Your job contains 1 sequence.
>025983
MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
DIRYS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025983
(245 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076259 - symbol:AT3G10330 species:3702 "Arabi... 1160 8.8e-118 1
TAIR|locus:2062703 - symbol:TFIIB "transcription factor I... 1048 6.5e-106 1
FB|FBgn0004915 - symbol:TfIIB "Transcription factor IIB" ... 516 1.5e-49 1
UNIPROTKB|F1NXP2 - symbol:GTF2B "Uncharacterized protein"... 516 1.5e-49 1
ZFIN|ZDB-GENE-030131-3544 - symbol:gtf2b "general transcr... 509 8.5e-49 1
UNIPROTKB|F2Z4J6 - symbol:LOC786656 "Uncharacterized prot... 505 2.3e-48 1
UNIPROTKB|Q2KIN8 - symbol:GTF2B "Transcription initiation... 505 2.3e-48 1
UNIPROTKB|E2RPG1 - symbol:GTF2B "Uncharacterized protein"... 505 2.3e-48 1
UNIPROTKB|Q00403 - symbol:GTF2B "Transcription initiation... 505 2.3e-48 1
UNIPROTKB|F2Z5J6 - symbol:GTF2B "Uncharacterized protein"... 505 2.3e-48 1
MGI|MGI:2385191 - symbol:Gtf2b "general transcription fac... 505 2.3e-48 1
RGD|619735 - symbol:Gtf2b "general transcription factor I... 505 2.3e-48 1
UNIPROTKB|B1APE2 - symbol:GTF2B "Transcription initiation... 477 2.1e-45 1
UNIPROTKB|B1APE1 - symbol:GTF2B "Transcription initiation... 475 3.4e-45 1
TAIR|locus:2093852 - symbol:pBRP2 "plant-specific TFIIB-r... 452 9.3e-43 1
WB|WBGene00006648 - symbol:ttb-1 species:6239 "Caenorhabd... 452 9.3e-43 1
DICTYBASE|DDB_G0290929 - symbol:gtf2b "transcription init... 445 5.2e-42 1
POMBASE|SPAC16E8.16 - symbol:SPAC16E8.16 "transcription f... 400 3.0e-37 1
CGD|CAL0001439 - symbol:SUA71 species:5476 "Candida albic... 340 6.9e-31 1
ASPGD|ASPL0000072123 - symbol:AN4928 species:162425 "Emer... 334 3.0e-30 1
CGD|CAL0005818 - symbol:SUA72 species:5476 "Candida albic... 320 9.1e-29 1
UNIPROTKB|Q59K82 - symbol:SUA72 "Likely transcription fac... 320 9.1e-29 1
SGD|S000006290 - symbol:SUA7 "Transcription factor TFIIB"... 308 1.7e-27 1
TAIR|locus:2139227 - symbol:AT4G10680 species:3702 "Arabi... 244 1.0e-20 1
GENEDB_PFALCIPARUM|PFA0525w - symbol:PFA0525w "transcript... 223 3.3e-18 1
UNIPROTKB|Q8I237 - symbol:PFA_0525w "Transcription initia... 223 3.3e-18 1
TAIR|locus:2082583 - symbol:AT3G57370 species:3702 "Arabi... 210 9.3e-17 1
TAIR|locus:2157270 - symbol:AT5G39230 species:3702 "Arabi... 128 3.6e-08 1
TAIR|locus:2115255 - symbol:PBRP "plant-specific TFIIB-re... 136 5.4e-07 2
WB|WBGene00000271 - symbol:brf-1 species:6239 "Caenorhabd... 108 1.1e-06 2
MGI|MGI:1919558 - symbol:Brf1 "BRF1 homolog, subunit of R... 82 0.00026 2
UNIPROTKB|Q92994 - symbol:BRF1 "Transcription factor IIIB... 81 0.00044 2
FB|FBgn0038499 - symbol:Brf "Brf" species:7227 "Drosophil... 90 0.00052 2
MGI|MGI:1913903 - symbol:Brf2 "BRF2, subunit of RNA polym... 87 0.00059 2
UNIPROTKB|F1NQ85 - symbol:BRF1 "Uncharacterized protein" ... 83 0.00077 2
>TAIR|locus:2076259 [details] [associations]
symbol:AT3G10330 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AC009400 HOGENOM:HOG000108634 KO:K03124
ProtClustDB:CLSN2683788 InterPro:IPR023486 EMBL:AY050421
EMBL:AY060526 EMBL:AY087850 EMBL:Z34661 IPI:IPI00519983
RefSeq:NP_187644.1 UniGene:At.199 ProteinModelPortal:Q9SS44
SMR:Q9SS44 STRING:Q9SS44 PaxDb:Q9SS44 PRIDE:Q9SS44
EnsemblPlants:AT3G10330.1 GeneID:820195 KEGG:ath:AT3G10330
TAIR:At3g10330 InParanoid:Q9SS44 OMA:SNDDQNG PhylomeDB:Q9SS44
Genevestigator:Q9SS44 Uniprot:Q9SS44
Length = 312
Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
Identities = 221/245 (90%), Positives = 230/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEF 240
KEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N SEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>TAIR|locus:2062703 [details] [associations]
symbol:TFIIB "transcription factor IIB" species:3702
"Arabidopsis thaliana" [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 EMBL:AC002510 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:U31096 EMBL:AY093060 EMBL:AY128769
EMBL:AY086647 IPI:IPI00524047 PIR:T00819 RefSeq:NP_181694.1
UniGene:At.10174 ProteinModelPortal:P48512 SMR:P48512 IntAct:P48512
STRING:P48512 PaxDb:P48512 PRIDE:P48512 EnsemblPlants:AT2G41630.1
GeneID:818761 KEGG:ath:AT2G41630 TAIR:At2g41630
HOGENOM:HOG000108634 InParanoid:P48512 KO:K03124 OMA:WRAFDPD
PhylomeDB:P48512 ProtClustDB:CLSN2683788 Genevestigator:P48512
InterPro:IPR023486 Uniprot:P48512
Length = 312
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 198/245 (80%), Positives = 218/245 (88%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEF 240
KEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N SEEF
Sbjct: 181 KEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>FB|FBgn0004915 [details] [associations]
symbol:TfIIB "Transcription factor IIB" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS;IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0051101
"regulation of DNA binding" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
EMBL:AE014134 GO:GO:0046872 GO:GO:0008270 GO:GO:0006357
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0051101 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0001174 KO:K03124 InterPro:IPR023486
GeneTree:ENSGT00390000006671 EMBL:M88164 EMBL:M91081 EMBL:U02879
EMBL:U35148 EMBL:BT011459 EMBL:BT015269 PIR:A42695
RefSeq:NP_476888.1 UniGene:Dm.4476 ProteinModelPortal:P29052
SMR:P29052 DIP:DIP-17603N IntAct:P29052 MINT:MINT-900118
STRING:P29052 PaxDb:P29052 PRIDE:P29052 EnsemblMetazoa:FBtr0080025
EnsemblMetazoa:FBtr0333489 GeneID:34430 KEGG:dme:Dmel_CG5193
CTD:34430 FlyBase:FBgn0004915 InParanoid:P29052 OMA:CNDETER
OrthoDB:EOG4N02WP PhylomeDB:P29052 GenomeRNAi:34430 NextBio:788458
Bgee:P29052 GermOnline:CG5193 Uniprot:P29052
Length = 315
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 116/238 (48%), Positives = 149/238 (62%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N + E DI
Sbjct: 192 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>UNIPROTKB|F1NXP2 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:AADN02012841 IPI:IPI00571339 Ensembl:ENSGALT00000010015
Uniprot:F1NXP2
Length = 306
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 114/238 (47%), Positives = 149/238 (62%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 5 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 64
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 65 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRN 123
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 124 IVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 182
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNLG+ + E D+
Sbjct: 183 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 234
>ZFIN|ZDB-GENE-030131-3544 [details] [associations]
symbol:gtf2b "general transcription factor IIB"
species:7955 "Danio rerio" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 ZFIN:ZDB-GENE-030131-3544 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914
HSSP:Q00403 EMBL:BC055569 IPI:IPI00501186 RefSeq:NP_955991.1
UniGene:Dr.78599 ProteinModelPortal:Q7SX98 SMR:Q7SX98 STRING:Q7SX98
GeneID:324823 KEGG:dre:324823 NextBio:20808979 ArrayExpress:Q7SX98
Uniprot:Q7SX98
Length = 316
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 113/238 (47%), Positives = 148/238 (62%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L G L+T+I+K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LNGGDLTTMISKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNLG+ + E D+
Sbjct: 193 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDL 244
>UNIPROTKB|F2Z4J6 [details] [associations]
symbol:LOC786656 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
OMA:WRAFDPD InterPro:IPR023486 IPI:IPI00697087 UniGene:Bt.39806
GeneTree:ENSGT00390000006671 EMBL:DAAA02007976
ProteinModelPortal:F2Z4J6 SMR:F2Z4J6 PRIDE:F2Z4J6
Ensembl:ENSBTAT00000044137 Uniprot:F2Z4J6
Length = 316
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/238 (47%), Positives = 146/238 (61%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNL + + E D+
Sbjct: 193 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|Q2KIN8 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 EMBL:BC112570
IPI:IPI00697087 RefSeq:NP_001039607.1 UniGene:Bt.39806
ProteinModelPortal:Q2KIN8 SMR:Q2KIN8 STRING:Q2KIN8 PRIDE:Q2KIN8
GeneID:513231 KEGG:bta:513231 CTD:2959 HOVERGEN:HBG017914
InParanoid:Q2KIN8 OrthoDB:EOG4QRH4F NextBio:20870763 Uniprot:Q2KIN8
Length = 316
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/238 (47%), Positives = 146/238 (61%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNL + + E D+
Sbjct: 193 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|E2RPG1 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 OMA:WRAFDPD InterPro:IPR023486 CTD:2959
GeneTree:ENSGT00390000006671 EMBL:AAEX03004837 RefSeq:XP_537085.1
ProteinModelPortal:E2RPG1 SMR:E2RPG1 PRIDE:E2RPG1
Ensembl:ENSCAFT00000032192 GeneID:479960 KEGG:cfa:479960
NextBio:20855065 Uniprot:E2RPG1
Length = 316
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/238 (47%), Positives = 146/238 (61%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNL + + E D+
Sbjct: 193 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|Q00403 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046966 "thyroid hormone receptor
binding" evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 Reactome:REACT_116125 GO:GO:0019048
GO:GO:0005654 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006368 GO:GO:0006367
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
Reactome:REACT_1788 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AL445991 PDB:1VOL PDBsum:1VOL PDB:1C9B
PDBsum:1C9B HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
EMBL:X59268 EMBL:M76766 EMBL:AK289822 EMBL:AB451296 EMBL:BC020597
EMBL:S44184 IPI:IPI00022820 PIR:S17654 RefSeq:NP_001505.1
UniGene:Hs.481852 PDB:1DL6 PDB:1RLY PDB:1RO4 PDB:1TFB PDB:2PHG
PDBsum:1DL6 PDBsum:1RLY PDBsum:1RO4 PDBsum:1TFB PDBsum:2PHG
ProteinModelPortal:Q00403 SMR:Q00403 DIP:DIP-1077N IntAct:Q00403
MINT:MINT-156550 STRING:Q00403 PhosphoSite:Q00403 DMDM:135629
PaxDb:Q00403 PeptideAtlas:Q00403 PRIDE:Q00403 DNASU:2959
Ensembl:ENST00000370500 GeneID:2959 KEGG:hsa:2959 UCSC:uc001dmo.4
GeneCards:GC01M089318 HGNC:HGNC:4648 MIM:189963 neXtProt:NX_Q00403
PharmGKB:PA29035 InParanoid:Q00403 PhylomeDB:Q00403 ChiTaRS:GTF2B
EvolutionaryTrace:Q00403 GenomeRNAi:2959 NextBio:11730
PMAP-CutDB:Q00403 ArrayExpress:Q00403 Bgee:Q00403 CleanEx:HS_GTF2B
Genevestigator:Q00403 GermOnline:ENSG00000137947 Uniprot:Q00403
Length = 316
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/238 (47%), Positives = 146/238 (61%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNL + + E D+
Sbjct: 193 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|F2Z5J6 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:CU179630 EMBL:CU151869 Ensembl:ENSSSCT00000007587
Uniprot:F2Z5J6
Length = 316
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/238 (47%), Positives = 146/238 (61%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNL + + E D+
Sbjct: 193 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>MGI|MGI:2385191 [details] [associations]
symbol:Gtf2b "general transcription factor IIB"
species:10090 "Mus musculus" [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046966 "thyroid hormone
receptor binding" evidence=ISO] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 MGI:MGI:2385191 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0001047 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F EMBL:BC016637
IPI:IPI00153874 RefSeq:NP_663521.1 UniGene:Mm.271756
ProteinModelPortal:P62915 SMR:P62915 STRING:P62915
PhosphoSite:P62915 PaxDb:P62915 PRIDE:P62915
Ensembl:ENSMUST00000029938 GeneID:229906 KEGG:mmu:229906
InParanoid:P62915 NextBio:379735 Bgee:P62915 CleanEx:MM_GTF2B
Genevestigator:P62915 GermOnline:ENSMUSG00000028271 Uniprot:P62915
Length = 316
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/238 (47%), Positives = 146/238 (61%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNL + + E D+
Sbjct: 193 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>RGD|619735 [details] [associations]
symbol:Gtf2b "general transcription factor IIB" species:10116
"Rattus norvegicus" [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA;ISO] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:619735 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
GeneTree:ENSGT00390000006671 EMBL:X65948 EMBL:BC085345
IPI:IPI00200556 PIR:S26299 RefSeq:NP_112303.1 UniGene:Rn.6109
ProteinModelPortal:P62916 SMR:P62916 IntAct:P62916 STRING:P62916
PRIDE:P62916 Ensembl:ENSRNOT00000015032 GeneID:81673 KEGG:rno:81673
InParanoid:P62916 NextBio:615268 Genevestigator:P62916
Uniprot:P62916
Length = 316
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 112/238 (47%), Positives = 146/238 (61%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNL + + E D+
Sbjct: 193 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>UNIPROTKB|B1APE2 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643006
SMR:B1APE2 STRING:B1APE2 Ensembl:ENST00000418217 Uniprot:B1APE2
Length = 231
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 108/216 (50%), Positives = 138/216 (63%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C EC V ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECDRV-----IDVGSEWRTFSNDKATKDPSRVGDSQNPL 69
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 70 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 128
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 129 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 187
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 220
R + I+K LET SV++ I GDFM RFCSNL
Sbjct: 188 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 217
>UNIPROTKB|B1APE1 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643469
SMR:B1APE1 STRING:B1APE1 Ensembl:ENST00000448623 Uniprot:B1APE1
Length = 224
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 105/211 (49%), Positives = 136/211 (64%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 14 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVAT 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 74 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215
R + I+K LET SV++ I GDFM R
Sbjct: 192 RCFKLILK--ALET--SVDL--ITTGDFMSR 216
>TAIR|locus:2093852 [details] [associations]
symbol:pBRP2 "plant-specific TFIIB-related protein 2"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046686 "response to cadmium ion" evidence=IEP]
[GO:0000769 "syncytium formation by mitosis without cytokinesis"
evidence=IMP] [GO:0009960 "endosperm development" evidence=IMP]
[GO:0010440 "stomatal lineage progression" evidence=RCA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0046686 EMBL:CP002686 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 GO:GO:0009960 GO:GO:0003743
EMBL:AP001309 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
IPI:IPI00533744 RefSeq:NP_189584.1 UniGene:At.36925
ProteinModelPortal:Q9LIA6 SMR:Q9LIA6 STRING:Q9LIA6
EnsemblPlants:AT3G29380.1 GeneID:822598 KEGG:ath:AT3G29380
TAIR:At3g29380 InParanoid:Q9LIA6 OMA:NSRACEI PhylomeDB:Q9LIA6
ProtClustDB:CLSN2913417 ArrayExpress:Q9LIA6 Genevestigator:Q9LIA6
GO:GO:0000769 Uniprot:Q9LIA6
Length = 336
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 108/256 (42%), Positives = 146/256 (57%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVR 58
M + C DCK+ T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLIL-AFKTIA 113
VG TNP L G L T+I KP + LS S+L R N+ N + LI AF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
M+D L L I RA EI K + + K RG+ +A+ AA + ACR+ RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQ---SVEMGTIHAGDFMRRFCSNLGMNNXXX 227
I VANG KK+I R + ++K++ LE+ Q S I+ G+ +RRFCS L ++
Sbjct: 181 IAEVANGVDKKDI-RKESLVIKRV-LESHQTSVSASQAIINTGELVRRFCSKLDISQREI 238
Query: 228 XXXXXXXXXSEEFDIR 243
+E FDIR
Sbjct: 239 MAIPEAVEKAENFDIR 254
>WB|WBGene00006648 [details] [associations]
symbol:ttb-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 EMBL:FO081767 RefSeq:NP_503146.1
ProteinModelPortal:O16991 SMR:O16991 STRING:O16991 PaxDb:O16991
EnsemblMetazoa:W03F9.5.1 EnsemblMetazoa:W03F9.5.2
EnsemblMetazoa:W03F9.5.3 GeneID:178544 KEGG:cel:CELE_W03F9.5
UCSC:W03F9.5.1 CTD:178544 WormBase:W03F9.5
GeneTree:ENSGT00390000006671 InParanoid:O16991 NextBio:901568
Uniprot:O16991
Length = 306
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 103/237 (43%), Positives = 138/237 (58%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
+D A+ I+K V + K+ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR
Sbjct: 125 QDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI 242
+ IV+ L ET ++E I + DFM RFC NL + N + + D+
Sbjct: 184 CFKIIVRSL--ET--NLEQ--ITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDL 234
>DICTYBASE|DDB_G0290929 [details] [associations]
symbol:gtf2b "transcription initiation factor IIB"
species:44689 "Dictyostelium discoideum" [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
dictyBase:DDB_G0290929 GO:GO:0005654 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GenomeReviews:CM000154_GR Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AAFI02000172 GO:GO:0001139
KO:K03124 InterPro:IPR023486 RefSeq:XP_635486.1 HSSP:Q00403
ProteinModelPortal:Q54FD6 SMR:Q54FD6 STRING:Q54FD6
EnsemblProtists:DDB0216283 GeneID:8627902 KEGG:ddi:DDB_G0290929
OMA:VTIRNAY Uniprot:Q54FD6
Length = 325
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 101/225 (44%), Positives = 142/225 (63%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
+C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMN 136
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT KEI ++ N K
Sbjct: 137 LPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPK 195
Query: 181 KEIGRAKEYIVKQLGLETGQSV-EMGTIHAGDFMRRFCSNLGMNN 224
KEI R + I+K ET SV + TI + DF RFCS L + N
Sbjct: 196 KEISRCYK-IMK----ETFASVLNLQTISSEDFTSRFCSTLKLPN 235
>POMBASE|SPAC16E8.16 [details] [associations]
symbol:SPAC16E8.16 "transcription factor TFIIB"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IDA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPAC16E8.16 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 PIR:T37796
RefSeq:NP_594229.1 ProteinModelPortal:O13749 SMR:O13749
STRING:O13749 EnsemblFungi:SPAC16E8.16.1 GeneID:2542339
KEGG:spo:SPAC16E8.16 OMA:VLRWRKW OrthoDB:EOG4RZ27R NextBio:20803400
Uniprot:O13749
Length = 340
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 92/229 (40%), Positives = 132/229 (57%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVA 79
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGLV 122
NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D + L
Sbjct: 80 NPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISLP 135
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I D A ++YK+V+D K+ +G++ +++AAC+YIACRQ PRT EIC++ N KKE
Sbjct: 136 KVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPKKE 194
Query: 183 IGRAKEYIVKQL-----------GLETGQSVEMGTIHAGDFMRRFCSNL 220
IGR + + + L L+ + ++ + A D M RFC+ L
Sbjct: 195 IGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRL 243
>CGD|CAL0001439 [details] [associations]
symbol:SUA71 species:5476 "Candida albicans" [GO:0001139
"core RNA polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0001129 "TBP-class protein binding RNA polymerase II
transcription factor activity involved in preinitiation complex
assembly" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:2000679 "positive regulation of transcription regulatory region
DNA binding" evidence=IEA] [GO:0001174 "transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0051123
"RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0001113 "transcriptional open complex formation
at RNA polymerase II promoter" evidence=IEA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0001439 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 KO:K03124
InterPro:IPR023486 RefSeq:XP_721286.1 RefSeq:XP_721557.1
ProteinModelPortal:Q5AHZ3 STRING:Q5AHZ3 GeneID:3636879
GeneID:3637101 KEGG:cal:CaO19.10577 KEGG:cal:CaO19.3059
Uniprot:Q5AHZ3
Length = 344
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 87/234 (37%), Positives = 128/234 (54%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 82 GNPLLDTEDLSTMISYAPDSTKA---GRELSRAQSKSLVDKKDNALAAAYIKISQMCDGY 138
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L + D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ KEI ++ N
Sbjct: 139 QLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VP 197
Query: 180 KKEIGRA---KEYIVKQLGLET------GQ-SVEMGTIHAGDFMRRFCSNLGMN 223
+KEIG+ + I+++ GQ S++ A D +RRFCS+LG+N
Sbjct: 198 RKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVN 251
>ASPGD|ASPL0000072123 [details] [associations]
symbol:AN4928 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:BN001303 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:AACD01000084 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:VLRWRKW OrthoDB:EOG4RZ27R RefSeq:XP_662532.1
ProteinModelPortal:Q5B3F2 STRING:Q5B3F2
EnsemblFungi:CADANIAT00005470 GeneID:2872725 KEGG:ani:AN4928.2
Uniprot:Q5B3F2
Length = 351
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 79/201 (39%), Positives = 116/201 (57%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG TN
Sbjct: 26 CPECKEMPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 85
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGLV 122
PLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D G+
Sbjct: 86 PLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSDKANKSLLAAYKEIGALCDGFGIP 141
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+ D A ++K V+D K+ +G++QD ++A C++IACR+ PRT EI +V ++KE
Sbjct: 142 KNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRTFTEIFAVTK-VSRKE 200
Query: 183 IGRAKEYIVKQLGLETGQSVE 203
IGR + + K T Q++E
Sbjct: 201 IGRIYKALEKFF---TSQNLE 218
>CGD|CAL0005818 [details] [associations]
symbol:SUA72 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 81/232 (34%), Positives = 127/232 (54%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK+ +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG +
Sbjct: 22 CPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
N L L+T+I+ PN SG +SL + Q + + L A++ I+ + +
Sbjct: 82 NSLYDTEDLTTMISYAPNSNSGSS-KNSLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A +YK V + + +G+ QD+++AA + + CR+ D PRT++EI ++ N TK
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRALTNVPTK 200
Query: 181 ---KEIGRAKEYIVKQLGLETGQ-SV--EMG--TIH-AGDFMRRFCSNLGMN 223
K G K+ I L + S+ E T H A D +RRFCS+LG++
Sbjct: 201 QIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGLS 252
>UNIPROTKB|Q59K82 [details] [associations]
symbol:SUA72 "Likely transcription factor TFIIB"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 81/232 (34%), Positives = 127/232 (54%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK+ +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG +
Sbjct: 22 CPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
N L L+T+I+ PN SG +SL + Q + + L A++ I+ + +
Sbjct: 82 NSLYDTEDLTTMISYAPNSNSGSS-KNSLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A +YK V + + +G+ QD+++AA + + CR+ D PRT++EI ++ N TK
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRALTNVPTK 200
Query: 181 ---KEIGRAKEYIVKQLGLETGQ-SV--EMG--TIH-AGDFMRRFCSNLGMN 223
K G K+ I L + S+ E T H A D +RRFCS+LG++
Sbjct: 201 QIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGLS 252
>SGD|S000006290 [details] [associations]
symbol:SUA7 "Transcription factor TFIIB" species:4932
"Saccharomyces cerevisiae" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0001129
"TBP-class protein binding RNA polymerase II transcription factor
activity involved in preinitiation complex assembly"
evidence=IMP;IDA] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=IMP;IDA] [GO:0017025
"TBP-class protein binding" evidence=IEA;IDA;IPI] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA;IPI] [GO:2000679 "positive regulation of transcription
regulatory region DNA binding" evidence=IDA] [GO:0001174
"transcriptional start site selection at RNA polymerase II
promoter" evidence=IMP] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
SGD:S000006290 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:BK006949 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:U51033 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0017025 GO:GO:0000993 GO:GO:2000679
GO:GO:0001139 GO:GO:0001129 GO:GO:0001113 PDB:3K1F PDB:3K7A
PDB:4BBR PDB:4BBS PDBsum:3K1F PDBsum:3K7A PDBsum:4BBR PDBsum:4BBS
GO:GO:0001174 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:SNDDQNG GeneTree:ENSGT00390000006671 OrthoDB:EOG4RZ27R
EMBL:M81380 EMBL:AY693232 PIR:S26707 RefSeq:NP_015411.1
ProteinModelPortal:P29055 SMR:P29055 DIP:DIP-701N IntAct:P29055
MINT:MINT-473341 STRING:P29055 PaxDb:P29055 PeptideAtlas:P29055
EnsemblFungi:YPR086W GeneID:856201 KEGG:sce:YPR086W CYGD:YPR086w
EvolutionaryTrace:P29055 NextBio:981402 Genevestigator:P29055
GermOnline:YPR086W Uniprot:P29055
Length = 345
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 82/229 (35%), Positives = 124/229 (54%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAE 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + TK
Sbjct: 142 LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTK 201
Query: 181 KEIGRAKEYIVKQL--GLETGQSVEMGTIH-AG----DFMRRFCSNLGM 222
E G+ I+K + G +++ T + +G ++ RFCS+LG+
Sbjct: 202 -EFGKTLN-IMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL 248
>TAIR|locus:2139227 [details] [associations]
symbol:AT4G10680 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0003743
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 EMBL:AL049523 EMBL:AF080119
EMBL:AL161518 KO:K03124 HSSP:P61999 EMBL:AY463604 IPI:IPI00527305
PIR:T01909 RefSeq:NP_192806.1 UniGene:At.33613
ProteinModelPortal:O82494 SMR:O82494 STRING:O82494
EnsemblPlants:AT4G10680.1 GeneID:826661 KEGG:ath:AT4G10680
TAIR:At4g10680 InParanoid:O82494 PhylomeDB:O82494
Genevestigator:O82494 Uniprot:O82494
Length = 182
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 76/197 (38%), Positives = 107/197 (54%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +CK+ TE V ++ GDT+C ECG V+E++ ID D D G
Sbjct: 4 DGICLECKRPTETVVNYKNGDTICIECGHVIENNIID-------------DLD----GAS 46
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLI-LAFKTIATMSDRL 119
TNP L G L T+I K +G S L+S L R QN + + +I +A+ I M++ L
Sbjct: 47 TNPNLKSGHLPTIIFKLSGKSSS-LASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEAL 105
Query: 120 GLVATIKDRANEIYKKVEDQKSSRG-RNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
GL I + A +I K+ D+K+ RG ++ L AA + ACRQ + P+T+KEI +VAN
Sbjct: 106 GLTFGISNTACKILSKL-DKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVAN-V 163
Query: 179 TKKEIGRAKEYIVKQLG 195
KEI +A VK LG
Sbjct: 164 DMKEINKA----VKLLG 176
>GENEDB_PFALCIPARUM|PFA0525w [details] [associations]
symbol:PFA0525w "transcription initiation factor
TFIIB, putative" species:5833 "Plasmodium falciparum" [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0003743
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL844501 KO:K03124 HSSP:Q00403
RefSeq:XP_001351037.1 ProteinModelPortal:Q8I237 PRIDE:Q8I237
EnsemblProtists:PFA0525w:mRNA GeneID:813242 KEGG:pfa:PFA_0525w
HOGENOM:HOG000283789 OMA:YNENISH ProtClustDB:CLSZ2432986
Uniprot:Q8I237
Length = 367
Score = 223 (83.6 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 57/191 (29%), Positives = 97/191 (50%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGPT 63
C DCK+ ++ D S G +C+ CG+V+ES + E EWR F N+ S + D RVG +
Sbjct: 50 CPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVS 109
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
+ L + ST K S + L L N D+ LI AF + + D L +
Sbjct: 110 DIWLENNLTSTTFIK----SSKKLQH-LNMMTQINKN-DQTLISAFNILKLICDTFFLRS 163
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+ +RA EI K+++D + + R + + A +Y+ACR+ +++KE+ + +K++
Sbjct: 164 NVIERAKEITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIKELITFDRSYKEKDL 223
Query: 184 GRAKEYIVKQL 194
G+ + K L
Sbjct: 224 GKTINKLKKVL 234
>UNIPROTKB|Q8I237 [details] [associations]
symbol:PFA_0525w "Transcription initiation factor TFIIB,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0003743
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL844501 KO:K03124 HSSP:Q00403
RefSeq:XP_001351037.1 ProteinModelPortal:Q8I237 PRIDE:Q8I237
EnsemblProtists:PFA0525w:mRNA GeneID:813242 KEGG:pfa:PFA_0525w
HOGENOM:HOG000283789 OMA:YNENISH ProtClustDB:CLSZ2432986
Uniprot:Q8I237
Length = 367
Score = 223 (83.6 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 57/191 (29%), Positives = 97/191 (50%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGPT 63
C DCK+ ++ D S G +C+ CG+V+ES + E EWR F N+ S + D RVG +
Sbjct: 50 CPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVS 109
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
+ L + ST K S + L L N D+ LI AF + + D L +
Sbjct: 110 DIWLENNLTSTTFIK----SSKKLQH-LNMMTQINKN-DQTLISAFNILKLICDTFFLRS 163
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+ +RA EI K+++D + + R + + A +Y+ACR+ +++KE+ + +K++
Sbjct: 164 NVIERAKEITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIKELITFDRSYKEKDL 223
Query: 184 GRAKEYIVKQL 194
G+ + K L
Sbjct: 224 GKTINKLKKVL 234
>TAIR|locus:2082583 [details] [associations]
symbol:AT3G57370 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010440 "stomatal lineage progression"
evidence=RCA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
EMBL:CP002686 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:AL137080 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
EMBL:AY463602 IPI:IPI00522698 PIR:T45815 RefSeq:NP_191296.1
UniGene:At.34838 ProteinModelPortal:Q9M2L0 SMR:Q9M2L0 STRING:Q9M2L0
PRIDE:Q9M2L0 EnsemblPlants:AT3G57370.1 GeneID:824904
KEGG:ath:AT3G57370 TAIR:At3g57370 InParanoid:Q9M2L0
PhylomeDB:Q9M2L0 ArrayExpress:Q9M2L0 Genevestigator:Q9M2L0
Uniprot:Q9M2L0
Length = 360
Score = 210 (79.0 bits), Expect = 9.3e-17, P = 9.3e-17
Identities = 60/166 (36%), Positives = 89/166 (53%)
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTI 112
+ G +N L+ G S +S EFL S LG Q +P L+ +I
Sbjct: 106 MNGSSNDFLSLG-TSQNSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSI 164
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
+S+ L L ATIK +ANEI+K VE +RG+ ++ L AAC+YIACR D RT++EI
Sbjct: 165 EAISNGLKLPATIKGQANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMREIS 222
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCS 218
AN A+ +I +I ++L E ++ M +I +F++RFCS
Sbjct: 223 RFANKASISDISETVGFIAEKL--EINKNWYM-SIETANFIKRFCS 265
>TAIR|locus:2157270 [details] [associations]
symbol:AT5G39230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
Pfam:PF08271 PROSITE:PS51134 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
PANTHER:PTHR11618 EMBL:AB010694 IPI:IPI00525422 RefSeq:NP_198739.1
UniGene:At.55246 ProteinModelPortal:Q3E7U7 SMR:Q3E7U7
EnsemblPlants:AT5G39230.1 GeneID:833919 KEGG:ath:AT5G39230
TAIR:At5g39230 eggNOG:NOG241571 HOGENOM:HOG000131620 OMA:TICTECG
PhylomeDB:Q3E7U7 ProtClustDB:CLSN2916747 Genevestigator:Q3E7U7
Uniprot:Q3E7U7
Length = 119
Score = 128 (50.1 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI 38
C DCKK T+ V D+ +GDT+C+ECGL+L+SH I
Sbjct: 6 CLDCKKRTDTVIDYRSGDTICTECGLILDSHYI 38
>TAIR|locus:2115255 [details] [associations]
symbol:PBRP "plant-specific TFIIB-related protein"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009527 "plastid outer membrane" evidence=IDA]
[GO:0000182 "rDNA binding" evidence=IDA] [GO:0010440 "stomatal
lineage progression" evidence=RCA] InterPro:IPR000812
InterPro:IPR013150 Pfam:PF00382 PRINTS:PR00685 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
GO:GO:0003743 EMBL:AL161589 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 EMBL:Z99708 PANTHER:PTHR11618
GO:GO:0000182 GO:GO:0009527 KO:K03124 HSSP:Q00403 EMBL:BT006470
EMBL:AY463603 EMBL:AJ295068 IPI:IPI00543098 PIR:G85432
RefSeq:NP_195383.1 UniGene:At.48945 ProteinModelPortal:O23215
SMR:O23215 STRING:O23215 PRIDE:O23215 EnsemblPlants:AT4G36650.1
GeneID:829817 KEGG:ath:AT4G36650 TAIR:At4g36650
HOGENOM:HOG000114088 InParanoid:O23215 OMA:RDCCSAT PhylomeDB:O23215
ProtClustDB:CLSN2685566 Genevestigator:O23215 Uniprot:O23215
Length = 503
Score = 136 (52.9 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 41/118 (34%), Positives = 63/118 (53%)
Query: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
A+ I ++ LGL I + A ++++ R R+ +AL ACL A R+ +PRT
Sbjct: 133 AYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEPRT 192
Query: 168 VKEICSVANGATKKEIGRAKEYIVKQLG--LETGQSVEMGTIHAGDFMRRFCSNLGMN 223
++EI S+A +KEIG+ YI K LG L+ Q + +I M RFC+ L +N
Sbjct: 193 LQEI-SIAANVQQKEIGK---YI-KILGEALQLSQPINSNSISV--HMPRFCTLLQLN 243
Score = 40 (19.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 24 TVCSECGLVLE 34
T CS CG V+E
Sbjct: 23 TECSSCGRVME 33
>WB|WBGene00000271 [details] [associations]
symbol:brf-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006898 GO:GO:0040007
GO:GO:0045893 GO:GO:0002119 GO:GO:0008270 GO:GO:0000003
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 EMBL:FO080734
KO:K15196 GeneTree:ENSGT00390000010349 PIR:T16368
RefSeq:NP_495526.1 ProteinModelPortal:Q20429 SMR:Q20429
STRING:Q20429 PaxDb:Q20429 EnsemblMetazoa:F45E12.2.1
EnsemblMetazoa:F45E12.2.2 GeneID:174199 KEGG:cel:CELE_F45E12.2
UCSC:F45E12.2 CTD:174199 WormBase:F45E12.2 InParanoid:Q20429
OMA:CRLENTA NextBio:882969 Uniprot:Q20429
Length = 759
Score = 108 (43.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 30/116 (25%), Positives = 54/116 (46%)
Query: 84 GEFLSS---SLGRWQNRGSNPDRGLILAF--KTIATMSDRLGLVATIKDRANEIYKKVED 138
G+F+SS + + GS R + A K I + +L + + + A YK
Sbjct: 55 GQFVSSERAAANNFNGMGSQESREMTYAKGRKVIDELGSQLRINSHCMNTAFNFYKMCVS 114
Query: 139 QKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 194
+ +RGRN+ +++A C+YI CR E+ + + V ++GR Y+ + L
Sbjct: 115 RNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQ-INVFDLGRNLNYLSRSL 169
Score = 75 (31.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG 52
CS+C +E+ D + GD C+ CG VLE + ++++ A SG
Sbjct: 5 CSNCGS-SEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSG 50
>MGI|MGI:1919558 [details] [associations]
symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
transcription initiation factor IIIB (S. cerevisiae)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 MGI:MGI:1919558 GO:GO:0005634 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 HOVERGEN:HBG023540
OrthoDB:EOG4NGGMJ EMBL:BC037224 IPI:IPI00319141 UniGene:Mm.196721
ProteinModelPortal:Q8CFK2 SMR:Q8CFK2 STRING:Q8CFK2
PhosphoSite:Q8CFK2 PRIDE:Q8CFK2 UCSC:uc007pfn.1
HOGENOM:HOG000198688 InParanoid:Q8CFK2 Genevestigator:Q8CFK2
GermOnline:ENSMUSG00000011158 Uniprot:Q8CFK2
Length = 676
Score = 82 (33.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV 57
MT C C T++ D + GD VC+ CG VLE + I SE + N G + V
Sbjct: 1 MTGRVCRGCGG-TDIELDAARGDAVCTGCGSVLEDNII--VSEVQFVENSGGGSSAV 54
Score = 80 (33.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
D A +K + +RGR ++AACLY+ CR E P + ++
Sbjct: 108 DTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDL 152
>UNIPROTKB|Q92994 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000126 "transcription factor TFIIIB complex"
evidence=NAS] [GO:0006384 "transcription initiation from RNA
polymerase III promoter" evidence=TAS] [GO:0009303 "rRNA
transcription" evidence=TAS] [GO:0009304 "tRNA transcription"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893
EMBL:CH471061 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0009303 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 Reactome:REACT_1788 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL512355 GO:GO:0006384
GO:GO:0000126 KO:K15196 EMBL:U28838 EMBL:U75276 EMBL:AJ297406
EMBL:AJ297407 EMBL:AJ297408 EMBL:AK096471 EMBL:AK294899
EMBL:AK295579 EMBL:BC016743 EMBL:BC071637 EMBL:BC086856
EMBL:BC103859 IPI:IPI00016859 IPI:IPI00157643 IPI:IPI00216075
IPI:IPI00334140 IPI:IPI00607889 IPI:IPI01011010 IPI:IPI01012378
PIR:I39065 RefSeq:NP_001229715.1 RefSeq:NP_001229716.1
RefSeq:NP_001229717.1 RefSeq:NP_001229718.1 RefSeq:NP_001229719.1
RefSeq:NP_001510.2 RefSeq:NP_663718.1 UniGene:Hs.424484
ProteinModelPortal:Q92994 SMR:Q92994 IntAct:Q92994
MINT:MINT-2859415 STRING:Q92994 PhosphoSite:Q92994 DMDM:20455319
PaxDb:Q92994 PRIDE:Q92994 Ensembl:ENST00000327359
Ensembl:ENST00000379937 Ensembl:ENST00000392557
Ensembl:ENST00000440513 Ensembl:ENST00000446501
Ensembl:ENST00000546474 Ensembl:ENST00000548421 GeneID:2972
KEGG:hsa:2972 UCSC:uc001yql.2 UCSC:uc010axg.1 CTD:2972
GeneCards:GC14M105675 HGNC:HGNC:11551 MIM:604902 neXtProt:NX_Q92994
PharmGKB:PA164741296 HOVERGEN:HBG023540 InParanoid:Q92994
OMA:YGCDGDE OrthoDB:EOG4NGGMJ PhylomeDB:Q92994 ChiTaRS:BRF1
GenomeRNAi:2972 NextBio:11787 ArrayExpress:Q92994 Bgee:Q92994
CleanEx:HS_BRF1 Genevestigator:Q92994 GermOnline:ENSG00000185024
GO:GO:0009304 Uniprot:Q92994
Length = 677
Score = 81 (33.6 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ ++L L D A +K + +RGR ++AACLY+ CR E P + ++
Sbjct: 96 LGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDL 152
Score = 79 (32.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG 52
MT C C T++ D + GD VC+ CG VLE + I SE + F SG
Sbjct: 1 MTGRVCRGCGG-TDIELDAARGDAVCTACGSVLEDNII--VSEVQ-FVESSG 48
>FB|FBgn0038499 [details] [associations]
symbol:Brf "Brf" species:7227 "Drosophila melanogaster"
[GO:0006359 "regulation of transcription from RNA polymerase III
promoter" evidence=ISS;IDA;IPI] [GO:0000126 "transcription factor
TFIIIB complex" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IDA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=IPI] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0006383 GO:GO:0006359 eggNOG:COG1405
PANTHER:PTHR11618 EMBL:AF262374 HSSP:P61999
ProteinModelPortal:Q9NB72 SMR:Q9NB72 STRING:Q9NB72 PaxDb:Q9NB72
PRIDE:Q9NB72 FlyBase:FBgn0038499 InParanoid:Q9NB72
OrthoDB:EOG4SJ3VV ArrayExpress:Q9NB72 Bgee:Q9NB72 Uniprot:Q9NB72
Length = 662
Score = 90 (36.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 30/113 (26%), Positives = 48/113 (42%)
Query: 82 ASGEFLSSSLGRWQNRGSNPDRGLIL--AFKTIATMSDRLGLVATIKDRANEIYKKVEDQ 139
+SG + G++Q R + + A K I + +L L D A +K +
Sbjct: 62 SSGGATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALGR 121
Query: 140 KSSRGRNQDALLAACLYIACRQEDKPRT------VKEICSVANGATKKEIGRA 186
+RGR + AAC+Y+ CR E V++ICS G T ++ A
Sbjct: 122 HLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHA 174
Score = 68 (29.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI 38
C +C + E+ D++ GD VC CG VLE I
Sbjct: 7 CRNCGSN-EIEEDNARGDRVCMNCGSVLEDSLI 38
>MGI|MGI:1913903 [details] [associations]
symbol:Brf2 "BRF2, subunit of RNA polymerase III
transcription initiation factor, BRF1-like" species:10090 "Mus
musculus" [GO:0005575 "cellular_component" evidence=ND] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 Pfam:PF08271 PROSITE:PS51134
MGI:MGI:1913903 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SUPFAM:SSF47954 CTD:55290 eggNOG:COG1405
GeneTree:ENSGT00390000002288 HOGENOM:HOG000095260
HOVERGEN:HBG107537 KO:K15197 OrthoDB:EOG457574 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AK012680 EMBL:AK028228 EMBL:AK151198
EMBL:BC098232 IPI:IPI00112619 RefSeq:NP_079962.1 UniGene:Mm.334467
ProteinModelPortal:Q3UAW9 SMR:Q3UAW9 STRING:Q3UAW9
PhosphoSite:Q3UAW9 PRIDE:Q3UAW9 Ensembl:ENSMUST00000033877
GeneID:66653 KEGG:mmu:66653 UCSC:uc009lhy.1 InParanoid:Q3UAW9
NextBio:322281 Bgee:Q3UAW9 Genevestigator:Q3UAW9 Uniprot:Q3UAW9
Length = 420
Score = 87 (35.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 27/104 (25%), Positives = 52/104 (50%)
Query: 119 LGLVATIKDRANEIYKK---VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 175
L L T +D A Y+K + +++R + ++ L+ C+ I CRQ + P T+ IC++
Sbjct: 83 LKLPLTFEDTAISYYQKAYQLSGIRAARLQKKEVLVGCCVLITCRQHNWPLTMGTICTLL 142
Query: 176 NGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSN 219
G + +VK LGL+ + ++ D ++ +CS+
Sbjct: 143 YADLDLFSGTYMQ-MVKLLGLD------VPSLCLADLVKSYCSS 179
Score = 66 (28.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 6 CSDCKKHTEVVFD--HSAGDTVCSECGLVLESHSIDET----SEWR--TFANESGDNDPV 57
C DC +E+V D +S VCS+CG V+ + T +R T++ +G+N+ V
Sbjct: 7 CPDCGS-SELVEDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNFREVTYSRSTGENEQV 65
>UNIPROTKB|F1NQ85 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AADN02003843 EMBL:AADN02003838
EMBL:AADN02003839 EMBL:AADN02003840 EMBL:AADN02003841
EMBL:AADN02003842 IPI:IPI00588765 Ensembl:ENSGALT00000019132
Uniprot:F1NQ85
Length = 593
Score = 83 (34.3 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ I + ++L L D A +K + +RGR ++AACLY+ CR E P +
Sbjct: 89 RQIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 148
Query: 170 EI 171
++
Sbjct: 149 DL 150
Score = 73 (30.8 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV 57
C+ C +E+ D + GD VC+ CG VLE + I SE + N G + V
Sbjct: 4 CAACGC-SEIEVDAARGDAVCTGCGSVLEDNII--VSEVQFVENSGGGSSAV 52
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 245 233 0.00086 113 3 11 22 0.45 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 597 (63 KB)
Total size of DFA: 189 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.86u 0.09s 20.95t Elapsed: 00:00:01
Total cpu time: 20.87u 0.10s 20.97t Elapsed: 00:00:01
Start: Sat May 11 11:06:35 2013 End: Sat May 11 11:06:36 2013