Query 025982
Match_columns 245
No_of_seqs 115 out of 1834
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 22:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_A U1-A; protein-RNA compl 100.0 7.8E-40 2.7E-44 266.2 27.6 238 8-245 2-282 (282)
2 4f02_A Polyadenylate-binding p 100.0 1.5E-36 5.2E-41 237.0 21.5 167 7-244 7-179 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 8.3E-36 2.9E-40 223.6 19.5 159 16-245 1-166 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-34 3.7E-39 218.1 20.4 157 14-243 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 1.4E-34 4.8E-39 217.1 20.7 157 14-243 1-167 (167)
6 2adc_A Polypyrimidine tract-bi 100.0 1.8E-34 6.1E-39 227.7 19.1 196 10-245 29-227 (229)
7 2qfj_A FBP-interacting repress 100.0 1.1E-33 3.9E-38 220.9 21.9 169 14-244 27-203 (216)
8 1qm9_A Polypyrimidine tract-bi 100.0 4.5E-34 1.5E-38 220.5 17.5 191 15-245 3-196 (198)
9 1l3k_A Heterogeneous nuclear r 100.0 1.2E-33 4E-38 217.7 19.8 166 10-244 8-181 (196)
10 3tyt_A Heterogeneous nuclear r 100.0 1.2E-33 4.1E-38 218.8 18.4 193 13-243 2-204 (205)
11 3nmr_A Cugbp ELAV-like family 100.0 1.9E-33 6.6E-38 212.5 18.5 158 14-243 2-174 (175)
12 2cjk_A Nuclear polyadenylated 100.0 1.3E-33 4.5E-38 212.0 14.8 155 14-244 2-164 (167)
13 2yh0_A Splicing factor U2AF 65 100.0 1.3E-32 4.6E-37 212.1 19.4 175 13-244 2-192 (198)
14 2g4b_A Splicing factor U2AF 65 100.0 6.5E-33 2.2E-37 209.2 17.3 154 13-243 2-171 (172)
15 1fje_B Nucleolin RBD12, protei 100.0 2.1E-33 7.1E-38 212.6 13.7 164 10-244 8-172 (175)
16 3smz_A Protein raver-1, ribonu 100.0 2E-31 6.8E-36 216.8 21.9 162 13-244 93-262 (284)
17 3smz_A Protein raver-1, ribonu 100.0 7.6E-31 2.6E-35 213.3 20.6 150 12-244 19-173 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-31 1.1E-35 216.4 18.0 165 14-245 116-290 (292)
19 3sde_A Paraspeckle component 1 100.0 1.3E-30 4.4E-35 209.5 18.6 153 10-244 17-177 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.8E-30 1.3E-34 210.0 17.5 154 10-244 36-195 (292)
21 2i2y_A Fusion protein consists 99.9 3.9E-24 1.3E-28 157.6 12.2 137 54-244 9-146 (150)
22 2kn4_A Immunoglobulin G-bindin 99.9 5.7E-23 1.9E-27 152.6 13.3 76 169-244 68-148 (158)
23 2a3j_A U1 small nuclear ribonu 99.9 1.9E-22 6.5E-27 143.5 11.4 99 5-103 19-117 (127)
24 4f25_A Polyadenylate-binding p 99.9 1.4E-22 4.9E-27 142.4 9.7 80 14-97 4-84 (115)
25 4fxv_A ELAV-like protein 1; RN 99.9 2.5E-21 8.6E-26 132.2 11.2 75 170-244 18-97 (99)
26 3r27_A HnRNP L, heterogeneous 99.9 4E-21 1.4E-25 129.9 10.5 78 167-245 17-96 (100)
27 4fxv_A ELAV-like protein 1; RN 99.8 1E-20 3.4E-25 129.2 10.5 80 12-95 16-98 (99)
28 1nu4_A U1A RNA binding domain; 99.8 4.5E-21 1.5E-25 130.6 8.5 91 10-100 3-93 (97)
29 2cq1_A PTB-like protein L; RRM 99.8 6.1E-20 2.1E-24 125.4 12.9 76 169-245 13-90 (101)
30 2wbr_A GW182, gawky, LD47780P; 99.8 2.5E-20 8.4E-25 121.7 9.6 74 170-244 6-79 (89)
31 1x4d_A Matrin 3; structural ge 99.8 1.9E-20 6.6E-25 127.8 9.5 76 169-245 13-91 (102)
32 1sjq_A Polypyrimidine tract-bi 99.8 1.4E-20 4.8E-25 128.6 8.7 76 169-245 14-91 (105)
33 3s8s_A Histone-lysine N-methyl 99.8 6.2E-20 2.1E-24 127.6 11.9 77 169-245 4-85 (110)
34 1wex_A Hypothetical protein (r 99.8 4.6E-20 1.6E-24 126.7 11.0 77 168-245 12-90 (104)
35 2diu_A KIAA0430 protein; struc 99.8 3E-20 1E-24 122.4 9.5 83 10-99 3-87 (96)
36 2dgx_A KIAA0430 protein; RRM d 99.8 5E-20 1.7E-24 125.1 10.9 90 8-97 2-91 (96)
37 3r27_A HnRNP L, heterogeneous 99.8 4.3E-20 1.5E-24 124.9 10.1 84 7-97 13-98 (100)
38 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-19 4.4E-24 122.6 11.9 77 168-244 13-94 (94)
39 3lqv_A PRE-mRNA branch site pr 99.8 2.4E-20 8.1E-25 131.1 8.1 82 12-97 5-86 (115)
40 4f25_A Polyadenylate-binding p 99.8 7.6E-20 2.6E-24 128.4 10.6 75 170-244 4-81 (115)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-19 3.6E-24 120.7 10.7 76 169-244 5-85 (85)
42 2khc_A Testis-specific RNP-typ 99.8 3.7E-19 1.3E-23 125.5 13.8 78 167-244 36-118 (118)
43 3s8s_A Histone-lysine N-methyl 99.8 1.2E-19 4.2E-24 126.1 11.1 82 12-97 3-87 (110)
44 2lkz_A RNA-binding protein 5; 99.8 3.2E-20 1.1E-24 125.4 7.8 73 172-244 10-93 (95)
45 2ad9_A Polypyrimidine tract-bi 99.8 9.8E-20 3.4E-24 127.4 9.9 77 168-245 28-106 (119)
46 1x4f_A Matrin 3; structural ge 99.8 1.3E-19 4.5E-24 125.4 10.0 77 168-245 22-101 (112)
47 2ytc_A PRE-mRNA-splicing facto 99.8 1.8E-19 6E-24 119.6 10.3 75 169-244 10-85 (85)
48 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.4E-19 8.3E-24 119.4 11.0 77 169-245 4-85 (87)
49 2cqc_A Arginine/serine-rich sp 99.8 3.4E-19 1.2E-23 120.7 11.8 76 169-244 13-93 (95)
50 3md1_A Nuclear and cytoplasmic 99.8 4.4E-19 1.5E-23 117.1 11.2 74 172-245 2-80 (83)
51 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.6E-19 2.2E-23 121.2 12.5 77 169-245 13-92 (103)
52 2cq3_A RNA-binding protein 9; 99.8 1.2E-18 4.2E-23 119.8 13.7 77 169-245 13-92 (103)
53 2lxi_A RNA-binding protein 10; 99.8 3.6E-20 1.2E-24 124.5 5.7 74 171-244 1-81 (91)
54 2cpj_A Non-POU domain-containi 99.8 5E-19 1.7E-23 120.9 11.4 76 169-245 13-88 (99)
55 1wex_A Hypothetical protein (r 99.8 2.8E-19 9.7E-24 122.8 10.1 86 6-98 6-93 (104)
56 2lxi_A RNA-binding protein 10; 99.8 3.3E-20 1.1E-24 124.7 5.2 80 15-98 1-85 (91)
57 1x4a_A Splicing factor, argini 99.8 5.3E-19 1.8E-23 122.9 11.6 85 10-98 17-101 (109)
58 1why_A Hypothetical protein ri 99.8 6.2E-19 2.1E-23 119.9 11.7 76 168-244 14-91 (97)
59 2do4_A Squamous cell carcinoma 99.8 9.8E-19 3.4E-23 119.6 12.6 76 169-244 15-94 (100)
60 2jrs_A RNA-binding protein 39; 99.8 4.7E-19 1.6E-23 122.9 11.1 87 7-97 18-107 (108)
61 2cq0_A Eukaryotic translation 99.8 7.7E-19 2.6E-23 120.8 12.1 77 169-245 13-94 (103)
62 2x1f_A MRNA 3'-END-processing 99.8 5.6E-19 1.9E-23 119.9 11.1 76 170-245 1-81 (96)
63 3bs9_A Nucleolysin TIA-1 isofo 99.8 3E-19 1E-23 119.0 9.6 81 12-96 3-86 (87)
64 2x1f_A MRNA 3'-END-processing 99.8 4.3E-19 1.5E-23 120.5 10.5 81 14-98 1-84 (96)
65 2dgx_A KIAA0430 protein; RRM d 99.8 4.5E-19 1.5E-23 120.4 10.6 77 169-245 7-89 (96)
66 2err_A Ataxin-2-binding protei 99.8 4E-19 1.4E-23 123.5 10.4 77 169-245 27-106 (109)
67 2la6_A RNA-binding protein FUS 99.8 7.2E-19 2.5E-23 120.1 11.5 76 169-244 11-99 (99)
68 2cpz_A CUG triplet repeat RNA- 99.8 7.7E-19 2.6E-23 123.3 11.6 77 169-245 23-104 (115)
69 2dnz_A Probable RNA-binding pr 99.8 7.8E-19 2.7E-23 118.9 11.2 77 169-245 3-84 (95)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.6E-19 2.3E-23 116.8 10.6 80 11-94 3-85 (85)
71 2dgo_A Cytotoxic granule-assoc 99.8 1.3E-18 4.5E-23 122.1 12.7 77 169-245 13-94 (115)
72 3md1_A Nuclear and cytoplasmic 99.8 6.7E-19 2.3E-23 116.2 10.4 78 15-96 1-81 (83)
73 2e5h_A Zinc finger CCHC-type a 99.8 6.1E-19 2.1E-23 119.3 10.4 83 8-94 9-94 (94)
74 2ywk_A Putative RNA-binding pr 99.8 5.8E-19 2E-23 119.6 10.4 76 169-244 14-93 (95)
75 2cph_A RNA binding motif prote 99.8 1.1E-18 3.8E-23 120.8 11.8 77 169-245 13-96 (107)
76 2dnh_A Bruno-like 5, RNA bindi 99.8 1.5E-18 5.2E-23 119.8 12.4 76 169-244 13-95 (105)
77 1x5u_A Splicing factor 3B subu 99.8 9.5E-19 3.2E-23 120.8 11.3 77 169-245 13-94 (105)
78 2dgs_A DAZ-associated protein 99.8 1E-18 3.6E-23 119.3 11.4 86 8-98 3-91 (99)
79 1whw_A Hypothetical protein ri 99.8 7.6E-19 2.6E-23 119.9 10.7 84 11-98 4-90 (99)
80 1x5s_A Cold-inducible RNA-bind 99.8 5.2E-19 1.8E-23 121.4 9.8 88 7-98 4-94 (102)
81 1x4a_A Splicing factor, argini 99.8 2.3E-18 8E-23 119.6 13.2 76 169-244 20-97 (109)
82 1whw_A Hypothetical protein ri 99.8 1.1E-18 3.8E-23 119.1 11.3 77 169-245 6-87 (99)
83 2dnz_A Probable RNA-binding pr 99.8 1E-18 3.6E-23 118.3 11.1 83 12-98 2-87 (95)
84 2cqc_A Arginine/serine-rich sp 99.8 6.6E-19 2.3E-23 119.3 10.0 85 7-95 7-94 (95)
85 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.8E-19 1.7E-23 121.6 9.4 88 7-98 4-94 (102)
86 1sjq_A Polypyrimidine tract-bi 99.8 2.4E-19 8.4E-24 122.4 7.7 81 11-98 12-94 (105)
87 2cq1_A PTB-like protein L; RRM 99.8 1.1E-18 3.8E-23 119.1 10.9 83 9-98 9-93 (101)
88 2xnq_A Nuclear polyadenylated 99.8 1.4E-18 4.9E-23 118.1 11.5 75 168-245 19-94 (97)
89 2cqi_A Nucleolysin TIAR; RNA r 99.8 8.6E-19 2.9E-23 120.6 10.5 88 7-98 7-95 (103)
90 2wbr_A GW182, gawky, LD47780P; 99.8 5.2E-19 1.8E-23 115.4 8.8 75 13-94 5-79 (89)
91 2d9p_A Polyadenylate-binding p 99.8 1E-18 3.5E-23 120.2 10.8 88 7-98 7-95 (103)
92 1whx_A Hypothetical protein ri 99.8 4.5E-19 1.5E-23 123.6 9.1 75 170-245 9-83 (111)
93 1x5u_A Splicing factor 3B subu 99.8 1.1E-18 3.7E-23 120.5 10.9 87 8-98 8-97 (105)
94 1x5s_A Cold-inducible RNA-bind 99.8 8.7E-19 3E-23 120.3 10.3 77 169-245 10-91 (102)
95 2la4_A Nuclear and cytoplasmic 99.8 1.2E-19 4.1E-24 124.5 5.9 76 169-245 25-100 (101)
96 2cph_A RNA binding motif prote 99.8 1.5E-18 5.2E-23 120.1 11.5 87 8-98 8-99 (107)
97 2do4_A Squamous cell carcinoma 99.8 1.3E-18 4.6E-23 119.0 11.1 84 10-97 12-97 (100)
98 2dnm_A SRP46 splicing factor; 99.8 7.7E-19 2.6E-23 120.8 9.9 87 8-98 6-95 (103)
99 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.3E-19 3.2E-23 120.2 10.3 76 169-244 10-90 (102)
100 2jrs_A RNA-binding protein 39; 99.8 1.2E-18 4.2E-23 120.7 11.0 77 169-245 24-105 (108)
101 2jvo_A Nucleolar protein 3; nu 99.8 9.7E-19 3.3E-23 121.2 10.3 74 169-245 29-102 (108)
102 2d9p_A Polyadenylate-binding p 99.8 2E-18 7E-23 118.7 11.7 77 169-245 13-92 (103)
103 2dnq_A RNA-binding protein 4B; 99.8 1.5E-18 5.1E-23 116.4 10.7 74 169-245 6-79 (90)
104 2dgs_A DAZ-associated protein 99.8 2.5E-18 8.6E-23 117.4 11.8 75 169-244 8-87 (99)
105 1x4d_A Matrin 3; structural ge 99.8 6.9E-19 2.4E-23 120.0 8.9 81 11-98 11-94 (102)
106 2cq0_A Eukaryotic translation 99.8 1.4E-18 4.7E-23 119.5 10.6 87 8-98 8-97 (103)
107 2dgv_A HnRNP M, heterogeneous 99.8 1.1E-18 3.8E-23 117.5 9.8 84 11-98 4-88 (92)
108 2dnm_A SRP46 splicing factor; 99.8 1.2E-18 4.2E-23 119.8 10.2 76 169-244 11-91 (103)
109 2a3j_A U1 small nuclear ribonu 99.8 9E-19 3.1E-23 124.5 9.7 77 169-245 27-109 (127)
110 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-18 4.8E-23 116.9 10.1 77 169-245 6-85 (92)
111 2lea_A Serine/arginine-rich sp 99.8 2.1E-19 7.3E-24 129.6 6.3 76 170-245 46-126 (135)
112 1x4g_A Nucleolysin TIAR; struc 99.8 1.4E-18 4.8E-23 120.7 10.2 76 169-245 23-98 (109)
113 2do0_A HnRNP M, heterogeneous 99.8 4.8E-18 1.6E-22 119.0 13.0 76 169-244 13-92 (114)
114 2dnh_A Bruno-like 5, RNA bindi 99.8 2.3E-18 7.9E-23 118.8 11.2 86 9-98 9-99 (105)
115 1oo0_B CG8781-PA, drosophila Y 99.8 2.1E-18 7.1E-23 120.1 11.1 76 169-244 24-104 (110)
116 2la6_A RNA-binding protein FUS 99.8 2E-18 6.9E-23 117.8 10.8 82 9-94 7-99 (99)
117 1p27_B RNA-binding protein 8A; 99.8 1.8E-18 6.1E-23 119.6 10.6 76 169-244 21-101 (106)
118 3zzy_A Polypyrimidine tract-bi 99.8 1.8E-18 6.1E-23 122.5 10.7 72 173-244 30-104 (130)
119 1p27_B RNA-binding protein 8A; 99.8 1.4E-18 4.9E-23 120.1 10.1 82 12-97 20-104 (106)
120 3ns6_A Eukaryotic translation 99.8 5.7E-19 2E-23 120.8 7.9 83 12-98 3-95 (100)
121 3tyt_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 134.2 11.0 76 169-244 2-78 (205)
122 3ulh_A THO complex subunit 4; 99.8 3.2E-18 1.1E-22 118.5 11.8 76 169-244 27-106 (107)
123 1x4c_A Splicing factor, argini 99.8 3.8E-18 1.3E-22 118.4 12.1 74 170-245 14-92 (108)
124 1x5t_A Splicing factor 3B subu 99.8 1E-18 3.5E-23 118.6 9.0 76 170-245 4-85 (96)
125 2cpf_A RNA binding motif prote 99.8 1.5E-18 5.1E-23 118.3 9.9 76 170-245 4-87 (98)
126 2kxn_B Transformer-2 protein h 99.8 1.1E-18 3.7E-23 124.8 9.5 76 169-244 44-124 (129)
127 2cpf_A RNA binding motif prote 99.8 8.8E-19 3E-23 119.4 8.7 82 13-98 3-90 (98)
128 2hvz_A Splicing factor, argini 99.8 3.8E-19 1.3E-23 121.9 6.9 76 16-97 1-76 (101)
129 2ad9_A Polypyrimidine tract-bi 99.8 1.2E-18 4E-23 121.9 9.4 83 9-98 25-109 (119)
130 2cq3_A RNA-binding protein 9; 99.8 3E-18 1E-22 117.8 11.4 87 8-98 8-95 (103)
131 4a8x_A RNA-binding protein wit 99.8 2.1E-18 7.1E-23 115.1 10.3 75 170-244 3-83 (88)
132 2fy1_A RNA-binding motif prote 99.8 1.1E-18 3.8E-23 122.5 9.2 83 12-98 4-88 (116)
133 2lkz_A RNA-binding protein 5; 99.8 1E-18 3.4E-23 118.0 8.6 80 12-95 6-94 (95)
134 2dgo_A Cytotoxic granule-assoc 99.8 2.4E-18 8.3E-23 120.7 10.9 87 8-98 8-97 (115)
135 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-18 3.9E-23 121.0 9.0 75 170-244 27-103 (111)
136 2cpi_A CCR4-NOT transcription 99.8 1.7E-18 5.9E-23 120.7 10.0 76 169-244 13-99 (111)
137 2cqp_A RNA-binding protein 12; 99.8 1.7E-18 5.7E-23 118.0 9.6 77 169-245 13-94 (98)
138 2dgt_A RNA-binding protein 30; 99.8 4.8E-18 1.6E-22 114.4 11.8 73 169-244 8-80 (92)
139 2cpz_A CUG triplet repeat RNA- 99.8 1.5E-18 5.1E-23 121.8 9.6 86 9-98 19-107 (115)
140 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.5E-18 8.7E-23 128.3 11.4 76 169-244 70-150 (165)
141 1x4h_A RNA-binding protein 28; 99.8 2.5E-18 8.6E-23 119.8 10.7 86 9-98 9-103 (111)
142 2fc8_A NCL protein; structure 99.8 2.8E-18 9.5E-23 117.8 10.7 87 8-98 8-94 (102)
143 1x4h_A RNA-binding protein 28; 99.8 4.8E-18 1.6E-22 118.4 12.0 76 169-244 13-99 (111)
144 3ns6_A Eukaryotic translation 99.8 6.6E-19 2.2E-23 120.5 7.4 75 170-244 5-91 (100)
145 2cq2_A Hypothetical protein LO 99.8 1.1E-18 3.7E-23 120.9 8.4 76 169-245 23-105 (114)
146 1why_A Hypothetical protein ri 99.8 3.9E-18 1.3E-22 115.9 10.8 81 10-97 12-94 (97)
147 2cpe_A RNA-binding protein EWS 99.8 4.6E-18 1.6E-22 118.9 11.4 77 169-245 13-102 (113)
148 2cpd_A Apobec-1 stimulating pr 99.8 8.9E-18 3E-22 114.6 12.5 74 169-245 13-88 (99)
149 2ywk_A Putative RNA-binding pr 99.8 1.8E-18 6.3E-23 117.1 9.0 82 10-95 11-94 (95)
150 2fc9_A NCL protein; structure 99.8 1.8E-18 6.1E-23 118.5 9.0 86 8-98 8-93 (101)
151 1oo0_B CG8781-PA, drosophila Y 99.8 2.8E-18 9.6E-23 119.4 10.1 83 11-97 22-107 (110)
152 2fy1_A RNA-binding motif prote 99.8 2.9E-18 9.9E-23 120.4 10.1 76 170-245 6-85 (116)
153 1wf1_A RNA-binding protein RAL 99.8 7.7E-18 2.6E-22 117.2 12.2 73 169-244 25-98 (110)
154 2div_A TRNA selenocysteine ass 99.8 1.8E-18 6.3E-23 118.0 8.8 85 9-97 3-95 (99)
155 2err_A Ataxin-2-binding protei 99.8 1.6E-18 5.5E-23 120.4 8.6 85 8-96 22-107 (109)
156 1x5t_A Splicing factor 3B subu 99.8 1E-18 3.5E-23 118.6 7.4 82 13-98 3-88 (96)
157 2dgp_A Bruno-like 4, RNA bindi 99.8 3.2E-18 1.1E-22 118.3 10.1 76 169-244 11-94 (106)
158 3ulh_A THO complex subunit 4; 99.8 3.9E-18 1.3E-22 118.1 10.5 82 9-94 23-106 (107)
159 3lqv_A PRE-mRNA branch site pr 99.8 3.8E-18 1.3E-22 119.7 10.6 76 169-244 6-83 (115)
160 2e5j_A Methenyltetrahydrofolat 99.8 3.5E-18 1.2E-22 116.2 10.1 76 169-245 17-93 (97)
161 1wi8_A EIF-4B, eukaryotic tran 99.8 4E-18 1.4E-22 117.4 10.4 83 10-98 10-96 (104)
162 2div_A TRNA selenocysteine ass 99.8 2.3E-18 7.7E-23 117.6 9.0 76 169-244 7-92 (99)
163 1u6f_A Tcubp1, RNA-binding pro 99.8 1.4E-17 4.8E-22 120.8 13.7 77 169-245 40-121 (139)
164 2dng_A Eukaryotic translation 99.8 9.1E-18 3.1E-22 115.4 12.0 74 169-244 13-91 (103)
165 2xnq_A Nuclear polyadenylated 99.8 5E-18 1.7E-22 115.4 10.5 80 8-96 15-95 (97)
166 2dgp_A Bruno-like 4, RNA bindi 99.8 3E-18 1E-22 118.5 9.6 86 9-98 7-98 (106)
167 2dnq_A RNA-binding protein 4B; 99.8 3E-18 1E-22 114.9 9.3 79 11-98 4-82 (90)
168 2cpi_A CCR4-NOT transcription 99.8 2.6E-18 8.7E-23 119.8 9.2 83 11-97 11-102 (111)
169 4a8x_A RNA-binding protein wit 99.8 3.3E-18 1.1E-22 114.1 9.3 79 14-96 3-85 (88)
170 3s7r_A Heterogeneous nuclear r 99.8 4.5E-18 1.5E-22 113.3 9.9 81 8-93 4-87 (87)
171 2hvz_A Splicing factor, argini 99.8 1.1E-18 3.9E-23 119.5 7.1 73 172-244 1-73 (101)
172 1nu4_A U1A RNA binding domain; 99.8 2.4E-18 8.2E-23 117.0 8.7 77 169-245 6-88 (97)
173 2dnp_A RNA-binding protein 14; 99.8 4.7E-18 1.6E-22 113.9 10.0 74 169-245 7-80 (90)
174 2kxn_B Transformer-2 protein h 99.8 2.4E-18 8.3E-23 123.0 9.1 85 9-97 40-127 (129)
175 2cqd_A RNA-binding region cont 99.8 8.7E-18 3E-22 118.0 11.8 76 168-244 14-94 (116)
176 1wi8_A EIF-4B, eukaryotic tran 99.8 7.8E-18 2.7E-22 116.0 11.3 74 169-244 13-92 (104)
177 1s79_A Lupus LA protein; RRM, 99.8 2.2E-18 7.4E-23 118.3 8.4 81 10-95 6-88 (103)
178 3p5t_L Cleavage and polyadenyl 99.8 7E-19 2.4E-23 118.0 5.8 73 172-244 2-81 (90)
179 2do0_A HnRNP M, heterogeneous 99.8 7.6E-18 2.6E-22 118.0 11.3 84 9-96 9-94 (114)
180 2kvi_A Nuclear polyadenylated 99.8 3.1E-18 1.1E-22 116.2 9.0 73 169-244 8-81 (96)
181 3ex7_B RNA-binding protein 8A; 99.8 4E-18 1.4E-22 121.6 10.0 76 169-244 20-100 (126)
182 3ucg_A Polyadenylate-binding p 99.8 5.3E-18 1.8E-22 113.4 9.9 73 171-244 6-83 (89)
183 2ytc_A PRE-mRNA-splicing facto 99.8 4E-18 1.4E-22 113.0 9.2 80 8-94 5-85 (85)
184 2cq4_A RNA binding motif prote 99.8 3.8E-18 1.3E-22 119.5 9.5 74 170-244 24-102 (114)
185 2khc_A Testis-specific RNP-typ 99.8 3.4E-18 1.2E-22 120.5 9.3 81 10-94 35-118 (118)
186 1x4f_A Matrin 3; structural ge 99.8 2.1E-18 7.1E-23 119.3 8.0 82 10-98 20-104 (112)
187 2cpe_A RNA-binding protein EWS 99.8 4.4E-18 1.5E-22 119.0 9.7 86 9-98 9-105 (113)
188 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-18 4.1E-23 119.2 6.7 75 169-245 17-97 (100)
189 3p5t_L Cleavage and polyadenyl 99.8 6.3E-19 2.2E-23 118.2 5.2 79 16-98 2-85 (90)
190 2dgu_A Heterogeneous nuclear r 99.8 5.6E-18 1.9E-22 116.5 10.0 73 169-244 9-81 (103)
191 2cpj_A Non-POU domain-containi 99.8 4.3E-18 1.5E-22 116.2 9.3 84 8-98 8-91 (99)
192 2ek1_A RNA-binding protein 12; 99.8 1.9E-18 6.6E-23 117.0 7.4 76 169-244 13-93 (95)
193 1s79_A Lupus LA protein; RRM, 99.8 2.8E-18 9.5E-23 117.7 8.2 74 170-244 10-87 (103)
194 2diu_A KIAA0430 protein; struc 99.8 4.9E-18 1.7E-22 111.9 8.9 72 169-245 6-83 (96)
195 2dhg_A TRNA selenocysteine ass 99.8 3.2E-18 1.1E-22 117.9 8.4 86 9-98 3-92 (104)
196 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.3E-17 4.4E-22 121.1 12.0 75 169-243 61-140 (140)
197 2cqp_A RNA-binding protein 12; 99.7 8.4E-18 2.9E-22 114.5 10.3 83 10-96 10-95 (98)
198 2nlw_A Eukaryotic translation 99.7 3.8E-18 1.3E-22 117.7 8.7 81 12-96 12-100 (105)
199 2jvr_A Nucleolar protein 3; RN 99.7 2.7E-18 9.3E-23 119.1 7.9 81 11-96 24-105 (111)
200 3s7r_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 110.9 11.0 74 169-243 9-87 (87)
201 2kt5_A RNA and export factor-b 99.7 5.8E-17 2E-21 115.2 14.9 76 169-244 33-112 (124)
202 2dhg_A TRNA selenocysteine ass 99.7 4.4E-18 1.5E-22 117.2 8.6 76 169-244 7-88 (104)
203 1x5p_A Negative elongation fac 99.7 2.7E-17 9.2E-22 111.8 12.4 74 169-245 13-86 (97)
204 2e5i_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 115.1 13.5 75 169-244 21-100 (124)
205 2dng_A Eukaryotic translation 99.7 9.6E-18 3.3E-22 115.3 10.1 84 9-98 9-95 (103)
206 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3E-18 1E-22 117.2 7.5 81 10-96 14-98 (100)
207 1fjc_A Nucleolin RBD2, protein 99.7 2.3E-18 7.7E-23 116.9 6.8 82 10-97 11-92 (96)
208 1p1t_A Cleavage stimulation fa 99.7 1.9E-18 6.5E-23 119.0 6.5 82 13-98 6-90 (104)
209 3n9u_C Cleavage and polyadenyl 99.7 9.1E-18 3.1E-22 123.8 10.5 75 170-244 54-135 (156)
210 2kvi_A Nuclear polyadenylated 99.7 3.5E-18 1.2E-22 116.0 7.6 82 8-98 3-85 (96)
211 1x4e_A RNA binding motif, sing 99.7 1.4E-18 4.8E-23 115.2 5.5 76 169-244 3-83 (85)
212 1p1t_A Cleavage stimulation fa 99.7 4.3E-18 1.5E-22 117.2 8.1 76 170-245 7-87 (104)
213 2cqd_A RNA-binding region cont 99.7 1.1E-17 3.9E-22 117.5 10.3 84 8-96 10-96 (116)
214 1x4e_A RNA binding motif, sing 99.7 1.9E-18 6.4E-23 114.6 5.8 79 12-94 2-83 (85)
215 3ex7_B RNA-binding protein 8A; 99.7 1E-17 3.6E-22 119.4 10.1 85 10-98 17-104 (126)
216 2krb_A Eukaryotic translation 99.7 2.6E-18 9E-23 112.8 6.4 72 15-90 1-80 (81)
217 2dgw_A Probable RNA-binding pr 99.7 2.7E-17 9.2E-22 110.4 11.4 75 169-245 8-86 (91)
218 3pgw_S U1-70K; protein-RNA com 99.7 6E-18 2.1E-22 144.4 10.3 75 170-244 101-180 (437)
219 2e44_A Insulin-like growth fac 99.7 1.6E-17 5.4E-22 112.7 10.4 75 170-244 14-90 (96)
220 2dh8_A DAZ-associated protein 99.7 7.8E-18 2.7E-22 116.1 8.9 76 168-244 13-93 (105)
221 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-17 7.4E-22 122.1 11.8 76 169-244 37-117 (156)
222 2ek1_A RNA-binding protein 12; 99.7 4E-18 1.4E-22 115.4 7.1 81 11-95 11-94 (95)
223 2nlw_A Eukaryotic translation 99.7 7.3E-18 2.5E-22 116.3 8.6 75 170-244 14-98 (105)
224 1x4g_A Nucleolysin TIAR; struc 99.7 8.2E-18 2.8E-22 116.9 8.8 81 11-98 21-101 (109)
225 1u6f_A Tcubp1, RNA-binding pro 99.7 1.9E-17 6.4E-22 120.1 11.1 85 10-98 37-124 (139)
226 2jvo_A Nucleolar protein 3; nu 99.7 7.7E-18 2.6E-22 116.7 8.5 80 10-98 26-105 (108)
227 2cpy_A RNA-binding protein 12; 99.7 1E-17 3.4E-22 117.3 9.2 86 8-98 8-96 (114)
228 1whx_A Hypothetical protein ri 99.7 5.9E-18 2E-22 117.9 7.9 78 12-96 7-84 (111)
229 2fc9_A NCL protein; structure 99.7 2.7E-17 9.4E-22 112.6 11.1 73 169-244 13-89 (101)
230 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.4E-17 4.9E-22 120.8 10.3 81 9-93 57-140 (140)
231 2cpd_A Apobec-1 stimulating pr 99.7 2.4E-17 8.3E-22 112.4 10.7 86 4-98 4-91 (99)
232 2cpx_A Hypothetical protein FL 99.7 4.7E-18 1.6E-22 119.2 7.4 84 10-98 20-107 (115)
233 3n9u_C Cleavage and polyadenyl 99.7 9.6E-18 3.3E-22 123.7 9.3 80 14-97 54-138 (156)
234 2dnp_A RNA-binding protein 14; 99.7 1.5E-17 5.2E-22 111.4 9.5 80 9-97 3-82 (90)
235 1x5o_A RNA binding motif, sing 99.7 3.6E-17 1.2E-21 114.5 11.7 83 10-96 20-112 (114)
236 1x4c_A Splicing factor, argini 99.7 2.2E-17 7.5E-22 114.5 10.5 82 9-98 9-95 (108)
237 2kt5_A RNA and export factor-b 99.7 1.8E-17 6.1E-22 117.9 10.3 84 10-97 30-115 (124)
238 2cqh_A IGF-II mRNA-binding pro 99.7 6.7E-18 2.3E-22 113.9 7.6 74 170-245 7-82 (93)
239 1x4b_A Heterogeneous nuclear r 99.7 1.4E-17 4.6E-22 117.0 9.5 74 170-244 26-104 (116)
240 2e5j_A Methenyltetrahydrofolat 99.7 6E-18 2.1E-22 115.0 7.3 82 10-97 14-95 (97)
241 1sjr_A Polypyrimidine tract-bi 99.7 1.1E-17 3.9E-22 122.7 9.3 73 172-244 47-122 (164)
242 2m2b_A RNA-binding protein 10; 99.7 5.6E-18 1.9E-22 121.6 7.5 75 169-244 21-106 (131)
243 2la4_A Nuclear and cytoplasmic 99.7 5E-18 1.7E-22 116.3 6.9 77 12-95 24-100 (101)
244 1wg1_A KIAA1579 protein, homol 99.7 1.4E-17 4.7E-22 111.1 8.9 74 170-245 4-77 (88)
245 2mss_A Protein (musashi1); RNA 99.7 5.3E-18 1.8E-22 109.7 6.6 70 173-243 1-75 (75)
246 3ucg_A Polyadenylate-binding p 99.7 1.4E-17 4.7E-22 111.3 8.9 77 15-96 6-85 (89)
247 2dgt_A RNA-binding protein 30; 99.7 2E-17 6.7E-22 111.3 9.7 81 9-98 4-84 (92)
248 2dgw_A Probable RNA-binding pr 99.7 1.6E-17 5.5E-22 111.5 9.1 83 9-97 4-88 (91)
249 2dgu_A Heterogeneous nuclear r 99.7 2.2E-17 7.5E-22 113.5 9.9 80 10-98 6-85 (103)
250 2cpx_A Hypothetical protein FL 99.7 1.7E-17 5.7E-22 116.4 9.5 77 169-245 23-104 (115)
251 1x5o_A RNA binding motif, sing 99.7 7.2E-17 2.5E-21 112.9 12.7 76 169-244 23-110 (114)
252 2db1_A Heterogeneous nuclear r 99.7 1.9E-17 6.4E-22 116.6 9.6 75 169-244 15-96 (118)
253 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-17 5.5E-22 115.3 9.1 75 169-244 23-102 (109)
254 2rs2_A Musashi-1, RNA-binding 99.7 1.5E-17 5.1E-22 115.5 8.9 83 10-97 20-105 (109)
255 2dh8_A DAZ-associated protein 99.7 6.2E-18 2.1E-22 116.7 6.9 85 9-98 10-97 (105)
256 2i2y_A Fusion protein consists 99.7 2.4E-17 8.3E-22 121.1 10.5 82 9-96 67-148 (150)
257 3egn_A RNA-binding protein 40; 99.7 5.7E-18 1.9E-22 123.4 7.0 84 10-97 40-131 (143)
258 2dis_A Unnamed protein product 99.7 1.9E-17 6.6E-22 114.9 9.0 83 12-98 5-94 (109)
259 2cpy_A RNA-binding protein 12; 99.7 2.3E-17 8E-22 115.4 9.5 75 169-244 13-92 (114)
260 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.1E-17 1.1E-21 121.3 10.7 83 12-98 36-121 (156)
261 2m2b_A RNA-binding protein 10; 99.7 4E-18 1.4E-22 122.4 5.7 83 11-98 19-110 (131)
262 1wg5_A Heterogeneous nuclear r 99.7 3.7E-17 1.3E-21 112.5 10.2 83 9-96 9-94 (104)
263 1wg5_A Heterogeneous nuclear r 99.7 4.8E-17 1.6E-21 111.9 10.8 76 169-245 13-93 (104)
264 2mss_A Protein (musashi1); RNA 99.7 7.8E-18 2.7E-22 108.8 6.1 72 17-93 1-75 (75)
265 2kn4_A Immunoglobulin G-bindin 99.7 3.1E-17 1.1E-21 121.5 10.2 82 12-97 67-151 (158)
266 1wel_A RNA-binding protein 12; 99.7 1.7E-17 5.9E-22 117.9 8.4 82 11-97 21-105 (124)
267 3d2w_A TAR DNA-binding protein 99.7 4.8E-17 1.6E-21 108.6 10.1 72 169-244 9-82 (89)
268 2cqg_A TDP-43, TAR DNA-binding 99.7 6.2E-17 2.1E-21 111.2 10.8 84 9-98 9-95 (103)
269 2krb_A Eukaryotic translation 99.7 7.1E-18 2.4E-22 110.7 5.8 71 171-241 1-81 (81)
270 2cq4_A RNA binding motif prote 99.7 1.7E-17 5.9E-22 116.1 8.1 80 14-98 24-106 (114)
271 1wel_A RNA-binding protein 12; 99.7 1.3E-17 4.3E-22 118.6 7.4 75 169-244 23-102 (124)
272 2cqg_A TDP-43, TAR DNA-binding 99.7 1E-16 3.5E-21 110.1 11.8 74 169-244 13-91 (103)
273 2fc8_A NCL protein; structure 99.7 7E-17 2.4E-21 110.7 10.8 74 169-245 13-91 (102)
274 2jwn_A Embryonic polyadenylate 99.7 2.4E-17 8.3E-22 117.1 8.7 74 170-244 35-113 (124)
275 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.7E-18 3.3E-22 108.9 6.0 71 172-243 1-76 (77)
276 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.8E-17 1.6E-21 121.4 10.6 83 12-98 69-154 (165)
277 2cqh_A IGF-II mRNA-binding pro 99.7 9.6E-18 3.3E-22 113.1 6.0 80 11-98 4-85 (93)
278 2lea_A Serine/arginine-rich sp 99.7 8.6E-18 3E-22 121.1 6.1 85 10-98 42-129 (135)
279 2ki2_A SS-DNA binding protein 99.7 4.2E-18 1.4E-22 114.1 4.0 78 16-98 2-82 (90)
280 2dis_A Unnamed protein product 99.7 3.1E-17 1.1E-21 113.9 8.5 76 169-244 6-90 (109)
281 2bz2_A Negative elongation fac 99.7 4.8E-17 1.7E-21 114.9 9.6 74 169-245 37-110 (121)
282 3zzy_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 116.2 8.5 77 16-98 29-108 (130)
283 1wf1_A RNA-binding protein RAL 99.7 3.3E-17 1.1E-21 114.0 8.5 77 12-97 24-101 (110)
284 2ki2_A SS-DNA binding protein 99.7 5.3E-18 1.8E-22 113.6 4.3 72 172-244 2-78 (90)
285 2dnn_A RNA-binding protein 12; 99.7 7.6E-17 2.6E-21 111.5 10.1 73 170-244 15-91 (109)
286 2cq2_A Hypothetical protein LO 99.7 3.6E-17 1.2E-21 113.2 8.3 81 11-98 21-108 (114)
287 2hgl_A HNRPF protein, heteroge 99.7 4E-17 1.4E-21 117.3 8.7 75 169-244 42-123 (136)
288 1fjc_A Nucleolin RBD2, protein 99.7 3E-17 1E-21 111.3 7.6 75 169-244 14-89 (96)
289 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.2E-17 4.2E-22 108.4 5.5 73 16-93 1-76 (77)
290 2e44_A Insulin-like growth fac 99.7 8.8E-17 3E-21 109.0 9.8 84 8-96 8-92 (96)
291 1sjr_A Polypyrimidine tract-bi 99.7 4.4E-17 1.5E-21 119.6 8.8 79 15-98 46-126 (164)
292 1wez_A HnRNP H', FTP-3, hetero 99.7 8.9E-17 3E-21 110.1 9.7 74 169-244 13-90 (102)
293 1wez_A HnRNP H', FTP-3, hetero 99.7 7.1E-17 2.4E-21 110.6 9.1 83 9-97 9-93 (102)
294 4f02_A Polyadenylate-binding p 99.7 1E-16 3.6E-21 124.5 11.1 76 169-244 13-93 (213)
295 3egn_A RNA-binding protein 40; 99.7 5.6E-17 1.9E-21 118.1 8.9 76 169-244 43-128 (143)
296 2jwn_A Embryonic polyadenylate 99.7 5.4E-17 1.9E-21 115.3 8.6 79 15-98 36-117 (124)
297 1fj7_A Nucleolin RBD1, protein 99.7 6.4E-18 2.2E-22 115.7 3.5 82 12-98 14-97 (101)
298 1wg1_A KIAA1579 protein, homol 99.7 4.9E-17 1.7E-21 108.4 7.6 77 13-97 3-79 (88)
299 2hgl_A HNRPF protein, heteroge 99.7 3.3E-17 1.1E-21 117.8 7.2 83 10-97 39-126 (136)
300 2db1_A Heterogeneous nuclear r 99.7 4.9E-17 1.7E-21 114.4 8.0 83 10-97 12-99 (118)
301 1x5p_A Negative elongation fac 99.7 1.6E-16 5.4E-21 107.9 9.9 80 10-98 10-89 (97)
302 3q2s_C Cleavage and polyadenyl 99.7 5.1E-17 1.7E-21 127.4 8.4 75 170-244 67-148 (229)
303 1x4b_A Heterogeneous nuclear r 99.7 4.8E-17 1.6E-21 114.2 7.3 79 15-98 27-108 (116)
304 2pe8_A Splicing factor 45; RRM 99.7 3.1E-16 1.1E-20 107.7 11.1 76 169-244 6-92 (105)
305 3beg_B Splicing factor, argini 99.7 6.5E-17 2.2E-21 113.3 7.8 73 170-244 15-92 (115)
306 2e5i_A Heterogeneous nuclear r 99.7 2E-16 6.9E-21 111.4 10.3 80 12-98 20-104 (124)
307 2e5g_A U6 snRNA-specific termi 99.7 1.6E-16 5.5E-21 107.2 9.4 74 170-244 7-80 (94)
308 2hzc_A Splicing factor U2AF 65 99.7 1.2E-16 4.1E-21 106.2 8.5 72 169-242 4-86 (87)
309 1fj7_A Nucleolin RBD1, protein 99.7 2.7E-17 9.1E-22 112.6 5.3 74 170-245 16-94 (101)
310 2f3j_A RNA and export factor b 99.7 1.6E-16 5.4E-21 119.7 10.0 76 169-244 86-165 (177)
311 2lmi_A GRSF-1, G-rich sequence 99.7 4.9E-17 1.7E-21 112.5 6.2 75 169-244 9-90 (107)
312 2lmi_A GRSF-1, G-rich sequence 99.7 4.8E-17 1.7E-21 112.5 6.2 83 10-97 6-93 (107)
313 2lcw_A RNA-binding protein FUS 99.5 3E-18 1E-22 120.4 0.0 84 11-98 3-97 (116)
314 1iqt_A AUF1, heterogeneous nuc 99.7 3E-17 1E-21 106.1 4.7 72 17-93 1-75 (75)
315 2adc_A Polypyrimidine tract-bi 99.7 1.5E-16 5E-21 125.1 9.3 77 168-244 31-108 (229)
316 3d2w_A TAR DNA-binding protein 99.7 2.9E-16 9.8E-21 104.8 9.3 79 10-98 6-86 (89)
317 1iqt_A AUF1, heterogeneous nuc 99.7 2.8E-17 9.6E-22 106.2 4.2 70 173-243 1-75 (75)
318 2dnn_A RNA-binding protein 12; 99.7 1.1E-16 3.7E-21 110.7 7.1 77 15-97 16-94 (109)
319 2f3j_A RNA and export factor b 99.7 2.2E-16 7.4E-21 118.9 9.3 83 11-97 84-168 (177)
320 1fxl_A Paraneoplastic encephal 99.7 5.4E-16 1.8E-20 115.4 11.2 74 171-244 2-80 (167)
321 2dha_A FLJ20171 protein; RRM d 99.7 1.1E-16 3.8E-21 113.0 7.0 79 13-96 21-105 (123)
322 2lcw_A RNA-binding protein FUS 99.5 5.6E-18 1.9E-22 119.0 0.0 76 169-244 5-93 (116)
323 1b7f_A Protein (SXL-lethal pro 99.7 4.7E-16 1.6E-20 116.0 10.3 75 170-244 2-81 (168)
324 2e5g_A U6 snRNA-specific termi 99.7 3.1E-16 1.1E-20 105.8 8.5 78 12-97 5-83 (94)
325 3q2s_C Cleavage and polyadenyl 99.7 1.2E-16 4.1E-21 125.3 7.2 80 14-97 67-151 (229)
326 3beg_B Splicing factor, argini 99.7 3.2E-16 1.1E-20 109.7 8.6 76 12-95 13-93 (115)
327 3md3_A Nuclear and cytoplasmic 99.7 8E-16 2.7E-20 114.4 11.3 81 10-94 82-165 (166)
328 2hzc_A Splicing factor U2AF 65 99.7 2.6E-16 9E-21 104.6 7.5 73 12-92 3-86 (87)
329 1wf0_A TDP-43, TAR DNA-binding 99.7 1.2E-16 4.1E-21 106.5 5.8 73 170-244 4-76 (88)
330 3u1l_A PRE-mRNA-splicing facto 99.7 2.3E-16 7.9E-21 123.3 8.1 75 169-244 132-227 (240)
331 2hgm_A HNRPF protein, heteroge 99.7 2.3E-16 7.7E-21 111.7 7.2 81 10-96 37-121 (126)
332 2xs2_A Deleted in azoospermia- 99.7 2E-16 6.8E-21 108.4 6.8 73 170-244 8-84 (102)
333 2xs2_A Deleted in azoospermia- 99.6 7.9E-17 2.7E-21 110.4 4.6 81 12-98 6-88 (102)
334 2dit_A HIV TAT specific factor 99.6 2.1E-15 7.2E-20 105.1 11.8 76 169-244 13-100 (112)
335 1fje_B Nucleolin RBD12, protei 99.6 5.2E-16 1.8E-20 116.7 8.8 79 12-96 96-174 (175)
336 1qm9_A Polypyrimidine tract-bi 99.6 3.7E-16 1.3E-20 119.9 8.0 74 171-244 3-77 (198)
337 2pe8_A Splicing factor 45; RRM 99.6 1.3E-15 4.5E-20 104.6 9.9 80 12-95 5-93 (105)
338 2bz2_A Negative elongation fac 99.6 6.5E-16 2.2E-20 109.0 8.4 79 11-98 35-113 (121)
339 2hgm_A HNRPF protein, heteroge 99.6 5E-16 1.7E-20 109.9 7.4 73 170-244 41-119 (126)
340 2dha_A FLJ20171 protein; RRM d 99.6 3.9E-16 1.3E-20 110.2 6.5 74 170-244 22-103 (123)
341 2hgn_A Heterogeneous nuclear r 99.6 1.4E-16 4.7E-21 114.9 4.2 73 170-244 45-121 (139)
342 2hgn_A Heterogeneous nuclear r 99.6 1.6E-16 5.4E-21 114.6 4.5 81 12-98 43-125 (139)
343 3pgw_A U1-A; protein-RNA compl 99.6 2.6E-15 8.9E-20 121.5 11.9 78 168-245 6-89 (282)
344 3v4m_A Splicing factor U2AF 65 99.6 2.2E-15 7.5E-20 103.5 9.3 76 169-244 3-95 (105)
345 2qfj_A FBP-interacting repress 99.6 2.6E-15 8.8E-20 116.6 10.7 82 13-98 123-207 (216)
346 1wf0_A TDP-43, TAR DNA-binding 99.6 3.6E-16 1.2E-20 104.2 5.0 78 13-98 3-80 (88)
347 2g4b_A Splicing factor U2AF 65 99.6 2.8E-15 9.6E-20 112.2 10.2 79 12-94 91-172 (172)
348 3pgw_S U1-70K; protein-RNA com 99.6 2.2E-15 7.4E-20 128.7 10.3 82 12-97 99-183 (437)
349 2dnl_A Cytoplasmic polyadenyla 99.6 2.1E-15 7E-20 105.5 8.3 76 12-94 5-86 (114)
350 3sde_A Paraspeckle component 1 99.6 5.9E-15 2E-19 118.1 11.7 75 169-244 20-94 (261)
351 3u1l_A PRE-mRNA-splicing facto 99.6 2E-15 6.8E-20 118.0 8.7 80 12-98 131-231 (240)
352 2yh0_A Splicing factor U2AF 65 99.6 4.2E-15 1.4E-19 113.8 10.1 81 13-97 112-195 (198)
353 3nmr_A Cugbp ELAV-like family 99.6 4.7E-15 1.6E-19 111.2 10.0 79 12-94 92-175 (175)
354 2dit_A HIV TAT specific factor 99.6 4.4E-15 1.5E-19 103.4 9.1 88 9-97 9-103 (112)
355 2cjk_A Nuclear polyadenylated 99.6 1.6E-15 5.4E-20 113.1 6.9 78 14-96 86-166 (167)
356 2j8a_A Histone-lysine N-methyl 99.6 3.1E-15 1.1E-19 104.1 7.3 73 172-244 3-94 (136)
357 1l3k_A Heterogeneous nuclear r 99.6 8.4E-15 2.9E-19 111.9 10.5 75 169-244 11-90 (196)
358 3v4m_A Splicing factor U2AF 65 99.6 1.1E-14 3.7E-19 100.0 9.9 84 13-96 3-97 (105)
359 2j8a_A Histone-lysine N-methyl 99.6 1.7E-15 5.8E-20 105.5 5.8 76 16-95 3-95 (136)
360 2voo_A Lupus LA protein; RNA-b 99.6 9.1E-15 3.1E-19 111.6 10.1 75 170-245 108-186 (193)
361 2voo_A Lupus LA protein; RNA-b 99.6 7.3E-15 2.5E-19 112.1 9.2 76 15-95 109-186 (193)
362 3ue2_A Poly(U)-binding-splicin 99.6 1.3E-14 4.4E-19 101.6 9.6 75 170-244 19-107 (118)
363 3s6e_A RNA-binding protein 39; 99.6 2.3E-14 7.7E-19 99.6 10.7 76 169-244 5-91 (114)
364 2dnl_A Cytoplasmic polyadenyla 99.6 8.3E-15 2.8E-19 102.4 8.2 70 170-242 7-84 (114)
365 3s6e_A RNA-binding protein 39; 99.5 4.2E-14 1.4E-18 98.2 9.8 84 12-96 4-93 (114)
366 3tht_A Alkylated DNA repair pr 99.5 2.3E-14 8E-19 117.7 9.7 76 169-245 16-98 (345)
367 2d9o_A DNAJ (HSP40) homolog, s 99.5 8.3E-14 2.8E-18 94.4 10.5 73 171-245 10-89 (100)
368 3ue2_A Poly(U)-binding-splicin 99.5 2.8E-14 9.6E-19 99.8 8.2 83 13-95 18-108 (118)
369 1jmt_A Splicing factor U2AF 35 99.5 7E-15 2.4E-19 100.8 3.9 66 178-243 22-103 (104)
370 1jmt_A Splicing factor U2AF 35 99.5 2E-14 6.8E-19 98.5 5.8 74 20-93 20-103 (104)
371 3tht_A Alkylated DNA repair pr 99.4 2.3E-13 7.9E-18 111.8 8.9 77 11-94 14-97 (345)
372 2d9o_A DNAJ (HSP40) homolog, s 99.4 8.8E-13 3E-17 89.4 10.3 78 12-97 7-91 (100)
373 2dnr_A Synaptojanin-1; RRM dom 99.4 1.5E-12 5.1E-17 85.0 9.0 73 168-244 4-84 (91)
374 1owx_A Lupus LA protein, SS-B, 99.4 3.1E-12 1.1E-16 88.9 10.4 76 167-243 14-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.3 1E-11 3.5E-16 81.0 8.6 78 12-95 4-85 (91)
376 1ufw_A Synaptojanin 2; RNP dom 99.2 4.2E-11 1.5E-15 78.5 7.0 72 167-242 11-91 (95)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 6.8E-11 2.3E-15 77.5 5.8 80 9-94 9-93 (95)
378 1owx_A Lupus LA protein, SS-B, 99.1 3.9E-10 1.3E-14 78.4 9.7 82 10-98 13-98 (121)
379 3dxb_A Thioredoxin N-terminall 99.0 1.8E-09 6.3E-14 83.9 9.5 73 171-243 124-210 (222)
380 3dxb_A Thioredoxin N-terminall 98.9 5.9E-09 2E-13 81.1 10.2 82 14-95 123-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.9 5.9E-09 2E-13 69.7 8.5 70 171-241 21-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.4 7.2E-07 2.4E-11 59.7 7.3 75 12-93 18-97 (117)
383 1wey_A Calcipressin 1; structu 98.3 1E-06 3.5E-11 58.7 5.9 77 16-95 6-83 (104)
384 1wey_A Calcipressin 1; structu 98.3 2.7E-06 9.1E-11 56.7 6.6 72 172-244 6-82 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.1 5.4E-05 1.9E-09 50.2 10.2 72 12-93 5-81 (104)
386 1whv_A Poly(A)-specific ribonu 98.1 2.1E-05 7.1E-10 51.5 7.6 62 8-79 9-70 (100)
387 1uw4_A UPF3X; nonsense mediate 98.0 6.9E-05 2.4E-09 49.0 8.6 63 172-234 2-71 (91)
388 1uw4_A UPF3X; nonsense mediate 97.8 0.00011 3.9E-09 48.0 7.6 75 16-94 2-86 (91)
389 2dhx_A Poly (ADP-ribose) polym 97.7 0.00045 1.5E-08 45.8 9.9 68 170-241 7-79 (104)
390 3ctr_A Poly(A)-specific ribonu 97.7 3.5E-05 1.2E-09 50.6 3.8 55 15-79 6-60 (101)
391 1whv_A Poly(A)-specific ribonu 97.6 0.00047 1.6E-08 45.1 7.6 56 170-229 15-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 97.4 0.0016 5.5E-08 44.5 8.8 69 171-242 24-93 (119)
393 1wwh_A Nucleoporin 35, nucleop 97.4 0.00069 2.4E-08 46.3 6.9 74 13-95 22-96 (119)
394 2l08_A Regulator of nonsense t 97.3 0.00082 2.8E-08 44.2 6.5 76 15-94 9-94 (97)
395 2l08_A Regulator of nonsense t 97.3 0.00057 2E-08 44.9 5.6 64 171-234 9-79 (97)
396 3ctr_A Poly(A)-specific ribonu 97.2 0.00065 2.2E-08 44.6 5.2 55 171-229 6-60 (101)
397 3p3d_A Nucleoporin 53; structu 97.0 0.00082 2.8E-08 46.6 4.3 74 16-95 8-98 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.7 0.0011 3.9E-08 56.3 3.7 54 172-226 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 96.5 0.003 1E-07 43.8 4.5 70 172-243 8-96 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.9 0.0036 1.2E-07 53.3 2.6 56 14-76 52-107 (464)
401 3d45_A Poly(A)-specific ribonu 94.5 0.15 5.1E-06 44.1 8.6 57 14-80 439-495 (507)
402 2g0c_A ATP-dependent RNA helic 92.2 0.21 7.2E-06 31.0 4.3 68 173-245 2-76 (76)
403 3d45_A Poly(A)-specific ribonu 91.2 0.94 3.2E-05 39.2 8.6 56 171-230 440-495 (507)
404 4eyt_A Telomerase associated p 74.3 14 0.00048 23.5 8.0 56 170-228 11-66 (129)
405 1xn9_A 30S ribosomal protein S 70.9 12 0.00042 24.5 5.6 50 25-75 28-81 (101)
406 1ywx_A 30S ribosomal protein S 69.2 13 0.00046 24.3 5.5 48 25-73 28-79 (102)
407 2v94_A RPS24, 30S ribosomal pr 66.8 17 0.00058 24.1 5.7 49 25-74 37-89 (107)
408 2g1d_A 30S ribosomal protein S 59.0 15 0.00051 23.9 4.2 48 25-73 29-80 (98)
409 2xzm_P RPS24E; ribosome, trans 56.0 37 0.0013 23.8 6.0 49 25-74 31-83 (149)
410 4e8u_A Putative uncharacterize 53.9 35 0.0012 24.7 5.8 48 173-220 14-74 (172)
411 3lpe_A Putative transcription 46.6 53 0.0018 20.8 5.5 51 28-80 21-72 (92)
412 3u5c_Y RP50, 40S ribosomal pro 42.8 52 0.0018 22.7 5.1 49 25-74 33-85 (135)
413 3ts2_A Protein LIN-28 homolog 39.8 5.5 0.00019 28.1 -0.2 28 186-216 2-29 (148)
414 4e8u_A Putative uncharacterize 39.0 75 0.0026 22.9 5.6 50 17-70 14-74 (172)
415 3j21_T 50S ribosomal protein L 36.6 77 0.0026 19.9 4.8 55 19-75 26-80 (86)
416 1vq8_S 50S ribosomal protein L 32.2 66 0.0023 20.2 3.9 52 20-73 26-77 (85)
417 2e5p_A Protein PHF1, PHD finge 27.3 35 0.0012 20.3 1.8 19 44-67 28-46 (68)
418 1vd2_A Protein kinase C, IOTA 26.9 1.2E+02 0.0042 19.1 6.7 57 18-79 17-75 (89)
419 3fry_A Probable copper-exporti 25.0 1E+02 0.0036 17.6 5.5 58 171-231 6-63 (73)
420 2eqj_A Metal-response element- 24.7 44 0.0015 19.9 1.9 19 44-67 32-50 (66)
421 2m0o_A PHD finger protein 1; t 24.4 37 0.0013 20.8 1.6 19 44-67 45-63 (79)
422 2w7a_A LINE-1 ORF1P; RNA-bindi 24.2 1.5E+02 0.0052 19.2 5.7 77 15-91 3-98 (100)
423 2q2k_A Hypothetical protein; p 22.5 27 0.00094 19.7 0.7 26 19-44 42-67 (70)
424 1nz8_A Transcription antitermi 20.9 1.8E+02 0.0061 19.1 4.8 25 57-81 61-90 (119)
425 2kpo_A Rossmann 2X2 fold prote 20.9 1.6E+02 0.0053 18.1 5.7 51 27-90 33-83 (110)
426 2lvl_A SPAI; lantibiotic SELF- 20.3 52 0.0018 21.1 1.8 48 170-217 55-115 (128)
No 1
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=7.8e-40 Score=266.22 Aligned_cols=238 Identities=50% Similarity=0.814 Sum_probs=170.8
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
+..+..++++|||+|||.++++++|++.|+++|+.||.|.+|++.++++++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 2 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 2 AVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCC-------CCcc----------------ccCCC
Q 025982 88 MRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMG-------LNPA----------------YAGAY 144 (245)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----------------~~~~~ 144 (245)
|+|.++...........+.+............................ .... .....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999999877654444444433322221111110000000000000000 0000 00000
Q ss_pred CCCCCCCCCCCCCCC-------------------CCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEec
Q 025982 145 GATPPLSQIPYPGGA-------------------KSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE 205 (245)
Q Consensus 145 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~ 205 (245)
+.+.++...+.+... .........+++++|||+|||..+++++|+++|+.||.|.+|++++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 000000000000000 0001123445678999999999999999999999999999999999
Q ss_pred CCCeEEEEEEcCHHHHHHHHHHhCCCeeC-CeEeEEEEecC
Q 025982 206 AKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245 (245)
Q Consensus 206 ~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~ak~ 245 (245)
+++|+|||+|.+.++|..|++.|||..|+ |++|+|+||||
T Consensus 242 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 242 GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 88899999999999999999999999999 99999999997
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.5e-36 Score=237.05 Aligned_cols=167 Identities=22% Similarity=0.344 Sum_probs=143.1
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCcc
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~ 83 (245)
+...+..|.++|||+|||.++++++ |+++|+.||.|.+|.+. .+++++|||||+|.+.++|.+|++.+|+..+
T Consensus 7 ~p~~p~~p~~tlfVgnLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~ 82 (213)
T 4f02_A 7 NPSAPSYPMASLYVGDLHPDVTEAM----LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 82 (213)
T ss_dssp --------CCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHH----HHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc
Confidence 3455567889999999999999999 77999999999998654 4688999999999999999999999999999
Q ss_pred CCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 025982 84 YDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVI 163 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (245)
.|+.|++.++........
T Consensus 83 ~g~~i~~~~~~~~~~~~~-------------------------------------------------------------- 100 (213)
T 4f02_A 83 KGKPVRIMWSQRDPSLRK-------------------------------------------------------------- 100 (213)
T ss_dssp TTEECEEEECCCCTHHHH--------------------------------------------------------------
T ss_pred CCcccccccccccccccc--------------------------------------------------------------
Confidence 999999998765433110
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEE
Q 025982 164 PEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 240 (245)
Q Consensus 164 ~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 240 (245)
....+|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.+.++|.+|++.|||..|+|++|.|
T Consensus 101 -----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V 175 (213)
T 4f02_A 101 -----SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 175 (213)
T ss_dssp -----HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred -----cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 123569999999999999999999999999999998753 789999999999999999999999999999999
Q ss_pred EEec
Q 025982 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
.||+
T Consensus 176 ~~a~ 179 (213)
T 4f02_A 176 GRFK 179 (213)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9986
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-36 Score=223.56 Aligned_cols=159 Identities=23% Similarity=0.364 Sum_probs=141.8
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
++|||+|||.++++++ |+++|+.||.|.+|.+. +++.++|||||+|.+.++|.+|++.+|+..+.|+.|.|.++
T Consensus 1 R~l~V~nlp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDI----LKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHH----HHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHH----HHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 6899999999999999 77999999999998665 35678999999999999999999989999999999999997
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcE
Q 025982 94 KTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNI 173 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
..... ....++.+
T Consensus 77 ~~~~~-------------------------------------------------------------------~~~~~~~~ 89 (166)
T 3md3_A 77 FQSQQ-------------------------------------------------------------------SSSDDTFN 89 (166)
T ss_dssp CCCCC-------------------------------------------------------------------CCCTTCEE
T ss_pred CCCCC-------------------------------------------------------------------CCCCCCce
Confidence 54321 01135678
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 174 LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 174 l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|+..|||..++|++|+|+||+|
T Consensus 90 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 90 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999999999999998753 68999999999999999999999999999999999986
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.1e-34 Score=218.08 Aligned_cols=157 Identities=24% Similarity=0.405 Sum_probs=142.1
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
++++|||+|||.++++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRE----LYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 568999999999999999 77999999999998655 47789999999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++.+... ..+
T Consensus 78 ~~~~~~~~---------------------------------------------------------------------~~~ 88 (168)
T 1b7f_A 78 SYARPGGE---------------------------------------------------------------------SIK 88 (168)
T ss_dssp EECCCCSS---------------------------------------------------------------------TTT
T ss_pred EecCCCcc---------------------------------------------------------------------cCC
Confidence 99764321 024
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCC--eEeEEEEe
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~i~v~~a 243 (245)
+.+|+|+|||..+++++|+++|++||.|.++.+++++ +|+|||+|.+.++|.+|++.|||..+.| ++|+|+||
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 5779999999999999999999999999999998864 5899999999999999999999999987 99999997
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.4e-34 Score=217.09 Aligned_cols=157 Identities=20% Similarity=0.403 Sum_probs=140.7
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
++++|||+|||+++++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 1 s~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEE----FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CcceEEEcCCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 368999999999999999 77999999999987554 37889999999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++.+.... ..
T Consensus 77 ~~~~~~~~~---------------------------------------------------------------------~~ 87 (167)
T 1fxl_A 77 SYARPSSAS---------------------------------------------------------------------IR 87 (167)
T ss_dssp EECCCCCGG---------------------------------------------------------------------GT
T ss_pred EecCCCccc---------------------------------------------------------------------CC
Confidence 998643220 13
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeE--eEEEEe
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ--LLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~--i~v~~a 243 (245)
+.+|+|+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|++.|||..++|+. |+|+||
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 4679999999999999999999999999999998764 689999999999999999999999999965 999997
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.8e-34 Score=227.71 Aligned_cols=196 Identities=19% Similarity=0.297 Sum_probs=150.7
Q ss_pred CCCCCCCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 10 NEISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
...+++++|||+|||. ++++++ |+++|+.||.|..|.+..+. +|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~----L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQS----LFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHH----HHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCEEEEeCCCcccCCHHH----HHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4456789999999999 999999 77999999999999888764 7999999999999999999999999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.++................ ..+. ... ....... . +.........
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~-~~~~-----------~~~----------~~~~~~~---------~---~~~~~~~~~~ 148 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQG-LTKD-----------YGN----------SPLHRFK---------K---PGSKNFQNIF 148 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTT-TEEE-----------CTT----------CSSCCCC---------S---TTSGGGTTCC
T ss_pred EEEEecCccccCccccccccc-cccc-----------ccc----------CcccccC---------C---ccccccccCC
Confidence 999987653321110000000 0000 000 0000000 0 0000001123
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC-CeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G-~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~ak~ 245 (245)
+++.+|||+|||..+++++|+++|+.|| .|.++.+++..+|+|||+|.+.++|..|++.|||..++ |++|+|+||+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 4678999999999999999999999999 99999998866799999999999999999999999999 99999999973
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.1e-33 Score=220.94 Aligned_cols=169 Identities=21% Similarity=0.321 Sum_probs=143.1
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 27 ~~~~l~V~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDT----IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cCCEEEEECCCCCCCHHH----HHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 468999999999999999 779999999999997754 6778999999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++......... ...... ....
T Consensus 103 ~~~~~~~~~~~~----------~~~~~~------------------------------------------------~~~~ 124 (216)
T 2qfj_A 103 GRPSNIGQAQPI----------IDQLAE------------------------------------------------EARA 124 (216)
T ss_dssp ECCSCCGGGHHH----------HHHHHH------------------------------------------------HHTT
T ss_pred ecCCCccccchh----------hhhhhc------------------------------------------------ccCC
Confidence 887654321110 000000 0024
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..+|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|+..|||..|+|++|+|.||+
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 5789999999999999999999999999999999863 6899999999999999999999999999999999986
No 8
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=4.5e-34 Score=220.52 Aligned_cols=191 Identities=20% Similarity=0.333 Sum_probs=147.9
Q ss_pred CCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 15 NNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 15 ~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
+++|||+|||. ++++++ |+++|+.||.|..|.+..+. +|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~----l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQS----LFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHH----HHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHH----HHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 58999999999 999999 77999999999999888764 799999999999999999999999999999999998
Q ss_pred cccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcE
Q 025982 94 KTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNI 173 (245)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
................. .+ .+.... . ..... +.........+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~-------------------------~~~~~~---~--~r~~~---~~~~~~~~~~~~~~~ 122 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGL-TK-------------------------DYGNSP---L--HRFKK---PGSKNFQNIFPPSAT 122 (198)
T ss_dssp CCCSCCCSSSSSSSSSC-EE-------------------------ESSCCC---T--TSSSS---CCCCCCSCCCCCCCE
T ss_pred cCCCcCCCCcCCccccc-cc-------------------------cccCCc---h--hhccC---ccccccccCCCCccE
Confidence 76543211100000000 00 000000 0 00000 000001112356789
Q ss_pred EEEeCCCCCCCHHHHHHHhccCC-CeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC-CeEeEEEEecC
Q 025982 174 LFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITYAKK 245 (245)
Q Consensus 174 l~v~nl~~~~~~~~L~~~f~~~G-~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~ak~ 245 (245)
|||+|||..+++++|+++|+.|| .|.++.++++.+|+|||+|.+.++|..|+..|||..++ |++|+|+||+.
T Consensus 123 l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 123 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99999999999999999999999 99999998877899999999999999999999999999 99999999974
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.2e-33 Score=217.65 Aligned_cols=166 Identities=17% Similarity=0.299 Sum_probs=141.0
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|.+|.+. .+|.++|||||+|.+.++|.+|+. +++..+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~ 82 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDES----LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGR 82 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCE
Confidence 4455689999999999999999 77999999999998655 367899999999999999999998 499999999
Q ss_pred eEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 87 PMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEA 166 (245)
Q Consensus 87 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (245)
.|.|.++........ ..
T Consensus 83 ~l~v~~~~~~~~~~~---------------------------------------------------------------~~ 99 (196)
T 1l3k_A 83 VVEPKRAVSREDSQR---------------------------------------------------------------PG 99 (196)
T ss_dssp ECEEEECCC-----------------------------------------------------------------------
T ss_pred EeeeecccCcccccc---------------------------------------------------------------cc
Confidence 999999765322100 00
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
...+..+|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.+.++|.+|+.. +|..|+|++|.|.
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 11245789999999999999999999999999999999763 68999999999999999985 8999999999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
||.
T Consensus 179 ~a~ 181 (196)
T 1l3k_A 179 KAL 181 (196)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 10
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.2e-33 Score=218.79 Aligned_cols=193 Identities=13% Similarity=0.224 Sum_probs=142.5
Q ss_pred CCCCeEEEcCCC-cccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 13 SPNNTIYINNLN-EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 13 ~~~~~l~V~nLp-~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++++|||+||| ..+++++ |+++|+.||.|.+|.+.++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~----L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDR----VFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHH----HHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHH----HHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 467899999999 7999999 7799999999999988765 47999999999999999999999999999999999
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
+++.+.. ............ .... .+... .. .....+. ........+++
T Consensus 76 ~s~~~~~-~p~~~~~~~~~~--~~~~---------------------~~~~~---~~--~r~~~~~---~~~~~~~~~p~ 123 (205)
T 3tyt_A 76 VSKQPAI-MPGQSYGLEDGS--CSYK---------------------DFSES---RN--NRFSTPE---QAAKNRIQHPS 123 (205)
T ss_dssp ECSCSCC-CCCSCCBCTTSC--BSEE---------------------ECTTC---TT--CSCSSHH---HHTTSCCCCCC
T ss_pred EccCCcc-CCCcccccccCC--cccc---------------------ccCCC---cc--ccccCcc---cccccccCCCc
Confidence 9875432 000000000000 0000 00000 00 0000000 00001123467
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCe--eEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCe----EeEEEE
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGF--KEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQ----QLLITY 242 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v--~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~----~i~v~~ 242 (245)
.+|||+|||..+++++|+++|+.||.| .++++++++ +|+|||+|.+.++|..|+..|||..+.|+ ++.|+|
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 889999999999999999999999999 899998863 59999999999999999999999999977 577776
Q ss_pred e
Q 025982 243 A 243 (245)
Q Consensus 243 a 243 (245)
|
T Consensus 204 ~ 204 (205)
T 3tyt_A 204 C 204 (205)
T ss_dssp E
T ss_pred c
Confidence 5
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.9e-33 Score=212.50 Aligned_cols=158 Identities=18% Similarity=0.399 Sum_probs=136.3
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CC--CceeEEEEEecCHHHHHHHHHHHcCCccC---C
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TL--KHKGQAWLVFKDVASATAAVEKMQGFPFY---D 85 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~--~~kg~afV~F~~~e~A~~a~~~l~~~~~~---g 85 (245)
.+++|||+|||+++++++ |+++|+.||.|.+|.+.+ ++ .++|||||+|.+.++|.+|++.||+..+. +
T Consensus 2 ~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKD----LRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 468999999999999999 779999999999986543 33 78999999999999999999999998776 5
Q ss_pred ceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 86 KPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPE 165 (245)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
+.+.+.++.....
T Consensus 78 ~~~~~~~~~~~~~------------------------------------------------------------------- 90 (175)
T 3nmr_A 78 HPIQMKPADSEKN------------------------------------------------------------------- 90 (175)
T ss_dssp SCCEEEECGGGCC-------------------------------------------------------------------
T ss_pred cceEEcccccccc-------------------------------------------------------------------
Confidence 6777777543211
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeC---CeEe
Q 025982 166 APAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIG---QQQL 238 (245)
Q Consensus 166 ~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~i 238 (245)
....+.+|||+|||..+++++|+++|++||.|.++.++.++ +|+|||+|.+.++|.+|++.|||..+. +++|
T Consensus 91 -~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 -NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp -SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred -ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 01245679999999999999999999999999999998863 689999999999999999999998777 4999
Q ss_pred EEEEe
Q 025982 239 LITYA 243 (245)
Q Consensus 239 ~v~~a 243 (245)
.|+||
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99998
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.3e-33 Score=211.98 Aligned_cols=155 Identities=21% Similarity=0.354 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
++++|||+|||.++++++ |+++|+.||.|.+|.+.. +|.++|||||+|.+.++|.+|++. +..+.|+.|.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDN----LREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHH----HHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccc
Confidence 568999999999999999 779999999999997664 578999999999999999999994 67889999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++.+.... .+
T Consensus 76 ~~~~~~~~~---------------------------------------------------------------------~~ 86 (167)
T 2cjk_A 76 KRAIPRDEQ---------------------------------------------------------------------DK 86 (167)
T ss_dssp EECCCHHHH---------------------------------------------------------------------HH
T ss_pred ccccchhhc---------------------------------------------------------------------cC
Confidence 887543221 12
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+.+|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|.+|++ ++|..++|++|.|+||+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 4579999999999999999999999999999998753 6899999999999999998 89999999999999986
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.3e-32 Score=212.07 Aligned_cols=175 Identities=20% Similarity=0.373 Sum_probs=139.0
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhccc----C-------CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCC
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQF----G-------TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~----G-------~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~ 81 (245)
..+++|||+|||.++++++ |+++|+.| | .|..+.. +.++|||||+|.+.++|.+|+ .||+.
T Consensus 2 ~~~~~l~V~nLp~~~te~~----l~~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEA----MMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp --CCEEEEESCCTTCCHHH----HHHHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred CceeEEEEcCCCCCCCHHH----HHHHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 3578999999999999999 66899988 5 5666655 456899999999999999999 69999
Q ss_pred ccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 025982 82 PFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS 161 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.+.|+.|.|.++........... .... ..+ .
T Consensus 74 ~~~g~~i~v~~~~~~~~~~~~~~--------------------------------------~~~~-------~~~----~ 104 (198)
T 2yh0_A 74 IFQGQSLKIRRPHDYQPLPGMSE--------------------------------------NPSV-------YVP----G 104 (198)
T ss_dssp EETTEEEEEECCCCCCCCCCSSS--------------------------------------CSSC-------CCT----T
T ss_pred EEcCceEEEeCCCCCCCCCCCcC--------------------------------------CCcC-------CCC----C
Confidence 99999999998765422100000 0000 000 0
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 025982 162 VIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 162 ~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 236 (245)
........+.++|||+|||..+++++|+++|+.||.|.++.+..++ +|+|||+|.++++|..|++.|||..++|+
T Consensus 105 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 184 (198)
T 2yh0_A 105 VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 184 (198)
T ss_dssp SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTE
T ss_pred CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 0011122456789999999999999999999999999999999864 68999999999999999999999999999
Q ss_pred EeEEEEec
Q 025982 237 QLLITYAK 244 (245)
Q Consensus 237 ~i~v~~ak 244 (245)
+|.|+||+
T Consensus 185 ~l~v~~a~ 192 (198)
T 2yh0_A 185 KLLVQRAS 192 (198)
T ss_dssp ECEEEESC
T ss_pred EEEEEECC
Confidence 99999986
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=6.5e-33 Score=209.18 Aligned_cols=154 Identities=22% Similarity=0.419 Sum_probs=135.6
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhccc----C-------CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCC
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQF----G-------TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~----G-------~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~ 81 (245)
.++++|||+|||.++++++ |+++|+.| | .|..+... .++|||||+|.+.++|.+|+ .+|+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~----l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEA----MMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp CGGGEEEEESCCTTCCHHH----HHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred CcccEEEEcCCCcccCHHH----HHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 4578999999999999999 66888888 6 67777654 45899999999999999999 79999
Q ss_pred ccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCC
Q 025982 82 PFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKS 161 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.+.|+.|.|.++.....
T Consensus 74 ~~~g~~i~v~~~~~~~~--------------------------------------------------------------- 90 (172)
T 2g4b_A 74 IFQGQSLKIRRPHDYQP--------------------------------------------------------------- 90 (172)
T ss_dssp EETTEECEEECCSSCCC---------------------------------------------------------------
T ss_pred EecCceeeecCCcccCC---------------------------------------------------------------
Confidence 99999999987543211
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 025982 162 VIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 162 ~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 236 (245)
.....+|||+|||..+++++|+++|++||.|.++.++.++ +|+|||+|.+.++|.+|++.|||..++|+
T Consensus 91 ------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 91 ------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp ------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE
T ss_pred ------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe
Confidence 0125679999999999999999999999999999998874 68999999999999999999999999999
Q ss_pred EeEEEEe
Q 025982 237 QLLITYA 243 (245)
Q Consensus 237 ~i~v~~a 243 (245)
+|.|+||
T Consensus 165 ~l~V~~A 171 (172)
T 2g4b_A 165 KLLVQRA 171 (172)
T ss_dssp ECEEEEC
T ss_pred EEEEEeC
Confidence 9999998
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=2.1e-33 Score=212.57 Aligned_cols=164 Identities=18% Similarity=0.356 Sum_probs=135.2
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+..+.++|||+|||.++++++|++.|..++..++ ..+....++.++|||||+|.+.++|.+|++ ||+..+.|+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 84 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 84 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEE
Confidence 45677899999999999999996644444444444 123344567889999999999999999996 999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.++...... ...
T Consensus 85 v~~~~~~~~~-------------------------------------------------------------------~~~ 97 (175)
T 1fje_B 85 LEKPKGRDSK-------------------------------------------------------------------KVR 97 (175)
T ss_dssp EECCCCSSCS-------------------------------------------------------------------TTG
T ss_pred EecCCCcccc-------------------------------------------------------------------ccc
Confidence 9998653210 012
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEec-CCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE-AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
++.+|||+|||..+++++|+++|+.||.|..+ ... ..+|+|||+|.+.++|.+|+..|||..++|++|+|+||+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46789999999999999999999999998877 111 237999999999999999999999999999999999996
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2e-31 Score=216.78 Aligned_cols=162 Identities=18% Similarity=0.268 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
++.++|||+|||.++++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|+..||+..+.|+.|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQ----FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHH----HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4568999999999999999 77999999999987543 4788999999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.++.+.... ....
T Consensus 169 v~~a~~~~~~------------------------------------------------------------------~~~~ 182 (284)
T 3smz_A 169 VHWTDAGQLT------------------------------------------------------------------PALL 182 (284)
T ss_dssp EEECCGGGCC------------------------------------------------------------------TTTT
T ss_pred EEECCCCCCC------------------------------------------------------------------cccC
Confidence 9998653210 0012
Q ss_pred CCcEEEEeCCCCCC-CHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDT-TPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~-~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+..+|||+|||..+ ++++|+++|+.||.|.++.++.++ +|+|||+|.++++|.+|+..|||..++|++|.|+||+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 46789999999995 999999999999999999998862 6899999999999999999999999999999999986
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=7.6e-31 Score=213.34 Aligned_cols=150 Identities=20% Similarity=0.354 Sum_probs=137.4
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..++++|||+|||.++++++ |+++|+.|| |..|.+ ++++|||||+|.+.++|.+|+..||+..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~----l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 90 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQE----VHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ 90 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHH----HHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE
Confidence 34678999999999999999 779999999 888877 5678999999999999999999999999999999998
Q ss_pred EccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 92 YAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPN 171 (245)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
++ +++
T Consensus 91 ~~---------------------------------------------------------------------------~~~ 95 (284)
T 3smz_A 91 LQ---------------------------------------------------------------------------PTD 95 (284)
T ss_dssp EC---------------------------------------------------------------------------CCS
T ss_pred ec---------------------------------------------------------------------------CCC
Confidence 73 134
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
++|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|..|+..|||..++|++|.|.||+
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 679999999999999999999999999999988753 6899999999999999999999999999999999985
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.2e-31 Score=216.41 Aligned_cols=165 Identities=13% Similarity=0.231 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccC-CeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||+|||..+++++ |+++|+.|| .|..|.+.. .+.++|||||+|.+.++|.+|+..||+..+.|+.|.|
T Consensus 116 ~~~~l~v~nlp~~~t~~~----l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 191 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRN----IRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT 191 (292)
T ss_dssp CSCEEEEECCCTTCCHHH----HHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEECCCCCCCHHH----HHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 478999999999999999 779999999 999987654 4578999999999999999999999999999999999
Q ss_pred EEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 91 QYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPP 170 (245)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
.++.+....... .....+
T Consensus 192 ~~a~~~~~~~~~--------------------------------------------------------------~~~~~~ 209 (292)
T 2ghp_A 192 KVSNPLEKSKRT--------------------------------------------------------------DSATLE 209 (292)
T ss_dssp EECCCC-----------------------------------------------------------------------CCT
T ss_pred EECCCCcccccc--------------------------------------------------------------cccCCC
Confidence 998754331100 001135
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 171 NNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~-~~~~~L~~~f~~~G~v~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+.+|||+|||.. +++++|+++|+.||.|.+|.++.+. +|+|||+|.+.++|.+|+ .|||..|+|++|.|+||
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 678999999999 9999999999999999999998753 589999999999999999 99999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 289 ~~ 290 (292)
T 2ghp_A 289 DK 290 (292)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.3e-30 Score=209.52 Aligned_cols=153 Identities=18% Similarity=0.344 Sum_probs=137.1
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.....+++|||+|||.++|+++ |+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..+||..+.|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEED----FKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHH----HHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 3455678999999999999999 779999999999998854 479999999999999999999999999999999
Q ss_pred EEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 90 IQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAP 169 (245)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
|.++.
T Consensus 90 v~~a~--------------------------------------------------------------------------- 94 (261)
T 3sde_A 90 IRFAT--------------------------------------------------------------------------- 94 (261)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred eeecc---------------------------------------------------------------------------
Confidence 98863
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhC-CCeeC---CeEeEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQ-SLKIG---QQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~-g~~~~---g~~i~v~ 241 (245)
++.+|||+|||..+++++|+++|+.||.|.+|.++.+. +|+|||+|.+.++|.+|+..|| |..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 24569999999999999999999999999999998763 6899999999999999999995 45554 9999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
+++
T Consensus 175 ~~~ 177 (261)
T 3sde_A 175 PME 177 (261)
T ss_dssp ECC
T ss_pred ecc
Confidence 986
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.8e-30 Score=210.01 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=133.9
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCC-CCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT-LKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
...+++++|||+|||.++++++ |+++|+.||.|..|.+..+ ..++|||||+|.+.++|.+|++ +|+..+.|+.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNK----VYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp ------CEEEEEEECTTCCHHH----HHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 3456689999999999999999 7799999999999876542 2358999999999999999996 99999999999
Q ss_pred EEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhhcCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025982 89 RIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQAGMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPA 168 (245)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
.|.++
T Consensus 111 ~v~~~--------------------------------------------------------------------------- 115 (292)
T 2ghp_A 111 IVSHL--------------------------------------------------------------------------- 115 (292)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEEEC---------------------------------------------------------------------------
Confidence 99873
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G-~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+++|||+|||..+++++|+++|+.|| .|.++.++.++ +|||||+|.+.++|..|+..|||..+.|++|.|.||
T Consensus 116 -~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 -TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp -CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 246799999999999999999999999 99999998743 799999999999999999999999999999999997
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
.
T Consensus 195 ~ 195 (292)
T 2ghp_A 195 N 195 (292)
T ss_dssp C
T ss_pred C
Confidence 5
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.91 E-value=3.9e-24 Score=157.58 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=112.1
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHH-cCCccCCceEEEEEccccchHhhhcCCCcccchhhhhhhhhhhhccchhhHhhh
Q 025982 54 TLKHKGQAWLVFKDVASATAAVEKM-QGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEEKGKKRKDQHDANQA 132 (245)
Q Consensus 54 ~~~~kg~afV~F~~~e~A~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (245)
....+|+++|+|.+.++|.+|++.+ |+..+.| .+.+.++............
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~--------------------------- 60 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH--------------------------- 60 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS---------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc---------------------------
Confidence 3467899999999999999999999 9999999 9999887543321000000
Q ss_pred cCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEE
Q 025982 133 GMGLNPAYAGAYGATPPLSQIPYPGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAF 212 (245)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~af 212 (245)
...........+.++|||+|||..+++++|+.+|+.||.|.+|.++.+++||||
T Consensus 61 --------------------------~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~af 114 (150)
T 2i2y_A 61 --------------------------HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAF 114 (150)
T ss_dssp --------------------------CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEE
T ss_pred --------------------------ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEE
Confidence 000001112246688999999999999999999999999999999998789999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 213 VEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 213 V~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
|+|.+.++|..|+..|||..++|++|+|+||+
T Consensus 115 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 115 VEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp EEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred EEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 99999999999999999999999999999986
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=5.7e-23 Score=152.65 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+..+|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|++.|||..++|++|.|+||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999998763 789999999999999999999999999999999999
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 148 ~ 148 (158)
T 2kn4_A 148 R 148 (158)
T ss_dssp C
T ss_pred C
Confidence 7
No 23
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=143.55 Aligned_cols=99 Identities=29% Similarity=0.499 Sum_probs=88.1
Q ss_pred ccCCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 5 VANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
...+..+.+++++|||+|||..+++++|+..|+++|+.||.|..|.+.+++.++|||||+|.+.++|..|+..|||..+.
T Consensus 19 ~~s~~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 19 LGSTPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp ---CCCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 33445667789999999999999999999889999999999999999889999999999999999999999999999999
Q ss_pred CceEEEEEccccchHhhhc
Q 025982 85 DKPMRIQYAKTKSDIIAKA 103 (245)
Q Consensus 85 g~~i~v~~~~~~~~~~~~~ 103 (245)
|+.|+|.|+..+.......
T Consensus 99 gr~l~V~~a~~~~~~~~~~ 117 (127)
T 2a3j_A 99 GNPLVITFSETPQSQVAED 117 (127)
T ss_dssp TSCCEEEECCCCCHHHHCC
T ss_pred CCEEEEEEccCcchhcccc
Confidence 9999999999887755433
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.4e-22 Score=142.38 Aligned_cols=80 Identities=26% Similarity=0.430 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.+++|||+|||+++++++ |+++|+.||.|.+|.+.. .+.++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~----L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKA----LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHH----HHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999 779999999999986554 455899999999999999999999999999999999999
Q ss_pred ccccc
Q 025982 93 AKTKS 97 (245)
Q Consensus 93 ~~~~~ 97 (245)
+.++.
T Consensus 80 a~~~~ 84 (115)
T 4f25_A 80 FKSRK 84 (115)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87643
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=132.18 Aligned_cols=75 Identities=24% Similarity=0.468 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+|+++|+++|+.||.|.++++++++ +|||||+|.++++|.+|++.|||..++|++|+|+|||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56789999999999999999999999999999999754 6899999999999999999999999999999999996
No 26
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=129.92 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCe--eCCeEeEEEEec
Q 025982 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLK--IGQQQLLITYAK 244 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~--~~g~~i~v~~ak 244 (245)
..+|+.+|||+|||..+++++|+++|++||.|.++.+++++ |+|||+|.+.++|..|++.|+|.. +.|++|+|+||+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 34578999999999999999999999999999999998865 899999999999999999999876 789999999997
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 96 ~ 96 (100)
T 3r27_A 96 S 96 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=129.17 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
...+++|||+|||.++|+++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|++|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDE----LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34578999999999999999 77999999999998554 478899999999999999999999999999999999
Q ss_pred EEEEccc
Q 025982 89 RIQYAKT 95 (245)
Q Consensus 89 ~v~~~~~ 95 (245)
+|.||+|
T Consensus 92 ~V~~AkP 98 (99)
T 4fxv_A 92 KVSYARP 98 (99)
T ss_dssp EEEECCB
T ss_pred EEEEeeC
Confidence 9999975
No 28
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=4.5e-21 Score=130.62 Aligned_cols=91 Identities=68% Similarity=1.089 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.+++++|||+|||.++++++|+..|+++|+.||.|..|.+.+++.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 45678899999999999999998878889999999999998888888899999999999999999999999999999999
Q ss_pred EEEccccchHh
Q 025982 90 IQYAKTKSDII 100 (245)
Q Consensus 90 v~~~~~~~~~~ 100 (245)
|.++.+.....
T Consensus 83 v~~a~~~~~~~ 93 (97)
T 1nu4_A 83 IQYAKTDSDII 93 (97)
T ss_dssp EEECSSCCTHH
T ss_pred EEEccCCCccc
Confidence 99998876543
No 29
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-20 Score=125.35 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHh--CCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL--QSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l--~g~~~~g~~i~v~~ak~ 245 (245)
+++++|||+|||..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++.| ++..+.|++|+|+||+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK-NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 577899999999999999999999999999999998874 99999999999999999977 46789999999999973
No 30
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.5e-20 Score=121.73 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+.-|+|+||+..+++++|+++|++||.|.+++++.. +|||||+|.++++|.+|++.|||..++|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3556999999999999999999999999999999886 4999999999999999999999999999999999985
No 31
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=127.75 Aligned_cols=76 Identities=11% Similarity=0.165 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCC--eeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL--KIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~-~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~i~v~~ak~ 245 (245)
.++++|||+|||. .+++++|+++|++||.|.+|.+++++ |+|||+|.+.++|..|++.||+. .|.|++|+|+||++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3678899999999 99999999999999999999999876 89999999999999999999864 59999999999984
No 32
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=128.55 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC--CeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~i~v~~ak~ 245 (245)
+++++|||+|||..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++.|++ ..+.|++|+|+||+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 367889999999999999999999999999999999885 9999999999999999998864 789999999999973
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=127.60 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++..+|||+|||..+++++|+++|++||.|.+|.++.++ +|||||+|.+.++|..|++.|||..+.|++|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 466789999999999999999999999999999998754 689999999999999999999999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
++
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 34
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=126.73 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCC--eeCCeEeEEEEecC
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL--KIGQQQLLITYAKK 245 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~i~v~~ak~ 245 (245)
.+++++|||+|||..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++.|++. .+.|++|+|+||+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3577899999999999999999999999999999998875 99999999999999999988764 58999999999973
No 35
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=122.42 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=75.4
Q ss_pred CCCCCCCe-EEEcCCCcccCHHHHHHHHHHhhccc-CCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 10 NEISPNNT-IYINNLNEKVKIDQLKQSLHAVFKQF-GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~-l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
...+|+.+ |||+|||.++++++|++.|+++|++| |.|..| ++ |+|||.|.+.++|.+|++.|||..+.|++
T Consensus 3 ~~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 3 SGSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp SSCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34567777 99999999999999999999999999 599998 33 99999999999999999999999999999
Q ss_pred EEEEEccccchH
Q 025982 88 MRIQYAKTKSDI 99 (245)
Q Consensus 88 i~v~~~~~~~~~ 99 (245)
|+|.||+..+..
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999887663
No 36
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=125.12 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=80.0
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
++......++|||+|||.++++++|+..|+++|+.||.|..|.+..+...+|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 2 ss~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 2 SSGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34556678899999999999999977777799999999999988765444899999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025982 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 37
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=124.86 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=73.1
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCc--cC
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFP--FY 84 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~--~~ 84 (245)
++....+|+++|||+|||.++++++ |+++|++||.|..|++.+ .||+|||+|.+.++|..|+..|++.. +.
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~----L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEAD----LVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred cccccCCCCcEEEEeCCCCCCCHHH----HHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 4556678899999999999999999 779999999999998764 47999999999999999999999876 77
Q ss_pred CceEEEEEccccc
Q 025982 85 DKPMRIQYAKTKS 97 (245)
Q Consensus 85 g~~i~v~~~~~~~ 97 (245)
|++|.|+|++++.
T Consensus 86 Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 GHPAFVNYSTSQK 98 (100)
T ss_dssp TEEEEEEECSCSC
T ss_pred CcEEEEEeccccc
Confidence 9999999998753
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=122.58 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
.+++++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|..|++.|||..+.|++|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3466789999999999999999999999999999998753 58999999999999999999999999999999999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
||
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 97
No 39
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=2.4e-20 Score=131.06 Aligned_cols=82 Identities=26% Similarity=0.502 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..++++|||+|||..+++++ |+++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEE----MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45689999999999999999 77999999999999988888889999999999999999999999999999999999
Q ss_pred Eccccc
Q 025982 92 YAKTKS 97 (245)
Q Consensus 92 ~~~~~~ 97 (245)
++.+..
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 987543
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=7.6e-20 Score=128.40 Aligned_cols=75 Identities=19% Similarity=0.345 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+++++|+++|+.||.|.+|+++.++ +|||||+|.++++|..|++.|||..++|++|+|.+|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34679999999999999999999999999999998864 6899999999999999999999999999999999986
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=1e-19 Score=120.69 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+++|++||.|..+.++.+ .+|+|||+|.++++|..|++.|||..++|++|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46788999999999999999999999999999999875 2689999999999999999999999999999999999
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
|
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 7
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.7e-19 Score=125.47 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 167 PAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
..+++++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|..|++.|||..++|++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999998753 6899999999999999999999999999999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
|||
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 997
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=126.08 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.++.++|||+|||.++++++ |+++|+.||.|.+|.+. .+++++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~----L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETF----LKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEECCCCCCCHHH----HHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45778999999999999999 77999999999997543 468899999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++....
T Consensus 79 ~V~~a~~~~ 87 (110)
T 3s8s_A 79 HAQLDIKGQ 87 (110)
T ss_dssp EEEECSTTH
T ss_pred EEEECCCCc
Confidence 999986543
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=125.39 Aligned_cols=73 Identities=27% Similarity=0.491 Sum_probs=67.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCC--eeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCC----eeCCeEeEE
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPG--FKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSL----KIGQQQLLI 240 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~--v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~----~~~g~~i~v 240 (245)
.+|||+|||..+|+++|+++|++||. |.+|++++++ +|||||+|.++++|..|++.|||. .++||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 57999999999999999999999995 6789998764 689999999999999999999996 488999999
Q ss_pred EEec
Q 025982 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
+|||
T Consensus 90 ~~Ak 93 (95)
T 2lkz_A 90 DFAK 93 (95)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9998
No 45
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.8e-20 Score=127.40 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=71.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC--CeeCCeEeEEEEecC
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLITYAKK 245 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~i~v~~ak~ 245 (245)
.+++++|||+|||..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++.+++ ..+.|++|+|+||+.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 3577899999999999999999999999999999999885 9999999999999999999874 689999999999973
No 46
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=125.38 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=70.4
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC--CeeCCeEeEEEEec
Q 025982 168 APPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS--LKIGQQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~-~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~i~v~~ak 244 (245)
..++++|||+|||.. +++++|+++|++||.|.+|.+++.+ |||||+|.+.++|..|++.||+ ..|.|++|+|+||+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 346889999999998 9999999999999999999998775 9999999999999999998864 56999999999997
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
+
T Consensus 101 ~ 101 (112)
T 1x4f_A 101 K 101 (112)
T ss_dssp S
T ss_pred c
Confidence 4
No 47
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=119.59 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHh-CCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL-QSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~i~v~~ak 244 (245)
+++++|||+|||..+++++|+++|++||.|.++.+.+++ |+|||+|.+.++|..|++.| ||..+.|++|+|+|||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-QCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-TEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-CEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999999999999999999999999999875 89999999999999999999 9999999999999997
No 48
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=119.44 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.+.++|..|++.|||..++|++|+|.||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356789999999999999999999999999999998863 689999999999999999999999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 74
No 49
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-19 Score=120.74 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+++|+.||.|..+.++.++ +|+|||+|.++++|..|++.|||..+.|++|+|+||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 467889999999999999999999999999999998753 589999999999999999999999999999999999
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 7
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=4.4e-19 Score=117.07 Aligned_cols=74 Identities=26% Similarity=0.382 Sum_probs=70.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.++++|..|++.|||..++|++|+|+||++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 579999999999999999999999999999998763 68999999999999999999999999999999999974
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.6e-19 Score=121.16 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 467889999999999999999999999999999999853 68999999999999999999999999999999999873
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=119.80 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 466889999999999999999999999999999999764 68999999999999999999999999999999999863
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-20 Score=124.47 Aligned_cols=74 Identities=30% Similarity=0.424 Sum_probs=67.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhC-CCeeCCeEeEEEEe
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQ-SLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G-~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~-g~~~~g~~i~v~~a 243 (245)
+++|||+|||..+|+++|+++|+.|| .|.+|++++++ +|||||+|.++++|.+|++.++ +..++|++|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 79999998753 7999999999999999999874 57899999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 6
No 54
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=120.87 Aligned_cols=76 Identities=25% Similarity=0.411 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
++.++|||+|||..+++++|+++|+.||.|..|.+.+++ |||||+|.+.++|..|++.|||..+.|++|+|.||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 467889999999999999999999999999999999875 8999999999999999999999999999999999974
No 55
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=122.76 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=74.8
Q ss_pred cCCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCC--cc
Q 025982 6 ANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF--PF 83 (245)
Q Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~--~~ 83 (245)
.......+++++|||+|||.++++++ |+++|++||.|..|++.++ ||||||+|.+.++|.+|++.|++. .+
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~----L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 6 SGSHHKVSVSPVVHVRGLCESVVEAD----LVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCSCCCCCCCSEEEEESCCSSCCHHH----HHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 34445577899999999999999999 7799999999999987753 799999999999999999988764 58
Q ss_pred CCceEEEEEccccch
Q 025982 84 YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (245)
.|++|.|.|+..+..
T Consensus 79 ~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 79 AGQQAFFNYSTSKRI 93 (104)
T ss_dssp SSSBCEEEECSSSSC
T ss_pred CCEEEEEEEccCccc
Confidence 999999999987544
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=124.68 Aligned_cols=80 Identities=16% Similarity=0.324 Sum_probs=70.4
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccC-CeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHH-cCCccCCceEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAF---KTLKHKGQAWLVFKDVASATAAVEKM-QGFPFYDKPMR 89 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l-~~~~~~g~~i~ 89 (245)
+++|||+|||+++|+++ |+++|+.|| .|.+|++. .+|.++|||||+|.+.++|.+|++.+ ++..+.|++|+
T Consensus 1 S~~i~v~nLp~~~te~~----l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDD----IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHH----HHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 57999999999999999 779999999 78887654 46889999999999999999999877 45789999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+++.
T Consensus 77 V~~a~~~~~ 85 (91)
T 2lxi_A 77 MHYSDPKPK 85 (91)
T ss_dssp EECCCSCCC
T ss_pred EEEcCCCCC
Confidence 999987543
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=122.91 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+..++.++|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKD----IEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4456689999999999999999 779999999999999988888999999999999999999999999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999876543
No 58
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.2e-19 Score=119.94 Aligned_cols=76 Identities=24% Similarity=0.437 Sum_probs=71.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC--CeEeEEEEec
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG--QQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v~~ak 244 (245)
.+++++|||+|||..+++++|+++|++||.|.++.+..+ +|||||+|.+.++|..|++.|||..+. |++|+|+||+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 346678999999999999999999999999999999887 589999999999999999999999999 9999999997
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.8e-19 Score=119.62 Aligned_cols=76 Identities=24% Similarity=0.448 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|++.|||..+.|++|+|+||+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456789999999999999999999999999999999864 5899999999999999999999999999999999986
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=122.87 Aligned_cols=87 Identities=25% Similarity=0.491 Sum_probs=77.5
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCcc
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~ 83 (245)
+.....++.++|||+|||..+++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i 93 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDM----LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 93 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHH----HHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3445567789999999999999999 77999999999998654 4678999999999999999999999999999
Q ss_pred CCceEEEEEccccc
Q 025982 84 YDKPMRIQYAKTKS 97 (245)
Q Consensus 84 ~g~~i~v~~~~~~~ 97 (245)
.|+.|+|.++.++.
T Consensus 94 ~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 94 AGRPMKVGHVTERT 107 (108)
T ss_dssp SSSCCEEECSCSSC
T ss_pred CCEEEEEEEcccCC
Confidence 99999999997754
No 61
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-19 Score=120.81 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=72.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 467889999999999999999999999999999998763 689999999999999999999999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 93 ~~ 94 (103)
T 2cq0_A 93 KP 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 73
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=5.6e-19 Score=119.91 Aligned_cols=76 Identities=21% Similarity=0.416 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
|+++|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.+.++|..|++.|||..++|++|+|.||+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46789999999999999999999999999999998763 6899999999999999999999999999999999997
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=118.95 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
..+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAA----IAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp ---CEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCceEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45678999999999999999 77999999999998654 377899999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025982 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.++.++
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99998764
No 64
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=4.3e-19 Score=120.48 Aligned_cols=81 Identities=19% Similarity=0.433 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
|+++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 1 P~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQ----ILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 578999999999999999 779999999999997764 4788999999999999999999999999999999999
Q ss_pred EEccccch
Q 025982 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.++..
T Consensus 77 ~~a~~~~~ 84 (96)
T 2x1f_A 77 GYSSNSDI 84 (96)
T ss_dssp EECSCSSG
T ss_pred EEcCCCCC
Confidence 99987654
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=120.38 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~----~~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
..+++|||+|||..+++++|+ ++|++||.|.+|.++.++ +|||||+|.+.++|..|++.|||..+.|++|+|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999999999999999 999999999999999764 68999999999999999999999999999999999
Q ss_pred ecC
Q 025982 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 87 a~~ 89 (96)
T 2dgx_A 87 ATG 89 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 973
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=123.49 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
...++|||+|||..+++++|+.+|+.||.|..+.++.++ +|||||+|.+.++|.+|++.|||..++|++|+|+||+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 467889999999999999999999999999999998753 68999999999999999999999999999999999973
No 67
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=7.2e-19 Score=120.07 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--------VRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~--------v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g 235 (245)
++.++|||+|||..+++++|+++|+.||.|.. +.++.++ +|||||+|.+.++|..|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46788999999999999999999999999999 9988763 6899999999999999999999999999
Q ss_pred eEeEEEEec
Q 025982 236 QQLLITYAK 244 (245)
Q Consensus 236 ~~i~v~~ak 244 (245)
++|+|+||+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999996
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=7.7e-19 Score=123.27 Aligned_cols=77 Identities=23% Similarity=0.452 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++.++|||+|||..+++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 466789999999999999999999999999999998864 589999999999999999999999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 103 ~~ 104 (115)
T 2cpz_A 103 RS 104 (115)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 69
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=118.95 Aligned_cols=77 Identities=16% Similarity=0.326 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 356789999999999999999999999999999999863 689999999999999999999999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 73
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=6.6e-19 Score=116.77 Aligned_cols=80 Identities=31% Similarity=0.523 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
...+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHH----HHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHH----HHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 356789999999999999999 77999999999998654 56788999999999999999999999999999999
Q ss_pred EEEEEcc
Q 025982 88 MRIQYAK 94 (245)
Q Consensus 88 i~v~~~~ 94 (245)
|+|.+++
T Consensus 79 l~v~~ak 85 (85)
T 3mdf_A 79 IRVNLAK 85 (85)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999974
No 71
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.3e-18 Score=122.06 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=72.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 467889999999999999999999999999999999864 689999999999999999999999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 93 ~~ 94 (115)
T 2dgo_A 93 TR 94 (115)
T ss_dssp SC
T ss_pred cC
Confidence 73
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=6.7e-19 Score=116.20 Aligned_cols=78 Identities=26% Similarity=0.458 Sum_probs=71.6
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
+.+|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 1 t~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDET----LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHH----HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 46899999999999999 77999999999988654 468899999999999999999999999999999999999
Q ss_pred Ecccc
Q 025982 92 YAKTK 96 (245)
Q Consensus 92 ~~~~~ 96 (245)
++.++
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 99765
No 73
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=119.26 Aligned_cols=83 Identities=23% Similarity=0.452 Sum_probs=74.9
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
+....++.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNND----LYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHH----HHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 445567789999999999999999 779999999999987765 4778999999999999999999999999999
Q ss_pred CceEEEEEcc
Q 025982 85 DKPMRIQYAK 94 (245)
Q Consensus 85 g~~i~v~~~~ 94 (245)
|+.|+|.+++
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 74
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=119.57 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.++++|..|++.|||..+.|++|+|+||+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 467889999999999999999999999999999999864 6899999999999999999999999999999999997
No 75
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=120.85 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEEcCHHHHHHHHHHh-CCCeeCCeEeEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSL-QSLKIGQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~i~v~ 241 (245)
.++++|||+|||..+++++|+.+|+.||.|..|.++.+. +|||||+|.+.++|..|+..| ||..|.|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 466789999999999999999999999999999998872 799999999999999999999 9999999999999
Q ss_pred EecC
Q 025982 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
||+.
T Consensus 93 ~a~~ 96 (107)
T 2cph_A 93 WADS 96 (107)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9973
No 76
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=1.5e-18 Score=119.75 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCC---eEeEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQ---QQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g---~~i~v~ 241 (245)
+++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 467889999999999999999999999999999999864 5899999999999999999999999997 999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
||+
T Consensus 93 ~a~ 95 (105)
T 2dnh_A 93 FAD 95 (105)
T ss_dssp ESC
T ss_pred ECc
Confidence 996
No 77
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.5e-19 Score=120.78 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 467889999999999999999999999999999998864 689999999999999999999999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 93 ~~ 94 (105)
T 1x5u_A 93 SA 94 (105)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 78
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=119.27 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=76.9
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
+..+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++ ||+..+.
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGIPHNCGETE----LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CCCCCSSCCEEEEESCCSSCCHHH----HHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 345567789999999999999999 779999999999997764 57789999999999999999999 9999999
Q ss_pred CceEEEEEccccch
Q 025982 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 78 g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 78 GKKVEVKRAEPRDS 91 (99)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CeEEEEEECCCCcc
Confidence 99999999987544
No 79
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=119.93 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
...++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEED----LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 356789999999999999999 779999999999987654 6788999999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025982 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++.++..
T Consensus 80 l~V~~a~~~~~ 90 (99)
T 1whw_A 80 LHVLPSTIKKE 90 (99)
T ss_dssp EEEEECCCCST
T ss_pred EEEEEcCCCcc
Confidence 99999987654
No 80
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=121.44 Aligned_cols=88 Identities=23% Similarity=0.439 Sum_probs=78.1
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCcc
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~ 83 (245)
.+.....+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+
T Consensus 4 ~~~~~~~~~~~l~v~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 4 GSSGMASDEGKLFVGGLSFDTNEQS----LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp SCCCCCCCCSEEEEESCCTTCCHHH----HHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3445567789999999999999999 779999999999987765 567899999999999999999999999999
Q ss_pred CCceEEEEEccccch
Q 025982 84 YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (245)
.|+.|+|.++.+...
T Consensus 80 ~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 80 DGRQIRVDQAGKSSD 94 (102)
T ss_dssp TSCCCEEEEEECCCC
T ss_pred CCeEEEEEECCCCCC
Confidence 999999999976544
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-18 Score=119.63 Aligned_cols=76 Identities=18% Similarity=0.397 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.+..+. +|||||+|.+.++|..|++.||+..|.|++|+|+||+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 466889999999999999999999999999999997753 6899999999999999999999999999999999986
No 82
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=119.11 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467889999999999999999999999999999998754 689999999999999999999999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 86 ~~ 87 (99)
T 1whw_A 86 TI 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 83
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=118.32 Aligned_cols=83 Identities=30% Similarity=0.561 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.+++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDM----LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 35679999999999999999 779999999999987654 47789999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025982 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.++..
T Consensus 78 ~V~~a~~~~~ 87 (95)
T 2dnz_A 78 RVGHVTERLD 87 (95)
T ss_dssp EEEESSCCCC
T ss_pred EEEEcccccC
Confidence 9999977544
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.6e-19 Score=119.30 Aligned_cols=85 Identities=20% Similarity=0.380 Sum_probs=75.9
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCcc
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~ 83 (245)
....+..++++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..||+..+
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERD----LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 82 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHH----HHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3445567789999999999999999 77999999999998655 3578899999999999999999999999999
Q ss_pred CCceEEEEEccc
Q 025982 84 YDKPMRIQYAKT 95 (245)
Q Consensus 84 ~g~~i~v~~~~~ 95 (245)
.|+.|+|.+++.
T Consensus 83 ~g~~l~v~~a~~ 94 (95)
T 2cqc_A 83 DGRRIRVSGPSS 94 (95)
T ss_dssp TTEEEEEECCSC
T ss_pred CCEEEEEEecCC
Confidence 999999999864
No 85
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=121.60 Aligned_cols=88 Identities=28% Similarity=0.449 Sum_probs=78.2
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCcc
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~ 83 (245)
.+.....+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+
T Consensus 4 ~~~~~~~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 4 GSSGMATTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp CSSCSCCCCSCEEEESCCSSCCHHH----HHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred CcCCcCCCCCEEEEeCCCCCCCHHH----HHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3445567889999999999999999 779999999999987654 477899999999999999999999999999
Q ss_pred CCceEEEEEccccch
Q 025982 84 YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (245)
.|+.|+|.++.+...
T Consensus 80 ~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 80 FGRTIRVNLAKPMRI 94 (102)
T ss_dssp TTEEEEEEECCCCCC
T ss_pred CCcEEEEEeCCCCCC
Confidence 999999999977544
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=122.37 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC--CccCCceE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG--FPFYDKPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~--~~~~g~~i 88 (245)
...++++|||+|||.++++++ |+++|++||.|.+|++.++ ||||||+|.+.++|.+|++.+++ ..+.|++|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~d----L~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGE----VISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHH----HHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 356789999999999999999 7799999999999988764 79999999999999999998864 78999999
Q ss_pred EEEEccccch
Q 025982 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.++..
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999976544
No 87
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=119.09 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=73.4
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHc--CCccCCc
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ--GFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~--~~~~~g~ 86 (245)
....+++++|||+|||.++++++ |+++|+.||.|..|.+.++ ||||||+|.+.++|.+|++.|+ +..+.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~----L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETE----VIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHH----HHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 34567889999999999999999 7799999999999987764 8999999999999999999775 6779999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
+|.|.|+..+..
T Consensus 82 ~l~V~~a~~~~~ 93 (101)
T 2cq1_A 82 PIYIQYSNHKEL 93 (101)
T ss_dssp ECEEEECSCSSC
T ss_pred EEEEEEcCcccC
Confidence 999999986544
No 88
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=1.4e-18 Score=118.08 Aligned_cols=75 Identities=13% Similarity=0.267 Sum_probs=70.2
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 168 APPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 168 ~~~~~~l~v~nl~~-~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+++++|||+|||. .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..|++.|||..++|++|+|+||+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 35778999999998 99999999999999999999984 59999999999999999999999999999999999973
No 89
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.6e-19 Score=120.58 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-CCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.......+.++|||+|||..+++++ |+++|+.||.|..|.+.. .+.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVL----ILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHH----HHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHH----HHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 3455667789999999999999999 779999999999987665 34478999999999999999999999999999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.+...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 83 KEVKVNWATTPSS 95 (103)
T ss_dssp EEEEEEECCCTTC
T ss_pred CeEEEEECCCCcc
Confidence 9999999987543
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=5.2e-19 Score=115.44 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
..+.-|||+||++.+|+++ |+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.+
T Consensus 5 ~~~~wL~VgNL~~~~te~~----L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPT----LRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCCCEEEEECCCTTCCCHH----HHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CccceEEEeCCCccCCHHH----HHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 4577899999999999999 779999999999998754 689999999999999999999999999999999999
Q ss_pred cc
Q 025982 93 AK 94 (245)
Q Consensus 93 ~~ 94 (245)
|.
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 91
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=120.19 Aligned_cols=88 Identities=25% Similarity=0.389 Sum_probs=77.8
Q ss_pred CCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-CCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 7 NQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.......+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDER----LRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHH----HHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3444566789999999999999999 779999999999885543 67889999999999999999999999999999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.++..
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 83 KPLYVALAQRKEE 95 (103)
T ss_dssp SBCEEEECSSCCC
T ss_pred cEEEEEEeccccc
Confidence 9999999987654
No 92
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=123.59 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=70.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+++|||+|||..+++++|+.+|++||.|..|.+++.+ |+|||+|.+.++|..|+..|||..|.|++|+|+||+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46789999999999999999999999999999988765 8999999999999999999999999999999999973
No 93
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=120.51 Aligned_cols=87 Identities=28% Similarity=0.420 Sum_probs=77.9
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
...+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPL----LWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CcccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 344566789999999999999999 779999999999987665 6789999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025982 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.+...
T Consensus 84 g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 84 GKPIRVNKASAHNK 97 (105)
T ss_dssp SCBCEEEETTTTSC
T ss_pred CeEEEEEECCCCCc
Confidence 99999999977544
No 94
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.7e-19 Score=120.32 Aligned_cols=77 Identities=26% Similarity=0.413 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.++++|..|++.|||..|.|++|+|+||
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467889999999999999999999999999999998853 689999999999999999999999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 95
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-19 Score=124.45 Aligned_cols=76 Identities=24% Similarity=0.414 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
+.+++|||+|||..+++++|+.+|+.||.|.++.+.+.+ |||||+|.+.++|..|+..|||..++|++|+|.||+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK-GCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 356789999999999999999999999999999998665 9999999999999999999999999999999999973
No 96
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=120.14 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=77.8
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHHHHHH-cCCc
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAAVEKM-QGFP 82 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a~~~l-~~~~ 82 (245)
......+.++|||+|||..+++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..| |+..
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQRE----IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred ccccCCCCCEEEEeCCCCcCCHHH----HHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 345567789999999999999999 779999999999997643 6778999999999999999999999 9999
Q ss_pred cCCceEEEEEccccch
Q 025982 83 FYDKPMRIQYAKTKSD 98 (245)
Q Consensus 83 ~~g~~i~v~~~~~~~~ 98 (245)
+.|+.|+|.++.++..
T Consensus 84 ~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 84 LYGRRLVLEWADSEVT 99 (107)
T ss_dssp SSSCBCEEEECCCCCC
T ss_pred ECCCEEEEEeCCCCCC
Confidence 9999999999987644
No 97
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=118.95 Aligned_cols=84 Identities=19% Similarity=0.370 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+. +++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEE----LEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3456689999999999999999 77999999999987554 36788999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025982 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++.++.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999998754
No 98
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.7e-19 Score=120.82 Aligned_cols=87 Identities=24% Similarity=0.400 Sum_probs=77.7
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
+.++..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDS----LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345567789999999999999999 779999999999987664 4788999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025982 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.....
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 82 GRELRVQVARYGRR 95 (103)
T ss_dssp TBCCEEEECSSCCS
T ss_pred CcEEEEEECCcCCC
Confidence 99999999976543
No 99
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.3e-19 Score=120.17 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.+ .+|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46678999999999999999999999999999999876 2689999999999999999999999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 90 ~ 90 (102)
T 2cqb_A 90 K 90 (102)
T ss_dssp C
T ss_pred C
Confidence 6
No 100
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=120.75 Aligned_cols=77 Identities=16% Similarity=0.318 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+++++|||+|||..+++++|+.+|+.||.|..+.++.++ +|||||+|.+.++|..|++.|||..++|++|+|+||
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 466789999999999999999999999999999998753 689999999999999999999999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 74
No 101
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=9.7e-19 Score=121.25 Aligned_cols=74 Identities=31% Similarity=0.514 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.++++|||+|||..+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..|+..|||..++|++|.|+||+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 467889999999999999999999999999999998 59999999999999999999999999999999999873
No 102
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=118.67 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC---CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA---KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~---~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.+ .+|||||+|.+.++|..|+..|||..|.|++|.|.||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 35678999999999999999999999999999999875 268999999999999999999999999999999999863
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=116.38 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=69.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.++|||+|||..+++++|+++|+.||.|..+.+. +|||||+|.+.++|..|++.|||..+.|++|+|.||+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 467889999999999999999999999999999998 48999999999999999999999999999999999863
No 104
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=117.36 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|++ ||+..+.|++|+|.||
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 466889999999999999999999999999999998753 6899999999999999998 9999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 87 ~ 87 (99)
T 2dgs_A 87 E 87 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 105
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=120.03 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCC--ccCCce
Q 025982 11 EISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF--PFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~--~~~g~~ 87 (245)
...++++|||+|||. ++++++ |+++|++||.|.+|++.++ +|||||+|.+.++|..|++.||+. .+.|++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~d----L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQ----LLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHH----HHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHH----HHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 356789999999999 999999 7799999999999988754 689999999999999999999864 589999
Q ss_pred EEEEEccccch
Q 025982 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++.....
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 1x4d_A 84 VRVHLSQKYKR 94 (102)
T ss_dssp CEEEEECCCTT
T ss_pred EEEEECCCCCC
Confidence 99999976443
No 106
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=119.52 Aligned_cols=87 Identities=26% Similarity=0.461 Sum_probs=77.4
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..||+..|.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETD----LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHH----HHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 334466789999999999999999 77999999999998654 36789999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025982 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 84 g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 84 HLILNVEWAKPSTN 97 (103)
T ss_dssp TEECEEEESSCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999977544
No 107
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.1e-18 Score=117.45 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
...+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKM----LKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHH----HHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 356789999999999999999 779999999999986554 778999999999999999999999999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 80 v~~a~~~~~ 88 (92)
T 2dgv_A 80 VRIDRNASG 88 (92)
T ss_dssp CEECSCCSS
T ss_pred EEEcCCCCC
Confidence 999876543
No 108
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=119.80 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..+.|++|.|+||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456889999999999999999999999999999998753 689999999999999999999999999999999999
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 91 ~ 91 (103)
T 2dnm_A 91 R 91 (103)
T ss_dssp S
T ss_pred C
Confidence 7
No 109
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=9e-19 Score=124.53 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=70.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEecC--CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEA--KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~----~~f~~~G~v~~v~~~~~--~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
+++++|||+|||..+++++|+ .+|++||.|.+|.+..+ .+|||||+|.+.++|..|+..|||..|.|++|+|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 467889999999999999876 79999999999988753 379999999999999999999999999999999999
Q ss_pred ecC
Q 025982 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 974
No 110
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.4e-18 Score=116.95 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC---CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK---PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~---~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.++++|||+|||..+++++|+++|+.||.|.++.+..+. +|||||+|.+.++|..|++.|||..+.|++|+|.||+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 466889999999999999999999999999999998742 68999999999999999999999999999999999873
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.1e-19 Score=129.59 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|+||+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45779999999999999999999999999999998753 6899999999999999999999999999999999997
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 126 ~ 126 (135)
T 2lea_A 126 Y 126 (135)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=120.73 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
+..++|||+|||..+++++|+.+|+.||.|.+|.++.++ |||||+|.+.++|..|+..|||..|+|++|+|.||+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 356789999999999999999999999999999999884 9999999999999999999999999999999999973
No 113
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.8e-18 Score=119.00 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|..|++.|||..|.|++|.|+||+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 457789999999999999999999999999999998864 5899999999999999999999999999999999986
No 114
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=2.3e-18 Score=118.81 Aligned_cols=86 Identities=20% Similarity=0.361 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCC-
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD- 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g- 85 (245)
.....++++|||+|||.++++++ |+++|+.||.|..|.+. +++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEED----VLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred cccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 34456789999999999999999 77999999999997554 367889999999999999999999999999998
Q ss_pred --ceEEEEEccccch
Q 025982 86 --KPMRIQYAKTKSD 98 (245)
Q Consensus 86 --~~i~v~~~~~~~~ 98 (245)
+.|+|.++.+...
T Consensus 85 ~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 85 ASSSLVVKFADTDKE 99 (105)
T ss_dssp CSSCCEEEESCSSCC
T ss_pred CCccEEEEECccCcc
Confidence 9999999987654
No 115
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=2.1e-18 Score=120.07 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=71.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..+.++.++ +|||||+|.+.++|..|+..|||..++|++|+|+||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 467889999999999999999999999999999998764 689999999999999999999999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 104 ~ 104 (110)
T 1oo0_B 104 F 104 (110)
T ss_dssp E
T ss_pred c
Confidence 6
No 116
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=117.82 Aligned_cols=82 Identities=37% Similarity=0.559 Sum_probs=73.4
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE--------EEeC---CCCCceeEEEEEecCHHHHHHHHHH
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------ILAF---KTLKHKGQAWLVFKDVASATAAVEK 77 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i~~~---~~~~~kg~afV~F~~~e~A~~a~~~ 77 (245)
.....+.++|||+|||.++++++ |+++|+.||.|.. |.+. .+|.++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIES----VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHH----HHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 34566789999999999999999 7799999999987 6543 4688999999999999999999999
Q ss_pred HcCCccCCceEEEEEcc
Q 025982 78 MQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 78 l~~~~~~g~~i~v~~~~ 94 (245)
|||..+.|+.|+|.+|+
T Consensus 83 l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 83 FDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HTTCBSSSSBCEEEECC
T ss_pred hCCCEeCCcEEEEEecC
Confidence 99999999999999874
No 117
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=119.61 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..++|++|+|+||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 457889999999999999999999999999999998753 589999999999999999999999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 101 ~ 101 (106)
T 1p27_B 101 F 101 (106)
T ss_dssp E
T ss_pred c
Confidence 6
No 118
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=1.8e-18 Score=122.48 Aligned_cols=72 Identities=25% Similarity=0.297 Sum_probs=67.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeE-EEEEEcCHHHHHHHHHHhCCCeeCC--eEeEEEEec
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI-AFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAK 244 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~i~v~~ak 244 (245)
.|||+||+..+++++|+++|++||.|.+|.++..++|+ |||+|.+.++|..|++.|||..|.| ++|+|+|||
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 46699999999999999999999999999998766787 9999999999999999999999998 999999997
No 119
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=120.07 Aligned_cols=82 Identities=18% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
..++++|||+|||..+++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEED----IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 45578999999999999999 77999999999998655 358889999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++.++.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999987653
No 120
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=5.7e-19 Score=120.76 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCc------ccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCc
Q 025982 12 ISPNNTIYINNLNE------KVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~------~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~ 82 (245)
...+++|||+|||. ++++++ |+++|+.||.|..|.+. .+|+++|||||+|.+.++|.+|++.|||..
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~----L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKA----LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHH----HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHH----HHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 34568999999999 999999 77999999999998654 468899999999999999999999999999
Q ss_pred cCC-ceEEEEEccccch
Q 025982 83 FYD-KPMRIQYAKTKSD 98 (245)
Q Consensus 83 ~~g-~~i~v~~~~~~~~ 98 (245)
+.| +.|+|.++.+...
T Consensus 79 ~~g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 79 LDLKHRLFLYTMKDVER 95 (100)
T ss_dssp SSSSCBCEEEESHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 999 9999999976443
No 121
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=1.4e-18 Score=134.20 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCC-CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVP-HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~-~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+++++|||+||| ..+++++|+++|+.||.|.+|+++++++|+|||+|.++++|..|++.|||..+.|++|+|.||+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 367899999999 8999999999999999999999999888999999999999999999999999999999999986
No 122
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=3.2e-18 Score=118.48 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|.+|.++.++ +|+|||+|.+.++|..|++.|||..+.|++|+|+||+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 467889999999999999999999999999999999763 6899999999999999999999999999999999986
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-18 Score=118.35 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCC-----eEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-----QQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-----~~i~v~~ak 244 (245)
..++|||+|||..+++++|+++|+.||.|..|.++.+ |||||+|.+.++|..|++.|||..|.| ++|.|.+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 5678999999999999999999999999999999987 899999999999999999999999999 999999986
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 92 ~ 92 (108)
T 1x4c_A 92 P 92 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=118.61 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEE-EEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEV-RMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v-~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++++|||+|||..+++++|+.+|+.||.|..+ .++.++ +|||||+|.++++|..|+..|||..+.|++|+|+||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57889999999999999999999999999998 888762 689999999999999999999999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 125
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=118.26 Aligned_cols=76 Identities=28% Similarity=0.415 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 56789999999999999999999999999999998632 5899999999999999999999999999999999
Q ss_pred EecC
Q 025982 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
||+.
T Consensus 84 ~a~~ 87 (98)
T 2cpf_A 84 ISER 87 (98)
T ss_dssp CSSC
T ss_pred EccC
Confidence 9873
No 126
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.1e-18 Score=124.82 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467789999999999999999999999999999998753 689999999999999999999999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 124 ~ 124 (129)
T 2kxn_B 124 I 124 (129)
T ss_dssp S
T ss_pred c
Confidence 6
No 127
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.8e-19 Score=119.39 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC------CCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK------TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~------~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEET----LKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH 78 (98)
T ss_dssp CCCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 5678999999999999999 779999999999986553 347899999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++.+...
T Consensus 79 ~l~V~~a~~~~~ 90 (98)
T 2cpf_A 79 KLEVRISERATK 90 (98)
T ss_dssp ECEEECSSCSSC
T ss_pred EEEEEEccCCCC
Confidence 999999876543
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=121.89 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=70.5
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEccc
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~~ 95 (245)
++|||+|||.++++++ |+++|+.||.|..|.+..+ ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGE----LERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHH----HHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 5899999999999999 7799999999999988766 789999999999999999999999999999999999876
Q ss_pred cc
Q 025982 96 KS 97 (245)
Q Consensus 96 ~~ 97 (245)
..
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=121.93 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC--CccCCc
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG--FPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~--~~~~g~ 86 (245)
....+++++|||+|||.++++++ |+++|+.||.|..|.+.++ ||||||+|.+.++|.+|++.+++ ..+.|+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~d----L~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGE----VISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHH----HHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred cccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 34567789999999999999999 7799999999999987754 79999999999999999998874 689999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
+|+|.++.++..
T Consensus 98 ~l~V~~a~~k~~ 109 (119)
T 2ad9_A 98 PIYIQFSNHKEL 109 (119)
T ss_dssp CCEEEECSSSSC
T ss_pred EEEEEEccCCCC
Confidence 999999976544
No 130
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=117.80 Aligned_cols=87 Identities=22% Similarity=0.351 Sum_probs=76.7
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCC-CCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT-LKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~-~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+..+ +.++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPD----LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHH----HHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 345566789999999999999999 7799999999999876543 34789999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++.++..
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cq3_A 84 KIEVNNATARVM 95 (103)
T ss_dssp ECEEEECCSSCC
T ss_pred EEEEEEcccCCC
Confidence 999999987544
No 131
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=115.09 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC------CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA------KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~------~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
..++|||+|||..+++++|+++|+.||.|.++.++.+ .+|+|||+|.+.++|..|++.|||..++|++|+|++|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3567999999999999999999999999999998764 3689999999999999999999999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 6
No 132
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=122.55 Aligned_cols=83 Identities=31% Similarity=0.474 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKM----LKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHH----HHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 45678999999999999999 779999999998886554 778899999999999999999999999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 80 V~~a~~~~~ 88 (116)
T 2fy1_A 80 VEQAKKPSF 88 (116)
T ss_dssp EEECCCSSC
T ss_pred EEECCCCCC
Confidence 999986544
No 133
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=118.01 Aligned_cols=80 Identities=16% Similarity=0.344 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCe--EEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCc----
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI--LEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFP---- 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v--~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~---- 82 (245)
...=.+|||+|||+.+|+++ |+++|++||.| .+|++. .+|.+||||||+|.+.++|.+|++.||+..
T Consensus 6 ~~~m~tlfV~nL~~~~tee~----L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDS----IMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHH----HHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CCccCEEEEeCCCCcCCHHH----HHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 34457899999999999999 77999999964 456543 468899999999999999999999999974
Q ss_pred cCCceEEEEEccc
Q 025982 83 FYDKPMRIQYAKT 95 (245)
Q Consensus 83 ~~g~~i~v~~~~~ 95 (245)
+.|++|.|+||+.
T Consensus 82 i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 82 IDGKTIGVDFAKS 94 (95)
T ss_dssp ETTEEEEEEECCC
T ss_pred ECCEEEEEEEccC
Confidence 7899999999864
No 134
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=2.4e-18 Score=120.70 Aligned_cols=87 Identities=23% Similarity=0.391 Sum_probs=77.5
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
...+..+.++|||+|||..+++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.||+..+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTED----IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345567789999999999999999 77999999999998654 36889999999999999999999999999999
Q ss_pred CceEEEEEccccch
Q 025982 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 84 GRQIRTNWATRKPP 97 (115)
T ss_dssp TEECEEEESSCCCC
T ss_pred CEEEEEEEccCCCC
Confidence 99999999977544
No 135
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1.1e-18 Score=120.96 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC-CeeEEEEec-CCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFP-GFKEVRMVE-AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G-~v~~v~~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+++++|+++|+.|| .|..+.+.. .++|||||+|.+.++|..|++.|||..|.|++|+|.+|+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 467899999999999999999999999 899999864 457999999999999999999999999999999999986
No 136
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=120.67 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHH---HHhccCCCeeEEEEecCC--------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 169 PPNNILFVQNVPHDTTPMALQ---MFFSQFPGFKEVRMVEAK--------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~---~~f~~~G~v~~v~~~~~~--------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
...++|||+|||..+++++|+ ++|++||.|..|.++.++ +|||||+|.+.++|..|++.|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356789999999999999999 999999999999998753 389999999999999999999999999999
Q ss_pred eEEEEec
Q 025982 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|+||+
T Consensus 93 l~V~~a~ 99 (111)
T 2cpi_A 93 LKASLGT 99 (111)
T ss_dssp EEEESCC
T ss_pred EEEEecc
Confidence 9999986
No 137
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=118.00 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+..++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|..|++.|||..|.|++|+|.||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456789999999999999999999999999766666532 699999999999999999999999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 138
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-18 Score=114.35 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|..+.+++ +||||+|.+.++|..|+..|||..+.|++|+|+||+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS---SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4678899999999999999999999999999999974 599999999999999999999999999999999986
No 139
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.5e-18 Score=121.82 Aligned_cols=86 Identities=24% Similarity=0.418 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
....++.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.||+..|.|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQD----LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHH----HHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcCCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34456679999999999999999 77999999999887544 378899999999999999999999999999999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.++..
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 9999999977544
No 140
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=2.5e-18 Score=128.33 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457889999999999999999999999999999999863 699999999999999999999999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 150 ~ 150 (165)
T 1rk8_A 150 F 150 (165)
T ss_dssp E
T ss_pred c
Confidence 6
No 141
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=119.83 Aligned_cols=86 Identities=21% Similarity=0.382 Sum_probs=77.1
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHc------
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQ------ 79 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~------ 79 (245)
..+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEA----LGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCcCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 34566789999999999999999 779999999999997764 57789999999999999999999999
Q ss_pred CCccCCceEEEEEccccch
Q 025982 80 GFPFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 80 ~~~~~g~~i~v~~~~~~~~ 98 (245)
+..+.|+.|+|.++.++..
T Consensus 85 ~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CEESSSCEEEEECCCCCCC
T ss_pred CcEEcCEEEEEEECCCCcc
Confidence 9999999999999987544
No 142
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=117.78 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=78.3
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
......+.++|||+|||.++++++ |+++|+.|+.|..+....++.++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 8 PNARSQPSKTLFVKGLSEDTTEET----LKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp TSSSSCCCSSEEEECCCTTCCHHH----HHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCccCHHH----HHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 445567789999999999999999 7799999988777777778999999999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025982 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++.++..
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 VTLDWAKPKGE 94 (102)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEecCCCC
Confidence 99999987654
No 143
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=118.41 Aligned_cols=76 Identities=26% Similarity=0.391 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhC------CCeeCCeE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQ------SLKIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~------g~~~~g~~ 237 (245)
.++++|||+|||..+++++|+.+|+.||.|.+|.++.++ +|||||+|.+.++|..|+..|| |..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 356789999999999999999999999999999999752 6899999999999999999999 99999999
Q ss_pred eEEEEec
Q 025982 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|.||+
T Consensus 93 l~v~~a~ 99 (111)
T 1x4h_A 93 LKVDLAV 99 (111)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999986
No 144
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=6.6e-19 Score=120.46 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=70.4
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCC-eE
Q 025982 170 PNNILFVQNVPH------DTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQ 237 (245)
Q Consensus 170 ~~~~l~v~nl~~------~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g-~~ 237 (245)
.+++|||+|||. .+++++|+.+|++||.|.+|.++.++ +|||||+|.++++|..|++.|||..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 99999999999999999999998753 6999999999999999999999999999 99
Q ss_pred eEEEEec
Q 025982 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|.+|+
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9999985
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=120.86 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=69.8
Q ss_pred CCCcEEEE--eCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCee-----CCeEeEEE
Q 025982 169 PPNNILFV--QNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI-----GQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v--~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~-----~g~~i~v~ 241 (245)
.++.+||| +||+..+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++.|||..+ .|++|+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-gfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-PYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-SCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 35678999 6699999999999999999999999988764 9999999999999999999999988 69999999
Q ss_pred EecC
Q 025982 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
||++
T Consensus 102 ~a~~ 105 (114)
T 2cq2_A 102 FVEK 105 (114)
T ss_dssp EESC
T ss_pred eccc
Confidence 9974
No 146
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-18 Score=115.93 Aligned_cols=81 Identities=27% Similarity=0.562 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC--Cce
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY--DKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~--g~~ 87 (245)
....++++|||+|||.++++++ |+++|+.||.|..|.+... +|||||+|.+.++|.+|++.||+..+. |+.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAA----LAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHH----HHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 4466789999999999999999 7799999999999988754 789999999999999999999999999 999
Q ss_pred EEEEEccccc
Q 025982 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 147
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=118.88 Aligned_cols=77 Identities=26% Similarity=0.314 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCee--------EEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFK--------EVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~--------~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g 235 (245)
.++++|||+|||..+++++|+++|+.||.|. .|.++.++ +|||||+|.+.++|..|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678899999999999999999999999998 68888763 6899999999999999999999999999
Q ss_pred eEeEEEEecC
Q 025982 236 QQLLITYAKK 245 (245)
Q Consensus 236 ~~i~v~~ak~ 245 (245)
++|+|.||+.
T Consensus 93 ~~l~V~~a~~ 102 (113)
T 2cpe_A 93 SKLKVSLARK 102 (113)
T ss_dssp EECEEECSSC
T ss_pred CEEEEEECCC
Confidence 9999999874
No 148
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-18 Score=114.60 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC--CCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQF--PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~--G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.++++|||+|||..+++++|+.+|+.| |.|.++.+. +|||||+|.+.++|..|+..|||..|.|++|+|.||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 467889999999999999999999999 999998875 48999999999999999999999999999999999973
No 149
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=117.09 Aligned_cols=82 Identities=21% Similarity=0.430 Sum_probs=73.2
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
....+.++|||+|||..+++++ |+++|+.||.|..|.+. +++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEI----LYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 3456689999999999999999 77999999999998654 35788999999999999999999999999999999
Q ss_pred EEEEEccc
Q 025982 88 MRIQYAKT 95 (245)
Q Consensus 88 i~v~~~~~ 95 (245)
|+|.+++.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999753
No 150
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=118.53 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=75.2
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
..+...+.++|||+|||.++++++ |+++|+.||.|. +....++.++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEET----LQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHH----HHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 344566789999999999999999 779999999984 333367889999999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025982 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++.++..
T Consensus 83 l~v~~a~~~~~ 93 (101)
T 2fc9_A 83 IRLELQGPRGS 93 (101)
T ss_dssp EEEEECSSCCC
T ss_pred EEEEEcCCCCC
Confidence 99999977543
No 151
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.8e-18 Score=119.41 Aligned_cols=83 Identities=19% Similarity=0.325 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
...++++|||+|||..+++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDE----IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 345678999999999999999 77999999999999765 36788999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025982 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++.++.
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999987653
No 152
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=120.41 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=71.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
..++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..|.|++|+|+||+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 45789999999999999999999999999999999864 68999999999999999999999999999999999974
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=7.7e-18 Score=117.18 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~-~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..+++|||+|||.. +++++|+.+|+.||.|..|.+ .+|||||+|.+.++|..|++.|||..+.|++|+|+||+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 35678999999999 999999999999999999998 45899999999999999999999999999999999997
No 154
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=118.02 Aligned_cols=85 Identities=16% Similarity=0.340 Sum_probs=75.3
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeE-EEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL-EILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~-~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
.....++++|||+|||.++++++ |+++|+.||.|. .|.+. .++.++|||||+|.+.++|.+|++.||+..+.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENF----ISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHH----HHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCCCCCccEEEEeCCCCCCCHHH----HHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 44566789999999999999999 779999999998 77543 46789999999999999999999999999999
Q ss_pred Cce----EEEEEccccc
Q 025982 85 DKP----MRIQYAKTKS 97 (245)
Q Consensus 85 g~~----i~v~~~~~~~ 97 (245)
|+. |+|.|+.+..
T Consensus 79 g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 79 GATPAKRFKLNYATYSG 95 (99)
T ss_dssp SCSSCEECCEEETTCCS
T ss_pred CCCcceeEEEeecCCCC
Confidence 999 9999987643
No 155
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=120.41 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=75.8
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-CCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
........++|||+|||.++++++ |+++|+.||.|..|.+.. .+.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPD----LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHH----HHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CccCCCCCCEEEEECCCCcCCHHH----HHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 445566789999999999999999 779999999999987664 345789999999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025982 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|+|.++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998764
No 156
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=118.63 Aligned_cols=82 Identities=30% Similarity=0.521 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE-EeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI-LAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i-~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.++++|||+|||.++++++ |+++|+.||.|..| .+.. ++.++|||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKL----LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHH----HHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4679999999999999999 77999999999877 5553 67789999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025982 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.++..
T Consensus 79 ~v~~a~~~~~ 88 (96)
T 1x5t_A 79 TVSYAFKKDS 88 (96)
T ss_dssp EEEESCCCCC
T ss_pred EEEEecccCC
Confidence 9999977544
No 157
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=3.2e-18 Score=118.29 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCee---CCeEeEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKI---GQQQLLI 240 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~i~v 240 (245)
.+.++|||+|||..+++++|+.+|+.||.|.+|.++.++ +|||||+|.+.++|..|++.|||..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 467889999999999999999999999999999998853 68999999999999999999999987 8999999
Q ss_pred EEec
Q 025982 241 TYAK 244 (245)
Q Consensus 241 ~~ak 244 (245)
.||+
T Consensus 91 ~~a~ 94 (106)
T 2dgp_A 91 KPAD 94 (106)
T ss_dssp EECC
T ss_pred EECC
Confidence 9986
No 158
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.9e-18 Score=118.10 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=73.8
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.+...++++|||+|||..+++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 45567789999999999999999 77999999999887544 4788999999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025982 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|+|.++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 99999975
No 159
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=3.8e-18 Score=119.69 Aligned_cols=76 Identities=24% Similarity=0.481 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+.+|+.||.|..+.++.+. +|||||+|.+.++|..|+..|||..+.|+.|.|+||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 356789999999999999999999999999999998753 6899999999999999999999999999999999986
No 160
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=116.18 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=68.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
..+++|||+|||..+++++|+.+|+.||.|. +.++.+ .+|||||+|.+.++|..|++.|||..|.|++|+|.||+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3567899999999999999999999999996 555543 369999999999999999999999999999999999863
No 161
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=117.40 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCC----CCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT----LKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~----~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.+..+.++|||+|||.++++++ |+++|+.|| |..|.+..+ +.++|||||+|.+.++|.+|+ .||+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEES----IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHH----HHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCEEEEeCCCCcCCHHH----HHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 3455679999999999999999 779999999 999877653 788999999999999999999 899999999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.++..
T Consensus 84 ~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 KRIRVDVADQAQD 96 (104)
T ss_dssp EECEEEECCCCCC
T ss_pred cEEEEEEccCCCC
Confidence 9999999987544
No 162
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=117.57 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCee-EEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeE----e
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFK-EVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ----L 238 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~-~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~----i 238 (245)
.++++|||+|||..+++++|+++|+.||.|. .+.++.++ +|||||+|.+.++|..|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3678899999999999999999999999999 99998764 589999999999999999999999999999 9
Q ss_pred EEEEec
Q 025982 239 LITYAK 244 (245)
Q Consensus 239 ~v~~ak 244 (245)
+|+||+
T Consensus 87 ~v~~a~ 92 (99)
T 2div_A 87 KLNYAT 92 (99)
T ss_dssp CEEETT
T ss_pred EEeecC
Confidence 999987
No 163
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-17 Score=120.77 Aligned_cols=77 Identities=21% Similarity=0.378 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
...++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999998753 689999999999999999999999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 73
No 164
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=9.1e-18 Score=115.41 Aligned_cols=74 Identities=23% Similarity=0.472 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.|| |..|.++.++ +|||||+|.+.++|..|+ .|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568899999999999999999999997 9999999764 689999999999999999 89999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 91 ~ 91 (103)
T 2dng_A 91 E 91 (103)
T ss_dssp C
T ss_pred c
Confidence 6
No 165
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=5e-18 Score=115.36 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=71.1
Q ss_pred CCCCCCCCCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 8 QGNEISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.....+++++|||+|||. ++++++ |+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|+
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~----L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKED----LFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHH----HHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHH----HHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 445577899999999998 999999 77999999999999884 79999999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025982 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|+|.+++.+
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 9999998764
No 166
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=3e-18 Score=118.45 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCcc--
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPF-- 83 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~-- 83 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKD----LKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHH----HHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 34566789999999999999999 779999999999997765 577999999999999999999999999887
Q ss_pred -CCceEEEEEccccch
Q 025982 84 -YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 -~g~~i~v~~~~~~~~ 98 (245)
.|+.|+|.++.+...
T Consensus 83 ~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 83 GMNRPIQVKPADSESR 98 (106)
T ss_dssp TCSSCCEEEECCCCSC
T ss_pred CCCceEEEEECCcccc
Confidence 889999999976543
No 167
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=114.85 Aligned_cols=79 Identities=20% Similarity=0.386 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
...+.++|||+|||.++++++ |+++|+.||.|..|.+. +|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQE----IRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHH----HHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 456789999999999999999 77999999999999876 689999999999999999999999999999999
Q ss_pred EEccccch
Q 025982 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.++..
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99977544
No 168
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=119.80 Aligned_cols=83 Identities=13% Similarity=0.294 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHH---HhhcccCCeEEEEeCCCC------CceeEEEEEecCHHHHHHHHHHHcCC
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLH---AVFKQFGTILEILAFKTL------KHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~---~~F~~~G~v~~i~~~~~~------~~kg~afV~F~~~e~A~~a~~~l~~~ 81 (245)
.....++|||+|||.++++++ |. ++|+.||.|..|.+.++. .++|||||+|.+.++|.+|++.||+.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~----l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPE----VLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHH----HHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cccCCCEEEEECCCCCCCHHH----HHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 455688999999999999999 77 999999999998766432 46699999999999999999999999
Q ss_pred ccCCceEEEEEccccc
Q 025982 82 PFYDKPMRIQYAKTKS 97 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~ 97 (245)
.+.|++|+|.++.++.
T Consensus 87 ~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 87 VVDGRTLKASLGTTKY 102 (111)
T ss_dssp EETTEEEEEESCCCCS
T ss_pred EECCEEEEEEeccccc
Confidence 9999999999998765
No 169
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=114.11 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCC---CC-ceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKT---LK-HKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~---~~-~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
..++|||+|||.++++++ |+++|+.||.|..|.+..+ +. ++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDH----IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHH----HHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 468999999999999999 7799999999999876543 23 789999999999999999999999999999999
Q ss_pred EEEcccc
Q 025982 90 IQYAKTK 96 (245)
Q Consensus 90 v~~~~~~ 96 (245)
|.++.+.
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998764
No 170
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.5e-18 Score=113.27 Aligned_cols=81 Identities=16% Similarity=0.323 Sum_probs=70.3
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
......+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++ +++..+.
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 78 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKD----LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD 78 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC
Confidence 345567789999999999999999 77999999999998654 468899999999999999999997 6888899
Q ss_pred CceEEEEEc
Q 025982 85 DKPMRIQYA 93 (245)
Q Consensus 85 g~~i~v~~~ 93 (245)
|+.|.|.+|
T Consensus 79 g~~i~v~~A 87 (87)
T 3s7r_A 79 GRVIDPKKA 87 (87)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 999999875
No 171
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=119.54 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=69.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
++|||+|||..+++++|+++|+.||.|..+.++.+.+|||||+|.+.++|..|++.|||..+.|++|+|+||+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 4699999999999999999999999999999998866999999999999999999999999999999999986
No 172
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=2.4e-18 Score=116.98 Aligned_cols=77 Identities=26% Similarity=0.443 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEecC--CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEA--KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~----~~f~~~G~v~~v~~~~~--~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
+++++|||+|||..+++++|+ .+|+.||.|..|.+... .+|||||+|.+.++|..|+..|||..++|++|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 467899999999999999999 99999999999998752 258999999999999999999999999999999999
Q ss_pred ecC
Q 025982 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 86 a~~ 88 (97)
T 1nu4_A 86 AKT 88 (97)
T ss_dssp CSS
T ss_pred ccC
Confidence 973
No 173
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=113.93 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+.++|||+|||..+++++|+.+|+.||.|..+.+++ +||||+|.+.++|..|++.|||..+.|++|+|.||+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK---DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS---SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4567899999999999999999999999999999974 5999999999999999999999999999999999873
No 174
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=2.4e-18 Score=123.01 Aligned_cols=85 Identities=22% Similarity=0.410 Sum_probs=76.2
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.....++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..|.|
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERD----LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHH----HHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34466789999999999999999 779999999999987654 57889999999999999999999999999999
Q ss_pred ceEEEEEccccc
Q 025982 86 KPMRIQYAKTKS 97 (245)
Q Consensus 86 ~~i~v~~~~~~~ 97 (245)
+.|+|.++.++.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 999999987653
No 175
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.7e-18 Score=118.04 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
..+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|++.+++ .|.|++|+|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3467889999999999999999999999999999999863 68999999999999999999998 89999999999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 93 a~ 94 (116)
T 2cqd_A 93 AY 94 (116)
T ss_dssp ST
T ss_pred cc
Confidence 85
No 176
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.8e-18 Score=115.95 Aligned_cols=74 Identities=24% Similarity=0.447 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
.+.++|||+|||..+++++|+.+|+.|| |..|.++.++ +|||||+|.+.++|..|+ .|||..|.|++|.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568899999999999999999999999 9999998753 689999999999999999 8999999999999999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 91 a~ 92 (104)
T 1wi8_A 91 AD 92 (104)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 177
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=118.29 Aligned_cols=81 Identities=21% Similarity=0.399 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
.+....++|||+|||.++|+++ |.++|+.||.|.+|.+.. .|.++|||||+|.+.++|.+|+. +|+..+.|+.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~----L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDD----IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHH----HHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred cccCCCCEEEEECCCCCCCHHH----HHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 3455678999999999999999 779999999999986654 47799999999999999999999 8999999999
Q ss_pred EEEEEccc
Q 025982 88 MRIQYAKT 95 (245)
Q Consensus 88 i~v~~~~~ 95 (245)
|.|.++..
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 99998755
No 178
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=7e-19 Score=117.98 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=66.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFP--GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G--~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+|||+|||..+++++|+++|+.|| .|.++.++.++ +|||||+|.+.++|..|++.|||..++|++|+|++|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3599999999999999999999999 99999998863 6899999999999999999999999999999999985
No 179
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.6e-18 Score=117.96 Aligned_cols=84 Identities=23% Similarity=0.378 Sum_probs=75.0
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.....++++|||+|||.++++++ |+++|+.||.|..|.+. +++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKK----LKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 34566789999999999999999 77999999999987543 4678899999999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025982 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|+|.++...
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 9999998653
No 180
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.1e-18 Score=116.22 Aligned_cols=73 Identities=16% Similarity=0.351 Sum_probs=68.9
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~-~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+++++|||+|||. .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..|+..|||..+.|++|+|.||+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 5678999999998 99999999999999999999985 5899999999999999999999999999999999996
No 181
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=4e-18 Score=121.57 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=71.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..|.|++|.|+||
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 457889999999999999999999999999999998764 789999999999999999999999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 100 ~ 100 (126)
T 3ex7_B 100 F 100 (126)
T ss_dssp E
T ss_pred c
Confidence 6
No 182
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=5.3e-18 Score=113.36 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=69.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++|||+|||..+++++|+++|+.||.|.++.++.++ +|+|||+|.+.++|..|+ .|||..+.|++|+|++|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999998763 789999999999999999 899999999999999987
No 183
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=112.99 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=72.4
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHH-cCCccCCc
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKM-QGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l-~~~~~~g~ 86 (245)
+.+...+.++|||+|||..+++++ |+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..| |+..+.|+
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~----l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETD----LRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHH----HHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHH----HHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 445567789999999999999999 779999999999998775 4799999999999999999998 99999999
Q ss_pred eEEEEEcc
Q 025982 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
+|+|.|++
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 184
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=119.54 Aligned_cols=74 Identities=20% Similarity=0.430 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+ .|||..|.|++|.|.||+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 45789999999999999999999999999999998643 689999999999999999 999999999999999986
No 185
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.4e-18 Score=120.51 Aligned_cols=81 Identities=25% Similarity=0.383 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTD----LASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHH----HHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3456679999999999999999 779999999999987764 578899999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025982 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|+|++++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999874
No 186
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=119.34 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCcc-cCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC--CccCCc
Q 025982 10 NEISPNNTIYINNLNEK-VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG--FPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~-~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~--~~~~g~ 86 (245)
.+..++++|||+|||.+ +++++ |+++|+.||.|..|++.+ +||||||+|.+.++|.+|++.||+ ..+.|+
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~----L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSA----VLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHH----HHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred ccCCCCCEEEEeCCCCccCCHHH----HHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 44678999999999998 99999 779999999999998864 489999999999999999998864 568999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
+|+|.++..+..
T Consensus 93 ~l~V~~a~~~~~ 104 (112)
T 1x4f_A 93 CVKVDLSEKYKK 104 (112)
T ss_dssp CCEEEEECSCSS
T ss_pred EEEEEECccccc
Confidence 999999976544
No 187
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=119.00 Aligned_cols=86 Identities=35% Similarity=0.518 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeE--------EEEeC---CCCCceeEEEEEecCHHHHHHHHHH
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL--------EILAF---KTLKHKGQAWLVFKDVASATAAVEK 77 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~--------~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~ 77 (245)
..+..+.++|||+|||.++++++ |+++|+.||.|. .|.+. .++.++|||||+|.+.++|.+|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDD----LADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHH----HHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCCCCHHH----HHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 34566789999999999999999 779999999998 46544 4688999999999999999999999
Q ss_pred HcCCccCCceEEEEEccccch
Q 025982 78 MQGFPFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 78 l~~~~~~g~~i~v~~~~~~~~ 98 (245)
||+..|.|+.|+|.++.++..
T Consensus 85 l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 85 FDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp HTTCEETTEECEEECSSCCCC
T ss_pred cCCCccCCCEEEEEECCCCCC
Confidence 999999999999999987654
No 188
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=119.15 Aligned_cols=75 Identities=24% Similarity=0.448 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC------CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK------PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~------~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
...++|||+|||..+++++|+.+|+.|| |.+|.++.++ +|||||+|.+.++|..|+ .|||..|+|++|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4678899999999999999999999999 9999998764 689999999999999999 8999999999999999
Q ss_pred ecC
Q 025982 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 873
No 189
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=6.3e-19 Score=118.21 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=65.8
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccC--CeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFG--TILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
.+|||+|||.++++++ |+++|+.|| .|.+|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~----l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDED----LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHH----HHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHH----HHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 4799999999999999 779999999 88777543 47899999999999999999999999999999999999
Q ss_pred EEccccch
Q 025982 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.+...
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99876543
No 190
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=5.6e-18 Score=116.48 Aligned_cols=73 Identities=26% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++ ++||||+|.+.++|..|++.|||..|.|++|.|.||+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 356789999999999999999999999999999987 4799999999999999999999999999999999986
No 191
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=116.20 Aligned_cols=84 Identities=17% Similarity=0.420 Sum_probs=75.5
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
.....++.++|||+|||..+++++ |+++|+.||.|..|.+.++ +|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEE----MRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHH----HHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHH----HHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 345567789999999999999999 7799999999999988754 799999999999999999999999999999
Q ss_pred EEEEEccccch
Q 025982 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|+|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpj_A 81 LRVRFACHSAS 91 (99)
T ss_dssp CEEEESSCCSC
T ss_pred EEEEEcCCCCC
Confidence 99999987544
No 192
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.9e-18 Score=117.00 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++.++|||+|||..+++++|+++|+.||.|..+.++.++ +|||||+|.++++|.+|++.|||..|.|++|+|.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356889999999999999999999999999777766532 689999999999999999999999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 193
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=117.74 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+|+++|+++|++||.|.+|.++.++ +|||||+|.++++|..|+. ++|..+.|++|.|.+++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 56789999999999999999999999999999999753 7999999999999999999 99999999999999875
No 194
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=111.86 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=64.3
Q ss_pred CCCcE-EEEeCCCCCCCHHH----HHHHhccCC-CeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 169 PPNNI-LFVQNVPHDTTPMA----LQMFFSQFP-GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~-l~v~nl~~~~~~~~----L~~~f~~~G-~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
+|+.+ |||+|||..+++++ |+.+|++|| .|.+|. . |+|||.|.+.++|.+|++.|||+.++||+|+|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----g-G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----G-CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----T-TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----c-CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 35555 89999999999988 558999994 999882 2 9999999999999999999999999999999999
Q ss_pred ecC
Q 025982 243 AKK 245 (245)
Q Consensus 243 ak~ 245 (245)
|+.
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 974
No 195
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=117.88 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcc-cCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCc-cC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQ-FGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFP-FY 84 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~-~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~-~~ 84 (245)
..+..++++|||+|||.++++++ |+++|+. ||.|..|.+. +++.++|||||+|.+.++|.+|++.||+.. +.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGM----LYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHH----HHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCCCCCCcEEEEeCCCCCCCHHH----HHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 34566789999999999999999 7799999 9999987544 378899999999999999999999999999 99
Q ss_pred CceEEEEEccccch
Q 025982 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 79 g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 79 SKPVRLSVAIPKAS 92 (104)
T ss_dssp SSCCCCCBCCCCCS
T ss_pred CEeEEEEEccCCCc
Confidence 99999999876544
No 196
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=121.07 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=70.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+.+|+.||.|..+.++.++ +|||||+|.++++|.+|++.|||..|.|++|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 467889999999999999999999999999999998762 699999999999999999999999999999999987
No 197
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-18 Score=114.49 Aligned_cols=83 Identities=19% Similarity=0.235 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE---EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~---i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
......++|||+|||.++++++ |+++|+.||.|.. +....++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~----l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDE----ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHH----HHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3455678999999999999999 7799999998864 35566888999999999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025982 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|+|.++...
T Consensus 86 ~l~V~~a~~~ 95 (98)
T 2cqp_A 86 KVKLVLGSGP 95 (98)
T ss_dssp ECEEEESSCS
T ss_pred EEEEEEcCCC
Confidence 9999998754
No 198
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=117.71 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCccc------CHHHHHHHHHHhhcccCCeEEEEeC-CCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 12 ISPNNTIYINNLNEKV------KIDQLKQSLHAVFKQFGTILEILAF-KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~------~~~~l~~~l~~~F~~~G~v~~i~~~-~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
...+++|||+|||..+ ++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|+..|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~----l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNV----IHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHH----HHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHH----HHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4447899999999999 6788 77999999999998765 47889999999999999999999999999999
Q ss_pred Cc-eEEEEEcccc
Q 025982 85 DK-PMRIQYAKTK 96 (245)
Q Consensus 85 g~-~i~v~~~~~~ 96 (245)
|+ +|+|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998653
No 199
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.7e-18 Score=119.06 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccC-CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
......+|||+|||.++++++ |+++|+.|| .|..+.+.. +.++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 24 ~p~~~~~l~VgnLp~~~te~d----L~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQD----LKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHH----HHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHH----HHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 455678999999999999999 679999999 898887753 35789999999999999999999999999999999
Q ss_pred EEEcccc
Q 025982 90 IQYAKTK 96 (245)
Q Consensus 90 v~~~~~~ 96 (245)
|+++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998654
No 200
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=1.4e-17 Score=110.89 Aligned_cols=74 Identities=15% Similarity=0.283 Sum_probs=68.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|++||.|.++.++.++ +|||||+|.+.++|..|++ +++..+.|++|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 466789999999999999999999999999999998753 6899999999999999996 5888999999999987
No 201
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=5.8e-17 Score=115.18 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|..|++.|||..+.|++|+|+||+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 467889999999999999999999999999999998863 6899999999999999999999999999999999986
No 202
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=117.20 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhcc-CCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCe-eCCeEeEEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQ-FPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLK-IGQQQLLITY 242 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~-~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~-~~g~~i~v~~ 242 (245)
.++++|||+|||..+++++|+.+|+. ||.|.+|.++.++ +|||||+|.+.++|..|++.|||.. +.|++|.|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45678999999999999999999999 9999999999863 6899999999999999999999999 9999999999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 87 a~ 88 (104)
T 2dhg_A 87 AI 88 (104)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 203
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-17 Score=111.77 Aligned_cols=74 Identities=30% Similarity=0.382 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.++++|||+|| .+++++|+++|+.||.|.+|.+... +|||||+|.+.++|..|+..|||..+.|++|+|.||+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 35678999996 8999999999999999999999655 48999999999999999999999999999999999863
No 204
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=3.9e-17 Score=115.13 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=67.9
Q ss_pred CCCcE--EEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeE-EEEEEcCHHHHHHHHHHhCCCeeCC--eEeEEEEe
Q 025982 169 PPNNI--LFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGI-AFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYA 243 (245)
Q Consensus 169 ~~~~~--l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~i~v~~a 243 (245)
+++.+ |||+||+..+++++|+.+|++||.|.+|.++.. .|+ |||+|.+.++|..|++.|||..|.| ++|+|+||
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35555 578999999999999999999999999999765 486 9999999999999999999999987 69999999
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
|
T Consensus 100 k 100 (124)
T 2e5i_A 100 R 100 (124)
T ss_dssp S
T ss_pred c
Confidence 7
No 205
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=9.6e-18 Score=115.28 Aligned_cols=84 Identities=25% Similarity=0.385 Sum_probs=73.7
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
..+..+.++|||+|||.++++++ |+++|+.|| |..|.+. .++.++|||||+|.+.++|.+|+ .||+..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGD----IDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHH----HHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCeEEEEeCCCCCCCHHH----HHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 34456689999999999999999 779999997 8887554 35789999999999999999999 799999999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.+...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 RSLRVDIAEGRKQ 95 (103)
T ss_dssp EECEEEECCCCCC
T ss_pred eEEEEEEecCCCC
Confidence 9999999976543
No 206
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=117.20 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=69.5
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
......++|||+|||.++++++ |+++|+.|| |..|.+.. +|+++|||||+|.+.++|.+|+ .||+..+.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEES----IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSH----HHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCCCCCcEEEEeCCCCCCCHHH----HHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 4456689999999999999999 779999999 99987664 5778999999999999999999 799999999
Q ss_pred ceEEEEEcccc
Q 025982 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
+.|+|.++.++
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999998764
No 207
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=116.89 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
....+.++|||+|||..+++++ |+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||+..+.|+.|+
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~----l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDE----LKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHH----HHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456689999999999999999 77999999999777 56788999999999999999999999999999999999
Q ss_pred EEEccccc
Q 025982 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|.++.++.
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99987654
No 208
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=119.04 Aligned_cols=82 Identities=20% Similarity=0.425 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.++|||+|||..+++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQ----LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHH----HHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCccEEEEeCCCCcCCHHH----HHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 3468999999999999999 77999999999887554 4788899999999999999999999999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999987654
No 209
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=9.1e-18 Score=123.84 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=69.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFP--GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G--~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
..++|||+|||..+++++|+++|+.|| .|..|+++.++ +|||||+|.+.++|..|++.|||..|+|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 99999998763 68999999999999999999999999999999999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 210
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.5e-18 Score=115.95 Aligned_cols=82 Identities=20% Similarity=0.366 Sum_probs=70.6
Q ss_pred CCCCCCCCCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 8 QGNEISPNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.....+++++|||+|||. .+++++ |+++|+.||.|..|.+. +|||||+|.+.++|.+|+..||+..+.|+
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~~t~~~----l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 3 EMHNIPPKSRLFIGNLPLKNVSKED----LFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp ------CCEEEEEESSTTSCCCHHH----HHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred ccccCCCCCEEEEeCCCcccCCHHH----HHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 345567899999999998 999999 77999999999999874 78999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++.+...
T Consensus 74 ~l~V~~a~~~~~ 85 (96)
T 2kvi_A 74 KLILEVSSSNAR 85 (96)
T ss_dssp TBCEEEEECCCC
T ss_pred EEEEEEcCcCCC
Confidence 999999876543
No 211
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-18 Score=115.21 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..+.++.++ +|||||+|.+.++|..|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 367889999999999999999999999999999998763 689999999999999999999999999999999887
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 212
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=117.21 Aligned_cols=76 Identities=28% Similarity=0.402 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+.++|||+|||..+++++|+.+|+.||.|..+.++.++ +|||||+|.+.++|..|++.|||..+.|++|+|.||+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45779999999999999999999999999999998763 6999999999999999999999999999999999986
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 213
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=117.45 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=75.1
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
...+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..+|+ .|.
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDAS----LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHH----HHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 345566789999999999999999 779999999999997765 477899999999999999999999998 899
Q ss_pred CceEEEEEcccc
Q 025982 85 DKPMRIQYAKTK 96 (245)
Q Consensus 85 g~~i~v~~~~~~ 96 (245)
|+.|+|.++...
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999999998654
No 214
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=114.59 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
..++++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQD----LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHH----HHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 45789999999999999999 779999999999986553 57889999999999999999999999999999999
Q ss_pred EEEEcc
Q 025982 89 RIQYAK 94 (245)
Q Consensus 89 ~v~~~~ 94 (245)
++.++.
T Consensus 78 ~~~~~~ 83 (85)
T 1x4e_A 78 KQSGPS 83 (85)
T ss_dssp CSSCCC
T ss_pred eecCCC
Confidence 887653
No 215
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=1e-17 Score=119.38 Aligned_cols=85 Identities=18% Similarity=0.358 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
....++++|||+|||..+++++ |.++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEED----IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3455678999999999999999 77999999999998765 3678899999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|.|.++.++..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999976543
No 216
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=112.81 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=65.5
Q ss_pred CCeEEEcCCCccc------CHHHHHHHHHHhhcccCCeEEEEeC-CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc-
Q 025982 15 NNTIYINNLNEKV------KIDQLKQSLHAVFKQFGTILEILAF-KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK- 86 (245)
Q Consensus 15 ~~~l~V~nLp~~~------~~~~l~~~l~~~F~~~G~v~~i~~~-~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~- 86 (245)
+++|||+|||..+ ++++ |+++|+.||.|..|.+. .+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~----l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNV----IHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHH----HHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHH----HHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 4789999999999 6688 77999999999998765 4788999999999999999999999999999999
Q ss_pred eEEE
Q 025982 87 PMRI 90 (245)
Q Consensus 87 ~i~v 90 (245)
+|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 8876
No 217
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=110.41 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
....+|||+|||..+++++|+++|+.| .|..|.++.+. +|+|||+|.+.++|..|+. |||..|+|++|.|.+|+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356789999999999999999999999 99999998763 6899999999999999999 99999999999999986
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 3
No 218
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=6e-18 Score=144.44 Aligned_cols=75 Identities=31% Similarity=0.425 Sum_probs=70.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+.++|||+|||..+++++|..+|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|++|.|.||+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 56789999999999999999999999999999998753 7999999999999999999999999999999999986
No 219
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=112.67 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEE-EEecCC-CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEV-RMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v-~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+++++|+.+|+.||.|..+ .++.++ ++.|||+|.+.++|..|+..|||..+.|++|+|.||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45779999999999999999999999999999 477664 5679999999999999999999999999999999986
No 220
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=116.14 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=70.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 168 APPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
..+.++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+.. |+..|.|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3467889999999999999999999999999999999864 58999999999999999998 99999999999999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 92 a~ 93 (105)
T 2dh8_A 92 CT 93 (105)
T ss_dssp SC
T ss_pred cc
Confidence 86
No 221
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=2.2e-17 Score=122.15 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|+||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356889999999999999999999999999999998763 589999999999999999999999999999999999
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 117 ~ 117 (156)
T 1h2v_Z 117 A 117 (156)
T ss_dssp S
T ss_pred C
Confidence 6
No 222
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=4e-18 Score=115.41 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
..++.++|||+|||.++++++ |+++|+.||.|..+ ....++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDE----ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp ----CEEEEEECCCTTCCHHH----HHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 344579999999999999999 77999999988643 45567889999999999999999999999999999999
Q ss_pred EEEEEccc
Q 025982 88 MRIQYAKT 95 (245)
Q Consensus 88 i~v~~~~~ 95 (245)
|+|+++.+
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99998753
No 223
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=116.26 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=69.0
Q ss_pred CCcEEEEeCCCCCC------CHHHHHHHhccCCCeeEEEEecC---CCeEEEEEEcCHHHHHHHHHHhCCCeeCCe-EeE
Q 025982 170 PNNILFVQNVPHDT------TPMALQMFFSQFPGFKEVRMVEA---KPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLL 239 (245)
Q Consensus 170 ~~~~l~v~nl~~~~------~~~~L~~~f~~~G~v~~v~~~~~---~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~i~ 239 (245)
.+++|||+|||..+ ++++|+.+|++||.|..|.+++. .+|||||+|.+.++|..|+..|||..|.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 46789999999988 78999999999999999998842 269999999999999999999999999998 999
Q ss_pred EEEec
Q 025982 240 ITYAK 244 (245)
Q Consensus 240 v~~ak 244 (245)
|.+|+
T Consensus 94 V~~a~ 98 (105)
T 2nlw_A 94 VNLFT 98 (105)
T ss_dssp EECSC
T ss_pred EEEcc
Confidence 99985
No 224
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.2e-18 Score=116.85 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
.....++|||+|||..+++++ |+++|+.||.|..|.+..+ +|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQL----MRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHH----HHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999 7799999999999988765 799999999999999999999999999999999
Q ss_pred EEccccch
Q 025982 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.++..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99987654
No 225
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=120.08 Aligned_cols=85 Identities=21% Similarity=0.395 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQ----LRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHH----HHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3456679999999999999999 77999999999998554 4678899999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++.+...
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987544
No 226
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=7.7e-18 Score=116.68 Aligned_cols=80 Identities=24% Similarity=0.515 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
....++++|||+|||.++++++ |+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~----L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESE----LNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHH----HHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHH----HHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4456789999999999999999 77999999999998776 79999999999999999999999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999977543
No 227
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=117.34 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=74.1
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCe-EEEEe--CCCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI-LEILA--FKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v-~~i~~--~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
......+.++|||+|||.++++++ |+++|+.||.| ..|.+ .+++.++|||||+|.+.++|.+|++. |+..|.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 8 EGDVNSAKVCAHITNIPFSITKMD----VLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp CCSCCSCCCEEEEESCCTTSCHHH----HHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCCCCCCccEEEEeCcCCcCCHHH----HHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 334466789999999999999999 77999999999 44543 34788999999999999999999995 999999
Q ss_pred CceEEEEEccccch
Q 025982 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|.|.++..+..
T Consensus 83 gr~i~v~~a~~~~~ 96 (114)
T 2cpy_A 83 GREAFVHVVTLEDM 96 (114)
T ss_dssp TEEEEEEEECHHHH
T ss_pred CeEEEEEECCHHHH
Confidence 99999999976654
No 228
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=117.87 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
...+++|||+|||.++++++ |+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAE----IQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHH----HHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34568999999999999999 779999999999998764 57999999999999999999999999999999999
Q ss_pred Ecccc
Q 025982 92 YAKTK 96 (245)
Q Consensus 92 ~~~~~ 96 (245)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98653
No 229
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=112.57 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=66.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.| .++.+ .+|||||+|.++++|..|+..|||..|.|++|+|+||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 467889999999999999999999999987 34443 26899999999999999999999999999999999986
No 230
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=120.81 Aligned_cols=81 Identities=31% Similarity=0.528 Sum_probs=72.8
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.....+.++|||+|||..+++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~----l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKV----LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHH----HHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCCCCcEEEEEeCCCCCCHHH----HHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34466789999999999999999 779999999999997754 57889999999999999999999999999999
Q ss_pred ceEEEEEc
Q 025982 86 KPMRIQYA 93 (245)
Q Consensus 86 ~~i~v~~~ 93 (245)
+.|+|.+|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999875
No 231
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=112.42 Aligned_cols=86 Identities=16% Similarity=0.334 Sum_probs=75.0
Q ss_pred cccCCCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhccc--CCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCC
Q 025982 4 EVANQGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF--GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~--G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~ 81 (245)
+.........+.++|||+|||..+++++ |+++|+.| |.|..|... +|||||+|.+.++|.+|+..||+.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~ 74 (99)
T 2cpd_A 4 GSSGDEDTMSSVKILYVRNLMLSTSEEM----IEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGK 74 (99)
T ss_dssp CCCCCCSCSSCCCEEEEESCCTTCCHHH----HHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSE
T ss_pred cccccccccCCcCEEEEeCCCCCCCHHH----HHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCC
Confidence 3334445567789999999999999999 77999999 999998764 689999999999999999999999
Q ss_pred ccCCceEEEEEccccch
Q 025982 82 PFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~ 98 (245)
.+.|+.|+|.++.++..
T Consensus 75 ~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 75 VLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp EETTEEEEEECCCCCCC
T ss_pred EeCCcEEEEEECCCCCC
Confidence 99999999999977543
No 232
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-18 Score=119.20 Aligned_cols=84 Identities=27% Similarity=0.513 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCe----EEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI----LEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v----~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.+..++++|||+|||.++++++ |+++|+.||.| ..+... ++.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERD----LVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHH----HHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3355689999999999999999 77999999998 445444 78899999999999999999999999999999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|+|.++.++..
T Consensus 95 ~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 95 KILVIEFGKNKKQ 107 (115)
T ss_dssp CBCEEEECCCCSC
T ss_pred cEEEEEEccCCCC
Confidence 9999999987544
No 233
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=9.6e-18 Score=123.72 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccC--CeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG--TILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
..++|||+|||.++++++ |+++|+.|| .|.+|.+. .+|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~----L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQ----LIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHH----HHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 468999999999999999 779999999 89887653 578999999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
.|.++.++.
T Consensus 130 ~V~~a~~~~ 138 (156)
T 3n9u_C 130 DVRPATRQN 138 (156)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCCCc
Confidence 999997654
No 234
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=111.40 Aligned_cols=80 Identities=18% Similarity=0.329 Sum_probs=72.6
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+. ++||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQE----LRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHH----HHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34566789999999999999999 77999999999999887 4599999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++.+..
T Consensus 74 ~v~~a~~~~ 82 (90)
T 2dnp_A 74 NVELSTKGQ 82 (90)
T ss_dssp EEEESCCCC
T ss_pred EEEECCCCC
Confidence 999997654
No 235
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=114.51 Aligned_cols=83 Identities=14% Similarity=0.332 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCcc----
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPF---- 83 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~---- 83 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQE----LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHH----HHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 4456689999999999999999 779999999999875543 688899999999999999999999999999
Q ss_pred ----CCceEEEEEcccc
Q 025982 84 ----YDKPMRIQYAKTK 96 (245)
Q Consensus 84 ----~g~~i~v~~~~~~ 96 (245)
.+++|.|.|+.+.
T Consensus 96 ~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TSCCCSSCBEEEECCCS
T ss_pred cccCCCCceeEEccCCC
Confidence 5788999998754
No 236
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=114.47 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=73.6
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCC---
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD--- 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g--- 85 (245)
.+.....++|||+|||.++++++ |.++|+.||.|..|.+..+ |||||+|.+.++|.+|++.||+..|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQD----LKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHH----HHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 34456689999999999999999 7799999999999988765 899999999999999999999999999
Q ss_pred --ceEEEEEccccch
Q 025982 86 --KPMRIQYAKTKSD 98 (245)
Q Consensus 86 --~~i~v~~~~~~~~ 98 (245)
+.|+|.++.++..
T Consensus 81 ~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 81 ETAYIRVKVDGPRSP 95 (108)
T ss_dssp CEEEEEEEESSCCSC
T ss_pred cceEEEEEeCCCCCC
Confidence 9999999987543
No 237
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=117.85 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
....++++|||+|||..+++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHH----HHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3456689999999999999999 779999999998876543 6778999999999999999999999999999999
Q ss_pred EEEEEccccc
Q 025982 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|+|.++....
T Consensus 106 l~V~~a~~~~ 115 (124)
T 2kt5_A 106 MDIQLVASQI 115 (124)
T ss_dssp EEEEEECCTT
T ss_pred EEEEEeCCCC
Confidence 9999987643
No 238
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.7e-18 Score=113.86 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=66.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC-CeeCCeEeEEEEecC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPG-FKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS-LKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~-v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g-~~~~g~~i~v~~ak~ 245 (245)
+.++|||+|||..+++++|+++|+.||. |..+.+. . +|||||+|.+.++|..|++.||| ..++|++|+|.||+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K-SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E-TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C-CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 5677999999999999999999999999 6555553 3 58999999999999999999999 999999999999863
No 239
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=117.04 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+.. ++..|+|++|.|.||+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45789999999999999999999999999999999863 68999999999999999997 9999999999999986
No 240
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6e-18 Score=115.01 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.+..++|||+|||.++++++ |+++|+.||.|. +.+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~----l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSD----LKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHH----HHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCcCcHHH----HHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3455689999999999999999 779999999985 3322 346789999999999999999999999999999999
Q ss_pred EEEccccc
Q 025982 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|.++.++.
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99997653
No 241
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=1.1e-17 Score=122.71 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=67.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-CeEEEEEEcCHHHHHHHHHHhCCCeeCC--eEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQ--QQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~i~v~~ak 244 (245)
..|||+||+..+++++|+++|++||.|.+|.++..+ +|+|||+|.+.++|..|++.|||..|.| ++|+|+|||
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 458899999999999999999999999999987653 6899999999999999999999999965 999999997
No 242
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=5.6e-18 Score=121.59 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=69.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeE--EEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCC----eeCCeE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--VRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSL----KIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~--v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~----~~~g~~ 237 (245)
.++++|||+|||..+++++|+++|+.||.|.. |+++.++ +|||||+|.+. +|..|+..|||. .+.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46678999999999999999999999999966 8998865 79999999999 999999999999 999999
Q ss_pred eEEEEec
Q 025982 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|+||+
T Consensus 100 l~V~~a~ 106 (131)
T 2m2b_A 100 INVEFAK 106 (131)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 9999986
No 243
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=5e-18 Score=116.27 Aligned_cols=77 Identities=23% Similarity=0.466 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.+.+++|||+|||.++++++ |+++|+.||.|..|.+. +++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~----l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEAD----LIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHH----HHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHH----HHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45578999999999999999 77999999999999776 458999999999999999999999999999999999
Q ss_pred Eccc
Q 025982 92 YAKT 95 (245)
Q Consensus 92 ~~~~ 95 (245)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9865
No 244
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.4e-17 Score=111.11 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.+++|||+|||..+++++|+++|++| .|.++.+.. .+|||||+|.++++|..|++.|||..++|++|+|.||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR-NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG-GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC-CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45679999999999999999999999 999998864 359999999999999999999999999999999999864
No 245
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=5.3e-18 Score=109.67 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=66.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.++++|..|++ +||..++|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 38999999999999999999999999999998754 6899999999999999998 9999999999999987
No 246
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.4e-17 Score=111.31 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=70.3
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 6 ~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEE----LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHH----HHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 57999999999999999 77999999999998554 37788999999999999999999 799999999999999
Q ss_pred Ecccc
Q 025982 92 YAKTK 96 (245)
Q Consensus 92 ~~~~~ 96 (245)
++++.
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 98764
No 247
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=111.32 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=73.3
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+. ++||||+|.+.++|.+|+..||+..+.|+.|
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQE----LRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHH----HHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 44567789999999999999999 77999999999999887 4599999999999999999999999999999
Q ss_pred EEEEccccch
Q 025982 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.++..
T Consensus 75 ~V~~a~~~~~ 84 (92)
T 2dgt_A 75 HVQLSTSRLR 84 (92)
T ss_dssp EEEESSCCCS
T ss_pred EEEEccCCCC
Confidence 9999977544
No 248
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=111.52 Aligned_cols=83 Identities=10% Similarity=0.095 Sum_probs=73.1
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.......++|||+|||.++++++ |+++|+.| .|..|.+. .+|.++|||||+|.+.++|.+|+. ||+..+.|+
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~----l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKN----VMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHH----HHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CCCCCCccEEEEECCCCCCCHHH----HHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 34456689999999999999999 77999999 88887544 578899999999999999999999 999999999
Q ss_pred eEEEEEccccc
Q 025982 87 PMRIQYAKTKS 97 (245)
Q Consensus 87 ~i~v~~~~~~~ 97 (245)
.|.|.++.++.
T Consensus 78 ~i~v~~a~~~~ 88 (91)
T 2dgw_A 78 YIEVFREKSGP 88 (91)
T ss_dssp EEEEEEESSCC
T ss_pred EEEEEECCcCC
Confidence 99999987653
No 249
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=2.2e-17 Score=113.47 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+. ++||||+|.+.++|.+|++.||+..+.|+.|+
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEI----LEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHH----HHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 3456689999999999999999 77999999999999876 56999999999999999999999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 77 v~~a~~~~~ 85 (103)
T 2dgu_A 77 IVFAKPPDQ 85 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCcc
Confidence 999977544
No 250
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=116.40 Aligned_cols=77 Identities=25% Similarity=0.453 Sum_probs=69.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCe----eEEEEecCC-CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGF----KEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v----~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.| ..+.+..++ +|||||+|.+.++|..|+..|||..+.|++|+|+||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 467899999999999999999999999998 566666443 699999999999999999999999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 103 ~~ 104 (115)
T 2cpx_A 103 KN 104 (115)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 251
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-17 Score=112.95 Aligned_cols=76 Identities=14% Similarity=0.300 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCee--------CCe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKI--------GQQ 236 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~--------~g~ 236 (245)
.+.++|||+|||..+++++|+.+|+.||.|.++.++.++ +|||||+|.+.++|..|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456789999999999999999999999999999998863 68999999999999999999999999 688
Q ss_pred EeEEEEec
Q 025982 237 QLLITYAK 244 (245)
Q Consensus 237 ~i~v~~ak 244 (245)
+|.|.||+
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 89999986
No 252
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=1.9e-17 Score=116.62 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPG---FKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~---v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
...++|||+|||..+++++|+++|+.||. |..|.++.++ +|||||+|.+.++|..|++ +||..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 35678999999999999999999999999 8899988753 6899999999999999999 99999999999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
+|+
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 985
No 253
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=115.29 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=67.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..+ |..++|++|.|.+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356789999999999999999999999999999998753 689999999999999999976 69999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 102 ~ 102 (109)
T 2rs2_A 102 F 102 (109)
T ss_dssp C
T ss_pred c
Confidence 5
No 254
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=115.46 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=70.0
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
....+.++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..+ +..+.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~----L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEG----LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ------CCEEEESCCTTCCHHH----HHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHH----HHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 3456689999999999999999 779999999999987765 4788999999999999999999965 5899999
Q ss_pred eEEEEEccccc
Q 025982 87 PMRIQYAKTKS 97 (245)
Q Consensus 87 ~i~v~~~~~~~ 97 (245)
.|.|.++.++.
T Consensus 95 ~l~V~~a~~~~ 105 (109)
T 2rs2_A 95 TIDPKVAFPRR 105 (109)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999987654
No 255
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.2e-18 Score=116.66 Aligned_cols=85 Identities=12% Similarity=0.289 Sum_probs=75.4
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.....+.++|||+|||..+++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+.. |+..|.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQET----LRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHH----HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred cCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 34567789999999999999999 77999999999988654 3678999999999999999999997 9999999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|.|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 RNIDPKPCTPRGM 97 (105)
T ss_dssp EEEBCCCSCCSSC
T ss_pred EEEEEEEccCCCC
Confidence 9999999876544
No 256
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=2.4e-17 Score=121.08 Aligned_cols=82 Identities=18% Similarity=0.375 Sum_probs=74.8
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+..+ ++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTE----LERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHH----HHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHH----HHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34456689999999999999999 7799999999999988875 68999999999999999999999999999999
Q ss_pred EEEEcccc
Q 025982 89 RIQYAKTK 96 (245)
Q Consensus 89 ~v~~~~~~ 96 (245)
+|.++.++
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998765
No 257
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=5.7e-18 Score=123.45 Aligned_cols=84 Identities=27% Similarity=0.504 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE--------EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCC
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~ 81 (245)
....++++|||+|||..+++++ |+++|+.||.|.. |....++.++|||||+|.+.++|.+|+..|||.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKD----LKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHH----HHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 4466789999999999999999 7799999998865 556678999999999999999999999999999
Q ss_pred ccCCceEEEEEccccc
Q 025982 82 PFYDKPMRIQYAKTKS 97 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~ 97 (245)
.+.|+.|+|.++.+..
T Consensus 116 ~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 116 VLFGKPMVVQFARSAR 131 (143)
T ss_dssp EETTEECEEEECCCSC
T ss_pred EeCCcEEEEEECCCCC
Confidence 9999999999997643
No 258
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=114.94 Aligned_cols=83 Identities=16% Similarity=0.391 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCC-eEEEEeC-C---CCCceeEEEEEecCHHHHHHHHHHHc--CCccC
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT-ILEILAF-K---TLKHKGQAWLVFKDVASATAAVEKMQ--GFPFY 84 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~-v~~i~~~-~---~~~~kg~afV~F~~~e~A~~a~~~l~--~~~~~ 84 (245)
..++++|||+|||.++++++ |+++|+.||. |..|.+. . ++.++|||||+|.+.++|.+|+..|| +..+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~----l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREE----ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHH----HHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred ccCCCEEEEeCCCCcCCHHH----HHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 45679999999999999999 7799999998 9998765 2 46789999999999999999999996 58999
Q ss_pred CceEEEEEccccch
Q 025982 85 DKPMRIQYAKTKSD 98 (245)
Q Consensus 85 g~~i~v~~~~~~~~ 98 (245)
|+.|+|.++.++..
T Consensus 81 g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 81 GHQIAVDWAEPEID 94 (109)
T ss_dssp TBCCEEEESCSSCS
T ss_pred CCeEEEEEcCCCCC
Confidence 99999999987544
No 259
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=115.44 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCe-eEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGF-KEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v-~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+..+|||+|||..+++++|+++|+.||.| ..|.++.++ +|||||+|.+.++|..|+.. |+..|.|++|.|.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356789999999999999999999999999 889988753 78999999999999999986 999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 6
No 260
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=3.1e-17 Score=121.27 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
..+.++|||+|||..+++++ |.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQ----IYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45689999999999999999 779999999999986643 57799999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025982 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.+...
T Consensus 112 ~V~~a~~~~~ 121 (156)
T 1h2v_Z 112 RTDWDAGFKE 121 (156)
T ss_dssp EEEEESCCCT
T ss_pred EEEECCCCCC
Confidence 9999986543
No 261
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=122.37 Aligned_cols=83 Identities=18% Similarity=0.378 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE--EEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCC----
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--ILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGF---- 81 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~---- 81 (245)
...++++|||+|||.++++++ |+++|+.||.|.. |++. .+|.++|||||+|.+. +|.+|+..||+.
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~----L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDS----ILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHH----HHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 346689999999999999999 7799999999955 5443 3788999999999999 999999999999
Q ss_pred ccCCceEEEEEccccch
Q 025982 82 PFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~~ 98 (245)
.+.|+.|+|.++.+...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999977543
No 262
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=112.54 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=72.7
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE-EEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE-ILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~-i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.++....++|||+|||.++++++ |+++|+.||.|.. |.+. .+|+++|||||+|.+.++|.+|+.. |+..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEE----IVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHH----HHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 34456689999999999999999 7799999999987 6443 4788999999999999999999996 9999999
Q ss_pred ceEEEEEcccc
Q 025982 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
+.|.|.++..+
T Consensus 84 r~i~v~~~~~~ 94 (104)
T 1wg5_A 84 RYIEIFKSSRA 94 (104)
T ss_dssp SCCEEEEECTT
T ss_pred cEEEEEECCHH
Confidence 99999987654
No 263
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=111.94 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeE-EEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE-VRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~-v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
....+|||+|||..+++++|+++|+.||.|.. |.++.+. +|||||+|.++++|..|+.. |+..++|+.|.|.+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35678999999999999999999999999987 8777642 68999999999999999997 999999999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
.+
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 63
No 264
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=7.8e-18 Score=108.84 Aligned_cols=72 Identities=18% Similarity=0.379 Sum_probs=66.0
Q ss_pred eEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
+|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++ +|+..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVED----VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHH----HHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999 779999999999986553 67889999999999999999998 9999999999999875
No 265
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=3.1e-17 Score=121.53 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
....++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~----l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDT----LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHH----HHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45579999999999999999 779999999999987664 68899999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++.+..
T Consensus 143 ~v~~a~~~~ 151 (158)
T 2kn4_A 143 RVQMARYGR 151 (158)
T ss_dssp EEEEECCSS
T ss_pred EEEECCCCC
Confidence 999997654
No 266
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=117.89 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE---EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE---ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~---i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
.....++|||+|||.++++++ |+++|+.||.|.. +....+|.++|||||+|.+.++|.+|+. ||+..|.|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKH----VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHH----HHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSC
T ss_pred CCCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 345578999999999999999 7799999999854 4566789999999999999999999999 9999999999
Q ss_pred EEEEEccccc
Q 025982 88 MRIQYAKTKS 97 (245)
Q Consensus 88 i~v~~~~~~~ 97 (245)
|.|.++..+.
T Consensus 96 i~V~~a~~~~ 105 (124)
T 1wel_A 96 IQVHPITKKG 105 (124)
T ss_dssp BEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999987644
No 267
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=4.8e-17 Score=108.62 Aligned_cols=72 Identities=26% Similarity=0.342 Sum_probs=63.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCee--CCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI--GQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~i~v~~ak 244 (245)
++.++|||+|||..+++++|+++|++||.|.++.++.+.+|||||+|.++++|. .++|..+ .|++|.|.+|+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 466789999999999999999999999999999999888899999999999987 3566554 59999999986
No 268
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-17 Score=111.19 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.....+.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+. ++..+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g 82 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQD----LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 82 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHH----HHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT
T ss_pred CCccCCCCEEEEEcCCCcCCHHH----HHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC
Confidence 34456789999999999999999 77999999999998654 358899999999999999999999 4778999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
+.|.|.++.++..
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 9999999977544
No 269
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=7.1e-18 Score=110.73 Aligned_cols=71 Identities=23% Similarity=0.391 Sum_probs=64.4
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhccCCCeeEEEEecC---CCeEEEEEEcCHHHHHHHHHHhCCCeeCCe-EeEE
Q 025982 171 NNILFVQNVPHDT------TPMALQMFFSQFPGFKEVRMVEA---KPGIAFVEYGDEMQATVAMQSLQSLKIGQQ-QLLI 240 (245)
Q Consensus 171 ~~~l~v~nl~~~~------~~~~L~~~f~~~G~v~~v~~~~~---~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~i~v 240 (245)
+++|||+|||..+ ++++|+.+|++||.|.++.+.+. .+|||||+|.++++|..|+..|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3679999999999 78999999999999999998752 269999999999999999999999999999 8876
Q ss_pred E
Q 025982 241 T 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 270
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=116.13 Aligned_cols=80 Identities=18% Similarity=0.402 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRD----LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHH----HHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 357999999999999999 779999999999987764 4778999999999999999999 79999999999999
Q ss_pred EEccccch
Q 025982 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (114)
T 2cq4_A 99 QASQAEKN 106 (114)
T ss_dssp EEHHHHHH
T ss_pred EecCCCcc
Confidence 99876544
No 271
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=118.62 Aligned_cols=75 Identities=13% Similarity=0.280 Sum_probs=66.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEec-C----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVE-A----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~-~----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
....+|||+|||..+++++|+++|+.||.|..+.++. . .+|||||+|.+.++|..|+. |||..|+|+.|.|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3567899999999999999999999999997633333 2 16999999999999999999 9999999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 6
No 272
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=110.09 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.+.++|||+|||..+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+. ++..+.|++|.|.||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 356779999999999999999999999999999998864 5899999999999999998 578999999999998
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
+
T Consensus 91 ~ 91 (103)
T 2cqg_A 91 N 91 (103)
T ss_dssp C
T ss_pred C
Confidence 6
No 273
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7e-17 Score=110.72 Aligned_cols=74 Identities=27% Similarity=0.479 Sum_probs=65.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.++++|||+|||..+++++|+++|+.|+ .+.++.++ +|||||+|.++++|..|++.|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4667899999999999999999999875 44555442 689999999999999999999999999999999999
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 90 ~~ 91 (102)
T 2fc8_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 274
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=2.4e-17 Score=117.13 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|..|+ .|||..|+|++|+|+||+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35789999999999999999999999999999998753 689999999999999999 799999999999999986
No 275
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.7e-18 Score=108.95 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=66.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
++|||+|||..+++++|+++|++||.|.++.++.++ +|+|||+|.++++|..|++.++ ..++|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 359999999999999999999999999999998764 6899999999999999999998 9999999999997
No 276
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=4.8e-17 Score=121.39 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
..++++|||+|||..+++++ |.++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~----L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDE----IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45578899999999999999 77999999999998655 478899999999999999999999999999999999
Q ss_pred EEEEccccch
Q 025982 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
.|.|+.++..
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999976544
No 277
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.6e-18 Score=113.08 Aligned_cols=80 Identities=26% Similarity=0.381 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCC-eEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC-CccCCceE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT-ILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG-FPFYDKPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~-v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~-~~~~g~~i 88 (245)
...+.++|||+|||.++++++ |+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADD----LRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHH----HHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHH----HHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 345678999999999999999 7799999999 5555542 579999999999999999999999 99999999
Q ss_pred EEEEccccch
Q 025982 89 RIQYAKTKSD 98 (245)
Q Consensus 89 ~v~~~~~~~~ 98 (245)
+|.++.++..
T Consensus 76 ~v~~a~~~~~ 85 (93)
T 2cqh_A 76 EVDYSVSKKL 85 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCccc
Confidence 9999987544
No 278
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=8.6e-18 Score=121.12 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.+..+.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDT----LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHH----HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4455678999999999999999 779999999999987654 678999999999999999999999999999999
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++++...
T Consensus 118 ~l~V~~a~~~~~ 129 (135)
T 2lea_A 118 ELRVQMARYGRP 129 (135)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 279
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.2e-18 Score=114.13 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=68.2
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.+ |.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQ----VKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHH----HTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHH----HHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 5899999999999999 779999999999987664 4788999999999999 9999999999999999999999
Q ss_pred ccccch
Q 025982 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 876544
No 280
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=113.86 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCC-eeEEEEe-cC-----CCeEEEEEEcCHHHHHHHHHHhC--CCeeCCeEeE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPG-FKEVRMV-EA-----KPGIAFVEYGDEMQATVAMQSLQ--SLKIGQQQLL 239 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~-v~~v~~~-~~-----~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~i~ 239 (245)
.++++|||+|||..+++++|+.+|+.||. |.++.++ .+ .+|||||+|.++++|..|++.|| +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35788999999999999999999999998 9999988 32 36999999999999999999996 5899999999
Q ss_pred EEEec
Q 025982 240 ITYAK 244 (245)
Q Consensus 240 v~~ak 244 (245)
|.||+
T Consensus 86 V~~a~ 90 (109)
T 2dis_A 86 VDWAE 90 (109)
T ss_dssp EEESC
T ss_pred EEEcC
Confidence 99997
No 281
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.71 E-value=4.8e-17 Score=114.87 Aligned_cols=74 Identities=30% Similarity=0.382 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
.++++|||+|+ .+++++|+.+|+.||.|.+|.+... +|||||+|.+.++|..|++.|||..+.|++|+|.||+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~-kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT-TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 46788999996 6999999999999999999999755 49999999999999999999999999999999999973
No 282
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=3e-17 Score=116.20 Aligned_cols=77 Identities=34% Similarity=0.527 Sum_probs=68.6
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeE-EEEEecCHHHHHHHHHHHcCCccCC--ceEEEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ-AWLVFKDVASATAAVEKMQGFPFYD--KPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~-afV~F~~~e~A~~a~~~l~~~~~~g--~~i~v~~ 92 (245)
..|||+||++.+|+++ |+++|+.||.|..|++... .+|+ |||+|.+.++|.+|++.|||..|.| ++|+|+|
T Consensus 29 L~I~V~NL~~~vte~~----L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDV----LHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHH----HHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHH----HHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 4566999999999999 7899999999999977643 3577 9999999999999999999999998 8999999
Q ss_pred ccccch
Q 025982 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+++...
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 987654
No 283
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=3.3e-17 Score=113.98 Aligned_cols=77 Identities=27% Similarity=0.420 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCcc-cCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 12 ISPNNTIYINNLNEK-VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~-~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
..++++|||+|||.. +++++ |+++|+.||.|..|.+ ++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~----l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSD----VETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHH----HHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHH----HHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445689999999999 99999 7799999999999987 5799999999999999999999999999999999
Q ss_pred EEccccc
Q 025982 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
.++....
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987543
No 284
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=5.3e-18 Score=113.62 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=67.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
++|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.+.+ |..|+..|||..++|++|+|++|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 469999999999999999999999999999998753 689999999999 999999999999999999999986
No 285
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-17 Score=111.48 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+++++|+++|+.| .|..|.++.++ +|+|||+|.++++|..|+ .+|+..|+||.|.|..|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45689999999999999999999999 89999998753 799999999999999999 699999999999998875
No 286
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=113.19 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCCCCCeEEE--cCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCcc-----
Q 025982 11 EISPNNTIYI--NNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF----- 83 (245)
Q Consensus 11 ~~~~~~~l~V--~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~----- 83 (245)
...++++||| +||+.++++++ |+++|++||.|..|.+.. .||||||+|.+.++|.+|++.|||..+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~----L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQ----LLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHH----HHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHH----HHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 3567899999 77999999999 779999999999998764 379999999999999999999999988
Q ss_pred CCceEEEEEccccch
Q 025982 84 YDKPMRIQYAKTKSD 98 (245)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (245)
.|++|.|.|+...+.
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 588999999875443
No 287
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=4e-17 Score=117.33 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPG---FKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~---v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
...++|||+|||..+|+++|+++|+.||. |.+|.++.++ +|||||+|.+.++|..|++ +||..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 35678999999999999999999999999 8889988764 6899999999999999999 99999999999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
+|+
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 288
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=111.32 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=67.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+.++|||+|||..+++++|+.+|+.||.|..+ ...+ .+|||||+|.+.++|..|+..|||..+.|++|.|.||+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 467889999999999999999999999998777 2222 26999999999999999999999999999999999985
No 289
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=108.44 Aligned_cols=73 Identities=22% Similarity=0.391 Sum_probs=66.5
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.++ ..+.|+.|+|.+
T Consensus 1 ~~l~v~nlp~~~t~~~----l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEG----LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHH----HHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 5799999999999999 779999999998886543 57889999999999999999999888 999999999988
Q ss_pred c
Q 025982 93 A 93 (245)
Q Consensus 93 ~ 93 (245)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 290
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=108.96 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEE-eCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL-AFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~-~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
+.+.....++|||+|||.++++++ |+++|+.||.|..|+ +..+. ..|.|||+|.+.++|.+|+..||+..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~----l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 8 SVPKRQRIRKLQIRNIPPHLQWEV----LDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp CCCCCCSCCCEEEEEECSSSCHHH----HHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCCCCCCEEEEEcCCCCCCHHH----HHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 334455689999999999999999 779999999999994 55543 234599999999999999999999999999
Q ss_pred eEEEEEcccc
Q 025982 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
+|+|.++.++
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 9999999775
No 291
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=4.4e-17 Score=119.63 Aligned_cols=79 Identities=34% Similarity=0.506 Sum_probs=70.1
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCC--ceEEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD--KPMRIQY 92 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g--~~i~v~~ 92 (245)
..+|||+||+..+++++ |+++|+.||.|..|++.. ..++|||||+|.+.++|.+|++.|||..|.| ++|+|+|
T Consensus 46 vl~l~VgNL~~~vted~----L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDV----LHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHH----HHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHH----HHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 45688999999999999 779999999999998753 2357899999999999999999999999976 9999999
Q ss_pred ccccch
Q 025982 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
++++..
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 987654
No 292
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.9e-17 Score=110.10 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=67.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
....+|||+|||..+++++|+++|+.||. ..|.++.++ +|||||+|.++++|.+|++ +|+..|+|+.|.|.+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 35678999999999999999999999995 489888764 6899999999999999995 89999999999999875
No 293
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=110.59 Aligned_cols=83 Identities=11% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEe--CCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 9 GNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILA--FKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~--~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
.......++|||+|||.++++++ |+++|+.||.+ .|.+ .++++++|||||+|.+.++|.+|++ +|+..+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATEND----IYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHH----HHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHH----HHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 34456678999999999999999 77999999965 6533 3588899999999999999999996 799999999
Q ss_pred eEEEEEccccc
Q 025982 87 PMRIQYAKTKS 97 (245)
Q Consensus 87 ~i~v~~~~~~~ 97 (245)
.|.|.++....
T Consensus 83 ~i~V~~~~~~~ 93 (102)
T 1wez_A 83 YVELFLNSTAG 93 (102)
T ss_dssp CCEEEEECCCC
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 294
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=1e-16 Score=124.51 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=70.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
.|.++|||+|||..+++++|+++|++||.|.+|++++++ +|||||+|.+.++|..|++.+|+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 366789999999999999999999999999999999753 689999999999999999999999999999999987
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
.
T Consensus 93 ~ 93 (213)
T 4f02_A 93 Q 93 (213)
T ss_dssp C
T ss_pred c
Confidence 5
No 295
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=118.13 Aligned_cols=76 Identities=20% Similarity=0.449 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEec--CCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--------VRMVE--AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQL 238 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~--------v~~~~--~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 238 (245)
.++++|||+|||..+++++|+.+|+.||.|.. +.+.. ..+|||||+|.+.++|..|+..|||..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 46788999999999999999999999998865 44333 237999999999999999999999999999999
Q ss_pred EEEEec
Q 025982 239 LITYAK 244 (245)
Q Consensus 239 ~v~~ak 244 (245)
+|+||+
T Consensus 123 ~V~~a~ 128 (143)
T 3egn_A 123 VVQFAR 128 (143)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999996
No 296
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=5.4e-17 Score=115.31 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=71.5
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++|||+|||.++++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 36 ~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQD----LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHH----HHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 68999999999999999 77999999999988654 47889999999999999999999 699999999999999
Q ss_pred Eccccch
Q 025982 92 YAKTKSD 98 (245)
Q Consensus 92 ~~~~~~~ 98 (245)
++.....
T Consensus 111 ~a~~~~~ 117 (124)
T 2jwn_A 111 PKRTNMP 117 (124)
T ss_dssp ESSCCCS
T ss_pred ECCCCCC
Confidence 9876433
No 297
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-18 Score=115.73 Aligned_cols=82 Identities=13% Similarity=0.328 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE--EEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--ILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
..+.++|||+|||.++++++ |+++|+.||.|.. +....++.++|||||+|.+.++|.+|++ ||+..+.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAE----LKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHH----HHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 44678999999999999999 7799999998866 2333467889999999999999999999 999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.++..
T Consensus 89 V~~a~~~~~ 97 (101)
T 1fj7_A 89 LEKPKGRDG 97 (101)
T ss_dssp EECCSCCCC
T ss_pred EEEcCCCCC
Confidence 999976543
No 298
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=4.9e-17 Score=108.43 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
..+++|||+|||.++++++ |+++|+.| .|..|.+. +++|||||+|.+.++|.+|++.||+..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~----l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQE----VHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCEEEESCCSSCCHHH----HHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3568999999999999999 77999999 89888774 6789999999999999999999999999999999999
Q ss_pred ccccc
Q 025982 93 AKTKS 97 (245)
Q Consensus 93 ~~~~~ 97 (245)
+....
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 86644
No 299
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3.3e-17 Score=117.77 Aligned_cols=83 Identities=6% Similarity=0.081 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCC---eEEEEe--CCCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT---ILEILA--FKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~---v~~i~~--~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
++....++|||+|||.++|+++ |+++|+.||. |..|.+ .+.|+++|||||+|.+.++|.+|++ +|+..+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~d----L~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVED----VQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHH----HHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 4456688999999999999999 7799999998 555533 3458899999999999999999999 9999999
Q ss_pred CceEEEEEccccc
Q 025982 85 DKPMRIQYAKTKS 97 (245)
Q Consensus 85 g~~i~v~~~~~~~ 97 (245)
|+.|.|.++....
T Consensus 114 gr~i~V~~a~~~e 126 (136)
T 2hgl_A 114 HRYIEVFKSHRTE 126 (136)
T ss_dssp SSEEEEEECCHHH
T ss_pred CEEEEEEECChHH
Confidence 9999999986543
No 300
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.9e-17 Score=114.44 Aligned_cols=83 Identities=7% Similarity=0.114 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCC---eEEEEe--CCCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT---ILEILA--FKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~---v~~i~~--~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
......++|||+|||.++++++ |+++|+.||. |..|++ .++|+++|||||+|.+.++|.+|++ +|+..+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIED----VQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHH----HHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCCCCcEEEEeCCCCCCCHHH----HHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 3345678999999999999999 7799999998 666543 3468899999999999999999999 9999999
Q ss_pred CceEEEEEccccc
Q 025982 85 DKPMRIQYAKTKS 97 (245)
Q Consensus 85 g~~i~v~~~~~~~ 97 (245)
|+.|.|.++..+.
T Consensus 87 gr~i~V~~a~~~~ 99 (118)
T 2db1_A 87 HRYIEVFKSHRTE 99 (118)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999986543
No 301
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=107.94 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
....++++|||+|| ++++++ |+++|+.||.|..|.+. .++|||||+|.+.++|.+|+..||+..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~----l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTL----LRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHH----HHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHH----HHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 33556899999996 899999 77999999999999874 5689999999999999999999999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.++..
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999977543
No 302
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=5.1e-17 Score=127.37 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=69.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC--CeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFP--GFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITY 242 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G--~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 242 (245)
..++|||+||+..+++++|+++|+.|| .|.+|+|+.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 99999999864 68999999999999999999999999999999999
Q ss_pred ec
Q 025982 243 AK 244 (245)
Q Consensus 243 ak 244 (245)
|+
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 303
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-17 Score=114.24 Aligned_cols=79 Identities=14% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
.++|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. |+..|.|+.|+|.
T Consensus 27 ~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEES----LRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HTEEEEECCTTCCCHHH----HHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 58999999999999999 779999999999886654 578899999999999999999996 9999999999999
Q ss_pred Eccccch
Q 025982 92 YAKTKSD 98 (245)
Q Consensus 92 ~~~~~~~ 98 (245)
++.++..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9987654
No 304
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=3.1e-16 Score=107.71 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=67.7
Q ss_pred CCCcEEEEeCCCC-----CCCHHHHHHHhccCCCeeEEEEecC------CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 169 PPNNILFVQNVPH-----DTTPMALQMFFSQFPGFKEVRMVEA------KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~-----~~~~~~L~~~f~~~G~v~~v~~~~~------~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
.++++|+|+||.. ..++++|+++|++||.|.+|.++.+ .+|+|||+|.++++|.+|++.|||+.|.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999962 2378999999999999999999864 2699999999999999999999999999999
Q ss_pred eEEEEec
Q 025982 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|.||.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999985
No 305
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=6.5e-17 Score=113.31 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeE-----eEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ-----LLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~-----i~v~~ak 244 (245)
..++|||+|||..+++++|+++|+.||.|.+|.++.+ |||||+|.+.++|..|++.|||..|.|++ |+|..++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 4577999999999999999999999999999999877 89999999999999999999999999999 6666543
No 306
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2e-16 Score=111.44 Aligned_cols=80 Identities=26% Similarity=0.394 Sum_probs=69.2
Q ss_pred CCCCCe--EEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeE-EEEEecCHHHHHHHHHHHcCCccCC--c
Q 025982 12 ISPNNT--IYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQ-AWLVFKDVASATAAVEKMQGFPFYD--K 86 (245)
Q Consensus 12 ~~~~~~--l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~-afV~F~~~e~A~~a~~~l~~~~~~g--~ 86 (245)
.+++++ |||+||+..+++++ |+++|++||.|..|++... .|| |||+|.+.++|..|++.|||..|.| +
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~----L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDV----LYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHH----HHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred CCCCcEEEEEEcCcCCCCCHHH----HHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 345555 57999999999999 7799999999999877542 386 9999999999999999999999987 6
Q ss_pred eEEEEEccccch
Q 025982 87 PMRIQYAKTKSD 98 (245)
Q Consensus 87 ~i~v~~~~~~~~ 98 (245)
.|+|.++++...
T Consensus 93 ~l~V~~Ak~~~l 104 (124)
T 2e5i_A 93 TLKIEYARPTRL 104 (124)
T ss_dssp EEEEECCSCSCC
T ss_pred EEEEEEecCCcc
Confidence 999999987754
No 307
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=107.25 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=64.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+++++|+.+|+.||.|.+|.+.+....||||+|.+.++|..|+. |||..|+|++|.|.+|+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 456899999999999999999999999999883222221199999999999999999 99999999999999875
No 308
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=1.2e-16 Score=106.22 Aligned_cols=72 Identities=26% Similarity=0.355 Sum_probs=67.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC----C-------CeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQF----P-------GFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~----G-------~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
.+.++|||+|||..+++++|+++|+.| | .|.++.+..++ |||||+|.++++|..|+ .|||..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-SEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-cEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 356789999999999999999999999 8 89999998775 99999999999999999 99999999999
Q ss_pred eEEEE
Q 025982 238 LLITY 242 (245)
Q Consensus 238 i~v~~ 242 (245)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 309
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-17 Score=112.62 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=65.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC-----CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA-----KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~-----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+..+|||+|||..+++++|+.+|+.||.|.. .++.+ .+|||||+|.+.++|..|++ |||..+.|++|+|.+|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5678999999999999999999999998866 33332 26899999999999999998 99999999999999986
Q ss_pred C
Q 025982 245 K 245 (245)
Q Consensus 245 ~ 245 (245)
.
T Consensus 94 ~ 94 (101)
T 1fj7_A 94 G 94 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 310
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.6e-16 Score=119.66 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.++++|||+|||..+++++|+++|+.||.|..|.++.++ +|+|||+|.+.++|..|++.|||..|.|++|+|+||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 467899999999999999999999999999999998753 6899999999999999999999999999999999985
No 311
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=112.50 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCC---eeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPG---FKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~---v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
....+|||+|||..+++++|+++|+.||. |..|.++.++ +|+|||+|.+.++|..|+. +||..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999988 8999998753 6899999999999999999 99999999999999
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
+|+
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 985
No 312
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=112.52 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCC---eEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGT---ILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~---v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
.+....++|||+|||.++++++ |+++|+.||. |..|.+. +.|+++|||||+|.+.++|.+|+. +|+..+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~----l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMED----VLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHH----HHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCCCCccEEEEeCCCCCCCHHH----HHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 3455678999999999999999 7799999888 7777554 357899999999999999999999 9999999
Q ss_pred CceEEEEEccccc
Q 025982 85 DKPMRIQYAKTKS 97 (245)
Q Consensus 85 g~~i~v~~~~~~~ 97 (245)
|+.|.|.++.+..
T Consensus 81 gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 81 QRYVEVYEINNED 93 (107)
T ss_dssp SSCCCCEECCHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999987644
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3e-18 Score=120.39 Aligned_cols=84 Identities=37% Similarity=0.587 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEE--------EEeC---CCCCceeEEEEEecCHHHHHHHHHHHc
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILE--------ILAF---KTLKHKGQAWLVFKDVASATAAVEKMQ 79 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~--------i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~ 79 (245)
+..++++|||+|||.++++++ |+++|+.||.|.. |.+. .++.++|||||+|.+.++|.+|+..||
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIES----VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 456789999999999999999 7799999999987 6444 357889999999999999999999999
Q ss_pred CCccCCceEEEEEccccch
Q 025982 80 GFPFYDKPMRIQYAKTKSD 98 (245)
Q Consensus 80 ~~~~~g~~i~v~~~~~~~~ 98 (245)
+..+.|+.|+|.++.++..
T Consensus 79 g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 79 GKEFSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999999977654
No 314
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=3e-17 Score=106.05 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=65.3
Q ss_pred eEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEc
Q 025982 17 TIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYA 93 (245)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~ 93 (245)
+|||+|||.++++++ |+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEK----IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHH----HHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 599999999999999 779999999999986653 57889999999999999999999 5999999999999875
No 315
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=1.5e-16 Score=125.07 Aligned_cols=77 Identities=29% Similarity=0.422 Sum_probs=73.5
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 168 APPNNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 168 ~~~~~~l~v~nl~~-~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+++++|||+|||. .+++++|+++|+.||.|.+|.++.+++|||||+|.+.++|..|++.|||..+.|++|.|.||+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 35778999999999 999999999999999999999999988999999999999999999999999999999999986
No 316
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=2.9e-16 Score=104.81 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=62.3
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCcc--CCce
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF--YDKP 87 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~--~g~~ 87 (245)
....+..+|||+|||.++++++ |+++|+.||.|.+|.+..+ ++|||||+|.+.++|.+ +++..+ .|+.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~----L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEE----LQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp -----CCEEEEESCCTTCCHHH----HHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 3456778999999999999999 7799999999999988764 78999999999999983 566554 5899
Q ss_pred EEEEEccccch
Q 025982 88 MRIQYAKTKSD 98 (245)
Q Consensus 88 i~v~~~~~~~~ 98 (245)
|.|.++.++..
T Consensus 76 v~v~~a~~k~~ 86 (89)
T 3d2w_A 76 VHISNAEPKHN 86 (89)
T ss_dssp EEEEECC----
T ss_pred EEEEEcCCCCc
Confidence 99999876543
No 317
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=2.8e-17 Score=106.19 Aligned_cols=70 Identities=19% Similarity=0.359 Sum_probs=65.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 173 ILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 173 ~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
+|||+|||..+++++|+++|+.||.|.++.++.++ +|||||+|.++++|..|++ +++..+.|++|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 48999999999999999999999999999998753 6899999999999999998 5899999999999987
No 318
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=110.75 Aligned_cols=77 Identities=6% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
..+|||+|||.++++++ |+++|+.| .|..|.+. ++|+++|||||+|.+.++|.+|+. +|+..+.|+.|.|..
T Consensus 16 ~~~v~V~nLp~~~te~d----l~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMEND----VRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHH----HHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHH----HHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 57999999999999999 77999999 78787654 467899999999999999999995 999999999999988
Q ss_pred ccccc
Q 025982 93 AKTKS 97 (245)
Q Consensus 93 ~~~~~ 97 (245)
+....
T Consensus 90 a~~~~ 94 (109)
T 2dnn_A 90 ATERQ 94 (109)
T ss_dssp CCHHH
T ss_pred CCccc
Confidence 86543
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=2.2e-16 Score=118.94 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
...++++|||+|||..+++++ |.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~----L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDAD----IQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHH----HHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 345678999999999999999 779999999999987654 57889999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++....
T Consensus 160 ~V~~a~~~~ 168 (177)
T 2f3j_A 160 DIQLVASQI 168 (177)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCC
Confidence 999987643
No 320
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=5.4e-16 Score=115.43 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=70.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+++|||+|||..+++++|+++|+.||.|.++.+++++ +|+|||+|.++++|..|++.|||..+.|++|.|.|++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 5789999999999999999999999999999998864 4899999999999999999999999999999999985
No 321
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=112.96 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCe----EEE--EeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTI----LEI--LAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v----~~i--~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
....+|||+|||.++++++ |+++|+.||.| ..| ....+|+++|||||+|.+.++|.+|++. |+..+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~d----l~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEE----VVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHH----HHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 4568999999999999999 77999999975 233 3346899999999999999999999995 99999999
Q ss_pred eEEEEEcccc
Q 025982 87 PMRIQYAKTK 96 (245)
Q Consensus 87 ~i~v~~~~~~ 96 (245)
.|.|..+..+
T Consensus 96 ~i~V~~a~~~ 105 (123)
T 2dha_A 96 YIELFRSTAA 105 (123)
T ss_dssp EECCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999887654
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.6e-18 Score=119.02 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeE--------EEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKE--------VRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~--------v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g 235 (245)
.++++|||+|||..+++++|+.+|+.||.|.. |.++.++ +|||||+|.+.++|..|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45678999999999999999999999999988 8887653 6899999999999999999999999999
Q ss_pred eEeEEEEec
Q 025982 236 QQLLITYAK 244 (245)
Q Consensus 236 ~~i~v~~ak 244 (245)
++|+|+||+
T Consensus 85 ~~l~V~~a~ 93 (116)
T 2lcw_A 85 NPIKVSFAT 93 (116)
Confidence 999999986
No 323
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=4.7e-16 Score=116.00 Aligned_cols=75 Identities=27% Similarity=0.491 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
++++|||+|||..+++++|+++|+.||.|.++.+++++ +|+|||+|.++++|..|++.|||..+.|++|.|.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46789999999999999999999999999999998753 5899999999999999999999999999999999986
No 324
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=105.82 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
....++|||+|||.++++++ |+++|+.||.|..|...+ ++. ||||+|.+.++|.+|+. ||+..+.|+.|.|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~----l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V 76 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQ----LSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRV 76 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHH----HHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCC
T ss_pred cCCCCEEEEECCCCCCCHHH----HHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEE
Confidence 45678999999999999999 779999999999984443 332 99999999999999999 9999999999999
Q ss_pred EEccccc
Q 025982 91 QYAKTKS 97 (245)
Q Consensus 91 ~~~~~~~ 97 (245)
.++..+.
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 9876543
No 325
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=1.2e-16 Score=125.27 Aligned_cols=80 Identities=20% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccC--CeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFG--TILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G--~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
..++|||+|||.++++++ |+++|+.|| .|..|.+. .+++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~----L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDED----LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHH----HHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHH----HHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 567899999999999999 779999999 89887543 478899999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
+|.++.+..
T Consensus 143 ~V~~a~~~~ 151 (229)
T 3q2s_C 143 VVTPVNKQF 151 (229)
T ss_dssp EEEECCHHH
T ss_pred EEEECCCCc
Confidence 999997654
No 326
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=3.2e-16 Score=109.73 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce----
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP---- 87 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~---- 87 (245)
....++|||+|||.++++++ |.++|+.||.|..|.+..+ |||||+|.+.++|.+|++.||+..|.|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~----l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQD----LKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ----CCEEEEECCSSCCTTH----HHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHH----HHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 34578999999999999999 6799999999999988765 89999999999999999999999999998
Q ss_pred -EEEEEccc
Q 025982 88 -MRIQYAKT 95 (245)
Q Consensus 88 -i~v~~~~~ 95 (245)
|+|..+.+
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 66666554
No 327
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8e-16 Score=114.35 Aligned_cols=81 Identities=25% Similarity=0.446 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
....+.++|||+|||..+++++ |+++|+.||.|..+.+. .+|.++|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~----l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDET----LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHH----HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCceEEECCCCCCCCHHH----HHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 3455688999999999999999 77999999999998654 5688999999999999999999999999999999
Q ss_pred eEEEEEcc
Q 025982 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
.|+|.|++
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 99999985
No 328
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=2.6e-16 Score=104.57 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=66.1
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhccc----C-------CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF----G-------TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~----G-------~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~ 80 (245)
..+.++|||+|||.++++++ |+++|+.| | .|..+.+.++ +|||||+|.+.++|.+|+ .||+
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~----l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEA----MMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHH----HHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCC
Confidence 45678999999999999999 66899998 8 8999988754 799999999999999999 8999
Q ss_pred CccCCceEEEEE
Q 025982 81 FPFYDKPMRIQY 92 (245)
Q Consensus 81 ~~~~g~~i~v~~ 92 (245)
..+.|+.|+|+.
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999974
No 329
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=106.50 Aligned_cols=73 Identities=26% Similarity=0.317 Sum_probs=63.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
++++|||+|||..+++++|+.+|+.||.|.++.++.+.+|||||+|.+.++|..|.. .+..+.|++|.|.+|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 567899999999999999999999999999999998878999999999999975422 1244589999999986
No 330
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=2.3e-16 Score=123.30 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=70.7
Q ss_pred CCCcEEEEeCCCCCC---------CHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCee------
Q 025982 169 PPNNILFVQNVPHDT---------TPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKI------ 233 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~---------~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~------ 233 (245)
..+++|||+||+..+ ++++|+.+|++||.|.+|.++.++ |||||+|.+.++|..|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-NCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-TEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-CEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 467899999999888 799999999999999999999875 9999999999999999999999999
Q ss_pred ------CCeEeEEEEec
Q 025982 234 ------GQQQLLITYAK 244 (245)
Q Consensus 234 ------~g~~i~v~~ak 244 (245)
.|++|.|.||+
T Consensus 211 e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWAN 227 (240)
T ss_dssp TGGGGGGSCCCEEEECC
T ss_pred cccccCCCCEEEEEEcc
Confidence 89999999997
No 331
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2.3e-16 Score=111.66 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=69.3
Q ss_pred CCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeE--EEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 10 NEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTIL--EILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~--~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
.+....++|||+|||+++++++ |+++|+.| .|. .|.+. ++|+++|||||+|.+.++|.+|++ +++..+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~d----L~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g 110 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEE----IVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH 110 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHH----HHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHH----HHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC
Confidence 3445678999999999999999 77999999 566 67654 358899999999999999999999 58899999
Q ss_pred ceEEEEEcccc
Q 025982 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
+.|.|..+..+
T Consensus 111 R~I~V~~a~~~ 121 (126)
T 2hgm_A 111 RYIEVFKSSQE 121 (126)
T ss_dssp BCCCCEEECHH
T ss_pred EEEEEEECCHH
Confidence 99999887543
No 332
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=2e-16 Score=108.42 Aligned_cols=73 Identities=18% Similarity=0.396 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
.+++|||+|||..+++++|+.+|+.||.|.++.++.++ +|||||+|.+.++|..|+. +|..++|++|.|.+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56789999999999999999999999999999999863 6899999999999999998 9999999999999985
No 333
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=7.9e-17 Score=110.44 Aligned_cols=81 Identities=19% Similarity=0.357 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
..+.++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|+. ++..+.|+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~----l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETE----IRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 34568999999999999999 779999999999875543 78899999999999999999999 99999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++..+..
T Consensus 80 v~~a~~~~~ 88 (102)
T 2xs2_A 80 LGPAIRKQN 88 (102)
T ss_dssp EEEEEECC-
T ss_pred EEECCcCcc
Confidence 999876543
No 334
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-15 Score=105.09 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=66.2
Q ss_pred CCCcEEEEeCCCCCCC-----------HHHHHHHhccCCCeeEEEEec-CCCeEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 025982 169 PPNNILFVQNVPHDTT-----------PMALQMFFSQFPGFKEVRMVE-AKPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~-----------~~~L~~~f~~~G~v~~v~~~~-~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 236 (245)
.++.+|+|+||..... +++|+.+|++||.|..|.+.. ..+|+|||+|.+.++|..|+..|||..|.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4678999999954332 689999999999999996642 2379999999999999999999999999999
Q ss_pred EeEEEEec
Q 025982 237 QLLITYAK 244 (245)
Q Consensus 237 ~i~v~~ak 244 (245)
+|.|.||+
T Consensus 93 ~l~v~~a~ 100 (112)
T 2dit_A 93 QITAQAWD 100 (112)
T ss_dssp ECEEEECC
T ss_pred EEEEEEeC
Confidence 99999985
No 335
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=5.2e-16 Score=116.67 Aligned_cols=79 Identities=27% Similarity=0.361 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~ 91 (245)
..+.++|||+|||.++++++ |+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~----l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDE----LKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHH----HHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHH----HHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44678999999999999999 77999999999887 7788999999999999999999999999999999999999
Q ss_pred Ecccc
Q 025982 92 YAKTK 96 (245)
Q Consensus 92 ~~~~~ 96 (245)
|+.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99765
No 336
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=119.88 Aligned_cols=74 Identities=30% Similarity=0.443 Sum_probs=71.5
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 171 NNILFVQNVPH-DTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 171 ~~~l~v~nl~~-~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
+++|||+|||. .+++++|+++|+.||.|.+|+++.+++|||||+|.++++|..|+..|||..+.|++|.|.||+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 999999999999999999999999888999999999999999999999999999999999986
No 337
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.3e-15 Score=104.58 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCc-----ccCHHHHHHHHHHhhcccCCeEEEEeCCC----CCceeEEEEEecCHHHHHHHHHHHcCCc
Q 025982 12 ISPNNTIYINNLNE-----KVKIDQLKQSLHAVFKQFGTILEILAFKT----LKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~-----~~~~~~l~~~l~~~F~~~G~v~~i~~~~~----~~~kg~afV~F~~~e~A~~a~~~l~~~~ 82 (245)
..++++|+|+||.. +.++++ |++.|++||.|.+|.+.++ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~d----l~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVE----TKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHH----HHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHH----HHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 35789999999973 235566 7799999999999876542 5789999999999999999999999999
Q ss_pred cCCceEEEEEccc
Q 025982 83 FYDKPMRIQYAKT 95 (245)
Q Consensus 83 ~~g~~i~v~~~~~ 95 (245)
|.||.|+|.++..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999865
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=6.5e-16 Score=109.04 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 11 EISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
...++++|||+|| ++++++ |+++|+.||.|..|.+. .++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~----L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTL----LRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHH----HHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEcCC--CCCHHH----HHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456899999996 699999 77999999999998775 56899999999999999999999999999999999
Q ss_pred EEccccch
Q 025982 91 QYAKTKSD 98 (245)
Q Consensus 91 ~~~~~~~~ 98 (245)
.++.++..
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987543
No 339
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=5e-16 Score=109.89 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=66.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCee--EEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFK--EVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~--~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
...+|||+|||..+++++|+++|+.| .|. .|.++.++ +|||||+|.++++|.+|++ +++..|+||.|.|.+|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 56789999999999999999999999 566 89988753 7999999999999999998 5789999999999987
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
.
T Consensus 119 ~ 119 (126)
T 2hgm_A 119 S 119 (126)
T ss_dssp C
T ss_pred C
Confidence 5
No 340
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=110.17 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=66.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCe----eEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGF----KEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v----~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
...+|||+|||..+++++|+++|+.||.| ..|.|+.++ +|||||+|.+.++|..|++. |+..|+||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45789999999999999999999999975 688887653 69999999999999999985 9999999999998
Q ss_pred Eec
Q 025982 242 YAK 244 (245)
Q Consensus 242 ~ak 244 (245)
.|.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 875
No 341
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.4e-16 Score=114.89 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
...+|||+|||..+++++|+++|+.|| |..|.++.++ +|||||+|.++++|..|+ .+|+..|+|+.|.|.+|.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 456799999999999999999999999 7799998753 789999999999999999 799999999999999875
No 342
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.6e-16 Score=114.56 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
....++|||+|||.++++++ |+++|+.|| |..|.+. ++++++|||||+|.+.++|.+|+ .+|+..+.|+.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~d----L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATEND----IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHH----HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 44578999999999999999 779999999 5577654 35789999999999999999999 5899999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|..+.....
T Consensus 117 V~~a~~~~~ 125 (139)
T 2hgn_A 117 LFLNSTTGA 125 (139)
T ss_dssp CEECCCSCC
T ss_pred EEECCCCCC
Confidence 999876543
No 343
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=2.6e-15 Score=121.46 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=71.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeeEEEEecCC--CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 168 APPNNILFVQNVPHDTTPMALQ----MFFSQFPGFKEVRMVEAK--PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 168 ~~~~~~l~v~nl~~~~~~~~L~----~~f~~~G~v~~v~~~~~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
..++++|||+|||..+++++|+ ++|+.||.|.+|++.++. +|||||+|.+.++|..|++.|||..+.|++|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3568899999999999999976 999999999999988743 6999999999999999999999999999999999
Q ss_pred EecC
Q 025982 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
||+.
T Consensus 86 ~a~~ 89 (282)
T 3pgw_A 86 YAKT 89 (282)
T ss_pred Eecc
Confidence 9863
No 344
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=2.2e-15 Score=103.49 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=66.6
Q ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHhccCCCeeEEEEecCC-------CeEEEEEEcCHHHHHHHHHHhCCC
Q 025982 169 PPNNILFVQNV--PHDTT--------PMALQMFFSQFPGFKEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSL 231 (245)
Q Consensus 169 ~~~~~l~v~nl--~~~~~--------~~~L~~~f~~~G~v~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~ 231 (245)
.|+++|.|.|+ |..+. +++|+..|++||.|.+|.++.++ +|+|||+|.++++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47889999999 33332 37899999999999999998642 699999999999999999999999
Q ss_pred eeCCeEeEEEEec
Q 025982 232 KIGQQQLLITYAK 244 (245)
Q Consensus 232 ~~~g~~i~v~~ak 244 (245)
.|+||+|+|+|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999973
No 345
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=2.6e-15 Score=116.58 Aligned_cols=82 Identities=27% Similarity=0.401 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
...++|||+|||.++++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDD----IKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHH----HHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHH----HHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 4568999999999999999 77999999999998654 3678899999999999999999999999999999999
Q ss_pred EEEccccch
Q 025982 90 IQYAKTKSD 98 (245)
Q Consensus 90 v~~~~~~~~ 98 (245)
|.++.+...
T Consensus 199 V~~a~~~~~ 207 (216)
T 2qfj_A 199 VGKAVTPPM 207 (216)
T ss_dssp EEECSSCSS
T ss_pred EEEecCCCC
Confidence 999877543
No 346
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.6e-16 Score=104.19 Aligned_cols=78 Identities=18% Similarity=0.361 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.++++|||+|||.++++++ |+++|+.||.|..|.+..+ ++|||||+|.+.++|.+|... ...+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~----l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDE----LREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHH----HHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHH----HHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEe
Confidence 4579999999999999999 7799999999999988754 789999999999999764331 3445799999999
Q ss_pred ccccch
Q 025982 93 AKTKSD 98 (245)
Q Consensus 93 ~~~~~~ 98 (245)
+.++..
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 877544
No 347
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.8e-15 Score=112.22 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
....++|||+|||..+++++ |+++|+.||.|..|.+. .+|.++|+|||+|.+.++|.+|++.|||..+.|+.|
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~----l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQ----VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHH----HHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEEcCCCcCCHHH----HHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence 34578999999999999999 77999999999987543 377889999999999999999999999999999999
Q ss_pred EEEEcc
Q 025982 89 RIQYAK 94 (245)
Q Consensus 89 ~v~~~~ 94 (245)
.|.+|.
T Consensus 167 ~V~~As 172 (172)
T 2g4b_A 167 LVQRAS 172 (172)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999873
No 348
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=2.2e-15 Score=128.69 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceE
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPM 88 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i 88 (245)
..+.++|||+|||..+++++ |.++|+.||.|..|.+. .++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~----L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESK----LRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHH----HHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 34568999999999999999 77999999999998665 368899999999999999999999999999999999
Q ss_pred EEEEccccc
Q 025982 89 RIQYAKTKS 97 (245)
Q Consensus 89 ~v~~~~~~~ 97 (245)
.|.++.+..
T Consensus 175 ~V~~a~~~~ 183 (437)
T 3pgw_S 175 LVDVERGRT 183 (437)
T ss_pred EEEEeCCCC
Confidence 999997643
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=105.47 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---C---CCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---T---LKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~---~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
....++|||+|||.++++++ |+++|+.||.|. +.+.. + |+++|||||+|.+.++|.+|++.|++ +.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~----L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G 77 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDE----ITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDG 77 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHH----HHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETT
T ss_pred CCCCCEEEEcCCCCCCCHHH----HHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCC
Confidence 45679999999999999999 779999999998 55443 2 68899999999999999999998853 667
Q ss_pred ceEEEEEcc
Q 025982 86 KPMRIQYAK 94 (245)
Q Consensus 86 ~~i~v~~~~ 94 (245)
+.+.+..+.
T Consensus 78 ~~~~~~~~~ 86 (114)
T 2dnl_A 78 KLYLCVSSP 86 (114)
T ss_dssp EEEEEECCS
T ss_pred cEEEeccCC
Confidence 777666543
No 350
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=5.9e-15 Score=118.10 Aligned_cols=75 Identities=24% Similarity=0.382 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
..+++|||+|||..+|+++|+++|+.||.|..|.+.+++ |||||+|.+.++|..|+..+||..+.|++|.|.||+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 456789999999999999999999999999999998775 999999999999999999999999999999999985
No 351
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=2e-15 Score=118.00 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCccc---------CHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCc
Q 025982 12 ISPNNTIYINNLNEKV---------KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFP 82 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~---------~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~ 82 (245)
...+++|||+||+..+ ++++ |+.+|++||.|.+|.+.. ++|||||.|.+.++|..|++.|++..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~----L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESR----IRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHH----HHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHH----HHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 5568999999999998 6888 779999999999998764 58999999999999999999999999
Q ss_pred c------------CCceEEEEEccccch
Q 025982 83 F------------YDKPMRIQYAKTKSD 98 (245)
Q Consensus 83 ~------------~g~~i~v~~~~~~~~ 98 (245)
+ .|+.|.|.||...+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987654
No 352
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=4.2e-15 Score=113.83 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC---CCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF---KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~---~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
.+.++|||+|||..+++++ |+++|+.||.|..|.+. .++.++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~----l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQ----VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp CCCCEEEEECCCTTCCHHH----HHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHH----HHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 5679999999999999999 77999999999988554 3778899999999999999999999999999999999
Q ss_pred EEEccccc
Q 025982 90 IQYAKTKS 97 (245)
Q Consensus 90 v~~~~~~~ 97 (245)
|.++.+..
T Consensus 188 v~~a~~~~ 195 (198)
T 2yh0_A 188 VQRASVGA 195 (198)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99997653
No 353
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=4.7e-15 Score=111.17 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeC--CCCCceeEEEEEecCHHHHHHHHHHHcCCccC---Cc
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAF--KTLKHKGQAWLVFKDVASATAAVEKMQGFPFY---DK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~--~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~---g~ 86 (245)
..+.++|||+|||.++++++ |+++|+.||.|..|.+. .+|.++|||||+|.+.++|.+|++.|||..+. ++
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~----l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 167 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTEND----IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS 167 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHH----HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSS
T ss_pred cCCCCeEEEcCCCCcCCHHH----HHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCC
Confidence 34678999999999999999 77999999999987554 46788999999999999999999999998776 48
Q ss_pred eEEEEEcc
Q 025982 87 PMRIQYAK 94 (245)
Q Consensus 87 ~i~v~~~~ 94 (245)
+|+|.||.
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 99999973
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.4e-15 Score=103.42 Aligned_cols=88 Identities=17% Similarity=0.279 Sum_probs=71.5
Q ss_pred CCCCCCCCeEEEcCCCcccC--H-----HHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCC
Q 025982 9 GNEISPNNTIYINNLNEKVK--I-----DQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~~--~-----~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~ 81 (245)
.....++++|+|+||..... + +++.+.|+++|++||.|..|.+ .+..++|||||+|.+.++|.+|+..|||.
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34567799999999944332 1 2234448899999999999866 34458999999999999999999999999
Q ss_pred ccCCceEEEEEccccc
Q 025982 82 PFYDKPMRIQYAKTKS 97 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~~ 97 (245)
.|.|++|+|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999987654
No 355
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.6e-15 Score=113.05 Aligned_cols=78 Identities=17% Similarity=0.395 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC---CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK---TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~---~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
+.++|||+|||.++++++ |+++|+.||.|..|.+.. +|.++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~----l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V 160 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKE----FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEI 160 (167)
T ss_dssp HCEEEEEEEECTTCCHHH----HHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEE
T ss_pred CCCeEEECCCCCCCCHHH----HHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEE
Confidence 467999999999999999 779999999999987654 57899999999999999999999 8999999999999
Q ss_pred EEcccc
Q 025982 91 QYAKTK 96 (245)
Q Consensus 91 ~~~~~~ 96 (245)
.++.++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999764
No 356
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.1e-15 Score=104.13 Aligned_cols=73 Identities=10% Similarity=0.154 Sum_probs=64.3
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcC----HHH----HHHHHH--HhCCCe
Q 025982 172 NILFVQNV----PHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGD----EMQ----ATVAMQ--SLQSLK 232 (245)
Q Consensus 172 ~~l~v~nl----~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~----~~~----A~~Al~--~l~g~~ 232 (245)
+.|||+|| |..+++++|+++|+.||.|.++.++.++ +|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 45999999 9999999999999999999999999876 7999999996 433 788888 789999
Q ss_pred eCCeEeEEEEec
Q 025982 233 IGQQQLLITYAK 244 (245)
Q Consensus 233 ~~g~~i~v~~ak 244 (245)
|+|++|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998743
No 357
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=8.4e-15 Score=111.94 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 169 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
...++|||+|||..+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|..|+.. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 356789999999999999999999999999999999753 68999999999999999985 899999999999997
Q ss_pred c
Q 025982 244 K 244 (245)
Q Consensus 244 k 244 (245)
.
T Consensus 90 ~ 90 (196)
T 1l3k_A 90 V 90 (196)
T ss_dssp C
T ss_pred c
Confidence 5
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=1.1e-14 Score=100.04 Aligned_cols=84 Identities=14% Similarity=0.330 Sum_probs=70.6
Q ss_pred CCCCeEEEcCC--CcccCH----HHHHHHHHHhhcccCCeEEEEeCCC-----CCceeEEEEEecCHHHHHHHHHHHcCC
Q 025982 13 SPNNTIYINNL--NEKVKI----DQLKQSLHAVFKQFGTILEILAFKT-----LKHKGQAWLVFKDVASATAAVEKMQGF 81 (245)
Q Consensus 13 ~~~~~l~V~nL--p~~~~~----~~l~~~l~~~F~~~G~v~~i~~~~~-----~~~kg~afV~F~~~e~A~~a~~~l~~~ 81 (245)
.|+++|.+.|+ |.+..+ ++|.+-|++.|++||.|.+|.+.++ +.++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999998 333332 3455668899999999999987754 357899999999999999999999999
Q ss_pred ccCCceEEEEEcccc
Q 025982 82 PFYDKPMRIQYAKTK 96 (245)
Q Consensus 82 ~~~g~~i~v~~~~~~ 96 (245)
.|.||.|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.7e-15 Score=105.46 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=65.4
Q ss_pred CeEEEcCC----CcccCHHHHHHHHHHhhcccCCeEEE---EeCCCCCceeEEEEEecC----HHH----HHHHHH--HH
Q 025982 16 NTIYINNL----NEKVKIDQLKQSLHAVFKQFGTILEI---LAFKTLKHKGQAWLVFKD----VAS----ATAAVE--KM 78 (245)
Q Consensus 16 ~~l~V~nL----p~~~~~~~l~~~l~~~F~~~G~v~~i---~~~~~~~~kg~afV~F~~----~e~----A~~a~~--~l 78 (245)
++|||+|| |+.+++++ |.++|+.||.|.+| .++.||.++|||||+|.+ +++ |.+|+. .+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~----Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDIS----IKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHH----HHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHH----HHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 68999999 99999999 66999999999886 455689999999999996 433 888888 78
Q ss_pred cCCccCCceEEEEEccc
Q 025982 79 QGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 79 ~~~~~~g~~i~v~~~~~ 95 (245)
||..+.|++|+|.+-..
T Consensus 79 ng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TCEEETTEEEEEEECCT
T ss_pred cCCeecCcEEEEEECcc
Confidence 99999999999998654
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=9.1e-15 Score=111.59 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=67.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
..++|||+|||..+++++|+.+|+.||.|.+|.+..+. +|+|||+|.+.++|..|+..+ +..+.|++|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 35789999999999999999999999999999998743 699999999999999999855 5699999999999863
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=7.3e-15 Score=112.13 Aligned_cols=76 Identities=22% Similarity=0.434 Sum_probs=67.6
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEE
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQY 92 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~ 92 (245)
.++|||+|||.++++++ |+++|+.||.|..|++.+ ++.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+
T Consensus 109 ~~~l~V~nLp~~~t~~~----L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDD----IKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHH----HHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHH----HHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEE
Confidence 48999999999999999 779999999999986553 5789999999999999999999855 4589999999998
Q ss_pred ccc
Q 025982 93 AKT 95 (245)
Q Consensus 93 ~~~ 95 (245)
+..
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 764
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=1.3e-14 Score=101.55 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=66.4
Q ss_pred CCcEEEEeCCC--CC---CCHHHHHHHhccCCCeeEEEEecCC---------CeEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 025982 170 PNNILFVQNVP--HD---TTPMALQMFFSQFPGFKEVRMVEAK---------PGIAFVEYGDEMQATVAMQSLQSLKIGQ 235 (245)
Q Consensus 170 ~~~~l~v~nl~--~~---~~~~~L~~~f~~~G~v~~v~~~~~~---------~g~afV~f~~~~~A~~Al~~l~g~~~~g 235 (245)
++++|+|+|+- .. -.++||+..|++||.|.+|.++.++ +|++||+|.++++|.+|+..|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999994 22 2478999999999999999998753 3899999999999999999999999999
Q ss_pred eEeEEEEec
Q 025982 236 QQLLITYAK 244 (245)
Q Consensus 236 ~~i~v~~ak 244 (245)
|+|+|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999974
No 363
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.57 E-value=2.3e-14 Score=99.62 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=66.3
Q ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHhccCCCeeEEEEecCC-CeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 169 PPNNILFVQNVPHDT----------TPMALQMFFSQFPGFKEVRMVEAK-PGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 169 ~~~~~l~v~nl~~~~----------~~~~L~~~f~~~G~v~~v~~~~~~-~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
.++++|.+.|+-..- .++||+..|++||.|.+|.+.++. +|++||+|.+.++|.+|++.|||+.|+||+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 367889999994221 145889999999999999998764 799999999999999999999999999999
Q ss_pred eEEEEec
Q 025982 238 LLITYAK 244 (245)
Q Consensus 238 i~v~~ak 244 (245)
|+|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999974
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.3e-15 Score=102.38 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=58.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecC--------CCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEA--------KPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~--------~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
.+++|||+|||..+++++|+++|++||.|. +.++.+ .+|||||+|.++++|..|++.|+ .+.|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457799999999999999999999999999 777653 26899999999999999999983 2455555444
Q ss_pred E
Q 025982 242 Y 242 (245)
Q Consensus 242 ~ 242 (245)
.
T Consensus 84 ~ 84 (114)
T 2dnl_A 84 S 84 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=4.2e-14 Score=98.24 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCcccC------HHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 12 ISPNNTIYINNLNEKVK------IDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~------~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
..++++|.+.|+=.... .++|++-|++.|++||.|.+|.+.++. .+|+|||+|.+.++|.+|++.|||..|.|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999866544 578888899999999999999887653 58999999999999999999999999999
Q ss_pred ceEEEEEcccc
Q 025982 86 KPMRIQYAKTK 96 (245)
Q Consensus 86 ~~i~v~~~~~~ 96 (245)
|.|+|.|+...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998643
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=2.3e-14 Score=117.74 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=67.3
Q ss_pred CCCcEEEEeCC--CCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC---Ce--EeEEE
Q 025982 169 PPNNILFVQNV--PHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG---QQ--QLLIT 241 (245)
Q Consensus 169 ~~~~~l~v~nl--~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~--~i~v~ 241 (245)
.++.+|||+|+ +..+++++|+++|++||.|.+|.+.++ +|||||+|.+.++|..|++.|||..+. |+ +|++.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 47788999995 689999999999999999999988775 499999999999999999999998873 45 68999
Q ss_pred EecC
Q 025982 242 YAKK 245 (245)
Q Consensus 242 ~ak~ 245 (245)
|+++
T Consensus 95 ~~~~ 98 (345)
T 3tht_A 95 FVEK 98 (345)
T ss_dssp ECSS
T ss_pred Eeec
Confidence 9853
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.3e-14 Score=94.43 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=62.2
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEe
Q 025982 171 NNILFVQNVP-------HDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYA 243 (245)
Q Consensus 171 ~~~l~v~nl~-------~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~a 243 (245)
..+|.|.-.. ..+++++|+.+|++||.|.+|.++...+|||||+|.+.++|..|++.++ .+.|++|+|+||
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEc
Confidence 4456666543 4589999999999999999999987668999999999999999999755 467999999998
Q ss_pred cC
Q 025982 244 KK 245 (245)
Q Consensus 244 k~ 245 (245)
+.
T Consensus 88 ~~ 89 (100)
T 2d9o_A 88 EG 89 (100)
T ss_dssp SC
T ss_pred cC
Confidence 73
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=2.8e-14 Score=99.81 Aligned_cols=83 Identities=11% Similarity=0.232 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCcccC-HHHHHHHHHHhhcccCCeEEEEeCC-------CCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 13 SPNNTIYINNLNEKVK-IDQLKQSLHAVFKQFGTILEILAFK-------TLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~-~~~l~~~l~~~F~~~G~v~~i~~~~-------~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
+++++|+++|+-.... .++|.+-|++.|++||.|.+|.+.+ +++++|++||+|.+.++|.+|++.|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999953211 1345566889999999999986553 2457899999999999999999999999999
Q ss_pred CceEEEEEccc
Q 025982 85 DKPMRIQYAKT 95 (245)
Q Consensus 85 g~~i~v~~~~~ 95 (245)
||.|+|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=7e-15 Score=100.82 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=56.6
Q ss_pred CCCCCCCHHHHHHHh------------ccCCCeeEEEEecCC----CeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 178 NVPHDTTPMALQMFF------------SQFPGFKEVRMVEAK----PGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 178 nl~~~~~~~~L~~~f------------~~~G~v~~v~~~~~~----~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
||+..+++++|+.+| ++||.|.+|.+++++ +|+|||+|.++++|.+|+..|||+.++||+|+|+
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~ 101 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEE
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEE
Confidence 444445666665555 999999999999764 7999999999999999999999999999999999
Q ss_pred Ee
Q 025982 242 YA 243 (245)
Q Consensus 242 ~a 243 (245)
|+
T Consensus 102 ~s 103 (104)
T 1jmt_A 102 LS 103 (104)
T ss_dssp EC
T ss_pred Ec
Confidence 97
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=2e-14 Score=98.54 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=62.8
Q ss_pred EcCCCcccCHHHHH-------HHHHHhh-cccCCeEEEEeCC--CCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEE
Q 025982 20 INNLNEKVKIDQLK-------QSLHAVF-KQFGTILEILAFK--TLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMR 89 (245)
Q Consensus 20 V~nLp~~~~~~~l~-------~~l~~~F-~~~G~v~~i~~~~--~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~ 89 (245)
+.|||..+++++|+ +.|++.| ++||.|.+|.+.+ +++++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56778888888755 3345666 9999999997765 457899999999999999999999999999999999
Q ss_pred EEEc
Q 025982 90 IQYA 93 (245)
Q Consensus 90 v~~~ 93 (245)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=2.3e-13 Score=111.84 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=67.3
Q ss_pred CCCCCCeEEEcC--CCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC---C
Q 025982 11 EISPNNTIYINN--LNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY---D 85 (245)
Q Consensus 11 ~~~~~~~l~V~n--Lp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~---g 85 (245)
...|+++|||+| |+..+++++ |+++|++||.|..|.+.. +||||||+|.+.++|.+|++.|||..+. |
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~----L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQ----LLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHH----HHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred cCCCCCEEEEEcCCCCCCCCHHH----HHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 367889999999 578999999 779999999999988764 5899999999999999999999998873 4
Q ss_pred c--eEEEEEcc
Q 025982 86 K--PMRIQYAK 94 (245)
Q Consensus 86 ~--~i~v~~~~ 94 (245)
+ .|.|.|+.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 68888875
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.8e-13 Score=89.36 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCC-------cccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccC
Q 025982 12 ISPNNTIYINNLN-------EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFY 84 (245)
Q Consensus 12 ~~~~~~l~V~nLp-------~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~ 84 (245)
....++|.|.-.. ..+++++ |+++|++||.|..|.+. ++++|||||+|.+.++|..|++.++ .+.
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~----L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~ 78 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDV----LLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV--GLV 78 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHH----HHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC--BCS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHH----HHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC--CCC
Confidence 4556788888765 4589999 77999999999999877 4689999999999999999999744 467
Q ss_pred CceEEEEEccccc
Q 025982 85 DKPMRIQYAKTKS 97 (245)
Q Consensus 85 g~~i~v~~~~~~~ 97 (245)
|++|+|.|+....
T Consensus 79 g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 79 DNPLKISWLEGQP 91 (100)
T ss_dssp SSBCEEECSSCCC
T ss_pred CCeEEEEEccCCC
Confidence 9999999987654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.5e-12 Score=84.99 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=63.2
Q ss_pred CCCCcEEEEeCCC----CCCCH----HHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeE
Q 025982 168 APPNNILFVQNVP----HDTTP----MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL 239 (245)
Q Consensus 168 ~~~~~~l~v~nl~----~~~~~----~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 239 (245)
.||..+++|.-.+ ...-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||..++||.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 4577788888765 23333 6789999999999999999876 8999999999999998 999999999999
Q ss_pred EEEec
Q 025982 240 ITYAK 244 (245)
Q Consensus 240 v~~ak 244 (245)
|++++
T Consensus 80 V~lkt 84 (91)
T 2dnr_A 80 IALKS 84 (91)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99986
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.1e-12 Score=88.93 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=68.3
Q ss_pred CCCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcC-HHHHHHHHHHhC--CCeeCCeEeEEEE
Q 025982 167 PAPPNNILFVQNVPHD-TTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGD-EMQATVAMQSLQ--SLKIGQQQLLITY 242 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~-~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~-~~~A~~Al~~l~--g~~~~g~~i~v~~ 242 (245)
..++++.|+|+||+.. +++++|+++|+.||.|.+|.+..+.. .|||+|.+ +++|..|+.++| +..|.|..+.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 3468899999999988 99999999999999999999999985 89999999 899999999995 6888898888765
Q ss_pred e
Q 025982 243 A 243 (245)
Q Consensus 243 a 243 (245)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1e-11 Score=81.03 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCC----cccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCce
Q 025982 12 ISPNNTIYINNLN----EKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKP 87 (245)
Q Consensus 12 ~~~~~~l~V~nLp----~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~ 87 (245)
.+|..+|+|.-.+ ...-.++|...|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 5788899999887 356678888889999999999999988764 39999999999999999 9999999999
Q ss_pred EEEEEccc
Q 025982 88 MRIQYAKT 95 (245)
Q Consensus 88 i~v~~~~~ 95 (245)
|+|.++++
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999865
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.2e-11 Score=78.46 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=62.1
Q ss_pred CCCCCcEEEEeCCCCC-----CCH----HHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 025982 167 PAPPNNILFVQNVPHD-----TTP----MALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQ 237 (245)
Q Consensus 167 ~~~~~~~l~v~nl~~~-----~~~----~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 237 (245)
..||..+++|.-++.. +-. .+|.+.|+.||.|..++++.++ +||+|.+.++|.+|++ |||..++||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 3467788999877632 322 5689999999999999999875 9999999999999998 9999999999
Q ss_pred eEEEE
Q 025982 238 LLITY 242 (245)
Q Consensus 238 i~v~~ 242 (245)
|+|++
T Consensus 87 L~V~~ 91 (95)
T 1ufw_A 87 VKISG 91 (95)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99986
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=6.8e-11 Score=77.48 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=69.0
Q ss_pred CCCCCCCCeEEEcCCCc-----ccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCcc
Q 025982 9 GNEISPNNTIYINNLNE-----KVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPF 83 (245)
Q Consensus 9 ~~~~~~~~~l~V~nLp~-----~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~ 83 (245)
....+|..+|+|.-++. .+-.++|...|.+.|+.||.|..+++..+ -+||+|.+.++|.+|++ |||..+
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeee
Confidence 34578899999999874 46677788889999999999999887765 29999999999999999 999999
Q ss_pred CCceEEEEEcc
Q 025982 84 YDKPMRIQYAK 94 (245)
Q Consensus 84 ~g~~i~v~~~~ 94 (245)
.||.|+|.+-.
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998743
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=3.9e-10 Score=78.36 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCcc-cCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecC-HHHHHHHHHHHc--CCccCC
Q 025982 10 NEISPNNTIYINNLNEK-VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKD-VASATAAVEKMQ--GFPFYD 85 (245)
Q Consensus 10 ~~~~~~~~l~V~nLp~~-~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~-~e~A~~a~~~l~--~~~~~g 85 (245)
-..+++..|||+||+.. +++++ |.++|+.||.|..|.+.++.. .|||.|.+ .++|..|+..+| +..+.|
T Consensus 13 ~~~~~G~il~v~~l~~~~~sred----Lke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCRED----LHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHH----HHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred ccccCCeEEEEecCCCCcCCHHH----HHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 44678999999999999 99999 669999999999998876533 69999999 899999999995 788999
Q ss_pred ceEEEEEccccch
Q 025982 86 KPMRIQYAKTKSD 98 (245)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (245)
..++++......+
T Consensus 86 ~~~~~evL~GeeE 98 (121)
T 1owx_A 86 KEVTWEVLEGEVE 98 (121)
T ss_dssp SSEEEEECCHHHH
T ss_pred cEEEEEECCCHHH
Confidence 9999988765544
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=1.8e-09 Score=83.94 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=61.6
Q ss_pred CcEEEEeCCC-----CCCCHHHHHHHhccCCCeeEEEEecC---------CCeEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 025982 171 NNILFVQNVP-----HDTTPMALQMFFSQFPGFKEVRMVEA---------KPGIAFVEYGDEMQATVAMQSLQSLKIGQQ 236 (245)
Q Consensus 171 ~~~l~v~nl~-----~~~~~~~L~~~f~~~G~v~~v~~~~~---------~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 236 (245)
...+.+.|+- ..-.+++|...|++||.|.++.++.+ .+|++||+|.+.++|.+|++.|||+.|+||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3456666663 23456889999999999999999842 158999999999999999999999999999
Q ss_pred EeEEEEe
Q 025982 237 QLLITYA 243 (245)
Q Consensus 237 ~i~v~~a 243 (245)
+|.+.|+
T Consensus 204 ~i~~~~~ 210 (222)
T 3dxb_A 204 KVVAEVY 210 (222)
T ss_dssp BCEEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=5.9e-09 Score=81.07 Aligned_cols=82 Identities=12% Similarity=0.233 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCc-ccCHHHHHHHHHHhhcccCCeEEEEeC-------CCCCceeEEEEEecCHHHHHHHHHHHcCCccCC
Q 025982 14 PNNTIYINNLNE-KVKIDQLKQSLHAVFKQFGTILEILAF-------KTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD 85 (245)
Q Consensus 14 ~~~~l~V~nLp~-~~~~~~l~~~l~~~F~~~G~v~~i~~~-------~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g 85 (245)
+.+.+.+.|+-. .--.+++.+.|++.|+.||.|.+|.+. .+++++|++||+|.+.++|.+|+..|||..|.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 345555555532 222334455588999999999998654 244789999999999999999999999999999
Q ss_pred ceEEEEEccc
Q 025982 86 KPMRIQYAKT 95 (245)
Q Consensus 86 ~~i~v~~~~~ 95 (245)
|.|.+.++..
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999999764
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=5.9e-09 Score=69.66 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=66.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccC-----CCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQF-----PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~-----G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
..+|-+-|||+.+++..|+.+..++ |.+..|.+.++- +-|+|+|.+...|.+|.-.|+|..|.||+|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 4569999999999999999999999 999999999986 799999999999999999999999999999986
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=7.2e-07 Score=59.65 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhccc-----CCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQF-----GTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~-----G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
....++|=+-|||..+++.. |+.+.+.+ |.+..|.+..+ -+-|+|+|.+...|-+|.-.|+|..|.|+
T Consensus 18 ~~~~rtiaL~~ipDtvndar----Ir~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSL----ICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHH----HHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred ccCCcEEEEecCCCCCCHHH----HHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCe
Confidence 34468899999999999999 55777777 98988887765 36799999999999999988999999999
Q ss_pred eEEEEEc
Q 025982 87 PMRIQYA 93 (245)
Q Consensus 87 ~i~v~~~ 93 (245)
+|+|.-.
T Consensus 91 ~Lr~gTv 97 (117)
T 2l9w_A 91 VIRSGTI 97 (117)
T ss_dssp EEEEECH
T ss_pred EEEecCH
Confidence 9999764
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=1e-06 Score=58.71 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=66.9
Q ss_pred CeEEEcCCCccc-CHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEEEEcc
Q 025982 16 NTIYINNLNEKV-KIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRIQYAK 94 (245)
Q Consensus 16 ~~l~V~nLp~~~-~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v~~~~ 94 (245)
++|+|.||+.++ ..+++++.++++|..|+++......++-+ -..|.|.+.++|.+|-..||+..|.|+.|+|-++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---EEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 579999999988 77888888999999999888876555432 46799999999999999999999999999999986
Q ss_pred c
Q 025982 95 T 95 (245)
Q Consensus 95 ~ 95 (245)
+
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.26 E-value=2.7e-06 Score=56.70 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=61.3
Q ss_pred cEEEEeCCCCCC----C-HHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEec
Q 025982 172 NILFVQNVPHDT----T-PMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAK 244 (245)
Q Consensus 172 ~~l~v~nl~~~~----~-~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak 244 (245)
++|++.||+..+ . .+.++++|..|+.+......++=+ -..|.|.++++|.+|...||+..|.|++|+|-||+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 459999998544 1 357899999999988887777643 57899999999999999999999999999999874
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=5.4e-05 Score=50.17 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=56.8
Q ss_pred CCCCCeEEEcCCCcccCHHHHHHHHHHhhcc-----cCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCc
Q 025982 12 ISPNNTIYINNLNEKVKIDQLKQSLHAVFKQ-----FGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDK 86 (245)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~-----~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~ 86 (245)
....++|.|.|||+.++++.| .-+|+. =|.|..|.... +.|+|.|.+.+.|+..++ -....|++.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L----~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~ 74 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELL----TLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGA 74 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHH----HHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSS
T ss_pred ccCccEEEEECCCCCCChhHh----eEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCe
Confidence 345789999999999998884 455654 26888886653 579999999999999998 346778888
Q ss_pred eEEEEEc
Q 025982 87 PMRIQYA 93 (245)
Q Consensus 87 ~i~v~~~ 93 (245)
+|.|...
T Consensus 75 ~LsV~P~ 81 (104)
T 2dhx_A 75 QLSLRPA 81 (104)
T ss_dssp BCEEEEC
T ss_pred EEEEEcC
Confidence 8988664
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.06 E-value=2.1e-05 Score=51.51 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCCCCCCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHc
Q 025982 8 QGNEISPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79 (245)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~ 79 (245)
.+........++| ++|+.+.-.| |+++|+.||.|.--++..| .|||.|.+.+.|..|+..+.
T Consensus 9 ~d~~p~r~HVf~l-~FP~ewKt~D----I~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 9 PDLQPKRDHVLHV-TFPKEWKTSD----LYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SCCCCCCCSEEEE-ECCTTCCHHH----HHHHHTTTCSCCCEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEE-eCChhhhhHH----HHHHhhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 3344455677778 9999999999 7799999998855455544 79999999999999999764
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.95 E-value=6.9e-05 Score=49.02 Aligned_cols=63 Identities=10% Similarity=0.193 Sum_probs=56.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-------CeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
+.|.|++||+.+|++++.+.++.+..+.+..+++++ ..-|+|.|.+.+++..-.+.++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 358999999999999999999999999888888754 468999999999999999999998876
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.80 E-value=0.00011 Score=47.96 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=56.0
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-----CCCceeEEEEEecCHHHHHHHHHHHcCCccCC---c-
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-----TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD---K- 86 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-----~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g---~- 86 (245)
++|.|++||+.+|+++ +.+.++.+..+....... .....+-|||.|.+.+++......++|..|.+ .
T Consensus 2 ~KvVIRrLPP~Lteee----F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~ 77 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQ----LQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQE 77 (91)
T ss_dssp CEEEEEEECTTCCHHH----HHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCE
T ss_pred cEEEEeCCCCCCCHHH----HHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCE
Confidence 5799999999999999 557677777665543322 11233679999999999999999999988853 2
Q ss_pred -eEEEEEcc
Q 025982 87 -PMRIQYAK 94 (245)
Q Consensus 87 -~i~v~~~~ 94 (245)
+-.|++|.
T Consensus 78 ~~a~VE~AP 86 (91)
T 1uw4_A 78 YPAIVEFAP 86 (91)
T ss_dssp EECEEEECS
T ss_pred eeeEEEEcC
Confidence 44566664
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00045 Score=45.78 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC-----CCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEE
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQF-----PGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLIT 241 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~-----G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 241 (245)
...+|.|.|||..+.++.|.-+|++- |.|..+...+ +-|+|+|.+...|++.|++ ..+.|.+.+|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 46789999999999999999999862 5689998876 5799999999999999974 3567888888775
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.68 E-value=3.5e-05 Score=50.59 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=46.4
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHc
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~ 79 (245)
...++| ++|+.+.-.| |+++|+.||.|.--++..| .|||.|.+.+.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~D----i~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSD----LYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHH----HHHHTTTSEEEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHH----HHHHHhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 456777 9999999999 7899999998755566554 79999999999999999765
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.55 E-value=0.00047 Score=45.14 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~ 229 (245)
...+++| ++|..+.-.||.++|++||.| .|+-+.+ .-|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--CeEEEEecCHHHHHHHHHhcc
Confidence 4567777 999999999999999999864 2333444 379999999999999998773
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.0016 Score=44.52 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=55.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeC-CeEeEEEE
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIG-QQQLLITY 242 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~ 242 (245)
.+-+.|-+.|... -..+...|++||.|.+.... ....+..|.|.+..+|++||. .||..++ +-.|-|..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 4568888888664 66778899999999887763 334799999999999999998 6999998 46666654
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.00069 Score=46.33 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=59.5
Q ss_pred CCCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCC-ceEEEE
Q 025982 13 SPNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYD-KPMRIQ 91 (245)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g-~~i~v~ 91 (245)
...+-|-|-|.|+..... +.+.|++||.|.+..... ..++-.|.|.+..+|.+|+. .||..+.| ..|-|.
T Consensus 22 ~~~~wVtVFGFp~~~~~~-----VL~~F~~~G~Iv~~~~~~---~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASASY-----ILLQFAQYGNILKHVMSN---TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp GGGGEEEEECCCGGGHHH-----HHHHHHTTSCEEEEEECS---SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCEEEEECCCHHHHHH-----HHHHHHhhCcEEEeccCC---CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 346789999999996554 458999999999987632 35799999999999999999 79999985 577777
Q ss_pred Eccc
Q 025982 92 YAKT 95 (245)
Q Consensus 92 ~~~~ 95 (245)
+...
T Consensus 93 p~~d 96 (119)
T 1wwh_A 93 PCID 96 (119)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7543
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.30 E-value=0.00082 Score=44.17 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCC-----CCCceeEEEEEecCHHHHHHHHHHHcCCccCC---c
Q 025982 15 NNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFK-----TLKHKGQAWLVFKDVASATAAVEKMQGFPFYD---K 86 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~-----~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g---~ 86 (245)
+-+|.|+.||+.+|+++ +.+.++.+-.+....... ....-.-|||.|.+.++.....+.++|..|.+ .
T Consensus 9 ~~KvVIRrLPP~Ltee~----F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQ----LEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCEEEECCCSCSCHHH----HTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred ceeEEEeCCCCCCCHHH----HHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 46899999999999999 445555543443322211 11122579999999999999999999987752 2
Q ss_pred --eEEEEEcc
Q 025982 87 --PMRIQYAK 94 (245)
Q Consensus 87 --~i~v~~~~ 94 (245)
+-.|++|.
T Consensus 85 ~~~a~VE~AP 94 (97)
T 2l08_A 85 EYPAVVEFAP 94 (97)
T ss_dssp EEEEEEEECC
T ss_pred EeeeEEEecC
Confidence 55567664
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.28 E-value=0.00057 Score=44.93 Aligned_cols=64 Identities=9% Similarity=0.200 Sum_probs=53.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCC-------CeEEEEEEcCHHHHHHHHHHhCCCeeC
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAK-------PGIAFVEYGDEMQATVAMQSLQSLKIG 234 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~-------~g~afV~f~~~~~A~~Al~~l~g~~~~ 234 (245)
+-.|.|+.||+.+|++++.+.++..-.+.+..+++++ ..-|+|.|.+.++.....+.++|..|-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3459999999999999999999887677666666543 246999999999999999999997775
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.00065 Score=44.60 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=45.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhC
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQ 229 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~ 229 (245)
..+++| ++|..+.-.||..+|++||. ..|.-+.+ .-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD--TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET--TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC--CeEEEEecCHHHHHHHHHhcc
Confidence 456777 99999999999999999995 33444455 379999999999999999774
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.98 E-value=0.00082 Score=46.64 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=56.3
Q ss_pred CeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEE-eCCC-----------C-----CceeEEEEEecCHHHHHHHHHHH
Q 025982 16 NTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEIL-AFKT-----------L-----KHKGQAWLVFKDVASATAAVEKM 78 (245)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~-~~~~-----------~-----~~kg~afV~F~~~e~A~~a~~~l 78 (245)
.-|.|=|.|++.+..- .+.|++||.|.+-. ..++ . ...++-.|.|.+..+|.+|+. .
T Consensus 8 ~~VtVFGFp~~~~~~V-----I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 8 LAILVFGYPETMANQV-----IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp CEEEEECCCGGGHHHH-----HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred eEEEEEecCHHHHHHH-----HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 4577888888876654 48999999997721 1110 0 124577899999999999999 7
Q ss_pred cCCccCCceEEEEEccc
Q 025982 79 QGFPFYDKPMRIQYAKT 95 (245)
Q Consensus 79 ~~~~~~g~~i~v~~~~~ 95 (245)
||..|.|..|-|.+..+
T Consensus 82 NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCeEeCcEEEEEEECCH
Confidence 99999999999988754
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.67 E-value=0.0011 Score=56.34 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=42.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHH
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQ 226 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~ 226 (245)
+.|+|. .|...++.+|.+.|++||.|.++.+..++.-||+|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 459997 799999999999999999999999998876799999999998887764
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.54 E-value=0.003 Score=43.82 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=51.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeeE-EEE----------------ecC--CCeEEEEEEcCHHHHHHHHHHhCCCe
Q 025982 172 NILFVQNVPHDTTPMALQMFFSQFPGFKE-VRM----------------VEA--KPGIAFVEYGDEMQATVAMQSLQSLK 232 (245)
Q Consensus 172 ~~l~v~nl~~~~~~~~L~~~f~~~G~v~~-v~~----------------~~~--~~g~afV~f~~~~~A~~Al~~l~g~~ 232 (245)
.-+.|-+.|... ...+...|++||.|.. +.. ++. ...+.-|+|+++.+|.+||+ .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 346676776544 4456678999999854 211 111 13588999999999999998 79999
Q ss_pred eCCeEeEEEEe
Q 025982 233 IGQQQLLITYA 243 (245)
Q Consensus 233 ~~g~~i~v~~a 243 (245)
|.|..|-|..-
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99998887653
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.89 E-value=0.0036 Score=53.31 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=41.5
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHH
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVE 76 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~ 76 (245)
+.+.|+|. .|...++++ |.++|++||+|..+...++. .-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~----l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENK----FLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CH----HHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHH----HHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 35789998 799999999 77999999999998776542 2599999999999997765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.54 E-value=0.15 Score=44.15 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=46.2
Q ss_pred CCCeEEEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC
Q 025982 14 PNNTIYINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~ 80 (245)
....++|+ +|..+...+ |.++|+.||.+.-.++.. ..|||.|.+.+.|..++..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~----i~~~fs~fg~v~V~widd-----t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSD----LYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHH----HHHHGGGGCCCEEEECSS-----SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHH----HHHHHHhcCCEEEEEEcC-----CeEEEEECCHHHHHHHHHHHHh
Confidence 35567776 999999988 779999999885555554 3799999999999999998753
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.18 E-value=0.21 Score=30.99 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=43.0
Q ss_pred EEEEeCCC--CCCCHHHHHHHhccCCCe-----eEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCCeeCCeEeEEEEecC
Q 025982 173 ILFVQNVP--HDTTPMALQMFFSQFPGF-----KEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 245 (245)
Q Consensus 173 ~l~v~nl~--~~~~~~~L~~~f~~~G~v-----~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ak~ 245 (245)
++++ |+. ..+...+|..++..-+.+ -.|.+.. .+.||+-.. ..|..+++.|++..+.|+++.|..++|
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d---~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~~ 76 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD---NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKANK 76 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS---SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC-
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC---CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECCC
Confidence 3555 343 556667777777654443 4455533 488999877 568889999999999999999999875
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.16 E-value=0.94 Score=39.16 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=45.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCC
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQS 230 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g 230 (245)
..+++|+ +|..+...+|.+.|+.||.| +|..+.+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--CeEEEEECCHHHHHHHHHHHHh
Confidence 4577786 88899999999999999964 4444444 4799999999999999998853
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=74.34 E-value=14 Score=23.45 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=46.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHh
Q 025982 170 PNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSL 228 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l 228 (245)
.++.+-+-|+|..+-..++.-.....|--.++..+. |.|.+.|.+.++-..|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid---gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID---GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS---SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec---CeeEEEecCChHHHHHHHHH
Confidence 467788899998888888776667778767777765 57999999999999999887
No 405
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=70.86 E-value=12 Score=24.47 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=34.0
Q ss_pred cccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHHH
Q 025982 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a~ 75 (245)
...+..+|++.|..++..-..+.-|.-.+ .|++.|||.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56688999999999988765555553222 4557777755 67777776653
No 406
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=69.18 E-value=13 Score=24.32 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=33.0
Q ss_pred cccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHH
Q 025982 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~ 73 (245)
...+..+|++.|..++..-..+.-|.-.+ .|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56688999999999988765554443222 4567788855 677777754
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=66.81 E-value=17 Score=24.05 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=33.0
Q ss_pred cccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHH
Q 025982 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a 74 (245)
...+..+|++.|..++..-..+.-|.-.+ .|++.|||.| |.+.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45678999999999988754444443222 4567788855 6777777654
No 408
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=58.98 E-value=15 Score=23.90 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=30.7
Q ss_pred cccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHH
Q 025982 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~ 73 (245)
...+..+|++.|..++..-..+.-|.-.+ .|++.|||.| |.+.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45688999999999988754544443333 3456677755 555555544
No 409
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=55.99 E-value=37 Score=23.85 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=32.7
Q ss_pred cccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHH
Q 025982 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a 74 (245)
...+..||++.|..++..-..+.-|.-.+ .|.+.|||.| |.+.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 45678899999999887744444443333 3557778866 6777777654
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=53.94 E-value=35 Score=24.67 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=32.0
Q ss_pred EEEEeCCCC-C--------CCHHHHHHHh--ccCCCeeEEEEecCC--CeEEEEEEcCHHH
Q 025982 173 ILFVQNVPH-D--------TTPMALQMFF--SQFPGFKEVRMVEAK--PGIAFVEYGDEMQ 220 (245)
Q Consensus 173 ~l~v~nl~~-~--------~~~~~L~~~f--~~~G~v~~v~~~~~~--~g~afV~f~~~~~ 220 (245)
+.+|-|+|. . .+..+|++.| +.|..++-..+.-.. .|+++|.|..--.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 367778885 2 3457899977 999886533333222 6899999976443
No 411
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=46.63 E-value=53 Score=20.78 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHhhcccC-CeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcC
Q 025982 28 KIDQLKQSLHAVFKQFG-TILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQG 80 (245)
Q Consensus 28 ~~~~l~~~l~~~F~~~G-~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~ 80 (245)
.|..++..|.+.....| .|.+|.... ..+||-||++...++...++....+
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 45555555665443333 366666653 3789999999999988888876655
No 412
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=42.76 E-value=52 Score=22.68 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=30.5
Q ss_pred cccCHHHHHHHHHHhhcccCCeEEEEeCC----CCCceeEEEEEecCHHHHHHH
Q 025982 25 EKVKIDQLKQSLHAVFKQFGTILEILAFK----TLKHKGQAWLVFKDVASATAA 74 (245)
Q Consensus 25 ~~~~~~~l~~~l~~~F~~~G~v~~i~~~~----~~~~kg~afV~F~~~e~A~~a 74 (245)
...+..||++.|..++..=..+..|.-.+ .|.+.|||.| |.+.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 34678898888887776543444442222 4557777765 6777776654
No 413
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.78 E-value=5.5 Score=28.13 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=17.8
Q ss_pred HHHHHHhccCCCeeEEEEecCCCeEEEEEEc
Q 025982 186 MALQMFFSQFPGFKEVRMVEAKPGIAFVEYG 216 (245)
Q Consensus 186 ~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~ 216 (245)
+|+-++|...|.|++... .+||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~---~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV---RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET---TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC---CCCeeEEeeC
Confidence 455567777787775543 4699999976
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.99 E-value=75 Score=22.91 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=30.9
Q ss_pred eEEEcCCCcc---------cCHHHHHHHHHHhh--cccCCeEEEEeCCCCCceeEEEEEecCHHH
Q 025982 17 TIYINNLNEK---------VKIDQLKQSLHAVF--KQFGTILEILAFKTLKHKGQAWLVFKDVAS 70 (245)
Q Consensus 17 ~l~V~nLp~~---------~~~~~l~~~l~~~F--~~~G~v~~i~~~~~~~~kg~afV~F~~~e~ 70 (245)
.+.|-|+|.. .+..+ |.+.| ..|.++....+....-..|+|.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~----l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSK----LRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHH----HHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHH----HHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 3556677762 33456 55655 888777654333333367899999976543
No 415
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.55 E-value=77 Score=19.92 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=36.9
Q ss_pred EEcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHH
Q 025982 19 YINNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAV 75 (245)
Q Consensus 19 ~V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~ 75 (245)
|+=-.+.+++..+|+++++.+|.- .|..|.........--|+|.+..-.+|....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~V--kV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNV--KVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTC--CEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCC--CceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 333468899999999999999974 5777643322112235999998776666543
No 416
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=32.19 E-value=66 Score=20.16 Aligned_cols=52 Identities=8% Similarity=0.167 Sum_probs=35.0
Q ss_pred EcCCCcccCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHH
Q 025982 20 INNLNEKVKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATA 73 (245)
Q Consensus 20 V~nLp~~~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~ 73 (245)
+=..+.+++..+|+++++.+|.- .|..|.........--|+|.+..-.+|..
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf~V--kV~~VNT~~~~~~~KKA~VtL~~g~~aid 77 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQYDV--TVEQVNTQNTMDGEKKAVVRLSEDDDAQE 77 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCC--CEEEEEEEECTTSSEEEEEEECTTSCHHH
T ss_pred EEEECCCCCHHHHHHHHHHHhCC--CceEEEeeecCCCceEEEEEECCCCcHHH
Confidence 33468899999999999999974 57776433322222358888876555443
No 417
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.31 E-value=35 Score=20.30 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=13.4
Q ss_pred CCeEEEEeCCCCCceeEEEEEecC
Q 025982 44 GTILEILAFKTLKHKGQAWLVFKD 67 (245)
Q Consensus 44 G~v~~i~~~~~~~~kg~afV~F~~ 67 (245)
|.|..|... +..|||.|.+
T Consensus 28 GtV~kV~~~-----~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSA-----REVCLVQFED 46 (68)
T ss_dssp EEEEEEETT-----TTEEEEEETT
T ss_pred eEEEEEecC-----CcEEEEEEcc
Confidence 677666432 5689999985
No 418
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=26.87 E-value=1.2e+02 Score=19.09 Aligned_cols=57 Identities=7% Similarity=0.034 Sum_probs=41.5
Q ss_pred EEEcCCCcccCHHHHHHHHHHhhccc-CCeEEE-EeCCCCCceeEEEEEecCHHHHHHHHHHHc
Q 025982 18 IYINNLNEKVKIDQLKQSLHAVFKQF-GTILEI-LAFKTLKHKGQAWLVFKDVASATAAVEKMQ 79 (245)
Q Consensus 18 l~V~nLp~~~~~~~l~~~l~~~F~~~-G~v~~i-~~~~~~~~kg~afV~F~~~e~A~~a~~~l~ 79 (245)
+.+-.+|.+.+-++|.+.|++.|.-. +....+ +....| -+|.+.+.++-..|++.+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHHH
Confidence 55666789999999999999999853 332234 444433 4589999999999988443
No 419
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.95 E-value=1e+02 Score=17.64 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=44.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeeEEEEecCCCeEEEEEEcCHHHHHHHHHHhCCC
Q 025982 171 NNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSL 231 (245)
Q Consensus 171 ~~~l~v~nl~~~~~~~~L~~~f~~~G~v~~v~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 231 (245)
..++.|.++....-...+...+.. ..|..+.+-... +-+.|.|.+.++...+++.+ |+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~-~~~~v~~~~~~~i~~~i~~~-Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE-AVVAGNKEDVDKYIKAVEAA-GY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE-EEEEEEGGGHHHHHHHHHHT-TC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC-CEEEEEECCHHHHHHHHHHc-CC
Confidence 356889999988888889988888 778877776554 67888888666677777754 44
No 420
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.68 E-value=44 Score=19.88 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=13.1
Q ss_pred CCeEEEEeCCCCCceeEEEEEecC
Q 025982 44 GTILEILAFKTLKHKGQAWLVFKD 67 (245)
Q Consensus 44 G~v~~i~~~~~~~~kg~afV~F~~ 67 (245)
|.|..|.. .+|.|+|.|.+
T Consensus 32 gtI~~V~~-----~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKINI-----LKQSCFIIFED 50 (66)
T ss_dssp EEEEEEET-----TTTEEEEEETT
T ss_pred eEEEEEcc-----CCcEEEEEEcc
Confidence 56666633 25799999975
No 421
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=24.44 E-value=37 Score=20.79 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=13.4
Q ss_pred CCeEEEEeCCCCCceeEEEEEecC
Q 025982 44 GTILEILAFKTLKHKGQAWLVFKD 67 (245)
Q Consensus 44 G~v~~i~~~~~~~~kg~afV~F~~ 67 (245)
|.|.+|... +..|+|.|.+
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFED 63 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETT
T ss_pred EEEEEeccC-----CCEEEEEEcC
Confidence 677666432 4689999986
No 422
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=24.15 E-value=1.5e+02 Score=19.17 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=43.4
Q ss_pred CCeEEEcCCCcccCHHH--HHHH----HHHhhcccC-----CeEEE-EeCC----CCCceeEEEEEecCHHH---HHHHH
Q 025982 15 NNTIYINNLNEKVKIDQ--LKQS----LHAVFKQFG-----TILEI-LAFK----TLKHKGQAWLVFKDVAS---ATAAV 75 (245)
Q Consensus 15 ~~~l~V~nLp~~~~~~~--l~~~----l~~~F~~~G-----~v~~i-~~~~----~~~~kg~afV~F~~~e~---A~~a~ 75 (245)
.+.|.|.|+|..-.+.. +.+. |.+.|-..+ .|.++ +... .......-.|.|....+ ..+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 46899999998733222 2333 344443343 35554 2221 11233467788877665 44444
Q ss_pred HHHcCCccCCceEEEE
Q 025982 76 EKMQGFPFYDKPMRIQ 91 (245)
Q Consensus 76 ~~l~~~~~~g~~i~v~ 91 (245)
.......+.|.+|++.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 4455688889999874
No 423
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=22.51 E-value=27 Score=19.70 Aligned_cols=26 Identities=15% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEcCCCcccCHHHHHHHHHHhhcccC
Q 025982 19 YINNLNEKVKIDQLKQSLHAVFKQFG 44 (245)
Q Consensus 19 ~V~nLp~~~~~~~l~~~l~~~F~~~G 44 (245)
|+.|+|..+.-..|++.|+.+.+..|
T Consensus 42 flenvprgtktahirealrryieeig 67 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRYIEEIG 67 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCccchHHHHHHHHHHHHHhc
Confidence 45688888888888888877766655
No 424
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=20.93 E-value=1.8e+02 Score=19.12 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.2
Q ss_pred ceeEEEEEecCHH-----HHHHHHHHHcCC
Q 025982 57 HKGQAWLVFKDVA-----SATAAVEKMQGF 81 (245)
Q Consensus 57 ~kg~afV~F~~~e-----~A~~a~~~l~~~ 81 (245)
..||.||++.-.+ ++-..+....|.
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV 90 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGI 90 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTC
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCc
Confidence 5699999998776 677777766653
No 425
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.88 E-value=1.6e+02 Score=18.10 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHhhcccCCeEEEEeCCCCCceeEEEEEecCHHHHHHHHHHHcCCccCCceEEE
Q 025982 27 VKIDQLKQSLHAVFKQFGTILEILAFKTLKHKGQAWLVFKDVASATAAVEKMQGFPFYDKPMRI 90 (245)
Q Consensus 27 ~~~~~l~~~l~~~F~~~G~v~~i~~~~~~~~kg~afV~F~~~e~A~~a~~~l~~~~~~g~~i~v 90 (245)
-++++|++||.++-..--.|. .+|-.++.+.-.+|.+..+...+.-++-+|
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 488999988876654444443 235556788888888866666666444443
No 426
>2lvl_A SPAI; lantibiotic SELF-immunity protein, subtilin, immune system, lantibiotic-binding-protein; NMR {Bacillus subtilis}
Probab=20.32 E-value=52 Score=21.05 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=31.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHh-------------ccCCCeeEEEEecCCCeEEEEEEcC
Q 025982 170 PNNILFVQNVPHDTTPMALQMFF-------------SQFPGFKEVRMVEAKPGIAFVEYGD 217 (245)
Q Consensus 170 ~~~~l~v~nl~~~~~~~~L~~~f-------------~~~G~v~~v~~~~~~~g~afV~f~~ 217 (245)
-+.+.||-+-...+++++|+.-+ -+||.|-+.+-.++.+.-.+|+|..
T Consensus 55 ig~tffvdgdgkrwseeelkepyi~~~pd~ir~k~p~rygkvyst~e~~d~kdeiive~n~ 115 (128)
T 2lvl_A 55 IGQTFFVDGDGKRWSEEELKEPYISNNPDEIREKKPLRYGKVYSTNEDSDAKDEIIVEFNR 115 (128)
T ss_dssp CCCEEEECSSCCBCCHHHHSSCSSCSCTTTCCCCEEEEEEEEEEESCCSSCCCEEEEEETT
T ss_pred eccEEEEcCCCcccCHhHhcCCcccCCHHHhhhcCCccccceecccCCCCccceEeeecch
Confidence 45679999988999999997543 1334444443344446677888754
Done!