED96652.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 267
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 134/250 (53%), Gaps = 28/250 (11%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT-----LKHKGQAWLVFKDVA 69
N T+Y++N++ +K LK+SL A+F + G +L+++ + +GQAW++F+ +
Sbjct: 27 NPTLYLSNIDWSIKKTLLKRSLLALFTRHGKVLDVICLRGDATGGRSLRGQAWVIFESQS 86
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP-----RERRKRHEEKGKKRK 124
+ATAA+E +GF F+ +P+ + YAK SD IAK +GT+ RE+RK E G
Sbjct: 87 AATAALEAERGFVFFGRPLMVNYAKDVSDRIAKRNGTYSKKTKDIREKRK-LEGDGGGGG 145
Query: 125 DQHDANQAGMGLNPAYAGAYGATPPLSQI--------PYPGGAKSVIPEAPAPPNNILFV 176
D A G G+N A P S + P P I A P++++
Sbjct: 146 DAKMARVDGSGVN-----ATTVNDPSSLVKKKEDVSAPTPSPKTGEI-TASTTPSSLILA 199
Query: 177 QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236
QN+P + + M LQM F Q G+K +++V+A G+A +E+ E QATVA++ L K+
Sbjct: 200 QNLPSECSDMMLQMLFQQHAGYKGLKLVKA--GMATIEFDSESQATVALKGLNGFKLTPS 257
Query: 237 QLL-ITYAKK 245
L +TY +
Sbjct: 258 ATLDLTYVAR 267
>gi|145536596|ref|XP_001454020.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421764|emb|CAK86623.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 130/244 (53%), Gaps = 43/244 (17%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P T+Y+ LN+K+K++ LK L+ +F QFG +L+++ KT K +GQA++VF+++ AT
Sbjct: 17 APKETLYVTGLNDKIKLEDLKFILYILFSQFGEVLQMVMKKTQKLRGQAFIVFQNITYAT 76
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH----------EEKGKK 122
A + G YDKP+ I++A KS I + +G F ++++ + +EK +K
Sbjct: 77 NAKAALSGMIVYDKPLIIEFAYKKSVIFDRIEGKFYYKQKQHKELQPTLPNELMKEKKQK 136
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
+ D+ N + NN+L ++++P
Sbjct: 137 KFDEKIQNSSNFN-------------------------------QGEINNVLLIESLPPF 165
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLIT 241
T + L F Q+PG+ ++++ A+ G+AFVEY ++ QATVA++ L + KI + QL +
Sbjct: 166 VTEIMLSELFRQYPGYSLIKLIPAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKVK 224
Query: 242 YAKK 245
YAKK
Sbjct: 225 YAKK 228
>gi|313238053|emb|CBY13172.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 36/233 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P +T+Y+ NLN+K+K +L + L+A+F +G +L+I+ K K +GQA++ +KD++ A
Sbjct: 5 TPCHTLYVKNLNDKIKKIELTRQLYAMFSTYGMVLDIMVSKAPKLRGQAFITYKDISDAA 64
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+++MQGFPFY+K M I +AK +S +I +A P++ R +E K A
Sbjct: 65 NALKRMQGFPFYEKAMMISFAKRESHVITQAKKYVPPKDERTLAKETNAKL--AAKKKPA 122
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
G PA ++V+N+P + L + F
Sbjct: 123 GDEEEPA--------------------------------ATIYVENLPDEANESMLNLLF 150
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244
SQFPGFK+ R + A G AFVE+ D AT A +LQ K+ + + +TYAK
Sbjct: 151 SQFPGFKKSRPIPAG-GKAFVEFADPGAATSAKDALQGFKVTPDRPIKLTYAK 202
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G+E P TIY+ NL ++ + L+ +F QF + + + G+A++ F D
Sbjct: 123 GDEEEPAATIYVENLPDEAN----ESMLNLLFSQFPGFKKS---RPIPAGGKAFVEFADP 175
Query: 69 ASATAAVEKMQGFPFY-DKPMRIQYAK 94
+AT+A + +QGF D+P+++ YAK
Sbjct: 176 GAATSAKDALQGFKVTPDRPIKLTYAK 202
>gi|67482465|ref|XP_656582.1| U1snRNP-specific protein [Entamoeba histolytica HM-1:IMSS]
gi|56473795|gb|EAL51198.1| U1snRNP-specific protein, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 232
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 20/225 (8%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YINNL++ +K ++++ SL+ VF +G +L++ K+LK +GQA++++ SA A+E
Sbjct: 22 TLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESAQFAME 81
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
+Q +D+PM I Y+K +SDII K G + RER+ + + ++ +H+ + +
Sbjct: 82 SLQNHELFDRPMHINYSKVESDIIVKKQGKEITRERKPKQIKVQIEKTLEHEESPINQDI 141
Query: 137 NPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP 196
+ PP S Y NN LF+++VP + + L+ F Q
Sbjct: 142 EKKESNE-TKLPPNSPTKY--------------TNNRLFIKSVPQNVSKQRLEELFKQQE 186
Query: 197 GFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240
GF EVR + K +AF+E+ DE+ + AMQ IGQ + +I
Sbjct: 187 GFVEVRYIVIKGNAVAFIEFKDEISSEKAMQK----GIGQSEGII 227
>gi|402079726|gb|EJT74991.1| small nuclear ribonucleoprotein [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 198
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 117/237 (49%), Gaps = 49/237 (20%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+Y+ NL E+VK + LK+ L +F +GTI++I+A L+ KGQA++VF D SA
Sbjct: 6 PISTVYVRNLEERVKPEALKEVLATIFSDYGTIVDIVAKTNLRAKGQAFVVFDDPDSAQR 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGT---FVPRERRKRHEEKGKKRKDQHDAN 130
AV+++QGF +D+PM + A+T+SD +A G+ F +RR+ E KK + A
Sbjct: 66 AVDEVQGFELFDRPMHLAIARTRSDATVRAAGSGEEFEAHKRRRVAEMDKKKALEAATAA 125
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q N AGA G P
Sbjct: 126 Q-----NKQAAGARGGKPAAG--------------------------------------- 141
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
F +FPGF+EVR+V + G+AFVEY E A A +S + +G + + +TY ++
Sbjct: 142 VFGRFPGFREVRLVPGRRGLAFVEYETEAGAIAAKESTAGMALGDEGKPVKVTYQRQ 198
>gi|145475381|ref|XP_001423713.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390774|emb|CAK56315.1| unnamed protein product [Paramecium tetraurelia]
Length = 270
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 7/232 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YIN LNEKV ++++Q+L A+F Q G +L+I+ K + +GQA+++ +D +A
Sbjct: 46 PNKTLYINRLNEKVTAEEMRQTLFALFSQSGKVLDIIVKKNILMRGQAFILMEDEEAAIK 105
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A + YDK M++ +AK KS I+K D + +E+ ++ + +K D Q
Sbjct: 106 AQKAFHNTQLYDKVMKVNFAKEKSYYISKGD--YEEKEKLPMSDKIKEHKKRIQDKRQRE 163
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
M A + PL+ Y S IP PN +LFV+ + H + L+ F
Sbjct: 164 MINQKQQREAPTISMPLAVNQYYYIFNSSIPNQ---PNKVLFVEGL-HLVDFVNLEQHFR 219
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F GF+E R ++ K G+AFVE+ DE+QAT + L + + L I+Y KK
Sbjct: 220 NFYGFREFRGIKPK-GVAFVEFEDELQATNCLNELNGTQFEEVTLQISYQKK 270
>gi|449709804|gb|EMD49000.1| U1snRNP, putative [Entamoeba histolytica KU27]
Length = 232
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 20/225 (8%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YINNL++ +K ++++ SL+ VF +G +L++ K+LK +GQA++++ SA A+E
Sbjct: 22 TLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESAQFAME 81
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
+Q +D+PM I Y+K +SDII K G + RER+ + + ++ +H+ + +
Sbjct: 82 SLQNHELFDRPMHINYSKVESDIIVKKQGKEITRERKPKQIKVQIEKTLEHEESPINQDI 141
Query: 137 NPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP 196
+ PP S Y NN LF+++VP + + L+ F Q
Sbjct: 142 EKKESNE-TKLPPNSPTKY--------------TNNRLFIKSVPQNVSKQRLEELFKQQE 186
Query: 197 GFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240
GF EVR + K +AF+E+ DE+ + A+Q IGQ + +I
Sbjct: 187 GFVEVRYIVIKGNAVAFIEFKDEISSEKAIQK----GIGQSEGII 227
>gi|392568273|gb|EIW61447.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 260
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 123/253 (48%), Gaps = 42/253 (16%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YI NLN+KVK ++L+ L+A+F +G IL+++A K K KGQA+LVF D+A ATA
Sbjct: 6 PNTTLYIKNLNDKVKKEELRAQLYALFTTYGRILDVVALKGPKMKGQAFLVFSDLAGATA 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP--------------------RER 112
A+ +G FYDKPM I+YAKTKS + + D FVP R+R
Sbjct: 66 ALRGCEGTVFYDKPMHIEYAKTKSYATLRREDPNFVPPTSIHVKNAPNARGLNGAEKRQR 125
Query: 113 RKRHEEKGKKRKDQHDANQ----AGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168
R +E ++ K + N M + GA P A IP A
Sbjct: 126 DDRMDEDARESKREKTDNSDDDGEEMEIEDDDEGAAKQAAP---------ANGQIPAAVQ 176
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA--------KPGIAFVEYGDEMQ 220
P+ L ++P + T L + F Q+ GF V++V + K +A+V +
Sbjct: 177 QPSARLMCIHLPQEVTDDVLSVLFQQYQGFHSVQVVPSPTPNAAGQKAKMAYVTFESPDL 236
Query: 221 ATVAMQSLQSLKI 233
ATVA +L +
Sbjct: 237 ATVAKDALDGFTL 249
>gi|145544152|ref|XP_001457761.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425579|emb|CAK90364.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 23/234 (9%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P T+Y+ LN+K+K++ LK L+ +F QFG +L+++ KT K +GQA++VF+++ AT
Sbjct: 17 APKETLYVTGLNDKIKLEDLKFVLYILFSQFGEVLQMVMKKTQKLRGQAFIVFQNITYAT 76
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A + G YDKP+ I++A KS I + +G F ++K+H+E
Sbjct: 77 NAKSALSGMIVYDKPLIIEFAYKKSVIFDRIEGKF--YYKQKQHKE-------------- 120
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
L P + S + + NN+L ++++P T + L F
Sbjct: 121 ---LQPTLPNELMKEKKQKKFEEKIQNSSNLNQGEI--NNVLLIESLPPFVTEIMLSELF 175
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
Q+PG+ ++++ A+ G+AFVEY ++ QATVA++ L + KI + QL + YAKK
Sbjct: 176 RQYPGYSLIKLIPAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKVKYAKK 228
>gi|448116767|ref|XP_004203101.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
gi|359383969|emb|CCE78673.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
Length = 218
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 23/232 (9%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
TIY+ NLN+++ +++LK +L F+ +G I+++ A K LK KGQA++ F+ S+ AVE
Sbjct: 7 TIYVRNLNDRISLNKLKPALEEKFQAYGRIIQLTAHKNLKMKGQAFITFESSESSKNAVE 66
Query: 77 KMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
K + KPM++ +AK+ SD + + P + RKRH K + Q
Sbjct: 67 KANNIILFGKPMQVSFAKSNSDNFYLQVEQNEEPVQERKRH-------KAELSEKQTASN 119
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQF 195
P A + +T L PPN IL +QN+ +DTT L +F +
Sbjct: 120 TKPTKAASKASTKDLQSWK------------DIPPNKILLLQNLRNDTTNQELNEYFDAY 167
Query: 196 PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQS--LQSLKIGQQQLLITYAKK 245
GF +R+V+ + + FVE+ +E +T +++ + LK +++TYAKK
Sbjct: 168 DGFINLRLVKIR-NLCFVEFENESASTKCLENADYERLKSFGDHIILTYAKK 218
>gi|242002414|ref|XP_002435850.1| U1 small nuclear ribonucleoprotein A, putative [Ixodes
scapularis]
gi|215499186|gb|EEC08680.1| U1 small nuclear ribonucleoprotein A, putative [Ixodes
scapularis]
Length = 96
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 68/78 (87%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINNLNEKVK D+LK+SL+A+F QFG IL+I+A KTLK +GQA++VFKD+ S
Sbjct: 3 DIRPNHTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKDLNS 62
Query: 71 ATAAVEKMQGFPFYDKPM 88
AT A+ MQGFPFYDKPM
Sbjct: 63 ATNALRSMQGFPFYDKPM 80
>gi|345313966|ref|XP_001517530.2| PREDICTED: hypothetical protein LOC100087647 [Ornithorhynchus
anatinus]
Length = 403
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Query: 27 VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86
++ D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V SAT A+ MQGFPFYDK
Sbjct: 184 LREDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVNSATNALRSMQGFPFYDK 243
Query: 87 PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK 121
PMRIQYAK+ SDII+K GT+V R+ RKR + K K
Sbjct: 244 PMRIQYAKSDSDIISKMKGTYVERD-RKREKRKPK 277
>gi|407040284|gb|EKE40055.1| U1snRNP-specific protein, putative [Entamoeba nuttalli P19]
Length = 232
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 22/226 (9%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YINNL++ +K ++++ SL+ VF +G +L++ K+LK +GQA++++ SA A+E
Sbjct: 22 TLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESAQFAME 81
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
+Q +D+PM I Y+K +SDII K G + RER+ + + ++ +H+
Sbjct: 82 SLQNHELFDRPMHINYSKVESDIIVKNQGKEITRERKPKQIKVQIEKTLEHEE------- 134
Query: 137 NPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP-PNNILFVQNVPHDTTPMALQMFFSQF 195
+P +++P P +P NN LF+++VP + L+ F Q
Sbjct: 135 SPINQDTEKKESNETKLP---------PNSPTKYTNNRLFIKSVPQSVSKQRLEELFKQQ 185
Query: 196 PGFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240
GF EVR + K +AF+E+ DE + AMQ IGQ + +I
Sbjct: 186 EGFVEVRYIVIKGNAVAFIEFKDETSSEKAMQK----GIGQSEGII 227
>gi|221054978|ref|XP_002258628.1| Small nuclear ribonucleoprotein (SnRNP) [Plasmodium knowlesi strain
H]
gi|193808697|emb|CAQ39400.1| Small nuclear ribonucleoprotein (SnRNP),putative [Plasmodium
knowlesi strain H]
Length = 192
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 47/227 (20%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+NNL EK+ ++ L+ L F +G +L+I+ K + +GQA++VF ++AS
Sbjct: 5 DIPPNQTLYVNNLEEKINVNDLRDLLFEYFCPYGNVLDIVIKKANQSRGQAFVVFNNIAS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A + ++G F +K + I YAKTKS I+ K DGT+ P
Sbjct: 65 STLAYKNLKGKLFLNKQININYAKTKSRIVEKLDGTYKPITN------------------ 106
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Y A G G +V LFVQN+P++ AL++
Sbjct: 107 ---------YKSATGH----------GSRINVFT---------LFVQNLPNEINKNALEI 138
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237
F+Q+PGF EVR + + +AFV++ VAM LQ+ K+ Q
Sbjct: 139 LFNQYPGFCEVRHIPGR-NVAFVDFSSYQNGEVAMNGLQNFKVTPQH 184
>gi|85000071|ref|XP_954754.1| U1 snRNP protein [Theileria annulata strain Ankara]
gi|65302900|emb|CAI75278.1| U1 snRNP protein, putative [Theileria annulata]
Length = 346
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 135/258 (52%), Gaps = 44/258 (17%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+YI N+N+++KID LK+ L +F ++G IL+I+A K+ +GQAW+VF +V S+
Sbjct: 46 IPPNQTLYIKNINDRIKIDVLKRDLMELFGKYGKILQIVAMKSFWRRGQAWIVFDNVESS 105
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR----KDQH 127
T A+ ++QGF Y ++I YA KSDI++ +GTFV R + + +K +R K +
Sbjct: 106 TQAMNELQGFKIYGHTLQINYALEKSDIVSIPEGTFVQRPKGPKKPKKILQREMMLKQLY 165
Query: 128 DANQAGMGL-----NPAYA-----GAYG-ATPPLS-----------------QIPY-PGG 158
++N + L NPA+ ++G + P++ +PY P
Sbjct: 166 NSNPSNPLLTQNPVNPAHNLMGNPESFGFSDAPVNNLNMGTMELQGQVVNNLNLPYQPHN 225
Query: 159 AKSVIPEAPAP----------PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
P +P N LFV+N+P + + + F PGF E +++ +K
Sbjct: 226 LTHPFPTHHSPGFSDDPSLMKRNRTLFVENLPDNISHNDVNNLFHNMPGFVETKLIASK- 284
Query: 209 GIAFVEYGDEMQATVAMQ 226
+AF+++ +E + ++Q
Sbjct: 285 HVAFIDFDNEFNSNYSLQ 302
>gi|259016065|gb|ACV89314.1| sans fille [Muscidifurax raptorellus]
Length = 109
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 85/158 (53%), Gaps = 51/158 (32%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ASAT A+ MQGFPFYDKPMRI Y+KT SDIIAK GTF
Sbjct: 3 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFT------- 55
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
E+ KK K+Q PPN ILF
Sbjct: 56 --ERPKKPKEQ------------------------------------------PPNQILF 71
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ N+P +T+ M L M F+QFPGFKEVR+V + IAFV
Sbjct: 72 LTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFV 109
>gi|156081688|ref|XP_001608337.1| U2 small nuclear ribonucleoprotein B'' [Plasmodium vivax Sal-1]
gi|148800908|gb|EDL42313.1| U2 small nuclear ribonucleoprotein B'', putative [Plasmodium vivax]
Length = 192
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 47/227 (20%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+NNL EKV + L+ L F +G +L+++ K + +GQA++VF VAS
Sbjct: 5 DIPPNQTLYVNNLEEKVNVQDLRDLLFEFFCPYGNVLDVVIKKANQSRGQAFVVFNTVAS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A + ++G F +K + I YAKTKS II K +GT+ K +
Sbjct: 65 STLAYKHLKGKLFLNKHININYAKTKSRIIEKLEGTYKSITNYK---------------S 109
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
AG+G + A + LFVQN+P++ AL++
Sbjct: 110 AAGLG---SRANVF----------------------------TLFVQNLPNEINKSALEI 138
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237
FSQ+PGF EVR + + +AFV++ VAM LQS K+ Q
Sbjct: 139 LFSQYPGFCEVRHIPGR-NVAFVDFSSYQNGEVAMSGLQSFKVTPQH 184
>gi|241953539|ref|XP_002419491.1| U2 small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223642831|emb|CAX43086.1| U2 small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 225
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 120/235 (51%), Gaps = 35/235 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P TIYINNLNEKV I++LK+ L F G IL+I A KTLK KGQA++ F+D+ SAT
Sbjct: 24 TPRQTIYINNLNEKVSINKLKKELQLTFDTCGKILQISALKTLKLKGQAFITFEDIPSAT 83
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+E KPM + YAK+ +D+I+ + +R E + KKRK ++
Sbjct: 84 KALE-FNKKDLLAKPMNVTYAKSDADVISTDESI------AQRKELRSKKRK----LDKM 132
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
G + L PPN+IL +QN+ H L++FF
Sbjct: 133 GTKNDKQIKKLRDEWKEL------------------PPNHILLIQNLEHFDD---LKIFF 171
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAKK 245
+F GF VR+V+ K +AF+E+ +E A + + Q +++++AKK
Sbjct: 172 EKFAGFDNVRLVKVK-SLAFIEFENEELAKSCLDQTTEEALIQFGHDVILSFAKK 225
>gi|294953699|ref|XP_002787894.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239902918|gb|EER19690.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 152
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 75/105 (71%)
Query: 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
QG NNT+Y+NNLN+K+K+D LK L +F FG IL + A K+ +GQA++ F++
Sbjct: 10 QGAAGGINNTLYVNNLNDKIKLDDLKPLLFELFASFGPILAVYAGKSQSRRGQAFIAFRE 69
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
++A A++ + GFPF DKP+R+ +A+ KSD++A+ADGTF PR R
Sbjct: 70 ASNAALAMKTLNGFPFLDKPLRVAFARVKSDVVARADGTFKPRRR 114
>gi|388855173|emb|CCF51304.1| related to small nuclear ribonucleoprotein snRNP U1A [Ustilago
hordei]
Length = 297
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 9/237 (3%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNEKVK++ +K +LH +F +GT+L +++ L+ +GQA++ +V +A A
Sbjct: 60 TLYIQNLNEKVKLETMKATLHNLFSNYGTVLSVVSHTNLRMRGQAFVSLDNVQAADKARR 119
Query: 77 KMQGFPFYDKPMRIQYAKTKSDII----AKADG----TFVPRERRKRHEEKGKKRKDQHD 128
+ FP Y K M+I +AK+KSD + K +G + +R E K R+
Sbjct: 120 EAHLFPLYGKAMKISFAKSKSDAVVLQKVKEEGGKESELFKTHKEERLEHKKMARRGNVL 179
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
+ A A G + A+ +P+ PPN LF+QN+P L
Sbjct: 180 RRRELEKKIRAKRAAAGEIAEPEKAAANKRAQQEMPDEYLPPNKTLFLQNIPDGVGKGEL 239
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
+ FS + G+ +V+ + K IAFVEY D + A +L G +L IT+A+
Sbjct: 240 ESLFSAYSGYVDVQTIPGKADIAFVEYADIPSSVTARGALNGYNFGAGDKLKITFAR 296
>gi|389583186|dbj|GAB65922.1| U2 small nuclear ribonucleoprotein B'' [Plasmodium cynomolgi strain
B]
Length = 262
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 46/227 (20%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+NNL EK+ + L+ L F +G +L+++ K + +GQA++VF +AS
Sbjct: 74 DIPPNQTLYVNNLEEKINVKDLRDLLFEFFCPYGNVLDVVIKKANQSRGQAFVVFNTIAS 133
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A + ++G F +K + I YAKTKS I+ K +GT+ P K
Sbjct: 134 STLAYKNLKGKLFLNKQININYAKTKSRIVEKLEGTYKPITNYK---------------- 177
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
S+ Y +V LF+QN+P++ AL++
Sbjct: 178 --------------------SETGYGSSTANVFT---------LFIQNLPNEINKNALEI 208
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237
F+Q+PGF EVR + + +AFV++ VAM LQS K+ Q
Sbjct: 209 LFNQYPGFCEVRHIPGR-NVAFVDFSSYQNGEVAMNGLQSFKVTPQH 254
>gi|71004576|ref|XP_756954.1| hypothetical protein UM00807.1 [Ustilago maydis 521]
gi|46095668|gb|EAK80901.1| hypothetical protein UM00807.1 [Ustilago maydis 521]
Length = 314
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+ NLNEKVK++ +K +L +F + T+L + A L+ +GQA++ DV +A A
Sbjct: 52 TLYVQNLNEKVKLETMKATLTNLFSNYATVLSVTAHTNLRMRGQAFVSLDDVHAADKARR 111
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIA----KADGTFVPRERRKRHEEKG--KKRKDQHDAN 130
+ FP Y K M+I +AK+KSD + K +G E K+H+E+ K+K + D
Sbjct: 112 EAHLFPLYGKAMKISFAKSKSDAVVLQKLKDEGGH-ESEMFKQHKEQRLQHKKKARRDNV 170
Query: 131 QAGMGLNPAYAGAYGATPPLSQ--IPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
L AT +SQ P + +P+ PPN +LF+QN+P L
Sbjct: 171 LRRKELEKKIRAKKAATGEISQPEKAAPKRTQQQMPDEYLPPNKMLFLQNIPEGVGKGEL 230
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
+ FS +PG+ +V+ + K IAFVE+ D + A +L G
Sbjct: 231 ESLFSAYPGYVDVQTIPGKAEIAFVEFADIPSSATARGALNGYNFG 276
>gi|124507237|ref|XP_001352215.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
gi|23505245|emb|CAD52025.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
Length = 193
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 46/223 (20%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+NNL +K+ ++ LK L+ F +G I++I K+ K +GQA++VF ++AS
Sbjct: 5 DIPPNQTLYVNNLEDKINVNDLKFLLYEFFCPYGNIIDINIKKSNKGRGQAFIVFNNIAS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A + ++G F K + I YAKTKS II K +GT+ P K K +H +N
Sbjct: 65 STLAYKNLKGKMFLKKNININYAKTKSTIIQKIEGTYNPLLNYKS------KHNIEHKSN 118
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
L VQN+P + AL++
Sbjct: 119 LIYT---------------------------------------LLVQNLPDEINKNALEI 139
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
F+Q+PGF EVR + K IAFV++ + A ++M LQ+ KI
Sbjct: 140 LFNQYPGFYEVRYIPGK-NIAFVDFTAQEHAEISMTGLQNFKI 181
>gi|169611634|ref|XP_001799235.1| hypothetical protein SNOG_08932 [Phaeosphaeria nodorum SN15]
gi|160702333|gb|EAT84100.2| hypothetical protein SNOG_08932 [Phaeosphaeria nodorum SN15]
Length = 204
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 22/220 (10%)
Query: 32 LKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91
+K++L VF+ +G IL+I+A +LK KGQA++VF SA A+E+M GF Y K +++
Sbjct: 1 MKEALTKVFQYYGPILDIIAKSSLKRKGQAFVVFDSEKSALEAIEEMSGFELYGKALKVS 60
Query: 92 YAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPL 150
AKT SD + + +RKR +K KR ++ QA NPA
Sbjct: 61 KAKTHSDETVKRKAAEMFEEHKRKRLMQKDFKRAEEDAKAQA----NPAVT--------- 107
Query: 151 SQIPYPGGAKS---VIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
P AKS V+P+ PN +LF+QN+P D L F +F GFKEVR+V +
Sbjct: 108 --TEKPRAAKSGAAVVPDEYVRPNKVLFLQNIPRDIDEEDLTNVFDRFEGFKEVRLVSVR 165
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
+AF E+ +E A A ++ + IG + + +TY ++
Sbjct: 166 -AVAFAEFENEQFAITAKEATANTPIGAEGKPMKVTYQRQ 204
>gi|448119242|ref|XP_004203684.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
gi|359384552|emb|CCE78087.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
Length = 218
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 122/232 (52%), Gaps = 23/232 (9%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+ NLN+++ +++LK +L F+ +G IL++ A K LK KGQA++ F+ S+ AVE
Sbjct: 7 TVYVRNLNDRISLNKLKPALEEKFQAYGRILQLTAHKNLKMKGQAFITFESSESSKRAVE 66
Query: 77 KMQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
+ + + KPM++ +AK+ SD + + P + RKRH K + +
Sbjct: 67 EAKNIVLFGKPMQVTFAKSNSDNFYLQVEQNEGPVQERKRH-------KAELSEKETASN 119
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQF 195
P + +T K++ PPN IL +QN+ +DTT L +F +
Sbjct: 120 TKPTKVASKASTKDFQ------SWKNI------PPNKILLLQNLKNDTTSQELNEYFDAY 167
Query: 196 PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQS--LQSLKIGQQQLLITYAKK 245
GF +R+V+ + + FVE+ +E +T +++ + LK +++TYAKK
Sbjct: 168 DGFINLRLVKIR-NLCFVEFENESASTKCLETGDYERLKSFGDNIILTYAKK 218
>gi|294655401|ref|XP_457541.2| DEHA2B13684p [Debaryomyces hansenii CBS767]
gi|199429929|emb|CAG85550.2| DEHA2B13684p [Debaryomyces hansenii CBS767]
Length = 252
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
N+ T+Y+NNLN+KV +++LK L +VF+++G I++I A K LK KGQA++ F++
Sbjct: 38 NDAESTETVYVNNLNDKVSVNKLKGELESVFQKYGKIIQITAHKNLKMKGQAFVTFENKT 97
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
++ AA+ +Q + KPM ++YA++ SD + + EE + RK
Sbjct: 98 ASEAAIHGLQEHELFGKPMHVEYARSNSDNYYR---------DILKDEEAIEIRK----- 143
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
Q M N AG A I PPN IL +QN+ + T L
Sbjct: 144 -QLKMKANEQAAG--DAKGVKKSGVKKAQTWKAI-----PPNKILLIQNLKPEITNGDLL 195
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAKK 245
FF + GF R+V+ + ++F+E+ +EM AT ++ L K+ Q L+TYAKK
Sbjct: 196 EFFEAYGGFINSRLVKVR-NLSFIEFENEMSATNCLEDLTKEKLEQFGTDALVTYAKK 252
>gi|84995232|ref|XP_952338.1| U1/2 small nuclear ribonucleoprotein [Theileria annulata strain
Ankara]
gi|65302499|emb|CAI74606.1| U1/2 small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 206
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 37/229 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I P T+Y+ NL++++ ID LK+ ++ +F +G I++I+A KT +GQA+++F +++S
Sbjct: 9 DILPCQTLYVYNLDDQIHIDVLKKLVYELFVPYGIIVDIVARKTKTLRGQAFVIFSEISS 68
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
ATAA++ + G +K ++I+YAK +S K K D + +
Sbjct: 69 ATAALKGLNGRKILNKVLKIEYAKNRS--------------------YKTLKPSDYYKMS 108
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+A G P+S P + + ++ LFVQN+PHD + +L++
Sbjct: 109 KANRG----------KFKPISDFP------DELRSSGTDESHSLFVQNIPHDMSRESLEL 152
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239
F Q+PGF+ R +E + +AFV+Y QA +A++ L ++ L
Sbjct: 153 LFKQYPGFRGCRFIEGR-FVAFVDYSMASQAEIALEGLNGFRVSHTHAL 200
>gi|340501297|gb|EGR28098.1| spliceosomal protein, putative [Ichthyophthirius multifiliis]
Length = 183
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 13/188 (6%)
Query: 41 KQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDII 100
+QFG ILEI+ K +GQAW+VFKD+ +AT A + + GF FY K ++I ++K++S+I+
Sbjct: 1 QQFGEILEIVIKKKNTLRGQAWIVFKDITAATNAKKMLHGFLFYGKDLKINFSKSRSEIL 60
Query: 101 AKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAK 160
K +G +VP+++ KR+ DQ NQA N Q +
Sbjct: 61 DKLEGKWVPKKKLKRNS-----ILDQKIENQAQKHENQQQQQQQQQQQLQQQ------IQ 109
Query: 161 SVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQ 220
+ E PNN+L V+ +P + L FSQ+PGFKEVR++ A+ + F+E+ +E Q
Sbjct: 110 QAVTELN-EPNNVLMVEYLPSFISSEILMSLFSQYPGFKEVRLISARR-VGFIEFENEDQ 167
Query: 221 ATVAMQSL 228
ATVA+
Sbjct: 168 ATVALHGF 175
>gi|119568196|gb|EAW47811.1| hCG22524, isoform CRA_b [Homo sapiens]
Length = 174
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 113/236 (47%), Gaps = 64/236 (27%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+ L+A+F QFG +++ +A KT+K +G+A ++ A
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRCLYALFSQFGHVVDFVALKTMKMRGRALSYLRNWAH 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
P+ R H KD H
Sbjct: 62 --------------------------------------PQMLRDSH-------KDFH--- 73
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
MG P A G + P Q+ PPN ILF+ N+P +T M L M
Sbjct: 74 --FMG-TPNSASTQGNSTPNPQV------------LDYPPNYILFLNNLPEETNEMMLSM 118
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEV +V + IAFVE+ ++ +A A +LQ KI + ITYAKK
Sbjct: 119 LFNQFPGFKEVCLVPGRHDIAFVEFENDGKAGAARDALQGFKITTSHAMKITYAKK 174
>gi|409050372|gb|EKM59849.1| hypothetical protein PHACADRAFT_181793 [Phanerochaete carnosa
HHB-10118-sp]
Length = 258
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 117/244 (47%), Gaps = 22/244 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+YI NLN+KV ++LK LHA+F +G +++++A KT K +GQA++VF D+A ATA
Sbjct: 6 PQATLYIKNLNDKVNKEELKHQLHALFTTYGRVIDVVALKTQKMRGQAFVVFGDLAGATA 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP------RERRKR-------HEEK 119
A+ +G FYDKPM I+YAK KS + K D FVP RE R E++
Sbjct: 66 ALRACEGLDFYDKPMHIEYAKQKSYATMKKDDPNFVPPASIHARETATRLGNGILSGEKR 125
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV 179
G+ K D ++ G + S +P P+ L N+
Sbjct: 126 GRDDKMDEDVRESKRERVDEDDGEEMEIEDDEETGTKDKTSSAVPPVLQQPSAKLLCTNL 185
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEA--------KPGIAFVEYGDEMQATVAMQSLQSL 231
P + T L + F Q+ GF +V + K +A V + A+VA ++L
Sbjct: 186 PIEVTDDVLSVLFQQYQGFMSTNVVPSPTPNASGQKCKMAQVLFDSPGMASVAKEALNGF 245
Query: 232 KIGQ 235
+ Q
Sbjct: 246 ALKQ 249
>gi|451998492|gb|EMD90956.1| hypothetical protein COCHEDRAFT_1137201 [Cochliobolus
heterostrophus C5]
Length = 178
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 89/138 (64%), Gaps = 11/138 (7%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
VA++G PN T+Y+ NL +K++ D LK+SL+ +F +G ILEI+A KT+K +GQA +V
Sbjct: 12 VASEG---IPNRTLYVRNLPDKLQKDDLKRSLYMLFATYGVILEIVALKTMKMRGQAHVV 68
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF-VPRERRKRHEEKGKKR 123
F+DV ++T A+ +QGF F+ K M+I YAKTKSD +AK DGT+ +P R E+
Sbjct: 69 FRDVDASTQAMRALQGFTFFGKDMQIAYAKTKSDTVAKLDGTYKMPEPERADDEQ----- 123
Query: 124 KDQHDANQAGMGLNPAYA 141
Q A +G G P A
Sbjct: 124 --QAPAQTSGFGAAPEKA 139
>gi|390601524|gb|EIN10918.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 247
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 23/204 (11%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+NNLN+KV ++L+ L+A+F +G +++++A KT K +GQA+LVF ++A AT+
Sbjct: 4 PNTTLYVNNLNDKVNKEELRAQLYALFTTYGKVIDVIASKTPKMRGQAFLVFSELAGATS 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP-------------RERRKRHEEK 119
A+ +G FYDKP+RIQYAKTKS + K D FVP E+R R ++
Sbjct: 64 ALRACEGMVFYDKPLRIQYAKTKSYATLKKEDPNFVPPNPAHAPQGVFSASEKRGREDDS 123
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV 179
R + + G PP + ++ P+ L N+
Sbjct: 124 ENIRPVKKEKQDDGSDDEEMEIEDDDDAPP---------KQQHQQQSEVQPSARLMASNL 174
Query: 180 PHDTTPMALQMFFSQFPGFKEVRM 203
P + T L + F Q+ GF V++
Sbjct: 175 PQEVTEDMLSVLFQQYQGFLSVQV 198
>gi|259016057|gb|ACV89310.1| sans fille [Hydropsyche phalerata]
Length = 102
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 82/153 (53%), Gaps = 51/153 (33%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE 118
GQA+++FK+++SAT A+ MQGFPFYDKPMRIQY KT SD+IAK GTF +ER KR +E
Sbjct: 1 GQAFVIFKEISSATVALRNMQGFPFYDKPMRIQYCKTDSDVIAKMKGTF--QERPKRIKE 58
Query: 119 KGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQN 178
+ PPN ILF+ N
Sbjct: 59 Q-------------------------------------------------PPNQILFLTN 69
Query: 179 VPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
+P +T+ M L M F+QFPGFKEVR+V + IA
Sbjct: 70 LPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 102
>gi|71030602|ref|XP_764943.1| U2 small nuclear ribonucleoprotein B [Theileria parva strain
Muguga]
gi|68351899|gb|EAN32660.1| U2 small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 206
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 37/229 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I P T+Y+ NLN+++ ++ LK+ L+ +F +G I++I+A +T +GQA++VF +++S
Sbjct: 9 DILPCQTLYVYNLNDQIHVEVLKKLLYELFVPYGIIVDIVARRTKTLRGQAFVVFSEISS 68
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
ATAA++ + G +K ++I+YAK +S T P + K K + K +H
Sbjct: 69 ATAALKGLNGRKVLNKVLKIEYAKNRS------YKTLKPSDYYKM--SKANRAKLKH--- 117
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+S +P S+ E+ A LFVQN+PHD + +L++
Sbjct: 118 -------------------VSDLP-EDLRSSLTDESHA-----LFVQNIPHDMSKESLEL 152
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239
F Q+PGF+ R +E + +AFV+Y QA +A++ L ++ L
Sbjct: 153 LFKQYPGFRGCRFIEGR-FVAFVDYSMASQAEIALEGLNGFRVSHTHAL 200
>gi|451848678|gb|EMD61983.1| hypothetical protein COCSADRAFT_192065 [Cochliobolus sativus
ND90Pr]
Length = 178
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 89/138 (64%), Gaps = 11/138 (7%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
VA++G PN T+Y+ NL +K++ D LK+SL+ +F +G IL+I+A KT+K +GQA +V
Sbjct: 12 VASEG---IPNRTLYVRNLPDKLQKDDLKRSLYMLFATYGVILDIVALKTMKMRGQAHVV 68
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF-VPRERRKRHEEKGKKR 123
F+D+ S+T A+ +QGF F+ K M+I YAKTKSD +AK DGT+ +P R ++
Sbjct: 69 FRDIDSSTQAMRALQGFTFFGKDMQIAYAKTKSDTVAKLDGTYKMPEPERAEDDQ----- 123
Query: 124 KDQHDANQAGMGLNPAYA 141
Q A +G G P A
Sbjct: 124 --QAPAQTSGFGAAPEKA 139
>gi|395330403|gb|EJF62786.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 270
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 120/255 (47%), Gaps = 36/255 (14%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+ NLN+KVK D+L+ L A+F +G IL+++A K K KGQA++VF D+A ATA
Sbjct: 6 PNTTLYLKNLNDKVKKDELRAQLFALFTTYGRILDVVALKGPKMKGQAFVVFTDLAGATA 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP----------------------R 110
A+ +G FYDKPM I+YAKTKS + + D FVP R
Sbjct: 66 ALRGCEGMVFYDKPMHIEYAKTKSYATLRREDPDFVPPTSIYVKNAPNGKLANGGAGEKR 125
Query: 111 ERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSV----IPEA 166
R R +E ++ K + + P Q G++ IP A
Sbjct: 126 TRDDRMDEDAREVKRERTDKDDEDDDDEEMEIEDDDEGP-RQGGSTNGSRQCDAGQIPAA 184
Query: 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA--------KPGIAFVEYGDE 218
+ L N+P + T L + F Q+ GF V++V + + +A+V +
Sbjct: 185 TQQQSARLMCLNLPQEVTDDVLSVLFQQYQGFHSVQVVPSPTPNAAGQRVKMAYVMFDSP 244
Query: 219 MQATVAMQSLQSLKI 233
A+VA ++L +
Sbjct: 245 DLASVAKEALDGFTL 259
>gi|412990465|emb|CCO19783.1| U1 small nuclear ribonucleoprotein A [Bathycoccus prasinos]
Length = 240
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 113/242 (46%), Gaps = 23/242 (9%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N T+YI+NLNE V +++L+++L AVF QFG + I A + K +GQAW+VF + SA A
Sbjct: 7 NTTLYISNLNETVAVNELRKALLAVFSQFGRVSNIFASRRYKLRGQAWIVFGNSQSADNA 66
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQ--HDANQA 132
+ +QG PFY KPM I A K + + +P +K +Q H + +
Sbjct: 67 LHVLQGLPFYSKPMNIAVALKFPSASMKINSSELP-----------QKSSEQCIHSSGIS 115
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQ---------NVPHDT 183
M + G + + KS I P IL + T
Sbjct: 116 SMRRSGEDVGIDQEKKGEDREEHKNKLKSAILSVKGLPGFILNFNFELLGFTFLFITEAT 175
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITY 242
T L + F QFPGF+ VR KPG+A V++ +AT A+ LQ ++ + I Y
Sbjct: 176 TDQMLSLLFKQFPGFQRVRTDSEKPGLASVQFRCAAEATTALSGLQGFRLNATHTMEIEY 235
Query: 243 AK 244
AK
Sbjct: 236 AK 237
>gi|449549875|gb|EMD40840.1| hypothetical protein CERSUDRAFT_103222 [Ceriporiopsis subvermispora
B]
Length = 258
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YI NLN+KV ++L+ L+A+F +G I+ I+A KT K +GQA+LVF D+ASATA
Sbjct: 6 PNETLYIKNLNDKVNKEELRTQLYALFTTYGKIINIVAMKTEKMRGQAFLVFSDLASATA 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP------------RERRKRHEEKG 120
A+ +G FYDKPM I+YA+T+S + + D FVP R +
Sbjct: 66 ALRACEGIVFYDKPMHIEYARTRSYATLQREDPNFVPPTSVHAQHTSGLNGRSANGTAEK 125
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS-VIPEAPAPPNNILFVQNV 179
+ R+D+ D + G A A + V+P + L N+
Sbjct: 126 RPREDRMDEDVPGSKREKVDADEEEMEIEDDDEAARQNASAGVVPTTVQHISARLLCTNL 185
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMV 204
P + T L + F Q+ GF+ +V
Sbjct: 186 PQEVTDDVLSVLFQQYQGFQSTHVV 210
>gi|389744433|gb|EIM85616.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 280
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 30/229 (13%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
+A+ PN T+Y+NNLN++++ ++L+ L A+F +G +++++A KT K +GQA+LV
Sbjct: 1 MASSSTVTQPNTTLYLNNLNDQIQKEELRGQLFALFTTYGKVIDVVATKTQKMRGQAFLV 60
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP-------------- 109
F D+A+AT+A+ G FYDKP+R+QYAKTKS + + D FVP
Sbjct: 61 FTDLAAATSALRATDGMLFYDKPLRVQYAKTKSYATMRREDPNFVPPTAAHGRPLTDSQV 120
Query: 110 ------------RERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQI---P 154
R R E G+ +K + A + P +Q
Sbjct: 121 KPIGGAGSSVQKRTREDEDMEDGRAQKQKKAAAAEEESDDEEMEIDDDEDGPPAQQGGEQ 180
Query: 155 YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRM 203
GA + IP+ + L N+P + T L + F Q+ GF+ ++
Sbjct: 181 AATGAATTIPQTAGRSSARLLCTNLPGEVTDSVLSVLFQQYQGFQSTQV 229
>gi|351707543|gb|EHB10462.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 242
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 103/195 (52%), Gaps = 23/195 (11%)
Query: 40 FKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDI 99
K+FG IL+IL ++L + QA+ V++AT + MQ FPFYDKPM IQYAKT SDI
Sbjct: 9 LKKFGQILDILVSRSLMMRNQAF-----VSNATNVLCSMQEFPFYDKPMCIQYAKTNSDI 63
Query: 100 IAKADGTFVPRE-----RRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPP---LS 151
I K GTFV + R+ +++EK R+ G+ P G PP S
Sbjct: 64 IVKMKGTFVEWDHKWEKRKPKNQEKLLPRRLWRLPYMLPPGMIPPPGLTPGQIPPGAMPS 123
Query: 152 QIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG-- 209
Q PG P PPN+ILF+ P +T + + F+QFPGFK+V + KPG
Sbjct: 124 QQLMPGQMAPAQPLWDNPPNHILFLTKQPEETNELMSSLLFNQFPGFKKVCL---KPGRD 180
Query: 210 -----IAFVEYGDEM 219
I FVE+ +E+
Sbjct: 181 NITLYITFVEFNNEV 195
>gi|323508363|emb|CBQ68234.1| related to small nuclear ribonucleoprotein snRNP U1A [Sporisorium
reilianum SRZ2]
Length = 291
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 33/249 (13%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+ NLNEKVK++ +K +L +F +GT+L + + L+ +GQA++ +V +A A
Sbjct: 54 TLYVQNLNEKVKLETMKATLANLFSNYGTVLSVTSHTNLRMRGQAFVALDNVQAADKARR 113
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIA----------KADGTFVPRERRKRHEEKGKK---- 122
+ FP Y K M+I +AK+KSD + ++D +E+R H++ ++
Sbjct: 114 EAHLFPLYGKAMKISFAKSKSDAVVLQEHKQQGGEESDEFKQHKEQRLEHKKMARRGNVL 173
Query: 123 ------RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFV 176
+K + AG P A A P +P+ PPN +LF+
Sbjct: 174 RRRELEKKIRAKRAAAGEIAEPEKAAATKRAP------------QEMPDEYLPPNKMLFL 221
Query: 177 QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ- 235
QN+P L+ FS + G+ +V+ + K IAFVE+ D + A +L G
Sbjct: 222 QNIPEGVGKGELESLFSAYSGYVDVQTIPGKADIAFVEFSDIPSSATARGALNGYNFGAG 281
Query: 236 QQLLITYAK 244
+L IT+A+
Sbjct: 282 DKLKITFAR 290
>gi|302696767|ref|XP_003038062.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
gi|300111759|gb|EFJ03160.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
Length = 261
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 120/243 (49%), Gaps = 25/243 (10%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YI NLN+KV+ D+L+ L+A+F +G I++++ K + +GQAWLVF D+ASAT
Sbjct: 10 PNTTLYIKNLNDKVQKDELRHQLYALFTTYGRIIDMVVSKAPRMRGQAWLVFADLASATT 69
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP--------------RERRKRHEE 118
A+ QG FYDKPM I YAK+KS + + D FVP +R R E+
Sbjct: 70 ALRACQGMVFYDKPMHIDYAKSKSFATLKREDPNFVPPTAVHASPFVNGKDPNKRARDED 129
Query: 119 KGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQN 178
R+ + + +A + P Q P P S +P ++ L N
Sbjct: 130 TADTRQAKRE--KADESSDEEMEIDDEDEQPTQQAPPPPLTSSAVPTIVHQASSRLLCTN 187
Query: 179 VPHDTTPMALQMFFSQFPGFKEVRMVEA-KPG-------IAFVEYGDEMQATVAMQSLQS 230
+P + T L + F Q+ G ++V++ PG +A V Y +VA ++L
Sbjct: 188 LPQEVTEDVLSVLFQQYRGLISTQVVQSPTPGPDGSKAKMAQVLYESAALGSVAKEALDG 247
Query: 231 LKI 233
++
Sbjct: 248 FQL 250
>gi|145533136|ref|XP_001452318.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420006|emb|CAK84921.1| unnamed protein product [Paramecium tetraurelia]
Length = 275
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 127/246 (51%), Gaps = 30/246 (12%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YIN LNEKV ++++Q+L+A+F Q G +L+I+ K + +GQA+++ +D SA
Sbjct: 46 PNKTLYINRLNEKVTAEEMRQTLYALFSQSGKVLDIIVKKNILMRGQAFILMEDEESAIQ 105
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF---VP-----RERRKRHEEKGKK--- 122
A K YDK M++ +AK KS I+K D +P +E +KR ++K ++
Sbjct: 106 AQIKFHNTQLYDKVMKVNFAKEKSYYISKGDNEEKEKLPMSDKIKEHKKRIQDKRQREMF 165
Query: 123 -RKDQHDANQAGMGL--NPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV 179
+K Q +A M L N Y GA + + + Y S + +
Sbjct: 166 NQKQQREAPTISMPLTVNQVYTGA---SSKIKVLLYNQFFDSKLTKQRL----------- 211
Query: 180 PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239
H + L+ F F GF+E R ++ K G+AFVE+ DE+QAT + L + + L
Sbjct: 212 -HLVDFVNLEQHFRNFFGFREFRGIKPK-GVAFVEFEDELQATHCLNELNGTQFEEVTLQ 269
Query: 240 ITYAKK 245
I+Y KK
Sbjct: 270 ISYQKK 275
>gi|259016063|gb|ACV89313.1| sans fille [Blattella germanica]
Length = 105
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 82/156 (52%), Gaps = 51/156 (32%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA++ FK++ S++ A+ MQGFPFYDKPMRIQYAK SDIIAK GT+
Sbjct: 1 KMRGQAFVCFKEIQSSSTALRSMQGFPFYDKPMRIQYAKVDSDIIAKMKGTY-------- 52
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+++ KK KDQ PPN ILF
Sbjct: 53 -QQRPKKMKDQ------------------------------------------PPNQILF 69
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
+ N+P +T+ M L M F+QFPGFKEVR+V + IA
Sbjct: 70 LTNLPEETSEMMLAMLFNQFPGFKEVRLVPNRHDIA 105
>gi|403221977|dbj|BAM40109.1| U1/2 small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 206
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 125/235 (53%), Gaps = 38/235 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I P T+Y+ NLN++V ID LK+ ++ +F +G I++I+A +T +GQA++VF++++S
Sbjct: 9 DILPCQTLYVYNLNDQVHIDVLKKLVYELFIPYGIIVDIVARRTKNLRGQAFVVFREISS 68
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
ATAA++ + G +K ++I+YAK +S K K D + +
Sbjct: 69 ATAALKGLNGRKVLNKVLKIEYAKNRS--------------------YKAMKPSDYYKIS 108
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
++ + A + ++ G +S + LFV+N+P D + +L++
Sbjct: 109 KSSKSKSKI------APEYMDEVRTDGNEES----------HTLFVENIPSDMSKDSLEL 152
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
F Q+PGFK R +E + +AFV+Y QA +A++ LQ ++ L I+ AK
Sbjct: 153 LFRQYPGFKNCRFIEGRY-VAFVDYSMATQAEIALEGLQGFRVSHTHALQISLAK 206
>gi|294911645|ref|XP_002778029.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239886150|gb|EER09824.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 418
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 78/108 (72%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
++ PN T+YINNLN++VK ++LK+S+ + K GT+++ +A ++L+ +GQ ++VF
Sbjct: 137 DDFPPNETLYINNLNDRVKPEELKKSILELCKSCGTVIDCIAMRSLRRRGQVFVVFSSKE 196
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
+++A++K+QG Y K MR+ YAKTKSD IAK +GT+V R++ K E
Sbjct: 197 ESSSAMKKLQGHSLYSKNMRVSYAKTKSDAIAKKEGTYVRRDKEKLKE 244
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
PN LFV+N+P TP L F +PGF+ R++ A+ + F+++ E QAT+A +
Sbjct: 344 PNKTLFVENLPPRCTPEKLTAVFKSYPGFEGTRVI-AERQVGFIDFSSEFQATMAKNARG 402
Query: 230 SLKIGQQQLLITYAKK 245
+ Q + I+YA+K
Sbjct: 403 DYTMEGQLVKISYARK 418
>gi|146420372|ref|XP_001486142.1| hypothetical protein PGUG_01813 [Meyerozyma guilliermondii ATCC
6260]
Length = 220
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 127/239 (53%), Gaps = 31/239 (12%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNEKV ++ L++ L ++F +FG +L+I A K +K KGQA++ F + + AA+E
Sbjct: 3 TLYIRNLNEKVSVNTLRRLLESIFAKFGEVLQITANKNIKMKGQAFVTFANKLQSAAAME 62
Query: 77 KMQGFPFYDKPMRIQYAKTKSD---IIAKADGTFVPR---ERRKRHEEKGKKRKDQHDAN 130
K+Q + + KP+ I YAK SD I K D V + E+ KR KRK Q+D
Sbjct: 63 KLQLYELFQKPIEISYAKKNSDQYFIAVKKDTETVEKRKNEKAKRELTLANKRKVQND-- 120
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE-APAPPNNILFVQNVPHDTTPMALQ 189
P +A A P P K I + PPNN+L +QN D + LQ
Sbjct: 121 ------EPDFAAA----------PEPIKKKIKIEDWKLLPPNNVLLLQNTTVDLNDV-LQ 163
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS---LKIGQQQLLITYAKK 245
FF FPGF R V+A ++F+E+ E +T +Q LK+G + +L TYAKK
Sbjct: 164 AFFGSFPGFINTRFVKA-LNLSFIEFESEELSTKCLQGTTKEDILKLGPEAVL-TYAKK 220
>gi|389586007|dbj|GAB68736.1| U1A small nuclear ribonucleoprotein [Plasmodium cynomolgi strain B]
Length = 376
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 72/101 (71%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+Y+ NLN+++KID++K+SL +FKQ+G I +++ K+ KGQAW+V+ V S+
Sbjct: 202 IPPNETLYVKNLNDRIKIDEMKKSLKDLFKQYGVIEDLVVMKSFWRKGQAWVVYDTVESS 261
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
T A+ +QGF + K M+I Y+ KSD+ +K DGTFV R +
Sbjct: 262 TKALNALQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSK 302
>gi|399218844|emb|CCF75731.1| unnamed protein product [Babesia microti strain RI]
Length = 199
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 44/223 (19%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y NNLN+ + I +L L+ +F +G +++I+A + +GQA++VFK++AS
Sbjct: 8 DIPPNQTLYANNLNDNINIKELTHLLYELFVPYGEVIDIVAQRGNAKRGQAFIVFKEIAS 67
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ +QG K + + YAKTKS+ G F K K + D
Sbjct: 68 ATNALRSLQGRVILGKKLNLNYAKTKSNATLIQMGAF-------------KLNKPKADVI 114
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q + +AP + I FV+N+P DTT A+++
Sbjct: 115 Q-----------------------------DIKVDAPQDVHTI-FVENLPPDTTQRAVEI 144
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
FSQ+PG+ R + + G+AFV+Y +QA V +Q LQ +I
Sbjct: 145 LFSQYPGYVGCRFILDR-GVAFVDYEKSVQAEVTIQGLQGFRI 186
>gi|345802821|ref|XP_003434975.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Canis
lupus familiaris]
Length = 88
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 72/85 (84%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+ +F QF +++I+A KT+K + QA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYTLFSQFVHVVDIVALKTMKMREQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKT 95
+T A+ ++QGFPFY KPMRIQYAKT
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKT 86
>gi|294942132|ref|XP_002783392.1| U1 snRNP protein, putative [Perkinsus marinus ATCC 50983]
gi|239895847|gb|EER15188.1| U1 snRNP protein, putative [Perkinsus marinus ATCC 50983]
Length = 325
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 78/108 (72%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
++ PN T+YINNLN++VK ++LK+S+ + K GT+++ +A ++L+ +GQ ++VF
Sbjct: 44 DDFPPNETLYINNLNDRVKPEELKKSILELCKSCGTVIDCIAMRSLRRRGQVFVVFSSKE 103
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
+++A++K+QG Y K MR+ YAKTKSD IAK +GT+V R++ K E
Sbjct: 104 ESSSAMKKLQGHSLYSKNMRVSYAKTKSDAIAKKEGTYVRRDKEKLKE 151
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
PN LFV+N+P TP L F +PGF+ R++ A+ + F+++ E QAT+A +
Sbjct: 251 PNKTLFVENLPPRCTPEKLTAVFKSYPGFEGTRVI-AERQVGFIDFSSEFQATMAKNARG 309
Query: 230 SLKIGQQQLLITYAKK 245
+ Q + I+YA+K
Sbjct: 310 DYTMEGQLVKISYARK 325
>gi|299747568|ref|XP_001837125.2| U1 small nuclear ribonucleoprotein A [Coprinopsis cinerea
okayama7#130]
gi|298407578|gb|EAU84742.2| U1 small nuclear ribonucleoprotein A [Coprinopsis cinerea
okayama7#130]
Length = 218
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 81/127 (63%), Gaps = 12/127 (9%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YINNLNEK+ ++LK L+A+F +G I++I+A K K +GQA+LVF D+A AT
Sbjct: 6 PNPTLYINNLNEKITKEELKTQLYALFTTYGRIIDIVASKGPKMRGQAFLVFADLAGATT 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP-----------RERRKRHEEKGK 121
A+ +G FYDKPMRI YAKTKS +++ D FVP +R R E+K
Sbjct: 66 AMRACEGMLFYDKPMRITYAKTKSYATLSREDPNFVPPNAANASSLIQNGKRTRDEDKSD 125
Query: 122 KRKDQHD 128
+R+ + +
Sbjct: 126 ERQAKRE 132
>gi|294868584|ref|XP_002765593.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239865672|gb|EEQ98310.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 400
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 78/108 (72%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
++ PN T+YINNLN++VK ++LK+S+ + K GT+++ +A ++L+ +GQ ++VF
Sbjct: 122 DDFPPNETLYINNLNDRVKPEELKKSILELCKPCGTVIDCIAMRSLRRRGQVFVVFSSKK 181
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
+++A++K+QG Y K MR+ YAKTKSD IAK +GT+V R++ K E
Sbjct: 182 ESSSAMKKLQGHSLYSKNMRVSYAKTKSDAIAKKEGTYVRRDKEKLRE 229
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
PN LFV+N+P TP L F +PGF+ R++ A+ + F+++ E QAT+A +
Sbjct: 326 PNKTLFVENLPPRCTPEKLTAVFKSYPGFEGTRVI-AERQVGFIDFSSEFQATMAKNARG 384
Query: 230 SLKIGQQQLLITYAKK 245
+ Q + I+YA+K
Sbjct: 385 DYTMEGQLVKISYARK 400
>gi|156102613|ref|XP_001616999.1| U1A small nuclear ribonucleoprotein [Plasmodium vivax Sal-1]
gi|148805873|gb|EDL47272.1| U1A small nuclear ribonucleoprotein, putative [Plasmodium vivax]
Length = 504
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 73/101 (72%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+Y+ NLN+++KID++K++L +FKQ+G I +++ K+ KGQAW+V+ +V S+
Sbjct: 223 IPPNETLYVKNLNDRIKIDEMKKNLKDLFKQYGVIEDLVVMKSFWRKGQAWVVYDNVESS 282
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
T A+ +QGF + K M+I Y+ KSD+ +K DGTFV R +
Sbjct: 283 TKALNALQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSK 323
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQ 226
ILFV+NV + A F +F GF E R++ + +AFV+Y DE AT AM+
Sbjct: 434 ILFVENVVENVNTQAFNDLFKKFSGFIEARIIPQR-NVAFVDYSDEAAATYAMK 486
>gi|167380749|ref|XP_001735437.1| U1 small nuclear ribonucleoprotein A [Entamoeba dispar SAW760]
gi|165902588|gb|EDR28371.1| U1 small nuclear ribonucleoprotein A, putative [Entamoeba dispar
SAW760]
Length = 233
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 17/212 (8%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YINNL++ +K ++++ SL+ VF +G +L++ K+LK +GQA++++ SA A+E
Sbjct: 22 TLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESAQFAME 81
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
+Q +D+PM I Y+K +SDI K G + RE+ K K+ K Q +
Sbjct: 82 SLQNHELFDRPMHINYSKIESDITVKNQGKEITREK------KPKQIKVQIEKTLEHKEE 135
Query: 137 NPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP-PNNILFVQNVPHDTTPMALQMFFSQF 195
P P ++P P +P +N LF+++VP + + L+ F Q
Sbjct: 136 VPIKQDIEKKEPNEIKLP---------PNSPTRHTSNRLFIKSVPQNVSKQRLEELFKQQ 186
Query: 196 PGFKEVRMVEAK-PGIAFVEYGDEMQATVAMQ 226
GF EVR + K +AF+E+ DE + A+Q
Sbjct: 187 EGFVEVRYIVIKGNAVAFIEFKDETSSEHAIQ 218
>gi|50551277|ref|XP_503112.1| YALI0D21450p [Yarrowia lipolytica]
gi|49648980|emb|CAG81306.1| YALI0D21450p [Yarrowia lipolytica CLIB122]
Length = 226
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 23/240 (9%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I+P TIYI N+NEK+KI LK +L + K++G +L+++A L+ +GQA++VF + SA
Sbjct: 4 IAPCETIYIRNINEKIKIPTLKTTLKEICKEYGDVLDVVAHGNLRLRGQAFVVFDSIDSA 63
Query: 72 TAAVEKMQGFP---FYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQH 127
+A+ + + + YAK+ SD +AK KG K D H
Sbjct: 64 ESAISALNSTKVDGLKGSVVEVTYAKSPSDATMAK----------------KGDKELDAH 107
Query: 128 -DANQAGMGLNPAYAGAYGATPPLSQIPYPG-GAKSVIPEAPAPPNNILFVQNVPHDTTP 185
A A L P+ P AK+ P + IL +QN+P +
Sbjct: 108 VRARVAQKELKQLSDSNKRRAEPVRTAETPAKKAKTSTETTYNPVHKILLLQNLPKSASQ 167
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ FS PG+ EVR+V A+ + F E+ E QA VA + Q I ++L+++YAKK
Sbjct: 168 DTVAALFSDLPGYVEVRLVPARQ-VGFAEFETEAQAVVAKEKSQGADIDGEKLIVSYAKK 226
>gi|221060785|ref|XP_002261962.1| U1 small nuclear ribonucleoprotein a [Plasmodium knowlesi strain H]
gi|193811112|emb|CAQ41840.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium knowlesi
strain H]
Length = 499
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 72/101 (71%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN T+Y+ NLN+++KID++K+SL +FKQ+G I +++ K+ KGQAW+V+ V S+
Sbjct: 216 IPPNETLYVKNLNDRIKIDEMKKSLKDLFKQYGVIEDLVVMKSFWRKGQAWVVYDTVESS 275
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
T A+ +QGF + K M+I Y+ KSD+ +K DGTFV R +
Sbjct: 276 TKALNALQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSK 316
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 22/129 (17%)
Query: 98 DIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPG 157
D+IAKA K +EEK KK+ + N M P+ P YP
Sbjct: 373 DLIAKAQA--------KAYEEKNKKKNEDFTKNNNTMYQQPS---------PY----YPM 411
Query: 158 GAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGD 217
A + + ILFV+NV + F +F GF E R++ + +AFV+Y D
Sbjct: 412 NAFAPMQNNIVVACKILFVENVVENVNTEEFNDLFKKFSGFIEARIIPQR-NVAFVDYSD 470
Query: 218 EMQATVAMQ 226
E AT AM+
Sbjct: 471 EAAATNAMK 479
>gi|393241088|gb|EJD48612.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 269
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 33/262 (12%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y++NLN+KVK +L+ L+A+F +G +++++A K+ K +GQA+LVF D+A+AT
Sbjct: 7 PTPTLYVHNLNDKVKTSELRSQLYALFSTYGRVIDVVASKSPKMRGQAFLVFADLAAATT 66
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP-----------RERRKRHEEKGK 121
A+ G FYDKP+RI+Y++TKS + + D FV + EK
Sbjct: 67 AMRACAGMSFYDKPLRIEYSRTKSYATVRQEDPNFVSPSLAKAKKAPAPATKLNGGEKRP 126
Query: 122 KRKDQHDA-NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------PPNNIL 174
+ D+ DA +A G +P A + + A A PP+ L
Sbjct: 127 RDSDEADAQREAKRGKADDGDEDEMEIEEDEDVPAKQPATNGVAAAGAAASMQRPPSATL 186
Query: 175 FVQNVPHDTTPMALQMFFSQFPGFKEVRM-------------VEAKPGIAFVEYGDEMQA 221
N+P + T L + FSQ+ GF+ + + AK +A + Y A
Sbjct: 187 LCTNLPQEITEDMLSVLFSQYQGFQSASVTASQHPAIVNGAQISAKTKMAQIFYDSAELA 246
Query: 222 TVAMQSLQSLKIGQ-QQLLITY 242
+ A ++L + + Q+LI+Y
Sbjct: 247 STAKEALDGFAVKKGWQMLISY 268
>gi|189205583|ref|XP_001939126.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975219|gb|EDU41845.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 182
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+ NL +K++ + LK++L+ +F +G IL+I+A KT+K +GQA +VF+DV S+T
Sbjct: 20 PNRTLYVRNLPDKLQKEDLKRNLYMLFATYGVILDIVALKTMKMRGQAHVVFRDVDSSTQ 79
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF-VPRERRKRHEEKGKKRKDQHDANQA 132
A+ +Q F F+ K M+I YAKTKSD IAK DGT+ +P R+ E Q A
Sbjct: 80 AMRALQAFTFFGKDMQITYAKTKSDTIAKLDGTYKMPEPEREDQPE-------QASAQAI 132
Query: 133 GMGLNPAYA 141
G G+ P A
Sbjct: 133 GFGVAPEKA 141
>gi|396458052|ref|XP_003833639.1| similar to RNA binding domain-containing protein [Leptosphaeria
maculans JN3]
gi|312210187|emb|CBX90274.1| similar to RNA binding domain-containing protein [Leptosphaeria
maculans JN3]
Length = 182
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 5/128 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+ NL +K+ + LK++L+ +F +G +++I+A KT+K +GQA +VF+DV S+T
Sbjct: 21 PNRTLYVRNLPDKLGKEDLKRNLYMLFATYGVVIDIVALKTMKMRGQAHVVFRDVDSSTQ 80
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ +QGF F+ K M+I YAKTKSD I+K DGT+ E K EE + AG
Sbjct: 81 AMRALQGFTFFGKEMQIAYAKTKSDAISKLDGTYKLPEPEKTGEE-----PEDSAGQSAG 135
Query: 134 MGLNPAYA 141
G PA A
Sbjct: 136 FGAAPAKA 143
>gi|441653781|ref|XP_003270568.2| PREDICTED: U1 small nuclear ribonucleoprotein A [Nomascus
leucogenys]
Length = 211
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 109/232 (46%), Gaps = 66/232 (28%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRH 116
+GQA+++FK+ RIQYAKT SDIIAK GTFV R+R R++
Sbjct: 2 RGQAFVIFKE---------------------RIQYAKTDSDIIAKMKGTFVERDRKREKR 40
Query: 117 EEKGKKRKDQHDANQAGMGLNP---AYAGAYGATPPLSQIP------------------- 154
+ K ++ A Q G G P A G PP++Q P
Sbjct: 41 KPKSQETPATKKAVQGG-GAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMI 99
Query: 155 --------------------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQ 194
PG P + PPN+ILF+ N+P +T + L M F+Q
Sbjct: 100 PPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ 159
Query: 195 FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
FPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 160 FPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 211
>gi|344301346|gb|EGW31658.1| hypothetical protein SPAPADRAFT_140622 [Spathaspora passalidarum
NRRL Y-27907]
Length = 215
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 32/236 (13%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P TIYINNLN++V + +LK L ++F +G IL+I A + LK KGQA++ F+ S+T
Sbjct: 8 PLETIYINNLNDRVSLTKLKSELESLFTSYGKILQITAHRNLKMKGQAFITFESKVSSTK 67
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKDQHDANQA 132
A++ +Q ++KPM I YAK SD + E+RK +E+ KRK
Sbjct: 68 AMD-LQNHILFNKPMHITYAKGNSDAYYELHNEVDKIEQRKSEKERQNLKRKS------- 119
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
PA G S+ KS+ PPN +L +Q + D L +F
Sbjct: 120 ----TPA-GGKQKKKKVKSE-----DWKSL------PPNKLLLIQRLDDDE---QLTSYF 160
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ---QLLITYAKK 245
QF GF VR+V+ + +AF+E+ + +T ++S+++ ++ ++ ++++++AKK
Sbjct: 161 EQFEGFSNVRLVKVRK-LAFIEFDNVESSTKCLKSIKTEELQEKFGSEVILSFAKK 215
>gi|68478695|ref|XP_716616.1| hypothetical protein CaO19.7375 [Candida albicans SC5314]
gi|46438288|gb|EAK97621.1| hypothetical protein CaO19.7375 [Candida albicans SC5314]
gi|238880991|gb|EEQ44629.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 204
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 37/236 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP TIY+NNLNEKV I++LK L F G IL+I A KTLK KGQA++ F+D+ SAT
Sbjct: 3 SPRQTIYVNNLNEKVSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSAT 62
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+E + + KPM + YAK+ +D+I+ D Q
Sbjct: 63 KALE-LNKKDLFSKPMNVTYAKSDADVISTDDNI-----------------------AQR 98
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE-APAPPNNILFVQNVPHDTTPMALQMF 191
+ T QI K + E PPN+IL +QN+ L+++
Sbjct: 99 KKLRSKKRKLDKSGTKNDKQI------KKLRDEWKELPPNHILLIQNLEKFDD---LKIY 149
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAKK 245
F +F GF VR+V+ K +AF+E+ E A + + Q +++++AKK
Sbjct: 150 FEKFAGFDNVRLVKVK-NLAFIEFESEDLAKSCLDQTTEDDLKQFGHDVILSFAKK 204
>gi|307102554|gb|EFN50825.1| hypothetical protein CHLNCDRAFT_28661 [Chlorella variabilis]
Length = 219
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 70/90 (77%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+ +PN T+Y++NL EK+K +LKQ L+A+F QFG I++I+A +T K +GQAW+V+ D+ +
Sbjct: 2 DTAPNQTLYVSNLQEKIKKRELKQLLYALFGQFGKIVDIVAMRTDKLRGQAWIVYADITA 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDII 100
ATAA+ MQ FPF+DKP+R+ +AK+ S +
Sbjct: 62 ATAALRGMQDFPFFDKPLRVSFAKSASHAV 91
>gi|440294232|gb|ELP87249.1| U2 small nuclear ribonucleoprotein B'', putative [Entamoeba
invadens IP1]
Length = 251
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 8/232 (3%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YINNL + K +LK L +F FG +L + K +GQA++V+ + +A A
Sbjct: 25 TLYINNLTQAFKPSKLKAHLTKLFSPFGVVLTVQVRKARAMRGQAFVVYNSMDAAEHAFL 84
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
+Q + +PM I YAKT+SD + G + R ++ + E +++ NQ +G
Sbjct: 85 SLQDNSLFGRPMHIAYAKTESDAFVASTGRKISRVKKPKSAELKISAQNESAPNQVNVGT 144
Query: 137 NPAYAGAYGATPPLSQIPYPGGAKS-VIPEAPAP-PNNILFVQNVPHDTTPMALQMFFSQ 194
+ A G L+ P ++ V P+ P N ILF++NVP + L +++
Sbjct: 145 S-AVDGVGKVQRDLTNDTNPQNEQTRVQPKIEKPMINKILFIENVPKNYGKDELIALYTK 203
Query: 195 FPGFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ GF EVR ++ + G+AF+E+ DE + +A+ G+ L++ YAKK
Sbjct: 204 YSGFSEVRYIKVRGSGVAFIEFRDEQSSEIALNETN----GKDGLVLQYAKK 251
>gi|322797045|gb|EFZ19352.1| hypothetical protein SINV_13322 [Solenopsis invicta]
Length = 152
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 95/166 (57%), Gaps = 23/166 (13%)
Query: 89 RIQYAKTKSDIIAKADGTFVPRERRKRH------EE--KGKKRKDQHDANQAGMGLNPAY 140
RIQYAKT SDIIAK GTF R ++ + EE + KKR + + +G
Sbjct: 1 RIQYAKTDSDIIAKMKGTFAERPKKPKRVIPVADEEAKRAKKRAKEQAKHSQQIG----- 55
Query: 141 AGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKE 200
Y A+ P +PG + +PE P PN ILF+ N+P +T+ M L M F+QFPGFKE
Sbjct: 56 ---YHASVPQ----HPGLVNTAVPEQP--PNQILFLTNLPDETSEMMLSMLFNQFPGFKE 106
Query: 201 VRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
VR+V + IAFVE+ +E+Q+ A +LQ KI + I++AKK
Sbjct: 107 VRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 152
>gi|169601282|ref|XP_001794063.1| hypothetical protein SNOG_03502 [Phaeosphaeria nodorum SN15]
gi|111067587|gb|EAT88707.1| hypothetical protein SNOG_03502 [Phaeosphaeria nodorum SN15]
Length = 177
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 71/94 (75%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+ NLN+K+ + LK+SL+ +F +G +L+++A KT K +GQA +VF+D+ ++T
Sbjct: 20 PNRTLYVRNLNDKLPKEDLKRSLYMLFATYGVVLDVVALKTAKMRGQAHVVFRDLDASTQ 79
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M+I YAKTKSD IAK DGT+
Sbjct: 80 AMRALQGFTFFGKDMQIAYAKTKSDTIAKLDGTY 113
>gi|238499763|ref|XP_002381116.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|220692869|gb|EED49215.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
Length = 327
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
N I PN+T+Y+ NL E+VK+DQLK++L +F ++G +++I+A LK KGQA++VF V
Sbjct: 9 NSIPPNSTVYVRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVE 68
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE--RRKRHEEKGK 121
SA+ A++++ GF +DKPM + +AKT+SD +G E +R+R EKG
Sbjct: 69 SASNAIDEINGFELFDKPMVLDFAKTRSDATVLREGGEDELEAHKRRRLAEKGS 122
>gi|403417360|emb|CCM04060.1| predicted protein [Fibroporia radiculosa]
Length = 256
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 12/205 (5%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y++NLN+KV ++L+ L A+F +G +++++A K K +GQA+LVF D+ ATA
Sbjct: 6 PNATLYVHNLNDKVNKEELRSQLFALFTTYGRVIDVVAAKGPKMRGQAFLVFADLTGATA 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP-------RERRKRHEEKGKKRKD 125
A+ +G FYDKPMR++YAKTKS + + D FVP + + ++R D
Sbjct: 66 AMRACEGIVFYDKPMRVEYAKTKSYATLQREDPNFVPPMSVHTKNANAQAASSEKRQRDD 125
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS----VIPEAPAPPNNILFVQNVPH 181
+ D ++ + A + G ++ +P + L N+P
Sbjct: 126 RMDEDERALKRERAADDDDDDEEMEIEDDDDGAKETSTGGAMPAIVQSQSARLLCTNLPQ 185
Query: 182 DTTPMALQMFFSQFPGFKEVRMVEA 206
+ T L + F Q+ GF+ + ++
Sbjct: 186 EVTDDVLAVLFQQYQGFQSTHVAQS 210
>gi|156088599|ref|XP_001611706.1| U2 small nuclear ribonucleoprotein B' [Babesia bovis T2Bo]
gi|154798960|gb|EDO08138.1| U2 small nuclear ribonucleoprotein B', putative [Babesia bovis]
Length = 213
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 49/251 (19%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
M + A + E PN+T+Y++NL++++ ++ L++ L+ +G I++I A +T K +GQ
Sbjct: 1 MASDQAYRTGESLPNHTLYVSNLDDRIHVNDLRKLLYEFLIPYGEIVDISARRTQKLRGQ 60
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG 120
A++ F ++ASA +A + + G F D+P+++ YA+
Sbjct: 61 AFVSFSEIASAISAFKGVNGRSFLDRPLKVAYAR-------------------------- 94
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN------NIL 174
NQ + P A Y +P ++ V+ E N + L
Sbjct: 95 ---------NQGYKSMKP--AECYRLLTSARSLP----SEQVMIEDTLDANSEGGERHTL 139
Query: 175 FVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
FV+N+ D M++++ F Q+PG+K+ R VE K +AFV++ Q VA+Q LQ +
Sbjct: 140 FVENLHPDMNKMSVELLFQQYPGYKDTRFVEGKC-VAFVDFATAYQGEVALQGLQGFSVS 198
Query: 235 QQQLL-ITYAK 244
L I++AK
Sbjct: 199 HSHALRISFAK 209
>gi|154309069|ref|XP_001553869.1| hypothetical protein BC1G_07429 [Botryotinia fuckeliana B05.10]
Length = 157
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 77/131 (58%), Gaps = 8/131 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+NNL E +K L ++L +F ++GTILEI+A LK KGQA++VF+DV SAT
Sbjct: 13 PNATLYVNNLEESIKPAALIEALTELFSEYGTILEIVAKTNLKAKGQAFIVFEDVESATK 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA---- 129
A+E +QGF + K MRI YAKT+SD K +G E KR K D A
Sbjct: 73 AIEDIQGFELFGKEMRIAYAKTRSDASVKREGGHEELEVHKRRRLAEKVSLDALKALENI 132
Query: 130 ----NQAGMGL 136
N AGM L
Sbjct: 133 GAKENTAGMAL 143
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 164 PEAPAPPNNILFVQNVPHDTTPMAL----QMFFSQFPGFKEV---RMVEAKPGIAFVEYG 216
P PPN L+V N+ P AL FS++ E+ ++AK G AF+ +
Sbjct: 7 PSGSPPPNATLYVNNLEESIKPAALIEALTELFSEYGTILEIVAKTNLKAK-GQAFIVFE 65
Query: 217 DEMQATVAMQSLQSLKIGQQQLLITYAK 244
D AT A++ +Q ++ +++ I YAK
Sbjct: 66 DVESATKAIEDIQGFELFGKEMRIAYAK 93
>gi|345567447|gb|EGX50379.1| hypothetical protein AOL_s00076g143 [Arthrobotrys oligospora ATCC
24927]
Length = 195
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 70/98 (71%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
N +PN T+YI+NLN+K+ LK +L+ +F +G +L+++A KT K +GQA + F+D+A
Sbjct: 20 NSAAPNQTLYISNLNDKIHKPDLKIALYTLFSTYGVVLDVIALKTAKMRGQAHVAFRDIA 79
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A++A+ QG + K M+IQYA++KSD IAK DGT+
Sbjct: 80 GASSAMRGCQGMVIFGKEMKIQYARSKSDTIAKLDGTY 117
>gi|429327511|gb|AFZ79271.1| U1/2 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 207
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 36/240 (15%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A Q ++I P+ T+Y+ NL++++ + +L + L+ +F +G I++I+A KT +GQA++VF
Sbjct: 3 AFQPHDIVPSQTLYVTNLDDQIHVRELVKLLYELFCPYGYIIDIVARKTKTLRGQAFIVF 62
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
++ SATAA++ + G K ++I Y+K KS K + GK K
Sbjct: 63 SEITSATAALKGLNGRSILAKKIKIVYSKNKSYKAMKPSDYY----------RIGKISKL 112
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
Q A P +S A EA + ++ LFV+N+P D
Sbjct: 113 Q-------------------AKPVISSTTEDKPA-----EASSKESHTLFVENIPPDINK 148
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAK 244
+++ F+Q+PGFK R +E + +AF+++ QA A+Q LQ ++ L I++AK
Sbjct: 149 DGVELLFNQYPGFKGCRFIEGR-CVAFIDFALVSQAEAALQGLQGFRMSHNHALHISFAK 207
>gi|367052635|ref|XP_003656696.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
gi|347003961|gb|AEO70360.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
Length = 203
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 11 EISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+ PN T+Y+ NL + K++ + L+ +L+ +F +G++L+++A KT+K +GQA +V+KD+
Sbjct: 17 SVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDIQ 76
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+AT A+ + GF F +PM+I YAK+KS+IIAK DGTF
Sbjct: 77 TATQAMRSLDGFEFLGRPMKISYAKSKSNIIAKLDGTF 114
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 166 APAPPNNILFVQNVPH-----DTTPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDE 218
A PPN L+V N+P + AL M FS + +V ++ G A + Y D
Sbjct: 16 ASVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDI 75
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
AT AM+SL + + + I+YAK
Sbjct: 76 QTATQAMRSLDGFEFLGRPMKISYAK 101
>gi|340923892|gb|EGS18795.1| U2 small nuclear ribonucleoprotein B'-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 201
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+Y+ NL + K++ + L+ +L+ +F +G++L+++A KT+K +GQA +V+KD+ +
Sbjct: 18 IPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDIQT 77
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
AT A+ + GF F +PM+I YAK KS IIAK DGTF P K E
Sbjct: 78 ATMAMRALDGFEFLGRPMKISYAKGKSHIIAKLDGTFKPPTAAKEVE 124
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 169 PPNNILFVQNVPH-----DTTPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDEMQA 221
PPN L+V N+P + AL M FS + +V ++ G A + Y D A
Sbjct: 19 PPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDIQTA 78
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
T+AM++L + + + I+YAK
Sbjct: 79 TMAMRALDGFEFLGRPMKISYAK 101
>gi|448522653|ref|XP_003868744.1| U1A component of the U1 snRNP [Candida orthopsilosis Co 90-125]
gi|380353084|emb|CCG25840.1| U1A component of the U1 snRNP [Candida orthopsilosis]
Length = 229
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 25/243 (10%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P T+YINN+N+KV I+++K L + +QF LA KTL+ KGQA++ F+ + A
Sbjct: 3 VEPKQTVYINNINDKVSINKVKSVLTILLQQFRPTNISLA-KTLRLKGQAFVTFETIDDA 61
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
+ A++ + + K + + +AK+ SD + D + R R+ RH+E K++ Q ++ +
Sbjct: 62 SKAIQSLNNQELFSKCINVTFAKSNSDTL--LDKKELKRIRKVRHDEHKIKKQPQTNS-K 118
Query: 132 AGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT--TPMALQ 189
+ + + A T SQ+ PPN IL +QN+ + T A+
Sbjct: 119 SKTKITKSTAAGKNKTKKQSQVDVQSW-------KTLPPNRILLLQNISSSSLITKEAID 171
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL-------KIGQQQLLITY 242
+F + GF+ R V A ++F+E+ +E +AM+ LQS+ K G ++ +Y
Sbjct: 172 EYFRSYAGFEMARFV-ATRHLSFIEFENE---DIAMECLQSVDEDDMRGKFG-DDIVFSY 226
Query: 243 AKK 245
AKK
Sbjct: 227 AKK 229
>gi|429858035|gb|ELA32870.1| RNA binding domain-containing protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 196
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 10 NEISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
++ISPN T+Y+ NL + K++ + L+ L+ +F +G +L+I+A KT+K +GQA + F+D+
Sbjct: 21 SQISPNQTLYVTNLPSAKIQKNDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITFRDI 80
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+AT A+ ++GF F +P+ IQYAK+KSD +AK DGT+
Sbjct: 81 QAATQAMRSLEGFEFLGRPLSIQYAKSKSDFVAKLDGTY 119
>gi|254571559|ref|XP_002492889.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032687|emb|CAY70710.1| Hypothetical protein PAS_chr3_0663 [Komagataella pastoris GS115]
gi|328353098|emb|CCA39496.1| Nucleolysin TIA-1 [Komagataella pastoris CBS 7435]
Length = 211
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 22/230 (9%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+ NLNEKV ++ LK+ L +F +G +L I A K LK KGQA++ + +A AV+
Sbjct: 3 TLYVRNLNEKVSVNTLKKKLDELFSPYGNVLAITAHKNLKMKGQAFVAYAKQENAIDAVQ 62
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGL 136
+QG +DK + IQ A ++SD + K + + + + +K K K+Q + +A
Sbjct: 63 SLQGTMLFDKQLEIQDATSQSDAVLKET---LGKTEFEDYLKKRKVEKEQKNRKRASSDE 119
Query: 137 NPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFP 196
P K + PN +L +Q V + T ++ F +F
Sbjct: 120 EP-----------------KQKTKRIKIVINNEPNKLLLLQKVDPELTSADIKSIFDKFQ 162
Query: 197 GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL-QSLKIGQQQLLITYAKK 245
G KE+ +V+ + +A +E+ +E A + ++L Q+++I + +TYAKK
Sbjct: 163 GLKEINLVKPR-NLALIEFTEESAAVICKEALGQTIQIKNHECYLTYAKK 211
>gi|380494672|emb|CCF32976.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 204
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
ISPN T+Y+ NL + K++ L+ L+ +F +G +L+I+A KT+K +GQA + F+DV +
Sbjct: 23 ISPNQTLYVTNLPSNKIQKQDLRTELYLLFSTYGPVLDIVALKTMKMRGQAHITFRDVQT 82
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ ++GF F +P+ IQYAK+KSD +AK DGT+
Sbjct: 83 ATQAMRSLEGFEFLGRPLTIQYAKSKSDFVAKLDGTY 119
>gi|90086371|dbj|BAE91738.1| unnamed protein product [Macaca fascicularis]
Length = 147
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 87/159 (54%), Gaps = 13/159 (8%)
Query: 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGAT 147
MRIQYAKT SDII+K GTF +E++K ++ + N+ P A G T
Sbjct: 1 MRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTNKKPGQGTPNSANTQGNT 60
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
P Q+P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V +
Sbjct: 61 TPNPQVP------------DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR 108
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 109 HDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 147
>gi|320588577|gb|EFX01045.1| RNA-binding domain containing protein [Grosmannia clavigera kw1407]
Length = 200
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I+PN T+Y+ NL + K+K + L+ +L+ +F +G +L+++A KT+K +GQA +VF+D+ +
Sbjct: 24 IAPNQTLYVRNLPSAKIKKEDLRMALYLLFSTYGPVLDVVALKTMKMRGQAHIVFRDIQA 83
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
AT A + GF F+ + M++ YAK+KS++IA+ DGTF P
Sbjct: 84 ATQAARSLDGFSFFGQDMKVTYAKSKSNVIARLDGTFEP 122
>gi|407921847|gb|EKG14985.1| protein of unknown function DUF2235 [Macrophomina phaseolina MS6]
Length = 198
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 68/94 (72%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y +NL +K+ LK+ L+ +F +G++L+I+ KT+K +GQA +VF+D+ AT
Sbjct: 22 PNQTLYCSNLPDKLPKKNLKRQLYLIFSTYGSVLDIITLKTIKMRGQAHIVFQDIPKATQ 81
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M IQYAK+KS+ +AK DGTF
Sbjct: 82 AMRSLQGFEFFGKKMSIQYAKSKSNYVAKLDGTF 115
>gi|425868370|gb|AFY04317.1| sans fille, partial [Mengenilla sp. BMW-2012]
Length = 130
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 83/144 (57%), Gaps = 21/144 (14%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ASAT A+ MQGFPFYDKPMRI Y+KT SDIIAK GTF R ++ +
Sbjct: 1 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPK 60
Query: 116 H-------EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168
E K K++ + A Q MG P A G T + +PE
Sbjct: 61 RVVPAADEEAKKAKKRAKEQAKQQQMGYTPGAAQHTGLT------------NAAVPE--Q 106
Query: 169 PPNNILFVQNVPHDTTPMALQMFF 192
PPN ILF+ N+P +T+ M L M F
Sbjct: 107 PPNQILFLTNLPDETSEMMLSMLF 130
>gi|259484735|tpe|CBF81211.1| TPA: U1 small nuclear ribonucleoprotein A, putative
(AFU_orthologue; AFUA_6G06490) [Aspergillus nidulans
FGSC A4]
Length = 188
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ +L+ +F +GT+L+I+A KT K +GQA +VFKD+ ++T
Sbjct: 19 PNQTLYCTNLPDKLRKYDLRLALYTLFSTYGTVLDIVAMKTEKMRGQAHVVFKDIQASTQ 78
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
A+ +QGF F+ KPM+I YAK SD+IA+ GT+V
Sbjct: 79 AMRALQGFEFFGKPMKIVYAKGSSDVIARLRGTYV 113
>gi|145543087|ref|XP_001457230.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425045|emb|CAK89833.1| unnamed protein product [Paramecium tetraurelia]
Length = 221
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 124/245 (50%), Gaps = 52/245 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P T+Y++ LN+K+K++ LK L+ +F QFG +L+I+ KT K +GQA++VF+++ AT
Sbjct: 17 APKETLYVSGLNDKIKLEDLKFVLYILFSQFGEVLQIVMKKTQKLRGQAFIVFQNITYAT 76
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH-----------EEKGK 121
A + G YDKP+ I++A KS I + +G F ++++++ E K K
Sbjct: 77 NAKSALSGMMVYDKPLIIEFAYKKSVIFDRMEGKFYYKQKQQKELQPTLPTDLAKERKQK 136
Query: 122 KRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPH 181
K +D+ + N N + +P L Y +NIL +
Sbjct: 137 KLEDKLNNNTV---FNQGENHYHHLSPKLCYRSY--------------LDNILVIH---- 175
Query: 182 DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLI 240
++++ A+ G+AFVEY ++ QATVA++ L + KI + QL +
Sbjct: 176 ------------------LIKVITAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKV 216
Query: 241 TYAKK 245
YAKK
Sbjct: 217 KYAKK 221
>gi|367018898|ref|XP_003658734.1| hypothetical protein MYCTH_2294867 [Myceliophthora thermophila ATCC
42464]
gi|347006001|gb|AEO53489.1| hypothetical protein MYCTH_2294867 [Myceliophthora thermophila ATCC
42464]
Length = 200
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+ PN T+Y+ NL + K++ + L+ +L+ +F +G++L+++A KT+K +GQA +V+KD+ +
Sbjct: 17 VPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDIQT 76
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ + GF F+ + M+I YAK+KS+IIAK DGTF
Sbjct: 77 ATQAMRALNGFEFFGREMKISYAKSKSNIIAKLDGTF 113
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 166 APAPPNNILFVQNVPH-----DTTPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDE 218
A PPN L+V N+P + AL M FS + +V ++ G A + Y D
Sbjct: 15 ASVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDI 74
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
AT AM++L + +++ I+YAK
Sbjct: 75 QTATQAMRALNGFEFFGREMKISYAK 100
>gi|380091235|emb|CCC11092.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 232
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y+ NL E+VK + LK++L +F ++G +++I+A LK KGQA++VF SA A
Sbjct: 8 PIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 67
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSD--IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
A+E++QGF ++KPM + AKT+SD +I + + +R+R EK KKR + A Q
Sbjct: 68 AIEELQGFELFEKPMLVALAKTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEV-AEQ 126
Query: 132 AGMGLNPAYAGAYGATPPLSQ----IPYPG-GAKSVIPEAPAPPNNILFVQNVP 180
P A A P +Q + G G +V+P+ PPN IL + P
Sbjct: 127 QNRLKRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPDEYLPPNRILSFRTCP 180
>gi|406862452|gb|EKD15502.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 211
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Query: 13 SPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+PN ++Y+ NL + K++ L+ SL+ +F +G +L+++A KT+K +GQA +V++DV +A
Sbjct: 26 APNQSLYVTNLPSSKIQKSDLRISLYMLFSTYGPVLDVVALKTMKMRGQAHVVYRDVQTA 85
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
T A+ +QGF + + M+IQYAK+KSD+IAK DGTF
Sbjct: 86 TQAMRALQGFELFGRQMQIQYAKSKSDVIAKLDGTF 121
>gi|296422964|ref|XP_002841027.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637257|emb|CAZ85218.1| unnamed protein product [Tuber melanosporum]
Length = 142
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 67/96 (69%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ PN T+Y+ NLN+KV+ L+ L+ +F +G +L++ A KT+K +GQA + F+DVA+A
Sbjct: 15 LPPNQTLYVQNLNDKVRKQDLRTELYTLFSTYGVVLDVNALKTMKGRGQAHIAFRDVAAA 74
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
T A+ +QGF F+ K MRI Y K KS ++K DGT+
Sbjct: 75 TQAMRALQGFEFFGKEMRIFYGKGKSHAVSKLDGTY 110
>gi|347829902|emb|CCD45599.1| hypothetical protein [Botryotinia fuckeliana]
Length = 201
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 14 PNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
PN TIYI NL + K++ D L++ L+ + +G +L+++A K++K +GQA +V++D+ +AT
Sbjct: 16 PNQTIYITNLPSSKIQKDDLRRELYTLCSTYGPVLDVIALKSMKMRGQAHVVYRDIQTAT 75
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F + M IQYAK+KSD IAK DGTF
Sbjct: 76 QAMRALQGFEFLGREMNIQYAKSKSDTIAKLDGTF 110
>gi|320032581|gb|EFW14533.1| hypothetical protein CPSG_08791 [Coccidioides posadasii str.
Silveira]
Length = 182
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 69/97 (71%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ +L+ +F +GT+L+++A KT K +GQA +VF+D+ ++T
Sbjct: 13 PNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDIQTSTQ 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
A+ +QGF F+ K MRI YAK SDIIAK GT+ P+
Sbjct: 73 AMRALQGFNFFGKEMRIVYAKGNSDIIAKLRGTYAPQ 109
>gi|116181854|ref|XP_001220776.1| hypothetical protein CHGG_01555 [Chaetomium globosum CBS 148.51]
gi|88185852|gb|EAQ93320.1| hypothetical protein CHGG_01555 [Chaetomium globosum CBS 148.51]
Length = 196
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Query: 3 PEVANQGNEISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P++ + + PN T+Y+ NL + K++ + L+ +L+ +F +G +L+++A KT+K +GQA
Sbjct: 8 PDLPAKVASVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGAVLDVVALKTMKMRGQA 67
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+V+KD+ +AT A+ + GF F+ + M+I YAK+KS++IAK DGTF
Sbjct: 68 HIVYKDIQTATQAMRSLDGFEFFGQEMKISYAKSKSNVIAKLDGTF 113
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 166 APAPPNNILFVQNVPH-----DTTPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDE 218
A PPN L+V N+P + AL M FS + +V ++ G A + Y D
Sbjct: 15 ASVPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGAVLDVVALKTMKMRGQAHIVYKDI 74
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
AT AM+SL + Q++ I+YAK
Sbjct: 75 QTATQAMRSLDGFEFFGQEMKISYAK 100
>gi|425868372|gb|AFY04318.1| sans fille, partial [Anopheles gambiae]
Length = 116
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 77/141 (54%), Gaps = 29/141 (20%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK+++SAT A+ MQGFPFYDKPMRI+Y+KT SD+IAK GTF R +R +
Sbjct: 1 KMRGQAFIIFKEISSATNAMRTMQGFPFYDKPMRIKYSKTDSDMIAKLKGTFQERPKRVK 60
Query: 116 H----EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171
+ + KK K +A + G N A A PPN
Sbjct: 61 QPKPIQTEDKKAKKLKNAGEVGATNNSAT-------------------------AEQPPN 95
Query: 172 NILFVQNVPHDTTPMALQMFF 192
ILF+ N+P +T M L M F
Sbjct: 96 QILFLTNLPEETNEMMLSMLF 116
>gi|258564638|ref|XP_002583064.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908571|gb|EEP82972.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 183
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 68/96 (70%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y +NL +KVK L+ +L+ +F +G +L+++A KT K +GQA +VF+D+ ++T
Sbjct: 13 PNQTLYCSNLPDKVKKPDLRLALYTLFSTYGVVLDVVAMKTEKMRGQAHIVFRDIQTSTQ 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ +QGF F+ K +RI YAK SDIIAK GT+ P
Sbjct: 73 AMRALQGFNFFGKEIRIVYAKGSSDIIAKLRGTYAP 108
>gi|340520969|gb|EGR51204.1| predicted protein [Trichoderma reesei QM6a]
Length = 172
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN TIYI NL + K++ L+ +L+ +F FG +L+I+A KT++ +GQA +VF+D+ +
Sbjct: 23 IPPNQTIYITNLPSAKIQKQDLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQA 82
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ M G F +PM+IQYAK+KS +AK DGTF
Sbjct: 83 ATQAMRTMDGQTFLGRPMKIQYAKSKSHFVAKLDGTF 119
>gi|336373622|gb|EGO01960.1| hypothetical protein SERLA73DRAFT_177630 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386441|gb|EGO27587.1| hypothetical protein SERLADRAFT_461313 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+YINNLN+K+ ++++ L A+F G +++++A K K +GQA+LVF D+A AT
Sbjct: 9 PNTTLYINNLNDKINKEEMRSQLFALFTTHGRVIDVVASKGPKMRGQAFLVFTDLAGATT 68
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAK-ADGTFVP--------------------RER 112
A+ +G FYDKP+RI YAK+KS ++ D FVP ++
Sbjct: 69 AMRACEGMIFYDKPLRITYAKSKSYATSRREDPNFVPPTSVHARSNLLQIGKSTISSADK 128
Query: 113 RKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172
R+R EE + + +++P + +P+ P+
Sbjct: 129 RQRDEEDVDGERKSKRERSEEESEDDEEMEIDEDEEQQNRVP------ATMPQITEQPSA 182
Query: 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRM 203
L N+P + T L + F Q+ GF+ +
Sbjct: 183 HLLCTNLPQEVTDDVLSVLFQQYQGFQSTHV 213
>gi|353239405|emb|CCA71318.1| related to small nuclear ribonucleoprotein U2B` (U2 small nuclear
RNA-associated protein B`) [Piriformospora indica DSM
11827]
Length = 146
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+YI NLN+++ D+L+ L+A+F G IL+++A KT K +GQA++VF+D+ +AT
Sbjct: 3 NPNPTLYIKNLNDRINKDELRAQLYALFLPHGPILDVVALKTAKMRGQAFVVFQDMIAAT 62
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKA-DGTFVP 109
AA+ QG FYDKPM I+YAK+KS KA D FVP
Sbjct: 63 AALRAWQGEMFYDKPMHIEYAKSKSWATLKAEDPNFVP 100
>gi|310793820|gb|EFQ29281.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 203
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+Y+ NL + K++ L+ L+ +F +G +L+I+A KT+K +GQA + F+DV +
Sbjct: 23 IPPNQTLYVTNLPSNKIQKQDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITFRDVQT 82
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ ++GF F +P+ IQYAK+KSD +AK DGT+
Sbjct: 83 ATQAMRSLEGFEFLGRPLTIQYAKSKSDFVAKLDGTY 119
>gi|330905989|ref|XP_003295311.1| hypothetical protein PTT_00381 [Pyrenophora teres f. teres 0-1]
gi|311333503|gb|EFQ96597.1| hypothetical protein PTT_00381 [Pyrenophora teres f. teres 0-1]
Length = 198
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 68/90 (75%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+Y+ NL +K++ + LK++L+ +F +G IL+I+A KT+K +GQA +VF+DV S+T A+
Sbjct: 40 LYVRNLPDKLQKEHLKRNLYMLFATYGVILDIVALKTMKMRGQAHVVFRDVDSSTQAMRA 99
Query: 78 MQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+Q F F+ K M+I YAKTKSD IAK DGT+
Sbjct: 100 LQAFTFFGKDMQISYAKTKSDTIAKLDGTY 129
>gi|154278922|ref|XP_001540274.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412217|gb|EDN07604.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 190
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
V N G +PN T+Y NL +K+K L+ +L+ +F +GT+L+I+A KT K +GQA +V
Sbjct: 9 VVNVG---APNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVV 65
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
F+D+ ++T A+ +QGF F+ K M+I YAK SDIIAK GT+
Sbjct: 66 FRDIQASTQAMRALQGFEFFGKEMKIVYAKGSSDIIAKLRGTY 108
>gi|225554392|gb|EEH02691.1| RNA binding domain-containing protein [Ajellomyces capsulatus
G186AR]
Length = 190
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
V N G +PN T+Y NL +K+K L+ +L+ +F +GT+L+I+A KT K +GQA +V
Sbjct: 9 VVNVG---APNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVV 65
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
F+D+ ++T A+ +QGF F+ K M+I YAK SDIIAK GT+
Sbjct: 66 FRDIQASTQAMRALQGFEFFGKEMKIVYAKGSSDIIAKLRGTY 108
>gi|303313750|ref|XP_003066884.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106551|gb|EER24739.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 182
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 69/97 (71%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ +L+ +F +GT+L+++A KT K +GQA +VF+D+ ++T
Sbjct: 13 PNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDIQTSTQ 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
A+ +QGF F+ K M+I YAK SDIIAK GT+ P+
Sbjct: 73 AMRALQGFNFFGKEMKIVYAKGNSDIIAKLRGTYAPQ 109
>gi|119185131|ref|XP_001243379.1| hypothetical protein CIMG_07275 [Coccidioides immitis RS]
gi|392866259|gb|EAS28872.2| RNA binding domain-containing protein [Coccidioides immitis RS]
Length = 182
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 69/97 (71%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ +L+ +F +GT+L+++A KT K +GQA +VF+D+ ++T
Sbjct: 13 PNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDIQTSTQ 72
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
A+ +QGF F+ K M+I YAK SDIIAK GT+ P+
Sbjct: 73 AMRALQGFNFFGKEMKIVYAKGNSDIIAKLRGTYAPQ 109
>gi|393215680|gb|EJD01171.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 268
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I+PN T+Y+NNLN+K+ D+LK+ L + F +G +++I+A K+ + KGQA++VF D+ A
Sbjct: 5 IAPNPTLYVNNLNDKINKDELKKQLFSFFTTYGRVIDIIAIKSARMKGQAFVVFADLPEA 64
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP 109
T A+ +G FYDKP+ I YAK+KS ++ + D F+P
Sbjct: 65 TTAMRACEGMIFYDKPLHIHYAKSKSYAVLRREDPDFIP 103
>gi|402217410|gb|EJT97490.1| RNA-binding domain-containing protein, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 176
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 29/139 (20%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN +YINNLN+K+ ++L+ L+A+F +G +++++A K K KGQA++VF D+A AT
Sbjct: 5 PNTCLYINNLNDKINKEELRAQLYALFTPYGKVIDVVARKGTKMKGQAFVVFGDLAGATT 64
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSD-----------------------------IIAKAD 104
A+ M G FYDKPM IQY +TKS ++++A+
Sbjct: 65 AMRAMDGEFFYDKPMHIQYGRTKSHATIRIEQGADAVPFGARSSTTVNGKSEKIVMSRAE 124
Query: 105 GTFVPRERRKRHEEKGKKR 123
G RER K+ E +G KR
Sbjct: 125 GEAADRERAKKEELEGGKR 143
>gi|240273174|gb|EER36696.1| RNA binding domain-containing protein [Ajellomyces capsulatus H143]
gi|325089200|gb|EGC42510.1| RNA binding domain-containing protein [Ajellomyces capsulatus H88]
Length = 190
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
V N G +PN T+Y NL +K+K L+ +L+ +F +GT+L+I+A KT K +GQA +V
Sbjct: 9 VVNVG---APNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVV 65
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
F+D+ ++T A+ +QGF F+ K M+I YA+ SDIIAK GT+
Sbjct: 66 FRDIQASTQAMRALQGFEFFGKEMKIVYARGSSDIIAKLRGTY 108
>gi|443921864|gb|ELU41399.1| NLI interacting factor-like phosphatase [Rhizoctonia solani AG-1
IA]
Length = 894
Score = 99.8 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 114/229 (49%), Gaps = 29/229 (12%)
Query: 14 PNNTIYINNLNEKVKID---QLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
PN T+YI NLN++VK D +LK L+A+F +G I++++A K K +GQA++VF+D+A
Sbjct: 42 PNKTLYIKNLNDQVKKDGQSKLKSQLYALFTPYGRIVDVVAIKNPKMRGQAFVVFQDLAG 101
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
ATAA+ G FYDK M+I+YAKT+S +R EE G + A
Sbjct: 102 ATAAMRAWDGELFYDKEMKIEYAKTRS-------------HATRRIEEPGWDPLAEAKAK 148
Query: 131 QAGMGLNPAYAGAYGATPPL------SQIPYPGGAKSVIPEAPAPP-NNILFVQNVPHDT 183
G+G G + S P P SV A ++ L N+P +T
Sbjct: 149 ALGLGSRLKKEARQGDGEAMDMDDDQSSNPNPQQNSSVPSTYSAVTISSRLLCTNIPAET 208
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPG---IAFVEYGDEMQATVAMQSLQ 229
+ LQ F Q+PGF+ +V PG A V++ QA VA + L
Sbjct: 209 SQDTLQKLF-QYPGFQS--LVLTPPGQAKSAQVQFEQPDQAKVAREGLH 254
>gi|239611716|gb|EEQ88703.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ER-3]
Length = 190
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 70/103 (67%), Gaps = 3/103 (2%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
V N G +PN T+Y NL +K+K L+ +L+ +F +GT+L+++A KT K +GQA +V
Sbjct: 9 VVNVG---APNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVV 65
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
F+D+ ++T A+ +QGF F+ K M+I Y K SDIIAK GT+
Sbjct: 66 FRDIQASTQAMRALQGFEFFGKEMKIAYGKGSSDIIAKLRGTY 108
>gi|261201324|ref|XP_002627062.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239592121|gb|EEQ74702.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
Length = 190
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 70/103 (67%), Gaps = 3/103 (2%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV 64
V N G +PN T+Y NL +K+K L+ +L+ +F +GT+L+++A KT K +GQA +V
Sbjct: 9 VVNVG---APNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVV 65
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
F+D+ ++T A+ +QGF F+ K M+I Y K SDIIAK GT+
Sbjct: 66 FRDIQASTQAMRALQGFEFFGKEMKIAYGKGSSDIIAKLRGTY 108
>gi|358373502|dbj|GAA90100.1| RNA binding domain protein [Aspergillus kawachii IFO 4308]
Length = 196
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ SL+ +F +GT+L+++A KT K +GQA +VFKDV ++T
Sbjct: 23 PNQTLYCTNLPDKLRKHDLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQ 82
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M+I YAK SD+IA+ GT+
Sbjct: 83 AMRALQGFEFFGKQMKIVYAKGPSDVIARLRGTY 116
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 153 IPYPGGAKSVIPEAPAPPNNILFVQNVP-----HDTTPMALQMFFSQFPGFKEVRMVEAK 207
IP GG + A PN L+ N+P HD ++L M FS + +V ++ +
Sbjct: 6 IPTRGGGQGKPASATGLPNQTLYCTNLPDKLRKHDLR-LSLYMLFSTYGTVLDVVAMKTQ 64
Query: 208 P--GIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
G A + + D +T AM++LQ + +Q+ I YAK
Sbjct: 65 KMRGQAHIVFKDVQASTQAMRALQGFEFFGKQMKIVYAK 103
>gi|317037413|ref|XP_001399113.2| RNA binding domain protein [Aspergillus niger CBS 513.88]
Length = 196
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ SL+ +F +GT+L+++A KT K +GQA +VFKDV ++T
Sbjct: 23 PNQTLYCTNLPDKLRKHDLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQ 82
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M+I YAK SD+IA+ GT+
Sbjct: 83 AMRALQGFEFFGKQMKIVYAKGPSDVIARLRGTY 116
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 153 IPYPGGAKSVIPEAPAPPNNILFVQNVP-----HDTTPMALQMFFSQFPGFKEVRMVEAK 207
+P GG + A PN L+ N+P HD ++L M FS + +V ++ +
Sbjct: 6 LPARGGGQGKPASATGLPNQTLYCTNLPDKLRKHDLR-LSLYMLFSTYGTVLDVVAMKTQ 64
Query: 208 P--GIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
G A + + D +T AM++LQ + +Q+ I YAK
Sbjct: 65 KMRGQAHIVFKDVQASTQAMRALQGFEFFGKQMKIVYAK 103
>gi|121709896|ref|XP_001272564.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
gi|119400714|gb|EAW11138.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
Length = 194
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ SL+ +F +GT+L+++A KT K +GQA +VFKDV ++T
Sbjct: 22 PNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQ 81
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M+I YAK SD+IA+ GT+
Sbjct: 82 AMRALQGFDFFGKEMKIVYAKGSSDVIARLRGTY 115
>gi|443896718|dbj|GAC74062.1| spliceosomal protein snRNP-U1A/U2B [Pseudozyma antarctica T-34]
Length = 581
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 26/236 (11%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+YI NLNEKVK++ +K +L +F + +L + + ++ +GQA++ V +A A
Sbjct: 82 TLYIQNLNEKVKLETMKATLVNLFSNYANVLSVTSHTNVRMRGQAFVALDSVEAADKARR 141
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIA----------KADGTFVPRERRKRHEEKGKK---- 122
+ FP Y K M+I +AK+KSD + ++D +E+R H++ ++
Sbjct: 142 EAHLFPLYGKAMKISFAKSKSDAVVAQETAESGGKESDDFQKHKEQRLEHKKMARRGNVL 201
Query: 123 RKDQHD----ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQN 178
R+ + + A +A G A GA +Q +P+ PPN +LF+Q
Sbjct: 202 RRRELEKKIRAKRAAAGEIAEPEKASGAAAKRAQ--------HDMPDEYLPPNKMLFLQK 253
Query: 179 VPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234
+P L+ FS + G+ +V+ + K IAFVE+ D + A +L G
Sbjct: 254 IPDGVGKGELESLFSAYSGYVDVQTIPGKADIAFVEFSDIPSSVTARGALNGYNFG 309
>gi|115400914|ref|XP_001216045.1| hypothetical protein ATEG_07424 [Aspergillus terreus NIH2624]
gi|114189986|gb|EAU31686.1| hypothetical protein ATEG_07424 [Aspergillus terreus NIH2624]
Length = 188
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ SL+ +F +GT+L+++A KT K +GQA +VFKDV ++T
Sbjct: 20 PNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQ 79
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M+I YAK SD+IA+ GT+
Sbjct: 80 AMRALQGFEFFGKQMKIVYAKGTSDVIARLRGTY 113
>gi|397514483|ref|XP_003827514.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Pan paniscus]
Length = 176
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 109/240 (45%), Gaps = 70/240 (29%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN IYINN+N+K+K + LK+ HA+F QFG ++ I+A KT+K + + + S
Sbjct: 2 DIRPNRLIYINNMNDKIKEEGLKRFPHALFSQFGHVVSIVALKTMK------MXCRTLGS 55
Query: 71 ATAAVEKMQGFPFYDK----PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQ 126
+T A+ ++QGFP YD PM+IQY AK D + K + KRK++
Sbjct: 56 STNALRQLQGFPLYDNLHXFPMQIQY--------AKTDSDIIS----KMCDTFSDKRKEK 103
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
+P + N+P +T M
Sbjct: 104 ----------SPNF-------------------------------------NLPAETHEM 116
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
L + F+ FPGFK+VR V K GIA VE+ + A +LQ K+ + IT KK
Sbjct: 117 MLSVLFNWFPGFKKVRFVPGKHGIALVEFENGKXAGALSAALQGFKVTLSHAMKITCVKK 176
>gi|85112108|ref|XP_964275.1| hypothetical protein NCU02780 [Neurospora crassa OR74A]
gi|28926050|gb|EAA35039.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|336465439|gb|EGO53679.1| hypothetical protein NEUTE1DRAFT_126932 [Neurospora tetrasperma
FGSC 2508]
gi|350295272|gb|EGZ76249.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 198
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 14 PNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
PN T+Y+ NL + K++ D L+ +L+ +F +G +L+++A KT+K +GQA +V++D+ +AT
Sbjct: 20 PNQTLYVTNLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRDIQTAT 79
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ + G F + M+I YAK +S+IIAK DGT VP
Sbjct: 80 QAMRSLDGMEFLGRKMKITYAKGRSNIIAKLDGTLVP 116
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 169 PPNNILFVQNVPH-----DTTPMALQMFFSQF-PGFKEVRMVEAK-PGIAFVEYGDEMQA 221
PPN L+V N+P D AL M FS + P V + K G A + Y D A
Sbjct: 19 PPNQTLYVTNLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRDIQTA 78
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
T AM+SL ++ +++ ITYAK
Sbjct: 79 TQAMRSLDGMEFLGRKMKITYAK 101
>gi|408396032|gb|EKJ75200.1| hypothetical protein FPSE_04591 [Fusarium pseudograminearum CS3096]
Length = 202
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+Y+ NL + K++ D L+ +L+ +F +G +L+++A KT+K +GQA + F+DV S
Sbjct: 24 IPPNQTLYVTNLPSSKIQKDDLRTALYLLFSTYGPVLDVVALKTMKMRGQAHITFRDVQS 83
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ ++G F + ++IQYAK+KS+ +AK DGTF
Sbjct: 84 ATQAMRSLEGQSFLGRDLKIQYAKSKSNFVAKLDGTF 120
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 167 PAPPNNILFVQNVPH-----DTTPMALQMFFSQF-PGFKEVRMVEAK-PGIAFVEYGDEM 219
P PPN L+V N+P D AL + FS + P V + K G A + + D
Sbjct: 23 PIPPNQTLYVTNLPSSKIQKDDLRTALYLLFSTYGPVLDVVALKTMKMRGQAHITFRDVQ 82
Query: 220 QATVAMQSLQSLKIGQQQLLITYAK 244
AT AM+SL+ + L I YAK
Sbjct: 83 SATQAMRSLEGQSFLGRDLKIQYAK 107
>gi|346978290|gb|EGY21742.1| U2 small nuclear ribonucleoprotein B [Verticillium dahliae VdLs.17]
Length = 194
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I+PN T+Y+ NL + K++ L+ L+ +F +G +L+I+A KT+K +GQA + ++D+ +
Sbjct: 23 IAPNQTLYVTNLPSAKIQKPDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITYRDIQT 82
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ ++GF F +P+RIQYAK+KSD IA+ D F
Sbjct: 83 ATQAMRSLEGFEFLGRPLRIQYAKSKSDFIARLDPNF 119
>gi|358379777|gb|EHK17456.1| hypothetical protein TRIVIDRAFT_194675 [Trichoderma virens Gv29-8]
Length = 196
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+Y+ NL + K++ L+ +L+ +F FG +L+I+A KT++ +GQA +VF+D+ +
Sbjct: 23 IPPNQTLYVTNLPSAKIQKPDLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQA 82
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ + G F +PM+IQYAK+KS +AK DGTF
Sbjct: 83 ATQAMRSLDGQTFLGRPMKIQYAKSKSHFVAKLDGTF 119
>gi|406603206|emb|CCH45243.1| U1 small nuclear ribonucleoprotein [Wickerhamomyces ciferrii]
Length = 232
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 38/235 (16%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
++YI N+NEKV I+ +K L +F +G I I A K +K +GQA++ + A A++
Sbjct: 30 SVYIRNINEKVSINTIKSKLTEIFDNYGPIQSITAHKNVKMRGQAFVSLESEEKAQQAIK 89
Query: 77 KMQGFPFYDKPMRIQYAK------TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
++ G ++K + + +AK ++ ++ K ++ +RK H+E+ K+K+Q
Sbjct: 90 ELNGTQLFEKKIEVSFAKSSSNSSVENKLVEKDYNEYL--NKRKLHKEELDKKKEQEPVK 147
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ + + PPN IL VQ +P D T L
Sbjct: 148 KPKIKI-----------------------------ENLPPNKILLVQGLPKDVTQDELVE 178
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F ++ GF EVR+V + G+AF+EY ++ A A + L I + ++ +AKK
Sbjct: 179 IFEKYNGFVEVRLVAVR-GVAFIEYENDKDAIPAKEGTADLTIKDTKPIVNFAKK 232
>gi|392593039|gb|EIW82365.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 154
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ T+YINNLN+KV ++L+ L+A+F G +++++A K K +GQA+LVF D+ASA
Sbjct: 3 VQPSPTLYINNLNDKVNKEELRIQLYALFTTHGKLIDVVASKGPKMRGQAFLVFSDLASA 62
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP 109
T A+ +G FYDKP+RI YAK KS + K D FVP
Sbjct: 63 TTAMRACEGMVFYDKPLRIAYAKEKSYATLRKEDPDFVP 101
>gi|315045578|ref|XP_003172164.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
gi|311342550|gb|EFR01753.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
Length = 186
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 67/97 (69%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +G +L+++A ++ +GQA +VF+DV ++T
Sbjct: 12 APNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTST 71
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ +QGF F+ K M+I YAK SDIIAK GTF P
Sbjct: 72 QAMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTFNP 108
>gi|430813156|emb|CCJ29457.1| unnamed protein product [Pneumocystis jirovecii]
Length = 121
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 64/81 (79%)
Query: 27 VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86
+K + L+QSL+ +F +G +L+I+A KT+K +GQA +VF+DVASATAA+ +QGF F+ K
Sbjct: 6 IKKEDLRQSLYCLFSFYGPVLDIIALKTMKMRGQAHIVFRDVASATAAMRALQGFVFFGK 65
Query: 87 PMRIQYAKTKSDIIAKADGTF 107
M+I+YA+ KS+ IAK DGTF
Sbjct: 66 EMKIEYARRKSNAIAKLDGTF 86
>gi|452980615|gb|EME80376.1| hypothetical protein MYCFIDRAFT_31866 [Pseudocercospora fijiensis
CIRAD86]
Length = 200
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 74/112 (66%), Gaps = 8/112 (7%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+++PN ++YI NL EK++ LK++L+ + +G +L+I A KT K +GQA ++F+DV S
Sbjct: 16 KVTPNQSLYIQNLPEKLQKADLKRNLYMLLSTYGPVLDITALKTPKMRGQAHVLFRDVNS 75
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
AT A+ QG+ F+ + M+I YAK++S+ +AK GTF HEE+ K
Sbjct: 76 ATQAMRHCQGYEFFGREMKISYAKSRSNTLAKLTGTF--------HEEQASK 119
>gi|134084710|emb|CAK43367.1| unnamed protein product [Aspergillus niger]
gi|350630864|gb|EHA19236.1| hypothetical protein ASPNIDRAFT_126281 [Aspergillus niger ATCC
1015]
Length = 177
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 67/94 (71%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN ++Y NL +K++ L+ SL+ +F +GT+L+++A KT K +GQA +VFKDV ++T
Sbjct: 4 PNCSLYCTNLPDKLRKHDLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQ 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M+I YAK SD+IA+ GT+
Sbjct: 64 AMRALQGFEFFGKQMKIVYAKGPSDVIARLRGTY 97
>gi|328850245|gb|EGF99412.1| hypothetical protein MELLADRAFT_40307 [Melampsora larici-populina
98AG31]
Length = 252
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 15/227 (6%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP+ T+Y+ NL +K+K + L++ L+ +F G +L+++A K + +GQA++VF+D+ +T
Sbjct: 21 SPSPTLYVQNLCDKLKKEDLRRMLYQLFSVHGKVLDVVALKGGQMRGQAFIVFRDLQGST 80
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVPRERR-----KRHEEKGKKRKDQ 126
A+ + G F ++ ++I+YA+ +S + + G V + R + + K
Sbjct: 81 QAMRYLDGTLFLERELKIKYARKRSFATVKQIAGDEVLYQVRLGLIDPETLQDVARSKLT 140
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
QA PA + A A P G PN +LF++ +P + T
Sbjct: 141 VSGAQAANVKQPADSAAAAAVKAAGSAPVLSGED---------PNPVLFLEGLPAEVTDD 191
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
+ + F Q+PGF+ VR+V + GI FV+Y Q+ +A +L ++
Sbjct: 192 MMAVLFQQYPGFQSVRLVPGRTGIGFVQYDTSTQSDMAKTALDGFQL 238
>gi|425770060|gb|EKV08535.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum Pd1]
gi|425771753|gb|EKV10190.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum PHI26]
Length = 188
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 13 SPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+PN T+Y NL + +++ + L+ +L+A+F +GT+L+++ KT+K +GQA +VFKDV ++
Sbjct: 21 APNQTLYCTNLPDRRIQKNDLRTALYALFSTYGTVLDVVTMKTVKMRGQAHIVFKDVQAS 80
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
T A+ +QGF F+ K M+I YAK S++I+K GT+V
Sbjct: 81 TQALRALQGFEFFGKQMKIVYAKGSSNVISKLRGTYV 117
>gi|336265527|ref|XP_003347534.1| hypothetical protein SMAC_04840 [Sordaria macrospora k-hell]
gi|380096401|emb|CCC06449.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 257
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 14 PNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
PN T+Y+ NL + K++ D L+ +L+ +F +G +L+++A KT+K +GQA +V++D+ +AT
Sbjct: 80 PNQTLYVANLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRDIQTAT 139
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ + G F + M+I YAK +S+IIAK DGT VP
Sbjct: 140 QAMRSLDGMEFLGRQMKITYAKGRSNIIAKLDGTLVP 176
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 170 PNNILFVQNVPH-----DTTPMALQMFFSQF-PGFKEVRMVEAK-PGIAFVEYGDEMQAT 222
PN L+V N+P D AL M FS + P V + K G A + Y D AT
Sbjct: 80 PNQTLYVANLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRDIQTAT 139
Query: 223 VAMQSLQSLKIGQQQLLITYAK 244
AM+SL ++ +Q+ ITYAK
Sbjct: 140 QAMRSLDGMEFLGRQMKITYAK 161
>gi|449295164|gb|EMC91186.1| hypothetical protein BAUCODRAFT_59124, partial [Baudoinia
compniacensis UAMH 10762]
Length = 97
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 64/96 (66%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN +IYI NL EK++ + L++ L+ +F +G +L+++A KT K +GQA + +DV SAT
Sbjct: 1 PNQSIYIQNLPEKLQKEDLRRELYMLFSTYGPVLDVIALKTAKMRGQAHVTMRDVQSATQ 60
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ QGF + MR+ Y+K +SD IAK GTF P
Sbjct: 61 AIRACQGFELCGREMRLSYSKNRSDAIAKLTGTFNP 96
>gi|225680763|gb|EEH19047.1| U1 small nuclear ribonucleoprotein A [Paracoccidioides brasiliensis
Pb03]
Length = 197
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 67/95 (70%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +GT+L+++A KT K +GQA +VF+D+ ++T
Sbjct: 14 APNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQAST 73
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M+I Y K S+IIAK GT+
Sbjct: 74 QAMRALQGFEFFGKEMKIVYGKGSSNIIAKLRGTY 108
>gi|425868378|gb|AFY04321.1| sans fille, partial [Clogmia albipunctata]
Length = 116
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
+GQA+++FK++ SAT A+ MQGFPFYDKPMRIQY+K SD+IAK GTF +ER K+ +
Sbjct: 1 RGQAFVIFKELGSATNALRTMQGFPFYDKPMRIQYSKVDSDVIAKLKGTF--KERPKKIK 58
Query: 118 EKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQ 177
D+ A + NP A + A PPN ILF+
Sbjct: 59 APKSTNPDEKKAKKQKNASNPDAPHANNNS-----------------TAEQPPNQILFLT 101
Query: 178 NVPHDTTPMALQMFF 192
N+P +T M L M F
Sbjct: 102 NLPEETNEMMLPMLF 116
>gi|255938712|ref|XP_002560126.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584747|emb|CAP74273.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 188
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Query: 13 SPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+PN T+Y NL +++++ + L+ +L+++F +GT+L+++A KT K +GQA +VFKDV ++
Sbjct: 21 APNQTLYCTNLPDKRIQKNDLRTALYSLFSTYGTVLDVVAMKTSKMRGQAHIVFKDVQAS 80
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
T A+ +QGF F+ K M+I YAK S++I+K GT+V
Sbjct: 81 TQALRALQGFEFFGKQMKIVYAKGSSNVISKLRGTYV 117
>gi|327304471|ref|XP_003236927.1| RNA binding domain-containing protein [Trichophyton rubrum CBS
118892]
gi|326459925|gb|EGD85378.1| RNA binding domain-containing protein [Trichophyton rubrum CBS
118892]
Length = 186
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +G +L+++A ++ +GQA +VF+DV ++T
Sbjct: 12 APNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTST 71
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ +QGF F+ K M+I YAK SDIIAK GT+ P
Sbjct: 72 QAMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTYNP 108
>gi|326484964|gb|EGE08974.1| U1 small nuclear ribonucleoprotein A [Trichophyton equinum CBS
127.97]
Length = 186
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +G +L+++A ++ +GQA +VF+DV ++T
Sbjct: 12 APNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTST 71
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ +QGF F+ K M+I YAK SDIIAK GT+ P
Sbjct: 72 QAMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTYNP 108
>gi|326472762|gb|EGD96771.1| U1 small nuclear ribonucleoprotein A [Trichophyton tonsurans CBS
112818]
Length = 186
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +G +L+++A ++ +GQA +VF+DV ++T
Sbjct: 12 APNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTST 71
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ +QGF F+ K M+I YAK SDIIAK GT+ P
Sbjct: 72 QAMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTYNP 108
>gi|295672938|ref|XP_002797015.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282387|gb|EEH37953.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
Length = 197
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 67/95 (70%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +GT+L+++A KT K +GQA +VF+D+ ++T
Sbjct: 14 APNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQAST 73
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K M+I Y K S+IIAK GT+
Sbjct: 74 QAMRALQGFEFFGKEMKIVYGKGSSNIIAKLRGTY 108
>gi|346320333|gb|EGX89934.1| Nucleotide-binding, alpha-beta plait [Cordyceps militaris CM01]
Length = 201
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN TIYI NL + K++ D L+ +L+ +F FG +L+I+A KT+ +GQA +VF+D+ +
Sbjct: 22 IPPNQTIYITNLPSAKIQKDDLRTALYMLFSTFGPVLDIVALKTMSMRGQAHIVFRDIQA 81
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
AT A+ + G F + M+IQYAK+KS ++K DGT
Sbjct: 82 ATQAMRTLDGEEFLGRAMKIQYAKSKSHFVSKIDGTLT 119
>gi|358060915|dbj|GAA93431.1| hypothetical protein E5Q_00072 [Mixia osmundae IAM 14324]
Length = 298
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 69/287 (24%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G + PN T+Y+ L+ +K + LK+ LH++F G +L+++A K K +GQA++V++ +
Sbjct: 8 GTTLPPNTTLYVQGLDASIKKEDLKRLLHSLFSVHGHLLDVVALKGPKMRGQAFVVYESL 67
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKS----------DII----------------AK 102
SAT A + G F +PMRI YAKTKS D++ K
Sbjct: 68 TSATTARRREDGAIFCGQPMRISYAKTKSHATIERESGKDVLYQIKMGIIKSQEEATANK 127
Query: 103 ADGTFVPRE---------RRKRHEEKGKKRKDQHDANQAGM------GLNPAYAGAYGAT 147
G V + +R+R EE GKK++ A +AG+ T
Sbjct: 128 RKGKLVVSDAQNREETTRKRQRDEEAGKKKR----AGRAGVEGEEDEEEEDEDDDGDDET 183
Query: 148 PP---LSQIPYP---GGAKSVIPEA-------------PA--PPNNILFVQNVPHDTTPM 186
P L++ P GG + + ++ PA P ++IL V +P +TT
Sbjct: 184 EPSAGLAKKPRTVADGGEEEMQEDSDKEEADVAAANGQPAQRPSSHILAVHGLPQETTED 243
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
+L++ F Q+ G R+V GI + Y A VA+++L ++
Sbjct: 244 SLRLLFQQYAGLTGARIVR---GIGQIVYESPAHAAVALEALNQFQV 287
>gi|302501506|ref|XP_003012745.1| hypothetical protein ARB_00996 [Arthroderma benhamiae CBS 112371]
gi|291176305|gb|EFE32105.1| hypothetical protein ARB_00996 [Arthroderma benhamiae CBS 112371]
Length = 248
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 67/97 (69%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +G +L+++A ++ +GQA +VF+DV ++T
Sbjct: 74 APNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTST 133
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ +QGF F+ K M+I YAK SDIIAK GT+ P
Sbjct: 134 QAMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTYNP 170
>gi|440633480|gb|ELR03399.1| hypothetical protein GMDG_06136 [Geomyces destructans 20631-21]
Length = 213
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 14 PNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
PN T+YI NL + K++ L+ SL+ +F +G +L+++A KT+K +GQA +VF+D +AT
Sbjct: 21 PNQTLYITNLPSSKIQKYDLRLSLYTLFSTYGPVLDVVAMKTMKMRGQAHVVFRDAQTAT 80
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ ++GF F+ + IQYAK+KSD I+K DGTF
Sbjct: 81 QAMRALKGFEFFGYELDIQYAKSKSDTISKLDGTF 115
>gi|354547986|emb|CCE44721.1| hypothetical protein CPAR2_405250 [Candida parapsilosis]
Length = 228
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 119/237 (50%), Gaps = 18/237 (7%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P TIYINN+N+KV ID++K L + Q LA KTLK KGQA++ F+ + A+
Sbjct: 5 PKQTIYINNINDKVSIDKVKSVLATLLSQHKPTNISLA-KTLKLKGQAFVTFETIDDASK 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+E + + K + + +A+++SD++ D + + R+ RHEE K++ Q N+
Sbjct: 64 AIESLNNQEVFSKRISVTFARSESDVLL--DKNELKQIRKIRHEEHKIKKQSQA-KNKNK 120
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD--TTPMALQMF 191
L+ + +T +Q+ PPN IL +QN+ T + +
Sbjct: 121 TKLSKSVLDKTTSTKK-NQVDVDSWKN-------LPPNRILLLQNISASLPITKETIDSY 172
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ---QLLITYAKK 245
F + GF+ R V + ++F+E+ +E A +QS+ I + ++ +YAKK
Sbjct: 173 FQDYAGFEMARYVSVR-HLSFIEFENEDVAQNCLQSVNEDDIKSKFGNDIVFSYAKK 228
>gi|296805295|ref|XP_002843472.1| U1 small nuclear ribonucleoprotein A [Arthroderma otae CBS 113480]
gi|238844774|gb|EEQ34436.1| U1 small nuclear ribonucleoprotein A [Arthroderma otae CBS 113480]
Length = 186
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 67/97 (69%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +G +L+++A ++ +GQA +VF+DV ++T
Sbjct: 12 APNQTLYCTNLPDKLKKPDLRTALYTLFSTYGVVLDVVAMRSKGMRGQAHVVFRDVQTST 71
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
A+ +QGF F+ K M+I YAK SDI+AK GT+ P
Sbjct: 72 QAMRALQGFDFFGKEMKIVYAKGNSDIVAKLRGTYNP 108
>gi|452837349|gb|EME39291.1| hypothetical protein DOTSEDRAFT_138688 [Dothistroma septosporum
NZE10]
Length = 206
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 66/95 (69%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ ++Y+ NLNEK++ LK++L+ +F +G +++I A KT K +GQA ++F+D SAT
Sbjct: 17 PSQSLYVRNLNEKLQKPDLKRNLYMLFSTYGPVIDITALKTSKMRGQAHVLFRDQQSATQ 76
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
A+ QG F+ + MRI YAK++S +AK GTFV
Sbjct: 77 AMRHCQGSDFFGREMRISYAKSRSHTLAKLTGTFV 111
>gi|322792536|gb|EFZ16487.1| hypothetical protein SINV_12462 [Solenopsis invicta]
Length = 139
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 22/138 (15%)
Query: 89 RIQYAKTKSDIIAKADGTFVPRERRKRH------EE--KGKKRKDQHDANQAGMGLNPAY 140
RIQYAKT SDIIAK GTF R ++ + EE + KKR + + +G
Sbjct: 16 RIQYAKTDSDIIAKMKGTFAERPKKPKRVIPVADEEAKRAKKRAKEQAKHSQQIG----- 70
Query: 141 AGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKE 200
Y A+ P +PG + +PE P PN ILF+ N+P +T+ M L M F+QFPGFKE
Sbjct: 71 ---YHASVPQ----HPGLVNTAVPEQP--PNQILFLTNLPDETSEMMLSMLFNQFPGFKE 121
Query: 201 VRMVEAKPGIAFVEYGDE 218
VR+V + IAFVE+ +E
Sbjct: 122 VRLVPNRHDIAFVEFENE 139
>gi|358400597|gb|EHK49923.1| hypothetical protein TRIATDRAFT_297311 [Trichoderma atroviride IMI
206040]
Length = 198
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+Y+ NL + K++ L+ +L+ +F FG +L+I+A KT++ +GQA +VF+D+ +
Sbjct: 25 IPPNQTLYVTNLPSGKIQKADLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQA 84
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ + G F + M+IQYAK+KS +AK DGTF
Sbjct: 85 ATQAMRSLDGQSFLGRTMKIQYAKSKSHFVAKLDGTF 121
>gi|327348269|gb|EGE77126.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ATCC 18188]
Length = 196
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y NL +K+K L+ +L+ +F +GT+L+++A KT K +GQA +VF+D+ ++T
Sbjct: 14 APNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQAST 73
Query: 73 AAVEKMQGFPFYDKPMR------IQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K MR I Y K SDIIAK GT+
Sbjct: 74 QAMRALQGFEFFGKEMRHWDEQKIAYGKGSSDIIAKLRGTY 114
>gi|400603369|gb|EJP70967.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 200
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+Y+ NL + K++ D L+ +L+ +F FG +L+I+A KT+ +GQA +VF+D+ +
Sbjct: 22 IPPNQTLYVTNLPSAKIQKDDLRTALYMLFSTFGPVLDIVALKTMAMRGQAHIVFRDIQA 81
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ + G F + M+IQYAK+KS I+K DG+
Sbjct: 82 ATQAMRTLDGDEFLGRSMKIQYAKSKSHFISKIDGSL 118
>gi|212543363|ref|XP_002151836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
gi|210066743|gb|EEA20836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
Length = 177
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 69/103 (66%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
AN N +PN T+YI NL +K+K L+ +L+ +F +G +L+++ KT K +GQA +V+
Sbjct: 10 ANAKNVGAPNQTLYIKNLPDKIKKPDLRMALYTLFSTYGPVLDVVVLKTAKMRGQAHIVY 69
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
+D+ ++T A+ +QGF F+ K + I YAK S +IAK GT++
Sbjct: 70 RDIQASTQAMRALQGFDFFGKELNIVYAKGSSHVIAKLRGTYM 112
>gi|169769585|ref|XP_001819262.1| RNA binding domain protein [Aspergillus oryzae RIB40]
gi|83767121|dbj|BAE57260.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863485|gb|EIT72793.1| spliceosomal protein snRNP-U1A/U2B [Aspergillus oryzae 3.042]
Length = 193
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 65/94 (69%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K+ L+ SL+ +F +GT+L+++A KT + +GQA +VFKDV ++T
Sbjct: 23 PNQTLYCANLPDKLPKYDLRLSLYMLFSTYGTVLDVVAMKTKRMRGQAHIVFKDVQASTQ 82
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ K ++I YAK SD+IAK G +
Sbjct: 83 AMRALQGFEFFGKQLKIVYAKGTSDVIAKLRGAY 116
>gi|302926259|ref|XP_003054259.1| hypothetical protein NECHADRAFT_90073 [Nectria haematococca mpVI
77-13-4]
gi|256735200|gb|EEU48546.1| hypothetical protein NECHADRAFT_90073 [Nectria haematococca mpVI
77-13-4]
Length = 197
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+Y+ NL + K++ L+ +L+ +F +G +L+++A KT+ +GQA +VF+D+ +
Sbjct: 22 IPPNQTLYVTNLPSSKIQKADLRTALYMLFSTYGPVLDVVALKTMAMRGQAHIVFRDIQA 81
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ ++G F + ++IQYAK+KS+ +AK DGTF
Sbjct: 82 ATQAMRSLEGQTFLGRELKIQYAKSKSNFVAKLDGTF 118
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 167 PAPPNNILFVQNVPHDTTP-----MALQMFFSQFPGFKEVRMVE--AKPGIAFVEYGDEM 219
P PPN L+V N+P AL M FS + +V ++ A G A + + D
Sbjct: 21 PIPPNQTLYVTNLPSSKIQKADLRTALYMLFSTYGPVLDVVALKTMAMRGQAHIVFRDIQ 80
Query: 220 QATVAMQSLQSLKIGQQQLLITYAK 244
AT AM+SL+ ++L I YAK
Sbjct: 81 AATQAMRSLEGQTFLGRELKIQYAK 105
>gi|259016055|gb|ACV89309.1| sans fille [Platystoechotes sp. BMW-2009]
Length = 88
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 69/137 (50%), Gaps = 51/137 (37%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK+++SAT + MQGFPFYDKPMRIQYAK SDIIAK GTF +ER KR
Sbjct: 3 KMRGQAFVIFKEISSATNGIRAMQGFPFYDKPMRIQYAKKDSDIIAKLKGTF--QERPKR 60
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+E+ PPN ILF
Sbjct: 61 VKEQ-------------------------------------------------PPNQILF 71
Query: 176 VQNVPHDTTPMALQMFF 192
+ N+P +T+ M LQM F
Sbjct: 72 LTNLPDETSEMMLQMLF 88
>gi|149240716|ref|XP_001526207.1| hypothetical protein LELG_02765 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450330|gb|EDK44586.1| hypothetical protein LELG_02765 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 234
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 123/239 (51%), Gaps = 16/239 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P TIY+NNLN+KV I++L+ +L + + + I+ KTL+ KGQA++ F+DV +A A
Sbjct: 5 PKRTIYLNNLNDKVSINKLRSNLATLLQPYNPT-NIIVAKTLRLKGQAFITFQDVTNAQA 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ ++ + K MR +A ++D + P+E+++++ + + +++ +
Sbjct: 64 AINQLNNKQLFSKSMRASFAHLENDAV------LSPKEQQEQYSRRYTGKIERNKVAKLS 117
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA---PAPPNNILFVQNVPH-DTTPMALQ 189
G P A T + K+ I + PPN+IL +QN+ + ++
Sbjct: 118 RG-KPGNQRASTKTRKGDAVVEGQREKNNIDVSMWKNLPPNHILLLQNISSTQVSKETIE 176
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ---QLLITYAKK 245
F+ F GF+ R V+ + +AF+E+ +E A + ++ + ++ ++ +YAKK
Sbjct: 177 ALFTNFEGFENTRFVKVR-NLAFIEFENEEFAKQCLAAMDDTVLKEKFGNDIIFSYAKK 234
>gi|397638775|gb|EJK73209.1| hypothetical protein THAOC_05179 [Thalassiosira oceanica]
Length = 193
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKH-----KGQAWLVFKDV 68
P+ T+Y++N++ VK QLK+SL ++F + G +L+++ + +GQAW++F
Sbjct: 16 PSQTLYLSNIDWAVKKPQLKRSLLSLFSRHGKVLDVICLRGNGSGGKCLRGQAWVIFDSQ 75
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
++AT A+ +GF F+ +P+ + Y+ SD IAK +GT+ + + KR K++ ++ +
Sbjct: 76 SAATQALTAERGFVFFGRPLMVNYSAETSDRIAKRNGTYGQKTKEKRA---AKRKMEETE 132
Query: 129 ANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMAL 188
A A + TP +P +L + +P + T + L
Sbjct: 133 EGCAKKSARTAESNQGSDTP-----------------SP-----VLLAKELPDEVTSVML 170
Query: 189 QMFFSQFPGFKEV 201
+M F Q+ G+KEV
Sbjct: 171 EMLFRQYGGYKEV 183
>gi|226292456|gb|EEH47876.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 206
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 64/90 (71%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+Y NL +K+K L+ +L+A+F +GT+L+++A KT K +GQA +VF+D+ ++T A+
Sbjct: 28 LYCTNLPDKLKKPDLRLALYALFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQAMRA 87
Query: 78 MQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+QGF F+ K M+I Y K S+IIAK GT+
Sbjct: 88 LQGFEFFGKEMKIVYGKGSSNIIAKLRGTY 117
>gi|242786438|ref|XP_002480805.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720952|gb|EED20371.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
Length = 180
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 69/103 (66%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
AN N +PN T+YI NL +K++ L+ +L+ +F +G +L+++ +T K +GQA +V+
Sbjct: 13 ANAKNVGAPNQTLYIKNLPDKIRKPDLRMALYMLFSTYGPVLDVVVMRTAKMRGQAHIVY 72
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
+D+ ++T A+ +QGF F+ + + I YAK S +IAK GT++
Sbjct: 73 RDIQASTQAMRALQGFDFFGRELAIVYAKGSSHVIAKLRGTYM 115
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 170 PNNILFVQNVPHDTTP----MALQMFFSQF-PGFKEVRMVEAK-PGIAFVEYGDEMQATV 223
PN L+++N+P MAL M FS + P V M AK G A + Y D +T
Sbjct: 21 PNQTLYIKNLPDKIRKPDLRMALYMLFSTYGPVLDVVVMRTAKMRGQAHIVYRDIQASTQ 80
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM++LQ ++L I YAK
Sbjct: 81 AMRALQGFDFFGRELAIVYAK 101
>gi|389631617|ref|XP_003713461.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae 70-15]
gi|351645794|gb|EHA53654.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae 70-15]
gi|440463696|gb|ELQ33250.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae Y34]
gi|440481885|gb|ELQ62421.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae P131]
Length = 207
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 69/99 (69%), Gaps = 2/99 (2%)
Query: 11 EISPNNTIYINNL--NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
+I PN T+Y+ N+ ++ + ++ +L+ +F +G +L+++ KT+K +GQA +VF+D+
Sbjct: 23 QIPPNQTLYVRNIRSDKGYQKQDMRTALYMLFSTYGPLLDVVVLKTMKMRGQAHIVFRDI 82
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
++T A+ + GF F+ ++I+YAKTKS+ IAK DGTF
Sbjct: 83 HASTQAMRSLDGFDFFGSKLKIEYAKTKSNTIAKLDGTF 121
>gi|398395477|ref|XP_003851197.1| hypothetical protein MYCGRDRAFT_30914, partial [Zymoseptoria
tritici IPO323]
gi|339471076|gb|EGP86173.1| hypothetical protein MYCGRDRAFT_30914 [Zymoseptoria tritici IPO323]
Length = 111
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 65/96 (67%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN ++YI NL EK++ LK++L+ +F +G +++I A KT K +GQA ++F+D+ SA
Sbjct: 1 TPNQSLYIQNLPEKLQKSDLKRNLYMLFSTYGPVIDITALKTPKMRGQAHILFRDINSAQ 60
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
A+ + F+ + MRI YAK++S IAK GTFV
Sbjct: 61 LAMRNLNNMEFFGREMRIAYAKSRSQTIAKLTGTFV 96
>gi|194375486|dbj|BAG56688.1| unnamed protein product [Homo sapiens]
Length = 203
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 90/191 (47%), Gaps = 45/191 (23%)
Query: 99 IIAKADGTFVPRER-RKRHEEKGKKRKDQHDANQAGMGLNP---AYAGAYGATPPLSQIP 154
IIAK GTFV R+R R++ + K ++ A Q G G P A G PP++Q P
Sbjct: 14 IIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGG-GATPVVGAVQGPVPGMPPMTQAP 72
Query: 155 ---------------------------------------YPGGAKSVIPEAPAPPNNILF 175
PG P + PPN+ILF
Sbjct: 73 RIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILF 132
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
+ N+P +T + L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q
Sbjct: 133 LTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQ 192
Query: 236 QQLL-ITYAKK 245
+ I++AKK
Sbjct: 193 NNAMKISFAKK 203
>gi|401786831|gb|AFQ07875.1| sans fille, partial [Scaptomyza flava]
gi|401786833|gb|AFQ07876.1| sans fille, partial [Scaptomyza nigrita]
Length = 116
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 25/139 (17%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPP------ 54
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPH 181
A G + P A++ P + PPN ILF+ N+P
Sbjct: 55 -----------------KPAPGVEEKKDKKKKPSNAENSNPNTQTEQPPNQILFLTNLPE 97
Query: 182 DTTPMALQMFFSQFPGFKE 200
+T M L M F+QFPGFKE
Sbjct: 98 ETNEMMLSMLFNQFPGFKE 116
>gi|425868393|gb|AFY04327.1| sans fille, partial [Bombylius major]
Length = 115
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 70/137 (51%), Gaps = 22/137 (16%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ AT A+ MQGFPFYDKPMRI YAKT SDI+A+ GTF +ER K+
Sbjct: 1 KMRGQAFVIFKEIGXATNALRTMQGFPFYDKPMRIAYAKTDSDIVARIKGTF--KERPKK 58
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
K +K D + N + A PPN ILF
Sbjct: 59 V--KTQKPAPTEDKKEKKKKANNVDSSATNNA------------------TEXPPNQILF 98
Query: 176 VQNVPHDTTPMALQMFF 192
+ N P +T M L M F
Sbjct: 99 LTNXPEETNEMMLSMLF 115
>gi|425868409|gb|AFY04335.1| sans fille, partial [Megaselia scalaris]
Length = 113
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 71/137 (51%), Gaps = 24/137 (17%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ SA+ A+ MQGFPFYDKPMRI Y+KT SD++AK GTF
Sbjct: 1 KMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDVVAKLKGTF-------- 52
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+E+ KK K A + + A S A PPN ILF
Sbjct: 53 -KERPKKVKLPKAAPEEKKDKKKKTSNA---------------DNSANSTAEQPPNQILF 96
Query: 176 VQNVPHDTTPMALQMFF 192
+ N+P +T M L M F
Sbjct: 97 LTNLPEETNEMMLSMLF 113
>gi|425868411|gb|AFY04336.1| sans fille, partial [Ceratitis capitata]
Length = 116
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 21/137 (15%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K GQA+++FK++ SA+ A+ MQGFPFYDKPMRI Y+KT SDI+AK GTF +ER K+
Sbjct: 1 KMXGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIVAKIKGTF--KERPKK 58
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+ + + ++ N T P +Q PPN ILF
Sbjct: 59 VKPPKPVQNTEDKKDKKKKSSNAE------NTNPNTQ-------------TEQPPNQILF 99
Query: 176 VQNVPHDTTPMALQMFF 192
+ N+P +T M L M F
Sbjct: 100 LTNLPQETNEMMLSMLF 116
>gi|402078113|gb|EJT73462.1| U2 small nuclear ribonucleoprotein B [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 198
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 10 NEISPNNTIYINNL--NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD 67
++++PN T+Y+ ++ + ++ ++ +L+ +F +G +L+++A KT K +GQA +VF+D
Sbjct: 19 SQVAPNQTLYVRDIPSSRGLQKQDMRMALYMLFSTYGPVLDVVALKTSKMRGQAHIVFRD 78
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+ ++T A+ +Q F F+ ++I+YAKTKS+ +AK DGTF
Sbjct: 79 IHASTQAMRSLQDFDFFGSKLKIEYAKTKSNTVAKLDGTF 118
>gi|300174216|gb|ADJ68076.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174218|gb|ADJ68077.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174220|gb|ADJ68078.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174222|gb|ADJ68079.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174224|gb|ADJ68080.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174226|gb|ADJ68081.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174228|gb|ADJ68082.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174230|gb|ADJ68083.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174232|gb|ADJ68084.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174234|gb|ADJ68085.1| putative sansfille protein [Caenacis lauta]
Length = 120
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
++FK++ASAT A+ MQGFPFYDKPMRI Y+KT SD+IAK GTF R ++ +
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDVIAKMKGTFTERPKKPKRVIPA-- 58
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
D+ A G TP +Q + G A + +PE PPN ILF+ N+P +
Sbjct: 59 -ADEEAKKAKKRAKEQAKQQQMGYTPGATQ--HAGLANAAVPE--QPPNQILFLTNLPDE 113
Query: 183 TTPMAL 188
T+ M L
Sbjct: 114 TSEMML 119
>gi|170090870|ref|XP_001876657.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648150|gb|EDR12393.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 98
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 56/75 (74%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+NNLN+KV D+L+ L A+F +G I++I+A K+ K +GQA+LVF D+A AT+
Sbjct: 8 PNTTLYLNNLNDKVNKDELRTQLFALFTTYGKIIDIIASKSQKMRGQAFLVFTDLAGATS 67
Query: 74 AVEKMQGFPFYDKPM 88
A+ +G FYDKPM
Sbjct: 68 AMRACEGMMFYDKPM 82
>gi|425868416|gb|AFY04338.1| sans fille, partial [Physocephala marginata]
Length = 116
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 21/137 (15%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA++VFK+++SA+ A+ MQGFPFYDKPMRI YAKT SDI+AK GTF +ER K+
Sbjct: 1 KMRGQAFVVFKEISSASNALRTMQGFPFYDKPMRIAYAKTDSDIVAKIKGTF--KERPKK 58
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+ + + ++ A T P SQ PPN ILF
Sbjct: 59 VKPPKAPQVTEEKKDKK------KKAANAENTHPNSQ-------------TEQPPNQILF 99
Query: 176 VQNVPHDTTPMALQMFF 192
+ N+P +T M L M F
Sbjct: 100 LTNLPEETNEMMLSMLF 116
>gi|313236302|emb|CBY11622.1| unnamed protein product [Oikopleura dioica]
Length = 161
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 43/197 (21%)
Query: 53 KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
K K +GQA++ FKD++ A A+++MQGFPFY+K M I Y++ +S +I +A ++
Sbjct: 4 KAPKMRGQAFITFKDISDAANAMKRMQGFPFYEKAMNIAYSRRESHVITQAKKYVPAKDE 63
Query: 113 RKRHEEKGKK---RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169
R +E K +K D +
Sbjct: 64 RTLAKETNAKVAAKKKTSDEEE-------------------------------------- 85
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
P ++V+N+P + L + FSQFPGFK+ R V + G AFVE+ D AT A +LQ
Sbjct: 86 PAATIYVENLPDEANESMLNLLFSQFPGFKKSRPVPSG-GKAFVEFADAGAATSAKDALQ 144
Query: 230 SLKIG-QQQLLITYAKK 245
K+ ++ + +T++KK
Sbjct: 145 GFKVTPERPIKLTFSKK 161
>gi|453082261|gb|EMF10309.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 235
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 65/96 (67%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I P+ ++Y+ NL EK++ LK++L+ +F +G +L++ A KT K +GQA ++F+D +A
Sbjct: 14 IPPSQSLYLQNLPEKLQKHDLKRNLYMLFSTYGPVLDVTAVKTSKMRGQAHVLFRDANTA 73
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
T A+ QG F+ + +++ YAKT+S +AK GTF
Sbjct: 74 TQAMRHTQGMDFFGRELKVTYAKTRSQTLAKLTGTF 109
>gi|171696032|ref|XP_001912940.1| hypothetical protein [Podospora anserina S mat+]
gi|170948258|emb|CAP60422.1| unnamed protein product [Podospora anserina S mat+]
Length = 193
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 68/99 (68%), Gaps = 7/99 (7%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+ PN T+Y+ NL + K++ + L+ +L+ +F +G +L+++A KT+K +GQA +V+KD+ +
Sbjct: 17 VPPNQTLYVTNLPSNKIQKEDLRTALYMLFSTYGAVLDVVALKTMKMRGQAHIVYKDIQT 76
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
AT A+ + GF F+ + + +KS+IIAK DGTF P
Sbjct: 77 ATQAMRSLNGFEFFGREL------SKSNIIAKLDGTFKP 109
>gi|444708342|gb|ELW49419.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
gi|444708343|gb|ELW49420.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
Length = 130
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGAT 147
M+IQYAKT SDII+K GTF +E++K ++ + AN+ P A G +
Sbjct: 1 MQIQYAKTDSDIISKMHGTFADKEKKKEKKKAKTVEQAATTANKKPGQGTPNSANTQGNS 60
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
P Q+P PPN ILF+ N+P +T M L M F+QFPGFKEVR+ +
Sbjct: 61 TPNPQVP------------DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLAPGR 108
Query: 208 PGIAFVEYGDEMQATVAMQSLQ 229
AFVE+ ++ QA A +LQ
Sbjct: 109 HDSAFVEFENDGQAGAAGDALQ 130
>gi|425868391|gb|AFY04326.1| sans fille, partial [Asilus crabroniformis]
Length = 115
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 22/137 (16%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA++VFK++ASAT A+ MQGFPFYDKPM+I Y KT SD++A+ GT+ +ER K+
Sbjct: 1 KMRGQAFVVFKEIASATNALRTMQGFPFYDKPMKIAYGKTDSDVVARMKGTY--KERPKK 58
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+ A + S + S + + PPN ILF
Sbjct: 59 IKPPKP-----------------AQSEEKKEKKKKSTNSDTNNSNSTVEQ---PPNQILF 98
Query: 176 VQNVPHDTTPMALQMFF 192
+ N+P +T M L M F
Sbjct: 99 LTNLPEETXEMMLSMLF 115
>gi|119467920|ref|XP_001257766.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
gi|119405918|gb|EAW15869.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
Length = 213
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 19/113 (16%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y NL +K++ L+ SL+ +F +GT+L+++A KT K +GQA +VFKDV ++T
Sbjct: 22 PNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVALKTEKMRGQAHIVFKDVQASTQ 81
Query: 74 AVEKMQGFPFYDKPM-------------------RIQYAKTKSDIIAKADGTF 107
A+ +QGF F+ + M +I YAK SD+IA+ GT+
Sbjct: 82 AMRALQGFEFFGREMVGAFGFNGLATGLNTVYFQKIVYAKGTSDVIARLRGTY 134
>gi|409079971|gb|EKM80332.1| hypothetical protein AGABI1DRAFT_73428, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 160
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ T+Y+NNLN+ V ++L+ L+A+F G I++I+A KT K +GQA+LVF D+A+ATA
Sbjct: 5 PSPTLYLNNLNDHVNKEELRTQLYALFTTHGKIIDIVASKTQKMRGQAFLVFADLAAATA 64
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS-DIIAKADGTFVP 109
A+ +G FYDKP+RI YAK+KS + K D FVP
Sbjct: 65 AMRACEGMIFYDKPLRIDYAKSKSYATLRKEDPNFVP 101
>gi|401878862|gb|AFQ30723.1| putative sansfille, partial [Cecidostiba semifascia]
gi|401878866|gb|AFQ30725.1| putative sansfille, partial [Cecidostiba semifascia]
Length = 115
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
++FK++ASAT A+ MQGFPFYDKPMRI Y+KT SDIIAK GTF R ++ +
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRVIPA-- 58
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
D+ A G TP +Q + G A + +PE PPN ILF+ N+P +
Sbjct: 59 -ADEEAKKAKKRAKEQAKQQQMGYTPGAAQ--HAGLANAAVPE--QPPNQILFLTNLPDE 113
Query: 183 TT 184
T+
Sbjct: 114 TS 115
>gi|425868380|gb|AFY04322.1| sans fille, partial [Coboldia fuscipes]
Length = 116
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 20/135 (14%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
+GQA++ FK +ASA+ A+ MQGFPFYD PMRI Y+K+ SD+IA+ GTF +ER K+ +
Sbjct: 2 RGQAFVYFKXIASASNALRTMQGFPFYDXPMRIAYSKSDSDVIARMKGTF--KERPKKIK 59
Query: 118 EKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQ 177
D + +N +T A PPN ILF
Sbjct: 60 LPKSTNPDDKKEKKKKNXINADGTSVNNST------------------AEQPPNXILFXT 101
Query: 178 NVPHDTTPMALQMFF 192
N+P +T M L M F
Sbjct: 102 NLPEETNEMMLSMLF 116
>gi|401878864|gb|AFQ30724.1| putative sansfille, partial [Cecidostiba semifascia]
Length = 115
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
++FK++ASAT A+ MQGFPFYDKPMRI Y+KT SDIIAK GTF R ++ +
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRVIPA-- 58
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
D+ A G TP +Q + G A + +PE PPN ILF+ N+P +
Sbjct: 59 -ADEEAKKAKKRAKEQAKQQQMGYTPGAAQ--HTGLANAAVPE--QPPNQILFLTNLPDE 113
Query: 183 TT 184
T+
Sbjct: 114 TS 115
>gi|259016052|gb|ACV89308.1| sans fille [Musca domestica]
Length = 85
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 67/136 (49%), Gaps = 51/136 (37%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ASA+ A+ MQGFPFYDKPMRI YAKT SD++AK GTF
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKMKGTF-------- 52
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+E+ KK K+Q PPN ILF
Sbjct: 53 -KERPKKVKEQ------------------------------------------PPNQILF 69
Query: 176 VQNVPHDTTPMALQMF 191
+ N+P +T M L +
Sbjct: 70 LTNLPEETNEMMLSLL 85
>gi|425868435|gb|AFY04347.1| sans fille, partial [Exorista larvarum]
Length = 113
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 21/134 (15%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE 118
GQA+++FK++ASA+ A+ MQGFPFYDKPMRI YAKT SD++AK GTF +ER K+ +
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKIKGTF--KERPKKLKP 58
Query: 119 KGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQN 178
+ ++ N A A P + PPN ILF+ N
Sbjct: 59 PKPVAPVEDKKDKKKKASN-----AENANPNT--------------QTEQPPNQILFLTN 99
Query: 179 VPHDTTPMALQMFF 192
+P +T M L M F
Sbjct: 100 LPEETNEMMLPMLF 113
>gi|378726083|gb|EHY52542.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 200
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF----KTLKHKGQAWLVF 65
N +PN T+Y+ NLNEK+ ++LK++L+ +F +G +L+I+ K +GQA +V+
Sbjct: 17 NAGTPNQTLYVKNLNEKINKNELKRALYMLFSTYGPVLDIVTTRVGSKCQNMRGQAHIVY 76
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVP 109
+D+ ++T A+ +QGF + K M I Y K +S II K GTF P
Sbjct: 77 RDIQTSTQAMRALQGFDLFGKEMVIVYGKGQSQIIPKLRGTFEP 120
>gi|329317647|gb|AEB90958.1| putative sansfille [Mesopolobus amaenus]
gi|329317649|gb|AEB90959.1| putative sansfille [Mesopolobus amaenus]
gi|329317651|gb|AEB90960.1| putative sansfille [Mesopolobus amaenus]
Length = 115
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKK 122
++FK++ASAT A+ MQGFPFYDKPMRI Y+KT SDIIAK GTF R ++ +
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRVIPA-- 58
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
D+ A G TP +Q + G A + +PE PPN ILF+ N+P +
Sbjct: 59 -ADEEAKKAKKRAKEQAKQQQMGYTPGAAQ--HVGLANAAVPE--QPPNQILFLTNLPDE 113
Query: 183 TT 184
T+
Sbjct: 114 TS 115
>gi|164658503|ref|XP_001730377.1| hypothetical protein MGL_2759 [Malassezia globosa CBS 7966]
gi|159104272|gb|EDP43163.1| hypothetical protein MGL_2759 [Malassezia globosa CBS 7966]
Length = 229
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 66/99 (66%), Gaps = 15/99 (15%)
Query: 14 PNNTIYINNLNEKVK---------------IDQLKQSLHAVFKQFGTILEILAFKTLKHK 58
PN ++Y+ N+N KVK + +L++ L+++F +G +L+++A + +
Sbjct: 6 PNTSLYVKNINSKVKKPGMYRSAIESGTLTLAELRRQLYSLFGSYGKVLDVVATRADGMR 65
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKS 97
GQA++VF+D+ SATAA+ + GF FY+KP++++YA+T+S
Sbjct: 66 GQAFVVFRDLQSATAALRALDGFEFYEKPLKLEYARTRS 104
>gi|19112363|ref|NP_595571.1| U2 snRNP-associated protein Msl1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|52783379|sp|Q7LL14.1|RU2B_SCHPO RecName: Full=Probable U2 small nuclear ribonucleoprotein B'';
Short=U2 snRNP B''
gi|2950496|emb|CAA17824.1| U2 snRNP-associated protein Msl1 (predicted) [Schizosaccharomyces
pombe]
Length = 111
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 64/87 (73%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
NT+Y+NNLN+K+ + L+ +L+ +F +GT+++I+A KT K +GQA +VF D ++A A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAK 102
+ ++ F F+ K M+IQYA +KS II +
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIER 90
>gi|425868425|gb|AFY04342.1| sans fille, partial [Cochliomyia macellaria]
Length = 113
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 21/134 (15%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE 118
GQA+++FK++ASA+ A+ MQGFPFYDKPMRI YAKT SD+ AK GTF +ER K+ +
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVXAKMKGTF--KERPKKLKP 58
Query: 119 KGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQN 178
+ ++ N A A P + PPN ILF+ N
Sbjct: 59 PKPVQPVXDKKDKKKKASN-----AENANPNT--------------QTEQPPNQILFLTN 99
Query: 179 VPHDTTPMALQMFF 192
+P +T M L M F
Sbjct: 100 LPEETNEMMLSMLF 113
>gi|425868405|gb|AFY04333.1| sans fille, partial [Episyrphus balteatus]
Length = 112
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 26/136 (19%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE 118
G A ++FK+++SA+ A+ MQGFPFYDKPMRI Y+KT SD++AK GTF +ER K+ +
Sbjct: 1 GXALVIFKEISSASNALRXMQGFPFYDKPMRIAYSKTDSDVVAKIKGTF--KERPKKVKP 58
Query: 119 KGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA--PPNNILFV 176
++ + GGA++ + A PPN ILF+
Sbjct: 59 PKXPATEEKKDKKKKT----------------------GGAENAASNSTAEQPPNQILFL 96
Query: 177 QNVPHDTTPMALQMFF 192
N+P +T M L M F
Sbjct: 97 TNLPEETXXMMLPMLF 112
>gi|259016059|gb|ACV89311.1| sans fille [Nannochorista sp. BMW-2009]
Length = 61
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK+++SAT A+ MQGFPFYDKPMRIQY KT SDIIAK GTF ER K+
Sbjct: 2 KMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYCKTDSDIIAKMKGTF--SERPKK 59
Query: 116 HE 117
H+
Sbjct: 60 HK 61
>gi|302406697|ref|XP_003001184.1| U1 small nuclear ribonucleoprotein A [Verticillium albo-atrum
VaMs.102]
gi|261359691|gb|EEY22119.1| U1 small nuclear ribonucleoprotein A [Verticillium albo-atrum
VaMs.102]
Length = 92
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 57/78 (73%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+ NL E+VKID LK+SL +F ++G +LEI+A LK KGQA++VF D SA A++
Sbjct: 9 TVYVRNLEERVKIDVLKESLLQIFSEYGNVLEIIAKTNLKSKGQAFIVFDDADSAQNAID 68
Query: 77 KMQGFPFYDKPMRIQYAK 94
++QGF +DK ++++ +
Sbjct: 69 EVQGFELFDKQCKLRWLR 86
>gi|425868414|gb|AFY04337.1| sans fille, partial [Drosophila melanogaster]
Length = 116
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 25/139 (17%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ SA+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK GTF R ++ +
Sbjct: 1 KMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVK 60
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA--PPNNI 173
+ A G + P A++ P A PPN I
Sbjct: 61 PPKP-----------------------APGTDEKKDKKKKPSSAENSNPNAQTEQPPNQI 97
Query: 174 LFVQNVPHDTTPMALQMFF 192
LF+ N+P +T M L M F
Sbjct: 98 LFLTNLPEETNEMMLSMLF 116
>gi|238598482|ref|XP_002394620.1| hypothetical protein MPER_05461 [Moniliophthora perniciosa FA553]
gi|215463934|gb|EEB95550.1| hypothetical protein MPER_05461 [Moniliophthora perniciosa FA553]
Length = 191
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PNNT+Y+NNLN+KV ++ + I+A K K +GQA+LVF D+A ATA
Sbjct: 7 PNNTLYVNNLNDKVNKEEYALNSSPSSPPMAE-YHIVASKNPKMRGQAFLVFTDLAGATA 65
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIA-KADGTFVP 109
A+ +G FYDKPMRI YAKTKS + + D FVP
Sbjct: 66 ALRACEGMLFYDKPMRIDYAKTKSYATSRREDANFVP 102
>gi|213407830|ref|XP_002174686.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
gi|212002733|gb|EEB08393.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 63/91 (69%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
++T+Y+NNLNEK++ + L+ SL+ +F +GT+L+++A KT K +GQA +VF D +A A
Sbjct: 3 SHTLYVNNLNEKLRKEDLRTSLYLLFSTYGTVLDVVALKTPKMRGQAHIVFHDQTAAAIA 62
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADG 105
+ + F F+ K M I+YAK++S + + G
Sbjct: 63 KKTLTNFMFFGKEMHIEYAKSRSHALERVYG 93
>gi|351712556|gb|EHB15475.1| U2 small nuclear ribonucleoprotein B'' [Heterocephalus glaber]
Length = 143
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 84/159 (52%), Gaps = 17/159 (10%)
Query: 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGAT 147
MRIQYAKT SDII+K GTF +E++K ++ + AN+ G + G
Sbjct: 1 MRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKP-GQGTSTTDTQGNA 59
Query: 148 PPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
P Q+P PP ILF+ N+P +T + M F+QFPGFKE+ +V +
Sbjct: 60 TPNPQVP------------DYPPKYILFLNNLPEETNEV---MLFNQFPGFKEIHLVPGR 104
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 105 HDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 143
>gi|403223443|dbj|BAM41574.1| U1 snRNP protein [Theileria orientalis strain Shintoku]
Length = 418
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+YI NLN++V ++ +L +F + +L+++ K+ +GQAW++F + +
Sbjct: 107 SIEPNQTLYIRNLNDRVNTKVMENALRELFSAY-PLLDVILMKSFWRRGQAWVIFSTIEN 165
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A A+ + GF Y M I YA KS +++K +GT+VP +R+ + + R+ +
Sbjct: 166 AAKAMFEFNGFLLYGHAMHINYALEKSYLVSKMNGTYVPSDRKGVKMKPRRIRQRELLYY 225
Query: 131 QAGMGLNPAYAGAYGATP 148
Q+ + P G P
Sbjct: 226 QSNPAMAPPSVNPMGMMP 243
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230
N LFV+N+P + T + + F++ PGF E R++ + +AF+++ + ++ A+Q S
Sbjct: 349 NKTLFVENLPENVTNLDVVNVFNKMPGFVEARVIIPR-RVAFIDFDSDNSSSYALQGCTS 407
>gi|2257544|dbj|BAA21437.1| spliceosomal protein [Schizosaccharomyces pombe]
Length = 216
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 64/87 (73%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
NT+Y+NNLN+K+ + L+ +L+ +F +GT+++I+A KT K +GQA +VF D ++A A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAK 102
+ ++ F F+ K M+IQYA +KS II +
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIER 90
>gi|50551429|ref|XP_503188.1| YALI0D23375p [Yarrowia lipolytica]
gi|49649056|emb|CAG81388.1| YALI0D23375p [Yarrowia lipolytica CLIB122]
Length = 146
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 64/102 (62%)
Query: 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFK 66
G+E +P+ T+Y+ NL +K LK+ L+ F +G IL+I+A K + +GQA +VF
Sbjct: 22 TDGDEPTPSPTLYVKNLTDKCTKSDLKRYLYMRFSSYGHILDIVAMKNERMRGQAHVVFN 81
Query: 67 DVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
D+ ++ +A+ +Q F K M I+YA++KS IAK DG+F
Sbjct: 82 DIDASISALNGLQKSEFMGKEMVIEYARSKSHAIAKLDGSFT 123
>gi|425868427|gb|AFY04343.1| sans fille, partial [Delia radicum]
Length = 114
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 21/135 (15%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
+GQA+++FK++ASA A+ MQGFPFYDKPMRI Y+KT SD++AK GTF +ER K+ +
Sbjct: 1 RGQAFVIFKEIASAANALRTMQGFPFYDKPMRIAYSKTDSDVVAKIKGTF--KERPKKLK 58
Query: 118 EKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQ 177
+ ++ N A A P + PPN ILF+
Sbjct: 59 PPKPVAPVEDKKDKKKKTSN-----AENANPNT--------------QTEQPPNQILFLT 99
Query: 178 NVPHDTTPMALQMFF 192
N+P +T M L M F
Sbjct: 100 NLPEETNEMMLPMLF 114
>gi|425868418|gb|AFY04339.1| sans fille, partial [Minettia flaveola]
Length = 112
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 21/131 (16%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
+GQA++VFK+++SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GTF +ER K+ +
Sbjct: 2 RGQAFVVFKEISSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKIKGTF--KERPKKVK 59
Query: 118 EKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQ 177
+ ++ N A P SQ PPN ILF+
Sbjct: 60 PPKAPLNVEEKKDKKKKTTNAENAN------PNSQ-------------TEQPPNQILFLT 100
Query: 178 NVPHDTTPMAL 188
N+P +T M L
Sbjct: 101 NLPEETNEMML 111
>gi|425868431|gb|AFY04345.1| sans fille, partial [Musca domestica]
Length = 115
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 21/136 (15%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ASA+ A+ MQGFPFYDKPMRI YAKT SD++AK GTF +ER K+
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKMKGTF--KERPKK 58
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+ + ++ N A + P ++ PPN ILF
Sbjct: 59 VKPPKPAAPAEDKKDKKKKTTN-----AENSNPN--------------AQSEQPPNQILF 99
Query: 176 VQNVPHDTTPMALQMF 191
+ N +T M L +
Sbjct: 100 LTNATEETNEMMLSLL 115
>gi|425868387|gb|AFY04324.1| sans fille, partial [Sylvicola fenestralis]
Length = 107
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 30/132 (22%)
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH----- 116
+++FK++AS+T A+ MQGFPFYDKPMRI Y K SD+IAK GT+ R ++ +
Sbjct: 1 FVIFKEIASSTNALRTMQGFPFYDKPMRIAYCKGDSDVIAKLKGTYKERPKKSKPPKPVA 60
Query: 117 EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFV 176
E K++K +H+AN GAT + A PPN ILF+
Sbjct: 61 SEDKKEKKRKHNAN-----------AELGATNNST--------------AEQPPNQILFL 95
Query: 177 QNVPHDTTPMAL 188
N+P +T M L
Sbjct: 96 TNLPEETNEMML 107
>gi|388580808|gb|EIM21120.1| hypothetical protein WALSEDRAFT_69274 [Wallemia sebi CBS 633.66]
Length = 150
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 76/130 (58%), Gaps = 7/130 (5%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PN T+Y+ NL +K+ +L+ L+ F+ +G IL+++A KT K +GQAW+VF ++SAT+
Sbjct: 4 PNTTLYLRNLPDKINKQELRSQLYFRFQSYGRILDVVALKTDKLRGQAWIVFDVLSSATS 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS----DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A+ G FY+K + I YAKT S I ++ F + + + G +R +A
Sbjct: 64 AMRAENGSRFYNKAINIDYAKTTSKAYQQYIGNSESLFSDAQ---KAAQGGIQRMVVSNA 120
Query: 130 NQAGMGLNPA 139
++A +GL A
Sbjct: 121 SEASLGLKRA 130
>gi|300175345|emb|CBK20656.2| unnamed protein product [Blastocystis hominis]
Length = 83
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 57/78 (73%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
++ P T+YINNLN+++ +QL++SL+ +F QFG +L+++A KT + +GQAW+ F +
Sbjct: 4 QLVPIPTLYINNLNDRLPKEQLRRSLYMLFSQFGIVLDVVALKTERMRGQAWVSFLTPQN 63
Query: 71 ATAAVEKMQGFPFYDKPM 88
AT A+ +QGF FY KPM
Sbjct: 64 ATDAMNSLQGFDFYGKPM 81
>gi|157836397|pdb|2U1A|A Chain A, Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20
Structures
Length = 88
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE+ +E+QA
Sbjct: 6 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 65
Query: 224 AMQSLQSLKIGQQQLL-ITYAKK 245
A +LQ KI Q + I++AKK
Sbjct: 66 ARDALQGFKITQNNAMKISFAKK 88
>gi|425868420|gb|AFY04340.1| sans fille, partial [Thaumatomyia notata]
Length = 112
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 22/134 (16%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE 118
GQA+++FK++ SA+ A+ MQGFPFYDKPMRI YAK++SD++AK GT+ + ++ + +
Sbjct: 1 GQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYAKSESDVVAKIKGTYKEKPKKVKPPK 60
Query: 119 KGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQN 178
+ + + + N T P +Q + PPN ILF+ N
Sbjct: 61 PVQVEEKKDKKKKTTNAEN---------TNPNTQ-------------SEQPPNQILFLTN 98
Query: 179 VPHDTTPMALQMFF 192
+P +T M L M F
Sbjct: 99 LPEETNEMMLSMLF 112
>gi|301761836|ref|XP_002916340.1| PREDICTED: LOW QUALITY PROTEIN: u2 small nuclear
ribonucleoprotein B''-like [Ailuropoda melanoleuca]
Length = 163
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 61/81 (75%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I P++ I NN+N+K+K ++L+ SL A+F QFG +++I+A K + +GQ +++ K++AS
Sbjct: 2 DIRPSHIIDTNNMNDKIKKEELESSLXALFSQFGHVVDIVALKAMNMRGQDFVIVKELAS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQ 91
T+A ++QGFPFY K M+IQ
Sbjct: 62 PTSAFRQLQGFPFYGKXMQIQ 82
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
ILF+ + + M M F+QFPGFKEV +V + IAF+E+ ++ QA VA +LQ K
Sbjct: 86 ILFLISFSEEINEMMXSMLFNQFPGFKEVLLVPXRHDIAFMEFENDEQAGVAXDALQEFK 145
Query: 233 IG-QQQLLITYAKK 245
I + I+YAKK
Sbjct: 146 ITPXNAMKISYAKK 159
>gi|209878378|ref|XP_002140630.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556236|gb|EEA06281.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 304
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+PN T+Y+NNLN++V +L+++L F FG I+ I K+ +GQAW+ FKD+ +A+
Sbjct: 16 TPNCTLYVNNLNDRVPTTELEKNLLQKFGNFGEIVNITCMKSFYRRGQAWITFKDIETAS 75
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER 112
A+ +QG ++KP+R +A T S G+ VP +R
Sbjct: 76 KALTAIQGVNMFNKPIRAAFAHTTS------YGSSVPAKR 109
>gi|403357542|gb|EJY78399.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
Length = 322
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT---LKHKGQAWLVFKDVASATA 73
T+Y+ NLN+K+K D++K +L +F Q G ++EI T K +GQA++VF++ A
Sbjct: 106 TLYVRNLNDKIKTDEMKITLFHLFSQVGEVIEINMRNTNNSQKLRGQAFIVFREQDMADR 165
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
+++++GF + K + IQYAK SD+ K G F R R + KRK + + +
Sbjct: 166 GLQELKGFNLFGKSIDIQYAKQNSDVTLKNKGVFDDSIRLNRRQ----KRKQKDELKRKE 221
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
A Q+ Y E +N + + N+P + + LQ
Sbjct: 222 KKEKLVIAEQQLK----QQLNYK--------EMALKQSNAIAIDNLPGNYNQLLLQELLR 269
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLITYA 243
+PG + + + + +A V + A VA+ L +I + QL +T+
Sbjct: 270 NYPGVADYNL-DVEKHVATVHFHTSNDAKVALAGLNQYQIDSEGTQLRVTFV 320
>gi|403344910|gb|EJY71809.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
gi|403363680|gb|EJY81589.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
Length = 322
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT---LKHKGQAWLVFKDVASATA 73
T+Y+ NLN+K+K D++K +L +F Q G ++EI T K +GQA++VF++ A
Sbjct: 106 TLYVRNLNDKIKTDEMKITLFHLFSQVGEVIEINMRNTNNSQKLRGQAFIVFREQDMADR 165
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
+++++GF + K + IQYAK SD+ K G F R R + KRK + + +
Sbjct: 166 GLQELKGFNLFGKSIDIQYAKQNSDVTLKNKGVFDDSIRLNRRQ----KRKQKDELKRKE 221
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
A Q+ Y E +N + + N+P + + LQ
Sbjct: 222 KKEKLVIAEQQLK----QQLNYK--------EMALKQSNAIAIDNLPGNYNQLLLQELLR 269
Query: 194 QFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ--QLLITYA 243
+PG + + + + +A V + A VA+ L +I + QL +T+
Sbjct: 270 NYPGVADYNL-DVEKHVATVHFHTSNDAKVALAGLNQYQIDSEGTQLRVTFV 320
>gi|449513275|ref|XP_004175808.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like, partial
[Taeniopygia guttata]
Length = 99
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ +E QA A +L
Sbjct: 22 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRQDIAFVEFENENQAGAARDAL 81
Query: 229 QSLKIGQQQLL-ITYAKK 245
Q KI + ITYAKK
Sbjct: 82 QGFKIPPSHAMKITYAKK 99
>gi|149597291|ref|XP_001509496.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like
[Ornithorhynchus anatinus]
Length = 139
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 145 GATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMV 204
GA PP + G P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 40 GAMPPQQMMA--GQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 97
Query: 205 EAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 98 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 139
>gi|122919626|pdb|2B0G|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
gi|134103993|pdb|2AYM|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
Length = 83
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++L
Sbjct: 6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEAL 65
Query: 229 QSLKIGQQQLL-ITYAKK 245
Q KI + IT+AKK
Sbjct: 66 QGFKITPTHAMKITFAKK 83
>gi|148696477|gb|EDL28424.1| mCG19497, isoform CRA_a [Mus musculus]
Length = 132
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 158 GAKSVIPEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216
G + P+ P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+
Sbjct: 43 GTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 102
Query: 217 DEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
++ QA A +LQ KI + ITYAKK
Sbjct: 103 NDGQAGAARDALQGFKITPSHAMKITYAKK 132
>gi|840823|emb|CAA44752.1| U2-snRNP-specific b'' [Mus musculus]
Length = 123
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 158 GAKSVIPEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216
G + P+ P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+
Sbjct: 34 GTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 93
Query: 217 DEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
++ QA A +LQ KI + ITYAKK
Sbjct: 94 NDGQAGAARDALQGFKITPSHAMKITYAKK 123
>gi|70914065|ref|XP_731718.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56501874|emb|CAH85078.1| hypothetical protein PC301396.00.0 [Plasmodium chabaudi chabaudi]
Length = 90
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 61/86 (70%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+YINNL +K+ ++ LK L+ F +G +L+++ K+ K +GQA+++F ++AS
Sbjct: 5 DIPPNQTLYINNLEDKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIAS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTK 96
+T A + ++G PF +K + I YAKTK
Sbjct: 65 STLAYKNLKGKPFLNKNININYAKTK 90
>gi|149041255|gb|EDL95188.1| rCG27500, isoform CRA_a [Rattus norvegicus]
Length = 132
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ ++ QA A +L
Sbjct: 55 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 114
Query: 229 QSLKIGQQQLL-ITYAKK 245
Q KI + ITYAKK
Sbjct: 115 QGFKITPSHAMKITYAKK 132
>gi|355721048|gb|AES07135.1| small nuclear ribonucleoprotein polypeptide B [Mustela putorius
furo]
Length = 99
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 158 GAKSVIPEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216
G + P+ P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+
Sbjct: 10 GNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 69
Query: 217 DEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
++ QA A +LQ KI + ITYAKK
Sbjct: 70 NDGQAGAARDALQGFKITPSHAMKITYAKK 99
>gi|425868433|gb|AFY04346.1| sans fille, partial [Neobellieria bullata]
Length = 109
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 21/128 (16%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ASA+ A+ MQGFPFYDKPMRI Y+KT SD++AK GTF +ER K+
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYSKTDSDVVAKMKGTF--KERPKK 58
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+ + ++ N A A P + PPN ILF
Sbjct: 59 QKPPKPVAPVEEKKDKKKKASN-----AENANPNT--------------QTEQPPNQILF 99
Query: 176 VQNVPHDT 183
+ N+P +T
Sbjct: 100 LTNLPEET 107
>gi|70991385|ref|XP_750541.1| U1 small nuclear ribonucleoprotein A [Aspergillus fumigatus Af293]
gi|66848174|gb|EAL88503.1| U1 small nuclear ribonucleoprotein A, putative [Aspergillus
fumigatus Af293]
gi|159124097|gb|EDP49215.1| U1 small nuclear ribonucleoprotein A, putative [Aspergillus
fumigatus A1163]
Length = 294
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 19/109 (17%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+Y NL +K++ L+ SL+ +F +GT+L+++A KT K +GQA +VFKDV ++T A+
Sbjct: 107 LYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQAMRA 166
Query: 78 MQGFPFYDKPM-------------------RIQYAKTKSDIIAKADGTF 107
+QGF F+ K M +I YAK SD+IA+ GT+
Sbjct: 167 LQGFEFFGKEMVSHFFFNGLATALNTVNFQKIVYAKGTSDVIARLRGTY 215
>gi|297716585|ref|XP_002834591.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like, partial
[Pongo abelii]
Length = 99
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 158 GAKSVIPEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216
G + P+ P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+
Sbjct: 10 GNSTPNPQIPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 69
Query: 217 DEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
++ QA A +LQ KI + ITYAKK
Sbjct: 70 NDGQAGAARDALQGFKITPSHAMKITYAKK 99
>gi|440793172|gb|ELR14364.1| SNF, putative [Acanthamoeba castellanii str. Neff]
Length = 65
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 52/59 (88%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
E+ PN T+Y+NNLNEKVK D+L+++L+ +F Q+GT+L+I+A K+LK +GQA+++F+D+A
Sbjct: 4 EVPPNETLYVNNLNEKVKRDELRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDIA 62
>gi|425868401|gb|AFY04331.1| sans fille, partial [Hermetia illucens]
Length = 116
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 21/137 (15%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA+++FK++ASA+ A+ MQGFPFYDKPMRI YAKT SD++A+ GT+ R ++ +
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTYKERPKKIK 60
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+ + + +A + A A + PP N ILF
Sbjct: 61 PPKPAPSEEKKEKKKKAANNADSASANSTVEQPP---------------------NQILF 99
Query: 176 VQNVPHDTTPMALQMFF 192
+ N+P +T M L M F
Sbjct: 100 LTNLPEETNEMMLSMLF 116
>gi|342879725|gb|EGU80962.1| hypothetical protein FOXB_08521 [Fusarium oxysporum Fo5176]
Length = 197
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 64/97 (65%), Gaps = 7/97 (7%)
Query: 12 ISPNNTIYINNL-NEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
I PN T+Y+ NL + K++ L+ +L+ +F +G +L+++A KT+K +GQA +VF+DV S
Sbjct: 24 IPPNQTLYVTNLPSSKIQKADLRTALYLLFSTYGPVLDVVALKTMKMRGQAHIVFRDVQS 83
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
AT A+ ++G F + + +KS+ +AK DGTF
Sbjct: 84 ATQAMRSLEGQAFLGRDL------SKSNFVAKLDGTF 114
>gi|840821|emb|CAA44751.1| U2-snRNP-specific b'' [Mus musculus]
Length = 97
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 158 GAKSVIPEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216
G + P+ P PPN ILF+ N+P +T M L M +QFPGFKEVR+V + IAFVE+
Sbjct: 8 GTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLLNQFPGFKEVRLVPGRHDIAFVEFE 67
Query: 217 DEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
++ QA A +LQ KI + ITYAKK
Sbjct: 68 NDGQAGAARDALQGFKITPSHAMKITYAKK 97
>gi|259016049|gb|ACV89307.1| sans fille [Ctenocephalides felis]
Length = 82
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 51/128 (39%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE 118
GQA+++FK++ASA+ A+ MQGFPFYDKPMRI YAKT SD++A+ GT+ +E
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTY---------KE 51
Query: 119 KGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQN 178
+ KK K+Q PPN ILF+ N
Sbjct: 52 RPKKIKEQ------------------------------------------PPNQILFLTN 69
Query: 179 VPHDTTPM 186
+P +T M
Sbjct: 70 LPEETNEM 77
>gi|428171194|gb|EKX40113.1| hypothetical protein GUITHDRAFT_113851 [Guillardia theta CCMP2712]
Length = 336
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 20/118 (16%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
+++ P NT+YI NL E+VK ++++ L+AVF Q+G IL++ A KT K +GQA++ F ++
Sbjct: 80 DQLPPCNTLYIRNLRERVKPRRMRELLYAVFSQYGKILDVRALKTQKMRGQAFVCFDELK 139
Query: 70 S--------------------ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+ A A E++ GF F ++ + IQ+AK+ S K DGT+
Sbjct: 140 AREQLEHVQGQSMLTPCACQDAVHAKEELNGFSFLNRTLVIQFAKSPSHAHLKKDGTY 197
>gi|340503108|gb|EGR29728.1| u1 small nuclear ribonucleoprotein a, putative [Ichthyophthirius
multifiliis]
Length = 149
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 54/77 (70%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
PNNT+Y+NNLNE VKI++L L +F++FG +++I A + +K +GQA++ F+D+ +A
Sbjct: 24 PNNTLYVNNLNENVKINELIPELKRIFEEFGDVIQIKAKRNIKMRGQAFITFQDIPTAEK 83
Query: 74 AVEKMQGFPFYDKPMRI 90
A+E QG Y K M +
Sbjct: 84 ALENCQGRKLYGKQMEL 100
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 200 EVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
EVR+V K +AFVEY DE +A VA+QSL + KIG + + YAK
Sbjct: 105 EVRLVPQKK-VAFVEYEDEFKAGVALQSLSTFKIGDNIVTVNYAK 148
>gi|395818968|ref|XP_003782878.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Otolemur garnettii]
Length = 200
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 44/238 (18%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I PN+ IYI ++ V + K+ H +F QFG +++ + KT++ GQ ++VFK + S+
Sbjct: 3 IRPNHAIYIYYVDGXVNKEGCKKFPHTLFSQFGYMVDTVVLKTVRMTGQTFVVFKKLGSS 62
Query: 72 TAAVEKMQGF-PFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+ A+ ++Q F ++ + KT S + K GTF +E+ K
Sbjct: 63 SNALRQLQDFLSLVNQCTPVW--KTDS-YVTKTCGTFAGKEKNKMKT------------- 106
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA--PPNNILFVQNVPHDTTPMAL 188
+ QI K P+ + PPN ILF N+ +T M
Sbjct: 107 -------------------VEQIAATANRKPSKPDGVSDYPPNYILFFINLLAETNEM-- 145
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+ F FK+V +V + GIAF E ++ A A ++LQ KI + IT A K
Sbjct: 146 -MLFNPFTSFKKVCLVPGRHGIAFAE--NDKXAGAAREALQGFKITLSHAMKITCANK 200
>gi|344257423|gb|EGW13527.1| U2 small nuclear ribonucleoprotein B'' [Cricetulus griseus]
Length = 113
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 138 PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPG 197
P A G T P Q+P PPN ILF+ N+P +T M L M F+QFPG
Sbjct: 17 PNLANTQGNTAPNPQVP------------DYPPNYILFLNNLPEETNEMMLSMLFNQFPG 64
Query: 198 FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
FKEV ++ + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 65 FKEVCLIPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 113
>gi|425868374|gb|AFY04319.1| sans fille, partial [Arachnocampa flava]
Length = 116
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 21/137 (15%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K +GQA++ FK++ASA+ A+ MQGFPFYDKPMRI YAKT SD++A+ GT+ R ++ +
Sbjct: 1 KMRGQAFVXFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTYKERPKKIK 60
Query: 116 HEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
+ + + +A + A A + PP N ILF
Sbjct: 61 PPKPAPSEEKKEKKKKAANNADSASANSTVEQPP---------------------NQILF 99
Query: 176 VQNVPHDTTPMALQMFF 192
+ N+P +T M L M F
Sbjct: 100 LTNLPEETNEMMLSMLF 116
>gi|425868376|gb|AFY04320.1| sans fille, partial [Bibio longipes]
Length = 96
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+GQA+++FK+++SAT A+ MQGFPFYDKPMRI Y+K SD+IAK GTF
Sbjct: 2 RGQAFVIFKEISSATNALRTMQGFPFYDKPMRISYSKCDSDVIAKIKGTF 51
>gi|443925378|gb|ELU44231.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 154
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 56/80 (70%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
G + + T+YI NLNEKVKI+Q+K +L ++FK +G IL+++A L+ +GQA++ F+
Sbjct: 47 GLPVGASETLYIQNLNEKVKIEQMKSTLRSLFKGYGKILDVVAHGNLRMRGQAFVSFESK 106
Query: 69 ASATAAVEKMQGFPFYDKPM 88
A A+++++ FP Y KPM
Sbjct: 107 EVAAKALKEVKNFPLYAKPM 126
>gi|407923615|gb|EKG16684.1| hypothetical protein MPH_06138 [Macrophomina phaseolina MS6]
Length = 117
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 157 GGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216
GGA +VIP+ PPN ILFVQN+P AL F +F GFKEVR+V + GIAFVEY
Sbjct: 27 GGAAAVIPDEYLPPNKILFVQNLPDGYDVEALSAIFGRFEGFKEVRLVPGRSGIAFVEYE 86
Query: 217 DEMQATVAMQSLQSLKIGQQQ--LLITYAKK 245
E A A ++ + +G + + +TY ++
Sbjct: 87 AEAGAISAKEATAGMALGDEGKPMKVTYQRQ 117
>gi|425868403|gb|AFY04332.1| sans fille, partial [Acrosathe novella]
Length = 114
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 44/52 (84%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
K +GQA+++FK+++SA+ A+ MQGFPFYDKPMRI YAK+ SD+IA+ GT+
Sbjct: 1 KMRGQAFVIFKEISSASNALRTMQGFPFYDKPMRIAYAKSDSDMIARMKGTY 52
>gi|425868382|gb|AFY04323.1| sans fille, partial [Edwardsina gigantea]
Length = 90
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 56 KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRK 114
K +G A ++FK++ASA+ A+ MQGFPFYDKPMRI YAKT SD++A+ GT + +R+K
Sbjct: 1 KMRGXAXVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTXIRADRKK 59
>gi|366988781|ref|XP_003674158.1| hypothetical protein NCAS_0A12190 [Naumovozyma castellii CBS 4309]
gi|342300021|emb|CCC67777.1| hypothetical protein NCAS_0A12190 [Naumovozyma castellii CBS 4309]
Length = 113
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I P NT+Y+NNL+EK+ +L+ +L +F +G +L++ A K +GQA++ + V A
Sbjct: 26 IDPKNTLYVNNLDEKINTKRLRTNLFLLFSIYGEVLKV-AISAKKQRGQAFITMRTVDEA 84
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDII 100
A+ + PF+DKP+ IQ++KT S II
Sbjct: 85 NLALISLNNEPFFDKPLHIQFSKTNSYII 113
>gi|344250483|gb|EGW06587.1| U1 small nuclear ribonucleoprotein A [Cricetulus griseus]
Length = 104
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
PPN+ILF+ N+P +T + L M F+Q PGFKEV +V + IAFVE+ +E+QA A +L
Sbjct: 27 PPNHILFLTNLPEETNKLMLSMLFNQCPGFKEVHLVPGQHDIAFVEFDNEVQAGAAPDAL 86
Query: 229 QSLKIGQQQLL-ITYAKK 245
Q KI Q + I++AKK
Sbjct: 87 QGFKITQNNAMKISFAKK 104
>gi|296423050|ref|XP_002841069.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637301|emb|CAZ85260.1| unnamed protein product [Tuber melanosporum]
Length = 164
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGAT 147
M + +AK++SD K + E + E ++R + + QA L + A
Sbjct: 1 MVLAFAKSRSDATVKREAG----EDSQEFEAHKRRRLAERERKQALAALESQRHASTTAA 56
Query: 148 PPLSQ---IPYPGGAKSV-------IPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPG 197
P + GG KS IP+ PPN+ LF+QN+P +T L F +F G
Sbjct: 57 PQVDSAKATKKSGGLKSTAPAAAPQIPDEYLPPNSTLFLQNLPDETDSDTLTSLFGRFDG 116
Query: 198 FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
FKEVRMV + GIAFVE+ A A + + + +G + + +TY ++
Sbjct: 117 FKEVRMVPGRKGIAFVEFEQLEGAIGAKEGIGGMTLGDKVVKVTYQRQ 164
>gi|148693401|gb|EDL25348.1| mCG126247 [Mus musculus]
Length = 65
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 53/61 (86%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K + QA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKMKKEELKRSLYALFSQFGHVVDIVALKTMKMRAQAFVIFKELCS 61
Query: 71 A 71
+
Sbjct: 62 S 62
>gi|425868397|gb|AFY04329.1| sans fille, partial [Ogcodes basalis]
Length = 88
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 45/55 (81%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
G+ +++FK+++SA+ A+ MQGFPFYDKP+RI YAKT+SDI+A+ GTF R +R
Sbjct: 1 GRRFVIFKEISSASNALRTMQGFPFYDKPLRIAYAKTESDIVARMKGTFKERPKR 55
>gi|413956010|gb|AFW88659.1| hypothetical protein ZEAMMB73_209786 [Zea mays]
Length = 61
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244
M LQ+ F Q+PGF+EVRM+EAKPGIAFVE+ D+ Q+ VAMQ+LQ KI + + I+YAK
Sbjct: 1 MMLQILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAK 60
Query: 245 K 245
K
Sbjct: 61 K 61
>gi|294655304|ref|XP_457426.2| DEHA2B10868p [Debaryomyces hansenii CBS767]
gi|199429852|emb|CAG85430.2| DEHA2B10868p [Debaryomyces hansenii CBS767]
Length = 116
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 58/85 (68%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+NNLN+K++ LK +L+ F +G I++I+ K +GQA ++F +V AT A++
Sbjct: 24 TLYVNNLNDKIQSATLKHNLYVYFSTYGDIIDIVMKAQGKMRGQAHIIFANVMHATNAMK 83
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIA 101
+QG PF++K + I+Y+ KS II+
Sbjct: 84 SLQGKPFFEKDLHIEYSLKKSKIIS 108
>gi|443898291|dbj|GAC75628.1| spliceosomal protein snRNP-U1A/U2B [Pseudozyma antarctica T-34]
Length = 344
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 52/250 (20%)
Query: 6 ANQGN-----EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
AN GN + +P+ T+Y+ N+ K+K +L++ L+++F +G +L+++A + +GQ
Sbjct: 114 ANGGNGATSSKAAPSPTLYVKNIEGKIKKPELRRQLYSLFSAYGRVLDVVATRAPGMRGQ 173
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQY---AKTKS--------DIIAKAD----G 105
A++VF++ ++TAA + F FY K + I Y AK+++ D + + D
Sbjct: 174 AFVVFENPTTSTAAKRALHSFVFYGKELHIDYATGAKSRAILRREIGHDAVHEMDLERSK 233
Query: 106 TFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE 165
T V R KR E D+ DA + L A
Sbjct: 234 TTVSRRGEKRTVESKPDSDDEEDAGRKRAKLEDA-------------------------- 267
Query: 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG--IAFVEYGDEMQATV 223
++ +VP LQ F++ G+ EV + E K G A VE+ D +A
Sbjct: 268 ----DEKVVKALDVPEAIEVGVLQALFARQEGYVEVTVSEQKAGTWTAKVEFEDAQKARA 323
Query: 224 AMQSLQSLKI 233
A +L ++++
Sbjct: 324 AKDALNNIQL 333
>gi|238488098|ref|XP_002375287.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|220700166|gb|EED56505.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
Length = 147
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 50/69 (72%)
Query: 39 VFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD 98
+F +GT+L+++A KT + +GQA +VFKDV ++T A+ +QGF F+ K ++I YAK SD
Sbjct: 2 LFSTYGTVLDVVAMKTKRMRGQAHIVFKDVQASTQAMRALQGFEFFGKQLKIVYAKGTSD 61
Query: 99 IIAKADGTF 107
+IAK G +
Sbjct: 62 VIAKLRGAY 70
>gi|425868399|gb|AFY04330.1| sans fille, partial [Exeretonevra angustifrons]
Length = 93
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 43/55 (78%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
G+ +L+FK++ SA+ A+ MQGFPFYDKPMRI Y+KT SDIIA+ GTF R ++
Sbjct: 1 GRRFLIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIIARMKGTFKERPKK 55
>gi|425868407|gb|AFY04334.1| sans fille, partial [Lonchoptera uniseta]
Length = 91
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
GQA+++FK+ SA+ A MQGFPFYDKPMRI Y+KT SDI+AK GTF R ++
Sbjct: 1 GQAFVIFKEXXSASNARRTMQGFPFYDKPMRIAYSKTDSDIVAKIKGTFKERPKK 55
>gi|190345684|gb|EDK37611.2| hypothetical protein PGUG_01709 [Meyerozyma guilliermondii ATCC
6260]
Length = 141
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I P+ T+Y+NNLN++V LK +L+ +F +G +++I+ K +GQA ++ + V SA
Sbjct: 21 IRPSQTLYVNNLNDQVSRRLLKHNLYLLFSTYGDVIDIIIRP--KMRGQAHIILESVTSA 78
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
++A + F+ K M + YAKTKS I+A+A+
Sbjct: 79 SSAKAGLDKRRFFSKEMSVNYAKTKSRIVARAE 111
>gi|432117207|gb|ELK37643.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 133
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+ P+ T+YINNLNEK++ ++LK+SL+ +F QFG IL IL+ ++LK + Q K A+
Sbjct: 36 QTCPSLTVYINNLNEKIRKNELKKSLYTLFSQFGQILNILS-QSLKMRAQHLSSSKRTAA 94
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
+ PF + YA T SDIIA+ GTFV
Sbjct: 95 PGPCAPCRR--PFLQQTHAPPYANTDSDIIAEMKGTFV 130
>gi|357461607|ref|XP_003601085.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355490133|gb|AES71336.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
Length = 151
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 41/54 (75%)
Query: 57 HKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+K + F +V +A+ AV +MQ FPFY KPMRIQYAKTKSD +AK +G+FVPR
Sbjct: 67 YKCFTMVCFSEVTAASNAVRQMQNFPFYVKPMRIQYAKTKSDCVAKEEGSFVPR 120
>gi|259016061|gb|ACV89312.1| sans fille [Panorpa sp. BMW-2009]
Length = 52
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
+FK++ S+T A+ MQGFPFYDKPMRIQY+KT SD+IAK GTF R ++++
Sbjct: 1 IFKEIPSSTNALRSMQGFPFYDKPMRIQYSKTDSDVIAKMKGTFQERPKKQK 52
>gi|425868395|gb|AFY04328.1| sans fille, partial [Oreogeton scopifer]
Length = 83
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+L+FK+++SA+ A+ MQGFPFYDKPMRI YAKT SD++AK GTF
Sbjct: 1 FLIFKEISSASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKIKGTF 46
>gi|50304193|ref|XP_452046.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641178|emb|CAH02439.1| KLLA0B11594p [Kluyveromyces lactis]
Length = 114
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
EI PNNT+Y+ NLN+++KI +++SL+ +F +G ++++ T K +GQA++ FK V
Sbjct: 27 EIEPNNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVSM--TPKQRGQAFITFKSVDE 84
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAK 94
A A+ ++ F++KP+ +Q++K
Sbjct: 85 ANLALLSLKDELFFNKPLVLQFSK 108
>gi|343426466|emb|CBQ69996.1| related to U2 small nuclear ribonucleoprotein B [Sporisorium
reilianum SRZ2]
Length = 237
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P+ T+YI N+ K+K +L+ LHA+F +G IL+++A + +GQA++VF+ A
Sbjct: 17 APSPTLYIKNIEGKIKKPELRAQLHALFTTYGRILDVVATRAPHMRGQAFVVFESAGVAA 76
Query: 73 AAVEKMQGFPFYDKPMRIQYA 93
+A + GF FY +P+ I Y+
Sbjct: 77 SAKRALDGFAFYGRPLHIAYS 97
>gi|331218892|ref|XP_003322123.1| hypothetical protein PGTG_03660 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301113|gb|EFP77704.1| hypothetical protein PGTG_03660 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ T+YI NL++KVK LK+ L+ +F G +L+++ K K +GQA++VF+D AT
Sbjct: 13 PSPTLYIQNLDDKVKKSDLKRLLYQLFLIHGKVLDVVV-KKGKMRGQAFVVFRDFQGATQ 71
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS 97
A+ ++ G F D+ ++I YAKT+S
Sbjct: 72 AMRQLDGTGFLDRELKITYAKTQS 95
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
PN +LF++ +P + T + + F Q+PGF+ VR+V + GIAFV+Y Q+ +A +L
Sbjct: 234 PNPVLFLEGLPAEVTDDMMAVLFQQYPGFQSVRLVPGRTGIAFVQYDTAAQSDMAKAALD 293
Query: 230 SLKI 233
K+
Sbjct: 294 GFKL 297
>gi|405118309|gb|AFR93083.1| hypothetical protein CNAG_06716 [Cryptococcus neoformans var.
grubii H99]
Length = 262
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P+ T+Y++ L K K +L+Q L+A+F +G +++++A K +GQA++VF++ +AT
Sbjct: 6 TPSPTLYVSGLETKTKKPELRQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAAT 65
Query: 73 AAVEKMQGFPFYDKPM-RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ 131
AA+ + G FY+K + RI YAK S RE K + Q + Q
Sbjct: 66 AALRGLTGETFYNKELQRISYAKKPSYATTARQDPSASREAAAIQAAKLTVSRAQDEYEQ 125
Query: 132 AGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN-----------ILFVQNVP 180
+ AG G L GAK V E +L N+P
Sbjct: 126 LEKERHDEEAGLLGEKRGLEDEQEERGAKRVKQEDDEAMEIEMDEEEDEEKPVLICSNLP 185
Query: 181 HDTTPMALQMFFSQFPGF 198
+ + FSQ+ GF
Sbjct: 186 AECNADIMGALFSQYQGF 203
>gi|344301982|gb|EGW32287.1| hypothetical protein SPAPADRAFT_153008 [Spathaspora passalidarum
NRRL Y-27907]
Length = 135
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ +YI NLN+K+ LK +L+ +F FG ++EI KG A ++F D+ SA
Sbjct: 27 LKPSQCLYIKNLNDKINRQLLKHNLYLLFSTFGDVIEIRI-----RKGFAHVLFGDIPSA 81
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG 105
T A+ +Q F+DKP+ I Y+ +S +I + G
Sbjct: 82 TVALRSLQSEEFFDKPLVINYSVNESKVITRLSG 115
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 170 PNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM 225
P+ L+++N+ L+ + FS F E+R+ + G A V +GD ATVA+
Sbjct: 29 PSQCLYIKNLNDKINRQLLKHNLYLLFSTFGDVIEIRI---RKGFAHVLFGDIPSATVAL 85
Query: 226 QSLQSLKIGQQQLLITYA 243
+SLQS + + L+I Y+
Sbjct: 86 RSLQSEEFFDKPLVINYS 103
>gi|146420161|ref|XP_001486038.1| hypothetical protein PGUG_01709 [Meyerozyma guilliermondii ATCC
6260]
Length = 141
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I P+ T+Y+NNLN++V LK +L+ +F +G +++I+ K +GQA ++ + V SA
Sbjct: 21 IRPSQTLYVNNLNDQVLRRLLKHNLYLLFSTYGDVIDIIIRP--KMRGQAHIILESVTSA 78
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
+A + F+ K M + YAKTKS I+A+A+
Sbjct: 79 LSAKAGLDKRRFFSKEMSVNYAKTKSRIVARAE 111
>gi|380746076|gb|AFE47971.1| sans fille, partial [Drosophila fulvimaculoides]
gi|380746148|gb|AFE48007.1| sans fille, partial [Drosophila fulvimacula flavorepleta]
Length = 99
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ K+R
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY-------------KER 47
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
+ + GL + + P + PPN ILF+ N+P +T
Sbjct: 48 PKKVKPPKPAAGLEEKKDKKKKQSSAENSNPN--------SQTEQPPNQILFLTNLPEET 99
>gi|401882121|gb|EJT46394.1| hypothetical protein A1Q1_05041 [Trichosporon asahii var. asahii
CBS 2479]
Length = 192
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P+ T+++ NL K K +L+Q L+A+F +G +++I+A K +GQA++VF++ A+AT
Sbjct: 5 TPSPTLFVGNLETKTKKPELRQQLYALFTPYGRVIDIVAKKHDGGRGQAFIVFEEQAAAT 64
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKAD 104
AA+ + FY++ M I YAK S+ +A+ D
Sbjct: 65 AALRGLNDTQFYNRDMHIAYAKNPSNATLARED 97
>gi|255717014|ref|XP_002554788.1| KLTH0F13816p [Lachancea thermotolerans]
gi|238936171|emb|CAR24351.1| KLTH0F13816p [Lachancea thermotolerans CBS 6340]
Length = 124
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
ISP T+Y+NNLN+K+K+ L+++L+ +F +G +L+I + K++GQA++V + A
Sbjct: 31 ISPKKTLYVNNLNDKIKVQTLRENLYLLFSTYGEVLQINV--SNKNRGQAFIVLRTPDEA 88
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIA 101
A+ +Q F++K + IQ+++ S ++A
Sbjct: 89 NVAMISLQKETFFEKELHIQFSRQDSKLVA 118
>gi|380746070|gb|AFE47968.1| sans fille, partial [Drosophila acanthoptera]
Length = 99
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 25/122 (20%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPP------ 54
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPH 181
A GA + A++ P + PPN ILF+ N+P
Sbjct: 55 -----------------KPALGAEEKKDKKKKQSSAENSNPNTQTEQPPNQILFLTNLPE 97
Query: 182 DT 183
+T
Sbjct: 98 ET 99
>gi|40950461|gb|AAR97864.1| sans fille [Drosophila parisiena]
gi|40950463|gb|AAR97865.1| sans fille [Drosophila parisiena]
gi|40950469|gb|AAR97868.1| sans fille [Drosophila huaylasi]
Length = 98
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+++FK++ SA+ A+ MQGFPFYDKPMRI Y+KT SDI+AK GT+ R
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIVAKLKGTYKER 49
>gi|363748204|ref|XP_003644320.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887952|gb|AET37503.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
Length = 113
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+Y++NLN+++K++ LK +L+ +F FG +L+I + K +GQA++ K V A
Sbjct: 29 PRSTLYVSNLNDQIKLEALKSNLYLIFSTFGEVLKISM--SAKLRGQAFVTLKTVDEANL 86
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS 97
A+ ++ PF+ KP++IQ++K+++
Sbjct: 87 AMISLRDEPFFGKPLKIQFSKSET 110
>gi|380746136|gb|AFE48001.1| sans fille, partial [Drosophila navojoa]
Length = 99
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 25/122 (20%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ K+R
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY-------------KER 47
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP--EAPAPPNNILFVQNVPH 181
+ + G+ T A++ P + PPN ILF+ N+P
Sbjct: 48 PKKVKPPKPVPGVEEKKDKKKKQT----------SAENANPNTQTEQPPNQILFLTNLPE 97
Query: 182 DT 183
+T
Sbjct: 98 ET 99
>gi|425868389|gb|AFY04325.1| sans fille, partial [Tipula abdominalis]
Length = 88
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 38/45 (84%)
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+FK++ASA A++ MQGFPFYDKP+RIQY+K+ SD+IAK GTF
Sbjct: 2 WIFKEIASAXNALKTMQGFPFYDKPLRIQYSKSDSDVIAKIKGTF 46
>gi|380746106|gb|AFE47986.1| sans fille, partial [Drosophila nigrospiracula]
Length = 99
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 35/127 (27%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH------- 116
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGI 60
Query: 117 EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFV 176
EEK K+K Q A A NP + PPN ILF+
Sbjct: 61 EEKKDKKKKQSSAENA----NPNT------------------------QTEQPPNQILFL 92
Query: 177 QNVPHDT 183
N+P +T
Sbjct: 93 TNLPEET 99
>gi|380746078|gb|AFE47972.1| sans fille, partial [Drosophila hamatofila]
gi|380746080|gb|AFE47973.1| sans fille, partial [Drosophila hexastigma]
gi|380746084|gb|AFE47975.1| sans fille, partial [Drosophila koepferae]
gi|380746098|gb|AFE47982.1| sans fille, partial [Drosophila mulleri]
gi|380746104|gb|AFE47985.1| sans fille, partial [Drosophila nigrodumosa]
gi|380746108|gb|AFE47987.1| sans fille, partial [Drosophila parisiena]
gi|380746120|gb|AFE47993.1| sans fille, partial [Drosophila straubae]
gi|380746124|gb|AFE47995.1| sans fille, partial [Drosophila wheeleri]
gi|380746144|gb|AFE48005.1| sans fille, partial [Drosophila meridiana]
gi|380746156|gb|AFE48011.1| sans fille, partial [Drosophila arizonae]
gi|380746162|gb|AFE48014.1| sans fille, partial [Drosophila meridiana rioensis]
gi|380746166|gb|AFE48016.1| sans fille, partial [Drosophila mojavensis baja]
gi|380746168|gb|AFE48017.1| sans fille, partial [Drosophila martensis]
gi|380746172|gb|AFE48019.1| sans fille, partial [Drosophila huaylasi]
gi|380746174|gb|AFE48020.1| sans fille, partial [Drosophila meridionalis]
gi|380746182|gb|AFE48024.1| sans fille, partial [Drosophila spenceri]
gi|380746186|gb|AFE48026.1| sans fille, partial [Drosophila huichole]
Length = 99
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 35/127 (27%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH------- 116
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 117 EEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFV 176
EEK K+K Q A A NP + PPN ILF+
Sbjct: 61 EEKKDKKKKQSSAENA----NPNT------------------------QTEQPPNQILFL 92
Query: 177 QNVPHDT 183
N+P +T
Sbjct: 93 TNLPEET 99
>gi|40950383|gb|AAR97825.1| sans fille [Drosophila mojavensis]
gi|40950385|gb|AAR97826.1| sans fille [Drosophila mojavensis]
gi|40950387|gb|AAR97827.1| sans fille [Drosophila mojavensis]
gi|40950389|gb|AAR97828.1| sans fille [Drosophila mojavensis]
gi|40950391|gb|AAR97829.1| sans fille [Drosophila mojavensis]
gi|40950393|gb|AAR97830.1| sans fille [Drosophila mojavensis]
gi|40950395|gb|AAR97831.1| sans fille [Drosophila mojavensis]
gi|40950397|gb|AAR97832.1| sans fille [Drosophila mojavensis]
gi|40950399|gb|AAR97833.1| sans fille [Drosophila mojavensis]
gi|40950401|gb|AAR97834.1| sans fille [Drosophila mojavensis]
gi|40950403|gb|AAR97835.1| sans fille [Drosophila mojavensis]
gi|40950405|gb|AAR97836.1| sans fille [Drosophila mojavensis]
gi|40950407|gb|AAR97837.1| sans fille [Drosophila mojavensis]
gi|40950409|gb|AAR97838.1| sans fille [Drosophila mojavensis]
gi|40950411|gb|AAR97839.1| sans fille [Drosophila mojavensis]
gi|40950413|gb|AAR97840.1| sans fille [Drosophila mojavensis]
gi|40950415|gb|AAR97841.1| sans fille [Drosophila mojavensis]
gi|40950417|gb|AAR97842.1| sans fille [Drosophila mojavensis]
gi|40950419|gb|AAR97843.1| sans fille [Drosophila mojavensis]
gi|40950421|gb|AAR97844.1| sans fille [Drosophila mojavensis]
gi|40950423|gb|AAR97845.1| sans fille [Drosophila mojavensis]
gi|40950425|gb|AAR97846.1| sans fille [Drosophila mojavensis]
gi|40950427|gb|AAR97847.1| sans fille [Drosophila mojavensis]
gi|40950429|gb|AAR97848.1| sans fille [Drosophila mojavensis]
gi|40950431|gb|AAR97849.1| sans fille [Drosophila mojavensis]
gi|40950433|gb|AAR97850.1| sans fille [Drosophila mojavensis]
gi|40950449|gb|AAR97858.1| sans fille [Drosophila arizonae]
gi|40950453|gb|AAR97860.1| sans fille [Drosophila arizonae]
gi|40950455|gb|AAR97861.1| sans fille [Drosophila arizonae]
gi|40950457|gb|AAR97862.1| sans fille [Drosophila mulleri]
gi|40950459|gb|AAR97863.1| sans fille [Drosophila mulleri]
gi|40950465|gb|AAR97866.1| sans fille [Drosophila straubae]
gi|40950467|gb|AAR97867.1| sans fille [Drosophila mayaguana]
Length = 98
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+++FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 49
>gi|380746072|gb|AFE47969.1| sans fille, partial [Drosophila anceps]
gi|380746082|gb|AFE47974.1| sans fille, partial [Drosophila hydei]
gi|380746092|gb|AFE47979.1| sans fille, partial [Drosophila mettleri]
gi|380746094|gb|AFE47980.1| sans fille, partial [Drosophila micromettleri]
gi|380746100|gb|AFE47983.1| sans fille, partial [Drosophila neorepleta]
gi|380746110|gb|AFE47988.1| sans fille, partial [Drosophila peninsularis]
gi|380746130|gb|AFE47998.1| sans fille, partial [Drosophila pavani]
gi|380746158|gb|AFE48012.1| sans fille, partial [Drosophila limensis]
gi|380746164|gb|AFE48015.1| sans fille, partial [Drosophila eohydei]
gi|380746170|gb|AFE48018.1| sans fille, partial [Drosophila canapalpa]
Length = 99
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ K+R
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY-------------KER 47
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
+ + G+ + + P + PPN ILF+ N+P +T
Sbjct: 48 PKKVKPPKPVPGVEEKKDKKKKQSSAENSNPN--------TQTEQPPNQILFLTNLPEET 99
>gi|40950435|gb|AAR97851.1| sans fille [Drosophila navojoa]
gi|40950437|gb|AAR97852.1| sans fille [Drosophila navojoa]
gi|40950439|gb|AAR97853.1| sans fille [Drosophila navojoa]
gi|40950441|gb|AAR97854.1| sans fille [Drosophila navojoa]
gi|40950443|gb|AAR97855.1| sans fille [Drosophila navojoa]
gi|40950445|gb|AAR97856.1| sans fille [Drosophila navojoa]
Length = 98
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+++FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 49
>gi|431891771|gb|ELK02305.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 105
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 25 EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83
K+K D+LK+SL+A+F QFG IL+IL ++LK GQA+ FK+V++ T A+ +QGFPF
Sbjct: 47 RKIKKDELKKSLYAIFSQFGQILDILVSRSLKMSGQAFAAFKEVSNTTNALHSLQGFPF 105
>gi|388856009|emb|CCF50386.1| related to U2 small nuclear ribonucleoprotein B [Ustilago hordei]
Length = 249
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 73/122 (59%), Gaps = 8/122 (6%)
Query: 13 SPNNTIYINNLNEKVKI-DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+P+ T+Y+ N+ KVK +L++ LH++F +G +L+++A + +GQA++VF++ + +
Sbjct: 20 APSPTLYVKNIEGKVKKPAELRRQLHSLFSTYGRVLDVVATRAHGMRGQAFIVFENPSFS 79
Query: 72 TAAVEKMQGFPFYDKPMRIQYAK-TKSDIIAKADGTFVP------RERRKRHEEKGKKRK 124
TAA + F FY KP+ I+Y+ +KS + + + + + R ++G+KR
Sbjct: 80 TAAKRGLHNFSFYSKPLHIEYSSGSKSKALLRKELGYEAVQELDLEKSRTTESKRGEKRA 139
Query: 125 DQ 126
+Q
Sbjct: 140 NQ 141
>gi|425868429|gb|AFY04344.1| sans fille, partial [Glossina morsitans]
Length = 87
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 39/50 (78%)
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K++ASA+ A+ MQGFPFYDKPMRI YAKT SD++AK GTF R ++ R
Sbjct: 1 KEIASASNALRTMQGFPFYDKPMRIAYAKTDSDMVAKIKGTFKERPKKVR 50
>gi|425868437|gb|AFY04348.1| sans fille, partial [Chamaepsila hennigi]
Length = 96
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
+GQA+ F+++ SA+ A+ MQGFPFYDKPMRI Y+K+ SD AK GTF R ++
Sbjct: 1 RGQAFRHFQEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDXXAKIKGTFKERPKK 56
>gi|40950451|gb|AAR97859.1| sans fille [Drosophila arizonae]
Length = 97
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
++FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 VIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 48
>gi|45184845|ref|NP_982563.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|44980454|gb|AAS50387.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|374105762|gb|AEY94673.1| FAAR022Wp [Ashbya gossypii FDAG1]
Length = 114
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+YI+NLN++VKI L+ +L+ +F FG +L I + K +GQA++V V A
Sbjct: 30 PRSTLYISNLNDQVKISTLRTNLYLLFSTFGEVLRIAM--SPKLRGQAFVVLSTVDEANL 87
Query: 74 AVEKMQGFPFYDKPMRIQYAKT 95
A+ ++ F+ KP+RIQ++K+
Sbjct: 88 AMISLKDESFFGKPLRIQFSKS 109
>gi|380746142|gb|AFE48004.1| sans fille, partial [Drosophila ellisoni]
Length = 99
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 21/120 (17%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K SDI+AK GT+ K+R
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKCDSDIVAKLKGTY-------------KER 47
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
+ + G+ + + P + PPN ILF+ N+P +T
Sbjct: 48 PKKVKPPKPVPGVEEKKDKKKKQSSTENANPN--------TQTEQPPNQILFLTNLPEET 99
>gi|123430856|ref|XP_001307983.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889640|gb|EAX95053.1| hypothetical protein TVAG_428560 [Trichomonas vaginalis G3]
Length = 186
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
I+P+ T+++ NL +K+ ID LK++L+ +F ++EI A K + +GQAW+ F ++ SA
Sbjct: 5 IAPSQTLFVRNLTDKIPIDDLKRNLYYLFSSVAPVVEINARKG-QSRGQAWVSFPNLESA 63
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE 111
+++ FPF K ++I+Y+K S + + F R+
Sbjct: 64 EIIMKQFNNFPFLGKALQIEYSKNPSKSLEEFYNAFSTRQ 103
>gi|380746074|gb|AFE47970.1| sans fille, partial [Drosophila buzzatii]
gi|380746118|gb|AFE47992.1| sans fille, partial [Drosophila starmeri]
gi|380746126|gb|AFE47996.1| sans fille, partial [Drosophila moju]
gi|380746160|gb|AFE48013.1| sans fille, partial [Drosophila venezolana]
Length = 93
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 47
>gi|380746154|gb|AFE48010.1| sans fille, partial [Drosophila borborema]
Length = 93
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 47
>gi|380746138|gb|AFE48002.1| sans fille, partial [Drosophila aldrichi]
Length = 93
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 47
>gi|380746116|gb|AFE47991.1| sans fille, partial [Drosophila sonorae]
Length = 99
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|119568195|gb|EAW47810.1| hCG22524, isoform CRA_a [Homo sapiens]
Length = 91
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+ L+A+F QFG +++ +A KT+K +G+A ++ A
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRCLYALFSQFGHVVDFVALKTMKMRGRALSYLRNWAH 61
Query: 71 ATAAVEKMQGFPF 83
+ + F F
Sbjct: 62 PQMLRDSHKDFHF 74
>gi|380746140|gb|AFE48003.1| sans fille, partial [Drosophila virilis]
Length = 99
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|380746146|gb|AFE48006.1| sans fille, partial [Drosophila mercatorum pararepleta]
gi|380746150|gb|AFE48008.1| sans fille, partial [Drosophila mercatorum]
Length = 99
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|380746102|gb|AFE47984.1| sans fille, partial [Drosophila nigricruria]
Length = 93
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 36/47 (76%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K SDI+AK GT+ R
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKADSDIVAKLKGTYKER 47
>gi|380746188|gb|AFE48027.1| sans fille, partial [Drosophila pegasa]
Length = 89
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|380746152|gb|AFE48009.1| sans fille, partial [Drosophila fulvimacula]
Length = 87
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 FKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 46
>gi|380746128|gb|AFE47997.1| sans fille, partial [Drosophila canalinea]
Length = 91
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|380746132|gb|AFE47999.1| sans fille, partial [Drosophila aracataca]
Length = 75
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 64 VFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|425868422|gb|AFY04341.1| sans fille, partial [Phytomyza ilicicola]
Length = 84
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 2/50 (4%)
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
K++ASA+ A+ MQGFPFYDKPMRI YAK SD++AK GTF +ER K+
Sbjct: 1 KEIASASTALRTMQGFPFYDKPMRIAYAKGDSDVVAKIKGTF--KERPKK 48
>gi|426198267|gb|EKV48193.1| hypothetical protein AGABI2DRAFT_56767, partial [Agaricus
bisporus var. bisporus H97]
Length = 76
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 56/75 (74%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ T+Y+NNLN+ V ++L+ L+A+F G I++I+A KT K +GQA+LVF D+A+ATA
Sbjct: 1 PSPTLYLNNLNDHVNKEELRTQLYALFTTHGKIIDIVASKTQKMRGQAFLVFADLAAATA 60
Query: 74 AVEKMQGFPFYDKPM 88
A+ +G FYDKP+
Sbjct: 61 AMRACEGMIFYDKPL 75
>gi|209878161|ref|XP_002140522.1| RNA recognition motif. family protein [Cryptosporidium muris
RN66]
gi|209556128|gb|EEA06173.1| RNA recognition motif. family protein [Cryptosporidium muris
RN66]
Length = 103
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 8 QGNEIS-PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFK 66
GNE + N T+Y NLN+KV L+ L+ +F Q+GTIL+I+ ++GQA+++F
Sbjct: 7 SGNEDTFVNKTLYCKNLNDKVNKKDLRVILYELFIQYGTILKIIVKGGCNNRGQAFVLFD 66
Query: 67 DVASATAAVEKMQGFPFYDKPMRIQYAKTKSDI 99
++ SA A+ + G KP+ I+YAK S +
Sbjct: 67 NLNSAIEALNNVNGRVILGKPIVIEYAKKDSKV 99
>gi|380746178|gb|AFE48022.1| sans fille, partial [Drosophila paranaensis]
Length = 84
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 35/43 (81%)
Query: 65 FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
FK++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+
Sbjct: 1 FKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 43
>gi|150863925|ref|XP_001382572.2| hypothetical protein PICST_35154 [Scheffersomyces stipitis CBS
6054]
gi|149385181|gb|ABN64543.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 124
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ T+YI NLN+K+ +K +L+ +F +G I++I K +GQA ++F +VA A
Sbjct: 28 LKPSQTLYIKNLNDKINPKIIKHNLYLLFSTYGDIIDIKNNK----RGQAHIIFTNVAGA 83
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKA 103
+ A++ +Q F+DK + I YA +S I+ +A
Sbjct: 84 SLALKCLQDEEFFDKKLVINYAIKESKIVERA 115
>gi|156057559|ref|XP_001594703.1| hypothetical protein SS1G_04511 [Sclerotinia sclerotiorum 1980]
gi|154702296|gb|EDO02035.1| hypothetical protein SS1G_04511 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 144
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+GQA +V++D+ +AT A+ +QGF F + M+IQYAK+KSD IAK DGTF
Sbjct: 2 RGQAHIVYRDIQTATQAMRALQGFEFLGREMKIQYAKSKSDTIAKLDGTF 51
>gi|396465284|ref|XP_003837250.1| hypothetical protein LEMA_P034840.1 [Leptosphaeria maculans JN3]
gi|312213808|emb|CBX93810.1| hypothetical protein LEMA_P034840.1 [Leptosphaeria maculans JN3]
Length = 184
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 78 MQGFPFYDKPMRIQYAKTKSD-IIAKADGTFVPRERRKRHEEKGKKRKDQHDANQ-AGMG 135
M GF Y K M++ AKT SD + + +RKR KG H
Sbjct: 1 MNGFEMYGKVMKVTRAKTHSDETVKRKAAELFDEHKRKRLMLKGGLLPFSHPPQLLTSAH 60
Query: 136 LNPAYA---------GAYGATPPLSQIPYPGGAKS---VIPEAPAPPNNILFVQNVPHDT 183
NP A A P P AK+ +P+ PN LF+QN+P D
Sbjct: 61 TNPCLAPTDFKRAEEDAKAQANPTVAAEKPRTAKTGAAAVPDEYVRPNKTLFLQNIPRDV 120
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLIT 241
L F +F GFKEVR+V + +AF E+ +E A A ++ + IG + + +T
Sbjct: 121 DEETLTNVFERFEGFKEVRLVSVR-SVAFAEFENEQFAITAKEATANTPIGAEGKPMKVT 179
Query: 242 YAKK 245
Y ++
Sbjct: 180 YQRQ 183
>gi|392576387|gb|EIW69518.1| hypothetical protein TREMEDRAFT_24129, partial [Tremella
mesenterica DSM 1558]
Length = 76
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 51/75 (68%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ T++I NL K K +L+ L+A+F FG +++++A K +GQA++VF++ A+ATA
Sbjct: 1 PSPTLFITNLETKTKKIELRSQLYALFTPFGKVIDVVAKKHGGGRGQAFVVFEEQAAATA 60
Query: 74 AVEKMQGFPFYDKPM 88
A+ + G PFY K +
Sbjct: 61 ALRGLHGEPFYSKEL 75
>gi|448104887|ref|XP_004200362.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|448108043|ref|XP_004200993.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|359381784|emb|CCE80621.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|359382549|emb|CCE79856.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
Length = 123
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASA 71
P T+Y NLN+KV D +K +L+ +F +G +++I+ FK + +GQA ++F + A
Sbjct: 30 PKETLYAKNLNDKVNPDTMKHNLYLLFSTYGDVIDIV-FKPKNKRLRGQAHIIFSSASHA 88
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
A++++Q F++K +++ YAK +S + + D
Sbjct: 89 ARALDELQHVSFFEKQLQMSYAKKRSKVFVEQD 121
>gi|154323986|ref|XP_001561307.1| hypothetical protein BC1G_00392 [Botryotinia fuckeliana B05.10]
Length = 142
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+GQA +V++D+ +AT A+ +QGF F + M IQYAK+KSD IAK DGTF
Sbjct: 2 RGQAHVVYRDIQTATQAMRALQGFEFLGREMNIQYAKSKSDTIAKLDGTF 51
>gi|340052814|emb|CCC47100.1| putative U2 small nuclear ribonucleoprotein B [Trypanosoma vivax
Y486]
Length = 114
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+YI L +KV ++++++L+ QFG +L++L + + GQA++VF DVA+AT
Sbjct: 4 PKQTLYIRGLPDKVSTEEMRRALYLYCTQFGPVLDVLYRNSSRLYGQAFVVFTDVATATN 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS 97
A ++ FY + ++ YAK +S
Sbjct: 64 ARRELHERCFYGRTVQAFYAKRQS 87
>gi|406603930|emb|CCH44563.1| U1 small nuclear ribonucleoprotein [Wickerhamomyces ciferrii]
Length = 112
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T++I+NLN+ + D LK +L+ +F FG +LEI K +GQA++VF D SA A+
Sbjct: 22 TLHISNLNDNIHYDTLKHNLYILFTTFGDVLEINIPGNNKLRGQAFIVFTDPKSANIAMR 81
Query: 77 KMQGFPFYDKPMRIQYAKTKSDII 100
+QG F+ K ++ ++ +S ++
Sbjct: 82 SLQGDEFFGKKLKFDFSHEESKVL 105
>gi|126649301|ref|XP_001388322.1| U1 snrnp [Cryptosporidium parvum Iowa II]
gi|32398796|emb|CAD98506.1| U1 snrnp, possible [Cryptosporidium parvum]
gi|126117416|gb|EAZ51516.1| U1 snrnp, putative [Cryptosporidium parvum Iowa II]
Length = 267
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N TIYINNLN+ + I + K SL +F ++G I I F + KGQAW+ F + SA A
Sbjct: 25 NKTIYINNLNDSISIPKQKLSLEEIFAKYGKIESIKMFNSYFRKGQAWITFSNAVSAVNA 84
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSD 98
V G + K + + +A +S+
Sbjct: 85 VNNEIGTQIFGKHVNVSFAAKESE 108
>gi|449267533|gb|EMC78469.1| Regulator of differentiation 1, partial [Columba livia]
Length = 499
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 29/248 (11%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
I ++N++ + ++ L H + FG +L I+ F T K QA + + SA A +
Sbjct: 139 IIVDNVSHHISLEML----HEILSPFGPVLRIIIF-TKYGKFQALAEYDNPRSAYCAKKT 193
Query: 78 M--QGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
+ QG D +R+ Y+K S I + R G+ DQ A G+
Sbjct: 194 LNGQGIFTSDCFIRVDYSKFTSLAIKYNNEKSRDFTRLDLPSGDGQIYMDQPIAAAYGIQ 253
Query: 136 LN--PAYAGAYGATPPLSQIPYPGGAKSVIPEAP------APP----------NNILFVQ 177
N P+Y GA G TP +S + GA S++P P APP N++L V
Sbjct: 254 NNIVPSYTGAAGFTPNMS---FSQGAGSLVPPLPTAVRSLAPPGQRTYPDFSENSVLLVS 310
Query: 178 NV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236
N+ P+ TP L + F + V+++ A V+ D QA +A+ L K+ +
Sbjct: 311 NLNPNAVTPYGLFILFGIYGNVHRVKIMFRTKEKALVQMADANQARLAISYLNGQKLYGR 370
Query: 237 QLLITYAK 244
L T++K
Sbjct: 371 VLHATFSK 378
>gi|323509337|dbj|BAJ77561.1| cgd6_2150 [Cryptosporidium parvum]
Length = 297
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N TIYINNLN+ + I + K SL +F ++G I I F + KGQAW+ F + SA A
Sbjct: 25 NKTIYINNLNDSISIPKQKLSLEEIFAKYGKIESIKMFNSYFRKGQAWITFSNAVSAVNA 84
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSD 98
V G + K + + +A +S+
Sbjct: 85 VNNEIGTQIFGKHVNVSFAAKESE 108
>gi|348550212|ref|XP_003460926.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2
[Cavia porcellus]
Length = 531
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 20/241 (8%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T + QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNSQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 292
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIP-----YPGGAKSVIPEAPAPPNNILFVQNV-PHDT 183
A GL + +GA PL+ IP + IP N++L V N+ P
Sbjct: 293 MAAAFGL--SVPNVHGALAPLA-IPSAAAAAAAAGRIGIPGLAGAGNSVLLVSNLNPERV 349
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243
TP +L + F + + V+++ K A V+ D QA +AM L K+ + + IT +
Sbjct: 350 TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPIRITLS 409
Query: 244 K 244
K
Sbjct: 410 K 410
>gi|348522752|ref|XP_003448888.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Oreochromis
niloticus]
Length = 654
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 56/264 (21%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+ + NL V +D L Q +F +FGT+L I+ F T ++ QA L + D ASA AA
Sbjct: 289 VVVENLIYPVTLDALCQ----IFSKFGTVLRIIIF-TKNNQFQALLQYSDGASAQAAKLS 343
Query: 78 MQGFPFYD--KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK--KRKD-------- 125
+ G Y+ +RI ++K S + K + EK + R D
Sbjct: 344 LDGQNIYNGCCTLRISFSKLTSLNV-------------KYNNEKSRDFTRPDLPTGDGQP 390
Query: 126 --QHDANQ---AGMGLNPA--YAGAYGATPP-----------------LSQIPYPGGAKS 161
+H A A G+ A YAGA A PP L+ + PG +
Sbjct: 391 TMEHTAMATAFAAPGIISAAPYAGATHAFPPAFTLQPAGLAVPALPGALASLSLPGATRL 450
Query: 162 VIPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQ 220
P PA +++L V N+ P TP L + F + V+++ K A V+ D Q
Sbjct: 451 GFPPIPAG-HSVLLVSNLNPERVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQ 509
Query: 221 ATVAMQSLQSLKIGQQQLLITYAK 244
A +AM L ++ + + IT +K
Sbjct: 510 AQLAMSHLNGQRLHGKPVRITLSK 533
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASATA 73
++ + ++NLN + + + H +F FG +++ K L +K + LV D A
Sbjct: 459 HSVLLVSNLNPE------RVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQL 512
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ + G + KP+RI +K S +PRE HE++G
Sbjct: 513 AMSHLNGQRLHGKPVRITLSKHTS--------VQLPREG---HEDQG------------- 548
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF- 192
L Y+ + PL + PG PP+ L + N+P L+M F
Sbjct: 549 --LTKDYSNS-----PLHRFKKPGSKNY---SNIFPPSATLHLSNIPPSVVEDDLKMLFA 598
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAKK 245
S K + + +A ++ G +A ++ + +G+ L ++++K
Sbjct: 599 SSGAVVKAFKFFQKDHKMALIQVGSVEEAIESLIEFHNHDLGENHHLRVSFSKS 652
>gi|67539218|ref|XP_663383.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4]
gi|40743682|gb|EAA62872.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4]
Length = 127
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 58 KGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFV 108
+GQA +VFKD+ ++T A+ +QGF F+ KPM+I YAK SD+IA+ GT+V
Sbjct: 2 RGQAHVVFKDIQASTQAMRALQGFEFFGKPMKIVYAKGSSDVIARLRGTYV 52
>gi|380746086|gb|AFE47976.1| sans fille, partial [Drosophila leonis]
Length = 86
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 67 DVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
++ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 EIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 44
>gi|224087659|ref|XP_002196400.1| PREDICTED: polypyrimidine tract-binding protein 1 [Taeniopygia
guttata]
Length = 525
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 46/266 (17%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T H+ QA L + D SA
Sbjct: 151 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNHQFQALLQYADPMSAQ 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 206 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPTLDQT 262
Query: 130 NQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP--------------- 170
A G ++P YAGA PP IP G +P P
Sbjct: 263 MAAAFGAPGIISPPYAGA--GFPPTFAIPQATGL--TVPSVPGALAPLAIPAAAAAAAAG 318
Query: 171 -----------NNILFVQN-VPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE 218
+++L V N +P TP L + F + + V+++ K A V+ D
Sbjct: 319 RIAIPGLSGTGHSVLLVSNLIPERVTPQCLFILFGVYGDVQRVKILFNKKDNALVQMADG 378
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 379 NQAQLAMSHLNGQKLHGKPIRITLSK 404
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 37/210 (17%)
Query: 38 AVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASATAAVEKMQGFPFYDKPMRIQYAKTK 96
+F FG ++ K L +K LV D A A+ + G + KP+RI +K +
Sbjct: 347 CLFILFGVYGDVQRVKILFNKKDNALVQMADGNQAQLAMSHLNGQKLHGKPIRITLSKHQ 406
Query: 97 SDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYP 156
+ +PRE ++ H GL Y T PL + P
Sbjct: 407 T--------VQLPRENQEDH------------------GLTKDYG-----TSPLHRFKKP 435
Query: 157 GGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAKPGIAFVEY 215
G + PP+ L + N+P T L++ FS G K + + +A ++
Sbjct: 436 GSKNF---QNIFPPSATLHLSNIPPSVTEEDLKLLFSSNGGMVKGFKFFQKDRKMALIQM 492
Query: 216 GDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
G +A ++ L + +G+ L ++++K
Sbjct: 493 GSVEEAIQSLIDLHNHDLGENHHLRVSFSK 522
>gi|71416262|ref|XP_810168.1| U2 small nuclear ribonucleoprotein B [Trypanosoma cruzi strain CL
Brener]
gi|71662225|ref|XP_818122.1| U2 small nuclear ribonucleoprotein B [Trypanosoma cruzi strain CL
Brener]
gi|70874662|gb|EAN88317.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
cruzi]
gi|70883355|gb|EAN96271.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
cruzi]
Length = 114
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+YI L +KV +++++L+ QFG +LE+ K+ GQA++VF DVA+AT+
Sbjct: 4 PKQTLYIRGLPDKVSEKEMRRALYLYCTQFGPVLEVSYRKSRDMYGQAFVVFSDVATATS 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS 97
A ++ FY + ++ YAK +S
Sbjct: 64 ARRELNERQFYGRLVQAFYAKRQS 87
>gi|58331982|ref|NP_001011140.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|54261503|gb|AAH84469.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|89272472|emb|CAJ82472.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
Length = 554
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 103/255 (40%), Gaps = 28/255 (10%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L+Q +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 184 SPVLRIIVENLFYPVTLDVLQQ----IFSKFGTVLKIITF-TKNNQFQALLQYGDPVSAQ 238
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R G+ DQ A
Sbjct: 239 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDGQPSLDQTIAA 298
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP--------------------YPGGAKSVIPEAPAPP 170
GL A A PP IP + IP P
Sbjct: 299 FGAPGLISANPYASAGFPPAFAIPQGVHGTLAPLALPSAAAAAAAAAAGRLGIPGLGIPG 358
Query: 171 NNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
N++L V N+ P TP L + F + V+++ K A V+ D QA +AM L
Sbjct: 359 NSVLLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALVQMADGNQAQLAMSHLN 418
Query: 230 SLKIGQQQLLITYAK 244
++ + L IT +K
Sbjct: 419 GQRLHGKPLRITVSK 433
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 47/241 (19%)
Query: 9 GNEISPNNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FK 66
G I N+ + ++NLN E+V Q L +F +G + + K L +K + LV
Sbjct: 353 GLGIPGNSVLLVSNLNPERVT----PQCLFILFGVYGDVHRV---KILFNKKENALVQMA 405
Query: 67 DVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQ 126
D A A+ + G + KP+RI +K ++ +PRE ++DQ
Sbjct: 406 DGNQAQLAMSHLNGQRLHGKPLRITVSKHQT--------VQLPRE----------GQEDQ 447
Query: 127 HDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPM 186
GL Y+ T PL + PG + PP+ L + N+P +
Sbjct: 448 --------GLTKDYS-----TSPLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEE 491
Query: 187 ALQMFFSQFPGF--KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYA 243
L+M FS G+ K + + +A ++ G +A ++ L + +G+ L ++++
Sbjct: 492 DLKMLFSN-NGYTVKGFKFFQKDRKMALIQMGSVEEAIESLIELHNHDMGENHHLRVSFS 550
Query: 244 K 244
K
Sbjct: 551 K 551
>gi|380746090|gb|AFE47978.1| sans fille, partial [Drosophila mayaguana]
Length = 93
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 59/121 (48%), Gaps = 35/121 (28%)
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH-------EEKGKK 122
SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ + EEK K
Sbjct: 1 SASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDK 60
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
+K Q A A NP + PPN ILF+ N+P +
Sbjct: 61 KKKQSSAENA----NPNT------------------------QTEQPPNQILFLTNLPEE 92
Query: 183 T 183
T
Sbjct: 93 T 93
>gi|71023005|ref|XP_761732.1| hypothetical protein UM05585.1 [Ustilago maydis 521]
gi|46101218|gb|EAK86451.1| hypothetical protein UM05585.1 [Ustilago maydis 521]
Length = 303
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 7/91 (7%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+ NT+ ++ ++ +L+Q L A+F +G +L+++A + +GQA++VF+ V+ ++
Sbjct: 76 TSGNTLLVD------RVAELRQQLLALFSTYGRVLDVVATRAPSMRGQAFVVFESVSFSS 129
Query: 73 AAVEKMQGFPFYDKPMRIQYAK-TKSDIIAK 102
AA ++GFPFY K + I+Y+ TKS + K
Sbjct: 130 AAKRGLEGFPFYGKSLHIEYSTGTKSKALLK 160
>gi|67619324|ref|XP_667641.1| U1 snrnp [Cryptosporidium hominis TU502]
gi|54658786|gb|EAL37403.1| U1 snrnp [Cryptosporidium hominis]
Length = 267
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAA 74
N TIY+NNLN+ + I + K +L +F ++G I I F + KGQAW+ F + SA A
Sbjct: 25 NKTIYVNNLNDSISIPKQKLALEEIFAKYGKIESIKMFNSYFRKGQAWITFSNAVSAVNA 84
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSD 98
V G + K + + +A +S+
Sbjct: 85 VNNEIGTQIFGKHVNVSFAAEESE 108
>gi|395514526|ref|XP_003761466.1| PREDICTED: polypyrimidine tract-binding protein 3 [Sarcophilus
harrisii]
Length = 505
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 19/249 (7%)
Query: 6 ANQGNE------ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKG 59
A QGNE SP I + NL V ++ L Q +F +FGT+L I+ F T ++
Sbjct: 145 AAQGNEGGVLPGQSPVLRIIVENLFYPVSLEVLYQ----IFSKFGTVLRIITF-TKNNQF 199
Query: 60 QAWLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHE 117
QA L + D +A A + G Y+ +RI ++K S + + R
Sbjct: 200 QALLQYADPLNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPS 259
Query: 118 EKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFV 176
G+ D A G+ + PA GA G PL+ + IP P P N++L V
Sbjct: 260 GDGQPSIDPTMAAAFGLSV-PAVPGALG---PLTITTSAVTGRMAIPGVPGVPGNSVLLV 315
Query: 177 QNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
N+ P TP L + F + + V+++ K A V+ D QA +A+ L ++
Sbjct: 316 SNLNPDAITPHGLFILFGVYGDVQRVKIMFNKKENALVQMADANQAQLAINHLSGQRLYG 375
Query: 236 QQLLITYAK 244
+ L T +K
Sbjct: 376 KVLRATLSK 384
>gi|328866616|gb|EGG14999.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 505
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 31/227 (13%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVAS 70
P+N I+I L DQL + F +G +LE +L T +GQA + F +V S
Sbjct: 238 PSNNIFIKGLPTTFTQDQL----NTFFSTYGIVLESKVLLDIATNASRGQALVRFSEVES 293
Query: 71 ATAAVEKMQG--FPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHD 128
AT A++ + FP DKP+ I+YA ++ D I K R+K ++ R +
Sbjct: 294 ATKAIKALDNYKFPGSDKPVIIKYADSEDDKILK---------RQKATSKRQPIRYSPYP 344
Query: 129 ANQAGMGL-NPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMA 187
+ A L +PA + A P L I P ++ P N L+V N+P D
Sbjct: 345 SPNATPSLYSPAAYYSQMAMPSLPTIQSP-----ILSTGSDPTN--LYVYNLPTDADDAL 397
Query: 188 LQMFFSQFPGFKEVRMV-----EAKPGIAFVEYGDEMQATVAMQSLQ 229
L FS V++V +A G FV + + A+ S+
Sbjct: 398 LYRLFSPSGAIASVKVVKDPITQACRGFGFVRMVNLTDSLNAINSVN 444
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVR-MVEAKPGIA----FVEYGDEMQATVAMQSL 228
LFV +P+ T L FS F + R MV+ G++ FV+Y D A A+QS+
Sbjct: 126 LFVNFLPNTITTETLHAMFSVFGEIESCRVMVDLVSGLSRGFGFVKYKDNASAQYAIQSM 185
Query: 229 QSLKIGQQQLLITYA 243
+ KI ++ LL+ YA
Sbjct: 186 NAAKIEKKTLLVRYA 200
>gi|58263368|ref|XP_569094.1| hypothetical protein CNB00870 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108606|ref|XP_776956.1| hypothetical protein CNBB4840 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259639|gb|EAL22309.1| hypothetical protein CNBB4840 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223744|gb|AAW41787.1| hypothetical protein CNB00870 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 282
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 60/101 (59%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P+ T+Y++ L K K +L+Q L+A+F +G +++++A K +GQA++VF++ +AT
Sbjct: 24 TPSPTLYVSGLETKTKKPELRQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAAT 83
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
AA+ + G FY++ + + + + + P+ RR
Sbjct: 84 AALRGLTGETFYNRELARLFISLPAIRLTPSREYHTPKNRR 124
>gi|154340964|ref|XP_001566435.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063758|emb|CAM39946.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 114
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+YI L +K ++++++L+ QFG + +L K+ + GQA++VF DV +AT
Sbjct: 4 PKQTLYIRGLPDKSSANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATT 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
A + FY + ++ YA ++ +A P ERR+R + KKR
Sbjct: 64 ARRSLHDRMFYGRQIQAFYAHKQAFCVA-------PGERRRRDLAREKKR 106
>gi|380746112|gb|AFE47989.1| sans fille, partial [Drosophila repleta]
Length = 89
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 68 VASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+ SA+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+
Sbjct: 1 IGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 40
>gi|365981947|ref|XP_003667807.1| hypothetical protein NDAI_0A04070 [Naumovozyma dairenensis CBS 421]
gi|343766573|emb|CCD22564.1| hypothetical protein NDAI_0A04070 [Naumovozyma dairenensis CBS 421]
Length = 113
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
ISP +T+Y++NLNEK+ +L+ +L+ +F +G ++++ A K +GQA++ K+V A
Sbjct: 26 ISPRSTLYVSNLNEKINPKRLRINLYLLFSIYGEVIKV-AISAKKQRGQAYITMKNVDEA 84
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDI 99
A + F++ P+ I+++K S I
Sbjct: 85 NLAKISLNDELFFENPLHIEFSKEDSII 112
>gi|147906715|ref|NP_001083815.1| polypyrimidine tract binding protein 1 [Xenopus laevis]
gi|6002571|gb|AAF00041.1|AF091370_1 hnRNP I-related RNA transport protein VgRBP60 [Xenopus laevis]
Length = 552
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 107/253 (42%), Gaps = 26/253 (10%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L+Q +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 184 SPVLRIIVENLFYPVTLDVLQQ----IFSKFGTVLKIITF-TKNNQFQALLQYGDPVSAQ 238
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQH--- 127
A + G Y+ +RI ++K S + + R G+ DQ
Sbjct: 239 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDGQPSLDQTIAA 298
Query: 128 -------DAN-QAGMGLNPAYA---GAYG----ATPPLSQIPYPGGAKSVIPEAPAPPNN 172
AN AG G +PA+A G +G P + + I P N+
Sbjct: 299 FGAPGLISANPYAGAGFHPAFAIPQGVHGLAPLTLPSAAAAAAAAAGRLGIHGLGIPGNS 358
Query: 173 ILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL 231
+L V N+ P TP L + F + V+++ K A V+ D QA +AM L
Sbjct: 359 VLLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALVQMADGNQAQLAMSHLNGQ 418
Query: 232 KIGQQQLLITYAK 244
++ + L T +K
Sbjct: 419 RLHGKPLRTTVSK 431
>gi|389593827|ref|XP_003722162.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438660|emb|CBZ12419.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 114
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+YI L +K ++++++L+ QFG + +L K+ + GQA++VF DV +AT
Sbjct: 4 PKQTLYIRGLPDKSSANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATT 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
A + FY + ++ YA ++ +A P ERR+R + KKR
Sbjct: 64 ARRSLHDRMFYGRRIQAFYAHKQAFCVA-------PGERRRRDLAREKKR 106
>gi|148224882|ref|NP_001080169.1| polypyrimidine tract binding protein 1 [Xenopus laevis]
gi|28278766|gb|AAH45068.1| Ptbp1 protein [Xenopus laevis]
Length = 547
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 106/254 (41%), Gaps = 27/254 (10%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D L+Q +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 178 SPVLRIIVENLFYPVTLDVLQQ----IFSKFGTVLKIITF-TKNNQFQALLQYGDPMSAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R G+ DQ A
Sbjct: 233 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDGQPTLDQTIAA 292
Query: 131 -----------QAGMGLNPAYA---GAYGATPPLS-----QIPYPGGAKSVIPEAPAPPN 171
AG G PA+A G +G P++ + P P N
Sbjct: 293 FGAPGLISTNPYAGAGFPPAFAIPQGVHGTLTPMALPSAAAAAAAAAGRLGFPGFGIPGN 352
Query: 172 NILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230
++L V N+ P TP L + F + V+++ K A ++ D QA +AM L
Sbjct: 353 SVLLVSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKENALIQMADGNQAQLAMSHLNG 412
Query: 231 LKIGQQQLLITYAK 244
++ + L T +K
Sbjct: 413 QRLHGKPLRTTVSK 426
>gi|146092995|ref|XP_001466609.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398018689|ref|XP_003862509.1| hypothetical protein, conserved [Leishmania donovani]
gi|401415958|ref|XP_003872474.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|134070972|emb|CAM69649.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322488698|emb|CBZ23945.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322500739|emb|CBZ35816.1| hypothetical protein, conserved [Leishmania donovani]
Length = 114
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+YI L +K ++++++L+ QFG + +L K+ + GQA++VF DV +AT
Sbjct: 4 PKQTLYIRGLPDKSSANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATT 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR 123
A + FY + ++ YA ++ +A P ERR+R + KKR
Sbjct: 64 ARRSLHDRMFYGRRIQAFYAHKQAFCVA-------PGERRRRDLAREKKR 106
>gi|213510846|ref|NP_001133491.1| Heterogeneous nuclear ribonucleoprotein L-like [Salmo salar]
gi|209154218|gb|ACI33341.1| Heterogeneous nuclear ribonucleoprotein L-like [Salmo salar]
Length = 548
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 34/235 (14%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G+++ I+ FK ++ QA + F+ + A A + G Y ++I+YA
Sbjct: 190 LYTVCNPIGSVMRIVIFK--RNGIQAMVEFESIECAQKAKAALNGADIYAGCCTLKIEYA 247
Query: 94 K-TKSDIIAKADGTF---VPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAG--AYGAT 147
+ T+ ++I + ++ P R+ E+GK R+ QA +G +P+ G YG+
Sbjct: 248 RPTRLNVIRNDNESWDYTKPYLVRRDVSERGKGRQ-----RQAILGEHPSSYGDNGYGSH 302
Query: 148 PPLSQIPYPGGAK-----SVIPEAPAPP-----------NNILFVQNV-PHDTTPMALQM 190
PL +P PG ++ IPE A P +++ V + P +
Sbjct: 303 CPL--LPLPGNSRYKLSSHDIPEVVAYPLPQSSSYNHGSSSVAMVSGLHPAKMNCTRIFN 360
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F + ++V+ +++ PG A VE GDE A+ L S+K+ ++L + +K+
Sbjct: 361 LFCLYGNIEKVKFMKSVPGTALVEMGDEYAVDRAITHLNSIKVFGKRLNVCVSKQ 415
>gi|365760107|gb|EHN01850.1| Msl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837850|gb|EJT41708.1| MSL1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 111
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVAS 70
+ NT+Y++ LNEK+ + +L+ +L +F FG +L++ + FK K +GQA++ + +
Sbjct: 24 VEAKNTLYVSQLNEKINVQRLRVNLFLLFATFGEVLKVSMNFK--KQRGQAFVTMRTIDQ 81
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDII 100
A+ A + G F+DK ++++++K ++ +
Sbjct: 82 ASLAQISLNGELFFDKTLKVEFSKNETKTL 111
>gi|380746096|gb|AFE47981.1| sans fille, partial [Drosophila mojavensis]
Length = 92
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 35/120 (29%)
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRH-------EEKGKKR 123
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R ++ + EEK K+
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKK 60
Query: 124 KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
K Q A A NP + PPN ILF+ N+P +T
Sbjct: 61 KKQSSAENA----NPNT------------------------QTEQPPNQILFLTNLPEET 92
>gi|71026823|ref|XP_763055.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350008|gb|EAN30772.1| hypothetical protein TP03_0036 [Theileria parva]
Length = 288
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 15/73 (20%)
Query: 53 KTLKHKGQAWLVFKDVASATAAVEKMQG---------------FPFYDKPMRIQYAKTKS 97
K+ +GQAW+++ ++ SAT A++++QG + MRI YA KS
Sbjct: 2 KSFWRRGQAWVIYDNINSATEALKELQGTLHTISTLFLHLFYRHKLFGHVMRINYALEKS 61
Query: 98 DIIAKADGTFVPR 110
D+++KADGTFVPR
Sbjct: 62 DVVSKADGTFVPR 74
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230
N +LFV+++P + F PGF E +++ +K +AF+++ +E + A+Q +
Sbjct: 202 NRVLFVEDLPDGIAHEDVNNLFHHMPGFVETKLINSKH-VAFIDFDNEFNSNYALQRI-- 258
Query: 231 LKIGQQQLLITY 242
L I L I Y
Sbjct: 259 LPISYTFLHIFY 270
>gi|6322199|ref|NP_012274.1| Msl1p [Saccharomyces cerevisiae S288c]
gi|731910|sp|P40567.1|MSL1_YEAST RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|556855|emb|CAA86079.1| unnamed protein product [Saccharomyces cerevisiae]
gi|1839518|gb|AAB47134.1| YU2B"=12.8kda hypothetical YIB9w gene product [Saccharomyces
cerevisiae=yeast, MGD 353-13D, Peptide, 111 aa]
gi|45270364|gb|AAS56563.1| YIR009W [Saccharomyces cerevisiae]
gi|151943168|gb|EDN61503.1| U2 snRNP component [Saccharomyces cerevisiae YJM789]
gi|190406214|gb|EDV09481.1| U2 snRNP component [Saccharomyces cerevisiae RM11-1a]
gi|256274156|gb|EEU09066.1| Msl1p [Saccharomyces cerevisiae JAY291]
gi|285812656|tpg|DAA08555.1| TPA: Msl1p [Saccharomyces cerevisiae S288c]
gi|323333075|gb|EGA74476.1| Msl1p [Saccharomyces cerevisiae AWRI796]
gi|323337230|gb|EGA78484.1| Msl1p [Saccharomyces cerevisiae Vin13]
gi|346228220|gb|AEO21097.1| MSL1 [synthetic construct]
gi|349578960|dbj|GAA24124.1| K7_Msl1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765032|gb|EHN06547.1| Msl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298732|gb|EIW09828.1| Msl1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 111
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVASATAA 74
NT+Y++ LNEK+ + +L+ +L +F FG +L++ + FK K +GQA++ + + A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFK--KQRGQAFITMRTIDQASLA 85
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDII 100
+ G F+ KP++++++K+++ +
Sbjct: 86 QISLNGERFFGKPLKVEFSKSETKTL 111
>gi|50293545|ref|XP_449184.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528497|emb|CAG62154.1| unnamed protein product [Candida glabrata]
Length = 118
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVASAT 72
P NT+YI NLNEK+ +L+ L +F +G +L++ + FK L + QA++ + V A+
Sbjct: 32 PKNTLYIRNLNEKINTKRLRHGLFMLFSIYGEVLKVTINFKAL--RAQAFITLRSVEEAS 89
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKS 97
A ++G F++ P+ I+++K +
Sbjct: 90 LAKAALEGEVFFNIPLSIEFSKANT 114
>gi|259147268|emb|CAY80521.1| Msl1p [Saccharomyces cerevisiae EC1118]
Length = 111
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVASATAA 74
NT+Y++ LNEK+ + +L+ +L +F FG +L++ + FK K +GQA++ + + A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFK--KQRGQAFITMRTIDQASLA 85
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDII 100
+ G F+ KP++++++K+++ +
Sbjct: 86 QISLNGERFFGKPLKVEFSKSETKTL 111
>gi|260944630|ref|XP_002616613.1| hypothetical protein CLUG_03854 [Clavispora lusitaniae ATCC 42720]
gi|238850262|gb|EEQ39726.1| hypothetical protein CLUG_03854 [Clavispora lusitaniae ATCC 42720]
Length = 113
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
T+Y+NNLN+K+ LK +++ +F +G + +I +K +GQA ++ +A+ ++
Sbjct: 24 TLYVNNLNDKINRTLLKHNIYILFSTYGEVWDI----NMKLRGQAHVIMDSKETASVCLK 79
Query: 77 KMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
+ G P + K +RI ++K KS + +A+
Sbjct: 80 ALSGIPMFGKHLRIDFSKNKSKSVEQAE 107
>gi|323348091|gb|EGA82346.1| Msl1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 111
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVASATAA 74
NT+Y++ LNEK+ + +L+ +L +F FG +L++ + FK K +GQA++ + + A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFK--KQRGQAFITMRTIDQASLA 85
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDII 100
+ G F+ KP++++++K+++ +
Sbjct: 86 QISLNGERFFGKPLKVEFSKSETKTL 111
>gi|410928343|ref|XP_003977560.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Takifugu
rubripes]
Length = 534
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 105/269 (39%), Gaps = 60/269 (22%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
+ + NL V +D L Q +F +FGT+L I+ F T + QA L + D A A AA
Sbjct: 163 VVVENLLYPVSLDALCQ----IFSKFGTVLRIIVF-TKNSQFQALLQYPDAACAQAAKLS 217
Query: 78 MQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK--KRKDQHDANQAG 133
+ G Y+ +RI ++K S + K + EK + R D +
Sbjct: 218 LDGQNIYNACCTLRISFSKLTSLNV-------------KYNNEKSRDFTRPDLPPGDGQP 264
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE---------------APAPPN------- 171
+P+ A A+ A +S PY G A++ P PA P
Sbjct: 265 TLEHPSMAAAFAAPGIISAAPYAGAAQTFSPSYTIQPAVFLPPAGVTVPALPGALTSLSL 324
Query: 172 ---------------NILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEY 215
+L V N+ P TP L + F + V+++ K A V+
Sbjct: 325 AGAARMGFPSLPAGVCVLLVSNLHPERVTPHCLFILFGVYGDVMRVKILFNKKETALVQM 384
Query: 216 GDEMQATVAMQSLQSLKIGQQQLLITYAK 244
D QA +AM L K+ + + IT +K
Sbjct: 385 SDSTQAQLAMSHLNGQKLYGRAVRITVSK 413
>gi|380746184|gb|AFE48025.1| sans fille, partial [Drosophila bifurca]
Length = 92
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ K+R +
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY-------------KERPKKVKPP 47
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDT 183
+ G+ + + P + PPN ILF+ N+P +T
Sbjct: 48 KPVPGVEEKKDKKKKQSSAENSNPN--------TQTEQPPNQILFLTNLPEET 92
>gi|66363386|ref|XP_628659.1| U1 small nuclear ribonucleoprotein A, rrm domain [Cryptosporidium
parvum Iowa II]
gi|46229837|gb|EAK90655.1| U1 small nuclear ribonucleoprotein A, rrm domain [Cryptosporidium
parvum Iowa II]
Length = 122
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 8 QGNEISP-NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFK 66
G+E P N T+Y NLN+K+ LK L +F QFG I +I ++GQA+++F+
Sbjct: 8 SGSEEQPANKTLYCKNLNDKINKKDLKILLFELFIQFGLIDKITIRGGSPYRGQAFILFQ 67
Query: 67 DVASATAAVEKMQGFPFYDKPMRIQYAKTKS 97
D+ A A + G KP+ I+YAK S
Sbjct: 68 DLNCAINAKNSINGMNVLGKPIHIEYAKENS 98
>gi|321448102|gb|EFX61317.1| hypothetical protein DAPPUDRAFT_69919 [Daphnia pulex]
Length = 77
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229
PN+ILF Q + T L F +FPG ++VR+ A AF+EY DE +A A+ +L
Sbjct: 4 PNHILFCQGLDQTITAEILTEVFMRFPGLRDVRL--APKNFAFIEYEDEFKAGNALSALH 61
Query: 230 SLKIGQQQLLITYAKK 245
++G L ++YAKK
Sbjct: 62 DTQVGNITLKLSYAKK 77
>gi|449273011|gb|EMC82640.1| Polypyrimidine tract-binding protein 1, partial [Columba livia]
Length = 525
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 110/273 (40%), Gaps = 59/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 150 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 204
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI+++K S + + ++ + + D A
Sbjct: 205 HAKLSLDGQNIYNACCTLRIEFSKLTSLNVKYNN------DKSRDYTRPDLPSGDNQPA- 257
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
L+PA A A+GA P + PY G IP+A
Sbjct: 258 -----LDPAMAAAFGA-PGIISAPYAGAGFPPAFAIPQAAGLTVPNVHGALAPLAIPTAA 311
Query: 167 --------------PAPPNNILFVQN-VPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N +P TP L + F + + V+++ K A
Sbjct: 312 AAAAAAGRIAIPGLAGAGNSVLLVSNLIPERVTPQCLFILFGVYGDVQRVKILFKKKENA 371
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 372 LVQMADGNQAQLAMSHLNGQKLHGKPIRITLSK 404
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 37/210 (17%)
Query: 38 AVFKQFGTILEILAFKTL-KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTK 96
+F FG ++ K L K K A + D A A+ + G + KP+RI +K +
Sbjct: 347 CLFILFGVYGDVQRVKILFKKKENALVQMADGNQAQLAMSHLNGQKLHGKPIRITLSKHQ 406
Query: 97 SDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYP 156
+ +PR+ ++ H GL Y + PL + P
Sbjct: 407 T--------VQLPRDGQEDH------------------GLTKDYGNS-----PLHRFKKP 435
Query: 157 GGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAKPGIAFVEY 215
G + PP+ L + N+P T L+M FS G K + + +A ++
Sbjct: 436 GSKNF---QNIFPPSATLHLSNIPPSITEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQM 492
Query: 216 GDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
G +A ++ L + +G+ L ++++K
Sbjct: 493 GSLEEAIQSLIDLHNHDLGENHHLRVSFSK 522
>gi|355702910|gb|EHH29401.1| hypothetical protein EGK_09820, partial [Macaca mulatta]
Length = 555
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 108/262 (41%), Gaps = 36/262 (13%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 179 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 233
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 234 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 293
Query: 131 Q------------AGMGLNPAYA----------GAYGATPPLSQIP-----YPGGAKSVI 163
AG G P +A +GA PL+ IP + I
Sbjct: 294 AFGAPGIISASPYAGAGFPPTFAIPQAAGIQIPNIHGALVPLA-IPSAAAAAAAAGRIAI 352
Query: 164 PEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQAT 222
P N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 353 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQ 412
Query: 223 VAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 413 LAMSHLNGHKLHGKPIRITLSK 434
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 50/246 (20%)
Query: 3 PEVANQGNEISPNNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P +A GN + + ++NLN E+V QSL +F +G + + K L +K +
Sbjct: 353 PGLAGAGNSV-----LLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKEN 400
Query: 62 WLV-FKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG 120
LV D A A+ + G + KP+RI +K H+
Sbjct: 401 ALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK---------------------HQNVQ 439
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
R+ Q D GL Y + PL + PG + PP+ L + N+P
Sbjct: 440 LPREGQED-----QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIP 486
Query: 181 HDTTPMALQMFFSQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQL 238
+ L++ FS G K + + +A ++ G +A A+ L + +G+ L
Sbjct: 487 PSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHL 546
Query: 239 LITYAK 244
++++K
Sbjct: 547 RVSFSK 552
>gi|72387031|ref|XP_843940.1| U2 small nuclear ribonucleoprotein B [Trypanosoma brucei TREU927]
gi|62175534|gb|AAX69673.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei]
gi|70800472|gb|AAZ10381.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327055|emb|CBH10031.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei gambiense DAL972]
Length = 117
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+YI L +K +++++ L+ QFG ++++L K+ GQA++VF DVA+AT
Sbjct: 4 PKQTLYIRGLPDKPSAEEVRRLLYLYCTQFGPVIDVLYCKSKSMYGQAFVVFTDVATATN 63
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKS 97
A ++ FY + ++ YAK +S
Sbjct: 64 ARRELHERQFYGRIIQAFYAKRQS 87
>gi|70933887|ref|XP_738251.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium chabaudi
chabaudi]
gi|56514315|emb|CAH82541.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
chabaudi chabaudi]
Length = 107
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
LFVQN+P + AL++ F+Q+PGF EVR + + +AF+++ VAM LQS KI
Sbjct: 37 LFVQNLPDEINKNALEILFNQYPGFSEVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFKI 95
>gi|109157111|pdb|2A3J|A Chain A, Structure Of Urndesign, A Complete Computational Redesign
Of Human U1a Protein
Length = 127
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 3 PEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
P++ + P+ + I N+N +V ++L+ L+A+ G IL+I+ + + G+A+
Sbjct: 17 PDLGSTPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAY 76
Query: 63 LVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTF 107
+VF SA A VE QG+PF P+ I +++T +A+ DG+
Sbjct: 77 IVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE-DGSL 120
>gi|380746176|gb|AFE48021.1| sans fille, partial [Drosophila pachuca]
Length = 86
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKMKGTYKER 40
>gi|380746088|gb|AFE47977.1| sans fille, partial [Drosophila mainlandi]
Length = 78
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 40
>gi|380746114|gb|AFE47990.1| sans fille, partial [Drosophila richardsoni]
Length = 86
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
A+ A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 40
>gi|149246852|ref|XP_001527851.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447805|gb|EDK42193.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 176
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
N + P++T+++ NL+ K L +L+ +F FG ++ I +K A++ F V
Sbjct: 37 NNLKPSHTLFVKNLDNKANKQSLVHNLYILFSAFGDVISIKLYKCY-----AFIAFGLVE 91
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKA--DGTFVPRERRKRHEEKGKKRKDQH 127
SA A+ +Q F+++P++I YA +S ++A A G + ++ + E G + DQ+
Sbjct: 92 SAKLALRSLQEEEFFERPLKIGYALKESKVVANALSGGKNLNMDKVETDNENGDQNGDQN 151
>gi|68465088|ref|XP_723243.1| hypothetical protein CaO19.12210 [Candida albicans SC5314]
gi|46445270|gb|EAL04539.1| hypothetical protein CaO19.12210 [Candida albicans SC5314]
Length = 131
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ T+Y+ NLN K+ L +L+ +F FG I+ I L++ G A+++F ++ SA
Sbjct: 28 LKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISI----NLQN-GFAFIIFSNLNSA 82
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
T A+ ++ F+DKP+ + YA +S +I++
Sbjct: 83 TLALRNLKNQDFFDKPLVLNYAVKESKVISQ 113
>gi|390332444|ref|XP_003723502.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 5
[Strongylocentrotus purpuratus]
Length = 555
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 115/260 (44%), Gaps = 42/260 (16%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P+V + G ++ + + N+ ++ +D +LH +F+++GT+L I+ F + QA
Sbjct: 201 HPKVPDTGGGVNTILRVIVENVTYQITVD----TLHEIFRKYGTVLRIVTF-IKSGQFQA 255
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKP--MRIQYAKTKSDIIAKADGTFVPRERRKRHEEK 119
+ F D + A A ++ G Y+ +RI ++K + + K + EK
Sbjct: 256 LVQFSDASQAAVAKLELDGKNIYNNCCQLRIDFSKLTNLSV-------------KYNNEK 302
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIP-YPGGAKSV------------IPEA 166
+ G++P+ A G +P +P G ++ +P
Sbjct: 303 SRDYTCDLPQGDGLTGVDPSTAAMLG-------VPGFPAGLSALPHHAAAAAQGMRMPGM 355
Query: 167 PAPP-NNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224
P ++++ V N+ P TP AL F + + V+++ K A ++ D Q+ +A
Sbjct: 356 YMPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDNALIQMSDPNQSQLA 415
Query: 225 MQSLQSLKIGQQQLLITYAK 244
M+ L +K+ +Q+ +T +K
Sbjct: 416 MKHLSGVKLYGKQIRVTASK 435
>gi|348550210|ref|XP_003460925.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1
[Cavia porcellus]
Length = 557
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 36/262 (13%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T + QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNSQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 295
Query: 131 Q------------AGMGLNPAYA----------GAYGATPPLSQIP-----YPGGAKSVI 163
AG G P +A +GA PL+ IP + I
Sbjct: 296 AFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLA-IPSAAAAAAAAGRIGI 354
Query: 164 PEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQAT 222
P N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 355 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQ 414
Query: 223 VAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 415 LAMSHLNGHKLHGKPIRITLSK 436
>gi|238878692|gb|EEQ42330.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 131
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ T+Y+ NLN K+ L +L+ +F FG I+ I L++ G A+++F ++ SA
Sbjct: 28 LKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISI----NLQN-GFAFIIFSNLNSA 82
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
T A+ ++ F+DKP+ + YA +S +I++
Sbjct: 83 TLALRNLKNQDFFDKPLVLNYAVKESKVISQ 113
>gi|390332442|ref|XP_003723501.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 4
[Strongylocentrotus purpuratus]
Length = 662
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 115/260 (44%), Gaps = 42/260 (16%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P+V + G ++ + + N+ ++ +D +LH +F+++GT+L I+ F + QA
Sbjct: 308 HPKVPDTGGGVNTILRVIVENVTYQITVD----TLHEIFRKYGTVLRIVTF-IKSGQFQA 362
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKP--MRIQYAKTKSDIIAKADGTFVPRERRKRHEEK 119
+ F D + A A ++ G Y+ +RI ++K + + K + EK
Sbjct: 363 LVQFSDASQAAVAKLELDGKNIYNNCCQLRIDFSKLTNLSV-------------KYNNEK 409
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIP-YPGGAKSV------------IPEA 166
+ G++P+ A G +P +P G ++ +P
Sbjct: 410 SRDYTCDLPQGDGLTGVDPSTAAMLG-------VPGFPAGLSALPHHAAAAAQGMRMPGM 462
Query: 167 PAPP-NNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224
P ++++ V N+ P TP AL F + + V+++ K A ++ D Q+ +A
Sbjct: 463 YMPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDNALIQMSDPNQSQLA 522
Query: 225 MQSLQSLKIGQQQLLITYAK 244
M+ L +K+ +Q+ +T +K
Sbjct: 523 MKHLSGVKLYGKQIRVTASK 542
>gi|390332446|ref|XP_003723503.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 6
[Strongylocentrotus purpuratus]
Length = 603
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 115/260 (44%), Gaps = 42/260 (16%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P+V + G ++ + + N+ ++ +D +LH +F+++GT+L I+ F + QA
Sbjct: 249 HPKVPDTGGGVNTILRVIVENVTYQITVD----TLHEIFRKYGTVLRIVTF-IKSGQFQA 303
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKP--MRIQYAKTKSDIIAKADGTFVPRERRKRHEEK 119
+ F D + A A ++ G Y+ +RI ++K + + K + EK
Sbjct: 304 LVQFSDASQAAVAKLELDGKNIYNNCCQLRIDFSKLTNLSV-------------KYNNEK 350
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIP-YPGGAKSV------------IPEA 166
+ G++P+ A G +P +P G ++ +P
Sbjct: 351 SRDYTCDLPQGDGLTGVDPSTAAMLG-------VPGFPAGLSALPHHAAAAAQGMRMPGM 403
Query: 167 PAPP-NNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224
P ++++ V N+ P TP AL F + + V+++ K A ++ D Q+ +A
Sbjct: 404 YMPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDNALIQMSDPNQSQLA 463
Query: 225 MQSLQSLKIGQQQLLITYAK 244
M+ L +K+ +Q+ +T +K
Sbjct: 464 MKHLSGVKLYGKQIRVTASK 483
>gi|255728035|ref|XP_002548943.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133259|gb|EER32815.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 142
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P T+Y+ NLN K+ + +L+ + FG ++ I LK +G A+++F SA
Sbjct: 29 LKPMQTLYVKNLNTKINKQIMIHNLYLLLSAFGDVISI----NLK-RGFAFVIFASTNSA 83
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
+ A+ +Q F+DKP+ + YA +S +I++A + R E KG+ D
Sbjct: 84 SLALRTLQNEEFFDKPLVLNYAVKESKLISRAKNEIL-RNELGNVESKGEDEDD 136
>gi|26331660|dbj|BAC29560.1| unnamed protein product [Mus musculus]
gi|148699700|gb|EDL31647.1| mCG13402, isoform CRA_d [Mus musculus]
Length = 489
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 13/237 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 140 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 194
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 195 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 251
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMA 187
A GL+ P GA S ++ IP N++L V N+ P TP +
Sbjct: 252 MAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQS 311
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 312 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 368
>gi|116517303|ref|NP_032982.2| polypyrimidine tract-binding protein 1 isoform 2 [Mus musculus]
gi|26336949|dbj|BAC32158.1| unnamed protein product [Mus musculus]
gi|26342100|dbj|BAC34712.1| unnamed protein product [Mus musculus]
gi|26349809|dbj|BAC38544.1| unnamed protein product [Mus musculus]
gi|74211646|dbj|BAE29183.1| unnamed protein product [Mus musculus]
gi|74212275|dbj|BAE40295.1| unnamed protein product [Mus musculus]
gi|148699696|gb|EDL31643.1| mCG13402, isoform CRA_a [Mus musculus]
gi|148699698|gb|EDL31645.1| mCG13402, isoform CRA_a [Mus musculus]
Length = 529
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 13/237 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 291
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMA 187
A GL+ P GA S ++ IP N++L V N+ P TP +
Sbjct: 292 MAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQS 351
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 408
>gi|148699697|gb|EDL31644.1| mCG13402, isoform CRA_b [Mus musculus]
Length = 499
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 13/237 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 150 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 204
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 205 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 261
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMA 187
A GL+ P GA S ++ IP N++L V N+ P TP +
Sbjct: 262 MAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQS 321
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 322 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 378
>gi|255567158|ref|XP_002524560.1| RNA binding protein, putative [Ricinus communis]
gi|223536113|gb|EEF37768.1| RNA binding protein, putative [Ricinus communis]
Length = 929
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 29/233 (12%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ +++ NL+ + ++ L F +FG L+ +AF+ + A++ FK+ A A
Sbjct: 50 PSRHLWVGNLSHSI----MENDLTDHFVRFGE-LDSVAFQ--PGRSYAFINFKNDDEAIA 102
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A++ +QGFP P+RI++AK + D ++ R +R KG Q D+
Sbjct: 103 ALKALQGFPLAGNPLRIEFAKADKSSVPSRDEDYLQRRDEQRSAMKGSPFS-QRDSRLRA 161
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPH--DTTPMALQMF 191
P YA KS + + A P+ +L++ P M L+
Sbjct: 162 ASPEPFYAD-----------------KSKVSDKSAEPSEVLWI-GFPALLKVDEMILRKA 203
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
FS F +++ + + AFV + + M A A ++LQ G ++ I +A+
Sbjct: 204 FSPFGDIEKITVFPGR-SYAFVRFRNVMSACRAKETLQGKLFGNPRVHICFAR 255
>gi|74178228|dbj|BAE29899.1| unnamed protein product [Mus musculus]
Length = 529
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 13/237 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 235 HAKLSLGGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 291
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMA 187
A GL+ P GA S ++ IP N++L V N+ P TP +
Sbjct: 292 MAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQS 351
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 408
>gi|30039680|ref|NP_835458.1| polypyrimidine tract-binding protein 3 isoform 2 [Mus musculus]
gi|50401558|sp|Q8BHD7.1|PTBP3_MOUSE RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|26329429|dbj|BAC28453.1| unnamed protein product [Mus musculus]
gi|26353590|dbj|BAC40425.1| unnamed protein product [Mus musculus]
gi|34785867|gb|AAH57641.1| ROD1 regulator of differentiation 1 (S. pombe) [Mus musculus]
Length = 523
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 46/275 (16%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
AN+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 139 TANEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 193
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 194 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 250
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------ 168
G + A G ++ YAGA G P I +P A +P P
Sbjct: 251 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAP---AIAFPQAAGLSVPAVPGALGPLT 307
Query: 169 ------------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P N++L V N+ P TP L + F + V+++ K
Sbjct: 308 LTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKE 367
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 368 NALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 402
>gi|19911240|dbj|BAB86943.1| polypirimidine tract binding protein [Mus musculus]
Length = 528
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 13/237 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +R+ ++K S ++ D + R+ + G +
Sbjct: 235 HAKLSLDGQNIYNACCTLRVDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 291
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMA 187
A GL+ P GA S ++ IP N++L V N+ P TP +
Sbjct: 292 MAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQS 351
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 408
>gi|380746134|gb|AFE48000.1| sans fille, partial [Drosophila longicornis]
Length = 84
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
A+ MQGFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 2 ALRTMQGFPFYDKPMRIAYSKSDSDIVAKMKGTYKER 38
>gi|148670262|gb|EDL02209.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Mus
musculus]
Length = 590
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 46/275 (16%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
AN+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 206 TANEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 260
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 261 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 317
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------ 168
G + A G ++ YAGA G P I +P A +P P
Sbjct: 318 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAP---AIAFPQAAGLSVPAVPGALGPLT 374
Query: 169 ------------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P N++L V N+ P TP L + F + V+++ K
Sbjct: 375 LTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKE 434
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 435 NALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 469
>gi|13879326|gb|AAH06638.1| ROD1 regulator of differentiation 1 (S. pombe) [Mus musculus]
Length = 520
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 46/275 (16%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
AN+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 136 TANEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 190
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 191 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 247
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------ 168
G + A G ++ YAGA G P I +P A +P P
Sbjct: 248 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAP---AIAFPQAAGLSVPAVPGALGPLT 304
Query: 169 ------------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P N++L V N+ P TP L + F + V+++ K
Sbjct: 305 LTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKE 364
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 365 NALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 399
>gi|255003709|ref|NP_659153.2| polypyrimidine tract-binding protein 3 isoform 1 [Mus musculus]
Length = 551
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 46/275 (16%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
AN+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 167 TANEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 221
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 222 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 278
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------ 168
G + A G ++ YAGA G P I +P A +P P
Sbjct: 279 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAP---AIAFPQAAGLSVPAVPGALGPLT 335
Query: 169 ------------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P N++L V N+ P TP L + F + V+++ K
Sbjct: 336 LTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKE 395
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 396 NALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 430
>gi|148670261|gb|EDL02208.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a [Mus
musculus]
Length = 528
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 46/275 (16%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
AN+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 170 TANEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 224
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 225 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 281
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------ 168
G + A G ++ YAGA G P I +P A +P P
Sbjct: 282 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAP---AIAFPQAAGLSVPAVPGALGPLT 338
Query: 169 ------------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P N++L V N+ P TP L + F + V+++ K
Sbjct: 339 LTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKE 398
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 399 NALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 433
>gi|406700831|gb|EKD03993.1| hypothetical protein A1Q2_01667 [Trichosporon asahii var. asahii
CBS 8904]
Length = 282
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 27/119 (22%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI-------------------------- 46
+P+ T+++ NL K K +L+Q L+A+F +G +
Sbjct: 5 TPSPTLFVGNLETKTKKPELRQQLYALFTPYGRVGDMETNGCTRWADYSFGSTAIKLTGR 64
Query: 47 LEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD-IIAKAD 104
++I+A K +GQA++VF++ A+ATAA+ + FY++ M I YAK S+ +A+ D
Sbjct: 65 IDIVAKKHDGGRGQAFIVFEEQAAATAALRGLNDTQFYNRDMHIAYAKNPSNATLARED 123
>gi|148670263|gb|EDL02210.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_c [Mus
musculus]
Length = 556
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 46/275 (16%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
AN+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 172 TANEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 226
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 227 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 283
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------ 168
G + A G ++ YAGA G P I +P A +P P
Sbjct: 284 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAP---AIAFPQAAGLSVPAVPGALGPLT 340
Query: 169 ------------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P N++L V N+ P TP L + F + V+++ K
Sbjct: 341 LTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKE 400
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 401 NALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 435
>gi|68464713|ref|XP_723434.1| hypothetical protein CaO19.4748 [Candida albicans SC5314]
gi|46445468|gb|EAL04736.1| hypothetical protein CaO19.4748 [Candida albicans SC5314]
Length = 131
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ T+Y+ NLN K+ L +L+ +F FG I+ I L++ G A+++F ++ SA
Sbjct: 28 LKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISI----NLQN-GFAFIIFSNLNSA 82
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIAK 102
T A+ ++ F+DKP+ + YA +S I++
Sbjct: 83 TLALRNLKNQDFFDKPLVLNYAVKESKAISQ 113
>gi|57002|emb|CAA43202.1| pyrimidine binding protein 1 [Rattus norvegicus]
Length = 530
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 291
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 292 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 351
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A VE D QA +AM L K+ + + IT +K
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 409
>gi|351714013|gb|EHB16932.1| Polypyrimidine tract-binding protein 1, partial [Heterocephalus
glaber]
Length = 548
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 107/262 (40%), Gaps = 36/262 (13%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T + QA L + D SA
Sbjct: 170 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNSQFQALLQYADPVSAQ 224
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 225 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 284
Query: 131 Q------------AGMGLNPAYA----------GAYGATPPLSQIP-----YPGGAKSVI 163
AG G P +A +GA PL+ IP + I
Sbjct: 285 AFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLA-IPSAAAAAAAAGRIGI 343
Query: 164 PEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQAT 222
P N++L V N+ P TP +L + F + + V+++ K A V+ D +A
Sbjct: 344 PGLGGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSRAQ 403
Query: 223 VAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 404 LAMSHLDGHKLHGKPIRITLSK 425
>gi|367017704|ref|XP_003683350.1| hypothetical protein TDEL_0H02800 [Torulaspora delbrueckii]
gi|359751014|emb|CCE94139.1| hypothetical protein TDEL_0H02800 [Torulaspora delbrueckii]
Length = 116
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDV 68
GN+ P +T+Y+NNL++ + I +L +L+ +F +G +++I + +GQA++ K++
Sbjct: 28 GNQ--PKHTLYVNNLSDHIDIKRLTTNLYLLFSIYGEVIKI-TVNPRRQRGQAFITMKNI 84
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKTKS 97
+ A+ + PF+ KP+ + +++ ++
Sbjct: 85 DESNLAIISLNNEPFFGKPLHVSFSREET 113
>gi|390458239|ref|XP_003732081.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2
[Callithrix jacchus]
Length = 524
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 141 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 195
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 196 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 252
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A A G ++ YAGA G P + +P GA
Sbjct: 253 GDGQPSLEPAMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 312
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 313 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 372
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 373 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 403
>gi|296190586|ref|XP_002743247.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1
[Callithrix jacchus]
Length = 558
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 175 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 229
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 230 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 286
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A A G ++ YAGA G P + +P GA
Sbjct: 287 GDGQPSLEPAMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 346
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 347 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 406
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 407 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 437
>gi|397524|emb|CAA52653.1| polypyrimidine tract binding protein [Rattus norvegicus]
Length = 556
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 107/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 283
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
L+ A A+GA +S PY G IP+A
Sbjct: 284 SQP-SLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 342
Query: 167 --------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 343 AAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA 402
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
VE D QA +AM L K+ + + IT +K
Sbjct: 403 LVEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 435
>gi|348505292|ref|XP_003440195.1| PREDICTED: regulator of differentiation 1 [Oreochromis niloticus]
Length = 514
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 30/247 (12%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V ++ L+Q +F +FG++L+I+ F T ++ QA L F D A
Sbjct: 160 SPVLRIIVENLFYPVTLEVLQQ----IFSKFGSVLKIITF-TRNNQFQALLQFSDTVHAQ 214
Query: 73 AAVEKMQGFPFYD--KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K + + + + R + + +
Sbjct: 215 HAKATLDGQNIYNGCCTLRIDFSKLSALNVKYNND-------KSRDFTRADLPSGELEPT 267
Query: 131 QA-GMGLNPAYAGAYGATPP-------LSQIPYPGGAKS----VIPEAPAPPNNILFVQN 178
A G+ L P A A+ PP LS PG S + AP +++L V N
Sbjct: 268 AAFGVALPPYGAAAF---PPTFHQHTGLSMAAVPGSLVSHPRVSLQMAPPVVHSVLLVSN 324
Query: 179 V-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237
+ P TP L + F + + V+++ K A V+ D QA +AM L ++
Sbjct: 325 LNPESVTPHCLFILFGVYGDVQRVKILFNKKENALVQMSDATQAQLAMSHLNGQRLHGNV 384
Query: 238 LLITYAK 244
+ +T +K
Sbjct: 385 IRVTLSK 391
>gi|20809354|gb|AAH28848.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 43/265 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 294
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 295 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAASR 349
Query: 167 ------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 350 IAIPGLAGAGNSVLLVSNLNPERVTPQSLLILFGVYGDVQRVKILFNKKENALVQMADGS 409
Query: 220 QATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 410 QAQLAMSHLNGHKLHGKSVRITLSK 434
>gi|149037108|gb|EDL91639.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b
[Rattus norvegicus]
gi|149037109|gb|EDL91640.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b
[Rattus norvegicus]
Length = 514
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 40/272 (14%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 130 TSNEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 184
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 185 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 241
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATP--------------------PLSQIP 154
G + A G ++ YAGA G P PL+
Sbjct: 242 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTS 301
Query: 155 YPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
+ IP A P N++L V N+ P TP L + F + V+++ K A
Sbjct: 302 SAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENAL 361
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L ++ + L T +K
Sbjct: 362 VQMADASQAQIAMNHLSGQRLYGKVLRATLSK 393
>gi|13786186|ref|NP_112636.1| polypyrimidine tract-binding protein 3 [Rattus norvegicus]
gi|50401225|sp|Q9Z118.1|PTBP3_RAT RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|4514552|dbj|BAA75465.1| Rod1 [Rattus norvegicus]
Length = 523
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 40/272 (14%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 139 TSNEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 193
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 194 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 250
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATP--------------------PLSQIP 154
G + A G ++ YAGA G P PL+
Sbjct: 251 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTS 310
Query: 155 YPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
+ IP A P N++L V N+ P TP L + F + V+++ K A
Sbjct: 311 SAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENAL 370
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L ++ + L T +K
Sbjct: 371 VQMADASQAQIAMNHLSGQRLYGKVLRATLSK 402
>gi|149037107|gb|EDL91638.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a
[Rattus norvegicus]
Length = 528
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 40/272 (14%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 170 TSNEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 224
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 225 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 281
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATP--------------------PLSQIP 154
G + A G ++ YAGA G P PL+
Sbjct: 282 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTS 341
Query: 155 YPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
+ IP A P N++L V N+ P TP L + F + V+++ K A
Sbjct: 342 SAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENAL 401
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L ++ + L T +K
Sbjct: 402 VQMADASQAQIAMNHLSGQRLYGKVLRATLSK 433
>gi|195443583|ref|XP_002069483.1| GK22267 [Drosophila willistoni]
gi|194165568|gb|EDW80469.1| GK22267 [Drosophila willistoni]
Length = 69
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 78 MQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
MQGFPFYDKPMRI Y+K+ SDI+AK GTF R
Sbjct: 1 MQGFPFYDKPMRIAYSKSDSDIVAKLKGTFKER 33
>gi|224089408|ref|XP_002188238.1| PREDICTED: polypyrimidine tract-binding protein 3 [Taeniopygia
guttata]
Length = 488
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 16/230 (6%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
I + N+ V +D L Q +F +FG +L I+ F ++ Q+ L + D +A A
Sbjct: 151 IIVENVFYPVTLDILYQ----IFSKFGFVLRIIMFHK-NNQFQSLLQYSDAMNAYYAKMS 205
Query: 78 MQGFPFYD--KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG 135
+ G Y +RI+++K +++ K + ++ + D + +
Sbjct: 206 LDGHCIYTGCCTLRIEFSKL-ANLTVKYNN-----DKSRDFTRIDLPFGDGQRTVETSIP 259
Query: 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMALQMFFSQ 194
P+ GA PL IP+ P N++L V N+ P TP L + F
Sbjct: 260 FGPSVLPVPGALGPLMVTTSAAPGHMTIPDIPG--NSVLLVSNLNPEAITPYGLFILFGV 317
Query: 195 FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ V+++ K GIA V+ D QA +A+ L ++ + + T +K
Sbjct: 318 YGDVHRVKIMFKKRGIALVQMADATQAQLAINYLNGQRLYGRVMHATLSK 367
>gi|390332435|ref|XP_003723499.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 2
[Strongylocentrotus purpuratus]
Length = 631
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 38/275 (13%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P+V + G ++ + + N+ ++ +D +LH +F+++GT+L I+ F + QA
Sbjct: 243 HPKVPDTGGGVNTILRVIVENVTYQITVD----TLHEIFRKYGTVLRIVTFIK-SGQFQA 297
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKP--MRIQYAKTKSDIIAKADGTFVPRERRKRHEEK 119
+ F D + A A ++ G Y+ +RI ++K +++ K + +
Sbjct: 298 LVQFSDASQAAVAKLELDGKNIYNNCCQLRIDFSKL-TNLSVKYNNEKSRDYTCDLPQGD 356
Query: 120 GKKRKDQHDANQAGM----GLNPAYAGAYG----ATPPLSQIPY-----PG--GAKSVIP 164
G D A G GL YA +G T P+S Y PG S +P
Sbjct: 357 GLTGVDPSTAAMLGFGGAAGLISPYATGHGLPFAGTTPVSLAGYHQAGVPGFPAGLSALP 416
Query: 165 EA---------------PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P+ + IL P TP AL F + + V+++ K
Sbjct: 417 HHAAAAAQGMRMPGMYMPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRD 476
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A ++ D Q+ +AM+ L +K+ +Q+ +T +K
Sbjct: 477 NALIQMSDPNQSQLAMKHLSGVKLYGKQIRVTASK 511
>gi|344230443|gb|EGV62328.1| hypothetical protein CANTEDRAFT_115788 [Candida tenuis ATCC
10573]
Length = 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76
TIYINNLNEKV + LK+ L + K + I +I KTL+ KGQA++ FK+ + +
Sbjct: 3 TIYINNLNEKVSANTLKRELQHLLKPYNVI-DIHVKKTLRKKGQAFVSFKN-ENIDNIIR 60
Query: 77 KMQGFPFYDKPMRIQYAKTKS 97
K+ +K +R+ +AK S
Sbjct: 61 KLNNHVLLNKSIRVTHAKQNS 81
>gi|266862|sp|Q00438.1|PTBP1_RAT RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I; AltName: Full=Pyrimidine-binding protein;
Short=PYBP
Length = 555
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 107/272 (39%), Gaps = 57/272 (20%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDL-PSG 282
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKS----------VIPEA-------------- 166
+ L+ A A+GA +S PY G S +P
Sbjct: 283 DSQPSLDQTMAAAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAA 342
Query: 167 -------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 343 AAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENAL 402
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
VE D QA +AM L K+ + + IT +K
Sbjct: 403 VEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 434
>gi|42490826|gb|AAH66210.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 43/265 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 294
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 295 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAASR 349
Query: 167 ------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 350 IAIPGLAGAGNSVLLVSNLYPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGS 409
Query: 220 QATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 410 QAQLAMSHLNGHKLHGKSVRITLSK 434
>gi|74152131|dbj|BAE32096.1| unnamed protein product [Mus musculus]
Length = 555
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 107/272 (39%), Gaps = 57/272 (20%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 283
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
L+ A A+GA +S PY G IP+A
Sbjct: 284 SQP-SLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 342
Query: 167 -------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 343 AAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENAL 402
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 403 VQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 434
>gi|116517301|ref|NP_001070831.1| polypyrimidine tract-binding protein 1 isoform 1 [Mus musculus]
gi|13938631|gb|AAH07472.1| Polypyrimidine tract binding protein 1 [Mus musculus]
gi|26328983|dbj|BAC28230.1| unnamed protein product [Mus musculus]
gi|26334239|dbj|BAC30837.1| unnamed protein product [Mus musculus]
gi|26335929|dbj|BAC31665.1| unnamed protein product [Mus musculus]
gi|26341260|dbj|BAC34292.1| unnamed protein product [Mus musculus]
gi|26353506|dbj|BAC40383.1| unnamed protein product [Mus musculus]
gi|74191391|dbj|BAE30277.1| unnamed protein product [Mus musculus]
gi|148699699|gb|EDL31646.1| mCG13402, isoform CRA_c [Mus musculus]
Length = 555
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 43/265 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 294
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 295 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAASR 349
Query: 167 ------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 350 IAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGS 409
Query: 220 QATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 410 QAQLAMSHLNGHKLHGKSVRITLSK 434
>gi|390332437|ref|XP_003723500.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 3
[Strongylocentrotus purpuratus]
Length = 649
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 38/275 (13%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P+V + G ++ + + N+ ++ +D +LH +F+++GT+L I+ F + QA
Sbjct: 261 HPKVPDTGGGVNTILRVIVENVTYQITVD----TLHEIFRKYGTVLRIVTF-IKSGQFQA 315
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKP--MRIQYAKTKSDIIAKADGTFVPRERRKRHEEK 119
+ F D + A A ++ G Y+ +RI ++K +++ K + +
Sbjct: 316 LVQFSDASQAAVAKLELDGKNIYNNCCQLRIDFSKL-TNLSVKYNNEKSRDYTCDLPQGD 374
Query: 120 GKKRKDQHDANQAGM----GLNPAYAGAYG----ATPPLSQIPY-----PG--GAKSVIP 164
G D A G GL YA +G T P+S Y PG S +P
Sbjct: 375 GLTGVDPSTAAMLGFGGAAGLISPYATGHGLPFAGTTPVSLAGYHQAGVPGFPAGLSALP 434
Query: 165 EA---------------PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P+ + IL P TP AL F + + V+++ K
Sbjct: 435 HHAAAAAQGMRMPGMYMPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRD 494
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A ++ D Q+ +AM+ L +K+ +Q+ +T +K
Sbjct: 495 NALIQMSDPNQSQLAMKHLSGVKLYGKQIRVTASK 529
>gi|354480918|ref|XP_003502650.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Cricetulus
griseus]
Length = 591
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 107/272 (39%), Gaps = 57/272 (20%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 216 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 270
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 271 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 319
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
L+ A A+GA +S PY G IP+A
Sbjct: 320 SQP-SLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 378
Query: 167 -------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 379 AAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENAL 438
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 439 VQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 470
>gi|343959136|dbj|BAK63423.1| regulator of differentiation 1 [Pan troglodytes]
Length = 524
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 141 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 195
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 196 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 252
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 253 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVSGALGPLTITSS 312
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 313 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 372
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 373 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 403
>gi|28849152|dbj|BAC65159.1| polypirimidine tract binding protein [Mus musculus]
Length = 554
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 43/265 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 294
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 295 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAASR 349
Query: 167 ------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 350 IAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGS 409
Query: 220 QATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 410 QAQLAMSHLNGHKLHGKSVRITLSK 434
>gi|344243367|gb|EGV99470.1| Polypyrimidine tract-binding protein 1 [Cricetulus griseus]
Length = 528
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 43/265 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 153 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 207
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 208 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 267
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 268 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAGR 322
Query: 167 ------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 323 IAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGS 382
Query: 220 QATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 383 QAQLAMSHLNGHKLHGKSVRITLSK 407
>gi|224129262|ref|XP_002320541.1| predicted protein [Populus trichocarpa]
gi|222861314|gb|EEE98856.1| predicted protein [Populus trichocarpa]
Length = 827
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ +++ NL+ ++ L F QFG L+ +AF+ + A++ F A A
Sbjct: 6 PSRHLWVGNLSHSIEETDLTDE----FLQFGD-LDSVAFQP--GRSYAFVNFNKEEDAIA 58
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A++ +QG+P P+RI++ AKAD + P H+E +R+D+ G
Sbjct: 59 AIKSLQGYPLAGNPLRIEF--------AKADKSSTP-----SHDEDYLQRRDEQRLTLRG 105
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPH--DTTPMALQMF 191
+ A+P + YP KS + + A P+ +L++ P M L+
Sbjct: 106 SPFLQRDSRVRNASP---ETFYPD--KSKMSDNSAEPSEVLWI-GFPALLKVDEMILRKA 159
Query: 192 FSQFPGFKEVRMVEAKPG--IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
FS F E+ + PG AFV + + A A ++LQ G ++ I +AK
Sbjct: 160 FSP---FGEIEKITVFPGRSYAFVRFTNLTSACRAKETLQGKLFGNPRVHICFAK 211
>gi|402765974|ref|NP_071961.2| polypyrimidine tract-binding protein 1 isoform b [Rattus
norvegicus]
gi|149034649|gb|EDL89386.1| polypyrimidine tract binding protein 1, isoform CRA_c [Rattus
norvegicus]
Length = 530
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 291
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 292 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 351
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 409
>gi|390332439|ref|XP_780392.3| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 7
[Strongylocentrotus purpuratus]
Length = 659
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 38/275 (13%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P+V + G ++ + + N+ ++ +D +LH +F+++GT+L I+ F + QA
Sbjct: 271 HPKVPDTGGGVNTILRVIVENVTYQITVD----TLHEIFRKYGTVLRIVTFIK-SGQFQA 325
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKP--MRIQYAKTKSDIIAKADGTFVPRERRKRHEEK 119
+ F D + A A ++ G Y+ +RI ++K +++ K + +
Sbjct: 326 LVQFSDASQAAVAKLELDGKNIYNNCCQLRIDFSKL-TNLSVKYNNEKSRDYTCDLPQGD 384
Query: 120 GKKRKDQHDANQAGM----GLNPAYAGAYG----ATPPLSQIPY-----PG--GAKSVIP 164
G D A G GL YA +G T P+S Y PG S +P
Sbjct: 385 GLTGVDPSTAAMLGFGGAAGLISPYATGHGLPFAGTTPVSLAGYHQAGVPGFPAGLSALP 444
Query: 165 EA---------------PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P+ + IL P TP AL F + + V+++ K
Sbjct: 445 HHAAAAAQGMRMPGMYMPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRD 504
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A ++ D Q+ +AM+ L +K+ +Q+ +T +K
Sbjct: 505 NALIQMSDPNQSQLAMKHLSGVKLYGKQIRVTASK 539
>gi|149034648|gb|EDL89385.1| polypyrimidine tract binding protein 1, isoform CRA_b [Rattus
norvegicus]
Length = 490
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 140 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 194
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 195 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 251
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 252 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 311
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 312 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 369
>gi|74196849|dbj|BAE43140.1| unnamed protein product [Mus musculus]
Length = 530
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 291
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 292 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQ 351
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 409
>gi|149034650|gb|EDL89387.1| polypyrimidine tract binding protein 1, isoform CRA_d [Rattus
norvegicus]
Length = 500
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 150 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 204
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 205 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 261
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 262 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 321
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 322 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKSVRITLSK 379
>gi|156846540|ref|XP_001646157.1| hypothetical protein Kpol_1039p50 [Vanderwaltozyma polyspora DSM
70294]
gi|156116830|gb|EDO18299.1| hypothetical protein Kpol_1039p50 [Vanderwaltozyma polyspora DSM
70294]
Length = 296
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 160 KSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
K +I + P NNIL VQN+P+ TT + L+ F+Q G KEVR+V + +AF+EY +
Sbjct: 213 KELIDLSVNPANNILLVQNLPNGTTEVQLKELFAQ-TGLKEVRLVSVR-NLAFIEYSNIQ 270
Query: 220 QAT 222
AT
Sbjct: 271 NAT 273
>gi|115634663|ref|XP_001176080.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 1
[Strongylocentrotus purpuratus]
Length = 617
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 38/275 (13%)
Query: 2 EPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
P+V + G ++ + + N+ ++ +D +LH +F+++GT+L I+ F + QA
Sbjct: 229 HPKVPDTGGGVNTILRVIVENVTYQITVD----TLHEIFRKYGTVLRIVTF-IKSGQFQA 283
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKP--MRIQYAKTKSDIIAKADGTFVPRERRKRHEEK 119
+ F D + A A ++ G Y+ +RI ++K +++ K + +
Sbjct: 284 LVQFSDASQAAVAKLELDGKNIYNNCCQLRIDFSKL-TNLSVKYNNEKSRDYTCDLPQGD 342
Query: 120 GKKRKDQHDANQAGM----GLNPAYAGAYG----ATPPLSQIPY-----PG--GAKSVIP 164
G D A G GL YA +G T P+S Y PG S +P
Sbjct: 343 GLTGVDPSTAAMLGFGGAAGLISPYATGHGLPFAGTTPVSLAGYHQAGVPGFPAGLSALP 402
Query: 165 EA---------------PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P+ + IL P TP AL F + + V+++ K
Sbjct: 403 HHAAAAAQGMRMPGMYMPSGSSVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRD 462
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A ++ D Q+ +AM+ L +K+ +Q+ +T +K
Sbjct: 463 NALIQMSDPNQSQLAMKHLSGVKLYGKQIRVTASK 497
>gi|402743987|ref|NP_001257986.1| polypyrimidine tract-binding protein 1 isoform a [Rattus
norvegicus]
gi|38197632|gb|AAH61858.1| Ptbp1 protein [Rattus norvegicus]
gi|149034647|gb|EDL89384.1| polypyrimidine tract binding protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 556
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 44/266 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 294
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 295 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAG 349
Query: 167 -------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE 218
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 350 RIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 409
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 410 SQAQLAMSHLNGHKLHGKSVRITLSK 435
>gi|55824722|gb|AAH86489.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 43/265 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 235 HAKLSLDGQNIYNACCTLRIGFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 294
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 295 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAASR 349
Query: 167 ------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEM 219
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 350 IAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGS 409
Query: 220 QATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 410 QAQLAMSHLNGHKLHGKSVRITLSK 434
>gi|413953429|gb|AFW86078.1| hypothetical protein ZEAMMB73_802063 [Zea mays]
Length = 130
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 163 IPEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG--------IAF 212
+PE P PP+ N L+++ VP D T + F F GF+EVR+V +P + F
Sbjct: 18 MPEPPLPPDASNTLYIEGVPSDCTRREVSHIFRPFVGFREVRLVNKEPKHPGGDPIVLCF 77
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQ 237
V++ + Q+ +A+ +LQ K +
Sbjct: 78 VDFAEPTQSAIALDALQGYKFDEHD 102
>gi|47523538|ref|NP_999396.1| polypyrimidine tract-binding protein 1 [Sus scrofa]
gi|2500586|sp|Q29099.1|PTBP1_PIG RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I
gi|1122433|emb|CAA63597.1| polypyrimidine tract-binding protein [Sus scrofa]
Length = 557
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 109/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 284
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEAP-----------AP------- 169
L+ A A+GA +S PY G IP+A AP
Sbjct: 285 NQP-SLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAATVSVPNVHGALAPLAIPSAA 343
Query: 170 -----------------PNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 344 ARAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENA 403
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 404 LVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 436
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL F FG ++ K L +K + LV D + A
Sbjct: 362 NSVLLVSNLNPERVT----PQSL---FILFGVYCDVQRVKILFNKKENALVQMADGSQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 415 LAMSHLNGHKLHGKPVRITLSK---------------------HQNVQLPREGQED---- 449
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 450 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEEDLKILF 500
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 501 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
>gi|223973687|gb|ACN31031.1| unknown [Zea mays]
Length = 221
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 163 IPEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG--------IAF 212
+PE P PP+ N L+++ VP D T + F F GF+EVR+V +P + F
Sbjct: 109 MPEPPLPPDASNTLYIEGVPSDCTRREVSHIFRPFVGFREVRLVNKEPKHPGGDPIVLCF 168
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQ 237
V++ + Q+ +A+ +LQ K +
Sbjct: 169 VDFAEPTQSAIALDALQGYKFDEHD 193
>gi|413953430|gb|AFW86079.1| hypothetical protein ZEAMMB73_802063 [Zea mays]
Length = 262
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 163 IPEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG--------IAF 212
+PE P PP+ N L+++ VP D T + F F GF+EVR+V +P + F
Sbjct: 150 MPEPPLPPDASNTLYIEGVPSDCTRREVSHIFRPFVGFREVRLVNKEPKHPGGDPIVLCF 209
Query: 213 VEYGDEMQATVAMQSLQSLKI 233
V++ + Q+ +A+ +LQ K
Sbjct: 210 VDFAEPTQSAIALDALQGYKF 230
>gi|334326796|ref|XP_001375584.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Monodelphis
domestica]
Length = 557
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 107/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYSDPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 284
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
+ L+ A A+GA +S PY G IP+A
Sbjct: 285 -SQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 343
Query: 167 --------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP L + F + + V+++ K A
Sbjct: 344 AAAAAAGRIAIPGLTGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENA 403
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 404 LVQMADGNQAQLAMSHLNGQKLHGKPIRITLSK 436
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V Q L +F +G + + K L +K + LV D A
Sbjct: 362 NSVLLVSNLNPERVT----PQCLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE Q
Sbjct: 415 LAMSHLNGQKLHGKPIRITLSKHQT--------VQLPRE------------------GQE 448
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L+M F
Sbjct: 449 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEEDLKMLF 500
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A ++ L + +G+ L ++++K
Sbjct: 501 SSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSK 554
>gi|402903488|ref|XP_003914597.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Papio
anubis]
gi|380814966|gb|AFE79357.1| polypyrimidine tract-binding protein 1 isoform c [Macaca mulatta]
gi|384948418|gb|AFI37814.1| polypyrimidine tract-binding protein 1 isoform c [Macaca mulatta]
Length = 530
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 291
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 292 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 351
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 352 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 409
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 335 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 387
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE Q
Sbjct: 388 LAMSHLNGHKLHGKPIRITLSKHQN--------VQLPRE------------------GQE 421
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 422 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 473
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 474 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 527
>gi|395513379|ref|XP_003760903.1| PREDICTED: polypyrimidine tract-binding protein 1 [Sarcophilus
harrisii]
Length = 557
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 107/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYSDPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 284
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
+ L+ A A+GA +S PY G IP+A
Sbjct: 285 -SQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 343
Query: 167 --------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP L + F + + V+++ K A
Sbjct: 344 AAAAAAGRIAIPGLTGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENA 403
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 404 LVQMADGNQAQLAMSHLNGQKLHGKPIRITLSK 436
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V Q L +F +G + + K L +K + LV D A
Sbjct: 362 NSVLLVSNLNPERVT----PQCLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE Q
Sbjct: 415 LAMSHLNGQKLHGKPIRITLSKHQT--------VQLPRE------------------GQE 448
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L+M F
Sbjct: 449 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEDDLKMLF 500
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A ++ L + +G+ L ++++K
Sbjct: 501 SSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSK 554
>gi|334332915|ref|XP_001376108.2| PREDICTED: regulator of differentiation 1 [Monodelphis domestica]
Length = 582
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V ++ L Q +F +FGT+L I+ F T ++ QA L + D +A
Sbjct: 209 SPVLRIIVENLFYPVTLEVLYQ----IFSKFGTVLRIITF-TKNNQFQALLQYADPLNAH 263
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 264 YAKMTLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPSGDGQPSLDPT 320
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + IP
Sbjct: 321 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITTSAVTGRMAIPG 380
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
P P N++L V N+ P TP L + F + + V+++ K A V+ D QA +
Sbjct: 381 VPGVPGNSVLLVSNLNPDAITPHGLFILFGVYGDVQRVKIMFNKKENALVQMADANQAQL 440
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 441 AMNHLSGQRLYGKVLRATLSK 461
>gi|402896663|ref|XP_003911410.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Papio
anubis]
Length = 555
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 172 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 226
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 227 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 283
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 284 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 343
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 344 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 403
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 404 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 434
>gi|73987401|ref|XP_868641.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 8 [Canis
lupus familiaris]
Length = 531
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 292
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 293 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 352
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 410
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 336 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGSQAQ 388
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE Q
Sbjct: 389 LAMSHLNGHKLHGKPVRITLSKHQN--------VQLPRE------------------GQE 422
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 423 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEDDLKILF 474
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 475 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
>gi|255003744|ref|NP_001157262.1| polypyrimidine tract-binding protein 3 isoform 3 [Homo sapiens]
gi|114626182|ref|XP_528390.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 6 [Pan
troglodytes]
gi|397479185|ref|XP_003810908.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Pan
paniscus]
gi|51476645|emb|CAH18301.1| hypothetical protein [Homo sapiens]
Length = 555
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 172 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 226
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 227 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 283
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 284 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 343
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 344 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 403
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 404 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 434
>gi|14165466|ref|NP_114368.1| polypyrimidine tract-binding protein 1 isoform c [Homo sapiens]
gi|332850814|ref|XP_003316017.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Pan
troglodytes]
gi|131528|sp|P26599.1|PTBP1_HUMAN RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=57 kDa RNA-binding protein PPTB-1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I
gi|35768|emb|CAA43973.1| polypirimidine tract binding protein [Homo sapiens]
gi|35774|emb|CAA43056.1| polypyrimidine tract-binding protein (pPTB) [Homo sapiens]
gi|4096061|gb|AAC99798.1| PTB_HUMAN [Homo sapiens]
gi|13325140|gb|AAH04383.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|119581559|gb|EAW61155.1| polypyrimidine tract binding protein 1, isoform CRA_d [Homo
sapiens]
gi|261860774|dbj|BAI46909.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|410218530|gb|JAA06484.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
gi|410301206|gb|JAA29203.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 531
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 292
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 293 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 352
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 410
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 336 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 388
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE Q
Sbjct: 389 LAMSHLNGHKLHGKPIRITLSKHQN--------VQLPRE------------------GQE 422
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 423 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 474
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 475 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
>gi|38569466|ref|NP_005147.3| polypyrimidine tract-binding protein 3 isoform 1 [Homo sapiens]
gi|218511814|sp|O95758.2|PTBP3_HUMAN RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|119579504|gb|EAW59100.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Homo
sapiens]
gi|119579505|gb|EAW59101.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Homo
sapiens]
Length = 552
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 169 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 223
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 224 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 280
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 281 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 340
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 341 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 400
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 401 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 431
>gi|402896661|ref|XP_003911409.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Papio
anubis]
Length = 524
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 141 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 195
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 196 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 252
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 253 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 312
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 313 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 372
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 373 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 403
>gi|380801045|gb|AFE72398.1| regulator of differentiation 1 isoform 1, partial [Macaca mulatta]
Length = 456
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 73 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 127
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 128 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 184
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 185 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 244
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 245 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 304
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 305 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 335
>gi|349732186|ref|NP_001231825.1| polypyrimidine tract-binding protein 3 isoform 4 [Homo sapiens]
gi|332832555|ref|XP_001149256.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pan
troglodytes]
Length = 457
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 74 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 128
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 129 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 185
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 186 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 245
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 246 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 305
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 306 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 336
>gi|255003738|ref|NP_001157260.1| polypyrimidine tract-binding protein 3 isoform 2 [Homo sapiens]
gi|397479181|ref|XP_003810906.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pan
paniscus]
gi|410043017|ref|XP_003951545.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
gi|194380114|dbj|BAG63824.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 141 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 195
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 196 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 252
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 253 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 312
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 313 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 372
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 373 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 403
>gi|119581562|gb|EAW61158.1| polypyrimidine tract binding protein 1, isoform CRA_g [Homo
sapiens]
Length = 501
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 151 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 206 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 262
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 263 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 322
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 323 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 380
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 306 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 358
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI ++K +PRE Q
Sbjct: 359 LAMSHLNGHKLHGKPIRI--------TLSKHQNVQLPRE------------------GQE 392
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 393 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 444
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 445 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 498
>gi|30583817|gb|AAP36157.1| Homo sapiens polypyrimidine tract binding protein 1 [synthetic
construct]
gi|61369451|gb|AAX43339.1| polypyrimidine tract binding protein 1 [synthetic construct]
Length = 558
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 107/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 284
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
L+ A A+GA +S PY G IP+A
Sbjct: 285 SQP-SLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 343
Query: 167 --------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 344 AAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA 403
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 404 LVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 436
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 362 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 415 LAMSHLNGHKLHGKPIRITLSK---------------------HQNVQLPREGQED---- 449
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 450 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 500
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 501 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 554
>gi|402896665|ref|XP_003911411.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Papio
anubis]
Length = 521
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 138 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 192
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 193 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 249
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 250 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 309
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 310 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 369
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 370 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 400
>gi|119579506|gb|EAW59102.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_c [Homo
sapiens]
Length = 482
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 99 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 153
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 154 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 210
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 211 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 270
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 271 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 330
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 331 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 361
>gi|410043020|ref|XP_003951546.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
Length = 558
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 175 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 229
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 230 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 286
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 287 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 346
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 347 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 406
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 407 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 437
>gi|403266191|ref|XP_003925277.1| PREDICTED: polypyrimidine tract-binding protein 3 [Saimiri
boliviensis boliviensis]
Length = 558
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 175 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 229
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 230 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 286
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 287 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 346
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 347 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 406
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 407 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 437
>gi|355567525|gb|EHH23866.1| hypothetical protein EGK_07422, partial [Macaca mulatta]
Length = 558
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 175 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 229
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 230 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 286
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 287 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 346
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 347 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 406
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 407 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 437
>gi|349732190|ref|NP_001231826.1| polypyrimidine tract-binding protein 3 isoform 5 [Homo sapiens]
Length = 547
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 141 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 195
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 196 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 252
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 253 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 312
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 313 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 372
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 373 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 403
>gi|410043023|ref|XP_003951547.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
Length = 554
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 141 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 195
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 196 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 252
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 253 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 312
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 313 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 372
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 373 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 403
>gi|426362706|ref|XP_004048496.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2
[Gorilla gorilla gorilla]
gi|4514554|dbj|BAA75466.1| Rod1 [Homo sapiens]
Length = 521
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 138 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 192
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 193 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 249
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 250 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 309
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 310 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 369
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 370 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 400
>gi|426362704|ref|XP_004048495.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1
[Gorilla gorilla gorilla]
Length = 591
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 178 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 232
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 233 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 289
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 290 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 349
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 350 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 409
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 410 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 440
>gi|73987389|ref|XP_542215.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Canis
lupus familiaris]
Length = 557
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 44/266 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 295
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 296 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAG 350
Query: 167 -------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE 218
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 351 RIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 410
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 411 SQAQLAMSHLNGHKLHGKPVRITLSK 436
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 362 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGSQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 415 LAMSHLNGHKLHGKPVRITLSK---------------------HQNVQLPREGQED---- 449
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 450 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEDDLKILF 500
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 501 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
>gi|4506243|ref|NP_002810.1| polypyrimidine tract-binding protein 1 isoform a [Homo sapiens]
gi|332850812|ref|XP_001172084.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Pan
troglodytes]
gi|32354|emb|CAA47386.1| nuclear ribonucleoprotein [Homo sapiens]
gi|35772|emb|CAA46444.1| polypirimidine tract binding protein [Homo sapiens]
gi|12803183|gb|AAH02397.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|15489171|gb|AAH13694.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|30582477|gb|AAP35465.1| polypyrimidine tract binding protein 1 [Homo sapiens]
gi|61359435|gb|AAX41718.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|61359442|gb|AAX41719.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|119581558|gb|EAW61154.1| polypyrimidine tract binding protein 1, isoform CRA_c [Homo
sapiens]
gi|410218528|gb|JAA06483.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
gi|410301208|gb|JAA29204.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 557
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 107/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 284
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
L+ A A+GA +S PY G IP+A
Sbjct: 285 SQP-SLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 343
Query: 167 --------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 344 AAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA 403
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 404 LVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 436
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 362 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 415 LAMSHLNGHKLHGKPIRITLSK---------------------HQNVQLPREGQED---- 449
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 450 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 500
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 501 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 554
>gi|402903486|ref|XP_003914596.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Papio
anubis]
gi|380814964|gb|AFE79356.1| polypyrimidine tract-binding protein 1 isoform a [Macaca mulatta]
gi|384948416|gb|AFI37813.1| polypyrimidine tract-binding protein 1 isoform a [Macaca mulatta]
Length = 556
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDL-PSG 282
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
+ L+ A A+GA +S PY G IP+A
Sbjct: 283 DSQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 342
Query: 167 --------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 343 AAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA 402
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 403 LVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 435
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 361 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 413
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 414 LAMSHLNGHKLHGKPIRITLSK---------------------HQNVQLPREGQED---- 448
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 449 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 499
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 500 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 553
>gi|119581557|gb|EAW61153.1| polypyrimidine tract binding protein 1, isoform CRA_b [Homo
sapiens]
Length = 527
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 151 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 206 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDL-PSG 253
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
+ L+ A A+GA +S PY G IP+A
Sbjct: 254 DSQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 313
Query: 167 --------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 314 AAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA 373
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 374 LVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 406
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 332 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 384
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 385 LAMSHLNGHKLHGKPIRITLSK---------------------HQNVQLPREGQED---- 419
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 420 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 470
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 471 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 524
>gi|349732192|ref|NP_001231827.1| polypyrimidine tract-binding protein 3 isoform 6 [Homo sapiens]
gi|114626184|ref|XP_001149612.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 5 [Pan
troglodytes]
gi|397479183|ref|XP_003810907.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Pan
paniscus]
gi|27882560|gb|AAH44585.1| ROD1 protein [Homo sapiens]
gi|119579503|gb|EAW59099.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a [Homo
sapiens]
Length = 558
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 175 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 229
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 230 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 286
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 287 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 346
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 347 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 406
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 407 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 437
>gi|395824362|ref|XP_003785435.1| PREDICTED: polypyrimidine tract-binding protein 3 [Otolemur
garnettii]
Length = 534
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 46/274 (16%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 151 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 205
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 206 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 262
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------- 168
G + A G ++ YAGA G P I +P +P P
Sbjct: 263 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAP---TIGFPQATGLSVPAVPGALGPLAI 319
Query: 169 -----------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGI 210
P N++L V N+ P TP L + F + V+++ K
Sbjct: 320 TSSAVTGRMAIPGTGGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKEN 379
Query: 211 AFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 380 ALVQMADANQAQLAMNHLSGQRLYGKVLRATLSK 413
>gi|355753108|gb|EHH57154.1| hypothetical protein EGM_06734, partial [Macaca fascicularis]
Length = 539
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 156 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 210
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 211 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 267
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 268 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 327
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 328 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 387
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 388 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 418
>gi|395740824|ref|XP_002820149.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Pongo
abelii]
Length = 555
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 182 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 236
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 237 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 293
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + IP
Sbjct: 294 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPG 353
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 354 ASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 413
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 414 AMNHLSGQRLYGKVLRATLSK 434
>gi|326934420|ref|XP_003213288.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Meleagris
gallopavo]
Length = 526
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 107/262 (40%), Gaps = 37/262 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 151 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPMSAQ 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 206 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPPLDQTMAA 265
Query: 131 QAGM-GLNPA--YAGAYGATPPLSQIPYPGG------------------------AKSVI 163
G G+ PA YAGA PP IP G + I
Sbjct: 266 AFGAPGIIPASPYAGA--GFPPTFAIPQAAGLTVQNVHGALAPLAIPAAAAAAAAGRIAI 323
Query: 164 PEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQAT 222
P N++L V N+ P TP L + F + + V+++ K A V+ D QA
Sbjct: 324 PGLAGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQ 383
Query: 223 VAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 384 LAMSHLNGQKLHGKPIRITLSK 405
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V Q L +F +G + + K L +K + LV D A
Sbjct: 331 NSVLLVSNLNPERVT----PQCLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 383
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE ++DQ
Sbjct: 384 LAMSHLNGQKLHGKPIRITLSKHQT--------VQLPRE----------GQEDQ------ 419
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P L+M F
Sbjct: 420 --GLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSIAEEDLKMLF 469
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A ++ L + +G+ L ++++K
Sbjct: 470 SSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSK 523
>gi|395740821|ref|XP_002820150.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Pongo
abelii]
Length = 524
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 151 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 206 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 262
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + IP
Sbjct: 263 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPG 322
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 323 ASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 382
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 383 AMNHLSGQRLYGKVLRATLSK 403
>gi|410949959|ref|XP_003981684.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1 [Felis catus]
Length = 508
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 44/266 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 295
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 296 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAG 350
Query: 167 -------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE 218
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 351 RIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADG 410
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 411 SQAQLAMSHLNGHKLHGKPVRITLSK 436
>gi|25058871|gb|AAH39896.1| Similar to ROD1 regulator of differentiation 1 (S. pombe), partial
[Homo sapiens]
Length = 618
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 212 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 266
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 267 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 323
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 324 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 383
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 384 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 443
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 444 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 474
>gi|90085391|dbj|BAE91436.1| unnamed protein product [Macaca fascicularis]
Length = 352
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 69 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 123
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 124 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 180
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 181 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 240
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 241 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 300
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 301 QMADANQARLAMNHLSGQRLYGKVLRATLSK 331
>gi|27806103|ref|NP_776867.1| polypyrimidine tract-binding protein 1 [Bos taurus]
gi|426229471|ref|XP_004008814.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Ovis
aries]
gi|75073578|sp|Q8WN55.1|PTBP1_BOVIN RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB
gi|17298537|gb|AAL38169.1|AF445640_1 polypyrimidine-tract binding protein [Bos taurus]
gi|296485353|tpg|DAA27468.1| TPA: polypyrimidine tract-binding protein 1 [Bos taurus]
Length = 531
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 292
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 293 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 352
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 353 SLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 410
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 336 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KVLFNKKENALVQMADGSQAQ 388
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K +S +PRE Q
Sbjct: 389 LAMSHLNGHKLHGKPVRITLSKHQS--------VQLPRE------------------GQE 422
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 423 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEDDLKILF 474
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 475 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
>gi|426229469|ref|XP_004008813.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Ovis
aries]
Length = 557
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 44/266 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 295
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 296 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAG 350
Query: 167 -------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE 218
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 351 RIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADG 410
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 411 SQAQLAMSHLNGHKLHGKPVRITLSK 436
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 362 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KVLFNKKENALVQMADGSQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K +S +PRE ++DQ
Sbjct: 415 LAMSHLNGHKLHGKPVRITLSKHQS--------VQLPRE----------GQEDQ------ 450
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 451 --GLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEDDLKILF 500
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 501 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
>gi|367000019|ref|XP_003684745.1| hypothetical protein TPHA_0C01550 [Tetrapisispora phaffii CBS 4417]
gi|357523042|emb|CCE62311.1| hypothetical protein TPHA_0C01550 [Tetrapisispora phaffii CBS 4417]
Length = 116
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P +T+YINNL++ + L+ +L +F +G +++I + T + +GQA++ K+V A
Sbjct: 31 PKSTLYINNLSDGIGSKNLRTNLFLLFSVYGEVIKI-SVNTKRQRGQAFIRMKNVDQANL 89
Query: 74 AVEKMQGFPFYDKPMRIQYA 93
A + G F+DK ++I+++
Sbjct: 90 AKVSLNGEIFFDKQLQIEFS 109
>gi|348538507|ref|XP_003456732.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Oreochromis
niloticus]
Length = 556
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 38/238 (15%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G++L I+ FK ++ QA + F+ V A A + G Y ++I+YA
Sbjct: 196 LYTVCNPIGSVLRIVIFK--RNGIQAMVEFESVQCAQKAKAALNGADIYAGCCTLKIEYA 253
Query: 94 K-TKSDIIAKADGTF---VPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAG--AYGA- 146
+ T+ ++I + ++ P R+ +GK R+ QA +G +P+ G YG
Sbjct: 254 RPTRLNVIKNDNESWDYTKPYLVRRDVHNRGKGRQ-----RQAILGEHPSSYGDNGYGPP 308
Query: 147 ------------------TPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMA 187
P + P P + S AP+ ++ V + P
Sbjct: 309 CPLLPLPGNSRYKLTSLDVPDMVSYPLPQSSSSYSGHAPS---SVAMVSGLHPSKMNCTR 365
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ F + ++V+ +++ PG A VE GDE A+ L S+K+ ++L + +K+
Sbjct: 366 IFNLFCLYGNIEKVKFMKSVPGTALVEMGDEYAVDRAITHLNSIKVFGKRLNVCVSKQ 423
>gi|187608032|ref|NP_001120518.1| polypyrimidine tract binding protein 3 [Xenopus (Silurana)
tropicalis]
gi|170287806|gb|AAI61422.1| LOC100145652 protein [Xenopus (Silurana) tropicalis]
Length = 519
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 35/259 (13%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V + + LH +F +FGT+++I+ F T ++ QA L + D +A
Sbjct: 148 SPVLRIIVENLFYPVTL----EVLHQIFSKFGTVIKIITF-TKNNQFQALLQYADPMNAH 202
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI+++K S ++ D + R+ + G +
Sbjct: 203 HAKVALDGQNIYNACCTLRIEFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLDTT 259
Query: 130 NQAGMG----LNPAYAGAYGATP----PLSQIPYPG--------------GAKSVIPEAP 167
A G ++ YAGA G P P + + PG + IP
Sbjct: 260 MAAAFGAPGIISSPYAGAAGFAPAIGFPQAGLSVPGVPGLGPLALTTSAITGRMAIPGMT 319
Query: 168 A-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM 225
A P +++L V N+ P P L + F + + V+++ K A V+ D QA AM
Sbjct: 320 AIPGHSVLLVSNLNPDAILPHGLFILFGVYGDVQRVKILFNKKENALVQMTDATQAQFAM 379
Query: 226 QSLQSLKIGQQQLLITYAK 244
L ++ + L IT +K
Sbjct: 380 SHLNGQRLHGRVLRITLSK 398
>gi|297685129|ref|XP_002820148.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pongo
abelii]
Length = 558
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 185 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 239
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 240 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 296
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + IP
Sbjct: 297 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPG 356
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 357 ASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 416
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 417 AMNHLSGQRLYGKVLRATLSK 437
>gi|417411514|gb|JAA52191.1| Putative polypyrimidine tract-binding protein, partial [Desmodus
rotundus]
Length = 541
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 40/272 (14%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
+ N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 157 LTNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 211
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 212 LLQYADPLNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 268
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------- 159
G A G ++ YAGA G P + +P GA
Sbjct: 269 TGDGHPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTLAS 328
Query: 160 -----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
+ IP A P N++L V N+ P TP L + F + V+++ K A
Sbjct: 329 SAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENAL 388
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L ++ + L T +K
Sbjct: 389 VQMADANQAQLAMNHLSGQRLYGKVLRATLSK 420
>gi|432091564|gb|ELK24589.1| Regulator of differentiation 1 [Myotis davidii]
Length = 524
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 151 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAQ 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G
Sbjct: 206 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGHPSLESP 262
Query: 130 NQAGMG----LNPAYAGAYGATPPL-----SQIPYPG--GA-------------KSVIPE 165
A G ++ YAGA G P + + + PG GA + IP
Sbjct: 263 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPGVPGALGPLALTSSAVTGRMAIPG 322
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 323 AGGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 382
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 383 AMNHLNGQRLYGKVLRATLSK 403
>gi|344230515|gb|EGV62400.1| hypothetical protein CANTEDRAFT_109340 [Candida tenuis ATCC 10573]
Length = 126
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF-KTLKHKGQAWLVFKDVASATA 73
+ T+YI NLN+K+ + + +L+ + FG +++I+ K+ + +GQA +VF ++ A
Sbjct: 28 SQTLYIQNLNDKISPETTRANLYLLCTSFGDVIDIIIKPKSKRMRGQAHVVFSNITEAQV 87
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKAD 104
A+ ++Q F+ K ++ +A KS +I + +
Sbjct: 88 ALTRLQEQKFFGKSIKAAFAHKKSKLIKRIE 118
>gi|344271491|ref|XP_003407571.1| PREDICTED: regulator of differentiation 1 [Loxodonta africana]
Length = 581
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 109/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 208 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 262
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 263 YARMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 319
Query: 130 NQAGMG----LNPAYAGAYGATPP--------LSQIPYPGG------------AKSVIPE 165
A G ++ YAGA G P LS PG + IP
Sbjct: 320 MAAAFGAPGIISSPYAGAAGFGPAIGFPQAAGLSVSAVPGALGPLAITSSAVTGRMTIPG 379
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 380 AGGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 439
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 440 AMNHLSGQRLYGKVLRATLSK 460
>gi|338720441|ref|XP_003364168.1| PREDICTED: regulator of differentiation 1 isoform 2 [Equus
caballus]
Length = 457
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 109/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V ++ LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 84 SPVLRIIIENLFYPVTLE----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAH 138
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 139 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 195
Query: 130 NQAGMG----LNPAYAGAYGATPP--------LSQIPYPGG------------AKSVIPE 165
A G ++ YAGA G P LS PG + IP
Sbjct: 196 MAAAFGAPGIISSPYAGAAGFAPAIGFPQGTGLSVQTVPGALGPLAVTSSAVTGRMAIPG 255
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 256 ASGIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 315
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 316 AMNHLSGQRLYGKVLRATLSK 336
>gi|410084028|ref|XP_003959591.1| hypothetical protein KAFR_0K01000 [Kazachstania africana CBS
2517]
gi|372466183|emb|CCF60456.1| hypothetical protein KAFR_0K01000 [Kazachstania africana CBS
2517]
Length = 93
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILA-FKTLKHKGQAWLVFKDVASATAAV 75
T+Y+NNLN KV +L+ +L+ +F +G +L++ F+ K +GQA++ K V A A+
Sbjct: 11 TLYVNNLNTKVNSKKLRVNLYLLFSIYGEVLKVSTNFR--KERGQAFITMKGVDDANLAL 68
Query: 76 EKMQGFPFYDKPMRIQYAKTKS 97
+ F+DK + ++++K +
Sbjct: 69 LSLNDEMFFDKKLHVEFSKNDT 90
>gi|355717047|gb|AES05805.1| ROD1 regulator of differentiation 1 [Mustela putorius furo]
Length = 497
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 125 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 179
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 180 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 236
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + IP
Sbjct: 237 MAAAFGAPGIISSPYAGAAGFAPAIGFHQATGLSVPAVPGALGPLTIASSAVTGRMAIPG 296
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 297 AGGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQL 356
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 357 AMNHLSGQRLYGKVLRATLSK 377
>gi|193786069|dbj|BAG50959.1| unnamed protein product [Homo sapiens]
Length = 457
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 74 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 128
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 129 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLISLNVKYNNDKS---RDFTRLDLPT 185
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 186 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 245
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 246 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 305
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 306 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 336
>gi|449508136|ref|XP_002190438.2| PREDICTED: polypyrimidine tract-binding protein 2 [Taeniopygia
guttata]
Length = 537
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 105/256 (41%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L F D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQFGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKQALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 281 DGQPTLDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 340
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 341 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHL 400
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 401 NGQKMYGKIIRVTLSK 416
>gi|344244560|gb|EGW00664.1| Regulator of differentiation 1 [Cricetulus griseus]
Length = 523
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 150 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAH 204
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 205 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 261
Query: 130 NQAGMG----LNPAYAGAYGATP--------------------PLSQIPYPGGAKSVIPE 165
A G ++ YAGA G P PL+ + IP
Sbjct: 262 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTLTSSAVTGRMAIPG 321
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 322 ASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQL 381
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 382 AMNHLSGQRLYGKVLRATLSK 402
>gi|330794853|ref|XP_003285491.1| hypothetical protein DICPUDRAFT_149370 [Dictyostelium purpureum]
gi|325084582|gb|EGC38007.1| hypothetical protein DICPUDRAFT_149370 [Dictyostelium purpureum]
Length = 352
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 48/259 (18%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFK 66
N I+ NN ++I L + +DQLK A+F G ILE + T +GQA + +
Sbjct: 118 NAIASNN-VFIKGLPTEYTMDQLK----ALFSPHGEILESKILTDISTSASRGQALVRYG 172
Query: 67 DVASATAAVEKMQGFPFYD--KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRK 124
DV SA+ AV+++ G+ D KP+ +++A+ + K+ + KR+
Sbjct: 173 DVQSASNAVKELNGYIIQDPDKPLIVKFAE---------------NDEEKKQSKLNSKRQ 217
Query: 125 DQHDANQAGMGLNPAYAGAYGATPPLSQI-PYPGGAKSVIPEAPA-------------PP 170
+ M +P Y A P++Q+ PY ++ +P P
Sbjct: 218 KLQQKQRLNMRFSP-YPSPIAA--PITQMYPYYQTMPTLPTLSPIMQPPILTTKTITQDP 274
Query: 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMV-----EAKPGIAFVEYGDEMQATVAM 225
N L+V N+P D L FS V++V + G FV + A+
Sbjct: 275 TN-LYVYNLPSDADDALLYRLFSPSGAIASVKIVRDPNTQVCKGYGFVRMLSLPDSYAAI 333
Query: 226 QSLQSLKIGQQQLLITYAK 244
S+ +++G + + +++ K
Sbjct: 334 NSINGIQVGGKTISVSFKK 352
>gi|431918462|gb|ELK17686.1| Regulator of differentiation 1 [Pteropus alecto]
Length = 523
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 150 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAQ 204
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G
Sbjct: 205 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGHPSLEPP 261
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + IP
Sbjct: 262 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPG 321
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 322 ASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 381
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 382 AMNHLSGQRLYGKVLRATLSK 402
>gi|345777899|ref|XP_538790.3| PREDICTED: regulator of differentiation 1 [Canis lupus familiaris]
Length = 610
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 237 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 291
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 292 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 348
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + IP
Sbjct: 349 MAAAFGAPGIISSPYAGAAGFAPAIGFHQATGISVPAVPGALGPLTITSSAVTGRMAIPG 408
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 409 AGGLPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 468
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 469 AMNHLSGQRLYGKVLRATLSK 489
>gi|338720439|ref|XP_001490810.2| PREDICTED: regulator of differentiation 1 isoform 1 [Equus
caballus]
Length = 523
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 109/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 150 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAH 204
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 205 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 261
Query: 130 NQAGMG----LNPAYAGAYGATPP--------LSQIPYPGG------------AKSVIPE 165
A G ++ YAGA G P LS PG + IP
Sbjct: 262 MAAAFGAPGIISSPYAGAAGFAPAIGFPQGTGLSVQTVPGALGPLAVTSSAVTGRMAIPG 321
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 322 ASGIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 381
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 382 AMNHLSGQRLYGKVLRATLSK 402
>gi|357148760|ref|XP_003574884.1| PREDICTED: uncharacterized protein LOC100836479 [Brachypodium
distachyon]
Length = 296
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 164 PEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PG-----IAFV 213
PE P PP+ N L+++ +P + T + F F GF+EVR+V + PG + FV
Sbjct: 187 PEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFV 246
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQ 237
++ QAT+A+++LQ K +
Sbjct: 247 DFDSPAQATIALEALQGYKFDEHD 270
>gi|387017724|gb|AFJ50980.1| Polypyrimidine tract-binding protein 1-like [Crotalus adamanteus]
Length = 556
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 106/272 (38%), Gaps = 57/272 (20%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 284
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
L+ A A+GA +S PY G IP+A
Sbjct: 285 NQP-SLDQTMAAAFGAPGIISASPYAGAGFPPAFAIPQAGLSVPNVHGALAPLAIPSAAA 343
Query: 167 -------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
N++L V N+ P TP L + F + + V+++ K A
Sbjct: 344 AAAAAGRIAIPGLTGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENAL 403
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D Q+ +AM L K+ + + IT +K
Sbjct: 404 VQMADGNQSQLAMSHLNGQKLHGKPIRITLSK 435
>gi|254565225|ref|XP_002489723.1| RNA-binding protein that carries poly(A)+ mRNA from the nucleus
into the cytoplasm [Komagataella pastoris GS115]
gi|238029519|emb|CAY67442.1| RNA-binding protein that carries poly(A)+ mRNA from the nucleus
into the cytoplasm [Komagataella pastoris GS115]
gi|328350141|emb|CCA36541.1| Polyadenylate-binding protein 1-like [Komagataella pastoris CBS
7435]
Length = 329
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
LFV+ +P D P LQ F +F KEV+++ G AFVEY + A+ A+++L +
Sbjct: 9 LFVRPLPGDVRPEELQDLFGKFGPIKEVKIMR---GYAFVEYEEGADASAALENLNNTPF 65
Query: 234 GQQQLLITYAKK 245
G Q L I +AK+
Sbjct: 66 GDQDLQIEFAKE 77
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 30 DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89
D + L +F +FG I E+ + G A++ +++ A A+AA+E + PF D+ ++
Sbjct: 17 DVRPEELQDLFGKFGPIKEVKIMR-----GYAFVEYEEGADASAALENLNNTPFGDQDLQ 71
Query: 90 IQYAKTK 96
I++AK K
Sbjct: 72 IEFAKEK 78
>gi|85003003|gb|ABC68595.1| polypyrimidine tract binding protein [Paracentrotus lividus]
Length = 618
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 118/272 (43%), Gaps = 37/272 (13%)
Query: 4 EVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWL 63
+V + G ++ + + N+ ++ +D +LH +F+++GT+L I+ F + QA +
Sbjct: 233 KVPDTGGGVNTILRVIVENVTYQITVD----TLHEIFRKYGTVLRIVTF-IKSGQFQALV 287
Query: 64 VFKDVASATAAVEKMQGFPFYDKP--MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGK 121
F D + A A ++ G Y+ +RI ++K +++ K + + G
Sbjct: 288 QFADASQAAVAKLELDGKNIYNNCCQLRIDFSKL-TNLSVKYNNEKSRDYTCDLPQGDGL 346
Query: 122 KRKDQHDANQAGMG-----LNPAYAGA---YGATPPLSQIPY-----PG--GAKSVIPEA 166
D A G+G ++P AG + T P+S Y PG S +P A
Sbjct: 347 TGVDPSTAAMLGLGSAAGLISPYTAGHGLPFAGTTPVSLAGYHHAGVPGFPAGLSALPHA 406
Query: 167 PAPPNN-------------ILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
A ++ V N+ P TP AL F + + V+++ K A
Sbjct: 407 AAAAQGMRLPGMYMQSGTAVILVSNLTPELVTPQALFTLFGVYGDVQRVKILYEKRDNAL 466
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
++ D QA +AM+ L +K+ +Q+ +T +K
Sbjct: 467 IQMSDPNQAQLAMKHLSGVKLYGKQIRVTASK 498
>gi|395831594|ref|XP_003788880.1| PREDICTED: polypyrimidine tract-binding protein 1 [Otolemur
garnettii]
Length = 582
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 45/263 (17%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 213 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 267
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G + D
Sbjct: 268 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSL-DQ 323
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA----------------------- 166
A +P YAGA PP IP G +P
Sbjct: 324 TMAAAFASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAGRIA 378
Query: 167 ----PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 379 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADANQA 438
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 439 QLAMSHLSGHKLHGKPIRITLSK 461
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 45/235 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 387 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADANQAQ 439
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 440 LAMSHLSGHKLHGKPIRITLSK---------------------HQNVQLPREGQED---- 474
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 475 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEEDLKILF 525
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAKK 245
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 526 SSNGGVVKGFKFFQNDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 580
>gi|354486792|ref|XP_003505562.1| PREDICTED: regulator of differentiation 1-like [Cricetulus griseus]
Length = 643
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 270 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAH 324
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 325 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 381
Query: 130 NQAGMG----LNPAYAGAYGATP--------------------PLSQIPYPGGAKSVIPE 165
A G ++ YAGA G P PL+ + IP
Sbjct: 382 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTLTSSAVTGRMAIPG 441
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 442 ASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQL 501
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 502 AMNHLSGQRLYGKVLRATLSK 522
>gi|326499832|dbj|BAJ90751.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326501246|dbj|BAJ98854.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 164 PEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PG-----IAFV 213
PE P PP+ N L+++ +P + T + F F GF+EVR+V + PG + FV
Sbjct: 174 PEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFV 233
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQ 237
++ QAT+A+++LQ K +
Sbjct: 234 DFDSPAQATIALEALQGYKFDEHD 257
>gi|348556107|ref|XP_003463864.1| PREDICTED: regulator of differentiation 1-like [Cavia porcellus]
Length = 688
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 315 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 369
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 370 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPSGDGQPSLEPP 426
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + IP
Sbjct: 427 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLALTSSAITGRMAIPG 486
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 487 ASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQL 546
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 547 AMNHLSGQRLYGKVLRATLSK 567
>gi|222634881|gb|EEE65013.1| hypothetical protein OsJ_19964 [Oryza sativa Japonica Group]
Length = 265
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 163 IPEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMV--EAK-PG-----IAF 212
+PE P PP+ N LF++ +P D + F F GF+EVR+V EA+ PG + F
Sbjct: 152 MPEPPLPPDASNTLFIEGIPTDCARREVSHIFRPFVGFREVRLVSKEARHPGGDPILLCF 211
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQ 237
V++ QA +AM +LQ K +
Sbjct: 212 VDFETASQAAIAMDALQGYKFDEHD 236
>gi|402903490|ref|XP_003914598.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Papio
anubis]
Length = 549
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 45/263 (17%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G + D
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSL-DQ 290
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA----------------------- 166
A +P YAGA PP IP G +P
Sbjct: 291 TMAAAFASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAGRIA 345
Query: 167 ----PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 346 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQA 405
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 406 QLAMSHLNGHKLHGKPIRITLSK 428
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 354 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 406
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 407 LAMSHLNGHKLHGKPIRITLSK---------------------HQNVQLPREGQED---- 441
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 442 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 492
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 493 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 546
>gi|14165464|ref|NP_114367.1| polypyrimidine tract-binding protein 1 isoform b [Homo sapiens]
gi|332850820|ref|XP_003316018.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Pan
troglodytes]
gi|35770|emb|CAA46443.1| polypirimidine tract binding protein [Homo sapiens]
gi|119581556|gb|EAW61152.1| polypyrimidine tract binding protein 1, isoform CRA_a [Homo
sapiens]
gi|410218532|gb|JAA06485.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 550
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 45/263 (17%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G + D
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSL-DQ 291
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA----------------------- 166
A +P YAGA PP IP G +P
Sbjct: 292 TMAAAFASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAGRIA 346
Query: 167 ----PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 347 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQA 406
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 407 QLAMSHLNGHKLHGKPIRITLSK 429
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 355 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 407
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 408 LAMSHLNGHKLHGKPIRITLSK---------------------HQNVQLPREGQED---- 442
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 443 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 493
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 494 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 547
>gi|119581561|gb|EAW61157.1| polypyrimidine tract binding protein 1, isoform CRA_f [Homo
sapiens]
Length = 520
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 45/263 (17%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 151 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G + D
Sbjct: 206 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSL-DQ 261
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA----------------------- 166
A +P YAGA PP IP G +P
Sbjct: 262 TMAAAFASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAGRIA 316
Query: 167 ----PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 317 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQA 376
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 377 QLAMSHLNGHKLHGKPIRITLSK 399
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 325 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 377
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 378 LAMSHLNGHKLHGKPIRITLSK---------------------HQNVQLPREGQED---- 412
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 413 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 463
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 464 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 517
>gi|440893263|gb|ELR46101.1| Polypyrimidine tract-binding protein 1, partial [Bos grunniens
mutus]
Length = 548
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 44/266 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 172 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 226
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 227 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAA 286
Query: 131 QAG----MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-------------------- 166
G M +P YAGA PP IP G +P
Sbjct: 287 AFGAPGIMSASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAG 341
Query: 167 -------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE 218
N++L V N+ P TP +L + F + + V+++ K A V+ D
Sbjct: 342 RIAIPGLAGAGNSVLLVSNLNPEVLTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADG 401
Query: 219 MQATVAMQSLQSLKIGQQQLLITYAK 244
QA +AM L K+ + + IT +K
Sbjct: 402 SQAQLAMSHLNGHKLHGKPVRITLSK 427
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 43/233 (18%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASATA 73
N+ + ++NLN +V Q ++F FG ++ K L +K + LV D + A
Sbjct: 353 NSVLLVSNLNPEVLTPQ------SLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQL 406
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ + G + KP+RI +K +S +PRE ++DQ
Sbjct: 407 AMSHLNGHKLHGKPVRITLSKHQS--------VQLPRE----------GQEDQ------- 441
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
GL Y + PL + PG + PP+ L + N+P + L++ FS
Sbjct: 442 -GLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEDDLKILFS 492
Query: 194 QFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 493 SNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 545
>gi|73987397|ref|XP_868637.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 6 [Canis
lupus familiaris]
Length = 550
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 45/263 (17%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G + D
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSL-DQ 291
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA----------------------- 166
A +P YAGA PP IP G +P
Sbjct: 292 TMAAAFASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAGRIA 346
Query: 167 ----PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 347 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQA 406
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 407 QLAMSHLNGHKLHGKPVRITLSK 429
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 355 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGSQAQ 407
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 408 LAMSHLNGHKLHGKPVRITLSK---------------------HQNVQLPREGQED---- 442
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 443 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEDDLKILF 493
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 494 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 547
>gi|242091796|ref|XP_002436388.1| hypothetical protein SORBIDRAFT_10g001660 [Sorghum bicolor]
gi|241914611|gb|EER87755.1| hypothetical protein SORBIDRAFT_10g001660 [Sorghum bicolor]
Length = 266
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 163 IPEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG--------IAF 212
+PE P PP+ N L+++ +P T + F F GF+EVR+V +P + F
Sbjct: 153 MPEPPLPPDASNTLYIEGIPTGCTRREVSHIFRPFVGFREVRLVNKEPKHPGGDPIVLCF 212
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQ 237
V++ + Q+ +AM++LQ K +
Sbjct: 213 VDFAEPTQSAIAMEALQGYKFDEHD 237
>gi|351710810|gb|EHB13729.1| Regulator of differentiation 1, partial [Heterocephalus glaber]
Length = 539
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 109/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 166 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVNAH 220
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 221 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPSGDGQPSLEPP 277
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ Y GA G P + +P GA + IP
Sbjct: 278 MAAAFGAPGIISSPYTGAAGFAPAIGFPQATGLSVPAVPGALGPLTLTSSAITGRMAIPG 337
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 338 ASGVPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADAHQAQL 397
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 398 AMNHLSGQRLYGKVLRATLSK 418
>gi|327263703|ref|XP_003216657.1| PREDICTED: regulator of differentiation 1-like [Anolis
carolinensis]
Length = 558
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 43/259 (16%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77
I + NL V ++ L Q +F +FGT+L+I+ F T ++ QA L + D +A A
Sbjct: 190 IIVENLFYPVTLEVLYQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPLNAHYARMA 244
Query: 78 MQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM 134
+ G Y+ +RI ++K S ++ D + R+ + G + A
Sbjct: 245 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPSGDGQPSLEPTMAAAF 301
Query: 135 G----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA---------------------- 168
G ++ YAGA G P I +P A + P+
Sbjct: 302 GTPGIISSPYAGAAGFAP---AIGFPQAAGLSVQGVPSALGPLAITTSTMTGRMAIPGVH 358
Query: 169 --PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM 225
P N++L V N+ P TP L + F + V+++ K A V+ D QA +AM
Sbjct: 359 GMPGNSVLLVSNLNPDAITPDGLFILFGVYGDVHRVKIMFNKKENALVQMADATQAQLAM 418
Query: 226 QSLQSLKIGQQQLLITYAK 244
L K+ + L +T +K
Sbjct: 419 NHLNGQKLYGKMLRVTLSK 437
>gi|441622594|ref|XP_003264050.2| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 3 isoform 1 [Nomascus leucogenys]
Length = 555
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 46/274 (16%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL + + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 172 SNEGTVLPGQSPVLXIIIENLFYRGTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 226
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 227 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 283
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------- 168
G + A G ++ YAGA G P I +P +P P
Sbjct: 284 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAP---AIGFPQATGLSVPAVPGALGPLTI 340
Query: 169 -----------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGI 210
P N++L V N+ P TP L + F + V+++ K
Sbjct: 341 TSSAVTGRMAIPGAGGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKEN 400
Query: 211 AFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 401 ALVQMADANQAQLAMNHLSGQRLYGKVLRATLSK 434
>gi|426229473|ref|XP_004008815.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Ovis
aries]
Length = 550
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 108/263 (41%), Gaps = 45/263 (17%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G + D
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSL-DQ 291
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA----------------------- 166
A +P YAGA PP IP G +P
Sbjct: 292 TMAAAFASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAAAAGRIA 346
Query: 167 ----PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
N++L V N+ P TP +L + F + + V+++ K A V+ D QA
Sbjct: 347 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQA 406
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 407 QLAMSHLNGHKLHGKPVRITLSK 429
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 355 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KVLFNKKENALVQMADGSQAQ 407
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K +S +PRE ++DQ
Sbjct: 408 LAMSHLNGHKLHGKPVRITLSKHQS--------VQLPRE----------GQEDQ------ 443
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 444 --GLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEDDLKILF 493
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 494 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 547
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 97/237 (40%), Gaps = 62/237 (26%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL--KHKGQAWLVFKDVASATA 73
N +Y+ NL+E V ++L++ VF++FG + ++ K K KG ++ ++D +A
Sbjct: 209 NNVYVKNLHESVTEEKLRE----VFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGK 264
Query: 74 AVEKMQGFP-FYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
+VE++ G+ DK + A+ KS+ A+ F ERR+R E+
Sbjct: 265 SVEELDGYDKIEDKAWVVCRAQKKSEREAELKAKF-DAERRERMEK-------------- 309
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
AGA L+++N+ L+ F
Sbjct: 310 -------MAGAN-----------------------------LYIKNLEDTVDDAKLRELF 333
Query: 193 SQFPGFKEVRMVE----AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
++F R++ A G AFV + +AT A+ + GQ+ L + A++
Sbjct: 334 AEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQR 390
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK--HKGQAWLVFKDVASATAA 74
+YI NL + V +L++ +F +FGTI + +G A++ F AT A
Sbjct: 314 NLYIKNLEDTVDDAKLRE----LFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRA 369
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE 111
V +M G KP+ + A+ K D + F R+
Sbjct: 370 VTEMNGKMAGQKPLYVALAQRKEDRRLRLQAQFAQRQ 406
>gi|50303957|ref|XP_451928.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641060|emb|CAH02321.1| KLLA0B08976p [Kluyveromyces lactis]
Length = 305
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 157 GGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216
K V PP+++L VQN+P D T L+ F GFKEVR+V + + FVEY
Sbjct: 218 SSTKKVFDIVGNPPHHVLLVQNLPKDVTQQELEKLFVS-DGFKEVRLVSVR-NLCFVEYD 275
Query: 217 DEMQATVAMQSL 228
AT +++L
Sbjct: 276 STANATKVVETL 287
>gi|310798962|gb|EFQ33855.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 419
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 37/247 (14%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
++ P +I++ +L +V L A F + + + + +G ++ F D
Sbjct: 146 DDRGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFTDEQ 205
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A+ +MQG ++PMRI T P+ R G + QH
Sbjct: 206 DQQRALVEMQGVYCGNRPMRIS--------------TATPKNR-----NHGGPYQQQHHG 246
Query: 130 NQ-AGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA--------PPNNILFVQNVP 180
NQ GL P G YG P GGA P P N +FV +
Sbjct: 247 NQMMAPGLPPHQQGFYGVPSPAQY----GGAYGAPYNPPGQQMNQFTDPNNTTVFVGGLS 302
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238
T L+ FF GF E+ V+ P G FV++ A +A+ +Q IG ++
Sbjct: 303 GYVTEDELRSFFQ---GFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQGYPIGNSRV 359
Query: 239 LITYAKK 245
+++ +
Sbjct: 360 RLSWGRS 366
>gi|293331463|ref|NP_001168957.1| uncharacterized protein LOC100382777 [Zea mays]
gi|223974013|gb|ACN31194.1| unknown [Zea mays]
Length = 287
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 164 PEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PG-----IAFV 213
PE P PP+ + L+++ +P + T + F F GF+EVR+V + PG + FV
Sbjct: 178 PEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFV 237
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQ 237
++ + QAT+A+++LQ K + +
Sbjct: 238 DFDNPAQATIALEALQGYKFDEHE 261
>gi|332255809|ref|XP_003277021.1| PREDICTED: polypyrimidine tract-binding protein 1 [Nomascus
leucogenys]
Length = 505
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 37/252 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 150 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 204
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 205 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 253
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA-----------------PAPPNNI 173
+ L+ A A+G +P GA + + N++
Sbjct: 254 -SQPSLDQTMAAAFGKRTASLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSV 312
Query: 174 LFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ P TP +L + F + + V+++ K A V+ D QA +AM L K
Sbjct: 313 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 372
Query: 233 IGQQQLLITYAK 244
+ + + IT +K
Sbjct: 373 LHGKPIRITLSK 384
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 310 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 362
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI ++K +PRE Q
Sbjct: 363 LAMSHLNGHKLHGKPIRI--------TLSKHQNVQLPRE------------------GQE 396
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 397 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 448
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 449 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 502
>gi|218197575|gb|EEC80002.1| hypothetical protein OsI_21654 [Oryza sativa Indica Group]
Length = 232
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPG--------IAFVEYGDEMQAT 222
+NILFV +P D T + F F GFK++R+V +P + FVE+ D A
Sbjct: 127 SNILFVDGLPTDCTRREVAHLFRPFVGFKDIRLVHKEPRHSSDRAYVLCFVEFSDAKCAI 186
Query: 223 VAMQSLQSLKIGQQQ 237
AM++LQ + +++
Sbjct: 187 TAMEALQEYRFDERK 201
>gi|426219707|ref|XP_004004060.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Ovis
aries]
Length = 526
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 39/263 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA L + D +A
Sbjct: 151 SPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPLNAH 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 206 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 262
Query: 130 NQAGMG----LNPAYAGAYGATPPL-----SQIPYPGG-----------------AKSVI 163
A G ++ YAGA G P + + + P G + I
Sbjct: 263 MAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVTGRMAI 322
Query: 164 PEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
P A P N++L V N+ P TP L + F + V+++ K A V+ D QA
Sbjct: 323 PGAGGMPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQA 382
Query: 222 TVAMQSLQSLKIGQQQLLITYAK 244
+AM L ++ + L T +K
Sbjct: 383 QLAMNHLSGQRLYGKVLRATLSK 405
>gi|297270365|ref|XP_001099980.2| PREDICTED: regulator of differentiation 1-like [Macaca mulatta]
Length = 860
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 477 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 531
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 532 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 588
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 589 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 648
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 649 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 708
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 709 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 739
>gi|118094291|ref|XP_422322.2| PREDICTED: polypyrimidine tract-binding protein 2 [Gallus gallus]
Length = 531
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSASGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|109102685|ref|XP_001109971.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Macaca mulatta]
Length = 537
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 109/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 180 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 237
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 238 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 292
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 293 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 351
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L+ + +K+
Sbjct: 352 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLIFSVSKQ 404
>gi|417402381|gb|JAA48040.1| Putative hnrnp-l/ptb/hephaestus splicing factor family [Desmodus
rotundus]
Length = 531
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + + SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYAEPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 292
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 293 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 352
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 410
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 336 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGSQAQ 388
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE Q
Sbjct: 389 LAMSHLNGHKLHGKPVRITLSKHQN--------VQLPRE------------------GQE 422
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 423 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEDDLKILF 474
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 475 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
>gi|109102683|ref|XP_001109932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Macaca mulatta]
Length = 542
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 109/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 185 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 242
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 243 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 297
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 298 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 356
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L+ + +K+
Sbjct: 357 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLIFSVSKQ 409
>gi|110738193|dbj|BAF01027.1| hypothetical protein [Arabidopsis thaliana]
Length = 823
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ +++ NL + L++ L F +FG LE LAF+ + A++ F A A
Sbjct: 21 PSRHLWVGNLPHGI----LERELADRFLRFGE-LESLAFQ--PGRSYAFVNFNHDEDAFA 73
Query: 74 AVEKMQGFPFYDKPMRIQYAKT-KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+E +QGFP P+RI++AK KS ++ D + RH+E Q A +
Sbjct: 74 AIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIY-------RHDE-------QRSAARG 119
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ--- 189
+ Y + S KS + + A P+ +L++ P +L+
Sbjct: 120 SSFVQRDSRMRYESPDTYS--------KSKMNDRNAEPSEVLYI------GFPASLKVDD 165
Query: 190 -MFFSQFPGFKEVRMVEAKPG--IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ + F F E+ V PG AFV++ + M A A +SLQ G ++ I +AK
Sbjct: 166 ALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAK 223
>gi|42566726|ref|NP_193001.2| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|332657759|gb|AEE83159.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 823
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ +++ NL + L++ L F +FG LE LAF+ + A++ F A A
Sbjct: 21 PSRHLWVGNLPHGI----LERELADRFLRFGE-LESLAFQ--PGRSYAFVNFNHDEDAFA 73
Query: 74 AVEKMQGFPFYDKPMRIQYAKT-KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+E +QGFP P+RI++AK KS ++ D + RH+E Q A +
Sbjct: 74 AIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIY-------RHDE-------QRSAARG 119
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ--- 189
+ Y + S KS + + A P+ +L++ P +L+
Sbjct: 120 SSFVQRDSRMRYESPDTYS--------KSKMNDRNAEPSEVLYI------GFPASLKVDD 165
Query: 190 -MFFSQFPGFKEVRMVEAKPG--IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ + F F E+ V PG AFV++ + M A A +SLQ G ++ I +AK
Sbjct: 166 ALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAK 223
>gi|325181594|emb|CCA16044.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325191994|emb|CCA26461.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 236
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQA 61
+ G+ +P N +Y+ NL +V ++L+Q +F++FG + + I+ + + +G A
Sbjct: 63 ASEHGDIANPGNNLYVANLAHRVTDEELRQ----LFEKFGRLEKCEIIIDPISRESRGFA 118
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKS 97
++ F+DV A+ AV+++ G + MR+++AK K
Sbjct: 119 FVTFEDVRDASDAVQELNGKDIQGRRMRVEHAKRKC 154
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMV-----EAKPGIAFVEYGDEMQAT 222
A P N L+V N+ H T L+ F +F ++ ++ G AFV + D A+
Sbjct: 70 ANPGNNLYVANLAHRVTDEELRQLFEKFGRLEKCEIIIDPISRESRGFAFVTFEDVRDAS 129
Query: 223 VAMQSLQSLKIGQQQLLITYAKK 245
A+Q L I +++ + +AK+
Sbjct: 130 DAVQELNGKDIQGRRMRVEHAKR 152
>gi|417402720|gb|JAA48196.1| Putative polypyrimidine tract-binding protein [Desmodus rotundus]
Length = 557
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 108/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + + SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYAEPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDL-PSG 283
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA--------------------- 166
+ L+ A A+GA +S PY G IP+A
Sbjct: 284 DSQPSLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAA 343
Query: 167 --------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 344 AAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA 403
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 404 LVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 436
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 362 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGSQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 415 LAMSHLNGHKLHGKPVRITLSK---------------------HQNVQLPREGQED---- 449
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 450 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEDDLKILF 500
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 501 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
>gi|10863997|ref|NP_067013.1| polypyrimidine tract-binding protein 2 [Homo sapiens]
gi|332221969|ref|XP_003260137.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Nomascus leucogenys]
gi|332809589|ref|XP_001157727.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pan
troglodytes]
gi|345801645|ref|XP_547270.3| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Canis
lupus familiaris]
gi|397474047|ref|XP_003808502.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pan
paniscus]
gi|426330454|ref|XP_004026226.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Gorilla gorilla gorilla]
gi|74761983|sp|Q9UKA9.1|PTBP2_HUMAN RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Neural polypyrimidine tract-binding protein;
AltName: Full=Neurally-enriched homolog of PTB; AltName:
Full=PTB-like protein
gi|6492336|gb|AAF14284.1|AF176085_1 neural polypyrimidine tract binding protein [Homo sapiens]
gi|22711855|tpg|DAA00060.1| TPA_exp: splicing regulator nPTB1 [Homo sapiens]
gi|119593411|gb|EAW73005.1| polypyrimidine tract binding protein 2, isoform CRA_a [Homo
sapiens]
gi|380815182|gb|AFE79465.1| polypyrimidine tract-binding protein 2 [Macaca mulatta]
gi|384948520|gb|AFI37865.1| polypyrimidine tract-binding protein 2 [Macaca mulatta]
gi|410298260|gb|JAA27730.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
Length = 531
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|225429574|ref|XP_002280068.1| PREDICTED: uncharacterized protein LOC100257637 isoform 1 [Vitis
vinifera]
gi|296081671|emb|CBI20676.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 143 AYGATPPLSQIPYPGGAKSVIPEAPAPP---NNILFVQNVPHDTTPMALQMFFSQFPGFK 199
A+G +P + I P +V E+ PP +NILFV +P D T + F F GFK
Sbjct: 109 AHGISPGIPDIERPSSFGNV--ESLPPPVQESNILFVDGLPKDCTRREVGHLFRPFIGFK 166
Query: 200 EVRMVEAKPG--------IAFVEYGDEMQATVAMQSLQSLKIGQQQ 237
E+R+V +P + FVE+ D + A+++LQ K ++
Sbjct: 167 EIRVVHKEPRHSGDKAMVLCFVEFNDASCSRTALEALQGYKFDDKK 212
>gi|355558193|gb|EHH14973.1| hypothetical protein EGK_00996, partial [Macaca mulatta]
Length = 529
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 175 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 229
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 230 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 277
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 278 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 336
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 337 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 396
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 397 MYGKIIRVTLSK 408
>gi|345801647|ref|XP_003434832.1| PREDICTED: polypyrimidine tract-binding protein 2 [Canis lupus
familiaris]
Length = 540
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 186 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 240
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 241 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 288
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 289 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 347
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 348 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 407
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 408 MYGKIIRVTLSK 419
>gi|328875060|gb|EGG23425.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 302
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 165 EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVA 224
EA APP+ +LF++++P T + FS PGF +R KP AFVE+ D AT A
Sbjct: 2 EARAPPSKVLFIRDIPAGMTNDEFDLLFSNLPGFVSIRR---KPNFAFVEFKDRGFATSA 58
Query: 225 MQ 226
M+
Sbjct: 59 MR 60
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 17/159 (10%)
Query: 91 QYAKTKSDIIAKADGTFVPRERRKRHE-EKGKKRKDQHDANQAGMGLNPAYAGAYGATPP 149
+Y+ S I K D + V ++R R + ++ +K + ++ + P+ + + PP
Sbjct: 131 KYSDPSSSAITKTDPSSVDEKKRSRSDYDRFEKDRSKYRDSYFERDEYPSRGREFDS-PP 189
Query: 150 LSQIPYPGGAKSVIPEAPAPP--------NNILFVQNVPHDTTPMALQMFFSQFPGFKEV 201
+ PG + P A PP + LFV N+P D T L + F GF
Sbjct: 190 I-----PGYEHMMFPTARVPPPPGQFKDPQSTLFVSNLPKDVTERELSILFRFMRGFISC 244
Query: 202 RMV--EAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238
R+V E K I F ++ D A +AM+ LQ ++ +
Sbjct: 245 RLVIREGKYPICFCDFRDIPSAIMAMEILQGYRMDPNDV 283
>gi|148680404|gb|EDL12351.1| polypyrimidine tract binding protein 2, isoform CRA_a [Mus
musculus]
Length = 528
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 175 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 229
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 230 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 277
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 278 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 336
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 337 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 396
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 397 MYGKIIRVTLSK 408
>gi|395821711|ref|XP_003784180.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2
[Otolemur garnettii]
Length = 531
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|355745467|gb|EHH50092.1| hypothetical protein EGM_00861, partial [Macaca fascicularis]
Length = 529
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 175 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 229
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 230 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 277
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 278 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 336
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 337 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 396
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 397 MYGKIIRVTLSK 408
>gi|110739368|dbj|BAF01596.1| hypothetical protein [Arabidopsis thaliana]
Length = 823
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ +++ NL + L++ L F +FG LE LAF+ + A++ F A A
Sbjct: 21 PSRHLWVGNLPHGI----LERELADRFLRFGE-LESLAFQ--PGRSYAFVNFNHDEDAFA 73
Query: 74 AVEKMQGFPFYDKPMRIQYAKT-KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+E +QGFP P+RI++AK KS ++ D + RH+E Q A +
Sbjct: 74 AIESLQGFPLSGNPLRIEFAKAEKSSAGSRTDDIY-------RHDE-------QRSAARG 119
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ--- 189
+ Y + S KS + + A P+ +L++ P +L+
Sbjct: 120 SSFVQRDSRMRYESPDTYS--------KSKMNDRNAEPSEVLYI------GFPASLKVDD 165
Query: 190 -MFFSQFPGFKEVRMVEAKPG--IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ + F F E+ V PG AFV++ + M A A +SLQ G ++ I +AK
Sbjct: 166 ALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAK 223
>gi|16580749|dbj|BAB71742.1| PTB-like protein L [Homo sapiens]
gi|16741546|gb|AAH16582.1| Polypyrimidine tract binding protein 2 [Homo sapiens]
gi|119593413|gb|EAW73007.1| polypyrimidine tract binding protein 2, isoform CRA_c [Homo
sapiens]
gi|123980248|gb|ABM81953.1| polypyrimidine tract binding protein 2 [synthetic construct]
gi|157928112|gb|ABW03352.1| polypyrimidine tract binding protein 2 [synthetic construct]
gi|410216174|gb|JAA05306.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
gi|410328831|gb|JAA33362.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
Length = 532
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|354504008|ref|XP_003514071.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Cricetulus
griseus]
Length = 501
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 147 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 201
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 202 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 249
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 250 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 308
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 309 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 368
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 369 MYGKIIRVTLSK 380
>gi|71896363|ref|NP_001026106.1| polypyrimidine tract-binding protein 1 [Gallus gallus]
gi|60098495|emb|CAH65078.1| hypothetical protein RCJMB04_3b17 [Gallus gallus]
Length = 526
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 107/262 (40%), Gaps = 37/262 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 151 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPMSAQ 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + R + DQ A
Sbjct: 206 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPPLDQTMAA 265
Query: 131 QAGM-GLNPA--YAGAYGATPPLSQIPYPGG------------------------AKSVI 163
G G+ PA YAGA PP IP G + I
Sbjct: 266 AFGAPGIIPASPYAGA--GFPPTFAIPQAAGLTVQNVHGALAPLAIPAAAAAAAAGRIAI 323
Query: 164 PEAPAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQAT 222
P N++L V N+ P TP L + F + + V+++ K A V+ D QA
Sbjct: 324 PGLAGAGNSVLLVSNLNPERVTPQCLFIPFGVYGDVQRVKILFNKKENALVQMADGNQAQ 383
Query: 223 VAMQSLQSLKIGQQQLLITYAK 244
+AM L K+ + + IT +K
Sbjct: 384 LAMSHLNGQKLHGKPIRITLSK 405
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V + +F FG ++ K L +K + LV D A
Sbjct: 331 NSVLLVSNLNPERV-------TPQCLFIPFGVYGDVQRVKILFNKKENALVQMADGNQAQ 383
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE ++DQ
Sbjct: 384 LAMSHLNGQKLHGKPIRITLSKHQT--------VQLPRE----------GQEDQ------ 419
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P L+M F
Sbjct: 420 --GLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSIAEEDLKMLF 469
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A ++ L + +G+ L ++++K
Sbjct: 470 SSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSK 523
>gi|148680405|gb|EDL12352.1| polypyrimidine tract binding protein 2, isoform CRA_b [Mus
musculus]
Length = 529
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 175 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 229
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 230 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 277
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 278 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 336
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 337 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 396
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 397 MYGKIIRVTLSK 408
>gi|345306392|ref|XP_001508115.2| PREDICTED: polypyrimidine tract-binding protein 2-like
[Ornithorhynchus anatinus]
Length = 606
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 252 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 306
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 307 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 354
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 355 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGLPGVSAGGNTV 413
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 414 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 473
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 474 MYGKIIRVTLSK 485
>gi|403283993|ref|XP_003933374.1| PREDICTED: polypyrimidine tract-binding protein 2 [Saimiri
boliviensis boliviensis]
Length = 577
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 223 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 277
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 278 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 325
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 326 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 384
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 385 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 444
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 445 MYGKIIRVTLSK 456
>gi|194389592|dbj|BAG61757.1| unnamed protein product [Homo sapiens]
Length = 540
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 186 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 240
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 241 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 288
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 289 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 347
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 348 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 407
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 408 MYGKIIRVTLSK 419
>gi|53850638|ref|NP_001005555.1| polypyrimidine tract-binding protein 2 [Rattus norvegicus]
gi|81910658|sp|Q66H20.1|PTBP2_RAT RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Neural polypyrimidine tract-binding protein;
AltName: Full=PTB-like protein
gi|93140675|sp|Q91Z31.2|PTBP2_MOUSE RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Brain-enriched polypyrimidine tract-binding
protein; Short=Brain-enriched PTB; AltName: Full=Neural
polypyrimidine tract-binding protein; AltName:
Full=RRM-type RNA-binding protein brPTB
gi|51859313|gb|AAH82076.1| Polypyrimidine tract binding protein 2 [Rattus norvegicus]
gi|149025819|gb|EDL82062.1| polypyrimidine tract binding protein 2, isoform CRA_b [Rattus
norvegicus]
Length = 531
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|9507003|ref|NP_062423.1| polypyrimidine tract-binding protein 2 [Mus musculus]
gi|8358154|gb|AAF21807.2|AF095718_1 RRM-type RNA-binding protein brPTB [Mus musculus]
gi|5824110|emb|CAB54073.1| PTB-like protein [Rattus rattus]
gi|22711857|tpg|DAA00061.1| TPA_exp: splicing regulator nPTB2 [Mus musculus]
gi|74209570|dbj|BAE23317.1| unnamed protein product [Mus musculus]
Length = 532
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|326925087|ref|XP_003208753.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Meleagris
gallopavo]
Length = 531
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|25392158|pir||JC7526 polypyrimidine tract-binding protein-like protein - rat
Length = 532
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|395821709|ref|XP_003784179.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Otolemur garnettii]
Length = 540
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 186 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 240
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 241 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 288
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 289 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 347
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 348 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 407
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 408 MYGKIIRVTLSK 419
>gi|321252443|ref|XP_003192407.1| hypothetical protein CGB_B8090C [Cryptococcus gattii WM276]
gi|317458875|gb|ADV20620.1| Hypothetical protein CGB_B8090C [Cryptococcus gattii WM276]
Length = 262
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 51/74 (68%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P+ T+Y++ L K K +LKQ L+A+F +G +++++A K +GQA++VF++ +AT
Sbjct: 6 TPSPTLYVSGLETKTKKQELKQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAAT 65
Query: 73 AAVEKMQGFPFYDK 86
AA+ + G FY+K
Sbjct: 66 AALRALTGETFYNK 79
>gi|297279326|ref|XP_001105013.2| PREDICTED: polypyrimidine tract-binding protein 2-like isoform 2
[Macaca mulatta]
gi|332809591|ref|XP_001158089.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 7 [Pan
troglodytes]
gi|395730217|ref|XP_003775687.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Pongo
abelii]
gi|397474049|ref|XP_003808503.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Pan
paniscus]
gi|426330456|ref|XP_004026227.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2
[Gorilla gorilla gorilla]
Length = 540
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 186 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 240
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 241 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 288
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 289 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 347
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 348 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 407
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 408 MYGKIIRVTLSK 419
>gi|16307418|gb|AAH10255.1| Polypyrimidine tract binding protein 2 [Mus musculus]
Length = 531
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>gi|348586487|ref|XP_003479000.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Cavia
porcellus]
Length = 581
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 227 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 281
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 282 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 329
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 330 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 388
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 389 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 448
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 449 MYGKIIRVTLSK 460
>gi|298710792|emb|CBJ32209.1| RNA-binding protein SiahBP [Ectocarpus siliculosus]
Length = 696
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 35/239 (14%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATA 73
IY+ +L+ ++K + + ++F FG L+++ T +HKG ++ + DV SA A
Sbjct: 289 IYVGSLHYELK----ESDITSIFANFGA-LKLVDMSHDSSTGRHKGFCFIEYVDVKSADA 343
Query: 74 AVEKMQGFPFYDKPMRI-QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ M GF + +++ + T S + +G +P + QH + A
Sbjct: 344 ALRAMNGFELAGRAIKVGRPLNTDSGVAGGIEGMGLPAAMQLPGM---AAFMAQHSTSAA 400
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMALQMF 191
G GA G+ Q+ K+ + AP ++V NV PH TT M ++
Sbjct: 401 G--------GAQGSGVAAEQL------KAAMGMTTAPAQTKIYVGNVEPHITTEM-IKTV 445
Query: 192 FSQFPGFKEVRMVE--AKP----GIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
F F MV+ + P G F++Y E A + ++ S ++ + L + +A+
Sbjct: 446 FEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQ 504
>gi|410967802|ref|XP_003990404.1| PREDICTED: polypyrimidine tract-binding protein 2 [Felis catus]
Length = 566
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 212 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 266
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 267 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 314
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 315 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 373
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 374 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 433
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 434 MYGKIIRVTLSK 445
>gi|224105517|ref|XP_002313840.1| predicted protein [Populus trichocarpa]
gi|222850248|gb|EEE87795.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 42/239 (17%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A+ G+++S I++ +L V L+++ + + T + KG ++ F
Sbjct: 166 ADAGSDLS----IFVGDLAADVTDAMLQETFATKYASVKGAKVVADSNTGRSKGYGFVRF 221
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKD 125
D T A+ +M G +PMRI A K P ++++ +
Sbjct: 222 GDENEKTRAITEMNGAYCSSRPMRIGVATPKK-----------PSAYQQQYSSQA----- 265
Query: 126 QHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTP 185
AG + + ++Q G + N +FV + D T
Sbjct: 266 ------------LVLAGGHASNGTMAQGSQSDGDSN---------NTTIFVGGIDSDVTD 304
Query: 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
L+ FSQF V+M K G AFV++ + A A+QSL IG+Q + +++ +
Sbjct: 305 EDLRQPFSQFGEVVSVKMPTGK-GCAFVQFANRKNAEDALQSLNGTTIGKQTVRLSWGR 362
>gi|73959499|ref|XP_866820.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 4 [Canis
lupus familiaris]
gi|119593416|gb|EAW73010.1| polypyrimidine tract binding protein 2, isoform CRA_f [Homo
sapiens]
Length = 480
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 126 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 180
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 181 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 228
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 229 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 287
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 288 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 347
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 348 MYGKIIRVTLSK 359
>gi|345323919|ref|XP_001506947.2| PREDICTED: polypyrimidine tract-binding protein 1 [Ornithorhynchus
anatinus]
Length = 707
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 108/274 (39%), Gaps = 58/274 (21%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + + SA
Sbjct: 330 LSPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYAEPMSA 384
Query: 72 TAAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S + + + + R D
Sbjct: 385 QHAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSG 433
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEA-------------------- 166
+ + L+ A A+GA +S PY G IP+A
Sbjct: 434 D-SQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSA 492
Query: 167 ---------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGI 210
N++L V N+ P TP L + F + + V+++ K
Sbjct: 493 AAAAAAAGRIAIPGLTGAGNSVLLVSNLNPERGTPQCLFILFGVYGDVQRVKILFNKKEN 552
Query: 211 AFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L K+ + + IT +K
Sbjct: 553 ALVQMADGNQAQLAMSHLNGQKLHGKPIRITLSK 586
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASATA 73
N+ + ++NLN + Q +F FG ++ K L +K + LV D A
Sbjct: 512 NSVLLVSNLNPERGTPQ------CLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQL 565
Query: 74 AVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAG 133
A+ + G + KP+RI +K ++ +PRE + E++G +
Sbjct: 566 AMSHLNGQKLHGKPIRITLSKHQT--------VQLPREGQ---EDRGLTKD--------- 605
Query: 134 MGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS 193
YG +P L + PG + PP+ L + N+P T L+M FS
Sbjct: 606 ----------YGNSP-LHRFKKPGSKNF---QNIFPPSATLHLSNIPPSITEEDLKMLFS 651
Query: 194 QFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAKK 245
G K + + +A ++ G +A ++ L + +G+ L ++++K
Sbjct: 652 SNSGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSKS 705
>gi|395535423|ref|XP_003769725.1| PREDICTED: polypyrimidine tract-binding protein 2 [Sarcophilus
harrisii]
Length = 494
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 140 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 194
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 195 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 242
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 243 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 301
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 302 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 361
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 362 MYGKIIRVTLSK 373
>gi|291398459|ref|XP_002715890.1| PREDICTED: polypyrimidine tract binding protein 2 [Oryctolagus
cuniculus]
Length = 536
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 281 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 340
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 341 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 400
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 401 NGQKMYGKIIRVTLSK 416
>gi|402890606|ref|XP_003908574.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Papio anubis]
gi|119620774|gb|EAX00369.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_b [Homo
sapiens]
Length = 437
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 80 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 137
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAY--AGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 138 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 192
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 193 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 251
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 252 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 304
>gi|301758643|ref|XP_002915171.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Ailuropoda
melanoleuca]
gi|395730215|ref|XP_002810624.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pongo
abelii]
gi|22218304|gb|AAM94624.1| non-neuronal splice variant nPTB3 [Homo sapiens]
gi|119593414|gb|EAW73008.1| polypyrimidine tract binding protein 2, isoform CRA_d [Homo
sapiens]
Length = 537
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 281 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 340
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 341 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 400
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 401 NGQKMYGKIIRVTLSK 416
>gi|242081967|ref|XP_002445752.1| hypothetical protein SORBIDRAFT_07g025090 [Sorghum bicolor]
gi|241942102|gb|EES15247.1| hypothetical protein SORBIDRAFT_07g025090 [Sorghum bicolor]
Length = 203
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 164 PEAPAPPNN--ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PG-----IAFV 213
PE P PP+ L+++ +P + T + F F GF+EVR+V + PG + FV
Sbjct: 94 PEPPLPPDASPTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFV 153
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQ 237
++ + QAT+A+++LQ K +
Sbjct: 154 DFDNPAQATIALEALQGYKFDEHD 177
>gi|397493589|ref|XP_003817686.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Pan paniscus]
Length = 539
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 182 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 239
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 240 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 294
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 295 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 353
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 354 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 406
>gi|332227246|ref|XP_003262804.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Nomascus leucogenys]
Length = 542
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 185 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 242
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 243 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 297
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 298 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 356
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 357 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 409
>gi|410035016|ref|XP_001168474.3| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 4
[Pan troglodytes]
gi|426335280|ref|XP_004029156.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Gorilla
gorilla gorilla]
gi|119620773|gb|EAX00368.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_a [Homo
sapiens]
Length = 537
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 180 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 237
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 238 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 292
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 293 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 351
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 352 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 404
>gi|426226432|ref|XP_004007347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Ovis
aries]
Length = 507
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 150 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 207
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAY--AGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 208 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 262
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 263 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 321
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 322 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 374
>gi|440902651|gb|ELR53420.1| Polypyrimidine tract-binding protein 2, partial [Bos grunniens
mutus]
Length = 524
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 165 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 219
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 220 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 267
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 268 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 327
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 328 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 387
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 388 NGQKMYGKIIRVTLSK 403
>gi|332221975|ref|XP_003260140.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 4
[Nomascus leucogenys]
Length = 568
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 209 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 263
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 264 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 311
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 312 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 371
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 372 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 431
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 432 NGQKMYGKIIRVTLSK 447
>gi|344293564|ref|XP_003418492.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Loxodonta
africana]
Length = 686
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 327 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 381
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 382 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 429
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 430 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 489
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 490 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 549
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 550 NGQKMYGKIIRVTLSK 565
>gi|291386909|ref|XP_002709957.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oryctolagus cuniculus]
Length = 547
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 190 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 247
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 248 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 302
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 303 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 361
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 362 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 414
>gi|194389558|dbj|BAG61740.1| unnamed protein product [Homo sapiens]
Length = 548
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 189 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 243
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 244 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 291
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 292 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 351
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 352 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 411
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 412 NGQKMYGKIIRVTLSK 427
>gi|355565619|gb|EHH22048.1| hypothetical protein EGK_05237 [Macaca mulatta]
Length = 542
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 185 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 242
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 243 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 297
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 298 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 356
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 357 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 409
>gi|168024982|ref|XP_001765014.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683823|gb|EDQ70230.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 158
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GMG P G G P + GG + + P+A ++ LFV +P D + F
Sbjct: 35 GMGGRPGALGLNGGAPEPDVLR--GGLEVLPPDA----SSTLFVDGLPQDCSRREAAHIF 88
Query: 193 SQFPGFKEVRMVE--------AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-----LL 239
F GFKEVR+V K + FVE+ D A A+++LQ K + L
Sbjct: 89 RPFIGFKEVRLVHKDAKRADGGKVVLCFVEFADARCAATALEALQGYKFDETDHESYVLR 148
Query: 240 ITYAK 244
+T+A+
Sbjct: 149 LTFAR 153
>gi|281349698|gb|EFB25282.1| hypothetical protein PANDA_003123 [Ailuropoda melanoleuca]
Length = 501
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 142 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 196
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 197 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 244
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 245 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 304
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 305 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 364
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 365 NGQKMYGKIIRVTLSK 380
>gi|297279324|ref|XP_001105316.2| PREDICTED: polypyrimidine tract-binding protein 2-like isoform 6
[Macaca mulatta]
gi|22218306|gb|AAM94625.1| non-neuronal splice variant nPTB4 [Homo sapiens]
gi|119593412|gb|EAW73006.1| polypyrimidine tract binding protein 2, isoform CRA_b [Homo
sapiens]
Length = 536
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 281 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 340
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 341 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 400
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 401 NGQKMYGKIIRVTLSK 416
>gi|440907649|gb|ELR57769.1| Heterogeneous nuclear ribonucleoprotein L-like protein [Bos
grunniens mutus]
Length = 541
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 184 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 241
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 242 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 296
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 297 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 355
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 356 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 408
>gi|410955434|ref|XP_003984358.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Felis catus]
Length = 544
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 187 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 244
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 245 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 299
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 300 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 358
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 359 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 411
>gi|291386911|ref|XP_002709958.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oryctolagus cuniculus]
Length = 541
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 184 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 241
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 242 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 296
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 297 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 355
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 356 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 408
>gi|426216016|ref|XP_004002265.1| PREDICTED: polypyrimidine tract-binding protein 2 [Ovis aries]
Length = 510
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 151 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 205
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 206 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 253
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 254 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 313
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 314 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 373
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 374 NGQKMYGKIIRVTLSK 389
>gi|395750059|ref|XP_003779055.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1 [Pongo abelii]
Length = 782
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 69/269 (25%), Positives = 110/269 (40%), Gaps = 50/269 (18%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 406 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 460
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G++ D
Sbjct: 461 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGRQPALAWDQ 517
Query: 130 NQA------GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA----------------- 166
N + +P YAGA PP IP G +P
Sbjct: 518 NHGPRPXXXXISASP-YAGA--GFPPTFAIPQAAGLS--VPNVHGALAPLAIPSAAAAAA 572
Query: 167 ----------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEY 215
N++L V N+ P TP +L + F + + V+++ K A V+
Sbjct: 573 AAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQM 632
Query: 216 GDEMQATVAMQSLQSLKIGQQQLLITYAK 244
D QA +AM L K+ + + IT +K
Sbjct: 633 ADGNQAQLAMSHLNGHKLHGKPIRITLSK 661
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 587 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 639
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI ++K +PRE Q
Sbjct: 640 LAMSHLNGHKLHGKPIRIT--------LSKHQNVQLPRE------------------GQE 673
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 674 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 725
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 726 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 779
>gi|380478379|emb|CCF43635.1| RNA recognition domain-containing protein, partial [Colletotrichum
higginsianum]
Length = 419
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 35/246 (14%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
++ P +I++ +L +V L A F + + + + +G ++ F D
Sbjct: 146 DDRGPEYSIFVGDLGPEVNEYVLVSLFQARFPSCKSAKIMTDAMSGQSRGYGFVRFTDEQ 205
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A+ +MQG ++PMRI A K+ R H G + H
Sbjct: 206 DQQRALVEMQGVYCGNRPMRISTATPKN---------------RSNH---GGPYQQHHGN 247
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA--------PPNNILFVQNVPH 181
GL P G YG P GGA P P N +FV +
Sbjct: 248 QMMAPGLPPHQQGFYGVPSPAQY----GGAYGAPYNPPGQQMNQFTDPNNTTVFVGGLSG 303
Query: 182 DTTPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239
T L+ FF GF E+ V+ P G FV++ A +A+ +Q IG ++
Sbjct: 304 YVTEDELRSFFQ---GFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVR 360
Query: 240 ITYAKK 245
+++ +
Sbjct: 361 LSWGRS 366
>gi|332809593|ref|XP_003308280.1| PREDICTED: polypyrimidine tract-binding protein 2 [Pan troglodytes]
gi|397474051|ref|XP_003808504.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 3 [Pan
paniscus]
Length = 548
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 189 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 243
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 244 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 291
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 292 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 351
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 352 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 411
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 412 NGQKMYGKIIRVTLSK 427
>gi|119620776|gb|EAX00371.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_d [Homo
sapiens]
gi|119620777|gb|EAX00372.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_d [Homo
sapiens]
Length = 542
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L+F+ V A A + G Y ++I+YA
Sbjct: 185 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 242
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 243 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 297
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 298 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 356
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 357 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 409
>gi|426330458|ref|XP_004026228.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 3
[Gorilla gorilla gorilla]
Length = 548
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 189 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 243
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 244 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 291
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 292 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 351
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 352 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 411
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 412 NGQKMYGKIIRVTLSK 427
>gi|402855348|ref|XP_003892288.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Papio
anubis]
Length = 506
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 147 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 201
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 202 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 249
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 250 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 309
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 310 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 369
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 370 NGQKMYGKIIRVTLSK 385
>gi|47156946|gb|AAT12330.1| U1 small ribonucleoprotein [Antonospora locustae]
Length = 175
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P T+Y NLNEK+ +L + L + ++ ++++ + T++ +GQA++ FK A
Sbjct: 5 PCRTLYFQNLNEKMNKSELARRLKMLVSRYAYVVDVTIWNTMRLRGQAFVTFKTTDDAAK 64
Query: 74 AVEKMQGFPFYDKPMRIQYA-------KTKSDIIAKADGTFV 108
+ F F M+I +A KTK +++ + T V
Sbjct: 65 IKSILDNFFFLGTSMKIHFAKKVSRRYKTKQELVFRPTKTLV 106
>gi|327270713|ref|XP_003220133.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Anolis
carolinensis]
Length = 531
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 36/251 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGG-------------AKSVIPEAPAPPNNIL 174
L+PA A A+ L +P P G + +P + N +L
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLGIPNAAAAAAAAAAGRVGMPGVSSGGNTVL 340
Query: 175 FVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI 233
V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K+
Sbjct: 341 LVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMSHLNGQKM 400
Query: 234 GQQQLLITYAK 244
+ + +T +K
Sbjct: 401 YGKIIRVTLSK 411
>gi|431896401|gb|ELK05813.1| Polypyrimidine tract-binding protein 2 [Pteropus alecto]
Length = 485
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 126 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 180
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 181 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 228
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 229 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 288
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 289 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 348
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 349 NGQKMYGKIIRVTLSK 364
>gi|380746180|gb|AFE48023.1| sans fille, partial [Drosophila propachuca]
Length = 62
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 80 GFPFYDKPMRIQYAKTKSDIIAKADGTFVPR 110
GFPFYDKPMRI Y+K+ SDI+AK GT+ R
Sbjct: 1 GFPFYDKPMRIAYSKSDSDIVAKMKGTYKER 31
>gi|338714336|ref|XP_001918049.2| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Equus caballus]
Length = 543
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA L F+ V A A + G Y ++I+YA
Sbjct: 186 LYTVCNPVGKVQRIVIFK--RNGIQAMLTFESVLCAQKAKAALNGADIYAGCCTLKIEYA 243
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 244 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 298
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 299 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 357
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 358 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 410
>gi|301781136|ref|XP_002925987.1| PREDICTED: regulator of differentiation 1-like [Ailuropoda
melanoleuca]
Length = 567
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 194 SPVLRIIIENLFYPVTL----EVLHQIFSKFGAVLKIITF-TKNNQFQALLQYADPVNAH 248
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 249 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 305
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + +P
Sbjct: 306 MAAAFGAPGIISSPYAGAAGFAPAIGFHQATGLSVPAVPGALGPLTITSSAVTGRMAVPG 365
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 366 AGGMPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQL 425
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 426 AMNHLSGQRLYGKVLRATLSK 446
>gi|302830338|ref|XP_002946735.1| hypothetical protein VOLCADRAFT_120369 [Volvox carteri f.
nagariensis]
gi|300267779|gb|EFJ51961.1| hypothetical protein VOLCADRAFT_120369 [Volvox carteri f.
nagariensis]
Length = 683
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP-----GIAFVEYGDEMQATVA 224
P+N++ V+N+P D ++ F F G VR+V ++ G AFVE+ E A V
Sbjct: 222 PSNLVHVRNIPEDRDESEVRQLFEGFSGLLSVRLVRSRTSGASRGNAFVEFATEADAAVL 281
Query: 225 MQS--LQSLKIGQQQLLITYA 243
M++ L++G L + YA
Sbjct: 282 METKARHGLQLGGNTLWLEYA 302
>gi|156050581|ref|XP_001591252.1| hypothetical protein SS1G_07878 [Sclerotinia sclerotiorum 1980]
gi|154692278|gb|EDN92016.1| hypothetical protein SS1G_07878 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 376
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK--HKGQAWLVFKDVA 69
I+PNN IYI NL D ++ L F+ FGTI ++ + + KG A++ F DV
Sbjct: 142 IAPNNGIYIGNL----LFDITEEDLKKEFEHFGTITDVRVTRDARGLSKGFAYIDFADVQ 197
Query: 70 SATAAVEKMQGFPFYDKPMRIQY 92
SATAA+E+ F + + + Y
Sbjct: 198 SATAAIEEKNQTIFEGRRLIVNY 220
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 157 GGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI----AF 212
GG P PNN +++ N+ D T L+ F F +VR+ G+ A+
Sbjct: 131 GGRDGGFERPPIAPNNGIYIGNLLFDITEEDLKKEFEHFGTITDVRVTRDARGLSKGFAY 190
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+++ D AT A++ ++L++ Y +
Sbjct: 191 IDFADVQSATAAIEEKNQTIFEGRRLIVNYVNQ 223
>gi|334324359|ref|XP_001381834.2| PREDICTED: polypyrimidine tract-binding protein 2-like [Monodelphis
domestica]
Length = 640
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 41/256 (16%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 281 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 335
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 336 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 383
Query: 131 QAGMGLNPAYAGAYGATPPLSQIP---YPGGAKSV------------------IPEAPAP 169
L+PA A A+ L +P PG + +P A
Sbjct: 384 DGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAG 443
Query: 170 PNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228
N +L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L
Sbjct: 444 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHL 503
Query: 229 QSLKIGQQQLLITYAK 244
K+ + + +T +K
Sbjct: 504 NGQKMYGKIIRVTLSK 519
>gi|241949525|ref|XP_002417485.1| U2 small nuclear ribonucleoprotein B, putative [Candida
dubliniensis CD36]
gi|223640823|emb|CAX45138.1| U2 small nuclear ribonucleoprotein B, putative [Candida
dubliniensis CD36]
Length = 131
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASA 71
+ P+ T+Y+ NLN K+ L +L+ +F FG I+ I H G A+++F ++ SA
Sbjct: 28 LKPSQTLYVKNLNNKINKKVLLHNLYLLFSAFGDIISINL-----HNGYAFIIFTNLNSA 82
Query: 72 TAAVEKMQGFPFYDKPMRIQYAKTKSDIIA 101
T A+ ++ F+DKP+ + Y+ +S +I+
Sbjct: 83 TLALRNLKNQDFFDKPLVLNYSVKESKVIS 112
>gi|405953553|gb|EKC21194.1| Squamous cell carcinoma antigen recognized by T-cells 3
[Crassostrea gigas]
Length = 970
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE----AKPGIAFVEYGDEMQA 221
+ A N LF++N+P + AL FS+ KEVRMV A G+A+VE+ DE A
Sbjct: 859 STAMEKNKLFIKNLPFTCSKDALIQIFSEHGPVKEVRMVTYRSGAPKGLAYVEFEDEQDA 918
Query: 222 TVAMQSLQSLKIGQQQLLI 240
A+ LKIG ++ +
Sbjct: 919 AKAVMKTDGLKIGDHEIEV 937
>gi|297790690|ref|XP_002863230.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297309064|gb|EFH39489.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 42/238 (17%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73
P+ +++ NL + ++ L F +FG LE LAF+ + A++ FK A A
Sbjct: 12 PSRHLWVGNLPHGIP----ERELADRFLRFGE-LESLAFQ--PGRSYAFVNFKHNEDAFA 64
Query: 74 AVEKMQGFPFYDKPMRIQYAKT-KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+E +QGFP P+RI++AK KS ++ + F RH+E Q A +
Sbjct: 65 AIESLQGFPLSGNPLRIEFAKAEKSSTGSRTEDIF-------RHDE-------QRSAARG 110
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ--- 189
+ Y + S KS + + A P+ +L++ P +L+
Sbjct: 111 SSFVQKDSRMLYESPDTYS--------KSKMNDRNAEPSEVLYI------GFPASLKVDD 156
Query: 190 -MFFSQFPGFKEVRMVEAKPG--IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ + F F E+ V PG AFV++ + M A A ++LQ G ++ I +AK
Sbjct: 157 ALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKETLQGKLFGNPRVHICFAK 214
>gi|281345981|gb|EFB21565.1| hypothetical protein PANDA_015565 [Ailuropoda melanoleuca]
Length = 444
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 37/261 (14%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I NL V + + LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 140 SPVLRIIIENLFYPVTL----EVLHQIFSKFGAVLKIITF-TKNNQFQALLQYADPVNAH 194
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 195 YAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPTGDGQPSLEPP 251
Query: 130 NQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA-------------KSVIPE 165
A G ++ YAGA G P + +P GA + +P
Sbjct: 252 MAAAFGAPGIISSPYAGAAGFAPAIGFHQATGLSVPAVPGALGPLTITSSAVTGRMAVPG 311
Query: 166 APA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATV 223
A P N++L V N+ P TP L + F + V+++ K A V+ D QA +
Sbjct: 312 AGGMPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQL 371
Query: 224 AMQSLQSLKIGQQQLLITYAK 244
AM L ++ + L T +K
Sbjct: 372 AMNHLSGQRLYGKVLRATLSK 392
>gi|326490583|dbj|BAJ89959.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 333
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 10/76 (13%)
Query: 164 PEAPAPPN--NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PG-----IAFV 213
PE P PP+ N L+++ +P + T + F F GF+EVR+V + PG + FV
Sbjct: 174 PEPPLPPDASNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFV 233
Query: 214 EYGDEMQATVAMQSLQ 229
++ QAT+A+++LQ
Sbjct: 234 DFDSPAQATIALEALQ 249
>gi|322709421|gb|EFZ00997.1| oligouridylate binding protein ,putative [Metarhizium anisopliae
ARSEF 23]
Length = 472
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAA 74
I++ +L+ +V D L Q+ F FGT+ E + KT + +G ++ F+D + A A
Sbjct: 172 IFVGDLSNEVNDDILLQA----FSAFGTVSEARVMWDMKTGRTRGYGFVAFRDRSDAEKA 227
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGM 134
+ M G + +R +A +KG+ Q A QA M
Sbjct: 228 LSSMDGEWLGSRAIRCNWAN-----------------------QKGQPSIAQQQAMQA-M 263
Query: 135 GLNPAYAGAYGATPPLSQIPYPG---GAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMF 191
GL P T P +P G+ V+ +V N+ TTP +
Sbjct: 264 GLTP--------TTPFGHHQFPAHGVGSYDVVLNQTPNWQTTCYVGNLTPYTTPNDVVPL 315
Query: 192 FSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
F F GF +A G AF++ A +A+ + + + L ++ K
Sbjct: 316 FQNF-GFVVESRFQADRGFAFIKMDSHENAAMAICQMNGYNVNGRPLKCSWGK 367
>gi|259016306|sp|O59670.2|PM14_SCHPO RecName: Full=Pre-mRNA branch site p14-like protein
Length = 115
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
M P NQ N+ ++I NL+ K+ +++ + +F ++G + +I T++ +G
Sbjct: 1 MPPSTVNQ----EVNSILFIKNLSFKITAEEM----YDLFGRYGPVRQIRLGNTVQTRGT 52
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG 105
A++V+++V A A EK+ G+ F D+ + + Y + AK DG
Sbjct: 53 AFVVYENVQDARRACEKLSGYNFMDRYLVVHYYNPER---AKVDG 94
>gi|367019444|ref|XP_003659007.1| hypothetical protein MYCTH_2087998 [Myceliophthora thermophila ATCC
42464]
gi|347006274|gb|AEO53762.1| hypothetical protein MYCTH_2087998 [Myceliophthora thermophila ATCC
42464]
Length = 396
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 37/244 (15%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69
++ P +I++ +L +V L + F + + T + +G ++ F D A
Sbjct: 127 DDRGPEYSIFVGDLGPEVNEFVLVSLFQSRFPSCKSAKIMTDAMTGQSRGYGFVRFSDEA 186
Query: 70 SATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A+ +MQG ++PMRI A K+ + H+ G
Sbjct: 187 DQQRALVEMQGVYCGNRPMRISTATPKT----------------RSHQYGGAH------- 223
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIP-YPGGAKSVIPEAPA-----PPNNILFVQNVPHDT 183
G G NP G P+ P Y G + P P P N +FV +
Sbjct: 224 ---GQGANPMIPPVPGHPGPMWGAPAYYGQGAAFNPMQPMNQFTDPNNTTVFVGGLSGYV 280
Query: 184 TPMALQMFFSQFPGFKEVRMVEAKP--GIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241
T L+ FF GF E+ V+ P G FV++ A +A+ +Q IG ++ ++
Sbjct: 281 TEDELRSFFQ---GFGEITYVKIPPGKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVRLS 337
Query: 242 YAKK 245
+ +
Sbjct: 338 WGRS 341
>gi|342877370|gb|EGU78838.1| hypothetical protein FOXB_10660 [Fusarium oxysporum Fo5176]
Length = 177
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 4 EVANQGNEISP--NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
E++++G +++P N +++ NL+ V ++L +F +FG I ++ KG A
Sbjct: 61 EMSSRGGKLAPEVNRALFVKNLSYNVTPEEL----FDLFGKFGPIRQVRQGIANNTKGTA 116
Query: 62 WLVFKDVASATAAVEKMQGFPFYDKPMRIQY------AKTKSDIIAKAD 104
++V++DVA A A +K+ GF F ++ + + Y AK+K D+ A+ +
Sbjct: 117 FVVYEDVADAKQACDKLNGFNFQNRYLVVLYHQPDKMAKSKEDLEARRE 165
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVR--MVEAKPGIAFVEYGDEMQATVAMQSL 228
N LFV+N+ ++ TP L F +F ++VR + G AFV Y D A A L
Sbjct: 74 NRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIANNTKGTAFVVYEDVADAKQACDKL 133
Query: 229 QSLKIGQQQLLITY 242
+ L++ Y
Sbjct: 134 NGFNFQNRYLVVLY 147
>gi|156836884|ref|XP_001642482.1| hypothetical protein Kpol_322p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113017|gb|EDO14624.1| hypothetical protein Kpol_322p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 87
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
+T+YI+NL++ + +D+L+ +L +F +G +++I + +GQA++ A A
Sbjct: 5 STLYIHNLSDGIGMDKLRSNLFLLFSMYGEVIDI-RLDGRQLRGQAFIRMSTPDEANLAR 63
Query: 76 EKMQGFPFYDKPMRIQYAKTK 96
+ G PF+ +P++I+++K +
Sbjct: 64 ITLNGEPFFGQPLKIEFSKNE 84
>gi|295442846|ref|NP_595835.2| Pre-mRNA branch site p14-like protein [Schizosaccharomyces pombe
972h-]
gi|254745590|emb|CAA18384.2| U2 snRNP-associated protein SF3B14 ortholog (predicted)
[Schizosaccharomyces pombe]
Length = 114
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
M P NQ N+ ++I NL+ K+ +++ + +F ++G + +I T++ +G
Sbjct: 1 MPPSTVNQ----EVNSILFIKNLSFKITAEEM----YDLFGRYGPVRQIRLGNTVQTRGT 52
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG 105
A++V+++V A A EK+ G+ F D+ + + Y + AK DG
Sbjct: 53 AFVVYENVQDARRACEKLSGYNFMDRYLVVHYYNPER---AKVDG 94
>gi|327270620|ref|XP_003220087.1| PREDICTED: RNA-binding protein 40-like [Anolis carolinensis]
Length = 515
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF-----KTLKHKGQAWLVFKDV 68
PN IY+ NL+++V+ LK + + F + +E + F K + KGQA++ D
Sbjct: 411 PNCRIYVKNLSKQVQEKDLK-FIFGRYVDFSSEVERIMFDIRLMKEGRMKGQAFIGLPDE 469
Query: 69 ASATAAVEKMQGFPFYDKPMRIQYAKT 95
+AT A++++ G+ +DKPM +Q+A++
Sbjct: 470 KAATKALKEVNGYLLFDKPMVVQFARS 496
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,978,917,886
Number of Sequences: 23463169
Number of extensions: 172225498
Number of successful extensions: 578624
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 4290
Number of HSP's that attempted gapping in prelim test: 572044
Number of HSP's gapped (non-prelim): 9323
length of query: 245
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 106
effective length of database: 9,097,814,876
effective search space: 964368376856
effective search space used: 964368376856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)