BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025982
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/250 (73%), Positives = 209/250 (83%), Gaps = 5/250 (2%)
Query: 1 MEPEVANQG--NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHK 58
ME + ANQG +E+SPN TIYINNLNEKVK+D+LK+SL+AVF QFG ILEILAFKT KHK
Sbjct: 1 MEMQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHK 60
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEE 118
GQAW+VF + SA+ A+ KM FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKRHEE
Sbjct: 61 GQAWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEE 120
Query: 119 KGKKRK--DQH-DANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175
KG +K DQH D+ Q GM +N AY G YGA PPLSQ+PYPGG K +PEAPAPPNNILF
Sbjct: 121 KGGGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILF 180
Query: 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ 235
VQN+PH+TTPM LQM F Q+ GFKEVRM+EAKPGIAFVE+ DEMQ+TVAMQ LQ KI Q
Sbjct: 181 VQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQQ 240
Query: 236 QQLLITYAKK 245
Q+LITYAKK
Sbjct: 241 NQMLITYAKK 250
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 335 bits (858), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/244 (69%), Positives = 200/244 (81%), Gaps = 7/244 (2%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A + N PN TIYINNLNEK+K+++LK+SL AVF QFG IL++LAFKTLKHKGQAW+VF
Sbjct: 13 APEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVF 72
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE---EKGKK 122
+DVASAT A++ MQ FPF++KPMRIQYAKTKSDIIAKADGTFVPRERRKR++ EK +K
Sbjct: 73 EDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQK 132
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
R+ HD +Q G+G+N AY G YGA PPLSQ+P+ G K ++PE PNNILFVQN+PH+
Sbjct: 133 REQHHDVSQVGLGVN-AYPGVYGA-PPLSQLPFAGAQKVMMPEIIV-PNNILFVQNLPHE 189
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLIT 241
TTPM LQM F Q+PGFKEVRMVEAKPGIAFVEYGDE QAT AM LQ KI + Q+LI+
Sbjct: 190 TTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLIS 249
Query: 242 YAKK 245
YAKK
Sbjct: 250 YAKK 253
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 335 bits (858), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/244 (69%), Positives = 200/244 (81%), Gaps = 7/244 (2%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
A + N PN TIYINNLNEK+K+++LK+SL AVF QFG IL++LAFKTLKHKGQAW+VF
Sbjct: 13 APEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVF 72
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHE---EKGKK 122
+DVASAT A++ MQ FPF++KPMRIQYAKTKSDIIAKADGTFVPRERRKR++ EK +K
Sbjct: 73 EDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQK 132
Query: 123 RKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHD 182
R+ HD +Q G+G+N AY G YGA PPLSQ+P+ G K ++PE PNNILFVQN+PH+
Sbjct: 133 REQHHDVSQVGLGVN-AYPGVYGA-PPLSQLPFAGAQKVMMPEIIV-PNNILFVQNLPHE 189
Query: 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLIT 241
TTPM LQM F Q+PGFKEVRMVEAKPGIAFVEYGDE QAT AM LQ KI + Q+LI+
Sbjct: 190 TTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLIS 249
Query: 242 YAKK 245
YAKK
Sbjct: 250 YAKK 253
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 250 bits (639), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 171/237 (72%), Gaps = 11/237 (4%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI NLNE++K ++LK+SL+ +F QFG IL+++A KT K +GQAW+ F +V +
Sbjct: 5 DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEK-GKKRKDQHDA 129
A AV +MQ FPFYDKPMR+QYAK KSD +AKA+GTFVP++++++ EEK +KR+D
Sbjct: 65 AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRP 124
Query: 130 NQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQ 189
N A + G P Q P G +++ PPNNILF+QN+PH+TT M LQ
Sbjct: 125 NTANGPSANGPSANNGVPAPSFQ---PSGQETM------PPNNILFIQNLPHETTSMMLQ 175
Query: 190 MFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
+ F Q+PGFKE+RM++AKPGIAFVEY D++QA++AMQ LQ KI Q ++I++AKK
Sbjct: 176 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 226 bits (577), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 169/236 (71%), Gaps = 12/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN +IYI ++NEK+K ++LK+SL+ +F QFG +L+++A KT K +GQAW+VF +V +
Sbjct: 5 DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ AV +MQ FPFYDKPMRIQYAK+KSD + KA+G+FVP+E++ + EEK ++++ +
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
Q M N A PP P G ++ PPNNILF+ N+P +T M LQ+
Sbjct: 125 QPSMP-NGATTQNGMPVPPFQ----PSGQDTM------PPNNILFIHNLPIETNSMMLQL 173
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245
F Q+PGFKE+RM+EAKPGIAFVEY D++Q+++AMQ+LQ KI Q +++++AKK
Sbjct: 174 LFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 221 bits (563), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/278 (44%), Positives = 166/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PNNTIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + LK +GQA+++FK+ +S
Sbjct: 5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQY+KT SDIIAK GTFV R+R+++ + K K + Q N
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKN 124
Query: 131 -QAGMGLNPAYAGAYGA---TPPLSQIP-------------------------------- 154
G L P G A P ++Q P
Sbjct: 125 AMPGAALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGG 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG + P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +SLQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 220 bits (560), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 125/279 (44%), Positives = 165/279 (59%), Gaps = 45/279 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
Query: 130 NQAGMGLNPAYAGAYG---ATPPLSQIP-------------------------------- 154
Q G G P G PP++Q P
Sbjct: 125 VQGG-GATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPG 183
Query: 155 -------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK 207
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 184 AMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243
Query: 208 PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 219 bits (558), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 165/278 (59%), Gaps = 43/278 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRER-RKRHEEKGKKRKDQHDA 129
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R R++ + K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKA 124
Query: 130 NQAGMG--LNPAYAGAYGATPPLSQIP--------------------------------- 154
Q G + A G PP++Q P
Sbjct: 125 VQGGAAAPVVGAVQGPVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
Query: 155 ------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V +
Sbjct: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 217 bits (552), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 166/280 (59%), Gaps = 47/280 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E PN+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL ++LK +GQA+++FK+V+S
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GTFV R+R++ E++ K ++ A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQETPAAK 122
Query: 131 QAGMGLNPA-----YAGAYGATPPLSQIP------------------------------- 154
+A G A G PP++Q P
Sbjct: 123 KAVQGGAAAPVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPP 182
Query: 155 --------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 183 GAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242
Query: 207 KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 153/246 (62%), Gaps = 29/246 (11%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+ NLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE----------RRKRHEEKG 120
AT A +Q F FY K MR+QYAKTKSD +A DG+ P+E +KR E+
Sbjct: 65 ATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAEEA 124
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
++ A G G + G P PAPPNNILF+QN+P
Sbjct: 125 QQSGPNAAAQSNGTGYQASRLGKTSQEP------------------PAPPNNILFIQNLP 166
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLL 239
+TT M LQ+ F Q+PGF+EVRM+EAKPGIAFVEY D+ Q+ VAMQ+LQ KI +
Sbjct: 167 AETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMA 226
Query: 240 ITYAKK 245
I+YAKK
Sbjct: 227 ISYAKK 232
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 153/246 (62%), Gaps = 29/246 (11%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN T+Y+ NLNEKVK ++LK+SL+A+ Q+G IL+++A KT K +GQAW+VF ++ +
Sbjct: 5 DIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITA 64
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRE----------RRKRHEEKG 120
AT A +Q F FY K MR+QYAKT+SD +A DG+ P+E +KR E+
Sbjct: 65 ATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRRAEEA 124
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
++ A G G + G P PAPPNNILF+QN+P
Sbjct: 125 QQSGPNAAAQSNGTGYQASRLGKTSQEP------------------PAPPNNILFIQNLP 166
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLL 239
+TT M LQ+ F Q+PGF+EVRM+EAKPGIAFVEY D+ Q+ VAMQ+LQ KI +
Sbjct: 167 AETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMA 226
Query: 240 ITYAKK 245
I+YAKK
Sbjct: 227 ISYAKK 232
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 164/281 (58%), Gaps = 50/281 (17%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E N+TIYINNLNEK+K D+LK+SL+A+F QFG IL+IL + +K +GQA+++FK+V S
Sbjct: 11 ETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTS 70
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
AT A+ MQGFPFYDKPMRIQYAKT SDIIAK GT+V R+R++ E++ K ++ A
Sbjct: 71 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKR--EKRKPKSQETPAAK 128
Query: 131 QAGMGLNPAYAGAYGAT------PPLSQIP------------------------------ 154
+A G A A GA PP+ Q P
Sbjct: 129 KAVQGG--AAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 186
Query: 155 ---------YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205
PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V
Sbjct: 187 PGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 246
Query: 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
+ IAFVE+ +E+QA A +LQ KI Q + I++AKK
Sbjct: 247 GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 201 bits (510), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + AN
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNAANTQGTAAPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 200 bits (509), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 154/236 (65%), Gaps = 13/236 (5%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
+I PN+TIYINN+N+K+K ++LK+SL+A+F QFG +++I+A KT+K +GQA+++FK++ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+T A+ ++QGFPFY KPMRIQYAKT SDII+K GTF +E++K ++ + N
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
+ P A G + P Q+P PPN ILF+ N+P +T M L M
Sbjct: 122 KKPGQGTPNSANTQGNSTPNPQVP------------DYPPNYILFLNNLPEETNEMMLSM 169
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 150/244 (61%), Gaps = 6/244 (2%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
ME E A +I PN T+Y+NNL EK+ +L + L +F ++G ILEI+ K+LK +GQ
Sbjct: 1 METESA----DIPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQ 56
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKG 120
A++VFKD+ SA+ A+ +M GF F D+PM+IQY K+KSD ++K DGT++ ++R + +K
Sbjct: 57 AFIVFKDITSASNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKK 116
Query: 121 KKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP 180
K Q + GA +T + G S+ P PPN LFV+N+P
Sbjct: 117 GSNKKQDRKSTGQQQQQQKRPGAPTSTTSTTSPTTSNGTVSLQPR-DDPPNKTLFVENLP 175
Query: 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLL 239
M L M FSQF GFKEV MVE+K GIAF+E+ DE+++ AM +LQ K+ ++ ++
Sbjct: 176 DKCDSMMLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMV 235
Query: 240 ITYA 243
+++A
Sbjct: 236 VSFA 239
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 149/238 (62%), Gaps = 26/238 (10%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E+ PN TIYINNLNEK+K ++LK+SL+A+F QFG IL+I+A KTLK +GQA+++FK++ S
Sbjct: 2 EMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A+ A+ MQGFPFYDKPM+I Y+K+ SDI+AK GTF R ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKP----------- 110
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA--PPNNILFVQNVPHDTTPMAL 188
A G + P A++ P A PPN ILF+ N+P +T M L
Sbjct: 111 ------------APGTDEKKDKKKKPSSAENSNPNAQTEQPPNQILFLTNLPEETNEMML 158
Query: 189 QMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 245
M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK
Sbjct: 159 SMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1
Length = 249
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 140/238 (58%), Gaps = 18/238 (7%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
+P+ T+YI N+ EK+++ LK+ L +F +G ++++ A KTL+ +GQA++VF ++ +A+
Sbjct: 23 TPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENAS 82
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A++ +QG+P Y KPM IQY+K+KSDII V RE + E + K RK++ + +
Sbjct: 83 RALKDLQGYPLYGKPMMIQYSKSKSDII-------VQRESPEEIETRKKDRKNRREMLKR 135
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPG---GA--KSVIPEAPAPPNNILFVQNVPHDTTPMA 187
L PA A P + P P GA KS I E PPN +L +QN+P +
Sbjct: 136 TSALQPA------APKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADV 189
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
L F F GF+EVRMV + GIAFVEY + +ATVA + + Q+ +T+A+K
Sbjct: 190 LTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFARK 247
>sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B''
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=msl1 PE=1 SV=1
Length = 111
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 64/87 (73%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75
NT+Y+NNLN+K+ + L+ +L+ +F +GT+++I+A KT K +GQA +VF D ++A A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 76 EKMQGFPFYDKPMRIQYAKTKSDIIAK 102
+ ++ F F+ K M+IQYA +KS II +
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIER 90
>sp|P40567|MSL1_YEAST U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1
Length = 111
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVASATAA 74
NT+Y++ LNEK+ + +L+ +L +F FG +L++ + FK K +GQA++ + + A+ A
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFK--KQRGQAFITMRTIDQASLA 85
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDII 100
+ G F+ KP++++++K+++ +
Sbjct: 86 QISLNGERFFGKPLKVEFSKSETKTL 111
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 46/275 (16%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
AN+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 139 TANEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 193
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 194 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 250
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA------ 168
G + A G ++ YAGA G P I +P A +P P
Sbjct: 251 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAP---AIAFPQAAGLSVPAVPGALGPLT 307
Query: 169 ------------------PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPG 209
P N++L V N+ P TP L + F + V+++ K
Sbjct: 308 LTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKE 367
Query: 210 IAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
A V+ D QA +AM L ++ + L T +K
Sbjct: 368 NALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 402
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 40/272 (14%)
Query: 5 VANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQA 61
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 139 TSNEGTLLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQA 193
Query: 62 WLVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEE 118
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 194 LLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLP 250
Query: 119 KGKKRKDQHDANQAGMG----LNPAYAGAYGATP--------------------PLSQIP 154
G + A G ++ YAGA G P PL+
Sbjct: 251 TGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTS 310
Query: 155 YPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
+ IP A P N++L V N+ P TP L + F + V+++ K A
Sbjct: 311 SAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENAL 370
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L ++ + L T +K
Sbjct: 371 VQMADASQAQIAMNHLSGQRLYGKVLRATLSK 402
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 107/272 (39%), Gaps = 57/272 (20%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDL-PSG 282
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKS----------VIPEA-------------- 166
+ L+ A A+GA +S PY G S +P
Sbjct: 283 DSQPSLDQTMAAAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAA 342
Query: 167 -------------PAPPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 343 AAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENAL 402
Query: 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
VE D QA +AM L K+ + + IT +K
Sbjct: 403 VEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 434
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 109/273 (39%), Gaps = 58/273 (21%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K S + + + + R D +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNV-----------KYNNDKSRDYTRPDLPSGD 284
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGA---KSVIPEAP-----------AP------- 169
L+ A A+GA +S PY G IP+A AP
Sbjct: 285 NQP-SLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAATVSVPNVHGALAPLAIPSAA 343
Query: 170 -----------------PNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIA 211
N++L V N+ P TP +L + F + + V+++ K A
Sbjct: 344 ARAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENA 403
Query: 212 FVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
V+ D QA +AM L K+ + + IT +K
Sbjct: 404 LVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 436
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL F FG ++ K L +K + LV D + A
Sbjct: 362 NSVLLVSNLNPERVT----PQSL---FILFGVYCDVQRVKILFNKKENALVQMADGSQAQ 414
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K H+ R+ Q D
Sbjct: 415 LAMSHLNGHKLHGKPVRITLSK---------------------HQNVQLPREGQED---- 449
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 450 -QGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEEDLKILF 500
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 501 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 40/271 (14%)
Query: 6 ANQGNEI---SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAW 62
+N+G + SP I I NL V + + LH +F +FGT+L+I+ F T ++ QA
Sbjct: 169 SNEGTVLPGQSPVLRIIIENLFYPVTL----EVLHQIFSKFGTVLKIITF-TKNNQFQAL 223
Query: 63 LVFKDVASATAAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEK 119
L + D +A A + G Y+ +RI ++K S ++ D + R+ +
Sbjct: 224 LQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDFTRLDLPT 280
Query: 120 GKKRKDQHDANQAGMG----LNPAYAGAYGATPPLS-------QIPYPGGA--------- 159
G + A G ++ YAGA G P + +P GA
Sbjct: 281 GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 340
Query: 160 ----KSVIPEAPA-PPNNILFVQNV-PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213
+ IP A P N++L V N+ P TP L + F + V+++ K A V
Sbjct: 341 AVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALV 400
Query: 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+ D QA +AM L ++ + L T +K
Sbjct: 401 QMADANQAQLAMNHLSGQRLYGKVLRATLSK 431
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 292
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 293 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 352
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 353 SLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 410
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D A
Sbjct: 336 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KILFNKKENALVQMADGNQAQ 388
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K ++ +PRE Q
Sbjct: 389 LAMSHLNGHKLHGKPIRITLSKHQN--------VQLPRE------------------GQE 422
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 423 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSVSEEDLKVLF 474
Query: 193 SQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 475 SSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 14/238 (5%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 181 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 235
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 236 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 292
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPA-PPNNILFVQNV-PHDTTPM 186
A GL+ P GA S A + A N++L V N+ P TP
Sbjct: 293 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQ 352
Query: 187 ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244
+L + F + + V+++ K A V+ D QA +AM L K+ + + IT +K
Sbjct: 353 SLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 410
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 NNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLV-FKDVASAT 72
N+ + ++NLN E+V QSL +F +G + + K L +K + LV D + A
Sbjct: 336 NSVLLVSNLNPERVT----PQSLFILFGVYGDVQRV---KVLFNKKENALVQMADGSQAQ 388
Query: 73 AAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132
A+ + G + KP+RI +K +S +PRE Q
Sbjct: 389 LAMSHLNGHKLHGKPVRITLSKHQS--------VQLPRE------------------GQE 422
Query: 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFF 192
GL Y + PL + PG + PP+ L + N+P + L++ F
Sbjct: 423 DQGLTKDYGNS-----PLHRFKKPGSKNF---QNIFPPSATLHLSNIPPSISEDDLKILF 474
Query: 193 SQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAK 244
S G K + + +A ++ G +A A+ L + +G+ L ++++K
Sbjct: 475 SSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 38/252 (15%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I I+N+ V +D LH +F +FG +L+I+ F T ++ QA L + D +A
Sbjct: 178 SPVLRIIIDNMYYPVTLD----VLHQIFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQ 232
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
A + G Y+ +RI ++K V + +++ + +
Sbjct: 233 QAKLALDGQNIYNACCTLRIDFSK------------LVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 131 QAGMGLNPAYAGAY----------GATPPLSQIP-------YPGGAKSVIPEAPAPPNNI 173
L+PA A A+ GA PL+ IP + +P A N +
Sbjct: 281 DGQPALDPAIAAAFAKETSLLAVPGALSPLA-IPNAAAAAAAAAAGRVGMPGVSAGGNTV 339
Query: 174 LFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK 232
L V N+ + TP +L F + + V+++ K A ++ D Q+ +AM L K
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 233 IGQQQLLITYAK 244
+ + + +T +K
Sbjct: 400 MYGKIIRVTLSK 411
>sp|O59670|PM14_SCHPO Pre-mRNA branch site p14-like protein OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2
Length = 115
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 1 MEPEVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ 60
M P NQ N+ ++I NL+ K+ +++ + +F ++G + +I T++ +G
Sbjct: 1 MPPSTVNQ----EVNSILFIKNLSFKITAEEM----YDLFGRYGPVRQIRLGNTVQTRGT 52
Query: 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG 105
A++V+++V A A EK+ G+ F D+ + + Y + AK DG
Sbjct: 53 AFVVYENVQDARRACEKLSGYNFMDRYLVVHYYNPER---AKVDG 94
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA + F+ V A A + G Y ++I+YA
Sbjct: 185 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 242
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPA--YAGAYGATPPL 150
+ T+ ++I + ++ + ++GK R+ QA +G +P+ YG+ PL
Sbjct: 243 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ-----RQAILGEHPSSFRHDGYGSHGPL 297
Query: 151 SQIP--YPGGAKSV-------IPEAPA-------PPNNILFVQNVPHDTTPMALQMF--F 192
+P Y G++ +P+A + P +++ V + H ++F F
Sbjct: 298 LPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLF 356
Query: 193 SQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
+ ++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 357 CLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 409
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVF 65
+Q + S N TI++ L+ +V ++L+QS F QFG E+++ K KG ++ F
Sbjct: 285 GSQSDGDSSNTTIFVGGLDSEVTDEELRQS----FNQFG---EVVSVKIPAGKGCGFVQF 337
Query: 66 KDVASATAAVEKMQGFPFYDKPMRIQYAKT------KSDIIAKADGTFVPRERRKRHEEK 119
D +SA A++K+ G + +R+ + ++ ++D ++ +G + R+ +
Sbjct: 338 SDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYG 397
Query: 120 GKKRKDQHDANQAGMGLNPAYAGAYGATP 148
+ +D +GM A AYGA+
Sbjct: 398 ASQNQD------SGM---YATGAAYGASS 417
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 39/235 (16%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS 70
E + +I++ +L V L+ + + + ++ T KG ++ F D +
Sbjct: 172 ETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESE 231
Query: 71 ATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDAN 130
+ A+ +M G + MRI G P+ + HE+ ++
Sbjct: 232 RSRAMTEMNGVYCSSRAMRI--------------GVATPK-KPSAHEQY---------SS 267
Query: 131 QAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQM 190
QA + L+ YA + GA SQ N +FV + + T L+
Sbjct: 268 QAVI-LSGGYA-SNGAATHGSQ------------SDGDSSNTTIFVGGLDSEVTDEELRQ 313
Query: 191 FFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
F+QF V+ + A G FV++ D A A+Q L IG+Q + +++ +
Sbjct: 314 SFNQFGEVVSVK-IPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRS 367
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYA 93
L+ V G + I+ FK ++ QA + F+ V A A + G Y ++I+YA
Sbjct: 234 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 291
Query: 94 K-TKSDIIAKADGTFVPRERRKRHEEKGKKRKDQ-----------HDANQAGMGLNPA-- 139
+ T+ ++I + ++ + ++GK R+ Q HD + L P
Sbjct: 292 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPS 351
Query: 140 -YAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMF--FSQFP 196
Y TP L P P + S + +P +++ V + H ++F F +
Sbjct: 352 RYRMGSRDTPELVAYPLPQASSSYM-HGGSPSGSVVMVSGL-HQLKMNCSRVFNLFCLYG 409
Query: 197 GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245
++V+ ++ PG A VE GDE A+ L ++K+ ++L + +K+
Sbjct: 410 NIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQ 458
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 13/214 (6%)
Query: 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
SP I + NL V +D LH +F +FGT+L+I+ F T ++ QA L + D SA
Sbjct: 180 SPVLRIIVENLFYPVTLD----VLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQ 234
Query: 73 AAVEKMQGFPFYDK--PMRIQYAKTKS-DIIAKADGTFVPRERRKRHEEKGKKRKDQHDA 129
A + G Y+ +RI ++K S ++ D + R+ + G +
Sbjct: 235 HAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKS---RDYTRPDLPSGDSQPSLDQT 291
Query: 130 NQAGMGLN-PAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNV-PHDTTPMA 187
A GL+ P GA S ++ IP N++L V N+ P TP +
Sbjct: 292 MAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQS 351
Query: 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQA 221
L + F + + V+++ K A V+ D QA
Sbjct: 352 LFILFGVYGDVQRVKILFNKKENALVQMADGSQA 385
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 34/218 (15%)
Query: 36 LHAVFKQFGTILEILAFKTLKHKG-QAWLVFKDVASATAAVEKMQG--FPFYDKPMRIQY 92
LH VF FG + +I F+ K G QA + F D +ATAA + G P Y +
Sbjct: 130 LHLVFSAFGFVHKITTFE--KTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQ 187
Query: 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQ 152
K A D T + R R NP A A Q
Sbjct: 188 CSLKITYSAHTDLTVKFQSHRSRDYT------------------NPYLPVAPSAIDSTGQ 229
Query: 153 IPYPGGAKSVIPEAPAPPNNILF--VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI 210
+ K + PE+ N+L ++N+ + T L M F+ F +++ M + G+
Sbjct: 230 VAVGVDGKKMEPES-----NVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGV 284
Query: 211 -AFVEYGDEMQATVAMQSLQSLKI---GQQQLLITYAK 244
A ++Y D A VA ++L+ I G +L ITY++
Sbjct: 285 QALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSR 322
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1
Length = 656
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI----------LEI-LAFKTLKHK 58
+E S N+ IY+ LN+ V +D L FKQ G + + I L +T K K
Sbjct: 355 DEDSDNSAIYVQGLNDSVTLDDLAD----FFKQCGVVKMNKRTGQPMIHIYLDKETGKPK 410
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
G A + ++D +A AAVE G F +++ A+ K + + G PRE R
Sbjct: 411 GDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGG-LPPREGR 464
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAA 74
+Y+ +L+ + D L+ +F+ FG I I+ K T + KG ++ F D A A
Sbjct: 265 LYVGSLHFNITEDMLR----GIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 320
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSD 98
+E++ GF +PMR+ + + D
Sbjct: 321 LEQLNGFELAGRPMRVGHVTERLD 344
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2
Length = 655
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI----------LEI-LAFKTLKHK 58
+E S N+ IY+ LN+ V +D L FKQ G + + I L +T K K
Sbjct: 354 DEDSDNSAIYVQGLNDNVTLDDLAD----FFKQCGVVKMNKRTGQPMIHIYLDKETGKPK 409
Query: 59 GQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERR 113
G A + ++D +A AAVE G F +++ A+ K + + G PRE R
Sbjct: 410 GDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGG-MPPREGR 463
>sp|P56959|FUS_MOUSE RNA-binding protein FUS OS=Mus musculus GN=Fus PE=2 SV=1
Length = 518
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE-----------ILAFKTLKHKG 59
+ S NNTI++ L E V I +S+ FKQ G I +T K KG
Sbjct: 273 DNSDNNTIFVQGLGENVTI----ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG 328
Query: 60 QAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDI 99
+A + F D SA AA++ G F P+++ +A ++D
Sbjct: 329 EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 368
>sp|Q28009|FUS_BOVIN RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2
Length = 513
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE-----------ILAFKTLKHKG 59
+ S NNTI++ L E V I +S+ FKQ G I +T K KG
Sbjct: 267 DNSDNNTIFVQGLGENVTI----ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG 322
Query: 60 QAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDI 99
+A + F D SA AA++ G F P+++ +A ++D
Sbjct: 323 EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 362
>sp|P35637|FUS_HUMAN RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1
Length = 526
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE-----------ILAFKTLKHKG 59
+ S NNTI++ L E V I +S+ FKQ G I +T K KG
Sbjct: 280 DNSDNNTIFVQGLGENVTI----ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG 335
Query: 60 QAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDI 99
+A + F D SA AA++ G F P+++ +A ++D
Sbjct: 336 EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 375
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 166 APAPP--NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRM--VEAKPGIAFVEYGDEMQA 221
A PP N IL+++N+P+ T + F +F +++R+ G AFV Y D A
Sbjct: 11 AKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDA 70
Query: 222 TVAMQSLQSLKIGQQQLLITY 242
A + L + + L++ Y
Sbjct: 71 KTACEHLSGYNVSNRYLVVLY 91
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATA 73
+Y+ L E+V + LHA F FG I +I L ++T KH+G A++ F+ A A
Sbjct: 7 VLYVGGLAEEVD----DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 74 AVEKMQGFPFYDKPMRIQYAK 94
A++ M + + +R+ AK
Sbjct: 63 AIDNMNESELFGRTIRVNLAK 83
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAA 74
+Y+ +L+ + D L+ +F+ FG I I + +T + KG ++ F D A A
Sbjct: 252 LYVGSLHFNITEDMLR----GIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
+E++ GF +PM++ + ++D A + +F+ + +R
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTD--ASSASSFLDSDELER 346
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAA 74
+Y+ +L+ + D L+ +F+ FG I I + +T + KG ++ F D A A
Sbjct: 252 LYVGSLHFNITEDMLR----GIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
+E++ GF +PM++ + ++D A + +F+ + +R
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTD--ASSASSFLDSDELER 346
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE
PE=2 SV=1
Length = 301
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAA 74
+Y+ L E+V + LHA F FG I +I L ++T KH+G A++ F+ A AA
Sbjct: 8 LYVGGLAEEVD----DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 75 VEKMQGFPFYDKPMRIQYAK 94
++ M + + +R+ AK
Sbjct: 64 IDNMNESELFGRTIRVNLAK 83
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAA 74
+Y+ +L+ + D L+ +F+ FG I I + +T + KG ++ F D A A
Sbjct: 252 LYVGSLHFNITEDMLR----GIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKR 115
+E++ GF +PM++ + ++D A + +F+ + +R
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTD--ASSASSFLDSDELER 346
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE
PE=1 SV=1
Length = 301
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATA 73
+Y+ L E+V + LHA F FG I +I L ++T KH+G A++ F+ A A
Sbjct: 7 VLYVGGLAEEVD----DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 74 AVEKMQGFPFYDKPMRIQYAK 94
A++ M + + +R+ AK
Sbjct: 63 AIDNMNESELFGRTIRVNLAK 83
>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie
PE=2 SV=2
Length = 301
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAA 74
+Y+ L E+V + LHA F FG I +I L ++T KH+G A++ F+ A AA
Sbjct: 8 LYVGGLAEEVD----DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 75 VEKMQGFPFYDKPMRIQYAK 94
++ M + + +R+ AK
Sbjct: 64 IDNMNESELFGRTIRVNLAK 83
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 14 PNNT-IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASAT 72
PNNT ++I L+ V D+L+ A F+ FGTI+ + K K ++ + D SA
Sbjct: 310 PNNTTVFIGGLSSLVTEDELR----AYFQPFGTIVYV---KIPVGKCCGFVQYVDRLSAE 362
Query: 73 AAVEKMQGFPFYDKPMRIQYAKT 95
AA+ MQGFP + +R+ + ++
Sbjct: 363 AAIAGMQGFPIANSRVRLSWGRS 385
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,737,748
Number of Sequences: 539616
Number of extensions: 4102321
Number of successful extensions: 15617
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 15172
Number of HSP's gapped (non-prelim): 720
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)