Query 025982
Match_columns 245
No_of_seqs 115 out of 1834
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.6E-33 1.9E-37 232.6 23.5 227 14-244 2-347 (352)
2 TIGR01659 sex-lethal sex-letha 100.0 1.4E-32 3.1E-37 227.3 21.2 162 11-245 103-274 (346)
3 KOG0148 Apoptosis-promoting RN 100.0 1.8E-31 3.9E-36 203.9 16.5 176 12-245 59-237 (321)
4 TIGR01645 half-pint poly-U bin 100.0 3.8E-31 8.3E-36 229.7 19.1 170 13-244 105-282 (612)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.8E-29 4E-34 219.4 23.1 219 16-245 97-350 (481)
6 TIGR01622 SF-CC1 splicing fact 100.0 1.1E-29 2.4E-34 220.7 21.6 171 12-244 86-264 (457)
7 KOG4206 Spliceosomal protein s 100.0 1.2E-29 2.6E-34 190.3 18.3 216 11-245 5-221 (221)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-28 2.8E-33 214.2 22.2 194 13-244 273-478 (481)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.9E-28 4.2E-33 212.6 19.6 222 12-244 55-305 (578)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.8E-28 3.8E-33 217.9 19.5 179 12-245 175-363 (562)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.6E-28 7.7E-33 216.0 18.6 157 17-244 2-165 (562)
12 KOG0117 Heterogeneous nuclear 100.0 5.7E-28 1.2E-32 196.3 17.5 222 7-244 75-329 (506)
13 KOG0145 RNA-binding protein EL 100.0 1.8E-27 3.8E-32 181.3 18.1 226 12-243 38-355 (360)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.3E-27 7.2E-32 207.8 21.2 190 11-244 171-373 (509)
15 KOG0144 RNA-binding protein CU 100.0 6.2E-28 1.4E-32 195.3 11.7 161 11-243 30-203 (510)
16 KOG0131 Splicing factor 3b, su 100.0 1.1E-27 2.4E-32 173.2 11.5 160 14-245 8-176 (203)
17 TIGR01622 SF-CC1 splicing fact 99.9 7.4E-26 1.6E-30 196.7 23.7 226 13-243 184-445 (457)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.6E-26 1.4E-30 199.6 21.4 186 13-243 293-499 (509)
19 KOG0127 Nucleolar protein fibr 99.9 2.5E-26 5.4E-31 190.9 14.8 181 16-243 6-193 (678)
20 KOG0127 Nucleolar protein fibr 99.9 1.1E-24 2.5E-29 181.1 18.6 226 14-243 116-375 (678)
21 KOG0109 RNA-binding protein LA 99.9 4E-25 8.6E-30 170.9 9.9 145 16-243 3-147 (346)
22 KOG0110 RNA-binding protein (R 99.9 5.7E-24 1.2E-28 182.0 12.4 164 17-244 517-691 (725)
23 KOG0144 RNA-binding protein CU 99.9 1.2E-22 2.6E-27 164.8 13.3 83 13-99 122-209 (510)
24 KOG0146 RNA-binding protein ET 99.9 4.3E-22 9.4E-27 152.5 15.5 228 13-244 17-363 (371)
25 KOG0123 Polyadenylate-binding 99.9 4E-22 8.7E-27 166.1 16.4 147 16-244 2-151 (369)
26 TIGR01645 half-pint poly-U bin 99.9 5.6E-21 1.2E-25 166.6 22.9 80 14-97 203-285 (612)
27 KOG1190 Polypyrimidine tract-b 99.9 2.1E-21 4.6E-26 156.6 15.4 216 15-244 150-371 (492)
28 KOG0105 Alternative splicing f 99.9 5.4E-21 1.2E-25 138.9 14.7 173 13-234 4-176 (241)
29 KOG0124 Polypyrimidine tract-b 99.9 1.6E-21 3.6E-26 155.4 11.6 165 16-242 114-286 (544)
30 KOG0147 Transcriptional coacti 99.9 2.4E-21 5.2E-26 161.8 11.9 220 13-243 276-525 (549)
31 KOG0123 Polyadenylate-binding 99.9 1.4E-20 3E-25 156.9 14.0 161 18-245 79-245 (369)
32 KOG1456 Heterogeneous nuclear 99.8 6E-19 1.3E-23 141.1 19.6 224 10-245 115-362 (494)
33 KOG1457 RNA binding protein (c 99.8 4E-19 8.6E-24 133.0 14.8 213 14-234 33-274 (284)
34 KOG0110 RNA-binding protein (R 99.8 4.8E-18 1.1E-22 145.9 14.1 208 11-244 381-596 (725)
35 KOG1548 Transcription elongati 99.8 2.5E-17 5.4E-22 130.7 17.0 196 12-242 131-348 (382)
36 KOG0147 Transcriptional coacti 99.8 5.2E-19 1.1E-23 148.0 7.7 169 15-243 179-355 (549)
37 KOG0148 Apoptosis-promoting RN 99.8 1.5E-18 3.2E-23 133.4 9.6 74 172-245 63-141 (321)
38 KOG1190 Polypyrimidine tract-b 99.8 4.3E-17 9.3E-22 131.9 15.4 188 15-244 297-489 (492)
39 KOG0124 Polypyrimidine tract-b 99.8 5.2E-17 1.1E-21 129.9 15.4 82 12-97 207-291 (544)
40 KOG4205 RNA-binding protein mu 99.7 7.5E-18 1.6E-22 136.1 9.5 162 14-244 5-174 (311)
41 PLN03134 glycine-rich RNA-bind 99.7 4.8E-17 1E-21 118.8 12.7 75 170-244 33-112 (144)
42 KOG0106 Alternative splicing f 99.7 6.9E-18 1.5E-22 128.4 6.6 166 16-242 2-167 (216)
43 PLN03134 glycine-rich RNA-bind 99.7 5.9E-17 1.3E-21 118.3 11.1 82 12-97 31-115 (144)
44 KOG4211 Splicing factor hnRNP- 99.7 7.1E-15 1.5E-19 122.0 16.4 165 12-241 7-177 (510)
45 PF00076 RRM_1: RNA recognitio 99.7 7.2E-16 1.6E-20 98.9 8.2 66 174-239 1-70 (70)
46 PF00076 RRM_1: RNA recognitio 99.6 8.3E-16 1.8E-20 98.6 7.5 68 18-89 1-70 (70)
47 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.2E-15 2.7E-20 128.4 10.8 80 14-97 268-350 (352)
48 KOG0114 Predicted RNA-binding 99.6 1.8E-15 3.9E-20 100.0 8.7 82 12-97 15-96 (124)
49 KOG0107 Alternative splicing f 99.6 8.2E-16 1.8E-20 111.2 7.7 75 170-244 9-83 (195)
50 KOG0107 Alternative splicing f 99.6 1.1E-15 2.4E-20 110.5 7.1 80 13-98 8-87 (195)
51 TIGR01648 hnRNP-R-Q heterogene 99.6 3.6E-15 7.8E-20 130.3 11.3 137 13-199 231-369 (578)
52 TIGR01659 sex-lethal sex-letha 99.6 3.1E-15 6.7E-20 124.3 10.4 78 167-244 103-185 (346)
53 PLN03120 nucleic acid binding 99.6 6.5E-15 1.4E-19 115.1 10.2 73 171-244 4-78 (260)
54 PLN03120 nucleic acid binding 99.6 6E-15 1.3E-19 115.3 9.6 76 15-95 4-79 (260)
55 KOG0120 Splicing factor U2AF, 99.6 7.4E-15 1.6E-19 124.5 10.9 179 15-242 289-488 (500)
56 PF13893 RRM_5: RNA recognitio 99.6 1.7E-14 3.6E-19 88.3 8.8 56 188-243 1-56 (56)
57 PF14259 RRM_6: RNA recognitio 99.6 1.8E-14 3.8E-19 92.5 9.2 66 174-239 1-70 (70)
58 KOG4212 RNA-binding protein hn 99.6 2.6E-13 5.5E-18 111.3 17.5 74 170-243 535-608 (608)
59 KOG0121 Nuclear cap-binding pr 99.6 6.6E-15 1.4E-19 101.1 6.9 73 170-242 35-112 (153)
60 KOG0122 Translation initiation 99.6 1.4E-14 3E-19 110.2 8.5 78 15-96 189-269 (270)
61 KOG0125 Ataxin 2-binding prote 99.6 2.2E-14 4.9E-19 113.4 9.6 72 172-243 97-171 (376)
62 KOG0121 Nuclear cap-binding pr 99.5 1.3E-14 2.9E-19 99.6 6.6 82 12-97 33-117 (153)
63 PF14259 RRM_6: RNA recognitio 99.5 3.8E-14 8.3E-19 91.0 8.2 68 18-89 1-70 (70)
64 KOG4212 RNA-binding protein hn 99.5 5.3E-13 1.2E-17 109.4 16.6 218 12-242 41-290 (608)
65 KOG0114 Predicted RNA-binding 99.5 1.1E-13 2.5E-18 91.5 10.2 73 170-242 17-91 (124)
66 KOG1456 Heterogeneous nuclear 99.5 3.1E-13 6.7E-18 108.7 13.9 169 7-244 23-197 (494)
67 PLN03121 nucleic acid binding 99.5 7.4E-14 1.6E-18 107.5 9.4 77 14-95 4-80 (243)
68 COG0724 RNA-binding proteins ( 99.5 1.6E-13 3.5E-18 111.3 11.6 142 15-206 115-260 (306)
69 smart00362 RRM_2 RNA recogniti 99.5 1.6E-13 3.5E-18 87.8 9.1 69 173-241 1-72 (72)
70 PLN03121 nucleic acid binding 99.5 2E-13 4.4E-18 105.1 10.5 73 170-243 4-78 (243)
71 PLN03213 repressor of silencin 99.5 1.1E-13 2.4E-18 115.1 9.6 75 170-244 9-86 (759)
72 KOG4206 Spliceosomal protein s 99.5 1.2E-13 2.6E-18 104.4 7.4 76 170-245 8-89 (221)
73 KOG0125 Ataxin 2-binding prote 99.5 1.4E-13 3E-18 108.9 8.0 79 15-97 96-175 (376)
74 PLN03213 repressor of silencin 99.5 1.8E-13 3.8E-18 113.8 8.9 79 12-96 7-88 (759)
75 KOG0122 Translation initiation 99.5 2.7E-13 5.8E-18 103.3 8.8 75 170-244 188-267 (270)
76 KOG0145 RNA-binding protein EL 99.5 8.9E-13 1.9E-17 101.4 10.7 75 170-244 40-119 (360)
77 PF13893 RRM_5: RNA recognitio 99.5 4.9E-13 1.1E-17 81.8 7.6 56 36-93 1-56 (56)
78 smart00362 RRM_2 RNA recogniti 99.4 6.2E-13 1.3E-17 85.1 8.4 70 17-90 1-71 (72)
79 KOG4207 Predicted splicing fac 99.4 1.3E-13 2.9E-18 102.4 5.7 73 172-244 14-91 (256)
80 cd00590 RRM RRM (RNA recogniti 99.4 1.4E-12 3.1E-17 83.9 9.6 70 173-242 1-74 (74)
81 KOG0126 Predicted RNA-binding 99.4 1.8E-14 3.8E-19 104.9 -0.0 77 14-94 34-113 (219)
82 KOG0126 Predicted RNA-binding 99.4 2.3E-14 5E-19 104.3 0.1 73 170-242 34-111 (219)
83 KOG0130 RNA-binding protein RB 99.4 4.8E-13 1E-17 92.8 5.8 77 14-94 71-150 (170)
84 KOG0108 mRNA cleavage and poly 99.4 5.7E-13 1.2E-17 112.5 7.3 79 16-98 19-100 (435)
85 KOG0113 U1 small nuclear ribon 99.4 1.8E-12 3.9E-17 101.5 8.9 79 11-93 97-178 (335)
86 smart00360 RRM RNA recognition 99.4 2.2E-12 4.7E-17 82.2 7.8 66 176-241 1-71 (71)
87 KOG0113 U1 small nuclear ribon 99.4 4E-12 8.7E-17 99.5 10.1 75 169-243 99-178 (335)
88 KOG0130 RNA-binding protein RB 99.4 1.3E-12 2.7E-17 90.7 6.3 74 170-243 71-149 (170)
89 KOG0149 Predicted RNA-binding 99.4 1.1E-12 2.3E-17 99.7 6.3 77 14-95 11-90 (247)
90 KOG0120 Splicing factor U2AF, 99.4 3E-12 6.5E-17 108.9 9.6 183 7-243 167-366 (500)
91 KOG0131 Splicing factor 3b, su 99.4 1E-12 2.2E-17 95.9 5.6 75 170-244 8-87 (203)
92 KOG4207 Predicted splicing fac 99.4 1.2E-12 2.6E-17 97.4 6.0 81 10-94 8-91 (256)
93 KOG1365 RNA-binding protein Fu 99.4 4.3E-12 9.3E-17 102.5 9.3 182 16-240 162-356 (508)
94 KOG0111 Cyclophilin-type pepti 99.4 6.7E-13 1.4E-17 99.6 4.3 80 14-97 9-91 (298)
95 cd00590 RRM RRM (RNA recogniti 99.3 8.7E-12 1.9E-16 80.1 8.9 72 17-92 1-74 (74)
96 smart00360 RRM RNA recognition 99.3 5.8E-12 1.3E-16 80.2 7.3 68 20-91 1-71 (71)
97 KOG0111 Cyclophilin-type pepti 99.3 1E-12 2.2E-17 98.7 4.0 75 170-244 9-88 (298)
98 KOG0105 Alternative splicing f 99.3 2.9E-12 6.3E-17 93.7 6.2 75 170-244 5-81 (241)
99 COG0724 RNA-binding proteins ( 99.3 1.8E-11 3.9E-16 99.2 9.6 74 171-244 115-193 (306)
100 KOG0108 mRNA cleavage and poly 99.3 1.1E-11 2.3E-16 104.9 8.0 73 172-244 19-96 (435)
101 KOG0149 Predicted RNA-binding 99.3 7.6E-12 1.7E-16 95.0 6.2 72 171-243 12-88 (247)
102 KOG0117 Heterogeneous nuclear 99.3 3.6E-11 7.9E-16 99.0 10.2 75 169-243 81-161 (506)
103 smart00361 RRM_1 RNA recogniti 99.2 4.1E-11 8.8E-16 76.7 7.5 57 185-241 2-70 (70)
104 KOG4211 Splicing factor hnRNP- 99.2 5.8E-10 1.3E-14 93.2 15.0 215 14-236 102-348 (510)
105 KOG0112 Large RNA-binding prot 99.2 7.6E-12 1.6E-16 110.8 4.1 159 10-244 367-529 (975)
106 smart00361 RRM_1 RNA recogniti 99.2 7.2E-11 1.6E-15 75.5 7.6 62 29-90 2-69 (70)
107 KOG0132 RNA polymerase II C-te 99.2 5.5E-11 1.2E-15 103.9 8.4 75 169-244 419-493 (894)
108 KOG0153 Predicted RNA-binding 99.2 1.3E-10 2.8E-15 93.1 8.9 76 168-244 225-301 (377)
109 KOG0129 Predicted RNA-binding 99.2 1.1E-09 2.3E-14 92.2 14.3 155 13-227 257-432 (520)
110 KOG0109 RNA-binding protein LA 99.2 4.3E-11 9.4E-16 93.6 5.6 80 8-96 71-150 (346)
111 KOG0415 Predicted peptidyl pro 99.1 9.4E-11 2E-15 94.0 6.5 78 167-244 235-317 (479)
112 PF11608 Limkain-b1: Limkain b 99.1 3.3E-10 7.1E-15 72.4 7.6 75 16-97 3-78 (90)
113 KOG4208 Nucleolar RNA-binding 99.1 7.2E-10 1.6E-14 82.8 8.0 81 12-96 46-130 (214)
114 KOG0415 Predicted peptidyl pro 99.1 2.1E-10 4.5E-15 92.1 5.4 81 12-96 236-319 (479)
115 KOG4660 Protein Mei2, essentia 99.0 2.7E-10 5.9E-15 96.5 5.4 179 9-243 69-247 (549)
116 KOG4454 RNA binding protein (R 99.0 7.8E-11 1.7E-15 88.6 1.5 78 10-92 4-83 (267)
117 KOG0132 RNA polymerase II C-te 99.0 9.8E-10 2.1E-14 96.3 7.8 76 15-97 421-496 (894)
118 KOG4660 Protein Mei2, essentia 98.9 1.4E-09 2.9E-14 92.3 5.4 76 164-239 68-143 (549)
119 KOG4676 Splicing factor, argin 98.9 2.1E-09 4.4E-14 87.5 5.7 187 17-234 9-214 (479)
120 PF04059 RRM_2: RNA recognitio 98.9 1.8E-08 3.9E-13 67.7 9.3 81 16-98 2-89 (97)
121 KOG4208 Nucleolar RNA-binding 98.9 9.6E-09 2.1E-13 76.9 7.7 73 170-242 48-126 (214)
122 KOG0153 Predicted RNA-binding 98.9 9.7E-09 2.1E-13 82.5 7.5 78 11-95 224-302 (377)
123 KOG0146 RNA-binding protein ET 98.8 4.2E-09 9.1E-14 81.7 5.1 83 11-97 281-366 (371)
124 KOG4307 RNA binding protein RB 98.8 6.3E-08 1.4E-12 84.3 12.2 70 173-242 869-943 (944)
125 KOG4210 Nuclear localization s 98.8 6.1E-09 1.3E-13 84.3 5.8 168 13-244 86-262 (285)
126 KOG0151 Predicted splicing reg 98.8 3.4E-08 7.3E-13 86.1 9.1 78 167-244 170-255 (877)
127 KOG0128 RNA-binding protein SA 98.8 5.5E-10 1.2E-14 98.8 -1.8 137 15-241 667-810 (881)
128 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.8E-08 3.8E-13 85.9 6.8 74 171-244 405-483 (940)
129 KOG1457 RNA binding protein (c 98.7 2.2E-07 4.7E-12 70.5 11.1 74 171-244 34-116 (284)
130 KOG4307 RNA binding protein RB 98.7 8E-08 1.7E-12 83.7 9.9 192 14-241 310-509 (944)
131 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.4E-08 7.5E-13 84.2 7.5 81 13-97 403-486 (940)
132 KOG0533 RRM motif-containing p 98.7 5E-08 1.1E-12 76.4 7.7 78 15-96 83-162 (243)
133 KOG0226 RNA-binding proteins [ 98.7 1.9E-08 4.1E-13 77.6 3.9 161 15-240 96-264 (290)
134 PF04059 RRM_2: RNA recognitio 98.7 2.9E-07 6.2E-12 61.9 8.9 73 172-244 2-85 (97)
135 KOG2193 IGF-II mRNA-binding pr 98.7 2.6E-09 5.5E-14 87.8 -1.3 147 16-242 2-153 (584)
136 KOG1548 Transcription elongati 98.6 9.4E-08 2E-12 76.9 7.3 75 170-244 133-219 (382)
137 KOG0106 Alternative splicing f 98.6 2.7E-08 5.9E-13 76.2 3.9 69 173-244 3-71 (216)
138 KOG1365 RNA-binding protein Fu 98.6 1.8E-06 4E-11 70.5 14.2 157 12-227 57-225 (508)
139 KOG0533 RRM motif-containing p 98.6 2.3E-07 5E-12 72.7 7.9 73 171-243 83-159 (243)
140 PF08777 RRM_3: RNA binding mo 98.6 1.6E-07 3.6E-12 64.6 6.3 69 172-241 2-75 (105)
141 KOG4205 RNA-binding protein mu 98.6 1.1E-07 2.5E-12 77.4 5.6 80 15-99 97-179 (311)
142 KOG0116 RasGAP SH3 binding pro 98.6 1.4E-07 3E-12 79.8 6.2 76 15-95 288-366 (419)
143 PF11608 Limkain-b1: Limkain b 98.5 8.3E-07 1.8E-11 57.0 7.3 68 172-244 3-75 (90)
144 KOG0226 RNA-binding proteins [ 98.5 2.3E-07 5.1E-12 71.7 4.9 75 14-92 189-266 (290)
145 KOG0151 Predicted splicing reg 98.4 4.7E-07 1E-11 79.2 6.3 80 12-95 171-256 (877)
146 KOG4209 Splicing factor RNPS1, 98.4 9.9E-07 2.1E-11 69.3 6.2 74 170-244 100-178 (231)
147 KOG0116 RasGAP SH3 binding pro 98.4 9.7E-07 2.1E-11 74.7 6.5 70 172-242 289-363 (419)
148 KOG4209 Splicing factor RNPS1, 98.3 1.2E-06 2.6E-11 68.8 5.8 80 12-96 98-180 (231)
149 KOG4454 RNA binding protein (R 98.3 3.2E-07 6.9E-12 69.4 2.2 73 170-242 8-83 (267)
150 KOG2314 Translation initiation 97.9 4.7E-05 1E-09 65.4 8.0 82 13-94 56-142 (698)
151 COG5175 MOT2 Transcriptional r 97.9 2.7E-05 5.9E-10 62.8 5.8 82 15-96 114-203 (480)
152 KOG1995 Conserved Zn-finger pr 97.9 2.2E-05 4.7E-10 63.9 5.2 77 169-245 64-153 (351)
153 KOG1995 Conserved Zn-finger pr 97.9 2.1E-05 4.5E-10 64.0 4.7 87 7-97 58-155 (351)
154 PF08952 DUF1866: Domain of un 97.8 0.00013 2.9E-09 52.4 7.7 78 12-95 24-106 (146)
155 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00019 4.1E-09 48.7 7.7 70 172-243 7-89 (100)
156 PF08777 RRM_3: RNA binding mo 97.8 0.00012 2.6E-09 50.4 6.8 73 16-95 2-79 (105)
157 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00013 2.8E-09 43.5 5.0 52 16-75 2-53 (53)
158 PF08952 DUF1866: Domain of un 97.7 0.00052 1.1E-08 49.4 8.9 72 167-242 23-103 (146)
159 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00017 3.6E-09 43.0 5.1 52 172-225 2-53 (53)
160 KOG2202 U2 snRNP splicing fact 97.6 2.9E-05 6.2E-10 60.5 1.9 58 186-243 83-145 (260)
161 KOG1855 Predicted RNA-binding 97.6 4.5E-05 9.8E-10 63.4 2.8 66 169-234 229-312 (484)
162 KOG3152 TBP-binding protein, a 97.6 3.9E-05 8.5E-10 59.7 2.3 67 171-237 74-157 (278)
163 KOG2314 Translation initiation 97.6 0.00025 5.4E-09 61.1 7.0 72 170-241 57-139 (698)
164 PF08675 RNA_bind: RNA binding 97.6 0.00068 1.5E-08 43.7 7.3 58 13-80 7-64 (87)
165 COG5175 MOT2 Transcriptional r 97.6 0.00024 5.3E-09 57.5 6.5 74 170-243 113-200 (480)
166 KOG3152 TBP-binding protein, a 97.5 5.8E-05 1.3E-09 58.7 2.6 69 14-86 73-156 (278)
167 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00044 9.5E-09 46.9 5.6 74 15-94 6-90 (100)
168 KOG1996 mRNA splicing factor [ 97.4 0.00053 1.1E-08 54.5 6.4 73 170-242 280-363 (378)
169 PF15023 DUF4523: Protein of u 97.3 0.0022 4.7E-08 45.7 8.3 80 10-95 81-161 (166)
170 KOG4210 Nuclear localization s 97.3 0.00017 3.7E-09 58.7 2.9 79 15-98 184-266 (285)
171 KOG0115 RNA-binding protein p5 97.3 0.00096 2.1E-08 52.1 6.7 61 172-232 32-96 (275)
172 KOG2416 Acinus (induces apopto 97.3 0.00034 7.3E-09 60.7 4.3 77 167-244 440-520 (718)
173 KOG0128 RNA-binding protein SA 97.1 2.1E-05 4.6E-10 70.5 -4.8 159 13-234 569-735 (881)
174 PF08675 RNA_bind: RNA binding 97.0 0.0085 1.9E-07 38.7 7.8 57 170-230 8-64 (87)
175 KOG1855 Predicted RNA-binding 97.0 0.00063 1.4E-08 56.8 3.1 66 12-81 228-309 (484)
176 KOG0112 Large RNA-binding prot 96.9 0.0014 3.1E-08 59.6 5.0 78 11-95 451-530 (975)
177 PF15023 DUF4523: Protein of u 96.9 0.0071 1.5E-07 43.2 7.4 73 169-244 84-160 (166)
178 PF07576 BRAP2: BRCA1-associat 96.9 0.026 5.7E-07 39.1 9.9 78 13-94 10-93 (110)
179 KOG2202 U2 snRNP splicing fact 96.9 0.00089 1.9E-08 52.4 2.9 54 42-95 92-147 (260)
180 KOG4676 Splicing factor, argin 96.8 0.0016 3.5E-08 53.9 4.2 68 173-241 9-84 (479)
181 KOG2416 Acinus (induces apopto 96.8 0.0015 3.2E-08 56.9 4.0 82 8-96 437-522 (718)
182 KOG0115 RNA-binding protein p5 96.6 0.0083 1.8E-07 47.0 6.6 73 16-92 32-110 (275)
183 PF10309 DUF2414: Protein of u 96.6 0.017 3.6E-07 35.4 6.6 53 173-228 7-62 (62)
184 KOG0129 Predicted RNA-binding 96.6 0.0083 1.8E-07 51.5 6.9 66 8-77 363-432 (520)
185 PF04847 Calcipressin: Calcipr 96.4 0.012 2.7E-07 44.7 6.4 61 183-244 7-69 (184)
186 KOG2193 IGF-II mRNA-binding pr 96.4 0.004 8.6E-08 52.2 3.9 68 173-243 3-73 (584)
187 KOG4574 RNA-binding protein (c 96.3 0.006 1.3E-07 55.4 4.9 70 174-244 301-372 (1007)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.0077 1.7E-07 45.6 4.8 80 12-95 4-97 (176)
189 PF03880 DbpA: DbpA RNA bindin 96.3 0.02 4.3E-07 36.7 6.0 65 174-243 3-74 (74)
190 KOG1996 mRNA splicing factor [ 96.3 0.014 3.1E-07 46.6 6.3 68 28-95 295-366 (378)
191 KOG4849 mRNA cleavage factor I 96.2 0.0068 1.5E-07 49.6 4.4 76 15-92 80-158 (498)
192 PF07576 BRAP2: BRCA1-associat 96.2 0.094 2E-06 36.3 9.4 64 171-234 13-80 (110)
193 PF10309 DUF2414: Protein of u 96.0 0.072 1.6E-06 32.6 7.2 56 16-78 6-62 (62)
194 KOG0804 Cytoplasmic Zn-finger 95.8 0.041 8.9E-07 46.7 7.1 65 170-234 73-141 (493)
195 PF11767 SET_assoc: Histone ly 95.7 0.089 1.9E-06 32.7 6.6 56 181-240 10-65 (66)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.027 5.9E-07 42.6 4.8 64 171-234 7-81 (176)
197 KOG2253 U1 snRNP complex, subu 95.5 0.026 5.5E-07 50.1 5.2 68 169-240 38-105 (668)
198 KOG0804 Cytoplasmic Zn-finger 95.4 0.082 1.8E-06 44.9 7.5 79 11-93 70-153 (493)
199 KOG2068 MOT2 transcription fac 95.2 0.0078 1.7E-07 49.1 0.9 82 15-97 77-164 (327)
200 KOG4285 Mitotic phosphoprotein 94.9 0.2 4.3E-06 40.5 8.1 75 15-98 197-272 (350)
201 PF04847 Calcipressin: Calcipr 94.5 0.09 1.9E-06 40.0 5.0 62 31-95 7-70 (184)
202 KOG2591 c-Mpl binding protein, 94.2 0.098 2.1E-06 45.7 5.3 69 170-240 174-246 (684)
203 PF11767 SET_assoc: Histone ly 94.2 0.24 5.3E-06 30.8 5.6 55 26-90 11-65 (66)
204 KOG4849 mRNA cleavage factor I 93.9 0.14 3.1E-06 42.1 5.3 67 171-237 80-153 (498)
205 KOG4285 Mitotic phosphoprotein 93.5 0.17 3.8E-06 40.8 5.2 61 174-237 200-260 (350)
206 KOG2135 Proteins containing th 93.2 0.074 1.6E-06 45.5 2.7 73 169-243 370-443 (526)
207 KOG4574 RNA-binding protein (c 93.0 0.08 1.7E-06 48.5 2.8 73 18-97 301-375 (1007)
208 KOG2318 Uncharacterized conser 91.8 1.1 2.5E-05 39.5 8.1 73 169-241 172-303 (650)
209 PF10567 Nab6_mRNP_bdg: RNA-re 91.7 6.3 0.00014 32.1 14.3 82 9-94 9-106 (309)
210 KOG2068 MOT2 transcription fac 91.2 0.066 1.4E-06 43.8 0.2 72 172-243 78-160 (327)
211 PF03880 DbpA: DbpA RNA bindin 90.0 2.1 4.5E-05 27.2 6.3 62 26-93 12-74 (74)
212 KOG2135 Proteins containing th 88.0 0.32 6.9E-06 41.8 1.9 74 16-97 373-447 (526)
213 KOG2253 U1 snRNP complex, subu 87.8 0.46 9.9E-06 42.5 2.7 73 10-92 35-107 (668)
214 KOG2591 c-Mpl binding protein, 86.7 1.7 3.6E-05 38.4 5.4 66 15-88 175-244 (684)
215 PF07292 NID: Nmi/IFP 35 domai 86.4 0.78 1.7E-05 30.3 2.6 23 170-192 51-73 (88)
216 PF10567 Nab6_mRNP_bdg: RNA-re 83.2 3.2 6.8E-05 33.7 5.2 73 171-243 15-105 (309)
217 PF14893 PNMA: PNMA 83.1 1.2 2.5E-05 37.3 2.9 53 14-67 17-71 (331)
218 PRK14548 50S ribosomal protein 78.2 9.6 0.00021 25.0 5.4 56 19-76 24-79 (84)
219 KOG3424 40S ribosomal protein 76.6 12 0.00027 26.0 5.7 48 26-74 34-85 (132)
220 KOG4410 5-formyltetrahydrofola 74.9 8.4 0.00018 31.2 5.2 55 9-69 324-378 (396)
221 PF14111 DUF4283: Domain of un 73.2 4.6 9.9E-05 29.4 3.3 111 26-205 28-139 (153)
222 TIGR03636 L23_arch archaeal ri 69.1 25 0.00054 22.6 5.5 57 18-76 16-72 (77)
223 PF15513 DUF4651: Domain of un 67.7 22 0.00048 21.7 4.7 24 29-52 4-27 (62)
224 KOG2318 Uncharacterized conser 67.1 68 0.0015 29.0 9.3 83 12-94 171-306 (650)
225 KOG4483 Uncharacterized conser 66.6 15 0.00032 31.3 5.1 65 171-238 391-456 (528)
226 PF03468 XS: XS domain; Inter 65.3 9.2 0.0002 26.8 3.3 47 173-220 10-68 (116)
227 KOG4019 Calcineurin-mediated s 65.3 6.8 0.00015 29.5 2.7 69 174-243 13-87 (193)
228 PF07292 NID: Nmi/IFP 35 domai 63.2 1.8 4E-05 28.6 -0.5 22 12-33 49-70 (88)
229 PRK01178 rps24e 30S ribosomal 61.5 48 0.001 22.5 6.5 48 26-74 30-81 (99)
230 COG5638 Uncharacterized conser 61.1 58 0.0013 28.0 7.6 37 169-205 144-185 (622)
231 KOG4213 RNA-binding protein La 59.6 4.9 0.00011 30.2 1.1 66 15-89 111-180 (205)
232 PF03468 XS: XS domain; Inter 57.4 15 0.00033 25.6 3.2 55 18-76 11-75 (116)
233 PTZ00071 40S ribosomal protein 55.2 72 0.0015 22.9 6.3 48 26-74 35-87 (132)
234 KOG4410 5-formyltetrahydrofola 53.5 66 0.0014 26.3 6.5 48 170-218 329-377 (396)
235 KOG1295 Nonsense-mediated deca 50.2 23 0.00051 30.0 3.7 62 173-234 9-78 (376)
236 KOG4019 Calcineurin-mediated s 43.7 40 0.00087 25.6 3.7 76 17-95 12-89 (193)
237 COG0445 GidA Flavin-dependent 42.9 39 0.00085 30.5 4.1 22 15-36 301-322 (621)
238 PF11823 DUF3343: Protein of u 40.4 45 0.00098 20.9 3.2 28 209-236 2-29 (73)
239 cd06404 PB1_aPKC PB1 domain is 40.1 1.1E+02 0.0023 20.1 8.2 70 16-90 9-80 (83)
240 PRK08559 nusG transcription an 38.4 1.3E+02 0.0028 22.0 5.8 51 28-80 17-68 (153)
241 PF11823 DUF3343: Protein of u 38.4 56 0.0012 20.4 3.4 29 59-87 2-30 (73)
242 KOG1295 Nonsense-mediated deca 37.9 42 0.00092 28.5 3.4 67 14-84 6-78 (376)
243 PF02714 DUF221: Domain of unk 36.6 55 0.0012 27.2 4.0 36 61-98 1-36 (325)
244 KOG4483 Uncharacterized conser 35.2 95 0.0021 26.7 5.0 54 15-77 391-446 (528)
245 PF03439 Spt5-NGN: Early trans 35.1 81 0.0018 20.4 3.9 34 197-230 33-66 (84)
246 KOG2891 Surface glycoprotein [ 34.7 60 0.0013 26.4 3.7 37 9-49 143-191 (445)
247 PF00403 HMA: Heavy-metal-asso 34.0 1E+02 0.0022 18.1 6.4 54 173-227 1-58 (62)
248 KOG0156 Cytochrome P450 CYP2 s 33.5 1E+02 0.0022 27.6 5.3 62 19-88 36-97 (489)
249 PF01071 GARS_A: Phosphoribosy 33.2 1.7E+02 0.0036 22.6 5.8 60 28-92 25-87 (194)
250 PF02829 3H: 3H domain; Inter 32.7 1.6E+02 0.0034 19.9 5.5 50 31-80 9-58 (98)
251 COG5193 LHP1 La protein, small 31.4 26 0.00056 30.0 1.2 64 13-76 172-244 (438)
252 PHA01632 hypothetical protein 29.8 56 0.0012 19.4 2.1 20 174-193 19-38 (64)
253 PRK09631 DNA topoisomerase IV 29.7 3.4E+02 0.0075 25.3 8.0 59 15-77 220-281 (635)
254 PF01282 Ribosomal_S24e: Ribos 29.1 1.7E+02 0.0036 19.1 5.7 48 25-73 11-62 (84)
255 PHA03008 hypothetical protein; 28.5 1.1E+02 0.0024 23.6 4.0 39 170-208 20-58 (234)
256 PTZ00191 60S ribosomal protein 27.8 2.5E+02 0.0053 20.6 5.6 52 19-74 85-138 (145)
257 PRK08559 nusG transcription an 27.6 1.2E+02 0.0025 22.3 4.0 33 198-230 36-68 (153)
258 smart00738 NGN In Spt5p, this 27.0 1.3E+02 0.0029 20.0 4.1 22 59-80 60-81 (106)
259 PF09162 Tap-RNA_bind: Tap, RN 26.8 1.8E+02 0.0039 19.2 4.3 31 211-241 46-78 (88)
260 KOG4008 rRNA processing protei 26.7 49 0.0011 26.2 1.9 34 11-48 36-69 (261)
261 PRK05738 rplW 50S ribosomal pr 26.6 2E+02 0.0043 19.1 4.8 31 18-50 22-52 (92)
262 KOG4008 rRNA processing protei 26.6 59 0.0013 25.8 2.3 34 169-202 38-71 (261)
263 PF07530 PRE_C2HC: Associated 23.4 1.5E+02 0.0032 18.5 3.3 57 186-245 2-64 (68)
264 KOG1205 Predicted dehydrogenas 23.2 1.3E+02 0.0028 24.7 3.9 51 24-76 69-120 (282)
265 PF09707 Cas_Cas2CT1978: CRISP 22.3 2.3E+02 0.0049 18.7 4.2 46 14-66 24-72 (86)
266 PF09336 Vps4_C: Vps4 C termin 21.8 58 0.0013 19.9 1.2 23 21-44 40-62 (62)
267 KOG0156 Cytochrome P450 CYP2 s 21.6 1.8E+02 0.004 26.0 4.8 59 175-238 36-97 (489)
268 PF15407 Spo7_2_N: Sporulation 21.2 45 0.00098 20.8 0.7 18 14-31 26-43 (67)
269 KOG2295 C2H2 Zn-finger protein 21.2 20 0.00043 32.0 -1.2 67 14-84 230-299 (648)
270 KOG2187 tRNA uracil-5-methyltr 20.8 76 0.0016 28.4 2.2 67 176-243 30-98 (534)
271 PRK12378 hypothetical protein; 20.6 3.7E+02 0.0081 21.4 5.9 56 169-224 89-150 (235)
272 PF05189 RTC_insert: RNA 3'-te 20.5 2.8E+02 0.006 18.6 5.6 46 17-63 12-62 (103)
273 KOG4365 Uncharacterized conser 20.4 15 0.00032 31.8 -2.1 72 172-244 4-80 (572)
274 cd04889 ACT_PDH-BS-like C-term 20.0 1.9E+02 0.0041 16.5 4.8 40 36-75 15-55 (56)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=8.6e-33 Score=232.61 Aligned_cols=227 Identities=17% Similarity=0.278 Sum_probs=146.5
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
+.++|||+|||.++++++ |+++|+.||+|.+|++. .+|+++|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 2 ~~~~l~V~nLp~~~~e~~----l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEE----IRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 468999999999999999 77999999999998654 46889999999999999999999999999999999999
Q ss_pred EEccccchHhhh----------------------cCCCc-------------------ccchhhhhhhhh---hhhc---
Q 025982 91 QYAKTKSDIIAK----------------------ADGTF-------------------VPRERRKRHEEK---GKKR--- 123 (245)
Q Consensus 91 ~~~~~~~~~~~~----------------------~~~~~-------------------~~~~~~~~~~~~---~~~~--- 123 (245)
.++.+....... .-+.. +.-......... .+..
T Consensus 78 ~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 78 SYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred EeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 998754421100 00000 000000000000 0000
Q ss_pred c-----------chh-------hH-hh-hcCC--CCcccc----------C-----CC----------------CCCCCC
Q 025982 124 K-----------DQH-------DA-NQ-AGMG--LNPAYA----------G-----AY----------------GATPPL 150 (245)
Q Consensus 124 ~-----------~~~-------~~-~~-~~~~--~~~~~~----------~-----~~----------------~~~~~~ 150 (245)
. ... .. .. .... ...... . .. ....+.
T Consensus 158 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
T TIGR01661 158 GCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQ 237 (352)
T ss_pred CCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccc
Confidence 0 000 00 00 0000 000000 0 00 000000
Q ss_pred CCCCCCC-----CC-C----CC-CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEE
Q 025982 151 SQIPYPG-----GA-K----SV-IPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVE 214 (245)
Q Consensus 151 ~~~~~~~-----~~-~----~~-~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~ 214 (245)
...+.+. .. . .. ........+.+|||+|||..+++++|+++|++||.|.+++++.++ +|||||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~ 317 (352)
T TIGR01661 238 QHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVS 317 (352)
T ss_pred ccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEE
Confidence 0000000 00 0 00 000011233479999999999999999999999999999999864 7999999
Q ss_pred EcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 215 YGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 215 f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
|.++++|..|+..|||+.|+||+|+|+|+.
T Consensus 318 F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 318 MTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 999999999999999999999999999964
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.4e-32 Score=227.32 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=142.4
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
.....++|||+|||.++++++ |+++|+.||.|.+|++. .+++++|||||+|.+.++|.+|++.||+..+.+++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~----L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRE----LYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 455689999999999999999 77999999999988554 47889999999999999999999999999999999
Q ss_pred EEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP 167 (245)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (245)
|+|.++.+...
T Consensus 179 i~V~~a~p~~~--------------------------------------------------------------------- 189 (346)
T TIGR01659 179 LKVSYARPGGE--------------------------------------------------------------------- 189 (346)
T ss_pred eeeeccccccc---------------------------------------------------------------------
Confidence 99998753211
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCC--eEeEE
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLI 240 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~i~v 240 (245)
....++|||+|||..+++++|+++|++||.|..+++++++ +|+|||+|.+.++|..|++.||+..+.+ ++|.|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 0123569999999999999999999999999999998764 5899999999999999999999998874 79999
Q ss_pred EEecC
Q 025982 241 TYAKK 245 (245)
Q Consensus 241 ~~ak~ 245 (245)
.||+.
T Consensus 270 ~~a~~ 274 (346)
T TIGR01659 270 RLAEE 274 (346)
T ss_pred EECCc
Confidence 99863
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.8e-31 Score=203.90 Aligned_cols=176 Identities=23% Similarity=0.391 Sum_probs=149.4
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE---EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~---i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
....--|||+.|++.++-++ |++-|..||.|.+ |+++.|+++|||+||.|.+.++|+.|+..|||..+.+|.|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~----lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEK----LREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred cccceeEEehhcchhcchHH----HHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 33355699999999999999 6699999999987 5777899999999999999999999999999999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
+-.|+..+......... .. .... ....
T Consensus 135 RTNWATRKp~e~n~~~l--------tf-deV~--------------------------------------------NQss 161 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPL--------TF-DEVY--------------------------------------------NQSS 161 (321)
T ss_pred eccccccCccccCCCCc--------cH-HHHh--------------------------------------------ccCC
Confidence 99999877621110000 00 0000 0112
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
+.++++||+|++..+++++|+..|++||.|..|++++++ ||+||.|.+.|+|.+|+.++|++.++|..+++.|.|.
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-ceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 578999999999999999999999999999999999998 9999999999999999999999999999999999874
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=3.8e-31 Score=229.75 Aligned_cols=170 Identities=21% Similarity=0.332 Sum_probs=141.4
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
...++|||+|||.++++++ |+++|+.||.|.+|.+. .+++++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~----Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDT----IRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred cCCCEEEEcCCCCCCCHHH----HHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 4568999999999999999 77999999999998654 4788999999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.+......... .. +. ......
T Consensus 181 V~rp~~~p~a~~-----~~------------------------------------------------~~-----~~~~~~ 202 (612)
T TIGR01645 181 VGRPSNMPQAQP-----II------------------------------------------------DM-----VQEEAK 202 (612)
T ss_pred eccccccccccc-----cc------------------------------------------------cc-----cccccc
Confidence 975322110000 00 00 000011
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+||+..+++++|+.+|+.||.|.++++.+++ +|||||+|.+.++|..|++.|||+.++|+.|+|.+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34679999999999999999999999999999999852 7999999999999999999999999999999999874
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.8e-29 Score=219.43 Aligned_cols=219 Identities=22% Similarity=0.321 Sum_probs=148.1
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCC--ceEEEEEc
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD--KPMRIQYA 93 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g--~~i~v~~~ 93 (245)
.+|||+||+..+++++ |+++|+.||.|..|.+.++ ..+++|||+|.+.++|.+|++.|||..+.| ++|+|.|+
T Consensus 97 ~~v~v~nl~~~vt~~~----L~~~F~~~G~V~~v~i~~~-~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 97 LRVIVENPMYPITLDV----LYQIFNPYGKVLRIVTFTK-NNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred EEEEEcCCCCCCCHHH----HHHHHhccCCEEEEEEEec-CCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 4799999999999999 7799999999999876653 235799999999999999999999999975 48999999
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhh--------hccchhhHhhh----------cCCCC----ccccCCCCCCCCCC
Q 025982 94 KTKSDIIAKADGTFVPRERRKRHEEKGK--------KRKDQHDANQA----------GMGLN----PAYAGAYGATPPLS 151 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----------~~~~~----~~~~~~~~~~~~~~ 151 (245)
+.........+. +.|+...+... .......+... +.+.. .+.......+ +..
T Consensus 172 k~~~l~v~~~~~-----~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~ 245 (481)
T TIGR01649 172 KPTRLNVKYNDD-----DSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMG-PPH 245 (481)
T ss_pred cCCCceeEeccc-----CCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCC-Ccc
Confidence 875543222221 11222211110 00000000000 00000 0000000000 000
Q ss_pred CCCC------CCCC----CCCCCCCCCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHH
Q 025982 152 QIPY------PGGA----KSVIPEAPAPPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQ 220 (245)
Q Consensus 152 ~~~~------~~~~----~~~~~~~~~~~~~~l~v~nl~~-~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~ 220 (245)
..+. ...+ .........+++++|||+|||. .+++++|+++|+.||.|.+|+++++++|+|||+|.++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~ 325 (481)
T TIGR01649 246 GPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQ 325 (481)
T ss_pred cCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHH
Confidence 0000 0000 0000111235778999999997 799999999999999999999999888999999999999
Q ss_pred HHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 221 ATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 221 A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
|..|+..|||..|.|++|+|+++|+
T Consensus 326 A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 326 AQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred HHHHHHHhCCCEECCceEEEEEccc
Confidence 9999999999999999999999864
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.1e-29 Score=220.66 Aligned_cols=171 Identities=22% Similarity=0.412 Sum_probs=142.2
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
....++|||+|||..+++++ |.++|+.||.|..|.+.. +++++|||||+|.+.++|.+|+. |+|..+.|++|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~----l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i 160 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERD----LYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPI 160 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeee
Confidence 44578999999999999999 679999999999986653 67899999999999999999998 99999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.++........... .. .....
T Consensus 161 ~v~~~~~~~~~~~~~~------------------------------------~~---------------------~~~~~ 183 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAA------------------------------------TH---------------------QPGDI 183 (457)
T ss_pred EEeecchhhhhhhhcc------------------------------------cc---------------------cCCCC
Confidence 9987543221100000 00 00001
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+...+|||+|||..+++++|+.+|+.||.|.+|.++.+. +|||||+|.+.++|..|+..|||..+.|++|.|+||
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 235789999999999999999999999999999998643 689999999999999999999999999999999997
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 264 ~ 264 (457)
T TIGR01622 264 Q 264 (457)
T ss_pred c
Confidence 5
No 7
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=190.34 Aligned_cols=216 Identities=49% Similarity=0.791 Sum_probs=174.9
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
+..++.+|||+||......++|++.|+.+|++||.|..|...++.+.+|.|||.|.+.+.|..|+..|+|..|+|..++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.||..++..+.+..+.+.....+...+.......+.. .++.......... +++.. ....++
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~--------~ng~~~~~~~~~~----------p~p~~-~~~~pp 145 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLD--------TNGHFYNMNRMNL----------PPPFL-AQMAPP 145 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCccc--------ccccccccccccC----------CCCcc-ccCCCC
Confidence 9999999988877776665554443333221110000 0000000000000 00111 334578
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC-CeEeEEEEecC
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~ak~ 245 (245)
+.+||+.|||..++.+.|..+|..|...+.|++++..++.|||+|.+...|..|.+.++|+.+- ...+.|+||+|
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~K 221 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAKK 221 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccCC
Confidence 8999999999999999999999999999999999998899999999999999999999998888 99999999986
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.3e-28 Score=214.20 Aligned_cols=194 Identities=19% Similarity=0.366 Sum_probs=145.4
Q ss_pred CCCCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 13 SPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 13 ~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
+++++|||+|||. .+++++ |+++|+.||.|..|.+..+ .+|+|||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~----L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDR----LFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHH----HHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 4678999999998 699999 7799999999999988765 36999999999999999999999999999999999
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
+++......... ..... ..... .+ +.. ........+.. .......+++
T Consensus 347 ~s~~~~~~~~~~-~~~~~-~~~~~--~d--------------------~~~-----~~~~r~~~~~~---~~~~~~~~ps 394 (481)
T TIGR01649 347 PSKQQNVQPPRE-GQLDD-GLTSY--KD--------------------YSS-----SRNHRFKKPGS---ANKNNIQPPS 394 (481)
T ss_pred EcccccccCCCC-CcCcC-CCccc--cc--------------------ccC-----CccccCCCccc---ccccccCCCC
Confidence 986543211110 00000 00000 00 000 00000000000 0001123578
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCC--eeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeE------eEE
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ------LLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~--v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~------i~v 240 (245)
.+|||+|||..+++++|+++|+.||. |..+++.+.+ +++|||+|.+.++|..|+..|||+.+.++. |+|
T Consensus 395 ~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv 474 (481)
T TIGR01649 395 ATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKV 474 (481)
T ss_pred cEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEE
Confidence 89999999999999999999999998 8889988754 689999999999999999999999999885 999
Q ss_pred EEec
Q 025982 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
+|||
T Consensus 475 ~fs~ 478 (481)
T TIGR01649 475 SFST 478 (481)
T ss_pred Eecc
Confidence 9997
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.9e-28 Score=212.62 Aligned_cols=222 Identities=19% Similarity=0.272 Sum_probs=142.1
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccC-CceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-DKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~-g~~i 88 (245)
....++|||+|||.++++++ |.++|+.||.|.+|++. .+|+++|||||+|.+.++|.+|++.||+..+. |+.|
T Consensus 55 p~~~~~lFVgnLp~~~tEd~----L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDE----LVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHH----HHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 44578999999999999999 77999999999998654 47889999999999999999999999998886 7777
Q ss_pred EEEEccccchHhh-------------hcCCCccc-chhhh-hhhh-hhhhc--------cchhhHhhhcCCCCccccCCC
Q 025982 89 RIQYAKTKSDIIA-------------KADGTFVP-RERRK-RHEE-KGKKR--------KDQHDANQAGMGLNPAYAGAY 144 (245)
Q Consensus 89 ~v~~~~~~~~~~~-------------~~~~~~~~-~~~~~-~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 144 (245)
.|..+........ ..-..+.. ..... .... ....+ ........+...+.......+
T Consensus 131 ~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~ 210 (578)
T TIGR01648 131 GVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 210 (578)
T ss_pred cccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEec
Confidence 7766532211000 00000000 00000 0000 00000 000000000000000000001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccC--CCeeEEEEecCCCeEEEEEEcCHHHHH
Q 025982 145 GATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQF--PGFKEVRMVEAKPGIAFVEYGDEMQAT 222 (245)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~--G~v~~v~~~~~~~g~afV~f~~~~~A~ 222 (245)
+........... ............+|||+||+..+++++|+++|+.| |.|.+|.++ ++||||+|.+.++|.
T Consensus 211 Gr~I~VdwA~p~----~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~ 283 (578)
T TIGR01648 211 GHVIAVDWAEPE----EEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAV 283 (578)
T ss_pred CceEEEEeeccc----ccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHH
Confidence 111100000000 00001111245689999999999999999999999 999999876 369999999999999
Q ss_pred HHHHHhCCCeeCCeEeEEEEec
Q 025982 223 VAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 223 ~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+|++.|||..|.|++|.|+||+
T Consensus 284 kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 284 KAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred HHHHHhCCCEECCEEEEEEEcc
Confidence 9999999999999999999996
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.8e-28 Score=217.93 Aligned_cols=179 Identities=22% Similarity=0.362 Sum_probs=145.4
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccC----C
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY----D 85 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~----g 85 (245)
....++|||+|||.++++++ |+++|+.||.|.++.+. .++.++|||||.|.+.++|.+|++.+|+..+. |
T Consensus 175 ~~~~~~l~V~nl~~~~tee~----L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g 250 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDK----LRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEG 250 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHH----HHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccc
Confidence 34567899999999999999 77999999999987654 46778999999999999999999999999999 9
Q ss_pred ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 86 KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE 165 (245)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
+.+.|.++..+..+...... ...... . ..
T Consensus 251 ~~l~v~~a~~k~er~~~~~~--------~~~~~~--------~-----------------------------------~~ 279 (562)
T TIGR01628 251 KKLYVGRAQKRAEREAELRR--------KFEELQ--------Q-----------------------------------ER 279 (562)
T ss_pred eeeEeecccChhhhHHHHHh--------hHHhhh--------h-----------------------------------hh
Confidence 99999887665442110000 000000 0 00
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 166 ~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
.....+.+|||+||+..+++++|+++|+.||.|.+++++.+. +|+|||+|.+.++|.+|+..|||..++|++|.|.
T Consensus 280 ~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~ 359 (562)
T TIGR01628 280 KMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVA 359 (562)
T ss_pred hcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEE
Confidence 001245679999999999999999999999999999998753 6899999999999999999999999999999999
Q ss_pred EecC
Q 025982 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
||++
T Consensus 360 ~a~~ 363 (562)
T TIGR01628 360 LAQR 363 (562)
T ss_pred eccC
Confidence 9874
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3.6e-28 Score=215.98 Aligned_cols=157 Identities=23% Similarity=0.406 Sum_probs=137.4
Q ss_pred eEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
.|||+|||+++||++ |+++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.+|+..+.|+.|+|.|+
T Consensus 2 sl~VgnLp~~vte~~----L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAK----LYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 699999999999999 779999999999986654 5778999999999999999999999999999999999986
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcE
Q 025982 94 KTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNI 173 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
....... .....+
T Consensus 78 ~~~~~~~-------------------------------------------------------------------~~~~~~ 90 (562)
T TIGR01628 78 QRDPSLR-------------------------------------------------------------------RSGVGN 90 (562)
T ss_pred ccccccc-------------------------------------------------------------------ccCCCc
Confidence 4321100 012345
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 174 l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
|||+|||..+++++|+++|+.||.|.+|++..+. +|||||+|.+.++|..|++.+||..+.|+.|.|...+
T Consensus 91 vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 91 IFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred eEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 9999999999999999999999999999998753 6899999999999999999999999999999997643
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.7e-28 Score=196.31 Aligned_cols=222 Identities=19% Similarity=0.293 Sum_probs=151.1
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCcc
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~ 83 (245)
.+.+..+..+.|||+.||.++.|++ |.-+|+..|.|-+++++. +|.+||||||.|.+.+.|++|++.||+..|
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~Ede----LvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDE----LVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchh----hHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 3455567799999999999999999 779999999999987665 689999999999999999999999999988
Q ss_pred C-CceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhc--------------cch-------------hhHhhhcCC
Q 025982 84 Y-DKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR--------------KDQ-------------HDANQAGMG 135 (245)
Q Consensus 84 ~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-------------~~~~~~~~~ 135 (245)
. |+.|.|..+...-..+. +..-..+.+..-......- +.. .....+..-
T Consensus 151 r~GK~igvc~Svan~RLFi---G~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 151 RPGKLLGVCVSVANCRLFI---GNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred cCCCEeEEEEeeecceeEe---ccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 7 88998887643211000 0000000000000000000 000 000000000
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEE
Q 025982 136 LNPAYAGAYGATPPLSQIPYPGGAKSVIPEA--PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFV 213 (245)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV 213 (245)
+-+.....|+ ..+.-+++.+..... ....-.+|||+||+..+|+|.|..+|+.||.|.+|+.++ .||||
T Consensus 228 l~~g~~klwg------n~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r---DYaFV 298 (506)
T KOG0117|consen 228 LMPGKIKLWG------NAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR---DYAFV 298 (506)
T ss_pred ccCCceeecC------CcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc---ceeEE
Confidence 1111111222 222222222211110 112235799999999999999999999999999998874 59999
Q ss_pred EEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 214 ~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.|.+.++|.+|++.+||+.+.|..|-|.+||
T Consensus 299 Hf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 299 HFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred eecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 9999999999999999999999999999998
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=181.29 Aligned_cols=226 Identities=21% Similarity=0.333 Sum_probs=152.6
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEe---CCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILA---FKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~---~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
....+.|.|.-||..+|+|| |+.+|+..|.|++|.+ .-+|.+.||+||.|.++++|.+|+..|||..+..++|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE----~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDE----LRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred CcccceeeeeecccccCHHH----HHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 34467899999999999999 7799999999999744 4478899999999999999999999999999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhc-----------------------------cchhhHhhhcCCCCcc
Q 025982 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR-----------------------------KDQHDANQAGMGLNPA 139 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 139 (245)
+|.|+++.+..+...+. |++.-.+.....+...- ++......+..+++..
T Consensus 114 KVSyARPSs~~Ik~aNL-YvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 114 KVSYARPSSDSIKDANL-YVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred EEEeccCChhhhcccce-EEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 99999988775443222 22211111000000000 0000000000000000
Q ss_pred -----------------------------ccCCC-CCCCCCCC--------------------CCCCC-----CCCCCCC
Q 025982 140 -----------------------------YAGAY-GATPPLSQ--------------------IPYPG-----GAKSVIP 164 (245)
Q Consensus 140 -----------------------------~~~~~-~~~~~~~~--------------------~~~~~-----~~~~~~~ 164 (245)
+.... +...|..+ +|... -+....+
T Consensus 193 ~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp 272 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLP 272 (360)
T ss_pred CCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccC
Confidence 00000 00000000 00000 0000111
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeE
Q 025982 165 EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 165 ~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 239 (245)
.. ...+-+|||.||...+.|.-||++|++||.|..|+++++- ||||||.|.+.++|.+|+..|||..+++|.|.
T Consensus 273 ~~-~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 273 GG-PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CC-CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 11 1124479999999999999999999999999999999863 79999999999999999999999999999999
Q ss_pred EEEe
Q 025982 240 ITYA 243 (245)
Q Consensus 240 v~~a 243 (245)
|+|-
T Consensus 352 VsFK 355 (360)
T KOG0145|consen 352 VSFK 355 (360)
T ss_pred EEEe
Confidence 9983
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=3.3e-27 Score=207.81 Aligned_cols=190 Identities=16% Similarity=0.239 Sum_probs=134.6
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccC--------CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCc
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFG--------TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--------~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~ 82 (245)
.....++|||+|||+.+++++|+++|.++|...| .|..+.. +..+|||||+|.+.++|..|+. |||..
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 3456789999999999999996655555444333 3444444 3458999999999999999996 99999
Q ss_pred cCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 025982 83 FYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSV 162 (245)
Q Consensus 83 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
|.|+.|+|........... .... .. ...+... . .......
T Consensus 247 ~~g~~l~v~r~~~~~~~~~-~~~~-------------~~----------------~~~~~~~---~-------~~~~~~~ 286 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQ-ITPE-------------VS----------------QKNPDDN---A-------KNVEKLV 286 (509)
T ss_pred eeCceeEecCccccCCccc-cCCC-------------CC----------------CCCCccc---c-------ccccccc
Confidence 9999999865432110000 0000 00 0000000 0 0000000
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 163 IPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 163 ~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
..........+|||+|||..+++++|+++|+.||.|..+.++.+ .+|||||+|.+.++|..|+..|||..|+|++
T Consensus 287 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 287 NSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 00111124567999999999999999999999999999999875 2799999999999999999999999999999
Q ss_pred eEEEEec
Q 025982 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|.|.+|.
T Consensus 367 l~v~~a~ 373 (509)
T TIGR01642 367 LHVQRAC 373 (509)
T ss_pred EEEEECc
Confidence 9999984
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.2e-28 Score=195.28 Aligned_cols=161 Identities=19% Similarity=0.380 Sum_probs=138.5
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEe---CCCCCceeEEEEEecCHHHHHHHHHHHcCC-ccCC-
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILA---FKTLKHKGQAWLVFKDVASATAAVEKMQGF-PFYD- 85 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~---~~~~~~kg~afV~F~~~e~A~~a~~~l~~~-~~~g- 85 (245)
.....-++||+-+|..++|.| |+++|++||.|.+|.+ ..++.++|||||.|.+.++|.+|+.+||.. .+-|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~d----lr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKD----LRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCchhhhheeccCCccccHHH----HHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 345677899999999999999 6799999999999844 447889999999999999999999999874 4443
Q ss_pred -ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 86 -KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP 164 (245)
Q Consensus 86 -~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (245)
.+|.|.|+....+++
T Consensus 106 ~~pvqvk~Ad~E~er~---------------------------------------------------------------- 121 (510)
T KOG0144|consen 106 HHPVQVKYADGERERI---------------------------------------------------------------- 121 (510)
T ss_pred Ccceeecccchhhhcc----------------------------------------------------------------
Confidence 499999987654432
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCC-eeC--CeE
Q 025982 165 EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSL-KIG--QQQ 237 (245)
Q Consensus 165 ~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~-~~~--g~~ 237 (245)
+....|||+-|+..++|.+++.+|++||.|.++.|.++. +|||||.|.+.+.|..|++.|||. .+. ..+
T Consensus 122 ----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 122 ----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred ----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCc
Confidence 134569999999999999999999999999999999964 899999999999999999999994 344 678
Q ss_pred eEEEEe
Q 025982 238 LLITYA 243 (245)
Q Consensus 238 i~v~~a 243 (245)
|.|.||
T Consensus 198 LVVkFA 203 (510)
T KOG0144|consen 198 LVVKFA 203 (510)
T ss_pred eEEEec
Confidence 999998
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=173.21 Aligned_cols=160 Identities=24% Similarity=0.396 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
...+|||+||+..++++- |+++|-+.|+|..|++.+ +...+|||||+|.++|+|+.|++.||+..++|++|+|
T Consensus 8 qd~tiyvgnld~kvs~~~----l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEEL----LYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred CCceEEEecCCHHHHHHH----HHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 357999999999999998 899999999999997765 4557899999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.-+...... ...
T Consensus 84 ~kas~~~~n--------------------------------------------------------------------l~v 95 (203)
T KOG0131|consen 84 NKASAHQKN--------------------------------------------------------------------LDV 95 (203)
T ss_pred Eeccccccc--------------------------------------------------------------------ccc
Confidence 876421110 013
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeE-EEEecC-----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKE-VRMVEA-----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~-v~~~~~-----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+..|||+||++.+.+..|.+.|+.||.+.. -+++++ ++|+|||.|++.+.+.+|+.++||..++.++|.|+||+
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 466999999999999999999999998744 334442 37899999999999999999999999999999999998
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
|
T Consensus 176 k 176 (203)
T KOG0131|consen 176 K 176 (203)
T ss_pred e
Confidence 6
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=7.4e-26 Score=196.72 Aligned_cols=226 Identities=18% Similarity=0.290 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
+..++|||+|||..+++++ |.++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 184 p~~~~l~v~nl~~~~te~~----l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQE----LRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred CCCCEEEEcCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEE
Confidence 3478999999999999999 67999999999988655 3568899999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhh-hccchhhHhhhcCC------CCccc--------cCCCCCCCCCCC-C
Q 025982 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKDQHDANQAGMG------LNPAY--------AGAYGATPPLSQ-I 153 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~--------~~~~~~~~~~~~-~ 153 (245)
|.|+......... ...+.............. .............. .+... ....+....... .
T Consensus 260 v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (457)
T TIGR01622 260 VGYAQDSTYLLDA-ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSR 338 (457)
T ss_pred EEEccCCCccccc-hhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccc
Confidence 9998643221110 000000000000000000 00000000000000 00000 000000000000 0
Q ss_pred CC----CC-CCCCCCCC-CCCCCCcEEEEeCCCCCCC----------HHHHHHHhccCCCeeEEEEe-cCCCeEEEEEEc
Q 025982 154 PY----PG-GAKSVIPE-APAPPNNILFVQNVPHDTT----------PMALQMFFSQFPGFKEVRMV-EAKPGIAFVEYG 216 (245)
Q Consensus 154 ~~----~~-~~~~~~~~-~~~~~~~~l~v~nl~~~~~----------~~~L~~~f~~~G~v~~v~~~-~~~~g~afV~f~ 216 (245)
+. .. ......+. ....++.+|+|.||....+ .+||+..|++||.|..|.+. +...|++||+|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~ 418 (457)
T TIGR01622 339 YATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFS 418 (457)
T ss_pred ccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEEC
Confidence 00 00 00011111 1234677899999954433 36899999999999999988 445799999999
Q ss_pred CHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 217 DEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 217 ~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++++|..|++.|||..|+|+.|.+.|.
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEE
Confidence 999999999999999999999999986
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=6.6e-26 Score=199.59 Aligned_cols=186 Identities=19% Similarity=0.268 Sum_probs=138.3
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
...++|||+|||..+++++ |.++|+.||.|..+.+. .+|.++|||||+|.+.++|..|+..|||..+.|+.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQ----IKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3468999999999999999 77999999999887543 4788999999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.++............. ... +.... ..............
T Consensus 369 v~~a~~~~~~~~~~~~~-----------------------~~~------~~~~~------------~~~~~~~~~~~~~~ 407 (509)
T TIGR01642 369 VQRACVGANQATIDTSN-----------------------GMA------PVTLL------------AKALSQSILQIGGK 407 (509)
T ss_pred EEECccCCCCCCccccc-----------------------ccc------ccccc------------cccchhhhccccCC
Confidence 99986432110000000 000 00000 00000000011123
Q ss_pred CCcEEEEeCCCCC--C--------CHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEEcCHHHHHHHHHHhCCC
Q 025982 170 PNNILFVQNVPHD--T--------TPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSL 231 (245)
Q Consensus 170 ~~~~l~v~nl~~~--~--------~~~~L~~~f~~~G~v~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~ 231 (245)
++.+|+|.||... + ..++|+++|++||.|.+|.|++.. .|++||+|.++++|..|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 6788999999632 1 236899999999999999998631 489999999999999999999999
Q ss_pred eeCCeEeEEEEe
Q 025982 232 KIGQQQLLITYA 243 (245)
Q Consensus 232 ~~~g~~i~v~~a 243 (245)
.|+|+.|.|.|.
T Consensus 488 ~~~gr~v~~~~~ 499 (509)
T TIGR01642 488 KFNDRVVVAAFY 499 (509)
T ss_pred EECCeEEEEEEe
Confidence 999999999985
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.5e-26 Score=190.91 Aligned_cols=181 Identities=19% Similarity=0.290 Sum_probs=142.8
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.+|||++||++++.++ |.++|+.+|+|..+.+.. ++.++||+||.|.-.|+++.|+..+++..|.|+.|.|..
T Consensus 6 ~TlfV~~lp~~~~~~q----L~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQ----LEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDP 81 (678)
T ss_pred ceEEEecCCCccchhH----HHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccc
Confidence 7999999999999999 789999999999875443 446899999999999999999999999999999999999
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025982 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+..+........+.- .. .+.... + ..+ .....+.+.-
T Consensus 82 A~~R~r~e~~~~~e~-----~~-veK~~~------q----------------------------~~~---~k~~v~~~k~ 118 (678)
T KOG0127|consen 82 AKKRARSEEVEKGEN-----KA-VEKPIE------Q----------------------------KRP---TKAKVDLPKW 118 (678)
T ss_pred ccccccchhcccccc-----hh-hhcccc------c----------------------------CCc---chhhccCccc
Confidence 877554221000000 00 000000 0 000 0011112345
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.|+|+|||.++...+|..+|+.||.|..|.|++.+ .|||||.|.+..+|..|++.+||..|.||+|-|.||
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 69999999999999999999999999999998643 699999999999999999999999999999999998
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=181.09 Aligned_cols=226 Identities=23% Similarity=0.314 Sum_probs=144.6
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
+.-+|.|+|||..+.+.+ |..+|+.||.|.+|.+++ +|+..|||||+|....+|..|++.+|+..|.||+|.|.
T Consensus 116 ~k~rLIIRNLPf~~k~~d----Lk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPD----LKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred ccceEEeecCCcccCcHH----HHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 367899999999999999 669999999999998775 66777999999999999999999999999999999999
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhh-hccchh-----hHhhhcCCCCccccCCC-----CCCCCC---------C
Q 025982 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGK-KRKDQH-----DANQAGMGLNPAYAGAY-----GATPPL---------S 151 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~---------~ 151 (245)
||.++..........-.+.++....+.+.. ..+.-. ....-..+-.....+.. +..... +
T Consensus 192 WAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S 271 (678)
T KOG0127|consen 192 WAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESS 271 (678)
T ss_pred eecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccc
Confidence 997654321110000000000000000000 000000 00000000000000000 000000 0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHH
Q 025982 152 QIPYPGGAKSVIP-EAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAM 225 (245)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al 225 (245)
....+........ ......+.++||+|||+.+++++|.++|++||.|.+..++.++ +|.|||.|.++.+|+.++
T Consensus 272 ~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 272 GKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred ccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHH
Confidence 0000000001110 1111234789999999999999999999999999998888754 799999999999999999
Q ss_pred HHh-----CC-CeeCCeEeEEEEe
Q 025982 226 QSL-----QS-LKIGQQQLLITYA 243 (245)
Q Consensus 226 ~~l-----~g-~~~~g~~i~v~~a 243 (245)
... .| ..+.||-|+|..|
T Consensus 352 ~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 352 EAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred HhcCccCCCceEEEeccEEeeeec
Confidence 876 23 6688999999876
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=4e-25 Score=170.88 Aligned_cols=145 Identities=21% Similarity=0.403 Sum_probs=134.0
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
-+|||+|||..+++.+ |+.+|++||.|++|-+. |+||||..++...|..|+..||+..++|-.|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~e----lr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQE----LRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHH----HHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 3699999999999999 66999999999999765 57999999999999999999999999999999998766
Q ss_pred cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEE
Q 025982 96 KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175 (245)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (245)
++. .+++|+
T Consensus 74 Ksk-----------------------------------------------------------------------~stkl~ 82 (346)
T KOG0109|consen 74 KSK-----------------------------------------------------------------------ASTKLH 82 (346)
T ss_pred cCC-----------------------------------------------------------------------Cccccc
Confidence 422 456799
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 176 v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
|+|+.+.++.++|+..|.+||.|+.+.+++ +|+||.|...++|..|++-|+++.|.|++++|+++
T Consensus 83 vgNis~tctn~ElRa~fe~ygpviecdivk---dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 83 VGNISPTCTNQELRAKFEKYGPVIECDIVK---DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred cCCCCccccCHHHhhhhcccCCceeeeeec---ceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 999999999999999999999999999985 69999999999999999999999999999999986
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=5.7e-24 Score=181.95 Aligned_cols=164 Identities=24% Similarity=0.407 Sum_probs=137.5
Q ss_pred eEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CC----CceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TL----KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~----~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
+|||+||+++++.++ |..+|..+|.|..|.+.. ++ .+.|||||+|.+.++|+.|++.|+|..+.|+.|.|
T Consensus 517 ~lfvkNlnf~Tt~e~----l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLED----LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred hhhhhcCCcccchhH----HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 399999999999999 779999999999985443 22 24599999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++........... .+ ....
T Consensus 593 k~S~~k~~~~~gK~----------------------------------------------------------~~--~kk~ 612 (725)
T KOG0110|consen 593 KISENKPASTVGKK----------------------------------------------------------KS--KKKK 612 (725)
T ss_pred EeccCccccccccc----------------------------------------------------------cc--cccc
Confidence 99862222111000 00 0012
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC--C---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA--K---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~--~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+.|+|+|+|+..+..+++.+|..||.|.+|++... + +|+|||+|-++.+|.+|+.+|.+++++||+|.++||+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 467999999999999999999999999999999874 1 6899999999999999999999999999999999997
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.2e-22 Score=164.79 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcC-CccCCc--e
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQG-FPFYDK--P 87 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~-~~~~g~--~ 87 (245)
...++|||+.|+..++|.| ++++|++||.|++|.+.+ ++.+||||||.|++.|.|..|++.||| ..+.|. +
T Consensus 122 ~~e~KLFvg~lsK~~te~e----vr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENE----VREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred ccchhhhhhhccccccHHH----HHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCc
Confidence 3478999999999999999 779999999999987665 788999999999999999999999999 455555 9
Q ss_pred EEEEEccccchH
Q 025982 88 MRIQYAKTKSDI 99 (245)
Q Consensus 88 i~v~~~~~~~~~ 99 (245)
|.|.|++.++.+
T Consensus 198 LVVkFADtqkdk 209 (510)
T KOG0144|consen 198 LVVKFADTQKDK 209 (510)
T ss_pred eEEEecccCCCc
Confidence 999999877653
No 24
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.3e-22 Score=152.53 Aligned_cols=228 Identities=20% Similarity=0.364 Sum_probs=150.5
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCc-cCC--ce
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFP-FYD--KP 87 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~-~~g--~~ 87 (245)
..+++|||+.|...-+||| ++.+|..||.|.+|.+.+ +|.+||+|||.|.+.-+|..|+..|||.. +-| ..
T Consensus 17 ~~drklfvgml~kqq~e~d----vrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDD----VRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred ccchhhhhhhhcccccHHH----HHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 3579999999999999999 779999999999987665 88999999999999999999999999944 444 48
Q ss_pred EEEEEccccchHhhhc-------CCCcccch-----hhhhhhhhhhhc--------c-------------chhhHhhhcC
Q 025982 88 MRIQYAKTKSDIIAKA-------DGTFVPRE-----RRKRHEEKGKKR--------K-------------DQHDANQAGM 134 (245)
Q Consensus 88 i~v~~~~~~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~--------~-------------~~~~~~~~~~ 134 (245)
|.|.|++..+++..++ -+-+.+.. ...+...-.+.+ . .++......+
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 9999998877653321 11121100 000000000000 0 0000000000
Q ss_pred CC---C--c-----------------------------cccCCCCCCCC-----CCCCCCCCCC----------------
Q 025982 135 GL---N--P-----------------------------AYAGAYGATPP-----LSQIPYPGGA---------------- 159 (245)
Q Consensus 135 ~~---~--~-----------------------------~~~~~~~~~~~-----~~~~~~~~~~---------------- 159 (245)
+. + + ..+...|.+.+ -...+++...
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence 00 0 0 00000000000 0000000000
Q ss_pred ---------CCC---C---------CCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEE
Q 025982 160 ---------KSV---I---------PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFV 213 (245)
Q Consensus 160 ---------~~~---~---------~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV 213 (245)
.+. . -..+.|.++.|||..||....+.+|..+|-+||.|.+.+++.|+ |=|+||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 000 0 01234578899999999999999999999999999999988765 569999
Q ss_pred EEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 214 EYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 214 ~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.|.|+.+|+.|+..|||+.|+-|+|+|++-|
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 9999999999999999999999999998743
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4e-22 Score=166.07 Aligned_cols=147 Identities=22% Similarity=0.410 Sum_probs=131.0
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
..|||+ +++|+.. |++.|+.+|+|.+|++.++-.+-|||||.|.+.++|.+|+..||...+.|++|+|.|+..
T Consensus 2 ~sl~vg---~~v~e~~----l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAM----LFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHH----HHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 358999 9999999 889999999999975444223899999999999999999999999999999999999633
Q ss_pred cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEE
Q 025982 96 KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175 (245)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (245)
. + ..+|
T Consensus 75 d-------------------------------------------------------------------------~-~~~~ 80 (369)
T KOG0123|consen 75 D-------------------------------------------------------------------------P-SLVF 80 (369)
T ss_pred C-------------------------------------------------------------------------C-ceee
Confidence 1 1 1199
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 176 v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
|.||+..++..+|.++|+.||+|.+|++..+. +|| ||.|+++++|..|+..+||.-+.|++|.|..+.
T Consensus 81 i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 81 IKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 99999999999999999999999999999864 789 999999999999999999999999999997754
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=5.6e-21 Score=166.63 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||+|||+++++++ |.++|+.||.|..+++.+ +++++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 203 ~~~rLfVgnLp~~vteed----Lk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV 278 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETD----IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 278 (612)
T ss_pred ccceEEeecCCCCCCHHH----HHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 457999999999999999 779999999999986554 5779999999999999999999999999999999999
Q ss_pred EEccccc
Q 025982 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
.++...+
T Consensus 279 ~kAi~pP 285 (612)
T TIGR01645 279 GKCVTPP 285 (612)
T ss_pred EecCCCc
Confidence 9987644
No 27
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.88 E-value=2.1e-21 Score=156.65 Aligned_cols=216 Identities=25% Similarity=0.321 Sum_probs=153.3
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC-C-ceEEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-D-KPMRIQY 92 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~-g-~~i~v~~ 92 (245)
--+++|.|+-+.++.|. |+++|++||.|..|..... ...-.|+|+|.+.+.|..|...|+|..++ | ++|+|.|
T Consensus 150 vLr~iie~m~ypVslDV----LHqvFS~fG~VlKIiTF~K-nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDV----LHQVFSKFGFVLKIITFTK-NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eEEEEeccceeeeEHHH----HHHHHhhcceeEEEEEEec-ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 34678999999999999 8899999999999865432 22347999999999999999999998887 3 4999999
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhc--cchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q 025982 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKR--KDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP- 169 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (245)
++....... |.+.+.|++.++..... .+..+..+++..- ..+...|.+...+.......... +....+
T Consensus 225 Sklt~LnvK-----ynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~--~~~~~~g~p~aip~~~~~a~~a~--~~~~~~~ 295 (492)
T KOG1190|consen 225 SKLTDLNVK-----YNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFG--SVPAVHGAPLAIPSGAAGANAAD--GKIESPS 295 (492)
T ss_pred hhcccceee-----ccccccccccCCCCCCCccccccchhhhcccc--ccccccCCcccCCccchhhcccc--cccccCC
Confidence 876444222 55556677766665432 1111222221111 11111111111110111111111 111111
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVP-HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~-~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+.+|.|.||. ..+|.+.|..+|+.||+|.+|++..+++..|+|.|.+...|+.|+.+|+|.+++|++|+|.++|
T Consensus 296 ~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 296 ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 26889999995 8999999999999999999999999988899999999999999999999999999999999987
No 28
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.4e-21 Score=138.94 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=132.3
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
..+++|||+|||.++-+.+ |+++|.+||.|..|.+........||||+|++..+|..|+...+|..+.|..|+|++
T Consensus 4 r~~~~iyvGNLP~diReke----ieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKE----IEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhcc----HHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4568999999999999999 779999999999997655444567999999999999999999999999999999999
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025982 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+..-.. .....+.+....+-. ++. . .......-....
T Consensus 80 prggr~-s~~~~G~y~gggrgG-----------------------------gg~--------g-----g~rgppsrrSe~ 116 (241)
T KOG0105|consen 80 PRGGRS-SSDRRGSYSGGGRGG-----------------------------GGG--------G-----GRRGPPSRRSEY 116 (241)
T ss_pred ccCCCc-ccccccccCCCCCCC-----------------------------CCC--------C-----cccCCcccccce
Confidence 865432 111111111110000 000 0 000000112346
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
.+.|.+||.+-+|+||+++...-|.|....+.++ |++.|+|...++...|+.+|....+.
T Consensus 117 RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehhhHHHHHHhhcccccc
Confidence 7999999999999999999999999998888887 58999999999999999999886654
No 29
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.6e-21 Score=155.38 Aligned_cols=165 Identities=22% Similarity=0.367 Sum_probs=136.5
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
++|||+.+++...||. |+.-|..||+|.+| |+.-+++.||||||+|+-+|.|..|++.|||..+.||.|+|..
T Consensus 114 cRvYVGSIsfEl~EDt----iR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDT----IRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHH----HHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 6899999999999999 67999999999998 5666899999999999999999999999999999999999974
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025982 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
... +...... -+.. +. ....-.
T Consensus 190 PsN----mpQAQpi------ID~v----------qe--------------------------------------eAk~fn 211 (544)
T KOG0124|consen 190 PSN----MPQAQPI------IDMV----------QE--------------------------------------EAKKFN 211 (544)
T ss_pred CCC----CcccchH------HHHH----------HH--------------------------------------HHHhhh
Confidence 321 0000000 0000 00 001235
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
+|||..+-..++++||+.+|..||.|.+|.+.++. +||+|++|.+..+...|+..||=+-++|.-|+|..
T Consensus 212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 69999999999999999999999999999999864 79999999999999999999998999999888754
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=2.4e-21 Score=161.83 Aligned_cols=220 Identities=18% Similarity=0.204 Sum_probs=143.0
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.|-.+|||+||.+..++++ |...|+.||.|..|... .+|.++||+||+|.+.++|.+|++.|||+.+-|+.|+
T Consensus 276 ~p~~rl~vgnLHfNite~~----lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDM----LRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred cchhhhhhcccccCchHHH----HhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEE
Confidence 3444599999999999999 77999999999988443 3899999999999999999999999999999999999
Q ss_pred EEEccccchHhhh------c---CCCcccchh--hhhhhhhhhh-ccc-----hhhHhhhcCCCCccccCCCCCCCCCCC
Q 025982 90 IQYAKTKSDIIAK------A---DGTFVPRER--RKRHEEKGKK-RKD-----QHDANQAGMGLNPAYAGAYGATPPLSQ 152 (245)
Q Consensus 90 v~~~~~~~~~~~~------~---~~~~~~~~~--~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (245)
|.....+...... . +....+... +.....+..+ ..- +............+.....+... ...
T Consensus 352 V~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 430 (549)
T KOG0147|consen 352 VSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRV-RSV 430 (549)
T ss_pred EEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCc-ccc
Confidence 9886543221100 0 111111110 0000000000 000 00000000000111111111110 000
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEeCCC--CCCC--------HHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHH
Q 025982 153 IPYPGGAKSVIPEAPAPPNNILFVQNVP--HDTT--------PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQAT 222 (245)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~--~~~~--------~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~ 222 (245)
.+..+ .....+++.++.++|+= ...| .+|+.+-+++||.|..|.+.++..|+.||.|.+.+.|.
T Consensus 431 --~p~~~----~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~ 504 (549)
T KOG0147|consen 431 --DPADA----SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAG 504 (549)
T ss_pred --Ccccc----ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHH
Confidence 00000 11122577789999993 2222 36788999999999999999988899999999999999
Q ss_pred HHHHHhCCCeeCCeEeEEEEe
Q 025982 223 VAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 223 ~Al~~l~g~~~~g~~i~v~~a 243 (245)
.|+..|||.||.||.|.+.|-
T Consensus 505 ~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 505 TAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHhhhhhccceeEEEEe
Confidence 999999999999999999984
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-20 Score=156.89 Aligned_cols=161 Identities=25% Similarity=0.405 Sum_probs=138.5
Q ss_pred EEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025982 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
|||.||+++++.++ |+++|+.||.|++|.+.. +| ++|| ||+|.+.+.|.+|++.+||..+.|+.|.|.....
T Consensus 79 ~~i~nl~~~~~~~~----~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKS----LYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHH----HHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 99999999999999 889999999999996554 45 8999 9999999999999999999999999999988776
Q ss_pred cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEE
Q 025982 96 KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175 (245)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (245)
+..+...... ....-+.++
T Consensus 153 ~~er~~~~~~-------------------------------------------------------------~~~~~t~v~ 171 (369)
T KOG0123|consen 153 KEEREAPLGE-------------------------------------------------------------YKKRFTNVY 171 (369)
T ss_pred hhhhcccccc-------------------------------------------------------------hhhhhhhhh
Confidence 5553221000 001223489
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 176 v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
+.|++..++++.|.++|+.||.|.++.++++. ++|+||.|.++++|..|++.||+..+.++.+.|..|.+
T Consensus 172 vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 172 VKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred eeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 99999999999999999999999999999853 78999999999999999999999999999999988754
No 32
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.84 E-value=6e-19 Score=141.13 Aligned_cols=224 Identities=22% Similarity=0.323 Sum_probs=155.2
Q ss_pred CCCCCCCeEEEcCCC--cccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC-C-
Q 025982 10 NEISPNNTIYINNLN--EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-D- 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp--~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~-g- 85 (245)
+...++..|.++=|. +..|-|. |+.+....|.|+.|.+.+. +-=.|.|+|++.+.|++|...|||-+|+ |
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDV----ly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDV----LYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhh----hhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccc
Confidence 335667778777665 4567777 8899999999999866642 1238999999999999999999999987 4
Q ss_pred ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhc--------cchhhHhhhcCCC---Cc---cccC--CCCCCCC
Q 025982 86 KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKR--------KDQHDANQAGMGL---NP---AYAG--AYGATPP 149 (245)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~---~~~~--~~~~~~~ 149 (245)
.+|+|+|+++...+..+.+...++ ++.+..... +...++......+ .. .+.. ..+.+.+
T Consensus 189 CTLKIeyAkP~rlnV~knd~DtwD-----yTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~ 263 (494)
T KOG1456|consen 189 CTLKIEYAKPTRLNVQKNDKDTWD-----YTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHP 263 (494)
T ss_pred eeEEEEecCcceeeeeecCCcccc-----ccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCC
Confidence 499999999988765555544332 222222111 1111111111100 00 0111 0111111
Q ss_pred CCCCCCCCCC---CCCCCCCCCCCCcEEEEeCCC-CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHH
Q 025982 150 LSQIPYPGGA---KSVIPEAPAPPNNILFVQNVP-HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM 225 (245)
Q Consensus 150 ~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nl~-~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al 225 (245)
+ +..+.... ....+.....+++++.|.+|+ ..++.+-|.++|..||+|.+|++++.+.|.|+|++.|..+.++|+
T Consensus 264 ~-P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v 342 (494)
T KOG1456|consen 264 P-PSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAV 342 (494)
T ss_pred C-CCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHH
Confidence 1 11111111 011122455678999999998 788999999999999999999999999999999999999999999
Q ss_pred HHhCCCeeCCeEeEEEEecC
Q 025982 226 QSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 226 ~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+||+..+.|.+|.|+++||
T Consensus 343 ~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 343 THLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred HHhccCccccceEEEeeccc
Confidence 99999999999999999986
No 33
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.83 E-value=4e-19 Score=132.98 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=131.1
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCC----ceeEEEEEecCHHHHHHHHHHHcCCccC---Cc
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK----HKGQAWLVFKDVASATAAVEKMQGFPFY---DK 86 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~----~kg~afV~F~~~e~A~~a~~~l~~~~~~---g~ 86 (245)
+-++|||.|||.++..-| |+.+|..|-..+...+.-+++ ++.+||+.|.+..+|..|+..|||+.|. +.
T Consensus 33 ~VRTLFVSGLP~DvKpRE----iynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPRE----IYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccceeeeccCCcccCHHH----HHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 368999999999999999 889999886666655444433 4579999999999999999999999997 78
Q ss_pred eEEEEEccccchHhhhcCCC------cccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCC----------
Q 025982 87 PMRIQYAKTKSDIIAKADGT------FVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPL---------- 150 (245)
Q Consensus 87 ~i~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 150 (245)
+|+|++++..........+. ......+....++. ....+..... ++.+.+.......++.
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~s--a~~qhd~~l~--~p~~l~~~~~a~al~~~~~t~~~~l~ 184 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKS--ADDQHDEGLS--DPDELQEPGNADALKENDTTKSEALS 184 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhccc--chhhcccccc--CccccCCccccccCCCccccchhhhh
Confidence 99999998755432221111 00000000000000 0000110000 0000000000000000
Q ss_pred ---CCCCCCCC--CCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-CCeEEEEEEcCHHHHHHH
Q 025982 151 ---SQIPYPGG--AKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-KPGIAFVEYGDEMQATVA 224 (245)
Q Consensus 151 ---~~~~~~~~--~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-~~g~afV~f~~~~~A~~A 224 (245)
...|.... -.+...........+|||-||...++|++|+.+|+.|-.....++... .--.||++|.+.+.|..|
T Consensus 185 a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 185 APDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDA 264 (284)
T ss_pred hhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHH
Confidence 00110000 000011112233457999999999999999999999987766666432 224899999999999999
Q ss_pred HHHhCCCeeC
Q 025982 225 MQSLQSLKIG 234 (245)
Q Consensus 225 l~~l~g~~~~ 234 (245)
+.+|+|..+-
T Consensus 265 m~~lqg~~~s 274 (284)
T KOG1457|consen 265 MNHLQGNLLS 274 (284)
T ss_pred HHHhhcceec
Confidence 9999998765
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=4.8e-18 Score=145.94 Aligned_cols=208 Identities=21% Similarity=0.263 Sum_probs=139.7
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
.....+.++|+|||..+..++ |...|..||.|..|.+++.|. .++|+|.+..+|.+|+..|....+...++.+
T Consensus 381 ~~rs~~vil~kNlpa~t~~~e----lt~~F~~fG~i~rvllp~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEE----LTEAFLRFGEIGRVLLPPGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred hhhhcceeeeccCccccccHH----HHHHhhcccccceeecCcccc---eeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 345568999999999999999 779999999999997765442 5999999999999999999999888889999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
+|+.............+............. + .-....+...... .+.............. .
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~---E--------------r~s~~d~~v~eD~-d~te~ss~a~~a~~~~-~ 514 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPS---E--------------RVSAEDGQVEEDK-DPTEESSLARVAEDEE-T 514 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcc---e--------------ecccccccccccC-Cccccccchhhhhccc-c
Confidence 887543221000000000000000000000 0 0000000000000 0000000000111111 1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
.++||++||+..++.++|..+|+.+|.|.++.|...+ .|||||+|.++++|+.|++.|+|+.+.|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 2239999999999999999999999999998887632 39999999999999999999999999999999999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 75
No 35
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=2.5e-17 Score=130.75 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=136.6
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE--------E--EeCCCCCceeEEEEEecCHHHHHHHHHHHcCC
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------I--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i--~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~ 81 (245)
..-++.|||+|||.++|-++ +.++|+.+|.|.. | .....|+.||=|+|.|-..+++..|+..|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE----~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDE----FAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHH----HHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcc
Confidence 33467799999999999999 7799999998865 3 33346889999999999999999999999999
Q ss_pred ccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 025982 82 PFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS 161 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.|.|+.|+|+.|+-+... .+...++......... +-..++... -+ ..|..
T Consensus 207 ~~rg~~~rVerAkfq~Kg------e~~~~~k~k~k~~~~k-k~~k~q~k~--~d----------------w~pd~----- 256 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQMKG------EYDASKKEKGKCKDKK-KLKKQQQKL--LD----------------WRPDR----- 256 (382)
T ss_pred cccCcEEEEehhhhhhcc------CcCcccccccccccHH-HHHHHHHhh--cc----------------cCCCc-----
Confidence 999999999998654331 1111111100000000 000000000 00 00000
Q ss_pred CCCCCCCCCCcEEEEeCCC----CCCC-------HHHHHHHhccCCCeeEEEEec-CCCeEEEEEEcCHHHHHHHHHHhC
Q 025982 162 VIPEAPAPPNNILFVQNVP----HDTT-------PMALQMFFSQFPGFKEVRMVE-AKPGIAFVEYGDEMQATVAMQSLQ 229 (245)
Q Consensus 162 ~~~~~~~~~~~~l~v~nl~----~~~~-------~~~L~~~f~~~G~v~~v~~~~-~~~g~afV~f~~~~~A~~Al~~l~ 229 (245)
.........++++++|+= ...+ +++|..-+++||.|.+|.++. .+.|.+-|.|.|.++|..+++.|+
T Consensus 257 -~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 257 -DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred -cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhc
Confidence 001111345789999984 2233 456778899999999998874 346999999999999999999999
Q ss_pred CCeeCCeEeEEEE
Q 025982 230 SLKIGQQQLLITY 242 (245)
Q Consensus 230 g~~~~g~~i~v~~ 242 (245)
|+.|+||.|..+.
T Consensus 336 GR~fdgRql~A~i 348 (382)
T KOG1548|consen 336 GRWFDGRQLTASI 348 (382)
T ss_pred CeeecceEEEEEE
Confidence 9999999998764
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=5.2e-19 Score=148.01 Aligned_cols=169 Identities=18% Similarity=0.333 Sum_probs=136.1
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEE---eCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL---AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~---~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++||+--|+...++-+ |+++|+.+|.|..|+ +..++.++|.|||+|-+.+....|+. |.|..+.|-+|.|.
T Consensus 179 ~Rtvf~~qla~r~~pRd----L~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRD----LEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchh----HHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 57888888888899999 889999999998864 44577899999999999999999997 99999999999997
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
.+............. .. ......|-
T Consensus 254 ~sEaeknr~a~~s~a------------------------------------~~-------------------~k~~~~p~ 278 (549)
T KOG0147|consen 254 LSEAEKNRAANASPA------------------------------------LQ-------------------GKGFTGPM 278 (549)
T ss_pred ccHHHHHHHHhcccc------------------------------------cc-------------------ccccccch
Confidence 754332211000000 00 00001122
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
..|||+||-.++++++|+.+|.+||.|..|.++.+. +||||++|.+.++|..|+++|||+.+.|+.|+|+..
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 239999999999999999999999999999999863 799999999999999999999999999999999753
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.5e-18 Score=133.40 Aligned_cols=74 Identities=18% Similarity=0.370 Sum_probs=69.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.-+||+.|...++-++|++.|.+||+|.+.++++|. |||+||.|-+.++|..|++.|||.+|++|.|+--||-|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 349999999999999999999999999999999963 89999999999999999999999999999999999854
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.75 E-value=4.3e-17 Score=131.94 Aligned_cols=188 Identities=21% Similarity=0.344 Sum_probs=142.4
Q ss_pred CCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 15 NNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 15 ~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
+..|-|.||-. .+|.+. |..+|+.||.|..|.+..+++ -.|+|++.+...|..|++.|+|..++|++|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~----LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDV----LFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhH----HHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 68899999875 568888 889999999999997776543 58999999999999999999999999999999999
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC
Q 025982 94 KTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGA--KSVIPEAPAPPN 171 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 171 (245)
+...-....+.. +.+...+.. ...+.+.-+ .+-......||+
T Consensus 371 KH~~vqlp~egq-----~d~glT~dy-------------------------------~~spLhrfkkpgsKN~~ni~Pps 414 (492)
T KOG1190|consen 371 KHTNVQLPREGQ-----EDQGLTKDY-------------------------------GNSPLHRFKKPGSKNYQNIFPPS 414 (492)
T ss_pred cCccccCCCCCC-----ccccccccC-------------------------------CCCchhhccCcccccccccCCch
Confidence 876543322111 011111100 001111111 111223455788
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC-CeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v-~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~ak 244 (245)
.+|.+.|+|.++++|+|+..|..-|.. +-.++....+.+|++.+.++|+|.-|+..+|.+.++ +.-|+|+|+|
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 999999999999999999999988864 666666644459999999999999999999999999 6699999987
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=5.2e-17 Score=129.86 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
....++|||..+.++.+++| |...|+.||+|..|.+-+ .+..|||+||+|.+..+-..|+..||-+++.|..|
T Consensus 207 Ak~fnRiYVaSvHpDLSe~D----iKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETD----IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred HHhhheEEeeecCCCccHHH----HHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 34468999999999999999 559999999999996554 45688999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|..+....
T Consensus 283 RVGk~vTPP 291 (544)
T KOG0124|consen 283 RVGKCVTPP 291 (544)
T ss_pred ecccccCCC
Confidence 998765433
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.74 E-value=7.5e-18 Score=136.05 Aligned_cols=162 Identities=18% Similarity=0.314 Sum_probs=133.9
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||++|+.+++++. |++.|++||.|.++.+++ +++++||+||.|.+.+...+++. .....+.|+.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~----Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEES----LREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHH----HHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 568999999999999999 669999999999975554 78899999999999999999988 5567788999988
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
..+.+...... ......
T Consensus 80 k~av~r~~~~~---------------------------------------------------------------~~~~~~ 96 (311)
T KOG4205|consen 80 KRAVSREDQTK---------------------------------------------------------------VGRHLR 96 (311)
T ss_pred eeccCcccccc---------------------------------------------------------------cccccc
Confidence 77765433110 000013
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...+||++||..++++++++.|.+||.|..+.++.+. +|++||.|.+++...+++. ..-+.|.|+++.|..|-
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 5679999999999999999999999999888887753 7999999999999888886 57788999999998763
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=4.8e-17 Score=118.80 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+++++|+++|++||.|.++.++.++ +|||||+|.+.++|..|++.||+..|.|++|+|++|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 45679999999999999999999999999999998753 6999999999999999999999999999999999986
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=6.9e-18 Score=128.36 Aligned_cols=166 Identities=21% Similarity=0.299 Sum_probs=129.4
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
..|||++||..+.+.+ |+.+|..||.+..+.+. .||+||+|.+..+|..|+..+|+..|.|-.+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d----~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERD----VERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhH----HHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4699999999999999 77999999999888654 37999999999999999999999999998899999865
Q ss_pred cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEE
Q 025982 96 KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILF 175 (245)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (245)
..... +.-....+... ...........+.++
T Consensus 73 ~~~~~----g~~~~g~r~~~---------------------------------------------~~~~~~p~~s~~r~~ 103 (216)
T KOG0106|consen 73 KRRGR----GRPRGGDRRSD---------------------------------------------SRRYRPPSRTHFRLI 103 (216)
T ss_pred ccccc----CCCCCCCccch---------------------------------------------hhccCCcccccceee
Confidence 32211 00000000000 000001113567899
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 176 v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
|.|+...+.+.+|.++|+++|.+.+... ..+++||+|.+.++|..|+..|+|..+.++.|.+..
T Consensus 104 ~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 104 VRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred eccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 9999999999999999999999844433 457999999999999999999999999999998743
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=5.9e-17 Score=118.33 Aligned_cols=82 Identities=22% Similarity=0.400 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
...+++|||+|||.++++++ |+++|+.||.|..|.+. .+++++|||||+|.+.++|..|++.||+..+.|+.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDAS----LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHH----HHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44578999999999999999 77999999999987543 478899999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++..+.
T Consensus 107 ~V~~a~~~~ 115 (144)
T PLN03134 107 RVNPANDRP 115 (144)
T ss_pred EEEeCCcCC
Confidence 999986543
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.66 E-value=7.1e-15 Score=121.99 Aligned_cols=165 Identities=13% Similarity=0.170 Sum_probs=123.7
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
.+....|.+++||-++|++| |.++|+.+ .|..+.+.+ +|+..|-|||+|.+.|++.+|++ .+...+..|.|.|
T Consensus 7 ~~~~~~vr~rGLPwsat~~e----i~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKE----ILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHH----HHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEE
Confidence 33456799999999999999 77999998 577765554 69999999999999999999999 7888899999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
-.+........ .+. ........
T Consensus 81 f~~~~~e~d~~---------------~~~-------------------------------------------~g~~s~~~ 102 (510)
T KOG4211|consen 81 FTAGGAEADWV---------------MRP-------------------------------------------GGPNSSAN 102 (510)
T ss_pred EccCCcccccc---------------ccC-------------------------------------------CCCCCCCC
Confidence 66544322100 000 00000024
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeE-EEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKE-VRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~-v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
..+|-+++||..||++||.+||+..-.|.. |.+..+. +|-|||.|++.+.|+.||.. |...|+-|=|.|-
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 567999999999999999999997754443 4444432 78999999999999999984 6677776666553
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=7.2e-16 Score=98.92 Aligned_cols=66 Identities=35% Similarity=0.584 Sum_probs=62.6
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeE
Q 025982 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 174 l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 239 (245)
|||+|||..+++++|+++|+.||.|..+.+..+ .+++|||+|.+.++|..|++.|||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999984 268999999999999999999999999999986
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=8.3e-16 Score=98.65 Aligned_cols=68 Identities=31% Similarity=0.536 Sum_probs=62.6
Q ss_pred EEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
|||+|||.++++++ |+++|+.||.|..+.+.. ++..+++|||+|.+.++|.+|++.+||..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~----l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEE----LRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHH----HHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHH----HHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999 779999999998876554 578899999999999999999999999999999885
No 47
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.64 E-value=1.2e-15 Score=128.42 Aligned_cols=80 Identities=18% Similarity=0.406 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
.+.+|||+|||+++++++ |+++|+.||.|.++++. .++.++|||||+|.+.++|..|+..|||..|.|+.|+|
T Consensus 268 ~~~~lfV~NL~~~~~e~~----L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETV----LWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345799999999999999 77999999999997544 37899999999999999999999999999999999999
Q ss_pred EEccccc
Q 025982 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
.|...+.
T Consensus 344 ~~~~~~~ 350 (352)
T TIGR01661 344 SFKTNKA 350 (352)
T ss_pred EEccCCC
Confidence 9987653
No 48
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=1.8e-15 Score=99.95 Aligned_cols=82 Identities=24% Similarity=0.472 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.+.++-|||+|||++.|.++ ++++|..||.|..|++-.+...+|.|||.|++..+|.+|+.+|+|..+.++.+.|.
T Consensus 15 pevnriLyirNLp~~ITsee----mydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEE----MYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHH----HHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 45589999999999999999 88999999999999999888899999999999999999999999999999999999
Q ss_pred Eccccc
Q 025982 92 YAKTKS 97 (245)
Q Consensus 92 ~~~~~~ 97 (245)
+..+..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 976643
No 49
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=8.2e-16 Score=111.19 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..+.|||+||+..+++.||..+|+.||.+..|.+...+.|||||+|+++.+|..|+..|+|..|.|..|.|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 367899999999999999999999999999999999989999999999999999999999999999999999864
No 50
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.1e-15 Score=110.54 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
...++|||+||+..+++.| |+..|..||+|..||+.. ...|||||+|++..+|..|+..|+|..|.|..|+|++
T Consensus 8 ~~~~kVYVGnL~~~a~k~e----LE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRE----LERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCCCCcchHH----HHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 3478999999999999999 779999999999998876 3579999999999999999999999999999999999
Q ss_pred ccccch
Q 025982 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.....
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 876544
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=3.6e-15 Score=130.30 Aligned_cols=137 Identities=14% Similarity=0.184 Sum_probs=99.0
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhccc--CCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQF--GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~--G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
...++|||+|||.++++++ |+++|+.| |.|..|... ++||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 231 ~~~k~LfVgNL~~~~tee~----L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEI----IEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred ccccEEEEeCCCCCCCHHH----HHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4468899999999999999 77999999 999998654 579999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.|+++........-..- ...++...... .........+.
T Consensus 302 ~~Akp~~~~~~~~~~rg-~gg~~~~~~~~----------------------------------------~~~~g~~~sp~ 340 (578)
T TIGR01648 302 TLAKPVDKKSYVRYTRG-TGGRGKERQAA----------------------------------------RQSLGQVYDPA 340 (578)
T ss_pred EEccCCCcccccccccc-cCCCccccccc----------------------------------------ccccCcccCcc
Confidence 99977533111000000 00000000000 00001122345
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCee
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFK 199 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~ 199 (245)
+.+++++|++...+++.+.++|..+|.|.
T Consensus 341 s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 341 SRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred ccccccccccccccccchhhccccCcccc
Confidence 67899999999999999999999988764
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=3.1e-15 Score=124.30 Aligned_cols=78 Identities=24% Similarity=0.470 Sum_probs=72.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
.....++|||+|||..+++++|+++|+.||.|.+|+|+.+. +|||||+|.++++|..|++.|||..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33467899999999999999999999999999999998763 5899999999999999999999999999999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
||+
T Consensus 183 ~a~ 185 (346)
T TIGR01659 183 YAR 185 (346)
T ss_pred ccc
Confidence 986
No 53
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=6.5e-15 Score=115.12 Aligned_cols=73 Identities=29% Similarity=0.307 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++|||+|||..+++++|+++|+.||.|.+|.|+.++ +|||||+|.++++|..|+. |||..|.|++|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 4679999999999999999999999999999999874 6899999999999999995 99999999999999875
No 54
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=6e-15 Score=115.30 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=70.9
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
.++|||+|||+.+++++ |+++|+.||.|..|.+..++..+|||||+|.+.++|..|+. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~d----LrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERD----IKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999 77999999999999888877778999999999999999997 99999999999999976
Q ss_pred c
Q 025982 95 T 95 (245)
Q Consensus 95 ~ 95 (245)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 4
No 55
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=7.4e-15 Score=124.52 Aligned_cols=179 Identities=20% Similarity=0.315 Sum_probs=130.1
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE---EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~---i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
...++|++||...++++++ ++.+.||.+.. |.+..+|.++||||.+|.+.-....|+..|||..+.+..+.|.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~----Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVK----ELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cchhhhccCcCccCHHHHH----HHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 5689999999999999955 55555565544 5666678999999999999999999999999999999999998
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
.+............. ......+.+ ........+++
T Consensus 365 ~A~~g~~~~~~~~~~--------------------------------~~~~~~~i~-------------~~~~q~~g~~t 399 (500)
T KOG0120|consen 365 RAIVGASNANVNFNI--------------------------------SQSQVPGIP-------------LLMTQMAGIPT 399 (500)
T ss_pred hhhccchhccccCCc--------------------------------cccccccch-------------hhhcccCCCcc
Confidence 875543311100000 000000000 00011223466
Q ss_pred cEEEEeCCC--CCC-CH-------HHHHHHhccCCCeeEEEEecC--------CCeEEEEEEcCHHHHHHHHHHhCCCee
Q 025982 172 NILFVQNVP--HDT-TP-------MALQMFFSQFPGFKEVRMVEA--------KPGIAFVEYGDEMQATVAMQSLQSLKI 233 (245)
Q Consensus 172 ~~l~v~nl~--~~~-~~-------~~L~~~f~~~G~v~~v~~~~~--------~~g~afV~f~~~~~A~~Al~~l~g~~~ 233 (245)
.+|.+.|+= ... .+ |+++.-+++||.|..|.+.+. ..|..||+|++.+++++|++.|+|+.|
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 677777762 222 22 467788899999999998875 168999999999999999999999999
Q ss_pred CCeEeEEEE
Q 025982 234 GQQQLLITY 242 (245)
Q Consensus 234 ~g~~i~v~~ 242 (245)
.||++..+|
T Consensus 480 ~nRtVvtsY 488 (500)
T KOG0120|consen 480 ANRTVVASY 488 (500)
T ss_pred CCcEEEEEe
Confidence 999999987
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.58 E-value=1.7e-14 Score=88.35 Aligned_cols=56 Identities=30% Similarity=0.546 Sum_probs=52.4
Q ss_pred HHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 188 LQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 188 L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
|.++|++||.|..+.+.+.++++|||+|.+.++|..|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998877689999999999999999999999999999999997
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=1.8e-14 Score=92.52 Aligned_cols=66 Identities=35% Similarity=0.604 Sum_probs=60.7
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeE
Q 025982 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 174 l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 239 (245)
|+|+|||..+++++|+++|+.||.|..+.+..++ +++|||+|.++++|..|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7899999999999999999999999999999874 69999999999999999999999999999985
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.58 E-value=2.6e-13 Score=111.25 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
..++|||+|||...||+.|++-|..||.|.+..++-..+..+.|.|.++++|.+|+..|+|..+.|+.|+|.|+
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 45689999999999999999999999999998886544456799999999999999999999999999999984
No 59
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=6.6e-15 Score=101.05 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
.+++|||+||+..++||+|.++|+++|.|+.|.+=-++ .|||||+|.+.++|..|++.++|+.+..++|.|.|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 57899999999999999999999999999988766543 69999999999999999999999999999999987
No 60
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.4e-14 Score=110.19 Aligned_cols=78 Identities=26% Similarity=0.511 Sum_probs=72.2
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++|.|+|||.+++|++ |+++|..||+|..| ++..||.+||||||.|.+-++|.+|+..|||.-+..-.|+|+
T Consensus 189 ~~tvRvtNLsed~~E~d----L~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDD----LEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cceeEEecCccccChhH----HHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 56799999999999999 77999999999887 456699999999999999999999999999999999999999
Q ss_pred Ecccc
Q 025982 92 YAKTK 96 (245)
Q Consensus 92 ~~~~~ 96 (245)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 61
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=2.2e-14 Score=113.36 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=68.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC---CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA---KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~---~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++|+|+|+|+..-+-||+.+|.+||.|.+|.|+.+ +||||||+|+++++|.+|-++|||+.+.||+|.|-.|
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 57999999999999999999999999999999974 4899999999999999999999999999999999876
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.3e-14 Score=99.60 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEe---CCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILA---FKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~---~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
...+++|||+||++.++|++ |+++|+..|.|..|.+ ..+.+..|||||+|-+.++|..|++.+++..+..++|
T Consensus 33 ~r~S~tvyVgNlSfyttEEq----iyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQ----IYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HhhcceEEEeeeeeeecHHH----HHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 45689999999999999999 8999999999998753 3355677999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.|-....
T Consensus 109 r~D~D~GF~ 117 (153)
T KOG0121|consen 109 RIDWDAGFV 117 (153)
T ss_pred eeeccccch
Confidence 998865443
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=3.8e-14 Score=90.95 Aligned_cols=68 Identities=25% Similarity=0.456 Sum_probs=59.2
Q ss_pred EEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
|||+|||+.+++++ |.++|+.||.|..|.+.. ++..+|+|||+|.+.++|..|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~----l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEED----LRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHH----HHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHH----HHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999 779999999999886554 367899999999999999999998888999999874
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=5.3e-13 Score=109.40 Aligned_cols=218 Identities=17% Similarity=0.265 Sum_probs=136.2
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcc-cCCeEEE--EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQ-FGTILEI--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~-~G~v~~i--~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
....+.+||+|||+++.=.+|+ ++|.. .|.|..| ....+|+.+|+|.|+|+++|.+++|++.||...+.||+|
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLK----dLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l 116 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLK----DLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGREL 116 (608)
T ss_pred ccccceEEEecCcchhhhHhHH----HHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceE
Confidence 3445679999999999999944 77754 5888877 455689999999999999999999999999999999999
Q ss_pred EEEEccccchHhh---hcCCC--cccch-------------------hhhhhhhhhhhccchhhHhhhcCC-CCccccCC
Q 025982 89 RIQYAKTKSDIIA---KADGT--FVPRE-------------------RRKRHEEKGKKRKDQHDANQAGMG-LNPAYAGA 143 (245)
Q Consensus 89 ~v~~~~~~~~~~~---~~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 143 (245)
.|.--...+.... -.++. |.... .+....++................ .+....+.
T Consensus 117 ~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~l 196 (608)
T KOG4212|consen 117 VVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNL 196 (608)
T ss_pred EEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhc
Confidence 9976443221100 00000 10000 000000000000000000000000 00000111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHH
Q 025982 144 YGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEM 219 (245)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~ 219 (245)
.+..+.+..+. .. -..|....+||.||+..+....|.+.|.-.|.|.+|.+--++ +|+|.++|.++-
T Consensus 197 fgl~~~Flr~~------h~---f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpv 267 (608)
T KOG4212|consen 197 FGLSASFLRSL------HI---FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPV 267 (608)
T ss_pred ccchhhhhhhc------cC---CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchH
Confidence 11111111000 00 112344569999999999999999999999999988887654 789999999999
Q ss_pred HHHHHHHHhCCCeeCCeEeEEEE
Q 025982 220 QATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 220 ~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
+|..|+..+++.-++.++..+.+
T Consensus 268 eavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 268 EAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHHHHHhhccCCCccccceeec
Confidence 99999999988666676665543
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=91.48 Aligned_cols=73 Identities=27% Similarity=0.537 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
.+..|||+|||.++|.++.-++|++||.|..|++-..+ +|-|||.|++..+|.+|+++|+|..+.++-|.|-|
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 46789999999999999999999999999999886543 79999999999999999999999999999999876
No 66
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.53 E-value=3.1e-13 Score=108.70 Aligned_cols=169 Identities=20% Similarity=0.216 Sum_probs=129.8
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHc--CCccC
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ--GFPFY 84 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~--~~~~~ 84 (245)
.+.-+..++-.|+|++|-..++|.| |.+-.+.||+|..+..+.- +..|.|+|++++.|+.++...- ...+.
T Consensus 23 ~dphk~~~spvvhvr~l~~~v~ead----l~eal~~fG~i~yvt~~P~---~r~alvefedi~~akn~Vnfaa~n~i~i~ 95 (494)
T KOG1456|consen 23 ADPHKPNPSPVVHVRGLHQGVVEAD----LVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGAKNCVNFAADNQIYIA 95 (494)
T ss_pred CCCCCCCCCceEEEeccccccchhH----HHHHHhcCCceEEEEeccc---cceeeeeeccccchhhheehhccCccccc
Confidence 3445577899999999999999999 6677899999988876543 4689999999999999987332 23334
Q ss_pred CceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 85 DKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIP 164 (245)
Q Consensus 85 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (245)
|+.-.+.|+..+.-... .
T Consensus 96 gq~Al~NyStsq~i~R~--------------------------------------------------------------g 113 (494)
T KOG1456|consen 96 GQQALFNYSTSQCIERP--------------------------------------------------------------G 113 (494)
T ss_pred CchhhcccchhhhhccC--------------------------------------------------------------C
Confidence 55555555433221000 0
Q ss_pred CCCCCCCcEEEEeCCC--CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC--CeEeEE
Q 025982 165 EAPAPPNNILFVQNVP--HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLI 240 (245)
Q Consensus 165 ~~~~~~~~~l~v~nl~--~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v 240 (245)
.....++.+|.+.=|. ..+|-+-|..++-+.|.|.+|.+++..-=.|.|+|++.+.|++|..+|||.-|+ -.+|+|
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 1122467777776553 788999999999999999999998865338999999999999999999999888 678999
Q ss_pred EEec
Q 025982 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
+|||
T Consensus 194 eyAk 197 (494)
T KOG1456|consen 194 EYAK 197 (494)
T ss_pred EecC
Confidence 9998
No 67
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=7.4e-14 Score=107.52 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
.+.+|||+||++.+++++ |+++|+.||.|..|.+.+++..+++|||+|.+.++|..|+. |+|..|.+++|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~d----LrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKD----VYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHH----HHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 457999999999999999 77999999999999999888888999999999999999997 9999999999999886
Q ss_pred cc
Q 025982 94 KT 95 (245)
Q Consensus 94 ~~ 95 (245)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 68
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=1.6e-13 Score=111.26 Aligned_cols=142 Identities=23% Similarity=0.328 Sum_probs=104.6
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++|||+|||.++++++ |+++|..||.|..|.+. .++.++|+|||+|.+.++|..|+..+++..|.|++|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~----l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEED----LRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHH----HHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 59999999999999999 77999999999776544 368999999999999999999999999999999999999
Q ss_pred Eccc-cchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 92 YAKT-KSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 92 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
++.. ......... . ...... ... ..........
T Consensus 191 ~~~~~~~~~~~~~~---~-------~~~~~~--------------------~~~----------------~~~~~~~~~~ 224 (306)
T COG0724 191 KAQPASQPRSELSN---N-------LDASFA--------------------KKL----------------SRGKALLLEK 224 (306)
T ss_pred cccccccccccccc---c-------cchhhh--------------------ccc----------------cccccccccc
Confidence 9754 000000000 0 000000 000 0001112235
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA 206 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~ 206 (245)
+..+++.|++..++..++...|..+|.+....+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 225 SDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 667999999999999999999999999976666654
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=99.51 E-value=1.6e-13 Score=87.81 Aligned_cols=69 Identities=35% Similarity=0.580 Sum_probs=64.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
+|+|+|||..+++++|+++|+.||.|.++.+..++ +|+|||+|.+.++|..|+..++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988765 6899999999999999999999999999999874
No 70
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=2e-13 Score=105.14 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=67.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+.+|+|+||+..+|+++|+++|+.||.|.+|.|+++. +++|||+|.++++|..|+. |+|..|.+++|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 45789999999999999999999999999999999865 5799999999999999994 9999999999999764
No 71
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=1.1e-13 Score=115.05 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-CeEEEEEEcCH--HHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-PGIAFVEYGDE--MQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-~g~afV~f~~~--~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+.+|||+||+..++++||..+|+.||.|.+|.|++.. +|||||+|.+. .++.+|+..|||..+.|+.|+|.-||
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 45789999999999999999999999999999999743 79999999987 78999999999999999999999987
No 72
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.48 E-value=1.2e-13 Score=104.36 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHH----HhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 170 PNNILFVQNVPHDTTPMALQM----FFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~----~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++.+|||.||++.+..++|+. +|+.||.|..|...... +|.|||.|.+.+.|..|+.+|+|+.|.||.++|+||
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 445899999999999999887 99999999999888654 799999999999999999999999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
|.
T Consensus 88 ~s 89 (221)
T KOG4206|consen 88 KS 89 (221)
T ss_pred cC
Confidence 84
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.4e-13 Score=108.92 Aligned_cols=79 Identities=18% Similarity=0.366 Sum_probs=70.2
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC-CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF-KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~-~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
-++|+|+|||+..-+-| |+.+|++||.|++|.+. ...-+|||+||.|++.++|++|-++|||..+.||+|.|..+
T Consensus 96 pkRLhVSNIPFrFRdpD----L~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPD----LRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCcc----HHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 47999999999999999 77999999999987433 33348999999999999999999999999999999999998
Q ss_pred cccc
Q 025982 94 KTKS 97 (245)
Q Consensus 94 ~~~~ 97 (245)
..+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 7653
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.8e-13 Score=113.84 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-CCCceeEEEEEecCH--HHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDV--ASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~--e~A~~a~~~l~~~~~~g~~i 88 (245)
.....+|||+||++.+++++ |..+|..||.|..|.+.+ +| ||||||+|.+. .++.+|+..|||..|.|+.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDD----LravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDD----LLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CCcceEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 34468999999999999999 779999999999986554 55 99999999987 78999999999999999999
Q ss_pred EEEEcccc
Q 025982 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|..|++.
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99999764
No 75
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.7e-13 Score=103.30 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|-|.||+..+++.+|+++|.+||.|.++.|.+++ +|||||.|.+.++|++|+..|||.-+..-.|+|.|||
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45679999999999999999999999999999999975 7999999999999999999999999999999999997
No 76
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=8.9e-13 Score=101.36 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=70.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..+.|+|.-||..+|+++++.+|+..|+|.++++++++ -||+||.|.++++|.+|+..|||.++-.|+|+|+||+
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 44569999999999999999999999999999999986 4799999999999999999999999999999999997
No 77
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=4.9e-13 Score=81.77 Aligned_cols=56 Identities=34% Similarity=0.683 Sum_probs=50.6
Q ss_pred HHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 36 LHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 36 l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
|+++|++||.|..|...++. +++|||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 56899999999999887664 689999999999999999999999999999999985
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=6.2e-13 Score=85.07 Aligned_cols=70 Identities=30% Similarity=0.528 Sum_probs=63.0
Q ss_pred eEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCC-CCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT-LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
+|||+|||..++.++ |+++|..||.|..+....+ +.++|+|||+|.+.++|..|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~----l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEED----LKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHH----HHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 589999999999999 6699999999999866653 567899999999999999999999999999998876
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.3e-13 Score=102.38 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=69.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..|.|-||...++.++|..+|.+||.|-+|.|..++ +|||||.|.+..+|+.|+++|+|..+.|+.|.|++||
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 459999999999999999999999999999999865 7999999999999999999999999999999999986
No 80
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=1.4e-12 Score=83.86 Aligned_cols=70 Identities=39% Similarity=0.647 Sum_probs=65.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
+|+|+|||..+++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|..|+..+++..+.|++|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 38999999999999999999999999999998864 68999999999999999999999999999999875
No 81
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.8e-14 Score=104.93 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
-+.-|||+|||++.||.| |.-+|++||.|..| ++..||+++||||+.|+++.+-..|+..|||..+.||+|+|
T Consensus 34 dsA~Iyiggl~~~LtEgD----il~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGD----ILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred cceEEEECCCcccccCCc----EEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 467899999999999999 66999999999886 55669999999999999999999999999999999999999
Q ss_pred EEcc
Q 025982 91 QYAK 94 (245)
Q Consensus 91 ~~~~ 94 (245)
....
T Consensus 110 DHv~ 113 (219)
T KOG0126|consen 110 DHVS 113 (219)
T ss_pred eecc
Confidence 8854
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.3e-14 Score=104.34 Aligned_cols=73 Identities=21% Similarity=0.427 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
.+..|||+|||..+|+.||..+|++||.|.+|.|++++ +||||+.|.+..+...|+..|||..|.||.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 56789999999999999999999999999999999975 79999999999999999999999999999999975
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=4.8e-13 Score=92.78 Aligned_cols=77 Identities=19% Similarity=0.385 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEE---eCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL---AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~---~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
++=.|||+|+...+++++ |.+.|..||.|..|+ +.++|-.||||+|+|.+.++|++|+..+||..+.|..|.|
T Consensus 71 EGwIi~VtgvHeEatEed----i~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEED----IHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred eeEEEEEeccCcchhHHH----HHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 356799999999999999 779999999999985 4468999999999999999999999999999999999999
Q ss_pred EEcc
Q 025982 91 QYAK 94 (245)
Q Consensus 91 ~~~~ 94 (245)
.|+-
T Consensus 147 Dw~F 150 (170)
T KOG0130|consen 147 DWCF 150 (170)
T ss_pred EEEE
Confidence 9974
No 84
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=5.7e-13 Score=112.51 Aligned_cols=79 Identities=24% Similarity=0.478 Sum_probs=72.9
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
+.|||+|+|+++++++ |.++|+..|.|.++ .+..+|+.+||||++|.+.++|..|++.|||..+.||+|+|.|
T Consensus 19 ~~v~vgnip~~~se~~----l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQ----LLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHH----HHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 8999999999999999 77999999999986 4556899999999999999999999999999999999999999
Q ss_pred ccccch
Q 025982 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.....
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 876544
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.8e-12 Score=101.46 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
..-|-+||||+-|+.+++|+. |...|+.||+|..|++. .+|+++|||||+|++..+...|++..+|..|.|+.
T Consensus 97 ~gDPy~TLFv~RLnydT~Esk----LrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESK----LRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred cCCccceeeeeeccccccHHH----HHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 346789999999999999999 67999999999987544 58999999999999999999999999999999999
Q ss_pred EEEEEc
Q 025982 88 MRIQYA 93 (245)
Q Consensus 88 i~v~~~ 93 (245)
|.|.+-
T Consensus 173 i~VDvE 178 (335)
T KOG0113|consen 173 ILVDVE 178 (335)
T ss_pred EEEEec
Confidence 999874
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=2.2e-12 Score=82.19 Aligned_cols=66 Identities=35% Similarity=0.564 Sum_probs=61.0
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 176 VQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 176 v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
|+|||..+++++|+.+|+.||.|..+.+..++ +|+|||+|.+.++|..|+..+++..+.|++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999988764 5899999999999999999999999999999874
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=4e-12 Score=99.55 Aligned_cols=75 Identities=29% Similarity=0.507 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.|-+||||.-|+..++|..|+..|+.||.|+.|.|+.++ +|||||+|.++-+..+|..+.+|..|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 466889999999999999999999999999999999873 799999999999999999999999999999999874
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.3e-12 Score=90.75 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+-.|||.++-...++++|.+.|..||.|+++.|--++ +|||+|+|.+..+|+.|+..+||..+-|.+|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45579999999999999999999999999999988765 799999999999999999999999999999999996
No 89
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.1e-12 Score=99.67 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE---EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~---i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
.-++|||+||+-.+..++ |+++|++||.|++ |.+..+|++|||+||.|.+.++|.+|.+.-| =.|+||+-.|
T Consensus 11 ~~TKifVggL~w~T~~~~----l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNc 85 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKET----LRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANC 85 (247)
T ss_pred eEEEEEEcCcccccchHH----HHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccccccccc
Confidence 347999999999999999 7799999999988 3566699999999999999999999998433 4578999888
Q ss_pred EEccc
Q 025982 91 QYAKT 95 (245)
Q Consensus 91 ~~~~~ 95 (245)
.++.-
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 88753
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=3e-12 Score=108.88 Aligned_cols=183 Identities=22% Similarity=0.380 Sum_probs=129.7
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhccc-----------C-CeEEEEeCCCCCceeEEEEEecCHHHHHHH
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-----------G-TILEILAFKTLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-----------G-~v~~i~~~~~~~~kg~afV~F~~~e~A~~a 74 (245)
+.+.-+...++++|+++|+.++++.+ ..+|..- | .+..+.+. ..+++||++|.+.+.|..|
T Consensus 167 ~~~~~t~q~~r~~v~~~~~~~~e~~~----~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~ 239 (500)
T KOG0120|consen 167 MDSQATRQARRLYVGNIPFTSNEESM----MSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEA 239 (500)
T ss_pred cCcchhhhhhhhcccccCCccCcHhh----hhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhh
Confidence 33444666899999999999999994 4555442 1 24444443 4578999999999999999
Q ss_pred HHHHcCCccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCC
Q 025982 75 VEKMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIP 154 (245)
Q Consensus 75 ~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (245)
+. +++..+.|..+++.-....... .+....+.. .
T Consensus 240 ~~-~~~~~f~g~~~~~~r~~d~~~~--------------------------------------------p~~~~~~~~-~ 273 (500)
T KOG0120|consen 240 MA-LDGIIFEGRPLKIRRPHDYQPV--------------------------------------------PGITLSPSQ-L 273 (500)
T ss_pred hc-ccchhhCCCCceecccccccCC--------------------------------------------ccchhhhcc-c
Confidence 99 8999999998877442211000 000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhC
Q 025982 155 YPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQ 229 (245)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~ 229 (245)
+.-......+... ...+.++|+|||...++.++.++...||.++...++.+. +||||.+|.++.....|+..||
T Consensus 274 ~~~~~~~~~t~~~-~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn 352 (500)
T KOG0120|consen 274 GKVGLLPASTDVP-DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN 352 (500)
T ss_pred cccCCcccccCcc-cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccc
Confidence 0000000001111 133459999999999999999999999999888888753 7999999999999999999999
Q ss_pred CCeeCCeEeEEEEe
Q 025982 230 SLKIGQQQLLITYA 243 (245)
Q Consensus 230 g~~~~g~~i~v~~a 243 (245)
|..+++++|.|+.|
T Consensus 353 Gm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 353 GMQLGDKKLVVQRA 366 (500)
T ss_pred hhhhcCceeEeehh
Confidence 99999999999986
No 91
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.36 E-value=1e-12 Score=95.90 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+||+..++++.|+++|-+.|.|.++++.+++ +||||++|.++++|..|++-||.-.++||+|+|.-|-
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45789999999999999999999999999999999865 7999999999999999999999999999999998763
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.36 E-value=1.2e-12 Score=97.35 Aligned_cols=81 Identities=23% Similarity=0.464 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
++...-..|.|-||.+-++.++ |+.+|+.||.|-.|.+.. |+.++|||||-|....+|+.|+.+|+|..+.|+
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~----LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDD----LRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred CCcccceeEEecceeccCCHHH----HHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 4455567899999999999999 779999999999986654 778999999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025982 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|.|++|.
T Consensus 84 elrVq~ar 91 (256)
T KOG4207|consen 84 ELRVQMAR 91 (256)
T ss_pred eeeehhhh
Confidence 99999875
No 93
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=4.3e-12 Score=102.54 Aligned_cols=182 Identities=14% Similarity=0.181 Sum_probs=115.0
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccC----CeEEEE--eCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG----TILEIL--AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G----~v~~i~--~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
-.|.++|||+++++.| +.++|...- ....|. -..+|+..|-|||.|..+++|+.|+. -|...+..|.|.
T Consensus 162 vivRmRGLPfdat~~d----Vv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALD----VVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHH----HHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHH
Confidence 4577889999999999 668987432 333342 33488999999999999999999999 566666666554
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
+-.+....- .+.. ...... +.....+.++ .+..+....+ ...
T Consensus 237 lFRSTaaEv------------------qqvl-----------nr~~s~-pLi~~~~sp~------~p~~p~~~~p--~~~ 278 (508)
T KOG1365|consen 237 LFRSTAAEV------------------QQVL-----------NREVSE-PLIPGLTSPL------LPGGPARLVP--PTR 278 (508)
T ss_pred HHHHhHHHH------------------HHHH-----------Hhhccc-cccCCCCCCC------CCCCccccCC--CCC
Confidence 422211111 0000 000000 0000000000 0000111111 112
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCC-eeE--EEEecC----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPG-FKE--VRMVEA----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~-v~~--v~~~~~----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 240 (245)
...+|-+++||...+.|||.+||..|.. |.. |.++-+ +.|.|||+|.+.++|.+|.+..|.+...+|-|.|
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 3567999999999999999999998864 444 666553 2689999999999999999988877666666554
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.7e-13 Score=99.61 Aligned_cols=80 Identities=29% Similarity=0.560 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||++|..++++.- |...|-.||.|..|.++ .+.+.||||||+|.-.|+|..|+..||+..+.||+|+|
T Consensus 9 ~KrtlYVGGladeVtekv----LhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKV----LHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHH----HHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 468999999999999999 77999999999998544 57889999999999999999999999999999999999
Q ss_pred EEccccc
Q 025982 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
.++++..
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9998754
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=8.7e-12 Score=80.10 Aligned_cols=72 Identities=28% Similarity=0.576 Sum_probs=63.5
Q ss_pred eEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCC--CceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL--KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~--~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
+|+|+|||..+++++ |.++|..+|.|..+.+..+. ..+|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~----i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEED----LRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHH----HHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999 66999999999888666533 4579999999999999999999999999999998864
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=5.8e-12 Score=80.17 Aligned_cols=68 Identities=28% Similarity=0.515 Sum_probs=60.2
Q ss_pred EcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 20 V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
|+|||..+++++ |.++|+.||.|..+.+.. ++.++|+|||+|.+.++|..|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~----l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEE----LRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHH----HHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999 669999999998886554 46778999999999999999999999999999998873
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1e-12 Score=98.66 Aligned_cols=75 Identities=20% Similarity=0.381 Sum_probs=70.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..++|||++|...+++.-|...|=+||.|..|.++-+- +|||||+|.-.++|.+|+..||+..+.||+|+|-|||
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45789999999999999999999999999999988642 6999999999999999999999999999999999997
No 98
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.9e-12 Score=93.72 Aligned_cols=75 Identities=20% Similarity=0.407 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEec--CCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE--AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~--~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+-+.+|.++|.+||.|..|.|-. ....||||+|+++.+|.-|+.--+|.-++|.+|+|+|++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457899999999999999999999999998877643 336799999999999999999999999999999999985
No 99
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=99.20 Aligned_cols=74 Identities=36% Similarity=0.563 Sum_probs=69.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..+|||+|||..+++++|.++|..||.|..+.+..++ +|+|||+|.++++|..|++.++|..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5789999999999999999999999999999888763 7999999999999999999999999999999999863
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=1.1e-11 Score=104.89 Aligned_cols=73 Identities=27% Similarity=0.454 Sum_probs=70.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..+||+|+|+.+++++|.++|+..|.|.+++++.|+ +||||++|.+.++|..|++.|||..+.|++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 779999999999999999999999999999999865 7999999999999999999999999999999999975
No 101
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=7.6e-12 Score=95.04 Aligned_cols=72 Identities=25% Similarity=0.330 Sum_probs=63.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
-+.|||++|+-.+..++|+.+|.+||+|.+..++.|+ ||||||+|.+.+.|.+|++.- .-.|+||+-.+.+|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 3579999999999999999999999999999999864 899999999999999999865 46678888777654
No 102
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=3.6e-11 Score=99.04 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=70.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeC-CeEeEEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~ 242 (245)
+.++-|||+.||..+.|++|..+|.+.|.|-.++|+.++ +|||||.|.+-++|+.|++.||++.|. ||.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 467889999999999999999999999999999999863 899999999999999999999999998 99999987
Q ss_pred e
Q 025982 243 A 243 (245)
Q Consensus 243 a 243 (245)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 5
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.24 E-value=4.1e-11 Score=76.68 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=49.3
Q ss_pred HHHHHHHhc----cCCCeeEEE-E-ecC------CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 185 PMALQMFFS----QFPGFKEVR-M-VEA------KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 185 ~~~L~~~f~----~~G~v~~v~-~-~~~------~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
+++|+++|+ .||.|.+|. + ++. .+|+|||+|.++++|..|+..|||..+.|++|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999998885 3 321 27999999999999999999999999999999873
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.22 E-value=5.8e-10 Score=93.18 Aligned_cols=215 Identities=17% Similarity=0.207 Sum_probs=121.2
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE-E--EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE-I--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~-i--~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
..-.|.+++||+.|+++| |.++|+-.-.|.. | .+.+-++..|-|||+|++.+.|+.|+. -|...|..|-|.|
T Consensus 102 ~d~vVRLRGLPfscte~d----I~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEv 176 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEED----IVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEV 176 (510)
T ss_pred CCceEEecCCCccCcHHH----HHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEe
Confidence 567899999999999999 7799998755544 3 344567788999999999999999999 6888888889988
Q ss_pred EEccccchHhhhcCCC-cccc----hhhhhhhh--hhh-hccchh---hHhhhcCC------CCc--------cccCCCC
Q 025982 91 QYAKTKSDIIAKADGT-FVPR----ERRKRHEE--KGK-KRKDQH---DANQAGMG------LNP--------AYAGAYG 145 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~--~~~-~~~~~~---~~~~~~~~------~~~--------~~~~~~~ 145 (245)
-.+............. ..++ ......+. +.. ...... .......+ .+. .+-....
T Consensus 177 F~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~ 256 (510)
T KOG4211|consen 177 FRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRD 256 (510)
T ss_pred ehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccc
Confidence 7765433321111110 1110 00000000 000 000000 00000000 000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEec--C--CCeEEEEEEcCHHHH
Q 025982 146 ATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE--A--KPGIAFVEYGDEMQA 221 (245)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~--~--~~g~afV~f~~~~~A 221 (245)
...+... ....................+..++||...++.++.++|+..-.+ .|.+-- + .+|-|+|+|.|.++|
T Consensus 257 ~~~~~~~-g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~eda 334 (510)
T KOG4211|consen 257 PNYPVSS-GPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDA 334 (510)
T ss_pred cccCCCC-CcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhh
Confidence 0000000 000000111111122233678999999999999999999986554 444443 2 278999999999999
Q ss_pred HHHHHHhCCCeeCCe
Q 025982 222 TVAMQSLQSLKIGQQ 236 (245)
Q Consensus 222 ~~Al~~l~g~~~~g~ 236 (245)
..|+.. ++..+..+
T Consensus 335 v~Amsk-d~anm~hr 348 (510)
T KOG4211|consen 335 VGAMGK-DGANMGHR 348 (510)
T ss_pred Hhhhcc-CCcccCcc
Confidence 999963 55555544
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=7.6e-12 Score=110.79 Aligned_cols=159 Identities=15% Similarity=0.249 Sum_probs=133.1
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCC--CCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT--LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~--~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
-+...+++||++||+..+++.+ |+..|..+|.|.+|.+... +...-|+||.|.+...+-.|...+.+..+....
T Consensus 367 DD~~atrTLf~Gnl~~kl~ese----iR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESE----IRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred cchhhhhhhhhcCcccchhhhh----hhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 3466799999999999999999 7799999999999876654 333459999999999999998888887666555
Q ss_pred EEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP 167 (245)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (245)
+++.+..+ .
T Consensus 443 ~r~glG~~-----------------------------------------------------------------------k 451 (975)
T KOG0112|consen 443 HRIGLGQP-----------------------------------------------------------------------K 451 (975)
T ss_pred cccccccc-----------------------------------------------------------------------c
Confidence 55544321 1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC--CeEeEEEEec
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v~~ak 244 (245)
..+++.+++++|+.-+....|...|..||.|..|.+-.+. .|++|.|.+...|++|+..|-|+.|+ .++|+|.||+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq-~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ-PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC-cceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 1356779999999999999999999999999998887776 59999999999999999999999999 7889999985
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=7.2e-11 Score=75.52 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcccCCeEEEE---eC-CC--CCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 29 IDQLKQSLHAVFKQFGTILEIL---AF-KT--LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 29 ~~~l~~~l~~~F~~~G~v~~i~---~~-~~--~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
+++|++.+.+.++.||.|..|. .. .+ +.++|+|||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 4675544444455999998873 22 24 788999999999999999999999999999999876
No 107
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=5.5e-11 Score=103.92 Aligned_cols=75 Identities=23% Similarity=0.444 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..++||+|+.|+..+++.||.++|..||.|.+|.++..+ ++|||.|....+|.+|+++|+...+.++.|+|.||.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 357899999999999999999999999999999999987 899999999999999999999999999999999983
No 108
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=93.06 Aligned_cols=76 Identities=20% Similarity=0.342 Sum_probs=67.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhC-CCeeCCeEeEEEEec
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ-SLKIGQQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~-g~~~~g~~i~v~~ak 244 (245)
+...++|||++|...+++.+|+++|.+||.|.+|.+...+ ++|||+|.+.+.|..|.+..- ...|.|.+|+|.|++
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3345689999999999999999999999999999999887 799999999999999887654 466889999999975
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.1e-09 Score=92.22 Aligned_cols=155 Identities=21% Similarity=0.289 Sum_probs=106.8
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---C--CCcee---EEEEEecCHHHHHHHHHHHcCCccC
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---T--LKHKG---QAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~--~~~kg---~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
.-+++|||++||.+++|++ |...|..||.+..=+-.+ . -..+| |+|+.|+++.++..-+.+... .
T Consensus 257 ~~S~KVFvGGlp~dise~~----i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~ 329 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQ----INASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G 329 (520)
T ss_pred ccccceeecCCCccccHHH----HHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c
Confidence 3378999999999999999 779999999885422211 1 12445 999999999988877765432 3
Q ss_pred CceEEEEEccccchHh-------hhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCC
Q 025982 85 DKPMRIQYAKTKSDII-------AKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPG 157 (245)
Q Consensus 85 g~~i~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (245)
.....+..+.+..... ...+..|.. .
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~---------------------------------d-------------- 362 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVL---------------------------------D-------------- 362 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhh---------------------------------c--------------
Confidence 3333332222211100 000000000 0
Q ss_pred CCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhc-cCCCeeEEEEecC-----CCeEEEEEEcCHHHHHHHHHH
Q 025982 158 GAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFS-QFPGFKEVRMVEA-----KPGIAFVEYGDEMQATVAMQS 227 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~-~~G~v~~v~~~~~-----~~g~afV~f~~~~~A~~Al~~ 227 (245)
......+..|+||++||..++-++|..+|. .||.|.++-|-.| ++|-|-|.|.+..+-.+|+.+
T Consensus 363 ------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 ------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 011123678899999999999999999999 8999999988876 389999999999999999974
No 110
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=4.3e-11 Score=93.56 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=72.3
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
+..+..++++|+|+||.+.++.+| |+..|+.||+|.++.+. ++|+||.|.-.++|..|+..|++..|.|.+
T Consensus 71 SksKsk~stkl~vgNis~tctn~E----lRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 71 SKSKSKASTKLHVGNISPTCTNQE----LRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred ccccCCCccccccCCCCccccCHH----HhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccce
Confidence 444566889999999999999999 77999999999998665 579999999999999999999999999999
Q ss_pred EEEEEcccc
Q 025982 88 MRIQYAKTK 96 (245)
Q Consensus 88 i~v~~~~~~ 96 (245)
++|..+.++
T Consensus 142 m~vq~stsr 150 (346)
T KOG0109|consen 142 MHVQLSTSR 150 (346)
T ss_pred eeeeeeccc
Confidence 999998654
No 111
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9.4e-11 Score=94.01 Aligned_cols=78 Identities=22% Similarity=0.456 Sum_probs=72.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCC-----eEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP-----GIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~-----g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
..||.++|||--|.+-++.+||.-+|+.||.|.++.++++.+ .||||+|.+.++...|..+|++.-|.+++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 456889999999999999999999999999999999999762 399999999999999999999999999999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
|+.
T Consensus 315 FSQ 317 (479)
T KOG0415|consen 315 FSQ 317 (479)
T ss_pred hhh
Confidence 974
No 112
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=99.14 E-value=3.3e-10 Score=72.43 Aligned_cols=75 Identities=20% Similarity=0.394 Sum_probs=56.2
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccC-CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
.-|+|.|||.+.+...|+..|.+++..+| .|..|. .+.|.|.|.+.+.|.+|.+.|+|...+|+.|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999999999999999999999995 777762 3689999999999999999999999999999999975
Q ss_pred ccc
Q 025982 95 TKS 97 (245)
Q Consensus 95 ~~~ 97 (245)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 443
No 113
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=7.2e-10 Score=82.81 Aligned_cols=81 Identities=19% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhccc-CCeEEEEe---CCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-GTILEILA---FKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i~~---~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
......++|..+|....+.+ +..+|.++ |.|..+++ .+||++||||||+|++.+.|.-|-+.||+..|.|+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~----~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETE----ILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccceeecccccchhHHH----HhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 44567899999999999999 55788877 67777655 469999999999999999999999999999999999
Q ss_pred EEEEEcccc
Q 025982 88 MRIQYAKTK 96 (245)
Q Consensus 88 i~v~~~~~~ 96 (245)
|.|.+-.+.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999886654
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-10 Score=92.10 Aligned_cols=81 Identities=22% Similarity=0.381 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.+|.++|||=.|.+-++.++ |+-+|+.||.|.+| ++.++|.+.-||||+|.+.+++.+|+-.|+++.|..++|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeD----LeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDED----LEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred CCCcceEEEEecCCcccccc----hhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 57789999999999999999 77899999999885 666789899999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025982 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.|+.+-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99997653
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=2.7e-10 Score=96.48 Aligned_cols=179 Identities=19% Similarity=0.245 Sum_probs=117.6
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.+..-+.++|+|-|||..+++++ |+.+|+.||.|.+|+ .+...+|.+||+|-++.+|+.|+++|++..+.|+.|
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~----L~~~f~~yGeir~ir--~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDT----LLRIFGAYGEIREIR--ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CcccCccceEEEEecCCcCCHHH----HHHHHHhhcchhhhh--cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 34455689999999999999999 779999999999964 445568999999999999999999999999999988
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
+......+.. . +... ..+....+.++. ...+...
T Consensus 143 k~~~~~~~~~------~-~~~~---------------------------~~~~~~~~~p~a-----------~s~pgg~- 176 (549)
T KOG4660|consen 143 KRPGGARRAM------G-LQSG---------------------------TSFLNHFGSPLA-----------NSPPGGW- 176 (549)
T ss_pred cCCCcccccc------h-hccc---------------------------chhhhhccchhh-----------cCCCCCC-
Confidence 7211111000 0 0000 001111111110 0001111
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+... + ++.|++..+..-+...++.+|.+.. ...+.....-|++|.+..++..++..+ |..+.++...++++
T Consensus 177 ~~~~-~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 177 PRGQ-L-FGMLSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFS 247 (549)
T ss_pred cCCc-c-eeeeccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEec
Confidence 1122 2 2238888887778888888998776 554443347788898888886666633 67777777666664
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=7.8e-11 Score=88.58 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=69.3
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
+..+..++|||.|+...++|+- |.++|.+.|+|..|.+.. +++.| ||||.|.++-+...|++.+||..+.++.
T Consensus 4 aaae~drtl~v~n~~~~v~eel----L~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEEL----LSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHH----HHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccch
Confidence 4466789999999999999998 789999999999886654 66666 9999999999999999999999999999
Q ss_pred EEEEE
Q 025982 88 MRIQY 92 (245)
Q Consensus 88 i~v~~ 92 (245)
++|.+
T Consensus 79 ~q~~~ 83 (267)
T KOG4454|consen 79 EQRTL 83 (267)
T ss_pred hhccc
Confidence 98866
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.01 E-value=9.8e-10 Score=96.29 Aligned_cols=76 Identities=24% Similarity=0.460 Sum_probs=70.1
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
++||||++|+..+++.| |.++|+.||.|.+|.+.. ++|+|||.+.+-.+|.+|+..|+...+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~d----L~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQD----LANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHH----HHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 79999999999999999 779999999999997764 48999999999999999999999999999999999987
Q ss_pred ccc
Q 025982 95 TKS 97 (245)
Q Consensus 95 ~~~ 97 (245)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 543
No 118
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.4e-09 Score=92.33 Aligned_cols=76 Identities=26% Similarity=0.415 Sum_probs=69.1
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeE
Q 025982 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 164 ~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 239 (245)
+...+.++.+|+|-|||..+++++|+.+|+.||+|+.|..-+.+.|.+||+|-|..+|..|++.|++..+.|+.|+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3333446678999999999999999999999999999998888889999999999999999999999999999887
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.91 E-value=2.1e-09 Score=87.46 Aligned_cols=187 Identities=14% Similarity=0.155 Sum_probs=115.4
Q ss_pred eEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCC------CCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT------LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~------~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
.|.|.||.+.++.++ ++.+|...|.|.++.++.+ ......|||.|.+...+..|.. |..+.|-++.|.|
T Consensus 9 vIqvanispsat~dq----m~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQ----MQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHH----HHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 899999999999999 7799999999999877652 1244699999999999999999 5555666665544
Q ss_pred -EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCC------CC-----CCC
Q 025982 91 -QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQI------PY-----PGG 158 (245)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~ 158 (245)
.|...-..... .|+...... ..+...+ ..|.+++..+. +. |..
T Consensus 84 ~p~~~~~~p~r~----af~~l~~~n--------------------avprll~-pdg~Lp~~~~lt~~nh~p~ailktP~L 138 (479)
T KOG4676|consen 84 RPYGDEVIPDRF----AFVELADQN--------------------AVPRLLP-PDGVLPGDRPLTKINHSPNAILKTPEL 138 (479)
T ss_pred EecCCCCCccHH----HHHhcCccc--------------------ccccccC-CCCccCCCCccccccCCccceecCCCC
Confidence 44332211100 010000000 0000000 01111111000 00 000
Q ss_pred CCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-CCeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 159 AKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-KPGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-~~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
++.........-..+++|.+|+..+-..++...|..+|.|.+....-. ...+|.++|........|++ ++|+.+.
T Consensus 139 p~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 139 PPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred ChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 000000000012357999999999999999999999999987766543 24688899999999999998 5676554
No 120
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.91 E-value=1.8e-08 Score=67.74 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=66.0
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC----CceE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY----DKPM 88 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~----g~~i 88 (245)
++|+|+|||...+.++|.+.|.+.|. |...-+ .+.+++-+.|||||.|.+.+.|.+..+.++|..+. .+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~--g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK--GKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc--CcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 68999999999999999888877653 544443 34457778999999999999999999999998886 4588
Q ss_pred EEEEccccch
Q 025982 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
.|.||.-+..
T Consensus 80 ~i~yAriQG~ 89 (97)
T PF04059_consen 80 EISYARIQGK 89 (97)
T ss_pred EEehhHhhCH
Confidence 8888865543
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=9.6e-09 Score=76.90 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=65.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC-CCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQF-PGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~-G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
....+++..+|..+.+..+..+|.+| |.|..+++.+++ +|||||+|.+++.|.-|-+.||+.-|+++.|.|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 45679999999999999999999998 667888887753 79999999999999999999999999999999876
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=9.7e-09 Score=82.46 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=67.6
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHH-cCCccCCceEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKM-QGFPFYDKPMR 89 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l-~~~~~~g~~i~ 89 (245)
.....++|||+||-..+++.+ |+++|-+||.|..|+... .+++|||+|.+-+.|..|.+.. |.+.+.|.+|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~d----IrdhFyqyGeirsi~~~~---~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQD----IRDHFYQYGEIRSIRILP---RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHH----HHHHHhhcCCeeeEEeec---ccccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 345578999999999999999 779999999999987764 3579999999999999998755 55777899999
Q ss_pred EEEccc
Q 025982 90 IQYAKT 95 (245)
Q Consensus 90 v~~~~~ 95 (245)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999887
No 123
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=4.2e-09 Score=81.70 Aligned_cols=83 Identities=27% Similarity=0.392 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
..+++++|||-.||.+..+.| |.++|-.||-|.+- .++-|..+|=|+||.|+++.+|+.|+..|||+.|.=++
T Consensus 281 eGPeGCNlFIYHLPQEFgDaE----liQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAE----LIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred cCCCcceEEEEeCchhhccHH----HHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 367789999999999999999 66999999999873 34458889999999999999999999999999999899
Q ss_pred EEEEEccccc
Q 025982 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.+-+++.
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9988765543
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.83 E-value=6.3e-08 Score=84.32 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=61.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEecC----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEA----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v-~~v~~~~~----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
+|-+.|+|+.++.+||.+||..|-.+ .+|.+-++ .+|.|.|.|++.++|.+|...|++..|..++|++..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 88999999999999999999999654 45555443 279999999999999999999999999999998864
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.83 E-value=6.1e-09 Score=84.32 Aligned_cols=168 Identities=17% Similarity=0.236 Sum_probs=122.5
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcC-CccCCceE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQG-FPFYDKPM 88 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~-~~~~g~~i 88 (245)
...++.|++++...+.+.+ .-.++..+|.+... .......++|++.+.|...+.+..|+. +.+ ....++.+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~----~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESE----DDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKG 160 (285)
T ss_pred cccccccccccccchhhcc----ccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccc
Confidence 3578899999999988886 44788888866554 334567789999999999999999999 454 34444444
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
...+........ ..........
T Consensus 161 ~~dl~~~~~~~~----------------------------------------------------------~n~~~~~~~~ 182 (285)
T KOG4210|consen 161 EKDLNTRRGLRP----------------------------------------------------------KNKLSRLSSG 182 (285)
T ss_pred cCcccccccccc----------------------------------------------------------cchhcccccC
Confidence 333322111000 0000011112
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++...++++|++..+++++|..+|..+|.|..+++...+ +|+|+|.|.+...+..++.. +...++++++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 234445599999999999999999999999999988753 68999999999999999987 888899999998875
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 262 ~ 262 (285)
T KOG4210|consen 262 E 262 (285)
T ss_pred C
Confidence 4
No 126
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.78 E-value=3.4e-08 Score=86.10 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEe
Q 025982 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 238 (245)
.+|.++.|||+||+++++++.|...|+.||.|..|+++..+ +.+|||.|-+..+|.+|+..|+|..+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 34566779999999999999999999999999999998743 5699999999999999999999999999999
Q ss_pred EEEEec
Q 025982 239 LITYAK 244 (245)
Q Consensus 239 ~v~~ak 244 (245)
++.|+|
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999986
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=5.5e-10 Score=98.84 Aligned_cols=137 Identities=22% Similarity=0.266 Sum_probs=110.9
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..++||+||++.+.+.+ |...|..+|.+..+.+. ..+..+|.||++|...++|.+|+.......+.
T Consensus 667 ~~~~fvsnl~~~~~~~d----l~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEED----LSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------- 735 (881)
T ss_pred HHHHHHhhcchhhcCch----hhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-------
Confidence 36789999999999999 66899999888765322 46778999999999999999999954433211
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
.
T Consensus 736 -------------------------------------------------------------------------------K 736 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------K 736 (881)
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
..++|+|.|+..|.+.|+.+++.+|++++..++..+ +|.|+|.|.++.+|.+++..++...+..+.+.|.
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~ 810 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQ 810 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccc
Confidence 238999999999999999999999999988877643 7899999999999999998887766664444443
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.77 E-value=1.8e-08 Score=85.90 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=67.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+..|+|.+|...+--.||+++|++||.|.-.+++.+. +=|+||+|.+..+|.+++.+||.+.++|+.|.|.-||
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4569999999999999999999999999888888742 3499999999999999999999999999999999887
No 129
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.74 E-value=2.2e-07 Score=70.53 Aligned_cols=74 Identities=27% Similarity=0.466 Sum_probs=62.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEec-CC-----CeEEEEEEcCHHHHHHHHHHhCCCeeC---CeEeEEE
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE-AK-----PGIAFVEYGDEMQATVAMQSLQSLKIG---QQQLLIT 241 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~-~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~i~v~ 241 (245)
-+||||.+||..+..-+|..+|..|-.-....+-. ++ +-+|||.|.+..+|..|+..|||..|+ +.+|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 36799999999999999999999885544333322 11 359999999999999999999999998 9999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
+||
T Consensus 114 lAK 116 (284)
T KOG1457|consen 114 LAK 116 (284)
T ss_pred ehh
Confidence 997
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.73 E-value=8e-08 Score=83.68 Aligned_cols=192 Identities=11% Similarity=0.081 Sum_probs=123.2
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE--EeCC-CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI--LAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i--~~~~-~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
-+..+-+.++++..++.| ++.+|... .|..+ ..++ .+...|.++|.|..+.++.+|++ .|...+..|.+.+
T Consensus 310 d~~y~~~~gm~fn~~~nd----~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFND----GRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQT 383 (944)
T ss_pred hhheeeecccccccccch----hhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceee
Confidence 356778889999999999 55777643 33332 2222 33447899999999999999999 6777788899988
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
..+......... .+.... . +......++.+..+.....+.... . ......
T Consensus 384 ~P~g~~~~~~a~---~~~~~~-----------------------~-~~~~~~~hg~p~~~pr~~~~~gq~--v-p~P~~a 433 (944)
T KOG4307|consen 384 GPPGNLGRNGAP---PFQAGV-----------------------P-PPVIQNNHGRPIAPPRAMVRPGQN--V-PFPGGA 433 (944)
T ss_pred cCCCccccccCc---cccccC-----------------------C-CCcccccCCCCCCCcccccCCCCC--C-CCCCCc
Confidence 776443321110 000000 0 001111122222221111111111 1 112234
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeE-EEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKE-VRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~-v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
+.+|||..||..+++.++.++|+....|.+ |.|.+.. ++.|||.|.+++++..|+..-+.+-++.+.|+|.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 567999999999999999999997777755 7777643 6899999999999999998666666667778775
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=3.4e-08 Score=84.17 Aligned_cols=81 Identities=12% Similarity=0.341 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCC---ceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK---HKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~---~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.-+++|||.+|+..+--.+ |..+|+.||.|..-.+..+-+ .+=|+||.+.+.++|.++|..||...++|+.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtD----LKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATD----LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred ccccceeeeccccchhhhH----HHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 3478999999999999999 559999999997644333222 344999999999999999999999999999999
Q ss_pred EEEccccc
Q 025982 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|+.++...
T Consensus 479 VEkaKNEp 486 (940)
T KOG4661|consen 479 VEKAKNEP 486 (940)
T ss_pred eeecccCc
Confidence 99987543
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=5e-08 Score=76.39 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=69.8
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE--EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i--~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
..+|+|.|||..++++| |.++|..||.+..+ +..+.|.+.|.|-|.|..-++|..|++.+|++.+.|+.+++..
T Consensus 83 ~~~v~v~NL~~~V~~~D----l~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDAD----LKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHH----HHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 47899999999999999 66999999877654 6778999999999999999999999999999999999999988
Q ss_pred cccc
Q 025982 93 AKTK 96 (245)
Q Consensus 93 ~~~~ 96 (245)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.67 E-value=1.9e-08 Score=77.57 Aligned_cols=161 Identities=17% Similarity=0.299 Sum_probs=109.8
Q ss_pred CCeEEEcCCCcccCHHH-HHHHHHHhhcccCCeEE--EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQ-LKQSLHAVFKQFGTILE--ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~-l~~~l~~~F~~~G~v~~--i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
--..+++++-..+..+- |- +...|+.|-.+.. +.-.+.+..++++|+.|.....-.++...-++..+.-+.+++.
T Consensus 96 vf~p~~~~~g~~v~pep~lp--~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLP--LPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccCCCCCCc--chhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 34455666665555544 22 3567777654433 2333456678899999987777777666555554444444332
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
-....... .... .....
T Consensus 174 ~gtswedP-------------------------------------------------------------sl~e--w~~~D 190 (290)
T KOG0226|consen 174 AGTSWEDP-------------------------------------------------------------SLAE--WDEDD 190 (290)
T ss_pred cccccCCc-------------------------------------------------------------cccc--Ccccc
Confidence 22111100 0001 11234
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEE
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 240 (245)
..||.+.|...++++-|-..|.+|-....-++++++ +||+||.|.++.++..|+..|+|.-++.++|++
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 579999999999999999999999888778888864 799999999999999999999999999998865
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=2.9e-07 Score=61.93 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=60.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC--CCeeEEEEecC-----CCeEEEEEEcCHHHHHHHHHHhCCCeeC----CeEeEE
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQF--PGFKEVRMVEA-----KPGIAFVEYGDEMQATVAMQSLQSLKIG----QQQLLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~--G~v~~v~~~~~-----~~g~afV~f~~~~~A~~Al~~l~g~~~~----g~~i~v 240 (245)
+||.|+|+|...+.++|.+++... |....+.++.| ..|||||.|.+++.|..-.+.++|..+. .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 579999999999999998887532 45555555543 2699999999999999999999998775 777888
Q ss_pred EEec
Q 025982 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
+||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8886
No 135
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.66 E-value=2.6e-09 Score=87.79 Aligned_cols=147 Identities=22% Similarity=0.342 Sum_probs=115.9
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhccc--CCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC-CccCCceEEEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQF--GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG-FPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~--G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~-~~~~g~~i~v~~ 92 (245)
+.+|++||.+.++.++ |+.+|... |.-..+. . ..||+||.+.+...|.+|++.++| ..+.|.++.+++
T Consensus 2 nklyignL~p~~~psd----l~svfg~ak~~~~g~fl-~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSD----LESVFGDAKIPGSGQFL-V----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHH----HHHHhccccCCCCccee-e----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 4689999999999999 77888764 1111111 1 248999999999999999999988 667799999888
Q ss_pred ccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 025982 93 AKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNN 172 (245)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+-++.-+ ++
T Consensus 73 sv~kkqr-----------------------------------------------------------------------sr 81 (584)
T KOG2193|consen 73 SVPKKQR-----------------------------------------------------------------------SR 81 (584)
T ss_pred hhhHHHH-----------------------------------------------------------------------hh
Confidence 6544331 12
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
.+-++|+|...-++-|..+...||.+..+..+... +-..-|.|.+.+.+..|+.+++|..+....+++.|
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 36788999999999999999999999877665432 33455789999999999999999999988888776
No 136
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.65 E-value=9.4e-08 Score=76.86 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCee--------EEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFK--------EVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~--------~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
.++.|||.|||..+|.+++..+|+++|.|. .|+|+++. +|-|++.|--.++...|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456699999999999999999999999884 37888754 799999999999999999999999999999
Q ss_pred eEEEEec
Q 025982 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|+.||
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999886
No 137
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=2.7e-08 Score=76.22 Aligned_cols=69 Identities=20% Similarity=0.425 Sum_probs=64.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+||++||..+.+.+|..+|..||.+..+.+. .||+||+|.+..+|.-|+..+|+..|.|.++.|.||+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 48999999999999999999999999888774 4899999999999999999999999998889999986
No 138
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.63 E-value=1.8e-06 Score=70.49 Aligned_cols=157 Identities=19% Similarity=0.230 Sum_probs=103.3
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhccc----CCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF----GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~----G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
...+..+..++||-..++.+| ..+|.-. |.+. +...-.|+..|.+.|.|.+.|.-+-|++ .|...+.++.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~i----a~ff~gl~ia~gg~a-KOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ry 130 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDI----ARFFKGLNIANGGRA-LCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRY 130 (508)
T ss_pred cCcceEEEecCCCCCcccCCH----HHHHhhhhcccccee-eeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCc
Confidence 334567788999999999994 4555532 3332 2333456677899999999999999998 6888888888
Q ss_pred EEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAP 167 (245)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (245)
|.|--+..... .....+. ..........
T Consensus 131 ievYka~ge~f-~~iagg~--------------------------------------------------s~e~~~flsk- 158 (508)
T KOG1365|consen 131 IEVYKATGEEF-LKIAGGT--------------------------------------------------SNEAAPFLSK- 158 (508)
T ss_pred eeeeccCchhh-eEecCCc--------------------------------------------------cccCCCCCCc-
Confidence 88755443222 1000000 0000000000
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccC----CCeeEEEEecC---C-CeEEEEEEcCHHHHHHHHHH
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQF----PGFKEVRMVEA---K-PGIAFVEYGDEMQATVAMQS 227 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~----G~v~~v~~~~~---~-~g~afV~f~~~~~A~~Al~~ 227 (245)
...-.+-+++||+.+++.|+..||.+. |....|.++.. + +|.|||.|.++++|+.||.+
T Consensus 159 -~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 159 -ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred -ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 012246788999999999999999632 23455666652 3 89999999999999999975
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.59 E-value=2.3e-07 Score=72.70 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
...|+|.|||..++++||+++|..||.++.+-+..++ .|.|-|.|...++|.+|++.+||..+.|+.|++...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3679999999999999999999999999999888865 579999999999999999999999999999988753
No 140
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.59 E-value=1.6e-07 Score=64.56 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=45.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCC-----eeCCeEeEEE
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL-----KIGQQQLLIT 241 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-----~~~g~~i~v~ 241 (245)
..|.|.+++..++.++|++.|+.||.|.+|.+.++. ..|+|.|.+++.|+.|+..+... .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999999999987 49999999999999999887433 4445555443
No 141
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.56 E-value=1.1e-07 Score=77.36 Aligned_cols=80 Identities=18% Similarity=0.331 Sum_probs=69.4
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..+|||++||.++++++ |.+.|++||.|..+ .+..+...+||+||.|.+.+.++++.. ..-..|.|+.+.|.
T Consensus 97 tkkiFvGG~~~~~~e~~----~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEED----FKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHH----HhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEe
Confidence 56999999999999999 66999999988775 344567789999999999999999988 67788999999999
Q ss_pred EccccchH
Q 025982 92 YAKTKSDI 99 (245)
Q Consensus 92 ~~~~~~~~ 99 (245)
.|.++...
T Consensus 172 rA~pk~~~ 179 (311)
T KOG4205|consen 172 RAIPKEVM 179 (311)
T ss_pred eccchhhc
Confidence 99887663
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.55 E-value=1.4e-07 Score=79.79 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=63.9
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
...|||+|||+++++++ |.+.|..||.|....+.. .+++..||||+|.+.+.+..|++ .+...+.++++.|+
T Consensus 288 ~~~i~V~nlP~da~~~~----l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAE----LEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHH----HHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEE
Confidence 45599999999999999 779999999999854332 34455899999999999999999 57888899999997
Q ss_pred Eccc
Q 025982 92 YAKT 95 (245)
Q Consensus 92 ~~~~ 95 (245)
--..
T Consensus 363 ek~~ 366 (419)
T KOG0116|consen 363 EKRP 366 (419)
T ss_pred eccc
Confidence 7544
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.50 E-value=8.3e-07 Score=57.01 Aligned_cols=68 Identities=18% Similarity=0.383 Sum_probs=47.9
Q ss_pred cEEEEeCCCCCCCHHH----HHHHhccCCC-eeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMA----LQMFFSQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~----L~~~f~~~G~-v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+.|+|.|||....... |+.++..+|. |..|. .+.|+|.|.+++.|.+|...|+|--+.|++|.|+|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999998887665 5677778874 65552 2689999999999999999999999999999999974
No 144
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.47 E-value=2.3e-07 Score=71.65 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccC---CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG---TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G---~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
-+-+||.+.|..+++.+. |...|..|- .-..|++.++|+++||+||.|.+..++..|+..|||...+.+.|++
T Consensus 189 ~DfRIfcgdlgNevnd~v----l~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDV----LARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred ccceeecccccccccHHH----HHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 367999999999999998 446665553 3445789999999999999999999999999999999999998876
Q ss_pred EE
Q 025982 91 QY 92 (245)
Q Consensus 91 ~~ 92 (245)
.-
T Consensus 265 Rk 266 (290)
T KOG0226|consen 265 RK 266 (290)
T ss_pred hh
Confidence 44
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=4.7e-07 Score=79.18 Aligned_cols=80 Identities=23% Similarity=0.424 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--C----CCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--T----LKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~----~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.+-+++|||+||++.++++. |...|..||+|..|.++- + ...+.++||-|.+-.+|.+|+..|+|..+.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~----ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENF----LLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCcccceeeecCCccccHHH----HHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 45688999999999999999 669999999999886552 2 2345799999999999999999999999999
Q ss_pred ceEEEEEccc
Q 025982 86 KPMRIQYAKT 95 (245)
Q Consensus 86 ~~i~v~~~~~ 95 (245)
..+++.|++.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999999854
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.36 E-value=9.9e-07 Score=69.28 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
....++|+|++..++.+++..+|+.||.|..+.+..++ +|++||+|.+.+.+..|+. |||..+.|+.|.|++.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 34569999999999999999999999999888877653 7899999999999999999 99999999999998854
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=9.7e-07 Score=74.72 Aligned_cols=70 Identities=33% Similarity=0.523 Sum_probs=60.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEec----CC-CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE----AK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~----~~-~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
..|||+|||..++..+|.++|..||.|+...|.. ++ ..||||+|.+.+++..|+++ +-..+++++|.|+-
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 3499999999999999999999999997766654 11 26999999999999999985 57888899999974
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.32 E-value=1.2e-06 Score=68.78 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeE--EEE-eCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL--EIL-AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~--~i~-~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
....+.+||+|+.+.++.++ +...|+.||.|. .|. +...++.+||+||+|.+.+.+..|+. ||+..+.|+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~----~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTK----IELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred ccCCceEEEeccccccccch----hhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 44568899999999999999 679999999996 343 33356789999999999999999999 99999999999
Q ss_pred EEEEcccc
Q 025982 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
.|.+....
T Consensus 173 ~vt~~r~~ 180 (231)
T KOG4209|consen 173 EVTLKRTN 180 (231)
T ss_pred eeeeeeee
Confidence 99886544
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=3.2e-07 Score=69.42 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=66.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
...+|||.|+...++++-|.++|=.-|.|..|.|..++ ..||||.|.++.....|++.+||-.+.+..|.+++
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 45679999999999999999999999999999988754 23999999999999999999999999999998876
No 150
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=4.7e-05 Score=65.44 Aligned_cols=82 Identities=17% Similarity=0.313 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCc--ccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccC-Cce
Q 025982 13 SPNNTIYINNLNE--KVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-DKP 87 (245)
Q Consensus 13 ~~~~~l~V~nLp~--~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~-g~~ 87 (245)
--..+|+|.|+|- ....+-|+.-|..+|+.+|.|..+..+ ..|.++||.|++|.+..+|..|++.|||..+. +++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4578999999994 445778888899999999999887655 45669999999999999999999999998887 678
Q ss_pred EEEEEcc
Q 025982 88 MRIQYAK 94 (245)
Q Consensus 88 i~v~~~~ 94 (245)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 8886644
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.90 E-value=2.7e-05 Score=62.81 Aligned_cols=82 Identities=21% Similarity=0.415 Sum_probs=64.4
Q ss_pred CCeEEEcCCCcccCHHHHHHHH--HHhhcccCCeEEEEeCCCC---Cce-e--EEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 15 NNTIYINNLNEKVKIDQLKQSL--HAVFKQFGTILEILAFKTL---KHK-G--QAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l--~~~F~~~G~v~~i~~~~~~---~~k-g--~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.+-|||-+||+.+..++...-| .++|.+||.|..|.+.+.- .+. + -.||.|.+.|+|..|+...+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 4568999999998877733333 4799999999998766421 111 2 238999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025982 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997644
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.89 E-value=2.2e-05 Score=63.94 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=66.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--------VRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~--------v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g 235 (245)
....++||.+||..+++++|.++|.++|.|+. |.+..++ |+-|.|.|.++..|+.|+.-+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35567999999999999999999999998832 3444433 7899999999999999999999999999
Q ss_pred eEeEEEEecC
Q 025982 236 QQLLITYAKK 245 (245)
Q Consensus 236 ~~i~v~~ak~ 245 (245)
.+|+|.+|.+
T Consensus 144 n~ikvs~a~~ 153 (351)
T KOG1995|consen 144 NTIKVSLAER 153 (351)
T ss_pred CCchhhhhhh
Confidence 9999998864
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.86 E-value=2.1e-05 Score=64.03 Aligned_cols=87 Identities=25% Similarity=0.329 Sum_probs=74.5
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE--------E---EeCCCCCceeEEEEEecCHHHHHHHH
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------I---LAFKTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i---~~~~~~~~kg~afV~F~~~e~A~~a~ 75 (245)
..+++.+-..+|||-+||..+++++ |.++|.++|.|.. | ....|+..||-|.|.|.+...|+.|+
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~----~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai 133 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCEND----NADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAI 133 (351)
T ss_pred CccccccccccceeeccCccchHHH----HHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhh
Confidence 4556677788999999999999999 7799999987754 2 23357889999999999999999999
Q ss_pred HHHcCCccCCceEEEEEccccc
Q 025982 76 EKMQGFPFYDKPMRIQYAKTKS 97 (245)
Q Consensus 76 ~~l~~~~~~g~~i~v~~~~~~~ 97 (245)
.-+++..|.+.+|+|.++....
T Consensus 134 ~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 134 EWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hhhccccccCCCchhhhhhhcc
Confidence 9999999999999998886554
No 154
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.82 E-value=0.00013 Score=52.43 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=59.7
Q ss_pred CCCCCeEEEcCCC-----cccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 12 ISPNNTIYINNLN-----EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp-----~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.||..+|.|.=+. ...-.++|...|.+.|..||.+.-|++.. +.-+|.|.+-++|-+|+. ++|..+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCE
Confidence 5677788887666 34567778888889999999998887764 468999999999999999 999999999
Q ss_pred eEEEEEccc
Q 025982 87 PMRIQYAKT 95 (245)
Q Consensus 87 ~i~v~~~~~ 95 (245)
.|+|..-.+
T Consensus 98 ~l~i~LKtp 106 (146)
T PF08952_consen 98 TLKIRLKTP 106 (146)
T ss_dssp EEEEEE---
T ss_pred EEEEEeCCc
Confidence 999988543
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.79 E-value=0.00019 Score=48.70 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=50.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEE------------EecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCe-Ee
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVR------------MVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QL 238 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~------------~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~i 238 (245)
+-+.|-+.|.. .-..+...|++||.|.+.. -.+....+.-|.|+++.+|.+||+ -||..+.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 44777788866 5567788999999987664 223334799999999999999998 699999964 56
Q ss_pred EEEEe
Q 025982 239 LITYA 243 (245)
Q Consensus 239 ~v~~a 243 (245)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 67775
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.78 E-value=0.00012 Score=50.41 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=44.0
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC-----CccCCceEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG-----FPFYDKPMRI 90 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~-----~~~~g~~i~v 90 (245)
..|+|.|++..++.++ |.+.|+.||.|..|-+.+. -..|||.|.+.+.|.+|+..+.. ..+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~----iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSRED----IKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHH----HHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHH----HHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 5789999999999999 6699999999998866542 24899999999999999987753 3555666666
Q ss_pred EEccc
Q 025982 91 QYAKT 95 (245)
Q Consensus 91 ~~~~~ 95 (245)
.....
T Consensus 75 ~vLeG 79 (105)
T PF08777_consen 75 EVLEG 79 (105)
T ss_dssp E---H
T ss_pred EECCC
Confidence 55443
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=0.00013 Score=43.49 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=42.8
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHH
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~ 75 (245)
+.|-|.|.+++..+. +..+|..+|.|..+... ....+.+|.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-----vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-----VLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-----HHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 568899999887765 44688999999998776 23579999999999999985
No 158
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.67 E-value=0.00052 Score=49.41 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=53.3
Q ss_pred CCCCCcEEEEeCCC-----CCCCH----HHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 167 PAPPNNILFVQNVP-----HDTTP----MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 167 ~~~~~~~l~v~nl~-----~~~~~----~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
..|+..++.|.=+. ...-. .+|.+.|..||.+.-|+++-+ .-.|.|.+-+.|.+|+. ++|..++|+.
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~---~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD---TMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT---CEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC---eEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 34566777776444 12223 367889999999998888764 58999999999999997 9999999999
Q ss_pred eEEEE
Q 025982 238 LLITY 242 (245)
Q Consensus 238 i~v~~ 242 (245)
|+|.+
T Consensus 99 l~i~L 103 (146)
T PF08952_consen 99 LKIRL 103 (146)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00017 Score=43.03 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=41.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHH
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAM 225 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al 225 (245)
+.|-|.+.+....+. +..+|..||.|..+.+.... ...+|.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~-~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST-NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC-cEEEEEECCHHHHHhhC
Confidence 347788888655544 55588899999998887444 69999999999999986
No 160
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.62 E-value=2.9e-05 Score=60.48 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=50.0
Q ss_pred HHHHHHhc-cCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 186 MALQMFFS-QFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 186 ~~L~~~f~-~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+++...|+ +||.|..+++-.+. .|.++|.|...++|.+|++.||+.+|.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45666667 99999888776643 689999999999999999999999999999998874
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.58 E-value=4.5e-05 Score=63.43 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=56.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC------------------CCeEEEEEEcCHHHHHHHHHHhCC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA------------------KPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~------------------~~g~afV~f~~~~~A~~Al~~l~g 230 (245)
-++.+|.+.|||....-+.|..+|+.+|.|+.|++..- .+-+|+|+|.+.+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999999999999999999999998863 035899999999999999998865
Q ss_pred CeeC
Q 025982 231 LKIG 234 (245)
Q Consensus 231 ~~~~ 234 (245)
..-+
T Consensus 309 e~~w 312 (484)
T KOG1855|consen 309 EQNW 312 (484)
T ss_pred hhhh
Confidence 4433
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.58 E-value=3.9e-05 Score=59.65 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=59.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-------------C----eEEEEEEcCHHHHHHHHHHhCCCee
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-------------P----GIAFVEYGDEMQATVAMQSLQSLKI 233 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-------------~----g~afV~f~~~~~A~~Al~~l~g~~~ 233 (245)
.-++|++|+|+.+...-|+++|+.||.|=+|.|.+.. + .-|-|+|.+-..|......||+.+|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4589999999999999999999999999999998732 0 1578999999999999999999999
Q ss_pred CCeE
Q 025982 234 GQQQ 237 (245)
Q Consensus 234 ~g~~ 237 (245)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00025 Score=61.14 Aligned_cols=72 Identities=19% Similarity=0.304 Sum_probs=58.5
Q ss_pred CCcEEEEeCCCC--CCCH----HHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeC-CeEe
Q 025982 170 PNNILFVQNVPH--DTTP----MALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIG-QQQL 238 (245)
Q Consensus 170 ~~~~l~v~nl~~--~~~~----~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i 238 (245)
-.++++|-|.|- .... .-|..+|+++|.+....+..+. +||.|++|++..+|..|++.|||..|. .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 456799999982 2222 3467899999999888887643 799999999999999999999999988 7777
Q ss_pred EEE
Q 025982 239 LIT 241 (245)
Q Consensus 239 ~v~ 241 (245)
.|-
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 664
No 164
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.56 E-value=0.00068 Score=43.73 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=45.0
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~ 80 (245)
......||+ .|..+...| |.++|+.||.|.--++..+ .|||...+.+.|..++..+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~D----I~qlFspfG~I~VsWi~dT-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSD----IYQLFSPFGQIYVSWINDT-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHH----HHHHCCCCCCEEEEEECTT-----EEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhh----HHHHhccCCcEEEEEEcCC-----cEEEEeecHHHHHHHHHHhcc
Confidence 345667777 999999999 7899999999977677665 799999999999999987653
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.56 E-value=0.00024 Score=57.47 Aligned_cols=74 Identities=15% Similarity=0.356 Sum_probs=60.9
Q ss_pred CCcEEEEeCCCCCCCHHHH------HHHhccCCCeeEEEEecCC------Ce--EEEEEEcCHHHHHHHHHHhCCCeeCC
Q 025982 170 PNNILFVQNVPHDTTPMAL------QMFFSQFPGFKEVRMVEAK------PG--IAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L------~~~f~~~G~v~~v~~~~~~------~g--~afV~f~~~~~A~~Al~~l~g~~~~g 235 (245)
...-+||-+|+..+..|+. .++|++||.|+.|.+-+.. .+ -.+|.|.+-++|.+++...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3456899999988877762 5889999999988776521 12 34999999999999999999999999
Q ss_pred eEeEEEEe
Q 025982 236 QQLLITYA 243 (245)
Q Consensus 236 ~~i~v~~a 243 (245)
|-|+..|.
T Consensus 193 r~lkatYG 200 (480)
T COG5175 193 RVLKATYG 200 (480)
T ss_pred ceEeeecC
Confidence 99999885
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.53 E-value=5.8e-05 Score=58.71 Aligned_cols=69 Identities=16% Similarity=0.306 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCC-----------Cce----eEEEEEecCHHHHHHHHHHH
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL-----------KHK----GQAWLVFKDVASATAAVEKM 78 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~-----------~~k----g~afV~F~~~e~A~~a~~~l 78 (245)
..-.||+++||+.+...- |+++|+.||.|-.|.+.+.. .++ .-|+|+|.+...|..+...|
T Consensus 73 k~GVvylS~IPp~m~~~r----lReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVR----LREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred cceEEEeccCCCccCHHH----HHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 456899999999999998 66888999999888665421 222 25789999999999999999
Q ss_pred cCCccCCc
Q 025982 79 QGFPFYDK 86 (245)
Q Consensus 79 ~~~~~~g~ 86 (245)
|+..|.|+
T Consensus 149 nn~~Iggk 156 (278)
T KOG3152|consen 149 NNTPIGGK 156 (278)
T ss_pred CCCccCCC
Confidence 99999876
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.44 E-value=0.00044 Score=46.93 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=52.0
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC----------CCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF----------KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~----------~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
.+-|.|=|.|+..+.. +.+.|++||.|.+.... ......+.-.|.|.+..+|.+|+. .||..+.
T Consensus 6 ~~wVtVFGfp~~~~~~-----Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPSASNQ-----VLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp CCEEEEE---GGGHHH-----HHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CeEEEEEccCHHHHHH-----HHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 4568888999986654 45899999999887411 111234688999999999999999 7999999
Q ss_pred Cc-eEEEEEcc
Q 025982 85 DK-PMRIQYAK 94 (245)
Q Consensus 85 g~-~i~v~~~~ 94 (245)
|. .+-|.+.+
T Consensus 80 g~~mvGV~~~~ 90 (100)
T PF05172_consen 80 GSLMVGVKPCD 90 (100)
T ss_dssp TCEEEEEEE-H
T ss_pred CcEEEEEEEcH
Confidence 86 66677764
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.40 E-value=0.00053 Score=54.54 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCcEEEEeCCC--CCCC---HHHHHHHhccCCCeeEEEEecCC------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEe
Q 025982 170 PNNILFVQNVP--HDTT---PMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 170 ~~~~l~v~nl~--~~~~---~~~L~~~f~~~G~v~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 238 (245)
++.+|.++|+- ..+. ++++...+.+||.|..|.++-.+ .--.||+|..+++|.+|+-.|||+-|+|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 44557777773 3443 34678889999999888776532 2258999999999999999999999999999
Q ss_pred EEEE
Q 025982 239 LITY 242 (245)
Q Consensus 239 ~v~~ 242 (245)
+.+|
T Consensus 360 ~A~F 363 (378)
T KOG1996|consen 360 SACF 363 (378)
T ss_pred ehee
Confidence 9887
No 169
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.34 E-value=0.0022 Score=45.74 Aligned_cols=80 Identities=24% Similarity=0.337 Sum_probs=61.0
Q ss_pred CCCCCCCeEEEcCCCcccCH-HHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 10 NEISPNNTIYINNLNEKVKI-DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~-~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
...+|-.+|.|+=|...+.. +|+ +.+.+..+.||+|.+|... .+..|.|.|.+..+|.+|+.+++. ...|+.+
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl-~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDL-KSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHH-HHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 34667778889887777654 343 3455777999999998654 246899999999999999998776 5668889
Q ss_pred EEEEccc
Q 025982 89 RIQYAKT 95 (245)
Q Consensus 89 ~v~~~~~ 95 (245)
++.|-..
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 9888543
No 170
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.31 E-value=0.00017 Score=58.68 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=67.5
Q ss_pred CCeEE-EcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 15 NNTIY-INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 15 ~~~l~-V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++| |++|+..+++++ |+.+|..+|.|..++++. ++.++|+|+|.|.....+..++.. +...+.++++.+
T Consensus 184 s~~~~~~~~~~f~~~~d~----~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDD----LKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred cccceeecccccccchHH----HhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 34555 999999999999 668999999999987654 788999999999999999999986 778888999999
Q ss_pred EEccccch
Q 025982 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.+..+...
T Consensus 259 ~~~~~~~~ 266 (285)
T KOG4210|consen 259 EEDEPRPK 266 (285)
T ss_pred ccCCCCcc
Confidence 99876544
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.00096 Score=52.14 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=51.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-C---CeEEEEEEcCHHHHHHHHHHhCCCe
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-K---PGIAFVEYGDEMQATVAMQSLQSLK 232 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-~---~g~afV~f~~~~~A~~Al~~l~g~~ 232 (245)
..|+|.||..-++.+.|..-|+.||.|..-.++.+ + .+-++|.|+....|..|+..++..-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCc
Confidence 45999999999999999999999999966554443 2 5789999999999999999885433
No 172
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.26 E-value=0.00034 Score=60.70 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=63.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccC-CCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC---CeEeEEEE
Q 025982 167 PAPPNNILFVQNVPHDTTPMALQMFFSQF-PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG---QQQLLITY 242 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~-G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~i~v~~ 242 (245)
....+++|+|.||-...|..+|+.++++- |.|....|-+- +..|||.|.+.++|.....+|||-.+- ++.|.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 45678899999999999999999999954 45655444333 368999999999999999999996654 88899999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
+.
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 75
No 173
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.08 E-value=2.1e-05 Score=70.54 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=107.4
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCC---ceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK---HKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~---~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
...+...+.++.+...+.++ ....|..+|.|..|.....|. ...+.++.++...++..|.. ..+-.+.++...
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~---~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~a 644 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEI---QRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAA 644 (881)
T ss_pred hhhhhhcccCCCcchhhHHh---hHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCcccc
Confidence 34566778888887777652 678999999999997654221 22377788887777777776 566666666666
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
+..+.+....... ........
T Consensus 645 v~~ad~~~~~~~~-----------------------------------------------------------kvs~n~~R 665 (881)
T KOG0128|consen 645 VGLADAEEKEENF-----------------------------------------------------------KVSPNEIR 665 (881)
T ss_pred CCCCCchhhhhcc-----------------------------------------------------------CcCchHHH
Confidence 6554433210000 00000011
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEe--cC--C-CeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMV--EA--K-PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~--~~--~-~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
...++|++||+..+.+++|...|+.+|.+..+.+. .+ + +|+|+++|..++++.+|+....++.++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 23468999999999999999999999988665554 22 2 799999999999999999855544444
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.00 E-value=0.0085 Score=38.75 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g 230 (245)
...+.+|. .|..+...||.++|++||.|. |.-+.+ .-|||.+.+.+.|..|+..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--CcEEEEeecHHHHHHHHHHhcc
Confidence 34567776 899999999999999999863 444444 3799999999999999988753
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.98 E-value=0.00063 Score=56.83 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=54.9
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCC----------------ceeEEEEEecCHHHHHHHH
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLK----------------HKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~----------------~kg~afV~F~~~e~A~~a~ 75 (245)
..++++|.+-|||.+-.-+. |..+|+.+|.|..|++.+.|. .+-+|+|+|...+.|.+|.
T Consensus 228 el~srtivaenLP~Dh~~en----l~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYEN----LSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccceEEEecCCcchHHHH----HHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 34789999999999887777 779999999999998775421 2348999999999999999
Q ss_pred HHHcCC
Q 025982 76 EKMQGF 81 (245)
Q Consensus 76 ~~l~~~ 81 (245)
+.++..
T Consensus 304 e~~~~e 309 (484)
T KOG1855|consen 304 ELLNPE 309 (484)
T ss_pred Hhhchh
Confidence 977653
No 176
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.90 E-value=0.0014 Score=59.56 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=68.3
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC--CceE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~--g~~i 88 (245)
...+++.+|+++|++.+.... |...|..||+|..|-.... -.||+|.|++...|+.|++.|-|..|. .+.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~----l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~ 523 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSR----LNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRL 523 (975)
T ss_pred ccccceeeccCCCCCCChHHH----HHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCccc
Confidence 567789999999999999888 7799999999988866543 369999999999999999999999998 4689
Q ss_pred EEEEccc
Q 025982 89 RIQYAKT 95 (245)
Q Consensus 89 ~v~~~~~ 95 (245)
.|.|+..
T Consensus 524 rvdla~~ 530 (975)
T KOG0112|consen 524 RVDLASP 530 (975)
T ss_pred ccccccC
Confidence 9988754
No 177
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.90 E-value=0.0071 Score=43.20 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=54.9
Q ss_pred CCCcEEEEeCCCCCC----CHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDT----TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~----~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+|=.+|.|+=|..++ +...+...++.||.|.+|-+.- +.-|+|.|.+..+|-.|+.+++. ...|..+.++|-.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 455678887655443 3344566678999999887643 35899999999999999999865 6668888888743
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.86 E-value=0.026 Score=39.06 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=53.4
Q ss_pred CCCCeEEEcCCCcccCH-HHHHHHHHHhhccc-CCeEEEEeCCCCC-ceeEEEEEecCHHHHHHHHHHHcCCccC---Cc
Q 025982 13 SPNNTIYINNLNEKVKI-DQLKQSLHAVFKQF-GTILEILAFKTLK-HKGQAWLVFKDVASATAAVEKMQGFPFY---DK 86 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~-~~l~~~l~~~F~~~-G~v~~i~~~~~~~-~kg~afV~F~~~e~A~~a~~~l~~~~~~---g~ 86 (245)
..+..|.+--.|+.++. ++ |..+.+.+ ..|..+++.+++. ++--+++.|.+.++|......+||..|. ..
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~----l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE 85 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDF----LLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPE 85 (110)
T ss_pred CCCceEEEEEeCcccccHHH----HHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCc
Confidence 33445555555555555 55 43444444 4566777777765 6667889999999999999999998887 34
Q ss_pred eEEEEEcc
Q 025982 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.++|-|..
T Consensus 86 ~ChvvfV~ 93 (110)
T PF07576_consen 86 TCHVVFVK 93 (110)
T ss_pred eeEEEEEE
Confidence 56666643
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.85 E-value=0.00089 Score=52.36 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=46.3
Q ss_pred ccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025982 42 QFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 42 ~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
.||.|.++.+. ..-...|.++|.|...++|.+|++.||+-.|.|++|+.+++.-
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 88999887333 3345789999999999999999999999999999999999753
No 180
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.82 E-value=0.0016 Score=53.86 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=57.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
+|.|-||.++.+.++++.+|...|.|..+.|+++- .-.|||.|.|...+..|- +|.++.|-++.|.|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEE
Confidence 79999999999999999999999999999999832 248999999988777665 688888887777664
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.80 E-value=0.0015 Score=56.89 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=64.8
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcc-cCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC--
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQ-FGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY-- 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~-~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~-- 84 (245)
+..-.++++.|||.||-...|.-+ |..++.. .|.|.+.|+.+ -|.-|||.|.+.++|.....+|||+.|-
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQ----LkelL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQ----LKELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCccceEeeecccccchHHH----HHHHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 334567799999999999999999 4466664 45666665543 4678999999999999999999998885
Q ss_pred -CceEEEEEcccc
Q 025982 85 -DKPMRIQYAKTK 96 (245)
Q Consensus 85 -g~~i~v~~~~~~ 96 (245)
++.|.+.|....
T Consensus 510 NPK~L~adf~~~d 522 (718)
T KOG2416|consen 510 NPKHLIADFVRAD 522 (718)
T ss_pred CCceeEeeecchh
Confidence 568888887543
No 182
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.60 E-value=0.0083 Score=47.04 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=57.4
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE--EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC----CceEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY----DKPMR 89 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~----g~~i~ 89 (245)
..|||.||+..++.+. +.+-|+.||+|.. +.....++..+-++|.|.+.-.|.+|....+.--|. +++.-
T Consensus 32 a~l~V~nl~~~~sndl----l~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~ 107 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDL----LEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVG 107 (275)
T ss_pred ceEEEEecchhhhhHH----HHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccC
Confidence 6799999999999999 7799999999975 344455677789999999999999999987543333 44554
Q ss_pred EEE
Q 025982 90 IQY 92 (245)
Q Consensus 90 v~~ 92 (245)
|..
T Consensus 108 VeP 110 (275)
T KOG0115|consen 108 VEP 110 (275)
T ss_pred CCh
Confidence 443
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.60 E-value=0.017 Score=35.39 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=42.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccC---CCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHh
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQF---PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~---G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l 228 (245)
.|+|++++ .++-+||+.+|..| ....+|.-+.+. -|-|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 49999986 57788999999988 124667777775 5999999999999999865
No 184
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0083 Score=51.55 Aligned_cols=66 Identities=18% Similarity=0.357 Sum_probs=54.7
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhc-ccCCeEEEEeCCC---CCceeEEEEEecCHHHHHHHHHH
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFK-QFGTILEILAFKT---LKHKGQAWLVFKDVASATAAVEK 77 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~-~~G~v~~i~~~~~---~~~kg~afV~F~~~e~A~~a~~~ 77 (245)
......+.+||||++||..++-++ |..+|+ -||.|..+-+..+ +-.+|-|=|.|++..+=.+|+++
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~e----LA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEE----LAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHH----HHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 445677899999999999999999 667777 6899988755554 34679999999999999999984
No 185
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.41 E-value=0.012 Score=44.66 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=46.4
Q ss_pred CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhC--CCeeCCeEeEEEEec
Q 025982 183 TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ--SLKIGQQQLLITYAK 244 (245)
Q Consensus 183 ~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~i~v~~ak 244 (245)
-..+.|+.+|..|+.+..+...+.= +-.+|.|.+.++|..|...|+ +..+.|+.+++-|+.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3457899999999998777777764 369999999999999999999 999999999999874
No 186
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.39 E-value=0.004 Score=52.17 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=54.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCe--eEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCC-eeCCeEeEEEEe
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGF--KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL-KIGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v--~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-~~~g~~i~v~~a 243 (245)
.+|++||.+.++..||..+|... .+ ..-.++ +.||+||.+.+...|..|.+.++|. .+.|+++.+.++
T Consensus 3 klyignL~p~~~psdl~svfg~a-k~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccc-cCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 48999999999999999999753 11 111112 3589999999999999999999995 477999888764
No 187
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.33 E-value=0.006 Score=55.37 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=60.8
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC--CeEeEEEEec
Q 025982 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITYAK 244 (245)
Q Consensus 174 l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v~~ak 244 (245)
..+.|.+-..+-..|..+|+.||.|.+.+..++- ..|.|+|...+.|..|+.+++|.... |-+.+|.|||
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc-cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4455555666778899999999999999988776 58999999999999999999998876 8899999987
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.30 E-value=0.0077 Score=45.55 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=48.6
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcc-cCCe---EEEE--eCC---CCCceeEEEEEecCHHHHHHHHHHHcCCc
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQ-FGTI---LEIL--AFK---TLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~-~G~v---~~i~--~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~ 82 (245)
.....+|.|++||+..|+++ +++..+. ++.- ..+. ... ......-|||.|.+.+++......++|..
T Consensus 4 ~~~~~KvVIR~LPP~Lteee----F~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEE----FWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp -----EEEEEEE-TTS-HHH----HCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred cccCceEEEeCCCCCCCHHH----HHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 34567999999999999999 5565555 4544 2232 111 11123579999999999999999999977
Q ss_pred cCC---c--eEEEEEccc
Q 025982 83 FYD---K--PMRIQYAKT 95 (245)
Q Consensus 83 ~~g---~--~i~v~~~~~ 95 (245)
|.+ . ...|++|.-
T Consensus 80 F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 80 FVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp EE-TTS-EEEEEEEE-SS
T ss_pred EECCCCCCcceeEEEcch
Confidence 752 2 666777654
No 189
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.29 E-value=0.02 Score=36.68 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=39.3
Q ss_pred EEEeCCC--CCCCHHHHHHHhccCCCe-----eEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 174 LFVQNVP--HDTTPMALQMFFSQFPGF-----KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 174 l~v~nl~--~~~~~~~L~~~f~~~G~v-----~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+|| |+. ..++..+|..++...+.| -.|.+.. .|+||+-.. +.|..+++.|++..+.|++|.|+.|
T Consensus 3 l~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 3 LFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD---NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S---S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee---eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 444 554 678888998888877555 3455542 589999876 5889999999999999999999876
No 190
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.29 E-value=0.014 Score=46.64 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHhhcccCCeEEEEeCCCCC----ceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025982 28 KIDQLKQSLHAVFKQFGTILEILAFKTLK----HKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 28 ~~~~l~~~l~~~F~~~G~v~~i~~~~~~~----~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
-+++|...+..-++.||.|..|.+..... -.---||+|+..++|.+|+-.|||..|.||.+.-.|..-
T Consensus 295 vd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 295 VDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred ccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 34566666778889999998875543211 112579999999999999999999999999998887643
No 191
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.24 E-value=0.0068 Score=49.56 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=58.6
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.-++||+||--.+|++||.+.|...-- ..+.+| ..+.+|.+||||++...+....++-++.|-...++|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~--~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGL--AQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhH--HHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 457899999999999997766654421 134444 344588999999999999999999999999999998854443
Q ss_pred E
Q 025982 92 Y 92 (245)
Q Consensus 92 ~ 92 (245)
.
T Consensus 158 ~ 158 (498)
T KOG4849|consen 158 S 158 (498)
T ss_pred c
Confidence 3
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.23 E-value=0.094 Score=36.31 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=49.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPG-FKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~-v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
...+.+-..|..++.++|..+.+.+-. |..++++++. +-.++++|.+.++|..-...+||+.|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344555455566777788777766644 6788888865 458999999999999999999999886
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.04 E-value=0.072 Score=32.63 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=37.4
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE-EeCCCCCceeEEEEEecCHHHHHHHHHHH
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFKTLKHKGQAWLVFKDVASATAAVEKM 78 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i-~~~~~~~~kg~afV~F~~~e~A~~a~~~l 78 (245)
..|+|+|+.. ++-++|+.++.++|..-++. .| ++.. ..|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~-~IEWIdD-----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPF-RIEWIDD-----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCc-eEEEecC-----CcEEEEECCHHHHHHHHHcC
Confidence 4799999966 56667666665554322433 33 2332 25779999999999999754
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.79 E-value=0.041 Score=46.69 Aligned_cols=65 Identities=17% Similarity=0.336 Sum_probs=57.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G-~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
+++.|.|-.+|..++-.||..|+..+- .|.+++++++. +-..++.|.+.++|....+.+||..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 378899999999999999999998765 47999999864 568999999999999999999998887
No 195
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.69 E-value=0.089 Score=32.74 Aligned_cols=56 Identities=11% Similarity=0.250 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEE
Q 025982 181 HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 181 ~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 240 (245)
..++-++++..+..|+- . .+..+++|| +|.|.+..+|.+.....+|+.+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~--~I~~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-D--RIRDDRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-c--eEEecCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999853 3 345566554 78999999999999999999999888765
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.54 E-value=0.027 Score=42.59 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=46.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhcc-CCCe---eEEEEecCC-------CeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQ-FPGF---KEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~-~G~v---~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
...|.|++||+.+|+++++..++. ++.. .++....+. ..-|+|.|.+.++.......++|..|-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 457999999999999999998887 6665 233211211 357999999999999999999997765
No 197
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.53 E-value=0.026 Score=50.10 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=60.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 240 (245)
++..++||+|+...+..+-++.+...+|.|.+++... |||+.|..+.-+..|+..++-..++|..+.+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 5667899999999999999999999999998777653 9999999999999999999888888877654
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.40 E-value=0.082 Score=44.95 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhccc-CCeEEEEeCCCCC-ceeEEEEEecCHHHHHHHHHHHcCCccCC---
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-GTILEILAFKTLK-HKGQAWLVFKDVASATAAVEKMQGFPFYD--- 85 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i~~~~~~~-~kg~afV~F~~~e~A~~a~~~l~~~~~~g--- 85 (245)
...+++.|.|-.+|..++..||. .|...+ -.|..|++.++|. ++-..+|.|.+.++|..+++.+||..|..
T Consensus 70 ~~~~~~mLcilaVP~~mt~~Dll----~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~ 145 (493)
T KOG0804|consen 70 NASSSTMLCILAVPAYMTSHDLL----RFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEP 145 (493)
T ss_pred cCCCCcEEEEEeccccccHHHHH----HHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCc
Confidence 34448999999999999999955 444333 4566777666664 55678899999999999999999988872
Q ss_pred ceEEEEEc
Q 025982 86 KPMRIQYA 93 (245)
Q Consensus 86 ~~i~v~~~ 93 (245)
..+++-|.
T Consensus 146 e~Chll~V 153 (493)
T KOG0804|consen 146 EVCHLLYV 153 (493)
T ss_pred cceeEEEE
Confidence 35555554
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.19 E-value=0.0078 Score=49.10 Aligned_cols=82 Identities=17% Similarity=0.331 Sum_probs=62.6
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCC--C----ceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL--K----HKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~--~----~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.+-+||-+|+.....+++.+.- +.|.+||.|..|...++- . ..-.++|.|...++|..|+...+|....|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~-eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERT-EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCc-ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4568999999887666543222 688999999998766532 1 01148999999999999999999999999998
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+..+...+-
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 888866544
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=0.2 Score=40.50 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc-eEEEEEc
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK-PMRIQYA 93 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~-~i~v~~~ 93 (245)
..=|-|=|+|+....- |..+|++||.|.......+ -++-+|.|.+.-+|++|+. .||..|.|. .|-|...
T Consensus 197 D~WVTVfGFppg~~s~-----vL~~F~~cG~Vvkhv~~~n---gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSI-----VLNLFSRCGEVVKHVTPSN---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccchhH-----HHHHHHhhCeeeeeecCCC---CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 4556677888776543 4489999999988655444 3699999999999999999 799999877 6667665
Q ss_pred cccch
Q 025982 94 KTKSD 98 (245)
Q Consensus 94 ~~~~~ 98 (245)
..+.-
T Consensus 268 tDksv 272 (350)
T KOG4285|consen 268 TDKSV 272 (350)
T ss_pred CCHHH
Confidence 55443
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.48 E-value=0.09 Score=40.01 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHc--CCccCCceEEEEEccc
Q 025982 31 QLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ--GFPFYDKPMRIQYAKT 95 (245)
Q Consensus 31 ~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~--~~~~~g~~i~v~~~~~ 95 (245)
++++.|+++|..++.+..+...++- +-..|.|.+.+.|.+|...++ +..+.|..++|-|+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF---rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF---RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT---TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC---CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3445588999999988887655432 357899999999999999999 8999999999999843
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.24 E-value=0.098 Score=45.66 Aligned_cols=69 Identities=12% Similarity=0.274 Sum_probs=55.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcc--CCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC--CeeCCeEeEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQ--FPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLI 240 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~--~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~i~v 240 (245)
..+.++++-||..+..|+++.+|.. +-.++++.+-.+. -=||+|++..+|+.|...|.. ..|-||+|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578999999999999999999984 4467778777664 468999999999999988865 4566777653
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.16 E-value=0.24 Score=30.79 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=42.0
Q ss_pred ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 26 KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
.++-++|+ ..+..|+ -..|+..++| =||.|.+.++|+++....+|..+.+.++.+
T Consensus 11 ~~~v~d~K----~~Lr~y~-~~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFK----KRLRKYR-WDRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHH----HHHhcCC-cceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 34667754 6667775 4467777663 579999999999999999999888877765
No 204
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.90 E-value=0.14 Score=42.09 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFP--GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G--~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
.-.+||+||---+|++||.......| .+.+++++-++ ||||+|...+.......++.|-.+.++|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 34699999998899999988887776 35777777653 899999999988888999988888888654
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.55 E-value=0.17 Score=40.81 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=45.2
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 174 l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
+-|-++|..-. .-|..+|++||.|.+..... +-.+-.|.|.+.-+|.+||. -||+.|+|..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~-ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS-NGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecCC-CCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 44555553332 34678899999987665543 33599999999999999998 5899998654
No 206
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.16 E-value=0.074 Score=45.46 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~-~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
...+.|-+.-.|.. -+..+|..+|..||.|..|.+-... .-|.|+|.+..+|-.|-. .++..|.++.|+|-|=
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34455666666643 4678999999999999988876653 579999999999977775 6899999999999873
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.00 E-value=0.08 Score=48.46 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=57.5
Q ss_pred EEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC--CceEEEEEccc
Q 025982 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYAKT 95 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~--g~~i~v~~~~~ 95 (245)
.++.|.+-..+... |..+|+.||.|.+.|..++ -..|.|+|.+.+.|..|..+++|.+.. |-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSss----L~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSS----LATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHH----HHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 33444444555556 7789999999999987664 357999999999999999999997665 88999999875
Q ss_pred cc
Q 025982 96 KS 97 (245)
Q Consensus 96 ~~ 97 (245)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 43
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=1.1 Score=39.52 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=59.8
Q ss_pred CCCcEEEEeCCC-CCCCHHHHHHHhccC----CCeeEEEEecCC-------------C----------------------
Q 025982 169 PPNNILFVQNVP-HDTTPMALQMFFSQF----PGFKEVRMVEAK-------------P---------------------- 208 (245)
Q Consensus 169 ~~~~~l~v~nl~-~~~~~~~L~~~f~~~----G~v~~v~~~~~~-------------~---------------------- 208 (245)
-++.+|-|-||+ ..+..+||..+|+.| |.|.+|.|++.. +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 356789999999 899999999888766 579999999721 1
Q ss_pred -----------------eEEEEEEcCHHHHHHHHHHhCCCeeC--CeEeEEE
Q 025982 209 -----------------GIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLIT 241 (245)
Q Consensus 209 -----------------g~afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v~ 241 (245)
-||.|+|.+.+.|......++|..|. +..|-+-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 28999999999999999999999998 4444443
No 209
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.71 E-value=6.3 Score=32.09 Aligned_cols=82 Identities=15% Similarity=0.309 Sum_probs=60.9
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCC----------CceeEEEEEecCHHHHHHHHH--
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL----------KHKGQAWLVFKDVASATAAVE-- 76 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~----------~~kg~afV~F~~~e~A~~a~~-- 76 (245)
+.+.-.+|.|...|+..+++--. +...|-.||+|++|.+..+. +......+.|-+.+.|-..+.
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~----Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnv 84 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHS----FLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNV 84 (309)
T ss_pred CCccceeHHHHHhhccccccHHH----HHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHH
Confidence 45667789999999999988877 66899999999999766543 234578899999998877653
Q ss_pred --HHcC--CccCCceEEEEEcc
Q 025982 77 --KMQG--FPFYDKPMRIQYAK 94 (245)
Q Consensus 77 --~l~~--~~~~g~~i~v~~~~ 94 (245)
+|.. ..+....|.+.|..
T Consensus 85 LQrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 85 LQRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHHHHhcCCcceeEEEEE
Confidence 2322 34456677887764
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.18 E-value=0.066 Score=43.83 Aligned_cols=72 Identities=14% Similarity=0.319 Sum_probs=55.8
Q ss_pred cEEEEeCCCCCCCHHHH---HHHhccCCCeeEEEEecCC--------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEE
Q 025982 172 NILFVQNVPHDTTPMAL---QMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L---~~~f~~~G~v~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 240 (245)
..+|+-+|+..+..+++ ...|++||.|..|....+. .--++|.|...++|..|+...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 44667777765554444 3788999999988877643 114899999999999999999999999998877
Q ss_pred EEe
Q 025982 241 TYA 243 (245)
Q Consensus 241 ~~a 243 (245)
+|+
T Consensus 158 ~~g 160 (327)
T KOG2068|consen 158 SLG 160 (327)
T ss_pred hhC
Confidence 664
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.97 E-value=2.1 Score=27.22 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=31.0
Q ss_pred ccCHHHHHHHHHHhhccc-CCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 26 KVKIDQLKQSLHAVFKQF-GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~-G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
.++..+|..+|.+...-- ..|-.|.+.. .|+||+-.. +.|..++..|++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD-----NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S-----S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee-----eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 456667443333222111 1445566654 489998874 4889999999999999999999864
No 212
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.03 E-value=0.32 Score=41.79 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=57.3
Q ss_pred CeEEEcCCCcccC-HHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025982 16 NTIYINNLNEKVK-IDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 16 ~~l~V~nLp~~~~-~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
+.|-+.-.|+..+ ..+ |...|-+||.|..|.+... .--|.|.|.+-.+|-+|.. .++..|+|+.|+|-|..
T Consensus 373 s~l~lek~~~glnt~a~----ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIAD----LNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred chhhhhccCCCCchHhh----hhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 4445555555543 345 7799999999999866543 3468999999999999988 79999999999999987
Q ss_pred ccc
Q 025982 95 TKS 97 (245)
Q Consensus 95 ~~~ 97 (245)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 643
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.77 E-value=0.46 Score=42.53 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
+..++.-+|||+|+...+..+- +......+|-|.++... -|+|+.|....-+..|+..++...+.|..+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~----~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEF----WKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred cCCCCCceeEecchhhhhhHHH----HHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 3466788999999999999888 45777778888665322 2999999999999999998998888887665
Q ss_pred EEE
Q 025982 90 IQY 92 (245)
Q Consensus 90 v~~ 92 (245)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 544
No 214
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.69 E-value=1.7 Score=38.40 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=49.6
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcc--cCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC--CccCCceE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQ--FGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG--FPFYDKPM 88 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~--~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~--~~~~g~~i 88 (245)
.+.|.++-||..+-+++ +..+|+. +-++.+|.+-.+ .-=||.|++..||+.|+..|.. ..|.|+.|
T Consensus 175 RcIvilREIpettp~e~----Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEV----VKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHH----HHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 56788899999999999 5588875 567778755432 2358999999999999987753 55666644
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.36 E-value=0.78 Score=30.30 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=19.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHh
Q 025982 170 PNNILFVQNVPHDTTPMALQMFF 192 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f 192 (245)
...++.|.|||....+++|++..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 56779999999999999998764
No 216
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=83.21 E-value=3.2 Score=33.74 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=56.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC------------CeEEEEEEcCHHHHHHH----HHHhCC--Ce
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------------PGIAFVEYGDEMQATVA----MQSLQS--LK 232 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~------------~g~afV~f~~~~~A~~A----l~~l~g--~~ 232 (245)
++.|.+.|+...++-......|-+||.|.+|+++.+. .--..+.|-+.+.+... ++.|+. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999999999854 34788899888776543 344443 45
Q ss_pred eCCeEeEEEEe
Q 025982 233 IGQQQLLITYA 243 (245)
Q Consensus 233 ~~g~~i~v~~a 243 (245)
+....|.++|.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 66777877775
No 217
>PF14893 PNMA: PNMA
Probab=83.10 E-value=1.2 Score=37.32 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=40.3
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE--EeCCCCCceeEEEEEecC
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI--LAFKTLKHKGQAWLVFKD 67 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i--~~~~~~~~kg~afV~F~~ 67 (245)
+-+.|.|.|||.++++++|.+.|..-+...|...-. .+.+.-. ...|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cceeeeeccc
Confidence 456799999999999999999999988888866443 3333322 4479999963
No 218
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=78.21 E-value=9.6 Score=24.96 Aligned_cols=56 Identities=11% Similarity=0.195 Sum_probs=41.6
Q ss_pred EEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHH
Q 025982 19 YINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 19 ~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~ 76 (245)
|.=-.+..++..+|++.++.+|.- .|..|.........-=|||.+..-++|...-.
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~V--kV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDV--KVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCC--ceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 333478899999999999999975 67777544433333469999998888877654
No 219
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=76.63 E-value=12 Score=25.95 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=32.4
Q ss_pred ccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHH
Q 025982 26 KVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a 74 (245)
.++.+||++.|.+++..--.+..+...+ .|++.|||.| |++.|.|.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 5688999999999988643333332222 5678889976 6777666543
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=74.89 E-value=8.4 Score=31.23 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=36.4
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHH
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVA 69 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e 69 (245)
+......+-|+++|||.+..-.||+..|+..-.. + .+|.. .| ..|-||.+|.+..
T Consensus 324 g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~--p-m~isw--kg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 324 GVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECT--P-MSISW--KG-HFGKCFLHFGNRK 378 (396)
T ss_pred cccCccccceeeccCccccchHHHHHHHHhcCCC--c-eeEee--ec-CCcceeEecCCcc
Confidence 3344556789999999999999988777654221 1 22321 23 3567999998754
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=73.19 E-value=4.6 Score=29.38 Aligned_cols=111 Identities=13% Similarity=0.035 Sum_probs=73.1
Q ss_pred ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccccchHhhhcCC
Q 025982 26 KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSDIIAKADG 105 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~ 105 (245)
..+-..|...+.......|.+.-..+ . .++..+.|.+.+++.+++. .....+.|..+.+....+...... .
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-~----~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~-~-- 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-G----DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE-V-- 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-C----CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc-c--
Confidence 35677877778887777776643333 2 4789999999999999988 455667777776655432211000 0
Q ss_pred CcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCC-CCCC
Q 025982 106 TFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVP-HDTT 184 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~-~~~~ 184 (245)
... ...-=+-|.||| .-.+
T Consensus 99 ----------------------------------------------------------~~~--~~~vWVri~glP~~~~~ 118 (153)
T PF14111_consen 99 ----------------------------------------------------------KFE--HIPVWVRIYGLPLHLWS 118 (153)
T ss_pred ----------------------------------------------------------cee--ccchhhhhccCCHHHhh
Confidence 000 001126677999 4578
Q ss_pred HHHHHHHhccCCCeeEEEEec
Q 025982 185 PMALQMFFSQFPGFKEVRMVE 205 (245)
Q Consensus 185 ~~~L~~~f~~~G~v~~v~~~~ 205 (245)
++-+..+-+..|.+..+....
T Consensus 119 ~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 119 EEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hHHHHHHHHhcCCeEEEEcCC
Confidence 888999999999998877654
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=69.08 E-value=25 Score=22.58 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=40.9
Q ss_pred EEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHH
Q 025982 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~ 76 (245)
-|+=.++.+++..+|+++++.+|.- .|..|.........-=|||.+..-+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~V--kV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDV--KVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCC--ceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3444578999999999999999975 67777544322223369999988887776644
No 223
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.75 E-value=22 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcccCCeEEEEeC
Q 025982 29 IDQLKQSLHAVFKQFGTILEILAF 52 (245)
Q Consensus 29 ~~~l~~~l~~~F~~~G~v~~i~~~ 52 (245)
.++|.+.|+++|+..|.|..+.+.
T Consensus 4 re~i~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 4 REEITAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEEc
Confidence 456777799999999999776444
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.05 E-value=68 Score=29.00 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCCCCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeCCC-------------CC---------------------
Q 025982 12 ISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKT-------------LK--------------------- 56 (245)
Q Consensus 12 ~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-------------~~--------------------- 56 (245)
..++++|=|=||.= .+.-.+|-..|-.+...-|.|++|.+.++ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999984 45667754444333333358888754421 21
Q ss_pred ----------------ceeEEEEEecCHHHHHHHHHHHcCCccC--CceEEEEEcc
Q 025982 57 ----------------HKGQAWLVFKDVASATAAVEKMQGFPFY--DKPMRIQYAK 94 (245)
Q Consensus 57 ----------------~kg~afV~F~~~e~A~~a~~~l~~~~~~--g~~i~v~~~~ 94 (245)
.--||.|+|.+++.|.+.+..++|..|. +..+-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1138999999999999999999999997 5577777753
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.55 E-value=15 Score=31.33 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=47.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEe
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v-~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 238 (245)
-++|=|.++|...--+||...|+.|++- .+|+-+.+ ..+|-.|.+...|..||- +-..++.-|+|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd--thalaVFss~~~AaeaLt-~kh~~lKiRpL 456 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD--THALAVFSSVNRAAEALT-LKHDWLKIRPL 456 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec--ceeEEeecchHHHHHHhh-ccCceEEeeeh
Confidence 3578899999888888888899988762 44444444 379999999999999997 44444444443
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.35 E-value=9.2 Score=26.76 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=24.4
Q ss_pred EEEEeCCCCC---------CCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHH
Q 025982 173 ILFVQNVPHD---------TTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQ 220 (245)
Q Consensus 173 ~l~v~nl~~~---------~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~ 220 (245)
+.+|-|++.. ++.+.|.+.|+.|..++ ++...+. +|+++|+|..--.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChH
Confidence 3667777532 45678999999998765 3333333 6899999976444
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.30 E-value=6.8 Score=29.54 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=47.4
Q ss_pred EEEeCCCCCC--CHH---HHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCe-EeEEEEe
Q 025982 174 LFVQNVPHDT--TPM---ALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLITYA 243 (245)
Q Consensus 174 l~v~nl~~~~--~~~---~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~i~v~~a 243 (245)
+++-+++..+ +.+ .-.++|..|....-..+++.. +..-|.|.+++.|..|...++++.|.|+ .++.=||
T Consensus 13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf-rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 13 IIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF-RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred eeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh-ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 6666666433 222 334566665555444455554 4778999999999999999999999988 6665555
No 228
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=63.23 E-value=1.8 Score=28.56 Aligned_cols=22 Identities=9% Similarity=0.299 Sum_probs=18.3
Q ss_pred CCCCCeEEEcCCCcccCHHHHH
Q 025982 12 ISPNNTIYINNLNEKVKIDQLK 33 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~ 33 (245)
....++|-|+|||...++++|+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred cccCCEEEEeCCCCCCChhhhe
Confidence 3456899999999999999854
No 229
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=61.52 E-value=48 Score=22.47 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=30.2
Q ss_pred ccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHH
Q 025982 26 KVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a 74 (245)
..+..+|++.|..++..--...-|.-.+ .|.+.|||.| |.+.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4577899999998888543444443333 3456677755 5666666554
No 230
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=61.09 E-value=58 Score=28.03 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=29.4
Q ss_pred CCCcEEEEeCCC-CCCCHHHHHHHhccC----CCeeEEEEec
Q 025982 169 PPNNILFVQNVP-HDTTPMALQMFFSQF----PGFKEVRMVE 205 (245)
Q Consensus 169 ~~~~~l~v~nl~-~~~~~~~L~~~f~~~----G~v~~v~~~~ 205 (245)
.++..|-|-||+ ..+.-.+|..+|+.| |.+..|.|++
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 456679999998 888889998888755 5678888876
No 231
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=59.62 E-value=4.9 Score=30.19 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=43.8
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCC----CceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTL----KHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~----~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+++|.. |.+...++ |.++-+ |.+..|..++.+ ..+|.-||.|.+.++|...+. -+...+..+.|.
T Consensus 111 ~r~v~~K--~td~ql~~----l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el~ 180 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDD----LNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAETELK 180 (205)
T ss_pred Hhhhhcc--CCHHHHHH----HHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccchHHH
Confidence 4666776 55555555 334444 788888666533 467999999999999999887 454444444443
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.43 E-value=15 Score=25.65 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=24.1
Q ss_pred EEEcCCCccc---------CHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHH-HHHHHH
Q 025982 18 IYINNLNEKV---------KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVAS-ATAAVE 76 (245)
Q Consensus 18 l~V~nLp~~~---------~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~-A~~a~~ 76 (245)
+.|-|++... +.++ |.+.|..|.++....+....-..|++.|+|.+.-. =..|+.
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~----l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEE----LLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEE----EE-TTS-EE---SHH----HHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEcCccccCCCCceeccCHHH----HHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4555665433 4456 44555657665433222222457899999976544 344444
No 233
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=55.17 E-value=72 Score=22.89 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=29.5
Q ss_pred ccCHHHHHHHHHHhhc-ccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHH
Q 025982 26 KVKIDQLKQSLHAVFK-QFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 26 ~~~~~~l~~~l~~~F~-~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a 74 (245)
..+..||++.|..++. .-....-|.-.+ .|.+.|||.| |.+.+.|.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4577899988988888 443443443222 3556777765 5566655543
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=53.48 E-value=66 Score=26.30 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=35.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEecCCCeEEEEEEcCH
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAKPGIAFVEYGDE 218 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v-~~v~~~~~~~g~afV~f~~~ 218 (245)
..+-+++.||+...--.||+..+..-|.+ .++.- .+..|-||+.|-|.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCc
Confidence 34569999999999999999999887765 33222 23347899999653
No 235
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=50.24 E-value=23 Score=30.00 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=47.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEecCC-------CeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPG-FKEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~-v~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
.+.|.+||...+++++..-..++-. +.+..+.+.. -+.++|.|.++.+...-..-++|..|-
T Consensus 9 Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 9 KVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 4788999999999999888887654 5555565422 357999999999988888888887654
No 236
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=43.65 E-value=40 Score=25.55 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=49.9
Q ss_pred eEEEcCCCcccCH-HHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc-eEEEEEcc
Q 025982 17 TIYINNLNEKVKI-DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK-PMRIQYAK 94 (245)
Q Consensus 17 ~l~V~nLp~~~~~-~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~-~i~v~~~~ 94 (245)
.+.+.+++..+-. .+.+.....+|.+|....-..+. ++.+..-|.|.+.+.|..|...+++..|.|. .++.-++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 4666667655422 22233355677765544333222 2345666999999999999999999999988 77776765
Q ss_pred c
Q 025982 95 T 95 (245)
Q Consensus 95 ~ 95 (245)
+
T Consensus 89 ~ 89 (193)
T KOG4019|consen 89 P 89 (193)
T ss_pred C
Confidence 4
No 237
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=42.90 E-value=39 Score=30.54 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=16.9
Q ss_pred CCeEEEcCCCcccCHHHHHHHH
Q 025982 15 NNTIYINNLNEKVKIDQLKQSL 36 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l 36 (245)
+..||+.||+.+..++.-.+.|
T Consensus 301 ~~evY~nGlSTSlP~dVQ~~~i 322 (621)
T COG0445 301 TDEVYPNGLSTSLPEDVQEQII 322 (621)
T ss_pred CceEecCcccccCCHHHHHHHH
Confidence 4679999999999988744334
No 238
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.39 E-value=45 Score=20.87 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=22.5
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 025982 209 GIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 209 g~afV~f~~~~~A~~Al~~l~g~~~~g~ 236 (245)
.+.++.|.+..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999999998876655433
No 239
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=40.06 E-value=1.1e+02 Score=20.06 Aligned_cols=70 Identities=6% Similarity=0.010 Sum_probs=48.6
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccC--CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG--TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
--|++..++..++-++|.+.++++|+..- +..--+....|. -|.|++.++-..|++.+.-..=.+-.|+|
T Consensus 9 gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~~~n~~~~l~ihv 80 (83)
T cd06404 9 GDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGD-----PCTISSQMELEEAFRLYELNKDSELNIHV 80 (83)
T ss_pred CcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC-----ceeecCHHHHHHHHHHHHhcCcccEEEEe
Confidence 35889999999999999999999998763 333235555443 37889999999998855433222334544
No 240
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=38.45 E-value=1.3e+02 Score=22.04 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHhhcccC-CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC
Q 025982 28 KIDQLKQSLHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 28 ~~~~l~~~l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~ 80 (245)
.|+.++..|....+..| .|.+|.... ..+||.||+....+++..++..+.+
T Consensus 17 ~E~~V~~~L~~~~~~~~~~i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 17 QERNVALMLAMRAKKENLPIYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 46777777777765333 266665543 3689999999988888888876655
No 241
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.39 E-value=56 Score=20.45 Aligned_cols=29 Identities=10% Similarity=-0.014 Sum_probs=23.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 59 GQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 59 g~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
.+.+|.|.+..+|.+|-+.|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 36899999999999999988876554433
No 242
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.87 E-value=42 Score=28.52 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=44.6
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccC-CeEEEEeCC-----CCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFK-----TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~-----~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
.-..|-|.+||+..++.++...| ..+- .+....+.. .....+.|||.|.+.++.......++|..|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi----~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQI----NPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhc----CCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 34678999999999999954333 2221 121122221 1112468999999999999998888887764
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.57 E-value=55 Score=27.18 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=26.3
Q ss_pred EEEEecCHHHHHHHHHHHcCCccCCceEEEEEccccch
Q 025982 61 AWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 61 afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~~~~ 98 (245)
|||.|++..+|..|.+.+... .++.+++..|....+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCccc
Confidence 799999999999999965543 235557777655443
No 244
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.22 E-value=95 Score=26.74 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=40.2
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCC--eEEEEeCCCCCceeEEEEEecCHHHHHHHHHH
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGT--ILEILAFKTLKHKGQAWLVFKDVASATAAVEK 77 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~--v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~ 77 (245)
-.+|-|.++|....-+| |...|+.|+. -.-.|+..+ .||..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteD----ll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTED----LLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHH----HHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 46889999998877777 5578888753 222244433 799999999999999984
No 245
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.09 E-value=81 Score=20.43 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=23.8
Q ss_pred CeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC
Q 025982 197 GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 197 ~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g 230 (245)
.|.++...++-+||-||+=.++.+...|++.+-+
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 4566655555689999999999999999876654
No 246
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.69 E-value=60 Score=26.38 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=27.1
Q ss_pred CCCCCCCCeEEEcCCCccc------------CHHHHHHHHHHhhcccCCeEEE
Q 025982 9 GNEISPNNTIYINNLNEKV------------KIDQLKQSLHAVFKQFGTILEI 49 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~------------~~~~l~~~l~~~F~~~G~v~~i 49 (245)
+.+...-.+||+.+||..+ +++- |+..|+.||.|..|
T Consensus 143 mkpgerpdti~la~ip~kwf~lkedg~~dlpse~r----lr~a~eafg~ir~v 191 (445)
T KOG2891|consen 143 MKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDR----LRKAFEAFGEIRNV 191 (445)
T ss_pred cCCCCCCCceeecCCcceeeeecccccccCChHHH----HHHHHHHhccceec
Confidence 3444455689999999654 4444 77999999999875
No 247
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.97 E-value=1e+02 Score=18.12 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=41.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCH----HHHHHHHHH
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDE----MQATVAMQS 227 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~----~~A~~Al~~ 227 (245)
|+.|.||........+...+...-.|.++.+-... +.+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-CEEEEEEecCCCCHHHHHHHHHH
Confidence 47788888888888899999888889888887765 5788888644 555566654
No 248
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.50 E-value=1e+02 Score=27.61 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=46.3
Q ss_pred EEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 19 YINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 19 ~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.||||+.-... .....|..+-+.||+|-.+++-. .-.|.-.+.+.|..++. -|+..|.+|+.
T Consensus 36 iIGnl~~l~~~-~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSL-PPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCC-chhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 56777654444 33444777888999999887632 34688899999999999 68888888875
No 249
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=33.17 E-value=1.7e+02 Score=22.59 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC-CccC--CceEEEEE
Q 025982 28 KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG-FPFY--DKPMRIQY 92 (245)
Q Consensus 28 ~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~-~~~~--g~~i~v~~ 92 (245)
+.++.+++|.++-.. + +.+..+|...|-+.+.+.+.++|..++..+-. ..|. +..+.|+-
T Consensus 25 ~~~~A~~~l~~~~~p---~--~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE 87 (194)
T PF01071_consen 25 DYEEALEYLEEQGYP---Y--VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEE 87 (194)
T ss_dssp SHHHHHHHHHHHSSS---E--EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE
T ss_pred CHHHHHHHHHhcCCC---c--eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEe
Confidence 556655555544332 2 34445566666667777999999999987643 3343 34565543
No 250
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=32.71 E-value=1.6e+02 Score=19.91 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC
Q 025982 31 QLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 31 ~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~ 80 (245)
++.+.|+-+-..-|.|..|......-..=.+-+...+..++..+++.++.
T Consensus 9 ~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 9 EIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 33334666667667888887665544344677888999999999998864
No 251
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.38 E-value=26 Score=30.00 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=46.7
Q ss_pred CCCCeEEEcCCCcccCHH----HHHHHHHHhhcc--cCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHH
Q 025982 13 SPNNTIYINNLNEKVKID----QLKQSLHAVFKQ--FGTILEILAFK---TLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~----~l~~~l~~~F~~--~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~ 76 (245)
...+.+|+.+.+.....+ +..+-+...|.. .+++..|+..+ +..++|..|++|...+.|+++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345678888888766655 111126688888 67888886665 44578899999999999999874
No 252
>PHA01632 hypothetical protein
Probab=29.77 E-value=56 Score=19.38 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=16.6
Q ss_pred EEEeCCCCCCCHHHHHHHhc
Q 025982 174 LFVQNVPHDTTPMALQMFFS 193 (245)
Q Consensus 174 l~v~nl~~~~~~~~L~~~f~ 193 (245)
+.|..+|...|+++|+.++.
T Consensus 19 ilieqvp~kpteeelrkvlp 38 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLP 38 (64)
T ss_pred EehhhcCCCCCHHHHHHHHH
Confidence 55678899999999997764
No 253
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=29.74 E-value=3.4e+02 Score=25.27 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=38.1
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCC--eEEEEeCCCCCceeEEE-EEecCHHHHHHHHHH
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGT--ILEILAFKTLKHKGQAW-LVFKDVASATAAVEK 77 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~--v~~i~~~~~~~~kg~af-V~F~~~e~A~~a~~~ 77 (245)
.++|.|+-||+.++.+.+.+.|.++-.. |. |..+++..+ ++..| |++.....+...+..
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~-~ki~I~~i~D~s~---~~v~i~i~l~~~~~~~~~~~~ 281 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARK-GKIKISSINDYTA---ENVEIEIKLPRGVYASEVIEA 281 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHc-CCCccceeEeCCC---CcEEEEEEECCCCCHHHHHHH
Confidence 4689999999999999998888777643 33 555555433 34444 445544445544443
No 254
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=29.11 E-value=1.7e+02 Score=19.08 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=26.6
Q ss_pred cccCHHHHHHHHHHhhcccCCeEEEEeC--CC--CCceeEEEEEecCHHHHHH
Q 025982 25 EKVKIDQLKQSLHAVFKQFGTILEILAF--KT--LKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~--~~~kg~afV~F~~~e~A~~ 73 (245)
+..+..||++.|..++..=....-|.-. .. +.+.|+|.| |.+.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 3456788998898888764333333222 23 345666655 556665543
No 255
>PHA03008 hypothetical protein; Provisional
Probab=28.49 E-value=1.1e+02 Score=23.62 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=34.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKP 208 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~ 208 (245)
-+..+||+|+..-....-+..+|.+|..+..|-++++..
T Consensus 20 ~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg~~ 58 (234)
T PHA03008 20 ICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPGDI 58 (234)
T ss_pred cccEEEEecccccccccHHHHHHhhccccceEEEccCCc
Confidence 456799999998888999999999999999999988653
No 256
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=27.78 E-value=2.5e+02 Score=20.58 Aligned_cols=52 Identities=8% Similarity=0.213 Sum_probs=35.9
Q ss_pred EEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHH
Q 025982 19 YINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 19 ~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a 74 (245)
|+=-++..++..+|++.++.+|.- .|..|... ..|. -=|||.+....+|...
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~V--kV~kVNTli~p~g~--KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDV--KVVKVNTLITPDGL--KKAYIRLSPDVDALDV 138 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCC--eeEEEEeEEcCCCc--eEEEEEECCCCcHHHH
Confidence 333478899999999999999975 57666433 2332 2599999776665543
No 257
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=27.64 E-value=1.2e+02 Score=22.31 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=26.0
Q ss_pred eeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC
Q 025982 198 FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 198 v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g 230 (245)
|.++.+...-+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 556665555589999999988888888887765
No 258
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=27.04 E-value=1.3e+02 Score=19.96 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=17.1
Q ss_pred eEEEEEecCHHHHHHHHHHHcC
Q 025982 59 GQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 59 g~afV~F~~~e~A~~a~~~l~~ 80 (245)
||-||++...++.-.++..+.+
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCC
Confidence 9999999876666777766655
No 259
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=26.79 E-value=1.8e+02 Score=19.23 Aligned_cols=31 Identities=6% Similarity=0.033 Sum_probs=22.7
Q ss_pred EEEEEcCHHHHHHHHHHhCCCeeC--CeEeEEE
Q 025982 211 AFVEYGDEMQATVAMQSLQSLKIG--QQQLLIT 241 (245)
Q Consensus 211 afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v~ 241 (245)
.++-|-+-.+++.||..++.+... |++|.|-
T Consensus 46 ~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I~ 78 (88)
T PF09162_consen 46 RAQFFVEDASTASALKDVSRKICDEDGFKISIF 78 (88)
T ss_dssp EEEEEESSHHHHHHHHTTTTTEEBTTSBEE--E
T ss_pred EEEEEeCCHHHHHHHHHCCCceECCCCCEEEEE
Confidence 567787778899999988876665 8887663
No 260
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.66 E-value=49 Score=26.23 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=26.1
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE 48 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~ 48 (245)
......++|+-|+|..++++.|+ .+.+..|-+..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lk----r~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLK----RFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHH----HHHHHhhhhhh
Confidence 35667899999999999999966 55566665554
No 261
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=26.61 E-value=2e+02 Score=19.10 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=23.8
Q ss_pred EEEcCCCcccCHHHHHHHHHHhhcccCCeEEEE
Q 025982 18 IYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL 50 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~ 50 (245)
.|+=.++..++..||+++|+.+|.- .|..|.
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~V--kV~~Vn 52 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGV--KVESVN 52 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCC--ceeEEE
Confidence 4444578899999999999999865 566663
No 262
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.57 E-value=59 Score=25.79 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=28.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVR 202 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~ 202 (245)
+...+||+-|+|..++++.|..+.+..|-+....
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3556799999999999999999999988654443
No 263
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=23.39 E-value=1.5e+02 Score=18.46 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHhccCC-CeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 186 MALQMFFSQFP-GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 186 ~~L~~~f~~~G-~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
++|.+-|...| .|..|.-+..+ -..-||+++...+... .++=..+++.+|.|+..+|
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 45667777777 46776655543 2477888876655332 3334578888999987664
No 264
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.25 E-value=1.3e+02 Score=24.72 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=34.8
Q ss_pred Cccc-CHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHH
Q 025982 24 NEKV-KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 24 p~~~-~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~ 76 (245)
+.|+ ++++++..+...-..||.| +|.+..-|.+. ..|.+..+.++....+.
T Consensus 69 ~~Dvs~~~~~~~~~~~~~~~fg~v-DvLVNNAG~~~-~~~~~~~~~~~~~~~md 120 (282)
T KOG1205|consen 69 QLDVSDEESVKKFVEWAIRHFGRV-DVLVNNAGISL-VGFLEDTDIEDVRNVMD 120 (282)
T ss_pred eCccCCHHHHHHHHHHHHHhcCCC-CEEEecCcccc-ccccccCcHHHHHHHhh
Confidence 4444 4566666665666889999 55555666666 77888888888887765
No 265
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=22.27 E-value=2.3e+02 Score=18.65 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=27.2
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcc---cCCeEEEEeCCCCCceeEEEEEec
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQ---FGTILEILAFKTLKHKGQAWLVFK 66 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~---~G~v~~i~~~~~~~~kg~afV~F~ 66 (245)
...-|||++++..+-+. |++.... -|...-++.. ....||+|-...
T Consensus 24 i~~GVyVg~~s~rVRe~-----lW~~v~~~~~~G~a~m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRER-----LWERVTEWIGDGSAVMVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHH-----HHHHHHhhCCCccEEEEEcc--CCCCCEEEEEeC
Confidence 35569999998887665 3333332 2444334333 336788887663
No 266
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=21.82 E-value=58 Score=19.85 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=11.2
Q ss_pred cCCCcccCHHHHHHHHHHhhcccC
Q 025982 21 NNLNEKVKIDQLKQSLHAVFKQFG 44 (245)
Q Consensus 21 ~nLp~~~~~~~l~~~l~~~F~~~G 44 (245)
+++.++++.+||+.|. ++-..||
T Consensus 40 ~~~kpSVs~~dl~~ye-~w~~~FG 62 (62)
T PF09336_consen 40 KKVKPSVSQEDLKKYE-EWTKEFG 62 (62)
T ss_dssp HTCGGSS-HHHHHHHH-HHHHHTS
T ss_pred HHcCCCCCHHHHHHHH-HHHHHcC
Confidence 4555666777765433 3334444
No 267
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.62 E-value=1.8e+02 Score=25.99 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=41.7
Q ss_pred EEeCCCC--CC-CHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEe
Q 025982 175 FVQNVPH--DT-TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 175 ~v~nl~~--~~-~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 238 (245)
+||||.. .. .-..+..+=.+||.|..+++-. .-.|.-.+.+.|..|+. -||..|.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~----~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS----VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC----ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4666652 22 3445666667899999887732 24678888999999997 47888888875
No 268
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.19 E-value=45 Score=20.76 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=14.6
Q ss_pred CCCeEEEcCCCcccCHHH
Q 025982 14 PNNTIYINNLNEKVKIDQ 31 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~ 31 (245)
-++++|||++|..+-.+.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 378999999998876655
No 269
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.18 E-value=20 Score=32.02 Aligned_cols=67 Identities=12% Similarity=0.268 Sum_probs=46.7
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCC---CCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT---LKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~---~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
..+.|+|+|+++..+-.+ |..+++.+..+..+-.... .....+++|.|+---.-..|..+||+..+.
T Consensus 230 ke~sll~rni~Pnis~ae----Ie~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAE----IENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHH----HHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 357899999999999999 6799998866666533322 123457889997666666666667765554
No 270
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.84 E-value=76 Score=28.40 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=42.9
Q ss_pred EeCCCCCCCHHHHHHH-hccCCCeeEE-EEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 176 VQNVPHDTTPMALQMF-FSQFPGFKEV-RMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 176 v~nl~~~~~~~~L~~~-f~~~G~v~~v-~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+.++|.......+... +...+..++- ++. ....++++.|.+++.+..|+..++|.-+.+..++++.+
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~-~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~ 98 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSKTKLP-KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLG 98 (534)
T ss_pred eeccCchhhhhHHHhhhhhhcccccccCCCC-CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhc
Confidence 4445544444443333 3333333322 232 23479999999999999999999998888777776654
No 271
>PRK12378 hypothetical protein; Provisional
Probab=20.64 E-value=3.7e+02 Score=21.42 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCCC--CHHHHHHHhccCCC-e---eEEEEecCCCeEEEEEEcCHHHHHHH
Q 025982 169 PPNNILFVQNVPHDT--TPMALQMFFSQFPG-F---KEVRMVEAKPGIAFVEYGDEMQATVA 224 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~--~~~~L~~~f~~~G~-v---~~v~~~~~~~g~afV~f~~~~~A~~A 224 (245)
|.+..|+|.-|.++. |..+|+.+|.++|. + -+|.++..++|+..|.-.+.++...+
T Consensus 89 PgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~kG~i~i~~~~~d~~~e~ 150 (235)
T PRK12378 89 PNGVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFVFEGDDEDELLEA 150 (235)
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeecceEEEeCCCCHHHHHHH
Confidence 455668888886544 67899999999875 3 34777777776666654454444443
No 272
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.47 E-value=2.8e+02 Score=18.57 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=28.6
Q ss_pred eEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEe-----CCCCCceeEEEE
Q 025982 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILA-----FKTLKHKGQAWL 63 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~-----~~~~~~kg~afV 63 (245)
..|+.+||..+.+.++. .....+..+++-..|.. .....+.|++.+
T Consensus 12 ~a~~a~lp~~va~R~~~-~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~ 62 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMAN-AARKRLNWYGPDVEIETDYRESDDSAFGPGSGIS 62 (103)
T ss_dssp EEEEESS-CHHHHHHHH-HHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEE
T ss_pred EEEEcCCCHHHHHHHHH-HHHHHhhhhCCCeEEEEecccCccCCCCCceEEE
Confidence 45899999998887744 34466677765556644 344556665554
No 273
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.43 E-value=15 Score=31.79 Aligned_cols=72 Identities=6% Similarity=-0.186 Sum_probs=48.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...++..+|...++.++...|.-||.|..+.+-+.- +=.+||.-.+ ..|...++-+--..++|..+++..|+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 446778899999999999999999999877665521 2256666544 34555555444455566666665553
No 274
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=20.00 E-value=1.9e+02 Score=16.46 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=26.0
Q ss_pred HHHhhcccC-CeEEEEeCCCCCceeEEEEEecCHHHHHHHH
Q 025982 36 LHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 36 l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~ 75 (245)
+.+.+...| .|..+.........+..-+.+.+.+.|.+++
T Consensus 15 i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 15 VTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345666654 6766655444334567778888888888765
Done!