BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025983
(245 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|317106705|dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas]
Length = 312
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 240/245 (97%), Positives = 242/245 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQA+KAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|255588003|ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223525233|gb|EEF27913.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust.
Identities = 239/245 (97%), Positives = 242/245 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DA+CSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQA+KAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAMKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|449465789|ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
gi|449529834|ref|XP_004171903.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
Length = 312
Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/245 (97%), Positives = 242/245 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|297829558|ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
gi|297328501|gb|EFH58920.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/245 (94%), Positives = 242/245 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM NQ VKAAQE+VQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|15228267|ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName:
Full=General transcription factor TFIIB-2;
Short=AtTFIIB2
gi|6056193|gb|AAF02810.1|AC009400_6 transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|16974427|gb|AAL31139.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
gi|332641371|gb|AEE74892.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
Length = 312
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/245 (94%), Positives = 241/245 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM NQ VKAAQE+VQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|224138070|ref|XP_002322722.1| predicted protein [Populus trichocarpa]
gi|222867352|gb|EEF04483.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/245 (95%), Positives = 237/245 (96%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLI AFKTIATMSDRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLITAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM+N VKAA EAV+ SE+F
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMSNHTVKAATEAVKTSEQF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|225441886|ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|297739630|emb|CBI29812.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/245 (94%), Positives = 236/245 (96%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFC+DCKK+TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNG SG+FLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVEDQKS+RGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQL E GQSVEMGTIHAGDFMRRFCSNLGM NQ VKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|225464249|ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|296088031|emb|CBI35314.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/245 (94%), Positives = 236/245 (96%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFC+DCKK+TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNG SG+FLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVEDQKS+RGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQL E GQSVEMGTIHAGDFMRRFCSNLGM NQ VKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|224090077|ref|XP_002308933.1| predicted protein [Populus trichocarpa]
gi|222854909|gb|EEE92456.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/245 (93%), Positives = 235/245 (95%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCKKHTEVV DHSAGDTVCSECGLVLESHSIDETSEWR FANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKKHTEVVCDHSAGDTVCSECGLVLESHSIDETSEWRIFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGASG+FLS+SLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGASGDFLSTSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLE GQSVEMGTIHAGDFMRRFCSNLGM+N VKAA EAV+ SE+F
Sbjct: 181 KEIGRAKEYIVKQLGLEAGQSVEMGTIHAGDFMRRFCSNLGMSNHTVKAATEAVKTSEQF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|357509669|ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355500138|gb|AES81341.1| Transcription initiation factor IIB [Medicago truncatula]
Length = 313
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/246 (92%), Positives = 238/246 (96%), Gaps = 1/246 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGD VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGASG+FLSSSLGRWQNRGSNPDRGLILAFKTI TM++RLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LV TIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS+ANGATK
Sbjct: 121 LVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATK 180
Query: 181 KEIGRAKEYIVKQLGLET-GQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KEIGRAKEYIVKQLGLE GQSVEMGTIHAGDFMRRFCSNLGMN+QAVKAAQE+VQKSEE
Sbjct: 181 KEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVQKSEE 240
Query: 240 FDIRYS 245
FDIR S
Sbjct: 241 FDIRRS 246
>gi|351724605|ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
gi|1351222|sp|P48513.1|TF2B_SOYBN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|945087|gb|AAB09756.1| transcription factor TFIIB [Glycine max]
Length = 313
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/246 (93%), Positives = 234/246 (95%), Gaps = 1/246 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
GP+NPLL DGGLSTVIAKPNG G EFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
GLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNNQAVKAAQEAVQKSEE
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEE 240
Query: 240 FDIRYS 245
FDIR S
Sbjct: 241 FDIRRS 246
>gi|1841399|emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/234 (94%), Positives = 230/234 (98%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG
Sbjct: 1 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 60
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
L+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLGLVATIKDRANE
Sbjct: 61 LTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIKDRANE 120
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
IYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV
Sbjct: 121 IYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 180
Query: 192 KQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRYS 245
KQLGLETGQ VEMGTIHAGDFMRRFCSNLGM NQ VKAAQE+VQKSEEFDIR S
Sbjct: 181 KQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRS 234
>gi|356500515|ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 314
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/247 (92%), Positives = 234/247 (94%), Gaps = 2/247 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASG--EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GP+NPLL DGGLSTVIAKPNG G EFLSSSLGRWQNRGSNPDR LI+AFKTIATMSDR
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDR 120
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
LGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA
Sbjct: 121 LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 180
Query: 179 TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
TKKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNNQAVKAAQEAV KSE
Sbjct: 181 TKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVHKSE 240
Query: 239 EFDIRYS 245
EFDIR S
Sbjct: 241 EFDIRRS 247
>gi|356504767|ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
Length = 306
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/245 (91%), Positives = 232/245 (94%), Gaps = 6/245 (2%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M++ FCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSETFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNG SGEFLSSS+GRWQNRG LI+AFKTIATMSDRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGGSGEFLSSSVGRWQNRG------LIVAFKTIATMSDRLG 114
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 115 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 174
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLE GQSVE+GTIHAGDFMRRFCSNLGM NQAVKAAQEAVQKSEEF
Sbjct: 175 KEIGRAKEYIVKQLGLEQGQSVEIGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEF 234
Query: 241 DIRYS 245
DIR S
Sbjct: 235 DIRRS 239
>gi|115480363|ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|125564497|gb|EAZ09877.1| hypothetical protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza sativa Japonica Group]
Length = 312
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/245 (88%), Positives = 231/245 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNNQAVKAAQEAVQ+SEE
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|255544920|ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223547429|gb|EEF48924.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/245 (89%), Positives = 231/245 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D +C DCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES DNDPVRVG
Sbjct: 1 MADTYCPDCKRPTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLLADGGLSTVI+KP GASG+FL+SSLGRWQNRGSNPDR LI AFKTIATMSDRLG
Sbjct: 61 GPSNPLLADGGLSTVISKPTGASGDFLTSSLGRWQNRGSNPDRSLIQAFKTIATMSDRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVEDQK RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQL +E GQS+EMGTIHAGDF+RRFCS+LGMNNQAVKAAQEAV+KSEE
Sbjct: 181 KEIGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQAVKAAQEAVKKSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|242045402|ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/245 (88%), Positives = 230/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKK TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNNQAVKAAQEAVQ+SEE
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|357159642|ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 312
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/245 (87%), Positives = 229/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAHGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN AVKAAQEAVQ+SEE
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|326531378|dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 312
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 213/245 (86%), Positives = 229/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D +C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAHGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN AVKAAQEAVQ+SEE
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|194695160|gb|ACF81664.1| unknown [Zea mays]
gi|414886465|tpg|DAA62479.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
gi|414886466|tpg|DAA62480.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 312
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/245 (86%), Positives = 229/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVKQL +E GQS+EMGTIHAG+F+RRFCS LGMNNQAV+AAQ+AV+ SEE
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGNFLRRFCSTLGMNNQAVRAAQDAVKHSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|226503255|ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
gi|195629762|gb|ACG36522.1| transcription initiation factor IIB [Zea mays]
gi|414590059|tpg|DAA40630.1| TPA: transcription initiation factor IIB [Zea mays]
Length = 312
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/245 (85%), Positives = 229/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEI+KK+ED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGM NQAV AA+EAVQ+SEE
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAVQRSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|414590060|tpg|DAA40631.1| TPA: hypothetical protein ZEAMMB73_839050 [Zea mays]
Length = 330
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/245 (85%), Positives = 229/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEI+KK+ED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGM NQAV AA+EAVQ+SEE
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAVQRSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|297827809|ref|XP_002881787.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
gi|297327626|gb|EFH58046.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/245 (85%), Positives = 230/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYK++EDQK++RGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANEIYKRLEDQKTTRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAK+YIVK LGL+ GQSVE+GTIHAGDFMRRFCSNLGM+N AVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKDYIVKTLGLDPGQSVELGTIHAGDFMRRFCSNLGMSNHAVKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|15227397|ref|NP_181694.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
gi|1351221|sp|P48512.1|TF2B1_ARATH RecName: Full=Transcription initiation factor IIB-1; AltName:
Full=General transcription factor TFIIB-1;
Short=AtTFIIB1
gi|945085|gb|AAB09755.1| transcription factor TFIIB [Arabidopsis thaliana]
gi|2618697|gb|AAB84344.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB [Arabidopsis thaliana]
gi|21554842|gb|AAM63705.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB [Arabidopsis thaliana]
gi|39545878|gb|AAR28002.1| TFIIB1 [Arabidopsis thaliana]
gi|330254915|gb|AEC10009.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
Length = 312
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/245 (85%), Positives = 229/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N AVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|225436547|ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
gi|297734946|emb|CBI17180.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/247 (85%), Positives = 227/247 (91%), Gaps = 2/247 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
MTD +C +CK++TEVV DHSAGDTVCSECGLVLE+HSIDE SEWRTFANES DNDPVRVG
Sbjct: 1 MTDTYCPECKRYTEVVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPN--GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GP+NPLLADGGLST+I+KP+ G S +FLSSSLGRWQNRGSNPDR LI AFKTIATM DR
Sbjct: 61 GPSNPLLADGGLSTLISKPSNGGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMCDR 120
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
LGLVATIKD ANEIYKKVEDQK RGRNQDA+LAAC+YIACRQEDKPRTVKEICSVANGA
Sbjct: 121 LGLVATIKDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGA 180
Query: 179 TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
TKKEIGRAKEYIVKQL +E GQS+EMGTIHAGDF+RRFCS+LGM NQAVKAAQEAVQKSE
Sbjct: 181 TKKEIGRAKEYIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQKSE 240
Query: 239 EFDIRYS 245
E DIR S
Sbjct: 241 ELDIRRS 247
>gi|148907440|gb|ABR16853.1| unknown [Picea sitchensis]
Length = 313
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/240 (87%), Positives = 225/240 (93%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCKK TEVVFDHSAGDTVC ECGLVLE+HSIDETSEWRTFANE+GDNDPVRVGGP+NP
Sbjct: 7 CPDCKKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNP 66
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
LL DGGLSTVI+KPNGASG+FLSSSLGRWQNRGSNPDR LI+AFKTI TMSDRLGLVATI
Sbjct: 67 LLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVATI 126
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
KDRANEIYKKVED KS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGA+KKE+GR
Sbjct: 127 KDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASKKEVGR 186
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRYS 245
AKE+IVKQL E G+S+EMGTIHAGDF+RRFCS+LGM +QAVKAA EAV+KSEE DIR S
Sbjct: 187 AKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQAVKAATEAVKKSEELDIRRS 246
>gi|356570450|ref|XP_003553400.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 296
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/245 (87%), Positives = 219/245 (89%), Gaps = 16/245 (6%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKP+G S EFLSSSLGRWQ+R N RLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPSGGSSEFLSSSLGRWQSRVKNF----------------RLG 104
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 105 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 164
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLE GQSVEMGTIHAGDFMRRFCSNLGM NQAVKAAQEAVQKSEEF
Sbjct: 165 KEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEF 224
Query: 241 DIRYS 245
DIR S
Sbjct: 225 DIRRS 229
>gi|224135681|ref|XP_002322134.1| predicted protein [Populus trichocarpa]
gi|222869130|gb|EEF06261.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/245 (77%), Positives = 214/245 (87%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D++C DCK+ TE+VFDHSAGDT+CSECGL+LE+HS+DETSEWRTF+NES D+DP RVG
Sbjct: 1 MEDSYCPDCKRLTEIVFDHSAGDTICSECGLILEAHSVDETSEWRTFSNESSDHDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP NPLLADGGLST I+K NG S E LS SLG+WQ+RG+NPDR I AFK+IA M+DRLG
Sbjct: 61 GPLNPLLADGGLSTTISKTNGGSNELLSCSLGKWQSRGANPDRNRIQAFKSIAAMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LV TIKDRANEIYKKVEDQK +GRNQDA+LAACLYIACRQE+K RTVKEICSV NG TK
Sbjct: 121 LVTTIKDRANEIYKKVEDQKPLKGRNQDAILAACLYIACRQENKARTVKEICSVVNGTTK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVK L +E G S+EMGTIHA D++RRFCSNLGM NQAVKAA EAVQKSEE
Sbjct: 181 KEIGRAKEFIVKHLEVEMGHSMEMGTIHAADYLRRFCSNLGMTNQAVKAAHEAVQKSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>gi|147790475|emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
Length = 312
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/216 (90%), Positives = 201/216 (93%)
Query: 30 GLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSS 89
GL + +TSEWRTFANESGDNDPVRVGGP+NPLL DGGLSTVIAKPNG SG+FLSS
Sbjct: 30 GLCWSLTRLMQTSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPNGVSGDFLSS 89
Query: 90 SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDA 149
SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS+RGRNQDA
Sbjct: 90 SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDA 149
Query: 150 LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHA 209
LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL E GQSVEMGTIHA
Sbjct: 150 LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHA 209
Query: 210 GDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRYS 245
GDFMRRFCSNLGM NQ VKAAQEAVQKSEEFDIR S
Sbjct: 210 GDFMRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRS 245
>gi|168039347|ref|XP_001772159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676490|gb|EDQ62972.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/246 (73%), Positives = 211/246 (85%), Gaps = 3/246 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C +C+K TEVV DH+AGD VC+ECGLVLE HS+DE+SEWRTF+ +S +DPVRVG
Sbjct: 1 MNKTVCPECRKATEVVVDHAAGDMVCAECGLVLEQHSVDESSEWRTFS-DSTSSDPVRVG 59
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLST+I+KPNGA G+F+SS LGRWQNRGSNPDR LI+AF++I TM+DRLG
Sbjct: 60 GPSNPLLTDGGLSTIISKPNGAQGDFMSS-LGRWQNRGSNPDRSLIIAFRSIGTMADRLG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK-EICSVANGAT 179
LV+TIKDRANEIYKKVED KS RGR+QDA+LAACLYIACRQEDKPRT K EICSVANGA+
Sbjct: 119 LVSTIKDRANEIYKKVEDLKSIRGRSQDAILAACLYIACRQEDKPRTFKAEICSVANGAS 178
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KK+IGRA ++IVKQL + G S+EMGTIHAGDF+RRFCS+L M N V+AA E V+KSE
Sbjct: 179 KKDIGRATKFIVKQLEEDMGISMEMGTIHAGDFLRRFCSHLNMENNEVRAATETVKKSEM 238
Query: 240 FDIRYS 245
DIR S
Sbjct: 239 LDIRKS 244
>gi|302766794|ref|XP_002966817.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
gi|300164808|gb|EFJ31416.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
Length = 310
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/245 (70%), Positives = 209/245 (85%), Gaps = 2/245 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C DC++ ++V DH+AGDTVC ECGLVLE+H IDE+SEWRTF+++SG NDPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLVLEAHFIDESSEWRTFSDDSGSNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLST I++ NG+ G++ ++LG+WQN G+NPDR L+LAFKTI TM+DRLG
Sbjct: 61 GPSNPLLTDGGLSTTISRGNGSQGDY--AALGKWQNHGTNPDRALLLAFKTIGTMADRLG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LV+TIKDRA+EIYKKVED KS RGR+QDA+LAACLYIACRQEDKPRT KEI SVANGATK
Sbjct: 119 LVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFKEIHSVANGATK 178
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRA +IVK+L E G+S+ MG+IHAGDF+RRFCS+LGM NQAV+AA + V+K EE
Sbjct: 179 KEIGRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRFCSHLGMTNQAVRAATDTVKKVEEL 238
Query: 241 DIRYS 245
DIR S
Sbjct: 239 DIRKS 243
>gi|302755524|ref|XP_002961186.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
gi|300172125|gb|EFJ38725.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
Length = 300
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 162/245 (66%), Positives = 197/245 (80%), Gaps = 12/245 (4%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C DC++ ++V DH+AGDTVC ECGL+ TF+++SG NDPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLL----------RMETFSDDSGSNDPVRVG 50
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLL DGGLST I++ NG+ G++ ++LG+WQN G+NPDR L+LAFKTI TM+DRLG
Sbjct: 51 GPSNPLLTDGGLSTTISRGNGSQGDY--AALGKWQNHGTNPDRALLLAFKTIGTMADRLG 108
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LV+TIKDRA+EIYKKVED KS RGR+QDA+LAACLYIACRQEDKPRT KEI SVANGATK
Sbjct: 109 LVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFKEIHSVANGATK 168
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRA +IVK+L E G+S+ MG+IHAGDF+RRFCS+LGM NQAV+AA + V+K EE
Sbjct: 169 KEIGRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRFCSHLGMTNQAVRAATDTVKKVEEL 228
Query: 241 DIRYS 245
DIR S
Sbjct: 229 DIRKS 233
>gi|168012200|ref|XP_001758790.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689927|gb|EDQ76296.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/243 (59%), Positives = 180/243 (74%), Gaps = 3/243 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M + CS+C+K T+VV D +AGD +C+ECGLVLE S+DET EWR FA+ S D R+G
Sbjct: 1 MYETVCSECRKVTQVVEDRAAGDVLCAECGLVLEQRSVDETREWRWFAD-SSSIDRERIG 59
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GP+NPLLADGGLS+ I+K NGA G+ +SS L R G PD+ I+AF++I M+DRLG
Sbjct: 60 GPSNPLLADGGLSSFISKSNGAQGDVMSSIL-RQSKLGLIPDQSRIIAFRSIGNMADRLG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK-EICSVANGAT 179
LV+TIKDRANEIYK V D K +R R+ +A+LA+CLYIACRQEDKPRT K EICSV+NGA+
Sbjct: 119 LVSTIKDRANEIYKNVVDLKLTRNRSHEAILASCLYIACRQEDKPRTFKEEICSVSNGAS 178
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
K + GR + +VKQ+ G S+EMGTIHAGDF RRFCS+L M V+A E V+KSE
Sbjct: 179 KTDTGRITKKLVKQIEKGMGISMEMGTIHAGDFSRRFCSHLDMEKNEVRAITETVKKSEM 238
Query: 240 FDI 242
I
Sbjct: 239 LVI 241
>gi|242088689|ref|XP_002440177.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
gi|241945462|gb|EES18607.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
Length = 311
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/251 (49%), Positives = 167/251 (66%), Gaps = 12/251 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVRVGGP 62
+C DC + TEVV DH+ GDT+C+EC LVLE+H IDE SEWR FA++ G D DP RVGGP
Sbjct: 7 YCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDPSRVGGP 66
Query: 63 TNPLLADGGLSTVIA-----KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
++P L++ L T IA K G G L G++ ++ L+ AF IA M+D
Sbjct: 67 SDPFLSNTPLVTRIAYAGPQKTQGEGGHALPRMRVSAGAGGADHEQALVDAFHAIADMAD 126
Query: 118 RLGLVATIKDRANEIYKKVEDQKS--SRGRNQDALLAACLYIACRQEDKPRTVKEICSV- 174
RLGLV TI+DRA ++YK++++ K+ +RG+ +D AACLY+ACR E KPRT KE+ +V
Sbjct: 127 RLGLVGTIRDRAKDVYKRLDEAKACPTRGKKRDVFYAACLYVACRNEGKPRTYKELATVT 186
Query: 175 -ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
A + KKEIG+ I K LG E GQ +++G + A D+MRRFCS LGM NQ ++AAQEA
Sbjct: 187 AAGASAKKEIGKMTTLIKKVLGEEAGQVMDIGVVRAADYMRRFCSRLGMGNQEMRAAQEA 246
Query: 234 VQKSEE-FDIR 243
++ E D+R
Sbjct: 247 ARRLENGLDVR 257
>gi|212721546|ref|NP_001131844.1| uncharacterized protein LOC100193219 [Zea mays]
gi|194692694|gb|ACF80431.1| unknown [Zea mays]
gi|414886464|tpg|DAA62478.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 136
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 112/135 (82%), Positives = 121/135 (89%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKK 135
LVATIK R I +
Sbjct: 121 LVATIKTREKVIQNR 135
>gi|413946339|gb|AFW78988.1| hypothetical protein ZEAMMB73_349781 [Zea mays]
Length = 311
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/251 (49%), Positives = 167/251 (66%), Gaps = 13/251 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVRVGGP 62
+C DC + TEVV DH+ GDT+C+EC LVLE+H IDE SEWR FA++ G D DP RVGG
Sbjct: 8 YCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDPSRVGGS 67
Query: 63 TNPLLADGGLSTVIAK--PNGASGEFLSSSLGRWQ---NRGSNPDRGLILAFKTIATMSD 117
++P LA+ L T IA P A GE +L R + G+ ++ L+ F IA M+D
Sbjct: 68 SDPFLANMPLVTQIAYAGPQKAQGEG-GHALPRLHVSASGGAGGEQTLVEGFHAIADMAD 126
Query: 118 RLGLVATIKDRANEIYKKVEDQKS--SRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 175
RLGLVATI+DRA ++YK++ + ++ RG+ +DA AACLY+ACR E KPRT KE+ +V
Sbjct: 127 RLGLVATIRDRAKDVYKRLGEARACPGRGKKRDAFYAACLYVACRNEGKPRTYKELATVT 186
Query: 176 N--GATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
+ A KKEIG+ I K LG E GQ +++G + D+MRRFCS LGM N+ ++AAQEA
Sbjct: 187 SDGAAAKKEIGKMTMLIKKVLGEEAGQVMDIGVVRPSDYMRRFCSRLGMGNREMRAAQEA 246
Query: 234 VQKSEE-FDIR 243
++ E D+R
Sbjct: 247 ARRLENGLDVR 257
>gi|194701258|gb|ACF84713.1| unknown [Zea mays]
Length = 198
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/131 (84%), Positives = 122/131 (93%)
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+DRLGLVATIKDRANEI+KK+ED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSV
Sbjct: 1 MADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSV 60
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
ANGATKKEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGM NQAV AA+EAV
Sbjct: 61 ANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAV 120
Query: 235 QKSEEFDIRYS 245
Q+SEE DIR S
Sbjct: 121 QRSEELDIRRS 131
>gi|224141495|ref|XP_002324107.1| predicted protein [Populus trichocarpa]
gi|222867109|gb|EEF04240.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 161/239 (67%), Gaps = 11/239 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
+C DCK +T +V DH GDT+CS+CGLVLES IDE +EWRTF +++ D DP RVG N
Sbjct: 1 YCKDCKANTYIVLDHCTGDTICSDCGLVLESCYIDEIAEWRTFNDDNNDKDPNRVGYNVN 60
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVAT 124
PLL+ G L T+I+ G ++ RWQ+ SN DR L+ F I +++RLGLV
Sbjct: 61 PLLSQGNLKTLISNNKG------DHAIPRWQDGVSNSDRVLLQGFDIIEIIANRLGLVRP 114
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
IKDRA EI+KK+E+QK+ R +D++ AACL+I+ R+ PRT+ EI SV G TKKEI
Sbjct: 115 IKDRAKEIFKKIEEQKTCVMRKRDSICAACLFISSRENKLPRTLNEISSVVYGVTKKEIN 174
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIR 243
+A + I + + LE +MGT++ + +RRFCSNLGM N AVKA EAV+K ++ DIR
Sbjct: 175 KAVQSIKRHVELE-----DMGTLNPSELVRRFCSNLGMKNHAVKAVHEAVEKIQDVDIR 228
>gi|115465251|ref|NP_001056225.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|57863857|gb|AAW56898.1| putative transcription initiation factor TFIIB [Oryza sativa
Japonica Group]
gi|113579776|dbj|BAF18139.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|215741580|dbj|BAG98075.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 166/253 (65%), Gaps = 14/253 (5%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLADGGLSTVI----AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
+P L D T I A P A L + R G +P+ L+ AF+ IA M+D
Sbjct: 70 RADPFLPDHVGGTTIAYSSAPPKSADAAPLLTRR-RVDVVGPSPENALVAAFRGIADMAD 128
Query: 118 RLGLVATIKDRANEIYKKVEDQKS---SRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
RLGLVATI+DRA E++KK+ + + RGRN+DA+ AACL+IACR E PRT KE+ SV
Sbjct: 129 RLGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASV 188
Query: 175 A--NGATKKEIGRAKEYIVKQLGLE-TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
A KKEIGR I K LG + G+++++G + + D++RRFCS LG+ +Q V+AA
Sbjct: 189 TAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAG 248
Query: 232 EAVQKSEE-FDIR 243
+AV++ EE D+R
Sbjct: 249 DAVRRLEERLDVR 261
>gi|223975949|gb|ACN32162.1| unknown [Zea mays]
gi|414886467|tpg|DAA62481.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 144
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 102/118 (86%), Positives = 110/118 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DR
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADR 118
>gi|125553198|gb|EAY98907.1| hypothetical protein OsI_20862 [Oryza sativa Indica Group]
Length = 319
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/255 (48%), Positives = 166/255 (65%), Gaps = 15/255 (5%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLADGGLSTVI----AKPNGASGEFLSSSL---GRWQNRGSNPDRGLILAFKTIAT 114
+P L D T I A P AS ++ L R G +P+ L+ AF+ IA
Sbjct: 70 RADPFLPDHVGGTTIAYSAAPPKNASAADAAAPLLTRRRVDVVGPSPENALVAAFRGIAD 129
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKS--SRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+DRLGLVATI+DRA E++KK+ + RGRN+D + AACL+IACR E PRT KE+
Sbjct: 130 MADRLGLVATIRDRAKEVFKKLGEAPKGFPRGRNRDTVYAACLFIACRNEGMPRTYKELA 189
Query: 173 SVA--NGATKKEIGRAKEYIVKQLGLE-TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
SV A KKEIGR I K LG + G+++++G + + D++RRFCS LG+ +Q V+A
Sbjct: 190 SVTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRA 249
Query: 230 AQEAVQKSEE-FDIR 243
A +AV++ EE D+R
Sbjct: 250 AGDAVRRLEERLDVR 264
>gi|326500524|dbj|BAK06351.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 164/250 (65%), Gaps = 12/250 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA--NESGDNDPVRVGGP 62
+C +C + TEV+ DH+ GDT+C+EC LVL++H IDE SEWR FA D DP RVG
Sbjct: 14 YCPECHRATEVMLDHATGDTICTECALVLDAHYIDECSEWRNFADDGGGDDRDPSRVGAS 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFL-SSSLGRWQNRGSNP----DRGLILAFKTIATMSD 117
+P L + LSTVI N +S + +++L R R ++ + L+ F+ IA M+D
Sbjct: 74 GDPFL-NAKLSTVIVYSNKSSATGVGANALPRMSVRDADASAASENTLVDGFRGIADMAD 132
Query: 118 RLGLVATIKDRANEIYKKVEDQK-SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176
RLGLVATI+D A E +KK+ D K S RGR +DA+ AACLYIACR PRT KE+ SV
Sbjct: 133 RLGLVATIRDLAKETFKKLYDAKGSPRGRKRDAVYAACLYIACRNLGMPRTYKELASVTA 192
Query: 177 GA--TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
G +KK+IG+ +I + LG E GQ +++G + A D++RRFCS LG+ NQ V+ AQEAV
Sbjct: 193 GGAESKKDIGKMTTHIKRLLGEEDGQVMDIGVVSASDYLRRFCSRLGLGNQEVRDAQEAV 252
Query: 235 QKSEE-FDIR 243
+K EE D+R
Sbjct: 253 RKVEEGLDVR 262
>gi|24414276|gb|AAN59779.1| Putative transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|108706635|gb|ABF94430.1| Transcription factor TFIIB repeat family protein [Oryza sativa
Japonica Group]
gi|125542744|gb|EAY88883.1| hypothetical protein OsI_10362 [Oryza sativa Indica Group]
Length = 308
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/244 (47%), Positives = 156/244 (63%), Gaps = 6/244 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVRVGGP 62
+C +C + T VV DH+ GDT+C+EC LVLE IDETSEWRTF++ D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
++P L+ L TV+A + + S R ++ S D L +AF+ I+ M+DRL LV
Sbjct: 71 SDPFLSHAELGTVVAPAKRQAKDTASPPHVRVDSK-SGQDSSLAVAFRAISDMADRLQLV 129
Query: 123 ATIKDRANEIYKKVEDQK-SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT-K 180
ATI+DRA E++KK+E+ K +R RN+DA AACL+IACR E PRT+KE+ SV K
Sbjct: 130 ATIRDRAKELFKKMEEAKLCARVRNRDAAYAACLHIACRNEGNPRTLKELASVMRDCQDK 189
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE- 239
KEIGR + I + LG E G ++EMG + A D+M RF S LGM V+ AQ A Q E+
Sbjct: 190 KEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRFGSRLGMGKPEVREAQRAAQTLEDK 249
Query: 240 FDIR 243
D+R
Sbjct: 250 LDVR 253
>gi|357128609|ref|XP_003565964.1| PREDICTED: transcription initiation factor IIB-2-like [Brachypodium
distachyon]
Length = 338
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 161/259 (62%), Gaps = 22/259 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG---DNDPVRVGG 61
+C+DC + TEVV DH GDT+C++CG+VL+ H IDE EWR F ++S D DP RVG
Sbjct: 11 YCTDCHRATEVVLDHGTGDTICTDCGMVLDEHYIDEGQEWRVFGDDSAGGEDRDPCRVGS 70
Query: 62 PTNPLL-ADGGLSTVIAK-----------PNGASGEFLSSSLGRWQNRGSNPDRGLILAF 109
+P L DG LST I + A+ L + G PD L+ AF
Sbjct: 71 AGDPFLRGDGLLSTCIVHSAKSKSRSRSGSDPAAALHLPRMM--LDVGGPAPDTALVDAF 128
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKS-SRG-RNQDALLAACLYIACRQEDKPRT 167
+ IA M+DRLGLVATI+D A + +K++E+ K RG R++DA+ AACLY+ACR+E PRT
Sbjct: 129 RGIADMADRLGLVATIRDSAKQTFKRLEEAKGCPRGARSRDAVYAACLYVACRKEGMPRT 188
Query: 168 VKEICSVA--NGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
KE+ SV A +K+IG+ +I K LG E GQ +++G + A ++RRFCS LG+ NQ
Sbjct: 189 YKELASVTAQGAAARKDIGKMTTHIKKLLGEEDGQVLDIGVVRATSYLRRFCSILGLGNQ 248
Query: 226 AVKAAQEAVQKSE-EFDIR 243
+ AAQEAV + E E D+R
Sbjct: 249 QMLAAQEAVSRLEMELDVR 267
>gi|270006604|gb|EFA03052.1| hypothetical protein TcasGA2_TC010900 [Tribolium castaneum]
Length = 315
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 155/243 (63%), Gaps = 10/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
P NPLL L+T+I P F S + R+QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLTTMIG-PGRGDASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D ++ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 128 NLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-IS 186
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
K+EIGR + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E
Sbjct: 187 KREIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVE 240
Query: 240 FDI 242
DI
Sbjct: 241 LDI 243
>gi|383862315|ref|XP_003706629.1| PREDICTED: transcription initiation factor IIB-like [Megachile
rotundata]
Length = 315
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 155/243 (63%), Gaps = 10/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F + + ++QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGVSKYQNRRTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 128 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-IS 186
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGR + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E
Sbjct: 187 KKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVE 240
Query: 240 FDI 242
DI
Sbjct: 241 IDI 243
>gi|332376975|gb|AEE63627.1| unknown [Dendroctonus ponderosae]
Length = 315
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 154/238 (64%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CSSHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L L+T+I P + + + R+QNR + + DR LI AFK I M+DR+ L T
Sbjct: 74 LGGSDLTTMIG-PGRGDASYDTFGVARYQNRRTMNSSDRALINAFKEINAMADRINLPRT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D ++ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +K+EIG
Sbjct: 133 IVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKREIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E DI
Sbjct: 192 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDI 243
>gi|189236988|ref|XP_970151.2| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) [Tribolium castaneum]
Length = 313
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 157/243 (64%), Gaps = 12/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
P NPLL L+T+I P AS F S + R+QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLTTMIG-PGDAS--FDSFGVARYQNRKTMSSSDRALINAFREINGMADRI 125
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D ++ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 126 NLPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-IS 184
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
K+EIGR + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E
Sbjct: 185 KREIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVE 238
Query: 240 FDI 242
DI
Sbjct: 239 LDI 241
>gi|156546454|ref|XP_001607291.1| PREDICTED: transcription initiation factor IIB-like [Nasonia
vitripennis]
Length = 315
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 156/238 (65%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVGGP NPL
Sbjct: 14 CYAHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKAGTDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L LST+I GA+ F + + ++QNR + + DR LI AF+ I M+DR+ L T
Sbjct: 74 LNGSDLSTIIGPGTGAA-SFDAFGVSKYQNRRTMNSSDRTLINAFREINAMADRINLPRT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ + DI
Sbjct: 192 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVDIDI 243
>gi|350417950|ref|XP_003491660.1| PREDICTED: transcription initiation factor IIB-like [Bombus
impatiens]
Length = 315
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 154/243 (63%), Gaps = 10/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDASLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 128 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-IS 186
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGR + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E
Sbjct: 187 KKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVE 240
Query: 240 FDI 242
DI
Sbjct: 241 IDI 243
>gi|158288246|ref|XP_310128.4| AGAP009558-PA [Anopheles gambiae str. PEST]
gi|157019157|gb|EAA05904.4| AGAP009558-PA [Anopheles gambiae str. PEST]
Length = 316
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 151/238 (63%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYSHPEAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 ITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K L SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 193 RCFKLTLKAL----ATSVDL--ITTADFMSRFCANLDLPNVVQRAATHIARKAVEMDI 244
>gi|307179392|gb|EFN67722.1| Transcription initiation factor IIB [Camponotus floridanus]
Length = 315
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 10/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKICCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGIDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
P NPLL LSTVI GA+ F ++QNR S+ DR L+ AF+ I M+DR+
Sbjct: 69 PENPLLNGADLSTVIGPGTGAA-SFDGFGTAKYQNRRTLSSSDRALLNAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 128 NLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-IS 186
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGR + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E
Sbjct: 187 KKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVE 240
Query: 240 FDI 242
DI
Sbjct: 241 IDI 243
>gi|48102797|ref|XP_395432.1| PREDICTED: transcription initiation factor IIB isoform 1 [Apis
mellifera]
gi|380019249|ref|XP_003693523.1| PREDICTED: transcription initiation factor IIB-like [Apis florea]
Length = 315
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 154/243 (63%), Gaps = 10/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 128 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-IS 186
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGR + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E
Sbjct: 187 KKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVE 240
Query: 240 FDI 242
DI
Sbjct: 241 IDI 243
>gi|354801973|gb|AER39748.1| transcription initiation factor IIB [Cyprinus carpio]
Length = 316
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 121/240 (50%), Positives = 155/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF NE NDP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATNDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TMSDR+ L
Sbjct: 75 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSADRAMLNAFKEITTMSDRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQIAATYIARKAVELDL 244
>gi|307197188|gb|EFN78510.1| Transcription initiation factor IIB [Harpegnathos saltator]
Length = 373
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 154/243 (63%), Gaps = 10/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 67 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 126
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL+ LST+I GA+ F ++QNR S+ DR L+ AF+ I M+DR+
Sbjct: 127 PENPLLSGSDLSTMIGPGTGAA-SFDGFGTAKYQNRRTMSSSDRALVNAFREINGMADRI 185
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 186 NLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-IS 244
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGR + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E
Sbjct: 245 KKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVE 298
Query: 240 FDI 242
DI
Sbjct: 299 IDI 301
>gi|322794062|gb|EFZ17278.1| hypothetical protein SINV_13223 [Solenopsis invicta]
Length = 321
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 10/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 4 TNKICCYAHPDATLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 63
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F ++QNR S+ DR L+ AF+ I M+DR+
Sbjct: 64 PENPLLNGADLSTMIGPGTGAA-SFDGFGTAKYQNRRTMSSSDRALLNAFREINGMADRI 122
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 123 NLPKTIVDRANALFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-IS 181
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGR + I+K LET SV++ I GDFM RFCSNLG+ N KAA +K+ E
Sbjct: 182 KKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQKAATHIARKAVE 235
Query: 240 FDI 242
DI
Sbjct: 236 IDI 238
>gi|363736712|ref|XP_422356.3| PREDICTED: transcription initiation factor IIB [Gallus gallus]
Length = 316
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 156/240 (65%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|224057480|ref|XP_002195495.1| PREDICTED: transcription initiation factor IIB isoform 1
[Taeniopygia guttata]
Length = 316
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 156/240 (65%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|449268065|gb|EMC78935.1| Transcription initiation factor IIB [Columba livia]
Length = 318
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 156/240 (65%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 17 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 77 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 134 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 192
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 193 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 246
>gi|17136758|ref|NP_476888.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|442627311|ref|NP_001260349.1| transcription factor IIB, isoform B [Drosophila melanogaster]
gi|194761835|ref|XP_001963128.1| GF15790 [Drosophila ananassae]
gi|194859971|ref|XP_001969489.1| GG10133 [Drosophila erecta]
gi|195146744|ref|XP_002014344.1| GL19146 [Drosophila persimilis]
gi|195434140|ref|XP_002065061.1| GK14874 [Drosophila willistoni]
gi|195578215|ref|XP_002078961.1| GD23702 [Drosophila simulans]
gi|135628|sp|P29052.1|TF2B_DROME RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|158538|gb|AAA28929.1| RNA polymerase II transcription factor [Drosophila melanogaster]
gi|158540|gb|AAA28930.1| transcription factor IIB [Drosophila melanogaster]
gi|414282|gb|AAA68626.1| transcription factor IIB [Drosophila melanogaster]
gi|1016268|gb|AAA79093.1| transcription factor IIB [Drosophila melanogaster]
gi|7297699|gb|AAF52951.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|41058137|gb|AAR99117.1| RE29729p [Drosophila melanogaster]
gi|51092169|gb|AAT94498.1| LD24035p [Drosophila melanogaster]
gi|190616825|gb|EDV32349.1| GF15790 [Drosophila ananassae]
gi|190661356|gb|EDV58548.1| GG10133 [Drosophila erecta]
gi|194106297|gb|EDW28340.1| GL19146 [Drosophila persimilis]
gi|194161146|gb|EDW76047.1| GK14874 [Drosophila willistoni]
gi|194190970|gb|EDX04546.1| GD23702 [Drosophila simulans]
gi|220953484|gb|ACL89285.1| TfIIB-PA [synthetic construct]
gi|440213669|gb|AGB92884.1| transcription factor IIB, isoform B [Drosophila melanogaster]
Length = 315
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 154/238 (64%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 192 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|195118790|ref|XP_002003919.1| GI20422 [Drosophila mojavensis]
gi|195384910|ref|XP_002051155.1| TfIIB [Drosophila virilis]
gi|193914494|gb|EDW13361.1| GI20422 [Drosophila mojavensis]
gi|194147612|gb|EDW63310.1| TfIIB [Drosophila virilis]
Length = 315
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 154/238 (64%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 192 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|195473679|ref|XP_002089120.1| GE18945 [Drosophila yakuba]
gi|194175221|gb|EDW88832.1| GE18945 [Drosophila yakuba]
Length = 315
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 154/238 (64%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 192 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|195339829|ref|XP_002036519.1| GM18405 [Drosophila sechellia]
gi|194130399|gb|EDW52442.1| GM18405 [Drosophila sechellia]
Length = 315
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 154/238 (64%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 192 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|157109648|ref|XP_001650764.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878948|gb|EAT43173.1| AAEL005368-PA [Aedes aegypti]
Length = 316
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 151/238 (63%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K L SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 193 RCFKLTLKAL----ATSVDL--ITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDI 244
>gi|312379141|gb|EFR25512.1| hypothetical protein AND_09086 [Anopheles darlingi]
Length = 338
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 150/239 (62%), Gaps = 10/239 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NP
Sbjct: 36 CCNSHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENP 95
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVA 123
LL+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L
Sbjct: 96 LLSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPK 154
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEI
Sbjct: 155 TITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEI 213
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GR + +K L SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 214 GRCFKLTLKAL----ATSVDL--ITTADFMSRFCANLDLPNVVQRAATHIARKAVEMDI 266
>gi|170041267|ref|XP_001848391.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
gi|167864865|gb|EDS28248.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
Length = 316
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 151/238 (63%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K L SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 193 RCFKLTLKAL----ATSVDL--ITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDI 244
>gi|431897056|gb|ELK06320.1| Transcription initiation factor IIB [Pteropus alecto]
Length = 316
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 155/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DGGLST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGGLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|327270757|ref|XP_003220155.1| PREDICTED: transcription initiation factor IIB-like [Anolis
carolinensis]
Length = 316
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 157/240 (65%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK IA+M+DR+ L
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEIASMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|157109646|ref|XP_001650763.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878947|gb|EAT43172.1| AAEL005368-PB [Aedes aegypti]
Length = 318
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 151/238 (63%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DR+ L T
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K L SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 193 RCFKLTLKAL----ATSVDL--ITTADFMSRFCANLDLPNTVQRAATHIARKAVEMDI 244
>gi|289740973|gb|ADD19234.1| transcription initiation factor tFIIB [Glossina morsitans
morsitans]
Length = 314
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 153/243 (62%), Gaps = 10/243 (4%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 8 TNKVCCFYHPDAPLIEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 67
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
P NPLL+ G LST+I P S F +S ++QNR S+ DR LI AFK I+ M+DR+
Sbjct: 68 PENPLLSGGDLSTIIG-PGTGSASFDASGSPKYQNRRTMSSSDRSLISAFKEISMMADRI 126
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +
Sbjct: 127 NLPKTIIDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-IS 185
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGR + +K LET SV++ I DFM RFC+NL + N +AA +K+ E
Sbjct: 186 KKEIGRCFKLTLK--ALET--SVDL--ITTADFMSRFCANLDLPNTVQRAATHIAKKAVE 239
Query: 240 FDI 242
DI
Sbjct: 240 MDI 242
>gi|222632446|gb|EEE64578.1| hypothetical protein OsJ_19430 [Oryza sativa Japonica Group]
Length = 287
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 156/249 (62%), Gaps = 35/249 (14%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
+P L D T IA S P +G IA M+DRLGL
Sbjct: 70 RADPFLPDHVGGTTIAY-------------------SSAPPKG-------IADMADRLGL 103
Query: 122 VATIKDRANEIYKKVEDQKS---SRGRNQDALLAACLYIACRQEDKPRTVKEICSVA--N 176
VATI+DRA E++KK+ + + RGRN+DA+ AACL+IACR E PRT KE+ SV
Sbjct: 104 VATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASVTAEG 163
Query: 177 GATKKEIGRAKEYIVKQLGLE-TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
A KKEIGR I K LG + G+++++G + + D++RRFCS LG+ +Q V+AA +AV+
Sbjct: 164 AAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAGDAVR 223
Query: 236 KSEE-FDIR 243
+ EE D+R
Sbjct: 224 RLEERLDVR 232
>gi|326925120|ref|XP_003208769.1| PREDICTED: transcription initiation factor IIB-like [Meleagris
gallopavo]
Length = 353
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 156/240 (65%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 52 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 111
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 112 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 168
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 169 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 227
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 228 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 281
>gi|126305849|ref|XP_001364333.1| PREDICTED: transcription initiation factor IIB-like [Monodelphis
domestica]
Length = 316
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 155/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|195051163|ref|XP_001993045.1| GH13607 [Drosophila grimshawi]
gi|193900104|gb|EDV98970.1| GH13607 [Drosophila grimshawi]
Length = 315
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 153/238 (64%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I+ M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISLMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKSSACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 192 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>gi|387019195|gb|AFJ51715.1| Transcription initiation factor IIB-like [Crotalus adamanteus]
Length = 316
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 158/240 (65%), Gaps = 16/240 (6%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSTLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK IA+M+DR+ L
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSFDRAMMNAFKEIASMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 244
>gi|41054405|ref|NP_955991.1| transcription initiation factor IIB [Danio rerio]
gi|33585882|gb|AAH55569.1| General transcription factor IIB [Danio rerio]
Length = 316
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 156/240 (65%), Gaps = 16/240 (6%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G L+T+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LNGGDLTTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDL 244
>gi|281203102|gb|EFA77303.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 344
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 157/243 (64%), Gaps = 12/243 (4%)
Query: 4 AFCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGG 61
FC C+ ++V D++ GD +C ECG+VL +DE SEWRTF+N ES +DP RVGG
Sbjct: 38 VFCHICQNPDPDIVEDYAKGDLICRECGVVLGDRIVDEHSEWRTFSNSESTGSDPNRVGG 97
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRL 119
PTNPLL D GLSTVI K G S + SS+L R QNRG+ N DR L+ FK IA M+D +
Sbjct: 98 PTNPLLRDSGLSTVIGK--GTSKD--SSALSRMQNRGALANGDRSLLAGFKEIARMADHM 153
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
GL T++D ANE++++++D+KS +GR+ D +LAA LYIACR E RT KEIC+++N +
Sbjct: 154 GLPQTVQDTANELFREMDDKKSMKGRSADGILAASLYIACRIEGITRTFKEICALSNNVS 213
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KK++GR + + + L + + I DFM RFC+NL + +AA+ + + E
Sbjct: 214 KKDLGRCYKMMKEAL----ANRINLQAISTEDFMTRFCTNLNLPLDVKRAAEHVSRTAME 269
Query: 240 FDI 242
I
Sbjct: 270 LGI 272
>gi|74228747|dbj|BAE21864.1| unnamed protein product [Mus musculus]
Length = 316
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTIIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|332221838|ref|XP_003260070.1| PREDICTED: transcription initiation factor IIB [Nomascus
leucogenys]
Length = 316
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD VC ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMVCPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|395530416|ref|XP_003767291.1| PREDICTED: transcription initiation factor IIB, partial
[Sarcophilus harrisii]
Length = 343
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 42 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 101
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QN S+ DR ++ AFK I TM+DR+ L
Sbjct: 102 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNHRTMSSSDRAMMNAFKEITTMADRINLP 158
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 159 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 217
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 218 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 271
>gi|355693876|gb|AER99482.1| proteinral transcription factor IIB [Mustela putorius furo]
Length = 289
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 23 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 82
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 83 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 139
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 140 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 198
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 199 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 252
>gi|291398561|ref|XP_002715921.1| PREDICTED: general transcription factor IIB isoform 1 [Oryctolagus
cuniculus]
Length = 315
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 14 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 73
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 74 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 130
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 131 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 189
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 190 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 243
>gi|346465163|gb|AEO32426.1| hypothetical protein [Amblyomma maculatum]
Length = 268
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 154/242 (63%), Gaps = 15/242 (6%)
Query: 5 FCSDCKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
FC+D H + V D+ AGD +C +CGLV+ +D +EWR F NE +NDP RVG
Sbjct: 13 FCTD---HPDAVLVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGAA 69
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+
Sbjct: 70 ENPLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSADRALLNAFREISNMADRIN 128
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L TI DR+N ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +K
Sbjct: 129 LTKTIVDRSNLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSK 187
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGR + I+K LET SV++ I GDFM RFCSNLG+ + KAA +K+ E
Sbjct: 188 KEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPSSVQKAATHIARKAVEL 241
Query: 241 DI 242
DI
Sbjct: 242 DI 243
>gi|4504193|ref|NP_001505.1| transcription initiation factor IIB [Homo sapiens]
gi|197102490|ref|NP_001126175.1| transcription initiation factor IIB [Pongo abelii]
gi|388453639|ref|NP_001253799.1| transcription initiation factor IIB [Macaca mulatta]
gi|57088257|ref|XP_537085.1| PREDICTED: transcription initiation factor IIB isoform 1 [Canis
lupus familiaris]
gi|296208436|ref|XP_002751091.1| PREDICTED: transcription initiation factor IIB [Callithrix jacchus]
gi|301764575|ref|XP_002917714.1| PREDICTED: transcription initiation factor IIB-like [Ailuropoda
melanoleuca]
gi|332809462|ref|XP_001147170.2| PREDICTED: transcription initiation factor IIB [Pan troglodytes]
gi|335287423|ref|XP_001929441.3| PREDICTED: transcription initiation factor IIB [Sus scrofa]
gi|344278936|ref|XP_003411247.1| PREDICTED: transcription initiation factor IIB [Loxodonta africana]
gi|395821801|ref|XP_003784220.1| PREDICTED: transcription initiation factor IIB [Otolemur garnettii]
gi|397473904|ref|XP_003808436.1| PREDICTED: transcription initiation factor IIB [Pan paniscus]
gi|402855161|ref|XP_003892206.1| PREDICTED: transcription initiation factor IIB [Papio anubis]
gi|403305513|ref|XP_003943308.1| PREDICTED: transcription initiation factor IIB [Saimiri boliviensis
boliviensis]
gi|426215922|ref|XP_004002218.1| PREDICTED: transcription initiation factor IIB [Ovis aries]
gi|426330265|ref|XP_004026141.1| PREDICTED: transcription initiation factor IIB [Gorilla gorilla
gorilla]
gi|135629|sp|Q00403.1|TF2B_HUMAN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=S300-II
gi|71153595|sp|Q5R886.1|TF2B_PONAB RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|75075384|sp|Q4R3J5.1|TF2B_MACFA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|37058|emb|CAA41958.1| IIB protein [Homo sapiens]
gi|339490|gb|AAA61149.1| transcription factor [Homo sapiens]
gi|18088837|gb|AAH20597.1| General transcription factor IIB [Homo sapiens]
gi|55730606|emb|CAH92024.1| hypothetical protein [Pongo abelii]
gi|67971960|dbj|BAE02322.1| unnamed protein product [Macaca fascicularis]
gi|158260667|dbj|BAF82511.1| unnamed protein product [Homo sapiens]
gi|167773977|gb|ABZ92423.1| general transcription factor IIB [synthetic construct]
gi|197692293|dbj|BAG70110.1| general transcription factor IIB [Homo sapiens]
gi|296489281|tpg|DAA31394.1| TPA: transcription initiation factor IIB [Bos taurus]
gi|306921489|dbj|BAJ17824.1| general transcription factor IIB [synthetic construct]
gi|349605874|gb|AEQ00964.1| Transcription initiation factor IIB-like protein [Equus caballus]
gi|380812116|gb|AFE77933.1| transcription initiation factor IIB [Macaca mulatta]
gi|383417803|gb|AFH32115.1| transcription initiation factor IIB [Macaca mulatta]
gi|384946652|gb|AFI36931.1| transcription initiation factor IIB [Macaca mulatta]
gi|410208354|gb|JAA01396.1| general transcription factor IIB [Pan troglodytes]
gi|410257026|gb|JAA16480.1| general transcription factor IIB [Pan troglodytes]
gi|410304078|gb|JAA30639.1| general transcription factor IIB [Pan troglodytes]
gi|410349827|gb|JAA41517.1| general transcription factor IIB [Pan troglodytes]
gi|228040|prf||1715332A transcription initiation factor IIB
Length = 316
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|114051409|ref|NP_001039607.1| transcription initiation factor IIB [Bos taurus]
gi|122143863|sp|Q2KIN8.1|TF2B_BOVIN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|86438483|gb|AAI12571.1| General transcription factor IIB [Bos taurus]
Length = 316
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|13591965|ref|NP_112303.1| transcription initiation factor IIB [Rattus norvegicus]
gi|21704076|ref|NP_663521.1| transcription initiation factor IIB [Mus musculus]
gi|51703316|sp|P62916.1|TF2B_RAT RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|51703324|sp|P62915.1|TF2B_MOUSE RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|55624|emb|CAA46766.1| alpha initiation factor [Rattus norvegicus]
gi|16741677|gb|AAH16637.1| General transcription factor IIB [Mus musculus]
gi|55391522|gb|AAH85345.1| General transcription factor IIB [Rattus norvegicus]
gi|74144729|dbj|BAE27344.1| unnamed protein product [Mus musculus]
gi|74147252|dbj|BAE27522.1| unnamed protein product [Mus musculus]
gi|74195918|dbj|BAE30517.1| unnamed protein product [Mus musculus]
gi|74211309|dbj|BAE26416.1| unnamed protein product [Mus musculus]
gi|74221596|dbj|BAE21509.1| unnamed protein product [Mus musculus]
gi|74226680|dbj|BAE26991.1| unnamed protein product [Mus musculus]
gi|148680097|gb|EDL12044.1| general transcription factor IIB [Mus musculus]
gi|149026117|gb|EDL82360.1| general transcription factor IIB [Rattus norvegicus]
Length = 316
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|291398563|ref|XP_002715922.1| PREDICTED: general transcription factor IIB isoform 2 [Oryctolagus
cuniculus]
Length = 316
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|213515448|ref|NP_001134769.1| Transcription initiation factor IIB [Salmo salar]
gi|209735868|gb|ACI68803.1| Transcription initiation factor IIB [Salmo salar]
gi|303661887|gb|ADM16053.1| Transcription initiation factor IIB [Salmo salar]
Length = 318
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF NE DP RVG NPL
Sbjct: 17 CPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 77 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 134 RNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 192
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 193 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATYIARKAVELDL 246
>gi|119593566|gb|EAW73160.1| general transcription factor IIB, isoform CRA_b [Homo sapiens]
Length = 373
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 72 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 131
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 132 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 188
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 189 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 247
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 248 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 301
>gi|281338510|gb|EFB14094.1| hypothetical protein PANDA_006057 [Ailuropoda melanoleuca]
gi|355558148|gb|EHH14928.1| hypothetical protein EGK_00940, partial [Macaca mulatta]
Length = 310
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 69 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 184
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 185 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 238
>gi|254934|gb|AAB23144.1| S300-II [Homo sapiens]
Length = 311
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 10 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 69
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 70 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 126
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 127 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 185
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 186 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 239
>gi|354495851|ref|XP_003510042.1| PREDICTED: transcription initiation factor IIB-like [Cricetulus
griseus]
Length = 477
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 176 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 235
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 236 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 292
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 293 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 351
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 352 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 405
>gi|432911722|ref|XP_004078691.1| PREDICTED: transcription initiation factor IIB-like [Oryzias
latipes]
Length = 318
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 150/238 (63%), Gaps = 12/238 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKAQKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L G L+T+I K G S F ++QNR S+ DR ++ AFK I+TM+DR+ L
Sbjct: 77 LNGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMLHAFKEISTMADRINLPRN 135
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 136 IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 194
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 195 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDL 246
>gi|345329183|ref|XP_001508212.2| PREDICTED: transcription initiation factor IIB-like, partial
[Ornithorhynchus anatinus]
Length = 310
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 69 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAIMNAFKEITNMADRINLP 125
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 126 RNIVDRTNTLFKQVYEQKSLKGRCNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 184
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 185 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVEIDL 238
>gi|338725267|ref|XP_001495317.2| PREDICTED: transcription initiation factor IIB-like [Equus
caballus]
Length = 415
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 114 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 173
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 174 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 230
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 231 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 289
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 290 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 343
>gi|242013902|ref|XP_002427639.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
gi|212512060|gb|EEB14901.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
Length = 313
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 150/238 (63%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 12 CYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGTDPSRVGGPENPL 71
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L L T+I P F + ++QNR S+ DR LI AF+ I M+DR+ L T
Sbjct: 72 LNGSDLCTMIG-PGRGDASFDGLGVSKYQNRRTMSSSDRALINAFREINAMADRINLPKT 130
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR DA+ +A LYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 131 IVDRANNLFKQVHDGKNLKGRANDAIASAALYIACRQEGVPRTFKEICAVSK-ISKKEIG 189
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET SV++ I GDFM RFCSNLG+ N +AA +K+ E DI
Sbjct: 190 RCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPNMVQRAATHIARKAVELDI 241
>gi|442754741|gb|JAA69530.1| Putative transcription initiation factor tfiib [Ixodes ricinus]
Length = 315
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 152/240 (63%), Gaps = 11/240 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC D +V D+ AGD +C +CGLV+ +D +EWR F NE +NDP RVG N
Sbjct: 13 FCPD-HPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGASEN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLV 122
PLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+ L
Sbjct: 72 PLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLT 130
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
TI DR+N ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 131 KTIVDRSNLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKE 189
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ + KAA +K+ E D+
Sbjct: 190 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDV 243
>gi|427787821|gb|JAA59362.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 315
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 153/240 (63%), Gaps = 11/240 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC D +V D+ AGD +C +CGLV+ +D +EWR F+NE ++DP RVG N
Sbjct: 13 FCPD-HPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASEN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLV 122
PLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+ L
Sbjct: 72 PLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLT 130
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
TI DRAN ++K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 131 KTIVDRANLLFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKE 189
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ + KAA +K+ E DI
Sbjct: 190 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDI 243
>gi|348500548|ref|XP_003437835.1| PREDICTED: transcription initiation factor IIB-like [Oreochromis
niloticus]
gi|50844459|gb|AAT84346.1| general transcription factor II B [Oreochromis mossambicus]
Length = 318
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 156/240 (65%), Gaps = 16/240 (6%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDACLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G L+T+I+K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DR+ L
Sbjct: 77 LNGGDLTTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 134 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 192
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 193 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDL 246
>gi|351705451|gb|EHB08370.1| Transcription initiation factor IIB, partial [Heterocephalus
glaber]
Length = 309
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 8 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNPL 67
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L++G LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 68 LSNGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 124
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 125 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 183
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 184 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 237
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 148/238 (62%), Gaps = 12/238 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G L+T+I K G S F ++QNR S+ DR ++ AFK I MSDR+ L
Sbjct: 75 LSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET + I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 193 RCFKLILK--ALETN----VDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
>gi|410967657|ref|XP_003990334.1| PREDICTED: transcription initiation factor IIB [Felis catus]
Length = 316
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/232 (50%), Positives = 152/232 (65%), Gaps = 14/232 (6%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRAN 130
+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L I DR N
Sbjct: 83 MIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTN 139
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I
Sbjct: 140 NLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLI 198
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 199 LK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|357624850|gb|EHJ75466.1| hypothetical protein KGM_17256 [Danaus plexippus]
Length = 285
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/220 (51%), Positives = 145/220 (65%), Gaps = 10/220 (4%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL+ G LST+I P
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG-PGRGDA 60
Query: 85 EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSS 142
F S + ++QNR S+ DR LI AF+ I TM+DR+ L TI DRAN ++K+V D K+
Sbjct: 61 SFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNL 120
Query: 143 RGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSV 202
+GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV
Sbjct: 121 KGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK--ALET--SV 175
Query: 203 EMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
++ I DFM RFC+NLG+ N +AA +K+ E DI
Sbjct: 176 DL--ITTADFMSRFCANLGLPNSVQRAATHIARKAGELDI 213
>gi|440912096|gb|ELR61695.1| Transcription initiation factor IIB, partial [Bos grunniens mutus]
Length = 310
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 153/240 (63%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ A D +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAADMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 69 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 184
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 185 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 238
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 149/238 (62%), Gaps = 12/238 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G L+T+I K GA+ F ++QNR S+ DR ++ AFK I M+DR+ L
Sbjct: 75 LSGGDLTTMIGKGTGAAS-FDEFGNNKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET + I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 193 RCFKLILK--ALETN----VDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
>gi|260797487|ref|XP_002593734.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
gi|229278962|gb|EEN49745.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
Length = 319
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + ++ D+ AGD +CSECGLV+ +D +EWRTF+NE D D RVG NPL
Sbjct: 18 CPEHPDAHLIEDYRAGDQICSECGLVVGDRVVDVGTEWRTFSNEKSDKDRSRVGAAENPL 77
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I++P+G++G F ++ NR S + DR L+ AF+ I M+DR+ L
Sbjct: 78 LSGGDLSTMISRPSGSAG-FNEDGSAKYHNRRSMSSSDRALVNAFREITGMADRINLPRN 136
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR ++K+V DQKS +GR+ DA+ AACLYIACRQE PRT KEIC+++ +KKEIG
Sbjct: 137 IVDRTQMLFKQVNDQKSLKGRSNDAISAACLYIACRQEGVPRTFKEICAISR-VSKKEIG 195
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET SVE+ I GDFM RFCSNL + +Q +AA +K+ E D+
Sbjct: 196 RVFKLILK--ALET--SVEL--ITTGDFMSRFCSNLNLPSQVQRAATHIARKAVELDL 247
>gi|47215967|emb|CAF96369.1| unnamed protein product [Tetraodon nigroviridis]
Length = 344
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 155/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 43 CPNHPDSTLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 102
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DR+ L
Sbjct: 103 LNGGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 159
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 160 RNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 218
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 219 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDL 272
>gi|74180816|dbj|BAE25617.1| unnamed protein product [Mus musculus]
Length = 316
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 152/240 (63%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIAYACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GD M RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDLMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>gi|321461615|gb|EFX72645.1| hypothetical protein DAPPUDRAFT_325996 [Daphnia pulex]
Length = 318
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/238 (48%), Positives = 152/238 (63%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE + DP RVGG N L
Sbjct: 15 CSAHPDAALIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANADPSRVGGSENAL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L LST+I P S F + ++QNR S+ DR L+ AFK I+ M+DR+ L T
Sbjct: 75 LNGTDLSTMIG-PGTGSASFDEHGVAKYQNRRTMSSSDRALVNAFKEISNMADRINLPRT 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA+ +ACLYI+CRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IVDRANNLFKQVHDGKNLKGRSNDAIASACLYISCRQEGVPRTFKEICAVSK-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET SV++ I DFM RFCSNLG+ +AA +K+ E DI
Sbjct: 193 RCFKLILK--ALET--SVDI--ITTADFMSRFCSNLGLPTMVQRAASHIARKAVELDI 244
>gi|410924600|ref|XP_003975769.1| PREDICTED: transcription initiation factor IIB-like [Takifugu
rubripes]
Length = 318
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C +CGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDSILVEDYRAGDMICPDCGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DR+ L
Sbjct: 77 LNGGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 134 RNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 192
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 193 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLGLPKQVQMAATFIARKAVELDL 246
>gi|291232704|ref|XP_002736287.1| PREDICTED: general transcription factor IIB-like [Saccoglossus
kowalevskii]
Length = 315
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 156/239 (65%), Gaps = 12/239 (5%)
Query: 8 DCKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H E +V D+ AGD +CSECGLV+ +D SEWRTF+N+ DP RVG N
Sbjct: 13 NCPSHPEATLVEDYHAGDMICSECGLVVGDRVVDVGSEWRTFSNDKAQKDPCRVGESENS 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
LL+ LST+I KP G +G F ++ N+ + + DR L+ AF+ IA M+DR+ L
Sbjct: 73 LLSGSNLSTIIGKPTGNAG-FNQDGSAKYHNKRTMNSSDRTLLNAFREIAQMADRINLPK 131
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI DR N ++K+V +Q++ RGR+ DA+ AACLYIACRQE PRT KEIC+++ +KKEI
Sbjct: 132 TIVDRTNTLFKQVHEQRTLRGRSNDAIAAACLYIACRQEGVPRTFKEICAISR-VSKKEI 190
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GR + I+K LET SV++ I GDFM RFCSNLG+ ++ KAA +K+ E D+
Sbjct: 191 GRCFKEILK--ALET--SVDL--ITTGDFMSRFCSNLGLPSRVQKAATHIAKKAVEMDL 243
>gi|427777857|gb|JAA54380.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 292
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 150/230 (65%), Gaps = 10/230 (4%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D+ AGD +C +CGLV+ +D +EWR F+NE ++DP RVG NPLL L+T
Sbjct: 21 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASENPLLNGSDLAT 80
Query: 75 VIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+ L TI DRAN +
Sbjct: 81 MIGKGTG-DASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLTKTIVDRANLL 139
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 140 FKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLILK 198
Query: 193 QLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
LET SV++ I GDFM RFCSNLG+ + KAA +K+ E DI
Sbjct: 199 --ALET--SVDL--ITTGDFMSRFCSNLGLPSSVQKAATHIARKAVELDI 242
>gi|432107068|gb|ELK32500.1| Transcription initiation factor IIB, partial [Myotis davidii]
Length = 310
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 153/240 (63%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDSILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+D LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 69 LSDRDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 126 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 184
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 185 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 238
>gi|198428626|ref|XP_002129417.1| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) (S300-II) [Ciona
intestinalis]
Length = 314
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 151/238 (63%), Gaps = 11/238 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + +V D+ AGD +C ECGLV+ +ID SEWRTF+N+ D RVG NPL
Sbjct: 12 CPQHPDAALVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFSNDKDSKDMSRVGDSQNPL 71
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L+ LST+I +P+G G + ++ NR + N DR LI AF+ I++M+DR+ L
Sbjct: 72 LSGSDLSTIIERPSGPPGSSNDNGFSQFSNRKTMNNSDRVLIHAFREISSMADRISLPKN 131
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR+N+++K+V D KS RGR DA+ AACLYIACRQE PRT KEIC+++ +KKEIG
Sbjct: 132 IVDRSNKLFKQVYDSKSLRGRANDAISAACLYIACRQEGVPRTFKEICAISR-ISKKEIG 190
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R+ + IVK LET V I +GDFM RFCSNL + + A +K+ E D+
Sbjct: 191 RSFKLIVK--NLETNVEV----ITSGDFMSRFCSNLNLPPYVQRGATYIARKAVEKDL 242
>gi|391338244|ref|XP_003743470.1| PREDICTED: transcription initiation factor IIB-like [Metaseiulus
occidentalis]
Length = 314
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 149/242 (61%), Gaps = 15/242 (6%)
Query: 5 FCSDCKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
FC D H E ++ D+ AGD +C +CGLV+ +D +EWR F NE NDP RVG
Sbjct: 12 FCPD---HPEANLIEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFQNEKSSNDPTRVGAA 68
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL LST+I + G F S ++ NR S+ DR LI AF+ I+ M DR+
Sbjct: 69 ENPLLNGSDLSTIIGRGTG-DASFDESGNAKYANRKTMSSSDRALIGAFREISAMGDRIN 127
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I DR+N ++K+V D +S +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +K
Sbjct: 128 LTRNIIDRSNALFKQVHDGRSLKGRSNDAIASACLYIACRQESVPRTFKEICAVSK-VSK 186
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGR + I+K LET SVE+ I GDFM RFCSNL ++ KAA +K+ E
Sbjct: 187 KEIGRCFKLILK--ALET--SVEL--ITTGDFMSRFCSNLALSTAVQKAATHIARKAVEM 240
Query: 241 DI 242
DI
Sbjct: 241 DI 242
>gi|412985634|emb|CCO19080.1| predicted protein [Bathycoccus prasinos]
Length = 396
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 146/240 (60%), Gaps = 8/240 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
CS CK T +V DH+ GD +C+ECGLV+ES +IDE SEWRTF++ + DP R G T
Sbjct: 17 ICSQCKVQTTLVEDHAQGDLICTECGLVVESRTIDECSEWRTFSDSDKAGGDPSRTVGAT 76
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
N +L+ GGLST I + P+G + +L R NR NPD+ L+ AF I M+DR+ +
Sbjct: 77 NNMLSGGGLSTTIGRNPDGT----FNQTLTRLHNREGNPDKVLMAAFSQIGDMADRMAMN 132
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
TIK A E+YK V S++G++ A+ AACLYIACRQE K RT KEIC A G+T KE
Sbjct: 133 QTIKSGACELYKVVTSSHSTQGKSSVAMFAACLYIACRQEGKTRTFKEICGAAVGSTVKE 192
Query: 183 IGRAKEYIVKQL-GLETGQSVEMGTIHAGDFMRRFCSNLGM-NNQAVKAAQEAVQKSEEF 240
IGR +I++ GL+ + I RFC NLG+ N++ ++ A+QK E
Sbjct: 193 IGRCYRFIIRVCEGLDLQMQMNEQMITPELLTNRFCGNLGLANSEFIRVCSSAIQKFREI 252
>gi|449508196|ref|XP_004176261.1| PREDICTED: transcription initiation factor IIB isoform 2
[Taeniopygia guttata]
Length = 285
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 147/222 (66%), Gaps = 14/222 (6%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+CSECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK 140
EF +S ++QNR S+ DR ++ AFK I M+DR+ L I DR N ++K+V +QK
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLFKQVYEQK 118
Query: 141 SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ 200
S +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET
Sbjct: 119 SLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET-- 173
Query: 201 SVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
SV++ I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 174 SVDL--ITTGDFMSRFCSNLGLPKQVQMAATHIARKAVELDL 213
>gi|198475810|ref|XP_002132499.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
gi|198137970|gb|EDY69901.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 148/238 (62%), Gaps = 13/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L + P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LXXXXXXXI--GPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 131
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 132 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 190
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 191 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 242
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 152/240 (63%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +CSE GLV+ +D SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHADALLVEDYRAGDMICSESGLVVGDRVVDVGSEWRTFSNDKAAKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+ G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSGGDLTTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET + I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALETN----VDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
>gi|156372338|ref|XP_001628995.1| predicted protein [Nematostella vectensis]
gi|156215985|gb|EDO36932.1| predicted protein [Nematostella vectensis]
Length = 310
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 154/239 (64%), Gaps = 14/239 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C+ H + ++ D+ AGD +CSECGLV+ +D SEWRTF+NE +DP RVG NPL
Sbjct: 9 CRHHPDAPLIEDYRAGDMICSECGLVVGDRVVDVGSEWRTFSNEKATSDPSRVGAAQNPL 68
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRLGLVA 123
L+ G LST+I KP+G + + R N S DR L+ AF+ I+ M+DR+ L
Sbjct: 69 LSGGDLSTLIEKPSGGNADI--EGFARTHNSRSGMSGADRSLMNAFREISIMADRINLPR 126
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
I DRAN+++K+V +QKS +GR+ D + +ACLYIACRQE PRT+KEIC++ +KKEI
Sbjct: 127 KIVDRANQLFKQVHEQKSLKGRSNDTIASACLYIACRQEGVPRTLKEICAIGK-ISKKEI 185
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GR + I+K LET SV++ I +GDFM RFCSNL + KAA +++ E D+
Sbjct: 186 GRCFKLILKH--LET--SVDL--ITSGDFMSRFCSNLTLPLSVQKAATYIARRAVELDL 238
>gi|255089519|ref|XP_002506681.1| predicted protein [Micromonas sp. RCC299]
gi|226521954|gb|ACO67939.1| predicted protein [Micromonas sp. RCC299]
Length = 364
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 140/224 (62%), Gaps = 10/224 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C K T ++ DH GD VC+ECGLVLES +DE+SEWRTF++ + DP R GPT
Sbjct: 18 ICRNCAKPTAIIEDHQQGDLVCTECGLVLESRVVDESSEWRTFSDSDKAGVDPNRTAGPT 77
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
N +LA+GGLST I K P+G + +L R NRG+NPDR L+ AF I M+D LG+
Sbjct: 78 NRMLANGGLSTSIGKNPDGTYNQ----TLTRLHNRGANPDRALLQAFGRIGEMADHLGMT 133
Query: 123 ATIKDRANEIYKK-VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ +KD A +IY+ V+ + G++Q A+ AA LYIACRQE RT KEIC A T K
Sbjct: 134 SVVKDGACDIYRTVVKPGQPLLGKSQPAMFAASLYIACRQEGTNRTFKEICGGAPNTTVK 193
Query: 182 EIGRAKEYIVKQL-GLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224
EIGR +YIVK + GL T +M I RFC NLG+ N
Sbjct: 194 EIGRCYKYIVKAIDGLNTQMMEQM--ITPEKLTNRFCGNLGLAN 235
>gi|348586162|ref|XP_003478838.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-like [Cavia porcellus]
Length = 317
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 153/241 (63%), Gaps = 17/241 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSEC-GLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C H + + D+ AGD +C C GL++ ID SEWRTF+N+ DP RVG NP
Sbjct: 15 CPNHPDAILVEDYRAGDMICPGCRGLLVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNP 74
Query: 66 LLADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGL 121
LL++G LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LLSNGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINL 131
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KK
Sbjct: 132 PRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKK 190
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241
EIGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D
Sbjct: 191 EIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELD 244
Query: 242 I 242
+
Sbjct: 245 L 245
>gi|195999146|ref|XP_002109441.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
gi|190587565|gb|EDV27607.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
Length = 340
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 147/238 (61%), Gaps = 11/238 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + ++ D+SAGD VC ECGLV+ ID SEWRTF+NE +DP RVG NPL
Sbjct: 38 CPRHPQANLIEDYSAGDIVCPECGLVVGDRIIDVGSEWRTFSNEKARSDPSRVGASENPL 97
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L L+TVI K S + ++NR + DR L+ AF+ IATM+DR+ L T
Sbjct: 98 LNGSDLTTVIGKSPSGSAAYDVDGNALYRNRSAMNGTDRSLVNAFQEIATMADRINLPKT 157
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRA ++K+ + KS +GR+ DAL +A LYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 158 IVDRAKVLFKQGYELKSLKGRSNDALASASLYIACRQEGVPRTFKEICAVSK-ISKKEIG 216
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET +VEM I DFM RFCSNL + N KAA ++ E D+
Sbjct: 217 RCFKAILK--ALET--NVEM--ISTQDFMSRFCSNLNLPNYVQKAASHIAHRAIELDL 268
>gi|344249199|gb|EGW05303.1| Transcription initiation factor IIB [Cricetulus griseus]
Length = 285
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 145/222 (65%), Gaps = 14/222 (6%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK 140
EF +S ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QK
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQK 118
Query: 141 SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ 200
S +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET
Sbjct: 119 SLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET-- 173
Query: 201 SVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 174 SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 213
>gi|119593565|gb|EAW73159.1| general transcription factor IIB, isoform CRA_a [Homo sapiens]
Length = 285
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 145/222 (65%), Gaps = 14/222 (6%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK 140
EF +S ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QK
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQK 118
Query: 141 SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ 200
S +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET
Sbjct: 119 SLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET-- 173
Query: 201 SVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 174 SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 213
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 145/238 (60%), Gaps = 8/238 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C H ++ D AGD +C ECGLV+ ID SEWRTF+N+ + DP RVG NP
Sbjct: 19 CCPSHPHANLIEDSHAGDLICPECGLVVADRVIDVGSEWRTFSNDKANIDPSRVGAAENP 78
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVAT 124
LL LST+I G AS S R ++ S+ +R LI AF+ I M+DR+ L T
Sbjct: 79 LLEGNDLSTIIGGVLGNASFNEDGSKKYRSKSNMSSTNRTLINAFREIGAMADRINLPKT 138
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRA+ ++K+V DQ++ RGR+ DA+ AACLYIACRQE PRT KEIC+V+ K+EIG
Sbjct: 139 IVDRAHTLFKQVNDQRTLRGRSNDAIAAACLYIACRQEGVPRTFKEICAVSR-VNKREIG 197
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET + I GDFM RFCSNL + + +AA +K++E D+
Sbjct: 198 RCFKLILK--ALETN----VVLITTGDFMSRFCSNLSLPPKVQRAATHIARKADELDL 249
>gi|338224396|gb|AEI88079.1| transcription initiation factor IIB-like protein [Scylla
paramamosain]
Length = 219
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 139/214 (64%), Gaps = 12/214 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE +NDP RVGGP NPL
Sbjct: 14 CPQHPEAHLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANNDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L LST+I P F ++QNR S+ DR LI AF+ I+ M+D++ L T
Sbjct: 74 LNGSDLSTIIG-PGAGGASFDGFGNSKYQNRRSMSSSDRALINAFREISNMADKINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA+ +A LYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANLLFKQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCS 218
R + I+K LET ++ I GDFM RFCS
Sbjct: 192 RCFKLILK--ALET----QVDLITTGDFMSRFCS 219
>gi|328703015|ref|XP_001951275.2| PREDICTED: transcription initiation factor IIB-like [Acyrthosiphon
pisum]
Length = 311
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 154/240 (64%), Gaps = 14/240 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVGGPTN 64
C++H + ++ D+ AGD +CSECGLV+ ID SEWRTF+N+ G N DP RVGG N
Sbjct: 8 CQQHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKGANSADPSRVGGAEN 67
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLV 122
PLL LST++ P+ F +++N+G + +R L+ A++ I M+DR+ L
Sbjct: 68 PLLNGSDLSTLVG-PSRGDASFDEFGGMKYKNKGMVCSTNRSLLNAYREIGLMADRINLP 126
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DRAN ++K+V D K+ +GR+ DA+ +A LYIACRQE PRT KEIC+V+ +KKE
Sbjct: 127 RNIVDRANVLFKQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFKEICAVSK-VSKKE 185
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFC NLG+ N +AA +K+ E+DI
Sbjct: 186 IGRVFKLILK--ALET--SVDL--ITTGDFMSRFCCNLGLPNMVQRAATHIAKKAVEYDI 239
>gi|39545936|gb|AAR28031.1| mutant TFIIB3 [Arabidopsis thaliana]
Length = 336
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 152/256 (59%), Gaps = 15/256 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 58
M + C DCK+ T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG TNP L G L T+I KP + LS S+L R N+ N + LI AF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
M+D L L I RA EI K + + K RG+ +A+ AA + ACR+ RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQ---SVEMGTIHAGDFMRRFCSNLGMNNQAV 227
I VANG KK+I KE +V + LE+ Q S I+ GD +RRFCS L ++ + +
Sbjct: 181 IAEVANGVDKKDIR--KESLVIKRVLESHQTSVSASQAIINTGDLVRRFCSKLDISQREI 238
Query: 228 KAAQEAVQKSEEFDIR 243
A EAV+K+E FDIR
Sbjct: 239 MAIPEAVEKAENFDIR 254
>gi|303284018|ref|XP_003061300.1| transcription initiation factor [Micromonas pusilla CCMP1545]
gi|226457651|gb|EEH54950.1| transcription initiation factor [Micromonas pusilla CCMP1545]
Length = 370
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C T ++ DH GD VC+ECGLVLE IDETSEWRTF++ + G DP R GPT
Sbjct: 18 ICKNCNVPTAIIEDHQQGDLVCTECGLVLEQGVIDETSEWRTFSDSDKGGADPSRTAGPT 77
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
N +LA GGL T I + P+G + +L R NRG+NPD+ LI AF I ++D LG+
Sbjct: 78 NRMLAHGGLGTSIGRNPDGTYNQ----TLTRLHNRGANPDKALIAAFGKINELADHLGVT 133
Query: 123 ATIKDRANEIYKK-VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ +KD A ++Y+ V+ S G++Q+A+ AACLYI+CRQE RT KEIC A T K
Sbjct: 134 SVVKDGACDVYRMVVKPGVSIAGKSQNAMFAACLYISCRQEGTNRTFKEICGGAVNTTVK 193
Query: 182 EIGRAKEYIVKQL-GLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224
EIG+ ++IVK + GL T +M I RFC NLG+ N
Sbjct: 194 EIGKCYKFIVKTIDGLNTTMMEQM--ITPEKLTNRFCGNLGLAN 235
>gi|15228689|ref|NP_189584.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|11994519|dbj|BAB02583.1| transcription initiation factor IIB (TFIIB)-like protein
[Arabidopsis thaliana]
gi|332644057|gb|AEE77578.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 336
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 152/256 (59%), Gaps = 15/256 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 58
M + C DCK+ T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG TNP L G L T+I KP + LS S+L R N+ N + LI AF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
M+D L L I RA EI K + + K RG+ +A+ AA + ACR+ RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQ---SVEMGTIHAGDFMRRFCSNLGMNNQAV 227
I VANG KK+I KE +V + LE+ Q S I+ G+ +RRFCS L ++ + +
Sbjct: 181 IAEVANGVDKKDIR--KESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREI 238
Query: 228 KAAQEAVQKSEEFDIR 243
A EAV+K+E FDIR
Sbjct: 239 MAIPEAVEKAENFDIR 254
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 150/239 (62%), Gaps = 12/239 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + +V D+ AGD +C ECGLV+ +D +EWRTF+N+ D DP RVG NPL
Sbjct: 16 CTEHPDAPLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNDKSDKDPSRVGASENPL 75
Query: 67 LADGGLSTVIAKPNGAS-GEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L G LST+IA G S G ++NR + + DR LI AF+ I M DRL L
Sbjct: 76 LEGGDLSTMIATGVGGSEGVLDEHGKPMYRNRRTLNSSDRALINAFREIGQMGDRLNLPR 135
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
I DRAN ++K+V + K+ +GR+ DA+ +AC+YIACRQE PRT KEIC+V+ +KKEI
Sbjct: 136 MIADRANTLFKQVHEGKALKGRSNDAIASACMYIACRQEGVPRTFKEICAVSK-ISKKEI 194
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GR + I+K LET +VE+ I GDFM RFCSNL + N KAA +K+ + D+
Sbjct: 195 GRVFKLILKN--LET--NVEL--ITTGDFMSRFCSNLSLPNSVQKAATHIARKAVDLDL 247
>gi|328865397|gb|EGG13783.1| transcription initiation factor IIB [Dictyostelium fasciculatum]
Length = 331
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 147/241 (60%), Gaps = 12/241 (4%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C CK +VV D++ GD +C CG V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 27 CPVCKDPDPDVVEDYARGDLICRRCGCVIGDRIVDEHSEWRTFSNSESTGADPNRVGGPN 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL +GGLSTVI K G LS R QNRG+ + DR L+ AFK I MSD +GL
Sbjct: 87 NPLLREGGLSTVIGKGTGKDASVLS----RMQNRGALGSGDRSLLAAFKEIEKMSDHIGL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
T++D A E++++++D+K +G++ D +LAA LY+ACR + RT KE+C+++N +KK
Sbjct: 143 PQTVQDTAKELFRQMDDRKPMKGKSADGMLAASLYMACRIDGIARTFKEVCALSNNVSKK 202
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241
E+ AK Y KQ+ G + I DFM RFCSNL + N KAA + + +
Sbjct: 203 EL--AKCY--KQMREALGDVHSLHAISTDDFMTRFCSNLSLPNDVKKAADHVSRTAIDLG 258
Query: 242 I 242
I
Sbjct: 259 I 259
>gi|297818592|ref|XP_002877179.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323017|gb|EFH53438.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 153/256 (59%), Gaps = 15/256 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 58
M + C DCK+ T V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG PTNPLL G L TVI KP +S S+L R QN+ N + LI AF+ I
Sbjct: 61 VGAPTNPLLKSGNLVTVIEKPKENVSSVVSKDDISTLCRTQNQVKNHEEDLIKKAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKV---EDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
M+D L L + RA EI K + K RG+ A+ AA + +ACR+ RT+KE
Sbjct: 121 RMTDALYLNIAVNSRACEIVSKFGGHANTKLRRGKKLYAVCAASVSMACRELKLSRTLKE 180
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQ---SVEMGTIHAGDFMRRFCSNLGMNNQAV 227
I VANG K+I R ++K++ LE+ Q S I+ G+ +RRFCS L ++ + +
Sbjct: 181 IAMVANGVELKDI-RKSSMVIKRV-LESDQASVSAAQAIINTGELVRRFCSKLDISQREI 238
Query: 228 KAAQEAVQKSEEFDIR 243
A +EAV+K+E FDIR
Sbjct: 239 MAIREAVEKAENFDIR 254
>gi|145353789|ref|XP_001421184.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581421|gb|ABO99477.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 390
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 138/226 (61%), Gaps = 11/226 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN---ESGDNDPVRVGG 61
C+ C +HT +V DH++GD +C+ECGLV+ES IDE SEWRTF + + G DP R G
Sbjct: 23 ICAKCARHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDRGGADPSRTVG 82
Query: 62 PTNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
TN +L GGLST I K P+G +++L R NRG NPD+ LI AF +I +D +G
Sbjct: 83 ATNVMLTGGGLSTTIGKNPDGT----YNATLTRLHNRGMNPDKALISAFHSIGEFADAMG 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ ++D A ++Y+ V S+ G++ A+ AACLYIA RQE RT KE+C A G T
Sbjct: 139 MNRVVRDGACDLYRMVTSAHSTLGKSNVAMYAACLYIAARQEGMTRTFKEVCGAAQGTTV 198
Query: 181 KEIGRAKEYIVKQL-GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
KEIGR ++I+K GL + +M T RFC NLGM++
Sbjct: 199 KEIGRCYKFILKVCDGLNMQMNEQMITPEL--LTNRFCGNLGMSDH 242
>gi|297818608|ref|XP_002877187.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323025|gb|EFH53446.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 153/256 (59%), Gaps = 15/256 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 58
M + C DCK+ T V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG PTNPLL G L TVI KP +S S+L R QN+ N + LI AF+ I
Sbjct: 61 VGAPTNPLLKSGDLVTVIEKPKENISSVVSKDDLSTLCRAQNQLKNHEEDLIKKAFEEIQ 120
Query: 114 TMSDRLGLVATIKDRANEIYKKV---EDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
++D L L + RA EI K + K RG+ A+ AA + +ACR+ RT+KE
Sbjct: 121 RITDALYLDIVVHSRACEIVSKFGGHANTKLRRGKTLYAVCAASVSMACRELKLSRTLKE 180
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQ---SVEMGTIHAGDFMRRFCSNLGMNNQAV 227
I VANG K+I R ++K++ LE+ Q S I+ G+ +RRFCS L ++ + +
Sbjct: 181 IAMVANGVELKDI-RKSSMVIKRV-LESDQASVSAAQAIINTGELVRRFCSKLDISQREI 238
Query: 228 KAAQEAVQKSEEFDIR 243
A +EAV+K+E FDIR
Sbjct: 239 MAIREAVEKAENFDIR 254
>gi|308811701|ref|XP_003083158.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
gi|116055037|emb|CAL57433.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
Length = 395
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 141/242 (58%), Gaps = 12/242 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN---DPVRVGG 61
C C HT +V DH++GD +C+ECGLV+ES IDE SEWRTF + D DP R G
Sbjct: 26 ICPKCATHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDKNGADPSRTVG 85
Query: 62 PTNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
TN +L GGLST I K P+G +++L R NRG NPD+ LI AF +I +D +G
Sbjct: 86 ATNVMLTGGGLSTTIGKNPDGT----YNATLTRLHNRGMNPDKALIAAFHSIGEFADAMG 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ +KD A ++Y+ V S+ G++ A+ AACLYIA RQE RT KE+C A G T
Sbjct: 142 MNRVVKDGACDLYRMVTSAHSTLGKSNAAMYAACLYIAARQEGMTRTFKEVCGAAQGTTV 201
Query: 181 KEIGRAKEYIVKQL-GLETGQSVEMGTIHAGDFMRRFCSNLGM-NNQAVKAAQEAVQKSE 238
KEIGR ++I+K GL + +M T RFC NLG+ ++ +K V+ +
Sbjct: 202 KEIGRCYKFILKVCDGLNMQMNEQMITPEL--LTNRFCGNLGIGEHEYLKLCSHIVRTFK 259
Query: 239 EF 240
E
Sbjct: 260 EL 261
>gi|340376818|ref|XP_003386928.1| PREDICTED: transcription initiation factor IIB-like [Amphimedon
queenslandica]
Length = 324
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 140/238 (58%), Gaps = 11/238 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD VC ECGLV+ ID SEWRTF+NE D RVG NPL
Sbjct: 22 CNDHPDAHLIEDYHAGDMVCPECGLVVGDRVIDVGSEWRTFSNERNATDRSRVGAAENPL 81
Query: 67 LADGGLSTVIAKPNGASGEFLS-SSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVAT 124
L LS+ IA G G S S ++ G S D+ L+ AFK IA M+DRL L +
Sbjct: 82 LDGHELSSFIAPVTGRPGTNDSGKSFPKFSKSGVSAGDKSLMTAFKEIANMADRLNLPRS 141
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V D+K+ +GR DA+ AACLYIACRQED PR+ KEIC+V+ +KKEIG
Sbjct: 142 IVDRGNALFKQVNDEKTLKGRANDAVAAACLYIACRQEDVPRSFKEICAVSR-HSKKEIG 200
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I + M T+ DFM R+C+NLG+ KAA QK+ E D+
Sbjct: 201 RCFKLI------RQAANPAMNTVSTTDFMSRYCTNLGLPLPVQKAASFIAQKAVELDL 252
>gi|414872963|tpg|DAA51520.1| TPA: hypothetical protein ZEAMMB73_142786, partial [Zea mays]
Length = 98
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/98 (84%), Positives = 91/98 (92%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKK TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTF NES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFTNESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG 98
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRG 98
>gi|125585246|gb|EAZ25910.1| hypothetical protein OsJ_09753 [Oryza sativa Japonica Group]
Length = 309
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 143/245 (58%), Gaps = 7/245 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SG-DNDPVRVGGP 62
+C +C + T VV DH+ GDT+C+EC LVLE IDETSEWRTF++ SG D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
++P L+ L TV+A + + S R ++ S D L +AF+ I+ M+DRL LV
Sbjct: 71 SDPFLSHAELGTVVAPAKRQAKDTASPPHVRVDSK-SGQDSSLAVAFRAISDMADRLQLV 129
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK--PRTVKEICSVANGAT- 179
ATI+DRA E++KK+E+ K R + PRT+KE+ SV
Sbjct: 130 ATIRDRAKELFKKMEEAKLCARVRNRRRPRTRPASTSRAATRATPRTLKELASVMRDCQD 189
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGR + I + LG E G ++EMG + A D+M RF S LGM V+ AQ A Q E+
Sbjct: 190 KKEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRFGSRLGMGKPEVREAQRAAQTLED 249
Query: 240 -FDIR 243
D+R
Sbjct: 250 KLDVR 254
>gi|443732672|gb|ELU17299.1| hypothetical protein CAPTEDRAFT_167658 [Capitella teleta]
Length = 285
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 140/219 (63%), Gaps = 8/219 (3%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNG-AS 83
+CS CGLV+ ID SEWRTF+NE D RVG NPLL LST+I+ G AS
Sbjct: 2 ICSVCGLVVGDRVIDVGSEWRTFSNEKNTKDASRVGSAENPLLEGADLSTMISIGTGDAS 61
Query: 84 GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSR 143
+ + R + + ++ DR ++ AFK I MSDRL L I DRAN ++K+V + KS +
Sbjct: 62 FDDQGKPVYRNRRQMNSSDRSMVNAFKEINQMSDRLNLPRMIMDRANTLFKQVHEGKSLK 121
Query: 144 GRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVE 203
GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGRA + I+K LET SVE
Sbjct: 122 GRSNDAIASACLYIACRQEQVPRTFKEICAVSK-ISKKEIGRAFKLILKN--LET--SVE 176
Query: 204 MGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ I GDFM RFCSNLG+ + +AA +K+ + D+
Sbjct: 177 L--ITTGDFMSRFCSNLGLPSVVQRAATHIARKAVDLDL 213
>gi|355745435|gb|EHH50060.1| hypothetical protein EGM_00825 [Macaca fascicularis]
Length = 296
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 142/222 (63%), Gaps = 17/222 (7%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C +C + ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 16 LCYDC---VGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 72
Query: 85 --EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK 140
EF +S ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QK
Sbjct: 73 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQK 129
Query: 141 SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ 200
S +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET
Sbjct: 130 SLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET-- 184
Query: 201 SVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 185 SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 224
>gi|330793157|ref|XP_003284652.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
gi|325085451|gb|EGC38858.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
Length = 353
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 148/238 (62%), Gaps = 17/238 (7%)
Query: 5 FCSDCKKH-TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
+C C+ + +++ D++ GD +C ECG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 47 WCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 106
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
NPLL D LST I K G SSSL R QN+ + DR L+ AFK I M+D +
Sbjct: 107 INPLLRDSALSTTIGK-----GSRDSSSLNRLQNKSALGTGDRNLLAAFKEIGRMADHMN 161
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT KEI ++ N K
Sbjct: 162 LPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPK 220
Query: 181 KEIGRAKEYIVKQLGLETGQSV-EMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KEI R + I+K ET SV + TI DF RFCS L + + VK E V K+
Sbjct: 221 KEISRCYK-IMK----ETFSSVLNLQTISTEDFTSRFCSTLKLPIE-VKKISEHVSKT 272
>gi|444512968|gb|ELV10226.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 298
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 137/209 (65%), Gaps = 14/209 (6%)
Query: 38 IDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG--EFLSSSLGRWQ 95
ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ EF +S ++Q
Sbjct: 28 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNS---KYQ 84
Query: 96 NR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAA 153
NR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +A
Sbjct: 85 NRRTMSSSDRAMMNAFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASA 144
Query: 154 CLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM 213
CLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM
Sbjct: 145 CLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFM 197
Query: 214 RRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
RFCSNL + Q AA +K+ E D+
Sbjct: 198 SRFCSNLCLPKQVQMAATHIARKAVELDL 226
>gi|307106611|gb|EFN54856.1| hypothetical protein CHLNCDRAFT_24273 [Chlorella variabilis]
Length = 333
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 140/225 (62%), Gaps = 6/225 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGPT 63
C DC + ++ V DH++GD VC CG+V+E+H IDE SEWRTFA++ SG +DP RVGGP
Sbjct: 16 CPDCGQ-SDFVEDHASGDLVCRNCGVVVEAHVIDERSEWRTFADKVHSGGSDPNRVGGPV 74
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ-NRGSNPDRGLILAFKTIATMSDRLGLV 122
N LL+DGG+ST+I G + + G W G DR +I AF+ I + + L+
Sbjct: 75 NHLLSDGGMSTMIGGGKGVDHALVREAGGCWPAGDGVTTDRAVIAAFREIGKICAAMKLL 134
Query: 123 ATIKDRANEIYKKVEDQ-KSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
T+K +A E YK+ D KS +G++Q A+LAA +++ACR PRT KEIC+V A+ K
Sbjct: 135 DTVKKQAEEFYKQAYDNAKSIKGKSQAAVLAAIVFLACRHTGNPRTFKEICAVVPQASVK 194
Query: 182 EIGRAKEYIVKQLGLETGQ-SVEMGTIHAGDFMRRFCSNLGMNNQ 225
EIGR + +V++L LE + ++ H +MRRF S L M +
Sbjct: 195 EIGRIYKSVVRELKLEEALGNKQLEGSHPHSYMRRFMSQLSMTPK 239
>gi|417409265|gb|JAA51147.1| Putative transcription initiation factor tfiib, partial [Desmodus
rotundus]
Length = 276
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 138/214 (64%), Gaps = 14/214 (6%)
Query: 33 LESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG--EFLSSS 90
L ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ EF +S
Sbjct: 1 LGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNS- 59
Query: 91 LGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQD 148
++QNR S+ DR ++ AF+ I TM+DR+ L I DR N ++K+V +QKS +GR D
Sbjct: 60 --KYQNRRTMSSSDRAMMNAFREITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRAND 117
Query: 149 ALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIH 208
A+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I
Sbjct: 118 AIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--IT 170
Query: 209 AGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 171 TGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 204
>gi|384244800|gb|EIE18298.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 139/225 (61%), Gaps = 10/225 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPTN 64
C+DC ++ V DH+ GD VC+ CGLV ESH IDE+SEWR F ++ GD DP RVGGPTN
Sbjct: 12 CADCGS-SDFVEDHAQGDLVCTGCGLVAESHVIDESSEWRNFGDKDGDTTDPSRVGGPTN 70
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
LL + GLSTVI P GAS L+ +L R +GSNPD+ L+ AF I+ + + LGL
Sbjct: 71 HLLTN-GLSTVIGAPTKGASNATLTRNLQRAHAQGSNPDQALLRAFGHISRLCEALGLNR 129
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
KDR NE++K +++ RG+ A+ AA IACRQ PRT KE+ +V + K+I
Sbjct: 130 ACKDRGNELFKNTWEKRGIRGKGIAAVCAAVTLIACRQVGFPRTFKEMEAVIADGSIKDI 189
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVK 228
R I KQL + +EM + DF+RRFCS LG+ + +K
Sbjct: 190 KRCYRLITKQL----DEKMEM--VTPADFVRRFCSRLGLTQRDMK 228
>gi|321478592|gb|EFX89549.1| hypothetical protein DAPPUDRAFT_303055 [Daphnia pulex]
Length = 311
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 146/239 (61%), Gaps = 12/239 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D AGD +CSECGLV+ +D SEWRTF+NE+G+ DP RVGG N L
Sbjct: 10 CPSHPDAPLVDDCHAGDQICSECGLVVGDRVVDVGSEWRTFSNEAGNADPSRVGGAENTL 69
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGR-WQNRG--SNPDRGLILAFKTIATMSDRLGLVA 123
L L+T+I G + + G ++NR S+ DR L+ AFK I+ M+DR+ L
Sbjct: 70 LNGTNLTTMIGPSTSGGGTSFNETGGAVYKNRQTMSSSDRTLVNAFKEISNMADRINLPR 129
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI DRAN ++K V D K+ +G + DA +ACLYIACRQE PRT KEIC+V+ KKEI
Sbjct: 130 TIVDRANLLFKSVHDGKNLKGHSTDASASACLYIACRQEGVPRTFKEICAVSK-IGKKEI 188
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GR + I+K LET SVE+ I DFM RFCSNLG+ + A K+ E D+
Sbjct: 189 GRCFKLILK--ALET--SVEI--IKTSDFMPRFCSNLGLPAIVQRNASHIGGKAVELDV 241
>gi|268565685|ref|XP_002647378.1| C. briggsae CBR-TTB-1 protein [Caenorhabditis briggsae]
Length = 306
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 137/237 (57%), Gaps = 12/237 (5%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LTGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
+D A+ I+K V D ++ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR
Sbjct: 125 QDNASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ I++ L Q I + DFM RFC NL + N AA +++ + D+
Sbjct: 184 CFKIIIRNLETNLEQ------ITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|341901067|gb|EGT57002.1| hypothetical protein CAEBREN_14440 [Caenorhabditis brenneri]
Length = 306
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 138/237 (58%), Gaps = 12/237 (5%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
++ A+ I+K V D ++ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR
Sbjct: 125 QENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ I++ L Q I + DFM RFC NL + N AA +++ + D+
Sbjct: 184 CFKIIIRNLETNLEQ------ITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|341885208|gb|EGT41143.1| hypothetical protein CAEBREN_12544 [Caenorhabditis brenneri]
Length = 254
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 138/237 (58%), Gaps = 12/237 (5%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
++ A+ I+K V D ++ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR
Sbjct: 125 QENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ I++ L Q I + DFM RFC NL + N AA +++ + D+
Sbjct: 184 CFKIIIRNLETNLEQ------ITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|308507101|ref|XP_003115733.1| CRE-TTB-1 protein [Caenorhabditis remanei]
gi|308256268|gb|EFP00221.1| CRE-TTB-1 protein [Caenorhabditis remanei]
Length = 306
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 138/237 (58%), Gaps = 12/237 (5%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
++ A+ I+K V D ++ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR
Sbjct: 125 QENASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ I++ L Q I + DFM RFC NL + N AA +++ + D+
Sbjct: 184 CFKIIIRNLETNLEQ------ITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|17564892|ref|NP_503146.1| Protein TTB-1 [Caenorhabditis elegans]
gi|21362986|sp|O16991.2|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|351051072|emb|CCD74279.1| Protein TTB-1 [Caenorhabditis elegans]
Length = 306
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 137/237 (57%), Gaps = 12/237 (5%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
+D A+ I+K V + K+ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR
Sbjct: 125 QDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ IV+ L Q I + DFM RFC NL + N AA + + + D+
Sbjct: 184 CFKIIVRSLETNLEQ------ITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDL 234
>gi|66803286|ref|XP_635486.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
gi|74851622|sp|Q54FD6.1|TF2B_DICDI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|60463804|gb|EAL61980.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
Length = 325
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 149/243 (61%), Gaps = 16/243 (6%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
+C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMN 136
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT KEI ++ N K
Sbjct: 137 LPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPK 195
Query: 181 KEIGRAKEYIVKQLGLETGQSV-EMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KEI R + I+K ET SV + TI + DF RFCS L + N K A+ + + +
Sbjct: 196 KEISRCYK-IMK----ETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMD 250
Query: 240 FDI 242
I
Sbjct: 251 MGI 253
>gi|393912489|gb|EJD76760.1| hypothetical protein LOAG_16340 [Loa loa]
Length = 453
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 136/237 (57%), Gaps = 10/237 (4%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 153 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 212
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
LL LST IA G S S + + +N +N DR + I MS R+ L +I
Sbjct: 213 LLGSADLSTSIAVGFGGSESDYSLANAQRKNM-NNMDRQMSQGLSVIREMSARIHLPKSI 271
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
+D A +I+K V D K+ RG+N +A AACLYIACR+E PRT KEIC+ A+ +KKEIGR
Sbjct: 272 EDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRVSKKEIGR 330
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ I+K L + I + DFM RFC NLG+ + AA +K+ E D+
Sbjct: 331 CFKLIIKSL------ETSLEQITSADFMSRFCGNLGLPHSIQAAATRIAKKAVELDL 381
>gi|312087211|ref|XP_003145382.1| transcription initiation factor IIB [Loa loa]
Length = 312
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 138/244 (56%), Gaps = 16/244 (6%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 4 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 63
Query: 66 LLADGGLSTVIAKPNGASG----EF--LSSSLGRWQNRG-SNPDRGLILAFKTIATMSDR 118
LL LST IA G S +F L SL Q + +N DR + I MS R
Sbjct: 64 LLGSADLSTSIAVGFGGSESDYRQFIDLRCSLANAQRKNMNNMDRQMSQGLSVIREMSAR 123
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
+ L +I+D A +I+K V D K+ RG+N +A AACLYIACR+E PRT KEIC+ A+
Sbjct: 124 IHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRV 182
Query: 179 TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+KKEIGR + I+K L Q I + DFM RFC NLG+ + AA +K+
Sbjct: 183 SKKEIGRCFKLIIKSLETSLEQ------ITSADFMSRFCGNLGLPHSIQAAATRIAKKAV 236
Query: 239 EFDI 242
E D+
Sbjct: 237 ELDL 240
>gi|357155150|ref|XP_003577025.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 293
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 152/249 (61%), Gaps = 13/249 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF---ANESGDNDPV 57
M ++C DC T +VFD ++GDT+CSECGLVL+SH I+E + TF A++ + DP
Sbjct: 1 MESSYCKDCNLSTVIVFDRASGDTICSECGLVLDSHYIEEKANPHTFTHFASKDDNYDPF 60
Query: 58 RVGGPTNPLLADGGLSTVIAKPNGASGEF---LSSSLGRWQNRGSNPDRGLILAFKTIAT 114
VG T+ L + + + + F L S+ + ++ N AF IA
Sbjct: 61 CVGDSTSNLESKHDSTILWPEVFDNRRSFCGNLQKSVDFYSHQSDN-------AFNYIAD 113
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+DRLG+V +I+ +A IYKK ++ K R + ++ AACLYIACRQ +K RT+KEIC+V
Sbjct: 114 MADRLGIVDSIQTQAKNIYKKAKEHKLFNIRKKHSVCAACLYIACRQANKVRTIKEICTV 173
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+G +KKE+ RAK+ +V+ + G+ +E+ ++ D +RRFCS LGM QA++AA+EA
Sbjct: 174 TDGVSKKEVSRAKDLLVQHIEGHKGKCMEVNSVLPRDLVRRFCSTLGMTIQAIQAAEEAA 233
Query: 235 QKSEEFDIR 243
+ E DIR
Sbjct: 234 NRVERLDIR 242
>gi|313221394|emb|CBY32147.1| unnamed protein product [Oikopleura dioica]
gi|313236423|emb|CBY11740.1| unnamed protein product [Oikopleura dioica]
Length = 314
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 140/239 (58%), Gaps = 14/239 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C+ H + D+ AGD +C+ECGLV+ ID SEWRTF+N+SG D RVG N
Sbjct: 13 CQYHPDAHLAEDYRAGDMICTECGLVVGDRVIDVGSEWRTFSNDSGSKDRSRVGDVENRF 72
Query: 67 LADGG--LSTVIAKP-NGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
L++ G LST+IA P NGA F S+L + + DR L A++ I M+DR+
Sbjct: 73 LSNSGSDLSTMIAAPTNGAETAF--SNLSHHRRHMNAADRALSAAYREIGAMADRMNFPG 130
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
++ DRA +K+ + + +GR+ DA+ AACLYIACRQE PRT KEIC+V KKEI
Sbjct: 131 SLVDRAKVNFKEAYESRQLKGRSNDAIAAACLYIACRQEGVPRTFKEICAVCT-VPKKEI 189
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GR + I+K L + I + DFM+RFC++L +N Q A+ +KS E D+
Sbjct: 190 GRCFKLIIKTL------EKSVNVITSEDFMKRFCNSLRLNRQVEAASIHIAKKSVELDL 242
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 132/237 (55%), Gaps = 15/237 (6%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 14 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 73
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
LL LST IA G S + +N DR + I MS R+ L +I
Sbjct: 74 LLGSADLSTSIAVGFGG------SETNAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSI 127
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
+D A +I+K V D K+ RG+N +A AACLYIACR+E PRT KEIC+ A+ +KKEIGR
Sbjct: 128 EDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRVSKKEIGR 186
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ I+K L + I + DFM RFC NLG+ + AA +K+ E D+
Sbjct: 187 CFKLIIKSL------ETSLEQITSADFMSRFCGNLGLPHSIQAAATRIAKKAVELDL 237
>gi|256082789|ref|XP_002577635.1| transcription initiation factor iib [Schistosoma mansoni]
gi|353230219|emb|CCD76390.1| putative transcription initiation factor iib [Schistosoma mansoni]
Length = 308
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 139/240 (57%), Gaps = 12/240 (5%)
Query: 8 DCKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+CK H V D AGD VCS CGLV+ ID SEWRTF+N++ D RVG N
Sbjct: 5 ECKYHPYAVLIEDSHAGDMVCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENF 64
Query: 66 LLADGGLSTVIAKPNGASGEFLS---SSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
LL G LST+I+ P+ + L + R + S PDR L+ AF+ I+ M + L L
Sbjct: 65 LLDGGDLSTMISGPSPSDSRQLDEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLP 124
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+I D AN ++K+V + K+ RGR+ DA+ ACLY+ACRQE PRT KE+C+V+ +KKE
Sbjct: 125 KSISDHANLLFKQVHETKNLRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKE 183
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IG+ + I+K LET + ++ DFM RFC NL +N + A +++ ++
Sbjct: 184 IGKVFKKILKI--LETN----VQSVTVEDFMSRFCGNLNLNIAVQRVANVVARRALNLNL 237
>gi|21363041|sp|Q9NHP7.1|TF2B_DROVI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|8050578|gb|AAF71709.1| transcription factor TFIIB [Drosophila virilis]
Length = 293
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 140/238 (58%), Gaps = 34/238 (14%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ GD GGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GDA----FGGPENPL 51
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++ NR + + DR LI AFK I++M+DR+ L T
Sbjct: 52 LSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKT 110
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 111 IVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 169
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 170 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 221
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 12/237 (5%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P +P
Sbjct: 7 CPHHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNEKSGNDPSRVGAPESPY 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G ++L Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTSIAV--GFGGSDSDNTLANAQRKTMNNTDRQMTTAMNLIREMSERVHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
++ A ++K+V D RG+N +A AACLYIACRQ+ PRT KEIC+++ +KKEIGR
Sbjct: 125 QESAFRMFKEVLDSGVLRGKNIEAQAAACLYIACRQDGVPRTFKEICAISR-VSKKEIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ IV+ S + + + DFM RFC NL + N AA +++ + D+
Sbjct: 184 CFKIIVRN------SSTNLEHVTSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDL 234
>gi|421975925|gb|AFX72995.1| Transcription factor IIB [Spirometra erinaceieuropaei]
Length = 286
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG NPL LST+I+ P+ +
Sbjct: 2 VCSLCGLVVADRIIDVGSEWRTFSNDANAKDNSRVGAAENPLFEGKDLSTMISAPSRSDP 61
Query: 85 EFLSSS---LGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
L L R + S PDR LI AF+ I+ M++RL L TI DRAN ++K+V + ++
Sbjct: 62 RHLDDQGRPLYRNKRSVSGPDRALITAFREISQMAERLNLPKTISDRANLLFKQVYETRN 121
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQS 201
RGR+ DA+ ACLY+ACRQE PRT KE+C+V+ +KKEIG+ + I+ LET
Sbjct: 122 LRGRSNDAVSTACLYMACRQEKVPRTFKEVCAVSK-VSKKEIGKVFKKILNI--LETN-- 176
Query: 202 VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ + DFM RFC+NL +N + A +++ ++
Sbjct: 177 --VQAVSVDDFMSRFCANLHLNITVQQVANVVARRALNLNL 215
>gi|440491617|gb|ELQ74241.1| Transcription initiation factor TFIIB [Trachipleistophora hominis]
Length = 305
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 137/238 (57%), Gaps = 20/238 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC DC+ + D G +C+ CG ++E+ IDE +EWRTF + + NDP RVGGP N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTFDDSA--NDPSRVGGPNN 68
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLV 122
PLL L T+IA G S +L R Q + + P+R LI F I+ DR +
Sbjct: 69 PLLGTEPLDTMIAN----IGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNIS 124
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
TI DRA I+K+V+++K +G+N + ++AAC+YIACRQE PRT KE+ SV KKE
Sbjct: 125 KTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEV-SVLTAVPKKE 183
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCS--NLGMNNQ--AVKAAQEAVQK 236
IGR+ + I + ++ + D + RFCS NLG++ Q AV+ ++ ++K
Sbjct: 184 IGRSFKLIFPHIE-------KLQCVTTDDIVARFCSDLNLGIDVQKIAVQISKNVIEK 234
>gi|159466284|ref|XP_001691339.1| hypothetical protein CHLREDRAFT_115221 [Chlamydomonas reinhardtii]
gi|158279311|gb|EDP05072.1| predicted protein [Chlamydomonas reinhardtii]
Length = 312
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 118/187 (63%), Gaps = 7/187 (3%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRV 59
M FC C+ V F S GD VC +CG V ES IDE SEWRTF+++ D DP RV
Sbjct: 1 MDTEFCITCRGDDFVEF-KSEGDLVCRKCGTVKESRLIDERSEWRTFSDKDKDTTDPNRV 59
Query: 60 GGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
GGPTN LL GL+T I + G LS +L R R +NPDR L+ AFK + M D L
Sbjct: 60 GGPTNHLLE--GLTTTIGRERNDGG--LSYALNRIHARTNNPDRLLVNAFKEVGRMCDLL 115
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS-VANGA 178
G+ +KDRA EIYK+V + KS +GR+ AL A+CL+ ACRQE +PRT KEI S + N
Sbjct: 116 GVRGAVKDRACEIYKEVVEAKSLKGRSVKALAASCLFWACRQEKQPRTFKEIVSCLGNDV 175
Query: 179 TKKEIGR 185
+KKEIGR
Sbjct: 176 SKKEIGR 182
>gi|429964420|gb|ELA46418.1| hypothetical protein VCUG_02096 [Vavraia culicis 'floridensis']
Length = 305
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 20/238 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC DC+ + D G +C+ CG ++E+ IDE +EWRTF + + NDP RVG P N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTFDDSA--NDPSRVGCPNN 68
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLV 122
PLL L T+IA G S +L R Q + + P+R LI F I+ DR +
Sbjct: 69 PLLESEPLDTMIAN----IGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNIS 124
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
TI DRA I+K+V+++K +G+N + ++AAC+YIACRQE PRT KE+ SV KKE
Sbjct: 125 KTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEV-SVLTAVPKKE 183
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCS--NLGMNNQ--AVKAAQEAVQK 236
IGR+ + I + ++ + D + RFCS NLG++ Q AV+ ++ ++K
Sbjct: 184 IGRSFKLIFPHIE-------KLQCVTTDDIVARFCSDLNLGIDVQKIAVQISKNVIEK 234
>gi|209735698|gb|ACI68718.1| Transcription initiation factor IIB [Salmo salar]
Length = 224
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 113/176 (64%), Gaps = 9/176 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF NE DP RVG NPL
Sbjct: 17 CPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 77 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEI +A A
Sbjct: 134 RNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIGDIAGVA 189
>gi|19115141|ref|NP_594229.1| transcription factor TFIIB [Schizosaccharomyces pombe 972h-]
gi|21362985|sp|O13749.1|TF2B_SCHPO RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|2330704|emb|CAB11044.1| transcription factor TFIIB [Schizosaccharomyces pombe]
Length = 340
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 139/247 (56%), Gaps = 19/247 (7%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D + L
Sbjct: 79 ANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISL 134
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
I D A ++YK+V+D K+ +G++ +++AAC+YIACRQ PRT EIC++ N KK
Sbjct: 135 PKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPKK 193
Query: 182 EIGRAKEYIVKQL-----------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
EIGR + + + L L+ + ++ + A D M RFC+ L + AA
Sbjct: 194 EIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLPMSVQSAA 253
Query: 231 QEAVQKS 237
E +++
Sbjct: 254 AELARRA 260
>gi|256082791|ref|XP_002577636.1| transcription initiation factor IIB (TFIIB) [Schistosoma mansoni]
gi|353230220|emb|CCD76391.1| putative transcription initiation factor IIB (TFIIB) [Schistosoma
mansoni]
Length = 286
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG N LL G LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFLLDGGDLSTMISGPSPSDS 61
Query: 85 EFLS---SSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
L + R + S PDR L+ AF+ I+ M + L L +I D AN ++K+V + K+
Sbjct: 62 RQLDEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHETKN 121
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQS 201
RGR+ DA+ ACLY+ACRQE PRT KE+C+V+ +KKEIG+ + I+K LET
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKI--LETN-- 176
Query: 202 VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ ++ DFM RFC NL +N + A +++ ++
Sbjct: 177 --VQSVTVEDFMSRFCGNLNLNIAVQRVANVVARRALNLNL 215
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 137/242 (56%), Gaps = 14/242 (5%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK+ +V + S+GDTVC CGLV+ +D SEWRTFAN+ G ++ RVG
Sbjct: 23 ICPDCKEDPPNLVEEFSSGDTVCGSCGLVVGDRIVDTRSEWRTFANDEGGDNQSRVGSSA 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
NPLL L T+I+ +G G LS + GR + +R L+ A++ I+ M D + L
Sbjct: 83 NPLLNGSQLDTIISTQDGGHG--LSKTQGRSVVQKG--ERNLMSAYREISAMCDAIHLPK 138
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+I D A +++K+V+D K+ +GR+ +++++AC++IACRQ PRT KEIC++ N KKEI
Sbjct: 139 SISDIAKQVFKRVDDSKALKGRSNESIISACIFIACRQGKAPRTFKEICTLTN-VPKKEI 197
Query: 184 GRAKEYIVKQLGL--------ETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
GR + + K L +T S + D M RFC+ L + AA E
Sbjct: 198 GRVFKSLQKMLTDNNILDNTGKTDDSYVPSSTSPKDLMVRFCNRLSLPTSVQIAASELAS 257
Query: 236 KS 237
++
Sbjct: 258 RA 259
>gi|226482608|emb|CAX73903.1| Transcription factor IIB [Schistosoma japonicum]
Length = 286
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG N LL G LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGAGENFLLDGGDLSTMISGPSPSDS 61
Query: 85 EFLSSS---LGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
L + + R + S PDR L+ AF+ I+ M + L L +I D AN ++K+V + K+
Sbjct: 62 RQLDENGKPMYRNRRNMSAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHETKN 121
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQS 201
RGR+ DA+ ACLY+ACRQE PRT KE+C+V+ +KKEIG+ + I+K LET
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKI--LETN-- 176
Query: 202 VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ ++ DFM RFC NL +N + A +++ ++
Sbjct: 177 --VQSVTVEDFMSRFCGNLNLNITVQRVANVVARRALNLNL 215
>gi|340728624|ref|XP_003402619.1| PREDICTED: transcription initiation factor IIB-like, partial
[Bombus terrestris]
Length = 176
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDASLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DR+
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
L TI DRAN ++K+V D K+ +GR DA+ +ACLYIACRQE PRT
Sbjct: 128 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRT 175
>gi|358336173|dbj|GAA33522.2| transcription initiation factor TFIIB [Clonorchis sinensis]
Length = 284
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG NPLL+ LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGSSENPLLSGSDLSTMISGPSFSDS 61
Query: 85 EFLS---SSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
+ +L + + S+ DR L AF+ I M++ L L +I D AN ++K+V + K+
Sbjct: 62 RQVDDQGKALYKSRRHLSSADRVLTGAFREIGQMAEHLNLPKSISDHANLLFKQVYETKN 121
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQS 201
RGR+ DA+ ACLY+ACRQE PRT KE+C+V+ +KKEIG+ + I+K LET
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKI--LETN-- 176
Query: 202 VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ ++ DFM RFC NL +N + A +++ ++
Sbjct: 177 --VQSVTVEDFMSRFCGNLNLNIAVQRVANVVARRALNLNL 215
>gi|213404006|ref|XP_002172775.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
gi|212000822|gb|EEB06482.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
Length = 339
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 135/232 (58%), Gaps = 19/232 (8%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL +D SEWRTF+N + + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIVDTRSEWRTFSNSDEANGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ +G +G L+ + GR Q RG ++ L+ A+K I+ M D + L
Sbjct: 79 ANPLLNGSQLDTSISSTDG-TGAMLAKAQGRSVQVRG---EKNLLTAYKEISAMCDAISL 134
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
I D A +++K+V+D K+ +G++ +++AAC+YIACRQ PRT EIC++ N A KK
Sbjct: 135 PKVIADTAKQLFKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTNVA-KK 193
Query: 182 EIGRAKEYIVKQL-----------GLETGQSVEMGTIHAGDFMRRFCSNLGM 222
EIGR + + + L + + ++ + A D M RFC+ L +
Sbjct: 194 EIGRVYKTLQRMLTEGGALHNSVDAFKGQEYIQNSSTSAEDLMVRFCNRLQL 245
>gi|401826726|ref|XP_003887456.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
gi|337263124|gb|AEI69273.1| transcription initiation factor TFIIB [Encephalitozoon hellem]
gi|395459974|gb|AFM98475.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
Length = 312
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 127/235 (54%), Gaps = 11/235 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + ++ D+ G VC CG V+ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCVVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTMISTGGGMNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT KEI SV K+EIGR
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKREIGR 189
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
+ I L M T+ + + RFCS+L +N + K A E + + E
Sbjct: 190 CFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHEL 237
>gi|384485742|gb|EIE77922.1| hypothetical protein RO3G_02626 [Rhizopus delemar RA 99-880]
Length = 340
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 144/239 (60%), Gaps = 13/239 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK +V + ++GD VC +CGLVL ID SEWRTFAN+ GD DP RVG
Sbjct: 32 MCPDCKIVPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAA 90
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L TVI++ +G +G + L + R + +R L+ A+K I M D + L
Sbjct: 91 NPLLDGNQLDTVISRRDGGTGA--AKDLNKVHGRATAIKGERNLVQAYKEIGAMCDSISL 148
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++YK+VED+K RG++ DA++AAC++IACRQE RT +EIC++ KK
Sbjct: 149 SKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFREICALTR-VPKK 207
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
EIGR + + QL L+T ++ +++ D M RFCSNL + N KA + V++ +E
Sbjct: 208 EIGRCCKSL--QLKLQTNTTI----MNSEDLMLRFCSNLQLANYVQKAGIDLVKRVKEL 260
>gi|303389676|ref|XP_003073070.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302214|gb|ADM11710.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 312
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 127/235 (54%), Gaps = 11/235 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CTDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTIISTGGGMNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT KEI SV K+EIGR
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKREIGR 189
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
+ I L M T+ + + RFCS+L +N + K A E + + E
Sbjct: 190 CFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHEL 237
>gi|19074360|ref|NP_585866.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|51702029|sp|Q8SRP3.1|TF2B_ENCCU RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|19069002|emb|CAD25470.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|449329432|gb|AGE95704.1| transcription initiation factor TFIIB [Encephalitozoon cuniculi]
Length = 312
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 127/235 (54%), Gaps = 11/235 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT KEI SV K+EIGR
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKREIGR 189
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
+ I L M T+ + + RFCS+L +N + K A E + + E
Sbjct: 190 CFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHEL 237
>gi|429961945|gb|ELA41489.1| hypothetical protein VICG_01473 [Vittaforma corneae ATCC 50505]
Length = 312
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 124/236 (52%), Gaps = 11/236 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C+DC + ++ DH +G VC CG+VL + IDETSEWR F +S +DP RVG +N
Sbjct: 13 ICTDCGETQNIIEDHRSGYNVCGNCGVVLGNRIIDETSEWRNF-EDSHKSDPSRVGSASN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVAT 124
P L L T+I+ G + LS + RG P R L I +R + T
Sbjct: 72 PFLDSEQLDTMISAGKGMNSHTLSKIQMKNYMRG--PKRALKNGLNLIQAFCERSNICKT 129
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRA I+K VE QK +G+N + + ACLYIAC+ E+ PRT KEI SV G K+EIG
Sbjct: 130 ICDRAQHIFKMVESQKLLKGKNLEGSVGACLYIACKLENAPRTFKEI-SVITGVQKREIG 188
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
R + I K + GD + RFC++L ++ + + A QK+ E
Sbjct: 189 RCYKLIAKDVDTNNYAP-------TGDIVSRFCADLNLSLKIQRVASTISQKTYEI 237
>gi|50547791|ref|XP_501365.1| YALI0C02563p [Yarrowia lipolytica]
gi|49647232|emb|CAG81664.1| YALI0C02563p [Yarrowia lipolytica CLIB122]
Length = 324
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 132/240 (55%), Gaps = 7/240 (2%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK ++V + GD VC +CGLVL +D SEWRTF+N+ G +DP RVG
Sbjct: 12 MCPECKILPPDIVERFAEGDMVCGQCGLVLSDRVVDTRSEWRTFSNDDQGSDDPSRVGDA 71
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL L+T+I+ GA G + L R Q+R D L + I+ + D +
Sbjct: 72 MNPLLEGSQLNTIIS--FGAPGSSVGRDLNRTQSRSLQDKKDAALSAVYAKISQICDGIS 129
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A E+YK V D K RG+ DA++A ++IACR + RT +EI ++ N +K
Sbjct: 130 LPRVVSDAAKEVYKLVHDDKRLRGKTPDAIIATVIFIACRHANVQRTFQEIGALTN-VSK 188
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEI R E + + L Q+ + G M R+CS+LG+N+Q A++ V++++E
Sbjct: 189 KEIRRTLELMKRLLEGTNIQAFRSTQTNPGALMPRYCSHLGLNSQVANLAEDIVKRAKEI 248
>gi|47156969|gb|AAT12348.1| transcription initiation factor TFIIB [Antonospora locustae]
Length = 306
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 127/237 (53%), Gaps = 11/237 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + ++ D+ AG VCS CG V+ + IDE SEWR F++ + N RVG NP
Sbjct: 8 CKDCGESRNIIEDYKAGYNVCSNCGCVIGNRIIDEGSEWRNFSDANAPNLS-RVGSANNP 66
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
LL T+I+ + G LS + R RG P++ LI F I+ + DR + TI
Sbjct: 67 LLDAETYDTIISTERSSFGVNLSKTQMRSSMRG--PEQALINGFNLISALCDRANMTKTI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
DRA +K VE++K ++ ++ +AAC+YIACRQE PRT KEI SV +K+IGR
Sbjct: 125 CDRAKFNFKAVEEKKIAKSKSHKGTVAACIYIACRQEGCPRTFKEI-SVLTAVPRKDIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
A + I L SV+ D + RFCSNL + + A K A Q + DI
Sbjct: 184 AYKIIYPHLEKFVAVSVK-------DIVSRFCSNLDLGHDAEKLAVAIAQNVQRLDI 233
>gi|345571434|gb|EGX54248.1| hypothetical protein AOL_s00004g281 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 139/256 (54%), Gaps = 24/256 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CGLVL +ID SEWRTF+N+ G++DP RVG
Sbjct: 36 ICKDCKEFPPNLVEEFSSGDIVCGSCGLVLGDRTIDTRSEWRTFSNDDQGNDDPSRVGDS 95
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T I+ +G SG + L R QN+ ++ + L+ A+K I D
Sbjct: 96 ANPLLNGNQLDTGISFSDGGSGR--ARDLHRAQNKVTHDKSTKSLLAAYKEIGAFCDSTN 153
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A ++YK V+D K+ +G+ Q+ ++A C++IACR+ + PRT +EI ++ K
Sbjct: 154 LQKNVADTAKQLYKSVDDAKAFKGKPQEVIIAGCIFIACRKCNVPRTFREIFAITK-VPK 212
Query: 181 KEIGR---AKEYIVKQLGLETGQSVEMG--------------TIHAGDFMRRFCSNLGMN 223
KEIGR A E Q G T + G + A D M RFC+NLG+
Sbjct: 213 KEIGRVFKALEKFFSQQGEATVAEIVSGGGIANENAGYTSTTSTKAHDLMIRFCNNLGLT 272
Query: 224 NQAVKAAQEAVQKSEE 239
+ + +QE +++ +
Sbjct: 273 HNLIYISQELAERAAQ 288
>gi|320582171|gb|EFW96389.1| general transcription factor TFIIB [Ogataea parapolymorpha DL-1]
Length = 338
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 139/253 (54%), Gaps = 19/253 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C +CK + E+V HS GD VC+ CGLVL S ID SEWRTFAN+ + +DP RVG
Sbjct: 18 VCPECKVYPPEIVERHSEGDIVCALCGLVLSSRIIDTRSEWRTFANDDQNGDDPSRVGEA 77
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
TN L LSTVI+ G G + L R QNR D L A+ I+ + D
Sbjct: 78 TNGALDSDQLSTVISA--GVDGNRAAKELNRIQNRSVVDRKDYALQSAYSKISQLCDGYQ 135
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L ++D A E+YK V D K RG++Q+A++AA ++ CR+ D PRT EI ++ N K
Sbjct: 136 LPRVVQDGAKEVYKLVHDDKMLRGKSQEAIMAASIFFGCRKADVPRTYNEIWALTN-VPK 194
Query: 181 KEIGRAKEYIVKQL---------GLETGQSVEMGTIHAG--DFMRRFCSNLGMNNQAVKA 229
K+IG+ + I+KQ+ GL T ++ + T D + RFCS+LG++ Q +
Sbjct: 195 KDIGKVFK-IIKQIIQRKDAEQDGLITRRNNNISTTQTNPEDLVGRFCSHLGLSPQITTS 253
Query: 230 AQEAVQKSEEFDI 242
AQ + +E +
Sbjct: 254 AQHIARTLKELGV 266
>gi|337263062|gb|AEI69242.1| transcription initiation factor TFIIB [Encephalitozoon romaleae]
gi|396081581|gb|AFN83197.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
romaleae SJ-2008]
Length = 312
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 127/235 (54%), Gaps = 11/235 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + ++ D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTMISTGGGVNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT KEI SV K+EIGR
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACMYIACRQEECPRTFKEI-SVMTAVQKREIGR 189
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
+ I L M T+ + + RFCS+L ++ + K A E + + E
Sbjct: 190 CFKLISPHLE-------RMATMSTENIIARFCSDLNLSIKIQKIATEIAKAAHEL 237
>gi|302830488|ref|XP_002946810.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
gi|300267854|gb|EFJ52036.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
Length = 303
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 134/231 (58%), Gaps = 24/231 (10%)
Query: 29 CGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPTNPLLADGGLSTVIAKPNGASGEFL 87
CG V ES IDE SEWRTF+++ D DP RVGGPTN LL GL+T I + G L
Sbjct: 5 CGTVKESRLIDERSEWRTFSDKDKDTTDPNRVGGPTNHLLE--GLTTTIGRERNDGG--L 60
Query: 88 SSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
S +L R R +NPDR ++ A K + M + L + T+KDRA EIYK+V + K+ +GR+
Sbjct: 61 SYTLNRIHARTNNPDRVIMAAMKEVGRMCELLKVNGTVKDRALEIYKEVVEAKTLKGRSV 120
Query: 148 DALLAACLYIACRQEDKPRTVKEICSV-ANGATKKEIGR--------AKEYIVKQ----- 193
AL A+CL+ ACRQE + RT K+I +V N +KKEIGR K+ + KQ
Sbjct: 121 KALAASCLFWACRQEKQARTFKQIVAVLGNDVSKKEIGRCFKDLQQLKKDELHKQGASAD 180
Query: 194 -LGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIR 243
L Q+V+ H +F+R +C++L + + K A+E Q ++ D R
Sbjct: 181 ALASTMNQTVQ----HPAEFVRNYCNHLRLEFKCKKLAEEIAQNAKPQDRR 227
>gi|118780388|ref|XP_310127.3| AGAP009559-PA [Anopheles gambiae str. PEST]
gi|116131050|gb|EAA05855.3| AGAP009559-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 132/237 (55%), Gaps = 18/237 (7%)
Query: 9 CKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V D+ GD +CS+CGL++ ID +SEWRTF+++ DP RVG T+P+
Sbjct: 18 CPYHPAAALVDDYHTGDMICSDCGLIVGDRMIDPSSEWRTFSDDPSRPDPSRVGS-TDPV 76
Query: 67 LADGGLSTVI-AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L + LST I NG S L + R L+ F IATM++R+ A+I
Sbjct: 77 LQN--LSTFIQPSANGFEPPNHFSFL-----KMDTTTRKLMFGFAMIATMAERINAPASI 129
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
A I+K+ + + R+ +A+ ACLYIACRQE PRT KE+C+V + A+KKEIGR
Sbjct: 130 VSHAKTIFKQALEPAALTHRSLEAVSVACLYIACRQEGVPRTFKEMCAVCS-ASKKEIGR 188
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ I K L + I + DFM+RFCS L + ++ KAA QK+ E D+
Sbjct: 189 CFKLITKVLA------TSLDHITSEDFMQRFCSKLFLPHEVQKAATHIAQKAFEADL 239
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 136/229 (59%), Gaps = 15/229 (6%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + ++ + +GD VC CGLVL +D SEWRTFAN+ GD DP RVGGP+
Sbjct: 29 ICPDCRDPNPNIIEEFGSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGGPS 87
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
+PLL G L T+I+ +G SG ++ L R +R N +R L+ AF+ I++ D+
Sbjct: 88 DPLLEGIGQLDTIISFRDGGSG--MARELQRAASRAQNTRSERNLLSAFRDISSWCDQFS 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +EIC++ + +K
Sbjct: 146 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSK 204
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGT-----IHAG--DFMRRFCSNLGM 222
K +G+ + + + L G T I G D + R+C++L +
Sbjct: 205 KVLGQCYKALEQAFNLSPGAQNHNSTNGTQVISTGPEDLLIRYCNHLDL 253
>gi|384496466|gb|EIE86957.1| hypothetical protein RO3G_11668 [Rhizopus delemar RA 99-880]
Length = 292
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 13/239 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK +V + ++GD VC +CGLVL ID SEWRTFAN+ GD DP RVG
Sbjct: 32 MCPDCKITPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAA 90
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L TVI++ +G +G + L + R + +R L+ A+K I M D + L
Sbjct: 91 NPLLDGNQLDTVISRRDGGTGA--AKDLNKVHGRATAVKGERNLVQAYKEIGAMCDSISL 148
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++YK+VED+K RG++ DA++AAC++IACRQE RT +EIC++ KK
Sbjct: 149 SKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFREICALTR-VPKK 207
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
EIGR + + Q L+T ++ +++ D M RFCSNL + N KA + V++ ++
Sbjct: 208 EIGRCCKTL--QQKLQTNTTI----MNSEDLMLRFCSNLQLANYVQKAGIDLVRRVKDL 260
>gi|387596531|gb|EIJ94152.1| transcription initiation factor TFIIB [Nematocida parisii ERTm1]
Length = 312
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 12/233 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCKK ++ D+ G VC CG ++ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 15 CPDCKKEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ +G + L+ + + RG P+R LI I +R L TI
Sbjct: 73 FLDTEQLDTLISSGSGLASYSLAKTQMKSSLRG--PERALINGLNLITAFCERKNLSKTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
D A ++K VE++K +G+N + + AAC+YIACRQ RT KE+ S+ KKEIGR
Sbjct: 131 SDAAKYVFKTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEV-SILTAVPKKEIGR 189
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ I + ++ + D + RFCS+L ++ K A Q+++
Sbjct: 190 CYKAIFPHID-------KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQ 235
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 139/248 (56%), Gaps = 14/248 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+PL+ L T I+ +G SG L+ L R +R S +R L+ AF+ I+ D+
Sbjct: 89 DPLMEGIEQLDTTISFKDGGSG--LARELQRAASRANSSRSERNLLQAFRDISNWCDQFS 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +EIC++ + +K
Sbjct: 147 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSK 205
Query: 181 KEIGRAKEYIVKQLGLETGQS------VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
K +G+ + + + L G S GT A D + R+C++L + + +
Sbjct: 206 KVLGQCYKALEQAFNLTPGASQDRHAITPSGTTGAEDLLVRYCNHLALPPNFQPICADII 265
Query: 235 QKSEEFDI 242
K+ E I
Sbjct: 266 VKARELGI 273
>gi|357116811|ref|XP_003560170.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 332
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 34/270 (12%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE----SGDNDPVRVG 60
+C C++ T V + ++GDTVC+EC LVL+ +DE+ EWR F N D P +
Sbjct: 11 YCKGCRRVTTVTVNPASGDTVCTECSLVLKERYVDESLEWRNFLNHGPAAPADKSPSHI- 69
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEF-----------LSSSLGRWQNRGSNPDRGLILAF 109
+ L + L T +A P + E + G + P+R L AF
Sbjct: 70 --DDHFLTNLQLGTAVAGPATGNAETDVALPRKRGGGVPKKRGAAAAAAAAPNRTLAEAF 127
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKS----SRGRNQDALLAACLYIACRQEDKP 165
+ + M++RLGL +KDRA E+ +K+ED K+ + RN+ AL AACL++ACR E P
Sbjct: 128 QAMDGMAERLGLATAVKDRAKEVLRKLEDAKAFPKGGKCRNRLALYAACLHVACRAEGTP 187
Query: 166 RTVKEICSVANG---ATKKEIGRAKEYIVKQLGLE-------TGQSVEMG-TIHAGDFMR 214
T KE+ SV A K+IGR ++I L + ++EMG + AGD++
Sbjct: 188 LTFKELASVTGDSVTAGMKDIGRLVKHIRNHLEDQDQDAEGTQAATLEMGAVVRAGDYLC 247
Query: 215 RFCSNLGMNNQAVKAAQEAVQKSE-EFDIR 243
RF S LGM + + AAQEAV++ E + D+R
Sbjct: 248 RFGSLLGMGQEELHAAQEAVRRLEKDLDVR 277
>gi|387594621|gb|EIJ89645.1| transcription initiation factor TFIIB [Nematocida parisii ERTm3]
Length = 312
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 127/235 (54%), Gaps = 16/235 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCK+ ++ D+ G VC CG ++ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 15 CPDCKEEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L L T+I+ +G + S SL + Q + S P+R LI I +R L
Sbjct: 73 FLDTEQLDTLISSGSGLA----SYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLSK 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI D A ++K VE++K +G+N + + AAC+YIACRQ RT KE+ S+ KKEI
Sbjct: 129 TISDAAKYVFKTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEV-SILTAVPKKEI 187
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
GR + I + ++ + D + RFCS+L ++ K A Q+++
Sbjct: 188 GRCYKAIFPHID-------KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQ 235
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 140/248 (56%), Gaps = 14/248 (5%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 30 ICPDCRDPSPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAI 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
+PL+ L T I+ +G SG L+ L R +RGS +R L+ AF+ I++ D+
Sbjct: 89 DPLMEGVEQLDTTISFKDGGSG--LARELQRAASRGSASRSERNLLQAFRDISSWCDQFS 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L TI D A ++YK+ +++K RG+ +A++AAC++IACR+ PRT +EIC++ + +K
Sbjct: 147 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRKAHVPRTFREICNLTH-VSK 205
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAG------DFMRRFCSNLGMNNQAVKAAQEAV 234
K +G+ + + + L G S + T A D + R+C++L + + +
Sbjct: 206 KVLGQCYKQLEQAFNLTPGASADRQTSSATSSTGPEDLLVRYCNHLDLPPNVQPICSDII 265
Query: 235 QKSEEFDI 242
K+ + I
Sbjct: 266 VKARDLGI 273
>gi|440638525|gb|ELR08444.1| transcription initiation factor TFIIB [Geomyces destructans
20631-21]
Length = 349
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 142/251 (56%), Gaps = 24/251 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL +D SEWRTFAN+ G++DP RVG
Sbjct: 24 ICKECKEFPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
NPLL LST IA +G SG S L R QN+ ++ D+G L+ A+K I D +
Sbjct: 84 ANPLLNGSQLSTTIAFGDG-SGR--SRDLQRAQNKSAH-DKGTKNLLAAYKEIGAHCDAI 139
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
G+ T D A ++K V+D K+ +G++Q+AL+A C++IACRQ PRT +EI ++ +
Sbjct: 140 GIPKTGADVAKHLFKMVDDAKAFKGKSQEALIAGCIFIACRQSGVPRTFREIYALTK-VS 198
Query: 180 KKEIGRAKEYIVK-------QLGLETGQSVEMG------TIHAGDFMRRFCSNLGMNNQA 226
KK+IGR + + K + L G + + +A D + RFCS LG++ Q
Sbjct: 199 KKDIGRTFKALEKFFASDENKAALTNGSLAQTDAYQATTSTNAVDLVVRFCSQLGLHGQQ 258
Query: 227 -VKAAQEAVQK 236
VK +Q K
Sbjct: 259 FVKVSQGLADK 269
>gi|378756507|gb|EHY66531.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 308
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 127/235 (54%), Gaps = 16/235 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCK+ ++ D+ G VC CG V+ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 11 CPDCKEEENIIEDYKNGYNVCGSCGCVVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 68
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L L T+I+ +G + S SL + Q + S P+R LI I +R L
Sbjct: 69 FLDTEQLDTLISSGSGLA----SYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLSK 124
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI D A ++K VE++K +G+N + + AAC+YIACRQ RT KE+ S+ KKEI
Sbjct: 125 TISDAAKYVFKTVENKKVLKGKNLEGIGAACIYIACRQAGFVRTFKEV-SILTAVPKKEI 183
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
GR + I + ++ + D + RFCS+L ++ K A Q+++
Sbjct: 184 GRCYKAIFPHID-------KLAVVSTEDIVARFCSDLTLSIDIQKVALTISQRAQ 231
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 132/234 (56%), Gaps = 12/234 (5%)
Query: 17 FDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI 76
+D+ + D +C+ECG+V++ D SEWRTF+ E+G+ DP ++G N LL L+T+
Sbjct: 25 YDYRSSDQICTECGVVVKDRVDDVGSEWRTFSYEAGNVDPSQIGEEENTLLDGSNLTTIF 84
Query: 77 AKPNGASGEFLSSS---LGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
G ++ S LGR + R S+ D+ L+ A+ I+ M+ + L T+ DRAN
Sbjct: 85 GPSTSGGGSLINESGEALGRKKKRQTMSSSDQTLVSAYNEISNMAVNINLPRTVVDRANC 144
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
++K V D K +G + A+ + CLYIACRQE PRT KEIC++ KKE+GR + I
Sbjct: 145 LFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALTK-IDKKELGRCYKLIP 203
Query: 192 KQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ---KSEEFDI 242
K LET V + I DF+ RFCSNLGM V ++ K+ E D+
Sbjct: 204 K--ALETSVDV-IPRITTSDFIPRFCSNLGMQLTKVIFLNVSLHIGLKAVELDV 254
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 12/247 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
+PL+ DG L T I+ +G SG ++ S +R L+ AF+ I+ D+ L
Sbjct: 89 DPLM-DGMEQLDTTISFRDGGSGLARELQRAASRSSASRSERNLLQAFRDISNWCDQFSL 147
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
TI D A ++YK+ +++K RG+ DA++AAC++IACRQ PRT +EIC++ + +KK
Sbjct: 148 PKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTH-VSKK 206
Query: 182 EIGRAKEYIVKQLGLETG------QSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
+G+ + + + L G S GT D + R+C++L + + ++
Sbjct: 207 VLGQCYKALEQAFNLTPGASQDRHSSTPSGTTGPEDLLIRYCNHLDLPPNVQPICADVIK 266
Query: 236 KSEEFDI 242
K+ E I
Sbjct: 267 KARELGI 273
>gi|406859255|gb|EKD12323.1| transcription factor TFIIB [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 352
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 21/235 (8%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CGLVL +D SEWRTFAN+ G++DP RVG
Sbjct: 24 ICKDCKEVPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L+T I+ +G S S L R QN+ SN + L+ A+K I D +
Sbjct: 84 ANPLLNGSQLTTSISFQDGNS---RSRDLMRTQNKSSNDKSTKSLLAAYKEIGAHCDAVN 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L ++ D A ++KKVED K+ +G++Q+A++A C++IACRQ PRT +EI ++ +K
Sbjct: 141 LSKSVSDCAKLLFKKVEDAKAFKGKSQEAIIAGCIFIACRQCAVPRTFREIYALTK-VSK 199
Query: 181 KEIGRAKEYIVKQLGLETG--QSVEMG-----------TIHAGDFMRRFCSNLGM 222
K+IGR + + K G Q V G + +A D R+CS LG+
Sbjct: 200 KDIGRTFKALEKFFAQNNGGAQKVVAGVSAEDPYQATTSTNAQDLCVRYCSQLGL 254
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 138/248 (55%), Gaps = 18/248 (7%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ + ++ + +GD VC CGL+L +D SEWRTFAN+ GD DP RVG +
Sbjct: 32 CPECRDPNPNIIEEFGSGDLVCGTCGLILGDRVVDTRSEWRTFANDEGD-DPSRVGAAID 90
Query: 65 PLLADG-GLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
PL+ + TVI+ +G SG ++ L R +R N +R ++ AF+ I++ D+ L
Sbjct: 91 PLMEGMEQMDTVISYKDGGSG--VARELQRAASRSQNTRSERNMLQAFRDISSWCDQFSL 148
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
TI D A ++YK+ +++K RG++ DA++AAC++IACRQ PRT +E+C++ + KK
Sbjct: 149 PKTISDIAKQLYKRADEEKLLRGKSLDAVIAACIFIACRQAHVPRTFREMCTLTH-VPKK 207
Query: 182 EIGRAKEYIVKQLGLETGQS----------VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+G+ + + K L S T + D + R+C++LG+ + A
Sbjct: 208 TLGQCYKTLEKAFNLAAAGSNNTTQNSRPDPAATTTNPQDLLARYCNHLGLPHLVQSTAS 267
Query: 232 EAVQKSEE 239
E + +E
Sbjct: 268 EIISIGKE 275
>gi|321470096|gb|EFX81073.1| hypothetical protein DAPPUDRAFT_299541 [Daphnia pulex]
Length = 321
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 11/245 (4%)
Query: 5 FCSDCKKHTEVV--FDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
C H ++ +D+ + D +C ECGLV+E D SEWRTF+ E+G+ DP ++G
Sbjct: 11 ICCPSHPHYPLIAHYDYRSSDQICPECGLVVEDRVDDVGSEWRTFSYEAGNVDPSQIGEE 70
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSS---LGRWQNRG--SNPDRGLILAFKTIATMSD 117
N LL L+T+ G L+ S +GR +NR S+ D+ L+ A+ I+ M+
Sbjct: 71 ENTLLDGSNLTTMFGPSMSGGGSLLNESGGAVGRKKNRQTMSSSDQTLVSAYNEISNMAV 130
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG 177
+ L T+ DRAN ++K V D K +G + A+ + CLYIACRQE PRT KEIC++
Sbjct: 131 NINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALTK- 189
Query: 178 ATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KKE+GR + I K LET V + I DF+ NL +N + A K+
Sbjct: 190 IDKKELGRCYKLIPK--ALETSVDV-IPRITTSDFIPLQNLNLELNAMVQREALHIGLKA 246
Query: 238 EEFDI 242
E D+
Sbjct: 247 VELDV 251
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 140/250 (56%), Gaps = 16/250 (6%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPAIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADG-GLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLG 120
+PL+ L T I+ +G SG ++ L R +R S +R L+ AF+ IA+ D+
Sbjct: 89 DPLMEGMEQLDTTISFRDGGSG--IARELQRAASRSQASRSERNLLQAFRDIASWCDQFS 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L TI D A ++YK+ +++K RG+ DA++AAC++IACRQ PRT +EIC++ + +K
Sbjct: 147 LPKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTH-VSK 205
Query: 181 KEIGRAKEYIVKQLGLETGQSV----EMGTIHAG----DFMRRFCSNLGMNNQAVKAAQE 232
K +G+ + + + L G S + T A D + R+C++L + +
Sbjct: 206 KVLGQCYKALEQAFNLTPGASATTDRHLTTPAAARGPEDLLVRYCNHLDLPPNVQPICSD 265
Query: 233 AVQKSEEFDI 242
+ ++ E I
Sbjct: 266 IIIQARELGI 275
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 136/232 (58%), Gaps = 13/232 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK + +V + +GD VC CGLVL ID SEWRTFAN+ GD DP RVG +
Sbjct: 29 ICPECKDPNPNIVEEFGSGDLVCGNCGLVLGDRVIDTRSEWRTFANDEGD-DPSRVGAAS 87
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
+PLL L TVI+ +G SG ++ L R +R N +R L+ AF+ I+ D+
Sbjct: 88 DPLLEGIEQLDTVISFRDGGSG--IARELQRAASRSQNNRSERNLLTAFRDISNWCDQFS 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L TI D A ++YK+ +++K RG+ +A++AAC++IACR+ PRT +EIC++ +K
Sbjct: 146 LPKTISDIAKQLYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFREICNLTR-VSK 204
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMG---TIHAGDFMRRFCSNLGM--NNQAV 227
K +G+ + + + L L +S+ + T + R+C++L + N QA+
Sbjct: 205 KMLGQCYKALEQSLNLSGPESMPLANTPTTGPEKLLVRYCNHLDLPANVQAI 256
>gi|296420282|ref|XP_002839704.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635898|emb|CAZ83895.1| unnamed protein product [Tuber melanosporum]
Length = 346
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 132/255 (51%), Gaps = 28/255 (10%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DC++ +V + S+GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 19 MCPDCREVPANIVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFSNDDQAGD-DPSRVGD 77
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
NP L L T I+ G +G L R QN+ G +GL+ A+K I D +
Sbjct: 78 AANPFLNGAQLETTISYTPGGAGR----ELHRAQNKTAGDKSTKGLLAAYKEIGAFCDSI 133
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
+ + D A +++K V+D K+ +G+ Q+A++A C++IACRQ PRT +EI ++
Sbjct: 134 NIQKVVSDAAKQLFKIVDDHKAFKGKPQEAIIAGCIFIACRQCQVPRTFREIFALTK-VP 192
Query: 180 KKEIGRA---------------KEYIVKQLGL--ETGQSVEMGTIHAGDFMRRFCSNLGM 222
KKEIGR + I K G+ ++ Q + A + M R+C+NL +
Sbjct: 193 KKEIGRVFKALEKFFAAQDSKKMDEITKSGGIVDDSQQYKTTSSTKATELMIRYCNNLNL 252
Query: 223 NNQAVKAAQEAVQKS 237
AQE ++
Sbjct: 253 TQNCTTIAQELADRA 267
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 142/243 (58%), Gaps = 14/243 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK + ++V + ++GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPECKDPNPQIVEEFASGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
+PL+ DG L TVI+ +G SG +S L R +R S +R L+ AF+ I+ D+
Sbjct: 90 DPLM-DGMEQLDTVISFRDGGSG--ISRELQRAASRAQSSRTERNLLTAFRDISNWCDQF 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PR+ K+ICS+ + +
Sbjct: 147 SLPKTISDIAKQLYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFKDICSLTH-VS 205
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KK +G+ + ++++ + G + G F+ R+C+ L + ++ + + E
Sbjct: 206 KKMLGQCYK-VLERAFTQVGAAPSSG---PEGFLVRYCNYLDLPPNVQGICRDVIVAARE 261
Query: 240 FDI 242
I
Sbjct: 262 HGI 264
>gi|385301292|gb|EIF45494.1| transcription initiation factor iib [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 19/252 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + E++ HS GD VC+ CGLVL H ID SEWRTF N ++GD DP RVG
Sbjct: 30 CPECKVYPPELIERHSDGDIVCALCGLVLSDHLIDSRSEWRTFNNDDQNGD-DPSRVGEA 88
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLG 120
+ +L LSTVI+ N G ++ L R Q + D L A+ I+ M D
Sbjct: 89 SASVLDSDQLSTVIS--NSQEGGRVARELNRTQGKSVADKKDHALQTAYAKISQMCDGYQ 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L ++D A E+YK V D K RG++Q++++AA +++ CR+ PR+ KEI ++ N +
Sbjct: 147 LPKVVQDGAKEVYKLVYDDKMLRGKSQESIMAAAIFLGCRKASVPRSFKEIWALTN-VPR 205
Query: 181 KEIGRAKEYIVKQL--------GLETGQSVEMGTIHAG--DFMRRFCSNLGMNNQAVKAA 230
KEIG+ + I + + GL T Q+ + T D + RFCS+LG+ Q +A
Sbjct: 206 KEIGKTFKVINQIIRKKNAEHGGLITYQNDNIATTQTNPEDLVGRFCSHLGLTPQITSSA 265
Query: 231 QEAVQKSEEFDI 242
+ +K E +
Sbjct: 266 RHIARKLREVGV 277
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 131/229 (57%), Gaps = 15/229 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ ++V + +GD VC+ CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 29 ICPDCRDPVPKIVEEFGSGDLVCATCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAQ 87
Query: 64 NPLLADGG-LSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRL 119
+PLL + L+T I +G +G ++ L R +RG N +R + AF+ I+ M D
Sbjct: 88 DPLLDEQDQLATAIGFRDGNTG--VARELQRAASRGMNGARSERSIQTAFREISNMCDSF 145
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L +I D A ++YK+ +++K R ++ DA++AAC++IACRQ PRT +EIC +
Sbjct: 146 SLPKSISDIAKQLYKRADEEKLLRAKSLDAVIAACIFIACRQAQVPRTFREICELTR-VP 204
Query: 180 KKEIGRAKEYIVKQLGLETGQ--SVEMGTIHAG----DFMRRFCSNLGM 222
KK IG+ + + + L G S I AG D + R+C++LG+
Sbjct: 205 KKIIGQCYKTLEQAFNLAPGANGSTNDRGIVAGTGPEDLLVRYCNHLGL 253
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 98 GSNPDRGLILAF---KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAAC 154
GS DRG++ + + LGL I+ A++I + +Q + GR+ ++ A
Sbjct: 227 GSTNDRGIVAGTGPEDLLVRYCNHLGLPPNIQSYASDIIVEARNQGIAAGRSPVSIAGAA 286
Query: 155 LYIACRQEDKPRTVKEICSVA---NGATK---KEIGRAKEYIVKQLGLETGQS 201
++ C D+ ++VK+I VA G K K + +E +VKQ ++ G++
Sbjct: 287 IFFTCHLLDQTKSVKDITGVAGVSEGTLKLVYKLLYADREKLVKQEWIDAGKA 339
>gi|356513820|ref|XP_003525607.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-2-like [Glycine max]
Length = 347
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 140/269 (52%), Gaps = 33/269 (12%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI-DETSEWRTF-------------- 47
+ +CSDCK +T +V+DH+AGDT+CSECGLVLES SI +E + R +
Sbjct: 5 EEYCSDCKSYTPLVYDHNAGDTICSECGLVLESRSIEEEIPKLRLYGDKHEDDDDGGGDH 64
Query: 48 -ANESGDNDPVRVGGPTNPLL--ADGGLSTVIAKPNGASGEFLSSSLGRWQNRG---SNP 101
+ V P N LL + GLST++ P+ R RG SN
Sbjct: 65 EDEDEHQEQGFSVSDPFNTLLLTSGAGLSTLVTHPSLYDNNNSDMVKTRKNQRGIKNSNR 124
Query: 102 DR--------GLILAFKTIATMSDRLGLVATIKDRANEIYKKVED--QKSSRGRNQDALL 151
D L+ A T+ M++ LGL +IK+ A E+YKK ED R R+ A +
Sbjct: 125 DAKRKLKTDCDLVAALLTMEQMANNLGLAWSIKNHAKELYKKAEDRRVFRGRRRHSRASM 184
Query: 152 AACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD 211
ACLY+AC++E PRTVKEI SV+ GA +K K V + + G++ + + D
Sbjct: 185 VACLYLACQEEGFPRTVKEIQSVSGGAKEKNKHIYKAIGVFKKHFQVGRNYDKTQV--LD 242
Query: 212 FMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
R C++LG++N +KA +E +QK+ EF
Sbjct: 243 IGERLCTHLGLDNHVIKAVREVLQKALEF 271
>gi|269862513|ref|XP_002650868.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065496|gb|EED43190.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 311
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 125/237 (52%), Gaps = 15/237 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI D+A I+K VE +K +G+N + + AC+YIAC+ E PRT KEI SV K+EI
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKREI 187
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
G+ + I K++ G + D + RFCS+L +N + A+ +K ++
Sbjct: 188 GKCYKLISKEID-------TTGIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDI 237
>gi|269862954|ref|XP_002651040.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065224|gb|EED43015.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 277
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 125/237 (52%), Gaps = 15/237 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI D+A I+K VE +K +G+N + + AC+YIAC+ E PRT KEI SV K+EI
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKREI 187
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
G+ + I K++ G + D + RFCS+L +N + A+ +K ++
Sbjct: 188 GKCYKLISKEID-------TTGIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDI 237
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 132/233 (56%), Gaps = 12/233 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + +V + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 32 ICPDCRDPNPHIVEEFGSGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 90
Query: 64 NPLLADG-GLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
+PLL L TVI+ +G SG +++ S +R L+ AF+ I D+ L
Sbjct: 91 DPLLEGMEQLDTVISFRDGGSGIARELQRAASRSQSSRSERNLLTAFRDIGGWCDQFSLP 150
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +EIC++ N +KK
Sbjct: 151 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTN-VSKKT 209
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAG------DFMRRFCSNLGM--NNQAV 227
+G+ + + + L G +IH + + R+C++L + N Q++
Sbjct: 210 LGQCYKALEQAFNLTPGSGSGGASIHPSPSTGPENLLVRYCNHLDLPANVQSI 262
>gi|269862581|ref|XP_002650895.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065455|gb|EED43163.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 252
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 125/237 (52%), Gaps = 15/237 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI D+A I+K VE +K +G+N + + AC+YIAC+ E PRT KEI SV K+EI
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKREI 187
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
G+ + I K++ G + D + RFCS+L +N + A+ +K ++
Sbjct: 188 GKCYKLISKEID-------TTGIMATADIVGRFCSDLNLNAKIQNTARYIAKKVQDI 237
>gi|408396047|gb|EKJ75215.1| hypothetical protein FPSE_04606 [Fusarium pseudograminearum CS3096]
Length = 349
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 28/239 (11%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C +C + + D S+GDTVCS+CGLV+ S ID SEWRTFAN+ G +DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + + LS R QN + +GL+LA+K I ++ + + +
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALS----RTQNNTTQDKAQKGLMLAYKEIVSLCEAINM 137
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +KK
Sbjct: 138 GQNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKK 196
Query: 182 EIGRAKEYIVKQL---------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
E+GR + KQL GL T + E ++ A D R+ S LG+ NQ
Sbjct: 197 EVGR----VFKQLQSFLQKLQETEGDATGLNTVTNYENTSVGAEDLCGRYVSQLGLLNQ 251
>gi|46107428|ref|XP_380773.1| hypothetical protein FG00597.1 [Gibberella zeae PH-1]
Length = 348
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 28/239 (11%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C +C + + D S+GDTVCS+CGLV+ S ID SEWRTFAN+ G +DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + + LS R QN + +GL+LA+K I ++ + + +
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALS----RTQNNTTQDKAQKGLMLAYKEIVSLCEAINM 137
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +KK
Sbjct: 138 GQNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKK 196
Query: 182 EIGRAKEYIVKQL---------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
E+GR + KQL GL T + E ++ A D R+ S LG+ NQ
Sbjct: 197 EVGR----VFKQLQSFLQKLQETEGDATGLNTVTNYENTSVGAEDLCGRYVSQLGLLNQ 251
>gi|452839736|gb|EME41675.1| hypothetical protein DOTSEDRAFT_135117 [Dothistroma septosporum
NZE10]
Length = 358
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 136/246 (55%), Gaps = 27/246 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DC+ E+ DH++GD +C+ECGLVL+ ID +SEWRTF+N+ G++DP RVG
Sbjct: 33 CKDCRTDPPELYEDHASGDLICAECGLVLQERGIDTSSEWRTFSNDDQGNDDPSRVGDGP 92
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRLG 120
N LL L+T IA +G S L R QN+ SN D+G L++A+K I + D
Sbjct: 93 NALLNGAQLNTSIAFGDG----IRSKELHRAQNK-SNLDKGNKTLLVAYKQIGALCDNWD 147
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + + D A +YK ++ + +G++Q+AL+A C+++ACR+ + PR+ +E+ + +K
Sbjct: 148 LPSMVSDTAKHLYKDADESRVFKGKSQEALIAGCVFLACRRNNVPRSFREVMELTK-VSK 206
Query: 181 KEIGRA----KEYIVKQLGLETGQSVEMGTIHAGDFMR------------RFCSNLGMNN 224
KEIGR + +++ + GT+ D + R+C+ L M+
Sbjct: 207 KEIGRTFKMLETFLMGKEKERQANGTNTGTVVFNDAYKGSTTSDPSEMCARWCNMLSMSQ 266
Query: 225 QAVKAA 230
QA A
Sbjct: 267 QASNVA 272
>gi|402469405|gb|EJW04304.1| hypothetical protein EDEG_01428 [Edhazardia aedis USNM 41457]
Length = 305
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 125/239 (52%), Gaps = 19/239 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D+ G VC+ECG + IDE SEWR F + DP RVGGP NP
Sbjct: 11 CPNCGEDKNIIEDYKNGYNVCAECGCTIGPRIIDEGSEWRNFGDSQTGGDPSRVGGPNNP 70
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
L L T+I SG+ SL R Q + + P+R LI F + DR G+
Sbjct: 71 FLETDVLDTII------SGK---DSLARTQMKSTMRGPERALINGFNLLTNYCDRNGIAM 121
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
I+DRA I K V ++K ++G+N +A+ AACL++AC+ PRT KEI S+ K E+
Sbjct: 122 VIQDRAKTILKTVIEKKLAKGKNAEAVAAACLHLACKHAKCPRTFKEI-SLMCQVPKDEV 180
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
G+ + I K VE+ ++ D + RFCS+L + + K A Q+ ++ I
Sbjct: 181 GKCYKLIEKHF-----DKVEI--LNVEDIIERFCSDLSLGIKEQKTALRISQRLKKHGI 232
>gi|340521242|gb|EGR51477.1| transcription factor [Trichoderma reesei QM6a]
Length = 363
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 134/241 (55%), Gaps = 29/241 (12%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +++ + S+GD VC+ CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 37 MCPDCKEYPPDLIEEFSSGDMVCNSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGP 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
+ + L+T +A + + LS R QN + +GL+ A+K I + + +
Sbjct: 97 QDEFVEGQHLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVALCETIH 152
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ A + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +K
Sbjct: 153 MGANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSK 211
Query: 181 KEIGRAKEYIVKQL----------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224
KE+GR + KQL GL T + E ++ A D R+ S LG N
Sbjct: 212 KEVGR----VFKQLQNFLQKIQDTEGEGATGLNTVTNYENTSVGAEDLCGRYVSQLGFKN 267
Query: 225 Q 225
Q
Sbjct: 268 Q 268
>gi|398404368|ref|XP_003853650.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
gi|339473533|gb|EGP88626.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
Length = 361
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 133/248 (53%), Gaps = 26/248 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DC++ E+ DH++GD +C CGLVL+ SID +SEWRTF+N+ G++DP RVG
Sbjct: 32 ICRDCREDPPELREDHASGDLICENCGLVLQQRSIDTSSEWRTFSNDDQGNDDPSRVGDG 91
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
N LL L+T IA +G S L R QN+ ++ ++ L+ A+K I + D
Sbjct: 92 PNALLNGAQLNTNIAFGDGG---MRSKELHRAQNKANHDKSNKLLLQAYKQIGALCDGWA 148
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L T+ + A IYK ++ + +G++Q+AL+A C++IACR+ + PRT +E + + +K
Sbjct: 149 LPYTVSESAKHIYKDADESRLFKGKSQEALIAGCVFIACRRNNVPRTFREAMELTS-VSK 207
Query: 181 KEIGRAKEYIV-----KQLGLETGQSVEM-------------GTIHAGDFMRRFCSNLGM 222
KEIGR + + K G G T D +RFCS LG+
Sbjct: 208 KEIGRTFKLLENFLMNKDKGKNAGSDAAANGAVVYNEAYKGSATADPADLCQRFCSMLGL 267
Query: 223 NNQAVKAA 230
+ +A A
Sbjct: 268 DQRATNVA 275
>gi|358379756|gb|EHK17435.1| hypothetical protein TRIVIDRAFT_182873 [Trichoderma virens Gv29-8]
Length = 356
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 134/241 (55%), Gaps = 31/241 (12%)
Query: 6 CSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DCK++ ++ + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 32 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 91
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRLG 120
+ + L+T +A + + LS R QN +N D+ GL+ A+K I + + +
Sbjct: 92 DEFVEGQHLATTVAFSESKAHKALS----RTQN-NANADKAQKGLMQAYKEIVALCETIN 146
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ A + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +K
Sbjct: 147 MGANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSK 205
Query: 181 KEIGRAKEYIVKQL----------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224
KE+GR + KQL GL T + E ++ A D R+ S LG N
Sbjct: 206 KEVGR----VFKQLQNFLQKIQVTEGEGATGLNTVTNYENTSVGAEDLCGRYVSQLGFKN 261
Query: 225 Q 225
Q
Sbjct: 262 Q 262
>gi|149244370|ref|XP_001526728.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449122|gb|EDK43378.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
Length = 349
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 136/253 (53%), Gaps = 20/253 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 27 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRMVDTRSEWRTFSNDDQNGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL LST+I+ P+ L R Q + D L A+ I+ M D
Sbjct: 87 NPLLDTEDLSTMISYVPDNTKA---GRELTRAQQKSLVDKKDNALAAAYVKISQMCDGYQ 143
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L ++D A E+YK V ++KS RG++Q++++AA ++I CR+ R KEI ++ N K
Sbjct: 144 LPKIVQDGAKEVYKMVYEEKSLRGKSQESIMAASIFIGCRKAKVARLFKEIWALTN-VPK 202
Query: 181 KEIG---RAKEYIVKQ--------LGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
KEIG R + I+++ + ++++ A D +RRFCS+LG+N Q A
Sbjct: 203 KEIGKVFRIMDRIIQENHAANPQTAAYYSHENIQTTQTSAEDLIRRFCSHLGLNTQVTNA 262
Query: 230 AQEAVQKSEEFDI 242
A+ ++++E +
Sbjct: 263 AEHIARRAKEVGV 275
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 10/246 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADG-GLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
+PL+ L T I+ +G SG ++ S +R L+ AF+ IA D+ L
Sbjct: 89 DPLMEGMEQLDTTISFRDGGSGIARELQRAASRSAASRSERNLLQAFRDIAGWCDQFSLP 148
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +EIC++ + +KK
Sbjct: 149 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSKKV 207
Query: 183 IGRAKEYIVKQLGLETGQS------VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK 236
+G+ + + + L G S GT A D + R+C++L + + + K
Sbjct: 208 LGQCYKALEQAFNLTPGASQDRHLNAPSGTTGAEDLLVRYCNHLDLPPNVQPICGDIIVK 267
Query: 237 SEEFDI 242
+ E I
Sbjct: 268 ARELGI 273
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 92 GRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALL 151
G Q+R N G A + + L L ++ +I K + + GR+ ++
Sbjct: 224 GASQDRHLNAPSGTTGAEDLLVRYCNHLDLPPNVQPICGDIIVKARELGIADGRSPVSIA 283
Query: 152 AACLYIACRQEDKPRTVKEICSVA--NGATKKEIGRA----KEYIVKQLGLETGQS 201
+Y C DKP++VKEI +VA + T K + R KE +VK+ + G++
Sbjct: 284 GGAIYFTCCLLDKPKSVKEISTVAGVSEGTIKLVYRLYYAEKEKLVKEEWIRDGKA 339
>gi|448519650|ref|XP_003868125.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis Co 90-125]
gi|380352464|emb|CCG22690.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis]
Length = 353
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 137/257 (53%), Gaps = 28/257 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 90
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATMS 116
NPLL LST+I+ P+ +S GR NR + D L A+ I+ M
Sbjct: 91 NPLLDTEDLSTMISYVPD-------NSKAGRELNRAQSKSLVDKKDNALAAAYAKISQMC 143
Query: 117 DRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176
D L ++D A E+YK V D+K RG++Q++++AA ++I CR+ RT KEI ++ N
Sbjct: 144 DGYQLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFKEIWALTN 203
Query: 177 GATKKEIG---RAKEYIVKQLGLETGQS--------VEMGTIHAGDFMRRFCSNLGMNNQ 225
KKEIG R I+++ QS ++ A D +RRFCS+LG+++Q
Sbjct: 204 -VPKKEIGKVFRIMNNIIREKNEANPQSAAYYSQDNIQTTQTSAEDLIRRFCSHLGLSSQ 262
Query: 226 AVKAAQEAVQKSEEFDI 242
A+ ++S++ +
Sbjct: 263 VTNGAEYIARRSKDVGV 279
>gi|358400578|gb|EHK49904.1| hypothetical protein TRIATDRAFT_297298 [Trichoderma atroviride IMI
206040]
Length = 348
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 132/240 (55%), Gaps = 29/240 (12%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DCK++ ++ + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 24 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + LS R QN + +GL+ A+K I + + + +
Sbjct: 84 DEFVEGQHLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVALCETIHM 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
A + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +KK
Sbjct: 140 GANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKK 198
Query: 182 EIGRAKEYIVKQL----------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
E+GR + KQL GL T + E ++ A D R+ S LG NQ
Sbjct: 199 EVGR----VFKQLQNFLQKIQDNEGESGSGLNTVTNYENTSVGAEDLCGRYVSQLGFKNQ 254
>gi|328858041|gb|EGG07155.1| hypothetical protein MELLADRAFT_43314 [Melampsora larici-populina
98AG31]
Length = 345
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 136/251 (54%), Gaps = 22/251 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ + ++V + S+GD VC CGLV+ +D SEWRTFA + GD DP RVGGP+NP
Sbjct: 29 CPDCRTY-KLVEEFSSGDLVCGTCGLVIGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSNP 86
Query: 66 LL-ADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGLV 122
LL T+I+ +G +G ++ L R R + ++ + AF +I M D + L
Sbjct: 87 LLNGVETFETIISFKDGNTG--VARDLNRAATRAATKSGEKSVAAAFLSIQDMCDTISLP 144
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
T+ D A +++++ +++K RG+ DA++AAC++IACRQ R+ KE+ ++ KK+
Sbjct: 145 RTVTDIAKQLFRRADEEKLLRGKQIDAVIAACIFIACRQSKVGRSFKEVVALTR-VPKKQ 203
Query: 183 IGRAKEYIVK-----------QLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
IG+ + + L +TG+S G A D M RFCS+LG+ A+
Sbjct: 204 IGQCFKALSAAFETSAVGGGGALNTDTGESSGAG---AEDLMARFCSHLGLPYYVQSGAK 260
Query: 232 EAVQKSEEFDI 242
E I
Sbjct: 261 RIAITQREIGI 271
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 8/201 (3%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C++ T ++ + +GD VC CGLVL ID SEWRTFAN+ GD DP RVG T
Sbjct: 19 ICPECREATPDIREEFGSGDLVCGACGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAT 77
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLG 120
+PLL L TVI+ +G SG ++ L R R GS +R ++ AF+ I+T D+
Sbjct: 78 DPLLEGIEQLDTVISFRDGGSG--VARELQRAATRAQGSRSERNILTAFRDISTRCDQFA 135
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L TI D A ++YK+V D+ +G+ Q+A+ AAC++IACRQ PRT +E C + + +K
Sbjct: 136 LPKTISDIAKQLYKRVHDEGVLKGKPQEAITAACIFIACRQAHVPRTFREFCDLTH-VSK 194
Query: 181 KEIGRAKEYIVKQLGLETGQS 201
K +G I L G S
Sbjct: 195 KLLGFCCRTISLTFNLAPGAS 215
>gi|344231613|gb|EGV63495.1| hypothetical protein CANTEDRAFT_114798 [Candida tenuis ATCC 10573]
Length = 344
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 17/251 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK + +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 24 CPDCKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGL 121
NPLL LST+I+ + + L R Q++ D L AF I+ M D L
Sbjct: 84 NPLLDHENLSTMIS--HSPDSLRIGRELSRAQSKSLVDKKDNALAAAFAKISQMCDGYQL 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
++D A E+YK V +++ RG++Q++++AA ++I CR+ PRT KEI ++ N +
Sbjct: 142 PKIVQDAAKEVYKLVYEERPLRGKSQESIMAASIFIGCRKAKVPRTFKEIWALTN-VPRT 200
Query: 182 EIG----------RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
EIG R K I +++ A D +RR+CS+LG+ Q AA+
Sbjct: 201 EIGKVFKIMDRIIREKNAINPAAFSLVEDNIQTTQTSAEDLIRRYCSHLGLGTQITNAAE 260
Query: 232 EAVQKSEEFDI 242
++ +E +
Sbjct: 261 YIARRCKELGV 271
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 131/236 (55%), Gaps = 21/236 (8%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPT 63
C DCK+ +V + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDHGGDDPSRVGGPQ 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + LS R QN + +GL+ A+K I ++ + + +
Sbjct: 83 DEFVEGEQLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVSLCEAINM 138
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +KK
Sbjct: 139 GQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKK 197
Query: 182 EIGRAKEYIVKQL------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
E+GR + + K L GL T + E ++ A D R+ S LG NQ
Sbjct: 198 EVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKNQ 253
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS---VANGATK- 180
I + ++ +K D + GR+ ++ AAC+Y+AC +PR+ I V++G K
Sbjct: 256 ISKISRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGTVKT 315
Query: 181 --KEIGRAKEYIVKQLGLETGQSVE 203
K + A+E ++K+ LE G S++
Sbjct: 316 AYKHLFAAREQLIKKEWLEDGGSMD 340
>gi|380487909|emb|CCF37735.1| transcription factor TFIIB [Colletotrichum higginsianum]
Length = 351
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 121/237 (51%), Gaps = 22/237 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 27 MCPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T IA +G S L R QN+ N + L+ A+K I D +
Sbjct: 87 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 142
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A I+K D +G+ Q+A++A C++IACRQ RT +EI V + +K
Sbjct: 143 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 201
Query: 181 KEIGRA---KEYIVKQLGLETGQSV----------EMGTIHAGDFMRRFCSNLGMNN 224
KEIGR E ++++ E + + A D RFCSNL N
Sbjct: 202 KEIGRVFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFRN 258
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 130/226 (57%), Gaps = 12/226 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPECRDPNPNIVEQFGSGDLVCGNCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLLADG-GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLG 120
+PL+ L TVI+ +G SG ++ L R +R N +R ++ AF+ I + D+
Sbjct: 90 DPLMEGMEQLDTVISFRDGGSG--IARELQRAASRSQNSRSERNIMTAFRDIGSWCDQFS 147
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +EIC + + +K
Sbjct: 148 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICDLTH-VSK 206
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAG----DFMRRFCSNLGM 222
K +G+ + + + L G S + + + + R+C++L +
Sbjct: 207 KILGQCYKALEQAFNLTPGASAAHASNNPATGPENLLVRYCNHLDL 252
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 23/236 (9%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK +V +S+GD VC CG+VL ID SEWRTFANE GD DP RVG +
Sbjct: 31 ICPECKDPVPNIVEQYSSGDLVCGSCGMVLGDRIIDTRSEWRTFANEEGD-DPSRVGAAS 89
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRW--QNRGSNPDRGLILAFKTIATMSDRL 119
+PL+ DG L TVI+ +G SG L+ L R + + + ++ FK I+ D +
Sbjct: 90 DPLM-DGMEQLDTVISFQDGGSG--LARELQRASAKTQAFKDGKTMMEGFKKISQFCDSI 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L I D A ++YK+VE+ + +G+ DA++AAC++IACRQ PRT +EIC++
Sbjct: 147 SLPKVISDTAKQLYKRVEEDRILKGKRMDAIVAACIFIACRQGHVPRTFREICNITK-VN 205
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGT----IH---------AGDFMRRFCSNLGM 222
KK +G+ + + L T IH A + + RFC++LG+
Sbjct: 206 KKALGQCYKAMEAYFRLNVSGGATSSTNRVDIHLAGSGSKASAEELIPRFCNHLGL 261
>gi|241948569|ref|XP_002417007.1| general transcription factor TFIIB, putative; transcription factor
E, putative; transcription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223640345|emb|CAX44595.1| general transcription factor TFIIB, putative [Candida dubliniensis
CD36]
Length = 344
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 136/256 (53%), Gaps = 27/256 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATMS 116
NPLL LST+I+ P+ S+ GR NR + D L A+ I+ M
Sbjct: 83 NPLLDTEDLSTMISYAPD-------STKAGRELNRAQSKSLVDKKDNALAAAYIKISQMC 135
Query: 117 DRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176
D L + D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ KEI ++ N
Sbjct: 136 DGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN 195
Query: 177 GATKKEIGRAKEYIVKQL---------GLETGQ-SVEMGTIHAGDFMRRFCSNLGMNNQA 226
+KEIG+ + + K + GQ S++ A D +RRFCS+LG+N Q
Sbjct: 196 -VPRKEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQV 254
Query: 227 VKAAQEAVQKSEEFDI 242
A+ ++ +E +
Sbjct: 255 TNGAEYIARRCKEVGV 270
>gi|310797049|gb|EFQ32510.1| transcription factor TFIIB [Glomerella graminicola M1.001]
Length = 351
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 121/237 (51%), Gaps = 22/237 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 27 MCPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T IA +G S L R QN+ N + L+ A+K I D +
Sbjct: 87 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 142
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A I+K D +G+ Q+A++A C++IACRQ RT +EI V + +K
Sbjct: 143 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 201
Query: 181 KEIGRA---KEYIVKQLGLETGQSV----------EMGTIHAGDFMRRFCSNLGMNN 224
KEIGR E ++++ E + + A D RFCSNL N
Sbjct: 202 KEIGRVFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFRN 258
>gi|255730671|ref|XP_002550260.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240132217|gb|EER31775.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 344
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 135/256 (52%), Gaps = 27/256 (10%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATMS 116
NPLL LST+I+ P+ ++ +GR NR + D L A+ I+ M
Sbjct: 83 NPLLDTEDLSTMISYVPD-------NTKVGRELNRAQSKSLVDKKDNALAAAYVKISQMC 135
Query: 117 DRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176
D L + D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ KEI ++ N
Sbjct: 136 DGYQLPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN 195
Query: 177 GATKKEIGRAKEYIVKQL----------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQA 226
+KEIG+ + + K + T S+ A D +RRFCS+LG+N Q
Sbjct: 196 -VPRKEIGKVFKIMDKIIREKNAANPNAAYYTQDSISTTQTSAEDLIRRFCSHLGVNAQV 254
Query: 227 VKAAQEAVQKSEEFDI 242
A+ ++ +E +
Sbjct: 255 TNGAEYIARRCKEVGV 270
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 124/229 (54%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ VC ECGLV+E+ +ID EWR F N S N RVG PT + D GL+T I K
Sbjct: 40 GELVCEECGLVIETRNIDRGPEWRAF-NHSERNSKSRVGAPTTKTMHDKGLTTQIDWKDK 98
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G LSS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 99 DAYGRSLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 158
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
+Y++ ++ RGR+ + + +CLY+ACRQE PR+++E+ V+ KKEIGR YI
Sbjct: 159 VVYRRALNEDLIRGRSIEGVSTSCLYVACRQESIPRSLEEVADVSR-VEKKEIGRTYRYI 217
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++L S+EM + +++ RFCS L + + A+E + + E
Sbjct: 218 AQEL------SLEMKPVDPKEYVPRFCSALDSSEEVQAKAREIIDTTAE 260
>gi|354544056|emb|CCE40778.1| hypothetical protein CPAR2_108140 [Candida parapsilosis]
Length = 353
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 136/254 (53%), Gaps = 22/254 (8%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 90
Query: 64 NPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
NPLL LST+I+ N +G L R Q++ D L A+ I+ M D
Sbjct: 91 NPLLDTEDLSTMISYVPDNFKAGR----ELNRAQSKSLVDKKDNALAAAYAKISQMCDGY 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L ++D A E+YK V D+K RG++Q++++AA ++I CR+ RT KEI ++ N
Sbjct: 147 QLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFKEIWALTN-VP 205
Query: 180 KKEIG---RAKEYIVKQLGLETGQS--------VEMGTIHAGDFMRRFCSNLGMNNQAVK 228
KKEIG R I+++ QS ++ A D +RRFCS+LG+++Q
Sbjct: 206 KKEIGKVFRIMNNIIREKNEANPQSAAYYSQDNIQTTQTSAEDLIRRFCSHLGLSSQVTN 265
Query: 229 AAQEAVQKSEEFDI 242
A+ ++S++ +
Sbjct: 266 GAEYIARRSKDVGV 279
>gi|328771004|gb|EGF81045.1| hypothetical protein BATDEDRAFT_35027 [Batrachochytrium
dendrobatidis JAM81]
Length = 335
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 13/230 (5%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVGG 61
C DCK +V D SAGD +C CGL+L + ID SEWRTF+N S DN DP RVG
Sbjct: 31 ICRDCKDAVPNIVEDFSAGDLICGNCGLILGNRIIDTRSEWRTFSN-SDDNSGDPSRVGA 89
Query: 62 PTNPLLADGGL--STVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
++P+L G ST+I +G +G + G + L+ AFK I M +R+
Sbjct: 90 ASDPILGSKGTIDSTIIGVRDGGTGRSRELHRAHLKVIGQKGEVALLQAFKVIQAMGERI 149
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L + D A +++KK +D++ + + +A++AACLYIACR+ RT +EIC+++ +
Sbjct: 150 SLSKIVIDSAKQLFKKADDERLLKSKPTEAIIAACLYIACREHSVTRTFREICALSK-VS 208
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
KKEIGR Y Q +E V+ ++ A ++ RF S++ + KA
Sbjct: 209 KKEIGRC--YKALQPNME--HPVQQISLDA--YISRFSSSIDIKADVRKA 252
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 131/236 (55%), Gaps = 21/236 (8%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPT 63
C DCK+ +V + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDHGGDDPSRVGGPQ 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
+ + L+T +A + + LS R QN S +GL+ A+K I ++ + + +
Sbjct: 83 DEFVEGEQLATTVAFSESKAHKALS----RTQNNASQDKAQKGLMQAYKEIVSLCEAINM 138
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +KK
Sbjct: 139 GQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKK 197
Query: 182 EIGRAKEYIVKQL------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
E+GR + + K L GL T + E ++ A D R+ S LG +Q
Sbjct: 198 EVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFKSQ 253
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS---VANGATK- 180
I + ++ +K D + GR+ ++ AAC+Y+AC +PR+ I V++G K
Sbjct: 256 ISKISRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGTVKT 315
Query: 181 --KEIGRAKEYIVKQLGLETGQSVE 203
K + A+E ++K+ LE G S++
Sbjct: 316 AYKHLFAAREQLIKKEWLEDGGSMD 340
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 129/245 (52%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++V D G+ VC++CGLV+E ID EWR F N S + RVG PT
Sbjct: 31 CPECSS-TDIVKDGDRGELVCNDCGLVVEEDHIDPGPEWRAF-NHSERQEKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTQIDWKDQDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
MS LG+ +I++ A+ IY++ D RGR+ + + A LY ACR+E PR+++EI V
Sbjct: 149 MSSALGVPRSIREVASVIYRRALDDDLIRGRSIEGVATAALYAACRKEGIPRSLEEISEV 208
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A++ +
Sbjct: 209 SR-VERKEIGRTYRYISQELGL------EMEPVDPQKYVPRFCSELELSEEVQSKAKDII 261
Query: 235 QKSEE 239
+ + E
Sbjct: 262 ETTAE 266
>gi|407927206|gb|EKG20106.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 355
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 26/247 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DCK+ ++ + S+GDTVC CGLVL + +D SEWRTF+N ++GD DP RVG
Sbjct: 30 ICPDCKEQPPNLIEEFSSGDTVCGSCGLVLSARVVDTRSEWRTFSNDDQNGD-DPSRVGD 88
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRL 119
NPLL L+T I+ +GA S L R QN+ ++ L+ A+K I DR
Sbjct: 89 AANPLLNGSQLATNISYTDGAK----SRELNRAQNKSGTDKSNKSLMQAYKLIGQWCDRW 144
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L T+ D A +YK +D K +G+ ++++A CL++ACRQ + R+ +E+ + G +
Sbjct: 145 LLPHTVSDTAKHMYKMTDDSKGFKGKALESIVAGCLFLACRQAQQGRSFRELHEL-TGVS 203
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGT---IHAGDFMR------------RFCSNLGMNN 224
KKEIGR + + K + +G + AGD + R+C+ LG++N
Sbjct: 204 KKEIGRIFKSLDKFFNAQNRSGNILGNGGLVMAGDAYKSKEATSPPELCARYCNQLGLDN 263
Query: 225 QAVKAAQ 231
+ AQ
Sbjct: 264 RVQMLAQ 270
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 132/248 (53%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CGLV+E ID EWR F +E D RVG P
Sbjct: 30 CPECG-SPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+ EI +
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR +I ++LGL ++ D++ RFC+ LG++ + K A E +
Sbjct: 208 SR-VDRKEIGRTYRFITRELGL------KLMPTSPADYIPRFCAALGLSGEVQKKAIEII 260
Query: 235 QKSEEFDI 242
+K+EE ++
Sbjct: 261 KKAEEREL 268
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
LGL ++ +A EI KK E+++ + GR + AA LY+A + RT +E+ VA G
Sbjct: 246 LGLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVA-GV 304
Query: 179 TKKEIGRAKEYIVKQLGLE 197
T+ I + + ++LG+E
Sbjct: 305 TEVTIRNRYKELAEKLGIE 323
>gi|443900112|dbj|GAC77439.1| transcription initiation factor TFIIB [Pseudozyma antarctica T-34]
Length = 375
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 139/261 (53%), Gaps = 28/261 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRL 119
NPLL DG L + I +G SG S L R NR + DR ++ AF+ I D +
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGSGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L T+ D A + Y++VE++K RG+ DA++AA +Y+AC+ PRT EICS+ + +
Sbjct: 162 HLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VS 220
Query: 180 KKEIGRAKEYIVKQLGLE------------------TGQSVEMGTIHAGDFMRRFCSNLG 221
KK IG+ + + + GL T + +G A D + R+C++LG
Sbjct: 221 KKHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVGRYCNHLG 280
Query: 222 MNNQAVKAAQEAVQKSEEFDI 242
+ + ++ ++ + E +
Sbjct: 281 LEMRVTRSTEDITARVRELGV 301
>gi|429860053|gb|ELA34805.1| transcription initiation protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 555
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 121/237 (51%), Gaps = 22/237 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 231 MCPDCKEYPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 290
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L T IA +G S L R QN+ N + L+ A+K I D +
Sbjct: 291 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 346
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A I+K D +G+ Q+A++A C++IACRQ RT +EI V + +K
Sbjct: 347 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 405
Query: 181 KEIGRA---KEYIVKQLGLETGQSV----------EMGTIHAGDFMRRFCSNLGMNN 224
KEIGR E ++++ E + + A D RFCSNL N
Sbjct: 406 KEIGRVFKQLESFLQKIKEENPRGAGSLSNLDGYKASASTSAEDLCTRFCSNLNFRN 462
>gi|260941562|ref|XP_002614947.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851370|gb|EEQ40834.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 349
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 138/254 (54%), Gaps = 23/254 (9%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRL 119
NPLL LST+I+ N +G L R Q++ D L A+ I+ M D
Sbjct: 85 NPLLDTEDLSTMISYVPENVKAGR----ELNRAQSKSLVDKKDNALSAAYAKISQMCDGY 140
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L ++D A E+YK V D++ RG++Q++++AA ++I CR+ RT KEI ++ N
Sbjct: 141 QLPKIVQDGAKEVYKLVHDERLLRGKSQESIMAAAIFIGCRKAKVARTFKEIWALTN-VP 199
Query: 180 KKEIGRAKEYIVKQLGLETGQ-----------SVEMGTIHAGDFMRRFCSNLGMNNQAVK 228
KKEIG+ + I+K++ E + S + A D +RRFCS+LG++N+
Sbjct: 200 KKEIGKVFK-IIKRVIQEKNETNPGAYSLIKDSEQTTQTSAEDLIRRFCSHLGLSNEVTN 258
Query: 229 AAQEAVQKSEEFDI 242
AA+ ++ +E I
Sbjct: 259 AAEYIARRCKESGI 272
>gi|238879169|gb|EEQ42807.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 344
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 134/252 (53%), Gaps = 19/252 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 83 NPLLDTEDLSTMISYAPDSTKA---GRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQ 139
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ KEI ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 181 KEIGRAKEYIVKQL---------GLETGQ-SVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
KEIG+ + + K + GQ S++ A D +RRFCS+LG+N Q A
Sbjct: 199 KEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQVTNGA 258
Query: 231 QEAVQKSEEFDI 242
+ ++ +E +
Sbjct: 259 EYIARRCKEVGV 270
>gi|68468997|ref|XP_721557.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|68469546|ref|XP_721286.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443195|gb|EAL02479.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443477|gb|EAL02759.1| likely transcription factor TFIIB [Candida albicans SC5314]
Length = 344
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 134/252 (53%), Gaps = 19/252 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 83 NPLLDTEDLSTMISYAPDSTKA---GRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQ 139
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A E+YK V D+K RG++Q++++AA ++I CR+ + R+ KEI ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 181 KEIGRAKEYIVKQL---------GLETGQ-SVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
KEIG+ + + K + GQ S++ A D +RRFCS+LG+N Q A
Sbjct: 199 KEIGKVFKIMDKIIREKNAANPNAAYYGQDSIQTTQTSAEDLIRRFCSHLGVNTQVTNGA 258
Query: 231 QEAVQKSEEFDI 242
+ ++ +E +
Sbjct: 259 EYIARRCKEVGV 270
>gi|388857243|emb|CCF49256.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Ustilago hordei]
Length = 375
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 139/261 (53%), Gaps = 28/261 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRL 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D +
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L T+ D A + Y++VE++K RG+ DA++AA +Y+AC+ PRT EICS+ + +
Sbjct: 162 HLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VS 220
Query: 180 KKEIGRAKEYIVKQLGLE------------------TGQSVEMGTIHAGDFMRRFCSNLG 221
KK IG+ + + + GL T + +G A D + R+C++LG
Sbjct: 221 KKHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVGRYCNHLG 280
Query: 222 MNNQAVKAAQEAVQKSEEFDI 242
+ + ++ ++ + E I
Sbjct: 281 LEMRVTRSTEDITARVRELGI 301
>gi|340960457|gb|EGS21638.1| hypothetical protein CTHT_0035020 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 19/231 (8%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ ++ + S+GD VC CGLV+ ID SEWRTF+N+ G++DP RVG
Sbjct: 28 ICKDCKEFPPNLIEEFSSGDMVCGSCGLVVGDRIIDTRSEWRTFSNDDQGNDDPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGL 121
N ++ L T IA G + LS + Q++ S + L+ A++ I +++D +
Sbjct: 88 PNLMIDGDQLQTTIAYGEGKNARNLSHLQNKVNQDKAS---KALLQAYRDIQSLTDSINT 144
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ + + A IYK VED K+ +G++Q+A++A C++IACRQ PRT +EI + +KK
Sbjct: 145 GSQVANAAKHIYKLVEDNKALKGKSQEAIIAGCIFIACRQMGVPRTFREIYGLTK-VSKK 203
Query: 182 EIGRAKEYI------------VKQLGLETGQSVEMGTIHAGDFMRRFCSNL 220
EIGR + + V Q + T Q G+ A + R+CSNL
Sbjct: 204 EIGRVFKQLEAFLQKMGGEEQVAQTSIFTAQYQAKGSTSAPELCARYCSNL 254
>gi|71021421|ref|XP_760941.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
gi|46101016|gb|EAK86249.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
Length = 375
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 139/261 (53%), Gaps = 28/261 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRL 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D +
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L T+ D A + Y++VE++K RG+ DA++AA +Y+AC+ PRT EICS+ + +
Sbjct: 162 HLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VS 220
Query: 180 KKEIGRAKEYIVKQLGLE------------------TGQSVEMGTIHAGDFMRRFCSNLG 221
KK IG+ + + + GL T + +G A D + R+C++LG
Sbjct: 221 KKHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVGRYCNHLG 280
Query: 222 MNNQAVKAAQEAVQKSEEFDI 242
+ + ++ ++ + E I
Sbjct: 281 LEMRITRSTEDITARVRELGI 301
>gi|300708774|ref|XP_002996560.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
gi|239605871|gb|EEQ82889.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
Length = 333
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 11/234 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC + ++ D+ G VC CG V+ + IDE+SEWR+F+ +S DP R G +NP
Sbjct: 35 CTDCGETQNIIEDYRNGYNVCGRCGCVVGNRIIDESSEWRSFS-DSNKADPCRTGSVSNP 93
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G S L + RG P+R L I +R + T+
Sbjct: 94 FLDTEQLDTMISSVPGTSSYNLQKIQLKTAMRG--PERSLKHGINLITAFCERANITKTV 151
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
DRA I+K V+D+K +G+N + ++ AC+YIACR E+ PRT KE+ S+ KKEIG
Sbjct: 152 IDRACLIFKIVDDKKLLKGKNIEGVVGACIYIACRLENCPRTFKEV-SLITSVQKKEIG- 209
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
K L + + + D + RFCS+L +N + + A K +E
Sbjct: 210 ------KSFKLISPHVENLTVVSTKDIVARFCSDLRLNIKIQRLAFAISAKVQE 257
>gi|343426216|emb|CBQ69747.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Sporisorium reilianum SRZ2]
Length = 370
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 139/261 (53%), Gaps = 28/261 (10%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 41 ICRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 99
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRL 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D +
Sbjct: 100 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRHMLDAFEDIQRKCDSI 156
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L T+ D A + Y++VE++K RG+ DA++AA +Y+AC+ PRT EICS+ + +
Sbjct: 157 HLPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VS 215
Query: 180 KKEIGRAKEYIVKQLGLE------------------TGQSVEMGTIHAGDFMRRFCSNLG 221
KK IG+ + + + GL T + +G A D + R+C++LG
Sbjct: 216 KKHIGQCFKEMQQAFGLNATGTGSVDGSRASANNSGTSTPIGIGPTGAADLVGRYCNHLG 275
Query: 222 MNNQAVKAAQEAVQKSEEFDI 242
+ + ++ ++ + E I
Sbjct: 276 LEMRITRSTEDITARVRELGI 296
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 132/252 (52%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++ D+ G+ +C +CGLV+E ID EWR F +E + RVG
Sbjct: 29 TLEVCPECG-SPRLIRDYRRGEFICQDCGLVIEETYIDAGPEWRAFDSEQKEKRS-RVGA 86
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N G+ +S L +WQ R + +R L A
Sbjct: 87 PVTYTIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALS 146
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL ++++ A IY+K D+ RGR+ + ++AA LY ACRQ PRT+ E
Sbjct: 147 ELDRMASALGLPKSVRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTLDE 206
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I + + +KEIGR +I ++LGL ++ D++ RFC+ LG++ K A
Sbjct: 207 IATYSR-VDRKEIGRTYRFIARELGL------KLMPTSPADYVPRFCAALGLSGDVQKKA 259
Query: 231 QEAVQKSEEFDI 242
E ++K+EE ++
Sbjct: 260 IEIIKKAEEKEL 271
>gi|367022010|ref|XP_003660290.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
gi|347007557|gb|AEO55045.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 142/254 (55%), Gaps = 27/254 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGP 62
C DCK+ +V ++S+GD VC+ CGLVL+ ID SEWRTF+ +++G++DP RVG
Sbjct: 29 ICPDCKEEPPNLVEEYSSGDMVCASCGLVLD-RIIDTRSEWRTFSGDDNGNDDPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N ++ L T IA + +L QN+ N D+G L+ A++ I ++D +
Sbjct: 88 PNLMIDGDQLQTSIAFDGKGA-----KNLAHLQNK-VNQDKGTKALLQAYRDIQALTDSI 141
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
A + + A I+K V+D K+ +G++Q+A++A C++IACRQ + PRT +E+ + +
Sbjct: 142 NAGAQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTK-VS 200
Query: 180 KKEIGRA---KEYIVKQLGLE---------TGQSVEMGTIHAGDFMRRFCSNLGMNN--Q 225
KKEIGR E ++++G E T Q G+ A + R+CSNLG N +
Sbjct: 201 KKEIGRVFKQLEAFLQKMGGEDKVAKATGYTQQYQAKGSTTADELCIRYCSNLGFRNPVR 260
Query: 226 AVKAAQEAVQKSEE 239
A+ +KS E
Sbjct: 261 VENVARRLAEKSSE 274
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 135/244 (55%), Gaps = 8/244 (3%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + ++ + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPDCRDPNPNIIEEFGSGDLVCGSCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLL-ADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
+PL+ L TVI+ +G SG +++ S +R ++ AF+ I++ D+ L
Sbjct: 90 DPLMEGIEQLDTVISFRDGGSGIARELQRAASRSQSSRSERNILTAFRDISSWCDQFSLP 149
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
TI D A ++YK+ +++K RG+ DA++AAC++IACRQ PRT +EIC++ + +KK
Sbjct: 150 KTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICTLTH-VSKKV 208
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAG----DFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+G+ + + + L G + + + + R+C++L + + + +
Sbjct: 209 LGQCYKALEQAFNLSPGATHNSNSSSTPTGPENLLVRYCNHLDLPANVQTICSDIIVTAR 268
Query: 239 EFDI 242
++ I
Sbjct: 269 KYGI 272
>gi|453083300|gb|EMF11346.1| cyclin-like protein [Mycosphaerella populorum SO2202]
Length = 358
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 131/241 (54%), Gaps = 24/241 (9%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPTNPLL 67
C+ ++ DH++GD +C CGLVL+ SID +SEWRTF+N+ G++DP RVG N LL
Sbjct: 37 CEDPPDLREDHASGDLLCGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDGPNALL 96
Query: 68 ADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRLGLVAT 124
L+T IA +G + L R QN+ +N D+G L+ A+K I + D L +T
Sbjct: 97 NGAQLNTNIAFGDGG---MKAKDLHRAQNK-ANLDKGNKSLLQAYKQIGALCDGWQLPST 152
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
+ D A +YK E+ + +G+ QDAL+A C+++ACR+ PR+ +E+ + TKKEIG
Sbjct: 153 VSDTAKHLYKDAEESRIFKGKGQDALIAGCVFLACRRNGVPRSFREVMDLTK-VTKKEIG 211
Query: 185 RAKEYI---VKQLGLETGQS------------VEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
+ + + ++Q + S T D +R+CS L M+ ++
Sbjct: 212 KTYKMLEDFIRQRDKQKSASKTAVAPDVYNNAYTTTTADPADLCQRYCSMLDMDQRSTNV 271
Query: 230 A 230
A
Sbjct: 272 A 272
>gi|448086815|ref|XP_004196195.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359377617|emb|CCE86000.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 140/262 (53%), Gaps = 39/262 (14%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATMS 116
NPLL LST+I+ P+ ++ +GR NR + D L A+ I+ M
Sbjct: 89 NPLLDSEDLSTMISYVPD-------NTKVGRELNRAQSKSLVDKKDNALAAAYSKISQMC 141
Query: 117 DRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176
D L ++D A E+YK V +++ RG++Q++++AA ++I CR+ R+ KEI ++ N
Sbjct: 142 DGYQLPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWALTN 201
Query: 177 GATKKEIGRAKEYIVK----------------QLGLETGQSVEMGTIHAGDFMRRFCSNL 220
+KEIG+ + +++ Q ++T Q+ A D +RRFCS+L
Sbjct: 202 -VPRKEIGKVFKIMIRIVREKNESDPNAHSLIQDNMQTSQT------SAEDLIRRFCSHL 254
Query: 221 GMNNQAVKAAQEAVQKSEEFDI 242
G+N Q AA+ ++ ++ +
Sbjct: 255 GLNTQITNAAEYIARRCKDVGV 276
>gi|367045134|ref|XP_003652947.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
gi|347000209|gb|AEO66611.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
Length = 349
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 134/237 (56%), Gaps = 24/237 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC+ CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 26 MCPDCKESPPNLVEETSSGDVVCASCGLVLGERIIDSRSEWRTFSNDDQGNDDPSRVGEG 85
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N ++ L T IA +G + + +L QN+ N D+G L+ A++ I +++D +
Sbjct: 86 PNLMIDGDQLQTAIAY-DGKNAK----NLAHLQNK-INQDKGSKALMAAYRDIQSLTDSI 139
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
A + + A I+K VED K+ +G++Q+A++A C++IACRQ PRT +EI + +
Sbjct: 140 NAGAQVANAAKHIFKMVEDNKALKGKSQEAIIAGCIFIACRQTGVPRTFREIYGLTK-VS 198
Query: 180 KKEIGRA---KEYIVKQLGLETG-------QSVEM--GTIHAGDFMRRFCSNLGMNN 224
KKEIGR E ++++G E V M G+ A + R+CSNL N
Sbjct: 199 KKEIGRVFKQLEVFLQKMGGEDAIAQASLFNQVYMAKGSTSAVELCARYCSNLHFRN 255
>gi|156062044|ref|XP_001596944.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980]
gi|154696474|gb|EDN96212.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 350
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 139/253 (54%), Gaps = 25/253 (9%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N+ G++DP RVG
Sbjct: 22 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRLG 120
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 82 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ + D A ++K V+D K+ +G++Q+A++A C++IACRQ D PRT +EI ++ +K
Sbjct: 139 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCDVPRTFREIYALTK-VSK 197
Query: 181 KEIGRAKEYIVKQLGLETG---------------QSVEMGT-IHAGDFMRRFCSNLGMNN 224
K+IGR + + K ++ +S + T +A D R+CS LG+ +
Sbjct: 198 KDIGRTFKALEKFFASDSSAKKARAEAVGAPASTESYQTTTSTNAKDLCTRYCSQLGLKS 257
Query: 225 QA-VKAAQEAVQK 236
Q VK +Q +K
Sbjct: 258 QQFVKVSQGLAEK 270
>gi|302307436|ref|NP_984103.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|299789000|gb|AAS51927.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|374107319|gb|AEY96227.1| FADR007Cp [Ashbya gossypii FDAG1]
Length = 354
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 18/251 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G+ + L+ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQVQGSDVK-LTRELNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK ++++ +G++Q++++A+ + + CR+ + RT KEI S+ N K
Sbjct: 146 LPRIVKDCAKEAYKLCFEERALKGKSQESIMASVILVGCRRAEVGRTFKEILSLTN-VRK 204
Query: 181 KEIGRAKEYIVKQLGLETGQS---------VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
KEIG+ I+K++ E S + G +A F+ RFCS+LG++ Q AA+
Sbjct: 205 KEIGKTFN-IIKKILREKNDSGFANVDTANISTGQTNAETFIPRFCSHLGLSVQVANAAE 263
Query: 232 EAVQKSEEFDI 242
+ +++ ++
Sbjct: 264 YIAKHAKDINV 274
>gi|449297000|gb|EMC93019.1| hypothetical protein BAUCODRAFT_270595 [Baudoinia compniacensis
UAMH 10762]
Length = 360
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 139/256 (54%), Gaps = 31/256 (12%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DC+ E+ DH++GD +C+ CGLVL +ID SEWRTF+N+ G++DP RVG
Sbjct: 32 MCKDCRDDPPELYEDHASGDLMCANCGLVLAQRTIDMGSEWRTFSNDDQGNDDPSRVGEG 91
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRL 119
N LL L T IA +G S L R QN+ SN D+ GL+ A+K I + D
Sbjct: 92 PNTLLNGAQLETGIAFGDG----IRSRELHRAQNK-SNMDKTNKGLLQAYKQIGALCDGW 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L +++ D A +YK ++ + RG++Q+AL+A C+++ACR+ + PR+ +E+ + +
Sbjct: 147 QLPSSVSDTAKHLYKDADESRLFRGKSQEALIAGCVFLACRRNNVPRSFREVMELTK-VS 205
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMG--TIHAGDFMR-----------------RFCSNL 220
KKEIGR + +++Q ++ + + G T+ G + RFC+ L
Sbjct: 206 KKEIGRTFK-LLEQFYMKNTKLAKNGVSTVAGGQLVSNEAYTGSQNSNPAELCDRFCNAL 264
Query: 221 GMNNQAVKAAQEAVQK 236
GM+ A + Q+
Sbjct: 265 GMSRTASNVSIALAQR 280
>gi|190344839|gb|EDK36597.2| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 142/251 (56%), Gaps = 19/251 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + DP RVG +
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLADGGLSTVIAK-PN-GASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRL 119
NPLL LST+I+ PN G +G LS R Q++ + D L+ A+ I+ M +
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLS----RAQSKSAIDRKDSSLVAAYSKISHMCEGY 140
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L ++D + EIYK V D+K RG++Q++++AA + + CR+ + R+ EI ++ N
Sbjct: 141 QLPRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRSFLEIAALTN-VP 199
Query: 180 KKEIGRAKEYIVKQLGLETGQSVE--------MGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
KKE+GR + +++ L + + + + + A D +RRFCS+LG++ Q AA+
Sbjct: 200 KKELGRVFKTMIQLLQEKHSNNPDVMHMTQQPVSSTSAEDLIRRFCSHLGLSTQISNAAE 259
Query: 232 EAVQKSEEFDI 242
++ ++ I
Sbjct: 260 YIARRCKDEQI 270
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 137/250 (54%), Gaps = 24/250 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + + D + G+ VC +CGLVLE + ID+ +EWR F+ E GD R G P
Sbjct: 12 CGDCGSRS-LTRDETRGEVVCEDCGLVLEDNVIDQGAEWRVFSPEQGDQR-ARTGAPMTV 69
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG--SNP-DRGLILAFKTIAT 114
+L D GLST I N SG+ ++S + +WQ R SN +R L +A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ RL L ++++ A YKK D++ RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 130 MASRLELPKSVREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIGQ- 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAG--DFMRRFCSNLGMNNQAVKAAQE 232
A+ +KEIGR ++V++L +M + G D++ RFCS LG++ + A E
Sbjct: 189 ASRTGRKEIGRTYRFMVREL--------KMKIMPTGPEDYISRFCSGLGLDAEVEAKAYE 240
Query: 233 AVQKSEEFDI 242
++ ++E ++
Sbjct: 241 LIKAAQEKEL 250
>gi|254565175|ref|XP_002489698.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|238029494|emb|CAY67417.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|328350117|emb|CCA36517.1| Transcription initiation factor IIB [Komagataella pastoris CBS
7435]
Length = 342
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 137/253 (54%), Gaps = 19/253 (7%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DCK E++ S GD +C CGLVL H +D SEWRTF N ++GD DP RVG
Sbjct: 20 ICRDCKVDPPELIERFSEGDVICGLCGLVLSEHIVDMRSEWRTFNNDDQNGD-DPSRVGE 78
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRL 119
NPLL LST+IA + L R QN D L AF I+ + +
Sbjct: 79 AQNPLLDGDQLSTIIAY--NTDNTRMGRELSRAQNSTVADRKDSALQAAFAKISQLCEGF 136
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L +++ A E+YK V +++S +G++Q++++AA + +ACR+ + PR+ KE+ ++ +
Sbjct: 137 QLPNIVQNGAKEVYKLVYNERSLKGKSQESIMAAAIGLACRKANVPRSFKELWALTD-VP 195
Query: 180 KKEIGRAKEYIVKQL--------GLETGQSVEMGT--IHAGDFMRRFCSNLGMNNQAVKA 229
K EIG+ + I K + GL Q+ + T +A + RFCSNLG++ Q A
Sbjct: 196 KNEIGKVFKIIHKLIQQKHALAGGLLNVQNESIATTQTNAEALIGRFCSNLGLSRQITNA 255
Query: 230 AQEAVQKSEEFDI 242
A+ ++++E +
Sbjct: 256 AEYIARRTKEVGV 268
>gi|448082287|ref|XP_004195101.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359376523|emb|CCE87105.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 137/258 (53%), Gaps = 31/258 (12%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 89 NPLLDSEDLSTMISYVPDNTKA---GRELNRAQSKSLVDKKDNALAAAYAKISQMCDGYQ 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L ++D A E+YK V +++ RG++Q++++AA ++I CR+ R+ KEI ++ N +
Sbjct: 146 LPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWALTN-VPR 204
Query: 181 KEIGRAKEYIVK----------------QLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224
KEIG+ + +++ Q ++T Q+ A D +RRFCS+LG+N
Sbjct: 205 KEIGKVFKIMIRIVREKNESDPNAHSLIQDNMQTSQT------SAEDLIRRFCSHLGLNT 258
Query: 225 QAVKAAQEAVQKSEEFDI 242
Q AA+ ++ ++ +
Sbjct: 259 QITNAAEYIARRCKDVGV 276
>gi|344303899|gb|EGW34148.1| hypothetical protein SPAPADRAFT_59562 [Spathaspora passalidarum
NRRL Y-27907]
Length = 342
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 17/252 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DC++ ++V S GD +C CGLVL +D SEWRTF N ++GD DP RVG
Sbjct: 20 VCPDCRQFPPDLVERFSEGDIICGNCGLVLSDRIVDTRSEWRTFNNDDQNGD-DPSRVGD 78
Query: 62 PTNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDR 118
NPLL LST+I+ P G G + L R Q + + L A+ I + +
Sbjct: 79 SGNPLLDTEDLSTMISYVPQG--GNRVGRDLTRIQQKSLVDKKNNALNAAYIRIQELCNG 136
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
L T+ D A +YK V + K RG++QD+++AA + + CR+ D PRT++EI ++ N
Sbjct: 137 YQLPKTVTDAAKHLYKAVREDKLLRGKSQDSIMAAVILLGCRRSDVPRTLEEIRALTNVP 196
Query: 179 TKK--EIGRAKEYIVKQLGLETGQS------VEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+K+ ++ R + I+ + QS + T A D +RRFCS+LG+ Q AA
Sbjct: 197 SKQIAKVARLIKKIIHSHLVANPQSSILEETTSLTTHSAEDLIRRFCSHLGLTPQVTNAA 256
Query: 231 QEAVQKSEEFDI 242
+ ++ ++ +
Sbjct: 257 EHIARQCKDIGV 268
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C EV+ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 25 CPECSSE-EVITDDDQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 83 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 143 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVAEV 202
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S LG++ + A E +
Sbjct: 203 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASELGLSEEVQSKATEII 255
Query: 235 QKSEE 239
S E
Sbjct: 256 DVSAE 260
>gi|146422766|ref|XP_001487318.1| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 141/249 (56%), Gaps = 15/249 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + DP RVG +
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLADGGLSTVIAK-PN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST+I+ PN G +G LS + + ++ D L+ A+ I+ M + L
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLSRA--QLKSAIDRKDSSLVAAYSKISHMCEGYQL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
++D + EIYK V D+K RG++Q++++AA + + CR+ + R+ EI ++ N KK
Sbjct: 143 PRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRSFLEIAALTN-VPKK 201
Query: 182 EIGRAKEYIVKQLGLETGQSVE--------MGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
E+GR + +++ L + + + + + A D +RRFCS+LG++ Q AA+
Sbjct: 202 ELGRVFKTMIQLLQEKHSNNPDVMHMTQQPVSSTSAEDLIRRFCSHLGLSTQISNAAEYI 261
Query: 234 VQKSEEFDI 242
++ ++ I
Sbjct: 262 ARRCKDEQI 270
>gi|344304701|gb|EGW34933.1| hypothetical protein SPAPADRAFT_58062 [Spathaspora passalidarum
NRRL Y-27907]
Length = 347
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 135/252 (53%), Gaps = 18/252 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST+I+ N +G L+ + +N D L A++ I+ M + L
Sbjct: 85 NPLLDTEDLSTMISYVPENSRAGRELNRA--HQKNTVDKKDNALAAAYQKISQMCEGYQL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
++D A E+YK V D+K RG++Q++++AA ++I CR+ R+ KEI ++ N +K
Sbjct: 143 PKIVQDGAKEVYKMVHDEKPLRGKSQESIMAASIFIGCRKAKVARSFKEIWALTN-VPRK 201
Query: 182 EIGRAKEYIVKQLGLETG-----------QSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
EIG+ + + K + + +++ A D +RRFCS+LG++ Q A
Sbjct: 202 EIGKVFKIMDKVIREKNAANPTNAIYFSQDNIQTTQTSAEDLIRRFCSHLGLHTQVTNGA 261
Query: 231 QEAVQKSEEFDI 242
+ ++ +E +
Sbjct: 262 EYIARRCKEVGV 273
>gi|332025651|gb|EGI65813.1| Transcription initiation factor IIB [Acromyrmex echinatior]
Length = 308
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 98/144 (68%), Gaps = 7/144 (4%)
Query: 99 SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIA 158
S+ DR L+ AF+ I M+DR+ L TI DRAN ++K+V D K+ +GR DA+ +ACLYIA
Sbjct: 100 SSSDRTLLNAFREINGMADRINLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIA 159
Query: 159 CRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCS 218
CRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCS
Sbjct: 160 CRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCS 212
Query: 219 NLGMNNQAVKAAQEAVQKSEEFDI 242
NLG+ N +AA +K+ E DI
Sbjct: 213 NLGLPNMVQRAATHIARKAVEIDI 236
>gi|425768808|gb|EKV07320.1| Transcription initiation protein [Penicillium digitatum Pd1]
gi|425770141|gb|EKV08614.1| Transcription initiation protein [Penicillium digitatum PHI26]
Length = 350
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 126/240 (52%), Gaps = 25/240 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG +N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
PLL L T IA +G SG + L R QN+ G ++ L+ A+K I + D +
Sbjct: 85 PLLNGAQLETSIA--SGGSGR--ARDLYRAQNKQSGEKANKALLAAYKEIGALCDGFNIQ 140
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
T+ D A ++K V+D K+ +G++Q+ ++A C++IACRQ PRT EI +V T+KE
Sbjct: 141 KTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKE 199
Query: 183 IGRAKEYIVKQL----------GLETGQSVEMG-------TIHAGDFMRRFCSNLGMNNQ 225
IGR + + K LE G++ + + D RFC+ L + Q
Sbjct: 200 IGRIYKALEKFFTTQNVERHNAALENGETHDFAGDYNATTSTKPSDLCNRFCNLLDLPYQ 259
>gi|255942455|ref|XP_002561996.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586729|emb|CAP94376.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 126/240 (52%), Gaps = 25/240 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG +N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
PLL L T IA +G SG + L R QN+ G ++ L+ A+K I + D +
Sbjct: 85 PLLNGAQLETSIA--SGGSGR--ARDLYRAQNKQSGEKANKALLAAYKEIGALCDGFNIQ 140
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
T+ D A ++K V+D K+ +G++Q+ ++A C++IACRQ PRT EI +V T+KE
Sbjct: 141 KTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKE 199
Query: 183 IGRAKEYIVKQL----------GLETGQSVEMG-------TIHAGDFMRRFCSNLGMNNQ 225
IGR + + K LE G++ + + D RFC+ L + Q
Sbjct: 200 IGRIYKALEKFFTTQNVERHNAALENGETHDFAGDYNATTSTKPSDLCNRFCNLLDLPYQ 259
>gi|342879738|gb|EGU80975.1| hypothetical protein FOXB_08534 [Fusarium oxysporum Fo5176]
Length = 345
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 131/240 (54%), Gaps = 30/240 (12%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C +C +V + S+GDTVC +CG+V+ S ID SEWRTFAN+ G +DP RVGGP
Sbjct: 21 CPECNISPPHLVEEFSSGDTVCEDCGMVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 80
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRLG 120
+ + L+T +A + + LS R QN +N D+ GL+ A+K I + + +
Sbjct: 81 DEFVEGQQLATTVAFSETKAHKALS----RTQNN-TNQDKSQKGLMQAYKEIVSYCEAIN 135
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +K
Sbjct: 136 MGTNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSK 194
Query: 181 KEIGRAKEYIVKQL---------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
KE+GR + KQL GL T + E ++ A D R+ S LG Q
Sbjct: 195 KEVGR----VFKQLQSFLQKLQDQDGEATGLNTVTNYENTSVGAEDLCGRYVSQLGFTKQ 250
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ +C +CGLV+E ID EWR F +E + RVG P
Sbjct: 32 CPECG-SPRLIRDFKRGEFICQDCGLVIEDTYIDSGPEWRAFDSEQREKRS-RVGAPITY 89
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 90 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 149
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+ EI +
Sbjct: 150 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 209
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR +I ++LGL ++ D++ RFC+ LG++ + K A E +
Sbjct: 210 SR-VDRKEIGRTYRFIARELGL------KLLPTSPADYVPRFCAALGLSGEVQKKAIEII 262
Query: 235 QKSEEFDI 242
+K+EE ++
Sbjct: 263 KKAEEKEL 270
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 132/240 (55%), Gaps = 30/240 (12%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DC++ ++ + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 24 CPDCREIPPNLIEEFSSGDVVCESCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRLG 120
+ + L+T +A + + LS R QN +N D+ GL+ A+K I ++ + +
Sbjct: 84 DEFVEGQQLATTVAFSESKAHKALS----RTQNN-TNQDKAQKGLMQAYKEIVSLCEAIN 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +K
Sbjct: 139 MGQNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSK 197
Query: 181 KEIGRAKEYIVKQL---------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
KE+GR + KQL GL + E ++ A D R+ S LG NQ
Sbjct: 198 KEVGR----VFKQLQSFLQKLQGQDGEATGLNAVTNYENTSVGAEDLCGRYVSQLGFKNQ 253
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ VC +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELVCQDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 16 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 194 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 246
Query: 235 QKSEE 239
+K+ E
Sbjct: 247 EKTAE 251
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 16 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 194 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 246
Query: 235 QKSEE 239
+K+ E
Sbjct: 247 EKTAE 251
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T V+ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECE-STNVITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S LG++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALGLSEEVQAKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 26 CPECESEN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T ++ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 11 CPECES-TNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 68
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 69 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 129 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S LG++ + A E +
Sbjct: 189 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALGLSEEVQAKATEII 241
Query: 235 QKSEE 239
S E
Sbjct: 242 DVSAE 246
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 24 CPECESDSLVRSADGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 82
Query: 66 LLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 83 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
MS LG+ ++++ A+ IY++ D RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 143 MSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVAEV 202
Query: 175 ANGATKKEIGRAKEYIVKQ--LGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
A +KEIGR YI ++ LGLE V+ ++ RFCS LG++ + + +E
Sbjct: 203 AR-VEQKEIGRTYRYIAQELSLGLEPVDPVQ--------YVPRFCSELGLSEEVEQKTRE 253
Query: 233 AVQKSEE 239
++ + E
Sbjct: 254 IIEVTAE 260
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T ++ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECE-STNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S LG++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALGLSEEVQAKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|336270348|ref|XP_003349933.1| hypothetical protein SMAC_00825 [Sordaria macrospora k-hell]
gi|380095322|emb|CCC06795.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 348
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 131/237 (55%), Gaps = 22/237 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK+ +V + S+GD VC +CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 24 ICPECKEDPPHLVEEFSSGDMVCGDCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGL 121
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D +
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSINA 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ + A IYK VED K+ +G++Q+A+ A C++IACRQ PRT +EI S+ +KK
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VSKK 198
Query: 182 EIGRA---KEYIVKQLGLE-----------TGQSVEMGTIHAGDFMRRFCSNLGMNN 224
EIGR E ++++G E Q G+ A + R+CSNL N
Sbjct: 199 EIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V G+ VC ECGL++E +ID EWR F N S + RVG PT
Sbjct: 29 CEECESGT-LVKSQDQGELVCDECGLIVEGSNIDRGPEWRAF-NHSERQNKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTSIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++E+ +V
Sbjct: 147 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVATV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR Y+ ++LGL EM + ++ RFCS+L ++ + A E +
Sbjct: 207 SR-VERKEIGRTYRYVAQELGL------EMAPVDPKKYVPRFCSDLELSEEVTAKANEII 259
Query: 235 QKSEE 239
+ E
Sbjct: 260 DTTTE 264
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 130/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ G+ +C +CG V+E ID EWR F +E + RVG P
Sbjct: 33 CPECG-SPRIVRDYKRGELICQDCGYVIEERYIDAGPEWRAFDSEQREKRS-RVGAPITY 90
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GL+T+I N G+ +S L +WQ R + +R L A +
Sbjct: 91 TIHDKGLTTIIDWNNKDYYGKAISVRTRAQLFRLRKWQRRIRISNATERNLAFALSELDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+ EI
Sbjct: 151 MASALGLPKSVRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIAQY 210
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR +I ++LGL ++ D++ RFC+ LG++ + + A E +
Sbjct: 211 SR-VDRKEIGRTYRFIARELGL------KLMPTSPADYVPRFCAALGLSGEVQRKAIEII 263
Query: 235 QKSEEFDI 242
+K+EE ++
Sbjct: 264 KKAEEREL 271
>gi|255716964|ref|XP_002554763.1| KLTH0F13200p [Lachancea thermotolerans]
gi|238936146|emb|CAR24326.1| KLTH0F13200p [Lachancea thermotolerans CBS 6340]
Length = 359
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 139/250 (55%), Gaps = 16/250 (6%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + V + S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKIYPPKVAERFSEGDVVCAMCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G+ +F + L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQAQGSDVKF-TRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK ++++ +G++Q++++A+ + + CR+ + R+ KEI S+ N K
Sbjct: 146 LPKIVKDCAKEAYKICYEERALKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VKK 204
Query: 181 KEIGRA---KEYIVKQLGLETGQSVEMGTIHAGD-----FMRRFCSNLGMNNQAVKAAQE 232
KEIG+ + I+++ +++ TI +G F+ RFCS+LG++ Q AA+
Sbjct: 205 KEIGKTFTIIKSILREKNANGFANIDTATISSGQTSAETFIPRFCSHLGLSVQIANAAEY 264
Query: 233 AVQKSEEFDI 242
+ ++ ++
Sbjct: 265 TAKHCKDINV 274
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ +V D G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 15 VCPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTT 72
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 73 QTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEID 132
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI
Sbjct: 133 RMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISE 192
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E
Sbjct: 193 VSR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEI 245
Query: 234 VQKSEE 239
++K+ E
Sbjct: 246 IEKTAE 251
>gi|363752235|ref|XP_003646334.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889969|gb|AET39517.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
Length = 354
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 139/251 (55%), Gaps = 18/251 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G+ + L+ L R Q++ D L ++ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQAQGSDVK-LTRELNRAQSKSIVDKKDNELQASYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK ++++ +G++Q++++A+ + + CR+ + R+ KEI S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERALKGKSQESIMASVILLGCRRAEVGRSFKEILSLTN-VRK 204
Query: 181 KEIGRAKEYIVKQL---------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
KEIG+ I K L ++T ++ G A F+ RFCS+LG++ Q AA+
Sbjct: 205 KEIGKTLNIIKKILREKNDRGFVNIDTA-NISTGQTSAETFIPRFCSHLGLSVQVANAAE 263
Query: 232 EAVQKSEEFDI 242
+ +++ ++
Sbjct: 264 YIAKHAKDINV 274
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 134/248 (54%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C +V D + G+ +C +CGLVLE + ID+ +EWR F+ E GD R G P
Sbjct: 12 CTECASRN-LVKDENRGELICQDCGLVLEDNVIDQGAEWRVFSPEQGDQR-ARTGAPMTV 69
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG--SNP-DRGLILAFKTIAT 114
+L D GLST I N SG+ +SS + +WQ R SN +R L +A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ RL L +I++ A YKK + + RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 130 MASRLDLPKSIREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEIGE- 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A+ +KEIGR ++V++L + ++ D++ RFCS L ++ + A E +
Sbjct: 189 ASRTGRKEIGRTYRFMVRELKM------KIPPTKPEDYIPRFCSGLDLDAEVQAKAYELI 242
Query: 235 QKSEEFDI 242
++E ++
Sbjct: 243 AAAQEREL 250
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECDSDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 20/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V G+ VC +CGL+++ +ID EWR F N S + RVG PT
Sbjct: 20 CPECES-SALVTSADGGEIVCEDCGLIIDEGNIDRGPEWRAF-NHSERQEKSRVGAPTTQ 77
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 78 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 137
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ D+ RGR+ + + ACLY ACRQED PR+++E+ V
Sbjct: 138 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQEDIPRSLEEVSEV 197
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR Y+ ++L S++M + ++ RF S L ++ + A E +
Sbjct: 198 SR-VEQKEIGRTYRYVAQEL------SLKMEPVDPKQYVPRFVSELELSEEVQAKANEII 250
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 125/247 (50%), Gaps = 23/247 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 28 CPECDSDSLVRSGDGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
MS LG+ ++++ A+ IY++ D RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 147 MSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVADV 206
Query: 175 ANGATKKEIGRAKEYIVKQ--LGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
A +KEIGR YI ++ LGLE V+ ++ RFCS LG++ + + +E
Sbjct: 207 AR-VEQKEIGRTYRYIAQELSLGLEPVDPVQ--------YVPRFCSELGLSEEVEQKTRE 257
Query: 233 AVQKSEE 239
++ + E
Sbjct: 258 IIEVTAE 264
>gi|361129570|gb|EHL01473.1| putative Transcription initiation factor IIB [Glarea lozoyensis
74030]
Length = 342
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC+ CGLVL +D SEWRTFAN+ G++DP RVG
Sbjct: 24 MCKDCKEYPPNLVEEFSSGDMVCASCGLVLGERVVDSRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
N LL L T IA G S L R Q + N + L+ A+K I D +
Sbjct: 84 PNVLLNGSQLQTTIAY---GDGNARSRDLLRAQGKTGNDKSTKSLLAAYKEIGAHCDAVN 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ + D A ++K+V+D K+ +G++QDA++A C++IACRQ + PRT +EI ++ +K
Sbjct: 141 IPKNVSDTAKYLFKQVDDGKAFKGKSQDAIIAGCIFIACRQCNVPRTFREIFALTK-VSK 199
Query: 181 KEIGR 185
K+IGR
Sbjct: 200 KDIGR 204
>gi|347835786|emb|CCD50358.1| similar to transcription initiation factor iib [Botryotinia
fuckeliana]
Length = 350
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 27/254 (10%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N+ G++DP RVG
Sbjct: 22 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRLG 120
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 82 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ + D A ++K V+D K+ +G++Q+A++A C++IACRQ PRT +EI ++ +K
Sbjct: 139 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFREIYALTK-VSK 197
Query: 181 KEIGRAKEYIVK-----------------QLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
K+IGR + + K L G T +A D R+CS LG+
Sbjct: 198 KDIGRTFKALEKFFASDSSAKKATADATGALAAPDGYQTTTST-NAKDLCTRYCSQLGLK 256
Query: 224 NQA-VKAAQEAVQK 236
+Q VK +Q +K
Sbjct: 257 SQQFVKISQGLAEK 270
>gi|154292104|ref|XP_001546629.1| hypothetical protein BC1G_14861 [Botryotinia fuckeliana B05.10]
Length = 348
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 27/254 (10%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N+ G++DP RVG
Sbjct: 21 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRLG 120
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 81 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 137
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ + D A ++K V+D K+ +G++Q+A++A C++IACRQ PRT +EI ++ +K
Sbjct: 138 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFREIYALTK-VSK 196
Query: 181 KEIGRAKEYIVK-----------------QLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
K+IGR + + K L G T +A D R+CS LG+
Sbjct: 197 KDIGRTFKALEKFFASDSSAKKATADATGALAAPDGYQTTTST-NAKDLCTRYCSQLGLK 255
Query: 224 NQA-VKAAQEAVQK 236
+Q VK +Q +K
Sbjct: 256 SQQFVKISQGLAEK 269
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V + + + +C +CGL++E +ID EWR F N S RVG PT
Sbjct: 28 CPECD-SADLVTSNDSNEIICEDCGLIIEERNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 86 TMHDKGLTTQIDWKDKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ ++ IY++ + RGR+ + + +CLY CRQE PR+++E+ V
Sbjct: 146 MASALGVPRSVREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVAEV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ KKEIGR Y+ K+LGL EM + +++ RFCS+L + + A E +
Sbjct: 206 SR-VEKKEIGRTYRYVAKELGL------EMKPVDPKEYVPRFCSDLEASEEVEMKATEII 258
Query: 235 QKSEE 239
+ E
Sbjct: 259 DTTAE 263
>gi|336471507|gb|EGO59668.1| hypothetical protein NEUTE1DRAFT_39488 [Neurospora tetrasperma FGSC
2508]
gi|350292608|gb|EGZ73803.1| cyclin-like protein [Neurospora tetrasperma FGSC 2509]
Length = 348
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 130/237 (54%), Gaps = 22/237 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 24 MCPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGL 121
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D +
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSINA 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ + A IYK VED K+ +G++Q+A+ A C++IACRQ PRT +EI S+ +KK
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VSKK 198
Query: 182 EIGRA---KEYIVKQLGLE-----------TGQSVEMGTIHAGDFMRRFCSNLGMNN 224
EIGR E ++++G E Q G+ A + R+CSNL N
Sbjct: 199 EIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
>gi|85068255|ref|XP_962143.1| hypothetical protein NCU07289 [Neurospora crassa OR74A]
gi|28923740|gb|EAA32907.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 348
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 130/237 (54%), Gaps = 22/237 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 24 MCPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGL 121
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D +
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSINA 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ + A IYK VED K+ +G++Q+A+ A C++IACRQ PRT +EI S+ +KK
Sbjct: 140 GTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VSKK 198
Query: 182 EIGRA---KEYIVKQLGLE-----------TGQSVEMGTIHAGDFMRRFCSNLGMNN 224
EIGR E ++++G E Q G+ A + R+CSNL N
Sbjct: 199 EIGRVFKQLESFLQKIGGEEHAITTSIPTFNQQYQGKGSTTATELCARYCSNLNFRN 255
>gi|116195684|ref|XP_001223654.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
gi|88180353|gb|EAQ87821.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
Length = 353
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 144/255 (56%), Gaps = 29/255 (11%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGP 62
C +CK+ +V ++S+GD VC CGLVL+ ID SEWRTF+ +++G++DP RVG
Sbjct: 26 ICPECKEDPPRLVEEYSSGDMVCETCGLVLD-RIIDTRSEWRTFSGDDNGNDDPSRVGDA 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N ++ L T IA + +L QN+ N D+G L+ A++ I ++D +
Sbjct: 85 PNLMIDGDQLQTAIAFDGKGA-----KNLAHLQNK-INQDKGTKVLLQAYRDIQALTDSI 138
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
+ + A I+K V+D K+ +G++Q+A++A C++IACRQ + PRT +E+ + +
Sbjct: 139 NAGTQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTK-VS 197
Query: 180 KKEIGRA---KEYIVKQLGLE------TGQSVEM---GTIHAGDFMRRFCSNLGMNNQAV 227
KKEIGR E ++++G E TG S + G+ A + R+CSNLG N AV
Sbjct: 198 KKEIGRVFKQLESFLQKMGGEDKVAKATGYSQQYTAKGSTTADELCIRYCSNLGFRN-AV 256
Query: 228 K---AAQEAVQKSEE 239
+ A+ +KS E
Sbjct: 257 RVESVARRLAEKSSE 271
>gi|452989000|gb|EME88755.1| hypothetical protein MYCFIDRAFT_159927 [Pseudocercospora fijiensis
CIRAD86]
Length = 362
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 134/251 (53%), Gaps = 30/251 (11%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DC++ ++ DH++GD +C CGLVL+ SID +SEWRTF+N + G++DP RVG
Sbjct: 31 MCRDCREDPPDLREDHASGDLICGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDG 90
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N LL L+T IA +G S L R QN+ +N D+G L+ A+K I + D
Sbjct: 91 PNALLNGAQLNTSIAFGDGG---IRSKELHRAQNK-ANLDKGNKTLLQAYKQIGALCDGW 146
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L ++ D A I+K ++ + +G++Q+AL+A C+++ACR+ + R+ +E+ + +
Sbjct: 147 QLPNSVSDTAKHIFKDADESRLFKGKSQEALIAGCVFLACRRNNVARSFREVMELTK-VS 205
Query: 180 KKEIGRAKEYIVKQL-------------GLETGQSVEMGTIHAG-------DFMRRFCSN 219
KKEIGR + + L + G +V + G D +RFCS
Sbjct: 206 KKEIGRTFKLLENFLMNKEKDKGASGATSMVAGGTVVYNEQYKGSTSSDPADLCQRFCSQ 265
Query: 220 LGMNNQAVKAA 230
L M+ + A
Sbjct: 266 LDMDQRTTNMA 276
>gi|443927143|gb|ELU45667.1| transcription initiation factor IIB [Rhizoctonia solani AG-1 IA]
Length = 354
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 133/245 (54%), Gaps = 20/245 (8%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEW---RTFANESGDNDPVRVG 60
C +CK + ++V + +GD VC +CGLVL +D SE TFAN+ GD DP RVG
Sbjct: 30 ICPECKDMNPKIVEEFGSGDLVCGDCGLVLGDRIVDTRSECECPHTFANDEGD-DPSRVG 88
Query: 61 GPTNPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSD 117
TNPLL L TVI+ +G SG ++ L R RGS +R ++ AF+ I+ M +
Sbjct: 89 AATNPLLEGIEQLDTVISFKDGGSG--MARELQRAAARGSVGKNERNMMTAFRDISAMCE 146
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG 177
+ L + D A ++YK+ E++K RG++ DA++A C+ IACRQ + PRT KEI +
Sbjct: 147 SISLPKNVSDTAKQLYKRAEEEKIVRGKSADAVVACCILIACRQANVPRTFKEIHQLTR- 205
Query: 178 ATKKEIGRAKEYIVKQLGL--------ETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
KK +G+ + + L + G GT A + + R+C+ L ++ V A
Sbjct: 206 VPKKTLGQCFKAFEQAFDLSRPAPADGQDGAGPASGT-SAENLLNRYCNQLHLHASVVTA 264
Query: 230 AQEAV 234
+E V
Sbjct: 265 CEEVV 269
>gi|115396260|ref|XP_001213769.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
gi|114193338|gb|EAU35038.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
Length = 351
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 109/184 (59%), Gaps = 8/184 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAV 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D G+
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCDGWGI 140
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ + PRT +EI +V ++K
Sbjct: 141 QKNVADTAKYLFKTVDDAKAFKGKSQDVIIAGCIFIACRQRNVPRTFQEIFAVTK-VSRK 199
Query: 182 EIGR 185
EIGR
Sbjct: 200 EIGR 203
>gi|240273589|gb|EER37109.1| transcription initiation protein [Ajellomyces capsulatus H143]
gi|325087490|gb|EGC40800.1| transcription initiation protein [Ajellomyces capsulatus H88]
Length = 352
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 114/202 (56%), Gaps = 10/202 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V TKK
Sbjct: 142 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQNLE 219
>gi|154271255|ref|XP_001536481.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
gi|150409704|gb|EDN05148.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
Length = 352
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 114/202 (56%), Gaps = 10/202 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V TKK
Sbjct: 142 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQNLE 219
>gi|225556484|gb|EEH04772.1| transcription initiation protein [Ajellomyces capsulatus G186AR]
Length = 352
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 114/202 (56%), Gaps = 10/202 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V TKK
Sbjct: 142 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQNLE 219
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDDYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQTKANEII 256
Query: 235 QKSEE 239
+K+ E
Sbjct: 257 EKTAE 261
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V HS G+ VC +CGLVL+ +ID EWR F N++ + RVG PT
Sbjct: 28 CPECSSDSIV---HSGGELVCDDCGLVLDEQNIDRGPEWRAF-NQNERDSKSRVGAPTTK 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 84 TMHDKGLTTQIDWKNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG + ++ A+ +Y++ ++ RGR+ +A+ +CLY ACR E PR++ E+ V
Sbjct: 144 MASALGAPRSTREVASVLYRRALNEDLIRGRSIEAVSTSCLYAACRMEGIPRSLDEVTEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A KEIGR YI ++L L EM + +++ RF S LG++ + + A E +
Sbjct: 204 AR-VPYKEIGRTYRYIAQELKL------EMQPVDPKEYVPRFASELGVSEEVKQKANEII 256
Query: 235 QKSEE 239
S E
Sbjct: 257 DVSAE 261
>gi|406607062|emb|CCH41577.1| Transcription initiation factor IIB [Wickerhamomyces ciferrii]
Length = 339
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 134/254 (52%), Gaps = 25/254 (9%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK E+ + GD VC+ CGLVL + +D SEWRTF+N+ + +DP RVG
Sbjct: 19 CPECKVFPPELAERFAEGDVVCALCGLVLSNKIVDTRSEWRTFSNDDQNGDDPSRVGEAG 78
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATMSD 117
NPLL LST+I G S GR N+ + D L A+ I+ M D
Sbjct: 79 NPLLDGNQLSTMIGYGQG------DSRAGRDLNKAQSKSIVDKKDNALQSAYAKISMMCD 132
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG 177
L ++D A + YK D+K+ +G++Q++++AA + + CR+ RT KEIC++
Sbjct: 133 AAQLPRIVQDGAKQAYKLSHDEKALKGKSQESIMAAVIVVGCRKAQVDRTFKEICTLTR- 191
Query: 178 ATKKEIGRAKEYIVKQLGLETGQS---------VEMGTIHAGDFMRRFCSNLGMNNQAVK 228
KKEIGR I+K++ + Q+ ++ A D +RRFCS+LG++ Q
Sbjct: 192 VPKKEIGRV-FVIIKKILEQKNQTTTTYMAQENIQSSQTSAEDLIRRFCSHLGLSIQLSN 250
Query: 229 AAQEAVQKSEEFDI 242
AA+ ++ ++ +
Sbjct: 251 AAEHIAKRCKDVGV 264
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+ +C +CGLV+E +ID EWR F N + RVG PT
Sbjct: 27 CPECGSDS-LVKDADRGELICEDCGLVVEEGNIDPGPEWRAF-NHQERQEKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ D RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 145 MASALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYISQELGL------EMEPVDPKKYVPRFCSELELSEEVQSKANEII 257
Query: 235 QKSEE 239
+ + E
Sbjct: 258 ETTAE 262
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 123/245 (50%), Gaps = 22/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V HS G+ +C +CGLVL+ +ID EWR F N S RVG PT
Sbjct: 48 CPECNSENLV---HSEGEVICDDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPTTK 103
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I N A G LSS L +WQ R D R L A +
Sbjct: 104 TMHDKGLTTTIDWQNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDR 163
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 164 MASALGVPDSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 223
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 224 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASELELSKEVQSKANEII 276
Query: 235 QKSEE 239
S E
Sbjct: 277 DVSAE 281
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ D G+ VC++CGLV++ SID EWR F N S RVG P
Sbjct: 24 CPECD-STDIITDADQGELVCNDCGLVIDERSIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALELSEEVQAKAVEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D S + VC +CGLVLE ID EWR F N S + RVG PT
Sbjct: 25 CPECN-SANVITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G L + L +WQ R D R L A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + ACLY ACRQE PRT++E+ V
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEV 200
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A +KEIGR Y+ ++L S+E+ +++ RF S+L ++ + + A+E +
Sbjct: 201 AR-IDQKEIGRTYRYVAQEL------SLEIQPTDPKEYLPRFASDLELSEEVIAKAREII 253
Query: 235 QKSEE 239
S E
Sbjct: 254 DTSAE 258
>gi|6980707|pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980709|pdb|1C9B|E Chain E, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980711|pdb|1C9B|I Chain I, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980713|pdb|1C9B|M Chain M, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980715|pdb|1C9B|Q Chain Q, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 207
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 94/141 (66%), Gaps = 7/141 (4%)
Query: 102 DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQ
Sbjct: 2 DRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQ 61
Query: 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLG 221
E PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL
Sbjct: 62 EGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLC 114
Query: 222 MNNQAVKAAQEAVQKSEEFDI 242
+ Q AA +K+ E D+
Sbjct: 115 LPKQVQMAATHIARKAVELDL 135
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 127/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + + + +C ECGLV+E +ID EWR F N + + RVG PT
Sbjct: 32 CPECDSGA-LVASNDSNEIICEECGLVIEEQNIDHGPEWRAF-NHAERQNKSRVGAPTTQ 89
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 90 TMHDKGLTTQIDWKNKDAHGRSISSKKRNQLNRLRKWQERIRTKDAGERNLQFALSEIDR 149
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + +CLY CRQE PR+++E+ V
Sbjct: 150 MASALGVPRSVREVASVIYRQALSEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVTEV 209
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ KKEIGR YI K+L S+EM +++ RFCS+L ++ + A E +
Sbjct: 210 SR-VGKKEIGRTYRYIAKEL------SLEMKPADPKEYVPRFCSDLEVSEEVKMKAIEII 262
Query: 235 QKSEE 239
+S E
Sbjct: 263 DESAE 267
>gi|150866589|ref|XP_001386238.2| hypothetical protein PICST_85155 [Scheffersomyces stipitis CBS
6054]
gi|149387845|gb|ABN68209.2| general RNA polymerase II transcription factor, TFIIB subunit
[Scheffersomyces stipitis CBS 6054]
Length = 350
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 136/257 (52%), Gaps = 29/257 (11%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 29 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATM 115
NPLL LST+I+ P ++ +GR NR + D L A+ I+ M
Sbjct: 88 GNPLLDTEDLSTMISYVPE-------NTRVGRELNRAQSKSLVDKKDNALAAAYAKISQM 140
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 175
D L ++D A E+YK V D++ RG++Q++++AA ++I CR+ R+ KEI ++
Sbjct: 141 CDGYQLPKIVQDGAKEVYKLVYDERPLRGKSQESIMAAAIFIGCRKAKVARSFKEIWALT 200
Query: 176 NGATKKEIGRAKEYIVKQL---------GLETGQ-SVEMGTIHAGDFMRRFCSNLGMNNQ 225
N +KEIG+ + I K + L Q +++ A D +RR CS+LG+N Q
Sbjct: 201 N-VPRKEIGKVFKIIDKVIQEKNAANPNALMFNQDNMQTTQTTAEDLIRRNCSHLGLNAQ 259
Query: 226 AVKAAQEAVQKSEEFDI 242
A+ ++ +E +
Sbjct: 260 VTNGAEYIARRCKEVGV 276
>gi|295671166|ref|XP_002796130.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|225681734|gb|EEH20018.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb03]
gi|226284263|gb|EEH39829.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226288886|gb|EEH44398.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb18]
Length = 352
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAVN 85
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGLV 122
PLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 86 PLLNGNQLETQISYGVGGS---RSRDLHRAQNKMSSEKTNKTLLAAYKEIGALCDGFNIP 142
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V TKKE
Sbjct: 143 KNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKE 201
Query: 183 IGRAKEYIVKQLGLETGQSVE 203
IGR + + K T Q++E
Sbjct: 202 IGRIYKALEKFF---TAQNLE 219
>gi|119187159|ref|XP_001244186.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|303317234|ref|XP_003068619.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108300|gb|EER26474.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038548|gb|EFW20483.1| transcription initiation factor IIB [Coccidioides posadasii str.
Silveira]
gi|392870902|gb|EAS32745.2| transcription initiation factor IIB [Coccidioides immitis RS]
Length = 353
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 115/202 (56%), Gaps = 10/202 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 26 ICPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + + L R QN+ S+ +R L+ A+K I + D +
Sbjct: 86 NPLLNGNQLETQISYGQGGAK---TRELHRAQNKMSSEKTNRALLAAYKEIGALCDGFNI 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI ++ +KK
Sbjct: 143 QKNVADTAKYLFKVVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFALTR-VSKK 201
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 202 EIGRIYKALEK---FFTAQNLE 220
>gi|67537516|ref|XP_662532.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|40741816|gb|EAA61006.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|259482202|tpe|CBF76459.1| TPA: transcription initiation protein (AFU_orthologue;
AFUA_3G10620) [Aspergillus nidulans FGSC A4]
Length = 351
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 123/241 (51%), Gaps = 25/241 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG T
Sbjct: 25 ICPECKEMPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D G+
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSDKANKSLLAAYKEIGALCDGFGI 140
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACR+ PRT EI +V ++K
Sbjct: 141 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRTFTEIFAVTK-VSRK 199
Query: 182 EIGR---AKEYIVKQLGLETGQSV--------------EMGTIHAGDFMRRFCSNLGMNN 224
EIGR A E LE +V + D RFC+ L +
Sbjct: 200 EIGRIYKALEKFFTSQNLERANAVVSNGGVPDPNDTYTATTSTKPSDLCSRFCNLLDLPF 259
Query: 225 Q 225
Q
Sbjct: 260 Q 260
>gi|50307385|ref|XP_453671.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|464871|sp|Q05959.1|TF2B_KLULA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|173289|gb|AAA35258.1| human TFIIB homologue protein [Kluyveromyces lactis]
gi|49642805|emb|CAH00767.1| KLLA0D13640p [Kluyveromyces lactis]
Length = 357
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 18/251 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL L+T I + G+ ++ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK +++ +G++Q++++A+ + + CR+ + R+ KEI S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRK 204
Query: 181 KEIGRAKEYIVKQLGLETG---------QSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
KEIG+ I+K + E ++ G A F+ RFCS+LG++ Q AA+
Sbjct: 205 KEIGKTFT-IIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAAE 263
Query: 232 EAVQKSEEFDI 242
+ S++ ++
Sbjct: 264 YIAKHSKDVNV 274
>gi|255540857|ref|XP_002511493.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223550608|gb|EEF52095.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 89
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Query: 136 VEDQKSS-RGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 194
+EDQK GRNQDA+ AACLYIACRQE+KPRT KEICSV NGATKKEIGRA+ +I+K L
Sbjct: 1 MEDQKKPLEGRNQDAITAACLYIACRQENKPRTPKEICSVVNGATKKEIGRAEVFILKHL 60
Query: 195 GLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224
+E G VE GTIHA D++RR CSNLG+ N
Sbjct: 61 EVEMGH-VEAGTIHAADYLRRVCSNLGLTN 89
>gi|261193976|ref|XP_002623393.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239588407|gb|EEQ71050.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239607027|gb|EEQ84014.1| transcription initiation factor IIB [Ajellomyces dermatitidis ER-3]
gi|327354501|gb|EGE83358.1| transcription initiation factor IIB [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 114/202 (56%), Gaps = 10/202 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKVLMAAYKEIGALCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V TKK
Sbjct: 142 PKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQNLE 219
>gi|258563760|ref|XP_002582625.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
gi|237908132|gb|EEP82533.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
Length = 353
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 115/202 (56%), Gaps = 10/202 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + + +T+C CGLVL ID+ SEWRTF+N+ +ND P RVG
Sbjct: 26 ICPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + + L R QN+ S+ +R L+ A+K I + D +
Sbjct: 86 NPLLNGNQLETQISYGQGGAK---TRELHRAQNKMSSEKTNRALLAAYKEIGALCDGFNI 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI ++ +KK
Sbjct: 143 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFALTR-VSKK 201
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 202 EIGRIYKTLEK---FFTAQNME 220
>gi|50422739|ref|XP_459946.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
gi|49655614|emb|CAG88192.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
Length = 346
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 39/262 (14%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNP------DRGLILAFKTIATMS 116
NPLL LST+I+ P ++ +GR NR + D L A+ ++ M
Sbjct: 85 NPLLDTEDLSTMISYVPE-------NTKVGRELNRAQSKSLVDKKDNALAAAYSKLSQMC 137
Query: 117 DRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176
D L ++D A E+YK V +++ +G++Q++++AA ++I CR+ R+ KEI ++ N
Sbjct: 138 DGYQLPKIVQDGAKEVYKLVYEERPLKGKSQESIMAAAIFIGCRKAKVARSFKEIWALTN 197
Query: 177 GATKKEIGRA----------------KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 220
+KEIG+ Y + Q ++T Q+ A D +RRFCS+L
Sbjct: 198 -VPRKEIGKVFKIMNKIIQEKNAANPNAYSLIQDNMQTTQT------SAEDLIRRFCSHL 250
Query: 221 GMNNQAVKAAQEAVQKSEEFDI 242
G++ Q AA+ ++ ++ +
Sbjct: 251 GLSTQVTNAAEHIARRCKDVGV 272
>gi|121705606|ref|XP_001271066.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
gi|119399212|gb|EAW09640.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
Length = 350
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG T
Sbjct: 24 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 84 NPLLNGDQLETQIA--SGGSGR--ARDLYRAQNKQSSEKANKALLAAYKEIGALCDGFNI 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V T+K
Sbjct: 140 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 198
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 199 EIGRIYKALEK---FFTAQNLE 217
>gi|400595996|gb|EJP63780.1| transcription factor TFIIB [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 133/242 (54%), Gaps = 33/242 (13%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C DC++ +V + S+GD VC CG+V+ + ID SEWRTFAN ++GD DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGD-DPSRVGGP 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRL 119
+ + L+T +A S +L R QN +N D+ GL+ A+K I ++ + +
Sbjct: 83 QDEFVEGQQLATSVA----FSESRQHKNLLRVQN-NTNQDKQQKGLMQAYKEIVSLCEAI 137
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
+ + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +
Sbjct: 138 NMGQNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VS 196
Query: 180 KKEIGRAKEYIVKQL----------------GLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
KKE+GR + KQL GL T + E ++ A D R+ S LG
Sbjct: 197 KKEVGR----VFKQLQNFLQKLQDTEGEGATGLNTVTNYENTSVGAEDLCSRYVSQLGFK 252
Query: 224 NQ 225
+Q
Sbjct: 253 SQ 254
>gi|351707652|gb|EHB10571.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 234
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 98/153 (64%), Gaps = 9/153 (5%)
Query: 92 GRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDA 149
++QNR S DR ++ AFK M+DR+ L I DR N ++K+V +QKS +GR DA
Sbjct: 17 SKYQNRRTMSISDRAMMNAFKETTPMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDA 76
Query: 150 LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHA 209
+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I
Sbjct: 77 IASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITT 129
Query: 210 GDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 130 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 162
>gi|346322890|gb|EGX92488.1| transcription initiation protein [Cordyceps militaris CM01]
Length = 347
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 32/241 (13%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C DC++ +V + S+GD VC CG+V+ + ID SEWRTFAN ++GD DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGD-DPSRVGGP 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRL 119
+ + L+T +A S +L R QN +N D RGL+ A+K I ++ + +
Sbjct: 83 QDEFVEGQQLATSVA----FSESRQHKNLLRVQN-NTNQDKQQRGLMQAYKEIVSLCEAI 137
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
+ + + A I+K V+ K +G+ Q+A++A C++IACRQ + PRT +EI ++ + +
Sbjct: 138 NMGQNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VS 196
Query: 180 KKEIGRAKEYIVKQL---------------GLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224
KKE+GR + KQL GL T + E ++ A D R+ S +G
Sbjct: 197 KKEVGR----VFKQLQNFLQKLQDTEGEATGLNTVTNYENTSVGAEDLCSRYVSQIGFKA 252
Query: 225 Q 225
Q
Sbjct: 253 Q 253
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 20/243 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGLV++ + +D EWR F + S RVG P
Sbjct: 26 CPECHS-TALVRSTDRGELVCDDCGLVVDDNVVDHGPEWRAF-DHSERQSKSRVGAPVTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K ++G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKNQDSAGHLLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A IY++ D RGR+ + + + LYIACRQE PR+++E+ SV
Sbjct: 144 MASALGVPRSVREVAAVIYRRALDTDLIRGRSIEGVATSALYIACRQEGIPRSLEEVSSV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A ++EIGR YI +LGL M + ++ RFCS L ++ + A +
Sbjct: 204 AR-VDRREIGRTYRYIAHELGL------PMSPVDPKQYLPRFCSELELSEDVQQRATTII 256
Query: 235 QKS 237
+++
Sbjct: 257 ERT 259
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +VV D G+ VC++CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECES-GDVVTDADQGELVCNDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S+L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELRPVDPKQFVPRFSSSLHLSEEVQSKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +VV D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 23 CPECGSD-QVVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 141 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 200
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 201 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALNLSEEVQSKATEII 253
Query: 235 QKSEE 239
S E
Sbjct: 254 DVSAE 258
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 20/250 (8%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+++ C +C + +V G+ VC +CGL++E+ +ID EWR F N + RVG
Sbjct: 22 VSEQTCDECGSSS-LVTSEDQGELVCEDCGLIIETTNIDRGPEWRAF-NHAERKSKSRVG 79
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAF 109
PT + D GL+T I K A G LS+ L +WQ R D R L A
Sbjct: 80 APTTQTMHDKGLTTQIDWKDQDAHGRSLSADKRSRMNRLRKWQERIRAKDAGERNLQFAL 139
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I M+ LG+ ++++ A+ IY++ D+ RGR+ + + ACLY ACR+E PR+++
Sbjct: 140 SEIDRMASALGIPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREGIPRSLE 199
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
EI V+ +KEIGR YI ++L S+ M + +++ RFCS L +
Sbjct: 200 EIADVSR-VERKEIGRTYRYIAQEL------SLAMEPVDPKEYVPRFCSELDSSETVQAK 252
Query: 230 AQEAVQKSEE 239
A E + + E
Sbjct: 253 ATEIIDTTAE 262
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 10/230 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFGSGDLVCGSCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVA 123
+ L L T I+ +G SG +++ S +R L+ AF+ I + D+ L
Sbjct: 89 D-LEGIEQLDTAISFRDGGSGIARELQRAASRSQSSRSERNLLAAFRDIGSWCDQFSLPK 147
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI D A ++YK+ +++K RG+ +A++AAC++IACRQ PRT +EIC++ + +KK +
Sbjct: 148 TISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSKKTL 206
Query: 184 GRAKEYIVKQLGLETG----QSVEMGTIHAGDFMRRFCSNLGM--NNQAV 227
G+ + + + L G QS + + + R+C++L + N Q++
Sbjct: 207 GQCYKALEQAFNLAPGASAHQSATAPSSGPENLLVRYCNHLDLPPNVQSI 256
>gi|257388456|ref|YP_003178229.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170763|gb|ACV48522.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 324
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 21/244 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
++ C +C HT++ +H G+TVC ECGLV+E ID EWR F + S + RVG P
Sbjct: 28 ESLCPECGGHTQLDAEH--GETVCEECGLVVEEDEIDHGPEWRAF-DASERDSKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I + A G LSSS L W R D R L A
Sbjct: 85 TTKMMHDKGLSTNIGWQDKDAYGNSLSSSQRQKMQRLRTWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + + LY A RQ + PR++ E+
Sbjct: 145 IDRMASALGLPKNVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQANNPRSLDEM 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ + E+ R YI+++LGLE + ++ RFCS L ++++ + A+
Sbjct: 205 THVSR-VERMELTRTYRYIIRELGLEVAPA------KPESYVPRFCSELSLSDETERRAR 257
Query: 232 EAVQ 235
E ++
Sbjct: 258 ELIE 261
>gi|402080319|gb|EJT75464.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 348
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 22/234 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + T + + S+GD VCSECGLV+ +D SEWRTFAN+ G +DP RVG +P
Sbjct: 23 CKDCDRPTALFEESSSGDLVCSECGLVVGDRIVDTRSEWRTFANDEGGDDPSRVGDAGDP 82
Query: 66 LLADGGLSTVIAKPNG--ASGEFLSSSLGRWQ--NRGSNPDR---GLILAFKTIATMSDR 118
+ DG L T I G ASG +GR N+ + DR GL +F I+ D+
Sbjct: 83 IWNDGSLETKIDTSRGQNASGRI----IGRLNNANKKTQNDRGQAGLQASFAKISEHVDK 138
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
L + D A ++K V+D K +G++ +A++A C++IACR + RT +EI ++ +
Sbjct: 139 LQGGKPVLDYARHLFKMVDDAKFLKGKSPEAVIAGCIFIACRANNVGRTFREIHALTS-V 197
Query: 179 TKKEIGR---AKEYIVKQLGLETGQSVEM-------GTIHAGDFMRRFCSNLGM 222
+KKEIGR + E VK+ T + G A + R+C++LG
Sbjct: 198 SKKEIGRVYKSLEDFVKRNPEATKNGLNAHADEDAKGPTPAEELCIRYCASLGF 251
>gi|326470967|gb|EGD94976.1| transcription initiation protein [Trichophyton tonsurans CBS
112818]
Length = 228
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 116/202 (57%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S N ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTENTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V +KK
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQTLE 219
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +E + G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + ACLY ACRQE PR+++E+ V
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR Y+ ++L L +M + ++ RF S L ++ + A E +
Sbjct: 204 SR-VEQKEIGRTYRYVAQELEL------KMEPVDPKQYVPRFASELELSEEVQSKANEII 256
Query: 235 QKSEE 239
+ E
Sbjct: 257 DTTAE 261
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +E + G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + ACLY ACRQE PR+++E+ V
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR Y+ ++L L +M + ++ RF S L ++ + A E +
Sbjct: 204 SR-VEQKEIGRTYRYVAQELEL------KMEPVDPKQYVPRFASELELSEEVQSKANEII 256
Query: 235 QKSEE 239
+ E
Sbjct: 257 DTTAE 261
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 20/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V + VC +CGLV+E +ID EWR F N S RVG P
Sbjct: 27 ERVCPECNSDS-LVRSEDQRELVCDDCGLVVEESNIDRGPEWRAF-NHSERQSKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G LS+ L +WQ R D R L A
Sbjct: 85 TTQAMHDKGLTTQIDWKNTDAYGRSLSADKRSQMRRLRKWQERIRTKDAGERNLQSALSE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I MS LG+ ++++ A+ +Y++ + RGR+ + + CLY ACRQE PR+++E+
Sbjct: 145 IDRMSSALGIPRSVREVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQEGIPRSLEEV 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ +KEIGR Y+ ++L S+E+ + +++ RFCS L ++ + +
Sbjct: 205 AEVSR-VERKEIGRTYRYVAQEL------SLELKPVDPQEYVPRFCSELDLSEEVTAKTR 257
Query: 232 EAVQKSEE 239
E +Q + E
Sbjct: 258 EIIQVTAE 265
>gi|157833927|pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib:
Dynamics And Interaction With Vp16 Activation Domain, 20
Structures
Length = 208
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 93/140 (66%), Gaps = 7/140 (5%)
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE
Sbjct: 4 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 63
Query: 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM 222
PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL +
Sbjct: 64 GVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCL 116
Query: 223 NNQAVKAAQEAVQKSEEFDI 242
Q AA +K+ E D+
Sbjct: 117 PKQVQMAATHIARKAVELDL 136
>gi|346978629|gb|EGY22081.1| transcription initiation factor IIB [Verticillium dahliae VdLs.17]
Length = 352
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DC++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD--RGLILAFKTIATMSDRLGL 121
NPLL L T IA G + +L R QN+ + + AF+ I+ +D + L
Sbjct: 90 NPLLDGAQLETSIAFSEGRDHK----NLARIQNKSQTDKNTKAIGSAFREISAFTDSINL 145
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A IYK D +G+ Q+AL+A C++IACRQ RT +EI V N +KK
Sbjct: 146 GKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFREIYQVTN-VSKK 204
Query: 182 EIGR 185
EIGR
Sbjct: 205 EIGR 208
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 130/251 (51%), Gaps = 21/251 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C ++V D G+TVC ECGLV+E SID EWR F N + ++ RVG P
Sbjct: 31 DIACPECSG--DLVVDEERGETVCGECGLVVEEDSIDRGPEWRAF-NATENDQKSRVGAP 87
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I N A G LS L +W R ++ +R L A
Sbjct: 88 TTNMMHDKGLSTNIGWQNKDAYGNSLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 147
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I MS LGL +++ A+ IY++ ++ GR+ + + + LY A RQ + PR++ E+
Sbjct: 148 IERMSSALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 207
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+V+ + EI R Y+V++LGLE + ++ RFCS L + ++ + A+
Sbjct: 208 ANVSR-VERDEIARTYRYVVRELGLEVAPT------DPASYVPRFCSELDLPDEVERRAR 260
Query: 232 EAVQKSEEFDI 242
E + +E+ I
Sbjct: 261 ELLTAAEDAGI 271
>gi|302412198|ref|XP_003003932.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
gi|261357837|gb|EEY20265.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
Length = 352
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGPT 63
C DC++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD--RGLILAFKTIATMSDRLGL 121
NPLL L T IA G + +L R QN+ + + AF+ I+ +D + L
Sbjct: 90 NPLLDGAQLETSIAFSEGRDHK----NLARIQNKSQTDKNTKAIGSAFREISAFTDSINL 145
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A IYK D +G+ Q+AL+A C++IACRQ RT +EI V N +KK
Sbjct: 146 GKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFREIYQVTN-VSKK 204
Query: 182 EIGR 185
EIGR
Sbjct: 205 EIGR 208
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC +CGLV+E +D EWR F N S RVG PT
Sbjct: 26 CPECGSKN-LVNSADQSELVCDDCGLVVEEDHVDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACRQE PR+++E+ V
Sbjct: 144 MASALGVPRSVREVASVIYRRALAEDLIRGRSIEGVATSTLYAACRQEGIPRSLEEVAEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS+LG++ + A E +
Sbjct: 204 SR-VDQKEIGRTYRYISQELGL------EMKPVDPKQYVPRFCSDLGVSEEVQSKANEII 256
Query: 235 QKSEE 239
+ E
Sbjct: 257 DTTAE 261
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALDLSEEVQAKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|146387163|pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib
Length = 206
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 93/140 (66%), Gaps = 7/140 (5%)
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE
Sbjct: 2 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 61
Query: 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM 222
PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL +
Sbjct: 62 GVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCL 114
Query: 223 NNQAVKAAQEAVQKSEEFDI 242
Q AA +K+ E D+
Sbjct: 115 PKQVQMAATHIARKAVELDL 134
>gi|326482199|gb|EGE06209.1| transcription initiation factor IIB [Trichophyton equinum CBS
127.97]
Length = 352
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 116/202 (57%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S N ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTENTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V +KK
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQNLE 219
>gi|145232671|ref|XP_001399760.1| transcription initiation factor IIB [Aspergillus niger CBS 513.88]
gi|134056679|emb|CAK37672.1| unnamed protein product [Aspergillus niger]
gi|358365509|dbj|GAA82131.1| transcription initiation protein [Aspergillus kawachii IFO 4308]
Length = 351
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 114/202 (56%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAM 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCDGFNI 140
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V T+K
Sbjct: 141 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 199
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 200 EIGRIYKALEK---FFTAQNLE 218
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALDLSEEVQAKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|70999680|ref|XP_754557.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|66852194|gb|EAL92519.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|159127570|gb|EDP52685.1| transcription initiation protein [Aspergillus fumigatus A1163]
Length = 422
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG T
Sbjct: 96 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 155
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 156 NPLLNGDQLETQIA--SGGSGR--ARELYRAQNKQSSEKANKALLAAYKEIGALCDGFNI 211
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++Q+ ++A C++IACRQ PRT EI +V T+K
Sbjct: 212 QKNVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 270
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 271 EIGRIYKALEK---FFTAQNLE 289
>gi|296824618|ref|XP_002850683.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
gi|238838237|gb|EEQ27899.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
Length = 352
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R QN+ S ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQNKMSTEKTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V +KK
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQNLE 219
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 23 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + + LY ACRQE PR++ E+ V
Sbjct: 141 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 200
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 201 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALELSEEVQAKATEII 253
Query: 235 QKSEE 239
S E
Sbjct: 254 DVSAE 258
>gi|119491805|ref|XP_001263397.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
gi|119411557|gb|EAW21500.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
Length = 350
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG T
Sbjct: 24 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 84 NPLLNGDQLETQIA--SGGSGR--ARELYRAQNKQSSEKANKALLAAYKEIGALCDGFNI 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++Q+ ++A C++IACRQ PRT EI +V T+K
Sbjct: 140 QKNVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 198
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 199 EIGRIYKALEK---FFTAQNLE 217
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C TE++ D+ + VC+ CGLV++ + +D EWR F +E D RVG P
Sbjct: 13 VCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPIT 70
Query: 65 PLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 71 YTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELD 130
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
S RLGL ++++ A+ +Y+ D K RGR+ + ++AA LY ACR+ + PRT+ EI
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ TKKE+GR ++ ++L ++++ D++ RF S LG++ +A A E
Sbjct: 191 VSR-VTKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEAQSRAIEI 243
Query: 234 VQKSEE 239
++K+ E
Sbjct: 244 IEKAME 249
>gi|350634612|gb|EHA22974.1| hypothetical protein ASPNIDRAFT_206867 [Aspergillus niger ATCC
1015]
Length = 351
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 114/202 (56%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG
Sbjct: 25 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAM 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCDGFNI 140
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V T+K
Sbjct: 141 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 199
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 200 EIGRIYKALEK---FFTAQNLE 218
>gi|269862647|ref|XP_002650920.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065412|gb|EED43136.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 310
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 8/191 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGLVA 123
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLTQ 128
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
TI D+A I+K VE +K +G+N + + AC+YIAC+ E PRT +EI SV K+EI
Sbjct: 129 TIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFQEI-SVITVVPKREI 187
Query: 184 GRAKEYIVKQL 194
G+ + I K++
Sbjct: 188 GKCYKLISKEM 198
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 125/245 (51%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S+L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASSLELSEEVQSKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|433590594|ref|YP_007280090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332002|ref|ZP_21521251.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384822|ref|ZP_21563557.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305374|gb|AGB31186.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445628140|gb|ELY81450.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445657826|gb|ELZ10650.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 319
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL + ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IVHDPDRGERVCEECGLVLNADPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + A LY ACR+ED PR+++E+ +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATASLYTACRKEDIPRSLEEVTA 199
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +LG + + + F+ RFCS L + A E
Sbjct: 200 VSR-VEQREIGRTYRYIADELG------INLEPTNPRQFVPRFCSELDVGTDVETKAVEI 252
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 253 IDRTTE 258
>gi|212526306|ref|XP_002143310.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
gi|210072708|gb|EEA26795.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
Length = 341
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 128/244 (52%), Gaps = 24/244 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 22 ICPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETS 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
N LL L T IA GA+G + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 82 NILLNGNQLETSIA--GGATGA--ARQLYRAQNKLSSEKNNKALMAAYKEIGALCDGFNI 137
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V ++K
Sbjct: 138 QKIVADTAKYLFKIVDDHKAFKGKSQDVIIAGCIFIACRQCQAPRTFSEIFAVTK-VSRK 196
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTI-------------HAGDFMRRFCSNLGMNNQAVK 228
EIGR + + K T Q++E + D RF S LG++ +
Sbjct: 197 EIGRIYKSLEKFF---TAQNIERTAVVGADAGFKQTTSTKPSDLCERFGSFLGLDYRTWH 253
Query: 229 AAQE 232
+A +
Sbjct: 254 SAAD 257
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ +C +CGLV+E +ID EWR F N RVG PT
Sbjct: 29 CPECASDN-LVKSSDRGELICDDCGLVVEEGNIDPGPEWRAF-NHQERQSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + A LY ACR+E PR+++EI V
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATAALYAACRKEGIPRSLEEISEV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 207 SR-VERKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELELSEEVQSKANEII 259
Query: 235 QKSEE 239
+ + E
Sbjct: 260 ETTAE 264
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALQLSEEVQSKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECSSDN-LVKSSDRAELVCEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A E +
Sbjct: 204 SR-VERKEIGRTYRYISQELGL------EMKPVDPKKYVPRFCSELELSEEVQSKANEII 256
Query: 235 QKSEE 239
+ + E
Sbjct: 257 ETTAE 261
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALQLSEEVQSKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|169770601|ref|XP_001819770.1| transcription initiation factor IIB [Aspergillus oryzae RIB40]
gi|238486960|ref|XP_002374718.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|83767629|dbj|BAE57768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699597|gb|EED55936.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|391867301|gb|EIT76547.1| transcription initiation factor TFIIB [Aspergillus oryzae 3.042]
Length = 350
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 24 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 84 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKSLLAAYKEIGALCDGFSI 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V ++K
Sbjct: 140 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VSRK 198
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 199 EIGRIYKALEK---FFTAQNLE 217
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 21/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + D S G+ +C +CGLV+E +ID EWR F N S RVG PT
Sbjct: 25 CPECDS-TAISTDGS-GELICEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ D+ RGR+ + + +CLY ACRQE PR+++E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATSCLYAACRQEGIPRSLEEVSDV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR Y+ ++L L +M + ++ RF S L ++ + A E +
Sbjct: 202 SR-VEQKEIGRTYRYVAQELKL------KMEPVDPKQYVPRFASELELSEEVQSKANEII 254
>gi|396491116|ref|XP_003843493.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
gi|312220072|emb|CBY00014.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
Length = 368
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 130/255 (50%), Gaps = 28/255 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DC++ +V + SAGDT+C CG VL ID SEWRTF+N+ G++DP R+G
Sbjct: 37 ICPDCQESPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDA 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLG 120
NPLL L+T I +G L R N+ ++ ++ L A+ I+T+ D
Sbjct: 97 ANPLLHGSQLATEIGFGDGG---LRVRELSRAHNKSNHDKANKALQAAYGQISTLCDSQN 153
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ T + A ++K +D K +G++QDA++A C++IACRQ + R+ +EI + N +K
Sbjct: 154 INKTTAETAKYLFKMTDDVKLFKGKSQDAIIAGCIFIACRQHRQQRSFREIFKMTN-VSK 212
Query: 181 KEIGRA----KEYIVKQLGLETGQSV----------------EMGTIHAGDFMRRFCSNL 220
KE+GR + Y+ K +TG +V E + A M R C+ L
Sbjct: 213 KEVGRTFKALEAYLQKTQKEKTGPTVAGNGAVMDTTNLLSTDENRSTSAAMLMPRACAKL 272
Query: 221 GMNNQAVKAAQEAVQ 235
G+ A++ +
Sbjct: 273 GLGTNVQIVAEQCAE 287
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CDECSDGT-LVTSEDQGELVCDQCGLVVEGSNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +S+ L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISADKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++E+ +V
Sbjct: 145 MASSLGIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR Y+ ++L S+EM + + RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYVAQEL------SLEMEPVDPKQYTPRFCSELDLSEEVQAKATEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 DTTTE 262
>gi|366996677|ref|XP_003678101.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
gi|342303972|emb|CCC71756.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
Length = 370
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 97
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G F + L R Q + D + AF I + D
Sbjct: 98 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 156
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK D++S +G++ ++++AA + I CR+ + RT KEI S+ + TK
Sbjct: 157 LPKIVKDCAKEAYKLCHDERSLKGKSTESIMAASILIGCRRAEVARTFKEIQSIIHVKTK 216
Query: 181 ---KEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
K +G K + ++ G + M ++ RFCS+LG+ Q AA+ +
Sbjct: 217 EFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAAEYTAK 276
Query: 236 KSEEFD 241
K +E +
Sbjct: 277 KCKEIE 282
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
VA ++EIGR YI +L + + + F+ RFCS L ++ A E
Sbjct: 200 VAR-VEQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVDTDVETKAIEI 252
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 253 IDRTTE 258
>gi|448298042|ref|ZP_21488075.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445592249|gb|ELY46438.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 296
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 125/246 (50%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 1 MCDECDGGT-LVKSEDQGELVCDQCGLIVEGANIDRGPEWRAF-NHSERQNKSRVGAPTT 58
Query: 65 PLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 59 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 118
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LG+ ++++ A +Y++ D+ RGR+ + + + LY ACR E PR+++E+ +
Sbjct: 119 RMASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAA 178
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ +KEIGR Y+ ++LGL EM ++ ++ RFCS L ++ + A E
Sbjct: 179 VSR-VERKEIGRTYRYVAQELGL------EMEPVNPKKYVPRFCSELELSEEVQVKANEI 231
Query: 234 VQKSEE 239
+ + E
Sbjct: 232 IDTTTE 237
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ VC +CGLV+E +ID EWR F N + RVG PT
Sbjct: 31 CPECDSEN-LVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 149 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 208
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A + +
Sbjct: 209 SR-VNRKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELTLSEEVQSKANDII 261
Query: 235 QKSEE 239
+ + E
Sbjct: 262 ETTAE 266
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPN 80
G+ + E G+VLE ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 46 GELIHEETGIVLEEERIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 164
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ D+ RGR+ + + ACLY ACR+E PR+++EI V+ +KEIGR Y+
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIAEVSR-VERKEIGRTYRYV 223
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 224 SQELGL------EMRPVDPKKYVPRFSSELDLSKEVQSKANEIIETTAE 266
>gi|433592681|ref|YP_007282177.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448335120|ref|ZP_21524272.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307461|gb|AGB33273.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618056|gb|ELY71640.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 321
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 20/243 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++E+
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+V+ +KEIGR YI ++LGL EM ++ ++ RFCS L ++ + A
Sbjct: 202 AAVSR-VERKEIGRTYRYIAQELGL------EMEPVNPKKYVPRFCSELELSEEVQVKAN 254
Query: 232 EAV 234
E +
Sbjct: 255 EII 257
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ VC +CGLV+E +ID EWR F N + RVG PT
Sbjct: 31 CPECDSEN-LVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 149 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 208
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L ++ + A + +
Sbjct: 209 SR-VNRKEIGRTYRYISQELGL------EMRPVDPKKYVPRFCSELTLSEEVQSKANDII 261
Query: 235 QKSEE 239
+ + E
Sbjct: 262 ETTAE 266
>gi|448384057|ref|ZP_21563055.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445659046|gb|ELZ11858.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 321
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 20/243 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++E+
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+V+ +KEIGR YI ++LGL EM ++ ++ RFCS L ++ + A
Sbjct: 202 AAVSR-VERKEIGRTYRYIAQELGL------EMEPVNPKKYVPRFCSELELSEEVQVKAN 254
Query: 232 EAV 234
E +
Sbjct: 255 EII 257
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D+ G+ VC +CGLV++ ID+ EWR F +E D+ R G P
Sbjct: 16 CPECG-STHLVRDYERGELVCMDCGLVIDESYIDQGPEWRAFDSEQRDSR-TRTGAPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R ++ +R L A + +
Sbjct: 74 TIHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
MS LGL +++ A IY+K + RGR+ + ++AA +Y ACR PRT++EI +V
Sbjct: 134 MSSNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEISTV 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
K+EIGR + + L L + D++ RFCS L ++ + K A E +
Sbjct: 194 TR-IKKREIGRVYRIMSRTLKLNIYPT------KPEDYIDRFCSKLKLSGEVKKKAYEII 246
Query: 235 QKSEEFDI 242
+ + E DI
Sbjct: 247 KMARERDI 254
>gi|327307312|ref|XP_003238347.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
gi|326458603|gb|EGD84056.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
Length = 352
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V +KK
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQNLE 219
>gi|365982759|ref|XP_003668213.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
gi|343766979|emb|CCD22970.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
Length = 400
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 97
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G F + L R Q + D + AF + + D
Sbjct: 98 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNIVDKKDNEVQAAFAKMTMLCDAAE 156
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK D+KS +G++ ++++AA + I CR+ + RT KEI S+ + TK
Sbjct: 157 LPKIVKDCAKEAYKLCHDEKSLKGKSSESIMAASILIGCRRAEVARTFKEIQSIIHVKTK 216
Query: 181 ---KEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
K +G K + ++ G + M ++ RFCS+LG+ Q AA+ +
Sbjct: 217 EFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAAEYTAK 276
Query: 236 KSEEFD 241
K +E +
Sbjct: 277 KCKEIE 282
>gi|339233058|ref|XP_003381646.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
gi|316979508|gb|EFV62300.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
Length = 1339
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 102/176 (57%), Gaps = 34/176 (19%)
Query: 9 CKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E++ DH AGD +C ECGLV+ +D +SEWR+F+++S DP RVG P N L
Sbjct: 6 CPAHPDAELIEDHRAGDMICMECGLVVGDRIVDVSSEWRSFSSDSNSKDPSRVGSPENNL 65
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIK 126
++ GGL+T IA G S E S SL Q R +
Sbjct: 66 MSGGGLATSIA--GGGSDE--SRSLSNLQKRQA--------------------------- 94
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
D+AN ++K+V++ K+ +G+N DA+ +ACLYIACR++ PRT KEIC+V+ +KKE
Sbjct: 95 DQANLLFKQVQETKALKGKNNDAVASACLYIACRKDGVPRTFKEICAVSK-LSKKE 149
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
VA ++EIGR YI +L + + + F+ RFCS L ++ A E
Sbjct: 200 VAR-VEQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVDTDVETKAIEI 252
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 253 IDRTTE 258
>gi|315055443|ref|XP_003177096.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
gi|311338942|gb|EFQ98144.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
Length = 352
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D +
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNI 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V +KK
Sbjct: 142 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKK 200
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 201 EIGRIYKALEKFF---TAQNLE 219
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC++CGLV+E ID EWR F N + RVG PT
Sbjct: 29 CPECGSDN-LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L + + A E +
Sbjct: 207 SR-VERKEIGRTYRYISQELGL------EMKPVDPKKYVPRFCSELELTEEVQSKANEII 259
Query: 235 QKSEE 239
+ + E
Sbjct: 260 ETTAE 264
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 27 CDECGGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSLSSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A +Y++ D+ RGR+ + + + LY ACR E PR+++E+ V
Sbjct: 145 MASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVSGV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR Y+ ++LGL EM ++ ++ RFCS L ++ + A E +
Sbjct: 205 SR-VERKEIGRTYRYVAQELGL------EMEPVNPKKYVPRFCSELELSEEVQAKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 DTTTE 262
>gi|302508303|ref|XP_003016112.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|302659336|ref|XP_003021359.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
gi|291179681|gb|EFE35467.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|291185255|gb|EFE40741.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
Length = 338
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 11/202 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +ND P RVG +
Sbjct: 12 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 70
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D +
Sbjct: 71 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCDGFNI 127
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QD ++A C++IACRQ PRT EI +V +KK
Sbjct: 128 QKNVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKK 186
Query: 182 EIGRAKEYIVKQLGLETGQSVE 203
EIGR + + K T Q++E
Sbjct: 187 EIGRIYKALEKFF---TAQNLE 205
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 131/247 (53%), Gaps = 19/247 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C +V DHS G+ C +CG+V+E +D EWR++ +E G R G P
Sbjct: 50 DGTCPECGS-PRLVTDHSRGEVFCQDCGIVVEDARLDYGPEWRSYDSERGMQR-ARAGPP 107
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTI 112
L D G +T I + G LS + L +WQ++ S+ +R L+ + +
Sbjct: 108 VVLTLHDKGFTTTIGNDRDSHGNPLSPKTRIQFTRLRKWQSKIRTNSSAERNLVRSLMEL 167
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
++ LGL +I +RA IY++V +RGR D+++AA +Y ACR+ PRT+ E+
Sbjct: 168 ERITSSLGLPKSITERAALIYRRVVSNNLTRGRCIDSIVAAAVYAACREAGLPRTLDEVA 227
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+ ++ K+ +GRA ++ + LGL+ I + D++ + C+ LG++ + + A E
Sbjct: 228 AHSS-VDKRSVGRAYRFLARTLGLKPAP------ITSTDYVPKICAALGVSGEVQERALE 280
Query: 233 AVQKSEE 239
V ++E+
Sbjct: 281 IVNEAEK 287
>gi|255721725|ref|XP_002545797.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240136286|gb|EER35839.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 347
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 13/250 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG +
Sbjct: 23 CPDCKLFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNSDDPSRVGEAS 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGL 121
N L L+T+I+ G ++L + Q + + L A++ I+ + + L
Sbjct: 83 NSLYDTEDLTTMISYTANPGGSGSKNNLNKIQQKSLVDKKNYALQAAYQRISELCNGYQL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
++ D A +YK V D + +G++QDA++A+ + + CR+ + PRT++EI ++ N TK+
Sbjct: 143 PKSVSDAAKHLYKAVRDDRLLKGKSQDAIMASTILLGCRRAEVPRTLEEIRALTNVPTKQ 202
Query: 182 --EIGR-AKEYIVKQLGLE------TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+I R K+ I L + ++ + T A D +RRFCS+LG+N ++
Sbjct: 203 IAKITRLIKKIIHSHLNSDDAAAAIVDETTNLTTHSAEDLIRRFCSHLGLNPIITNGSEY 262
Query: 233 AVQKSEEFDI 242
+K E I
Sbjct: 263 IARKCNELGI 272
>gi|451847728|gb|EMD61035.1| hypothetical protein COCSADRAFT_39743 [Cochliobolus sativus ND90Pr]
Length = 366
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 130/262 (49%), Gaps = 29/262 (11%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + SAGDT+C CG VL ID SEWRTF+N+ G++DP R+G
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDA 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRL 119
NPLL L T I +G L R N+ SN D+ L A+ I + D
Sbjct: 97 ANPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYGQITALCDSQ 152
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
+ + A +YK +D K +G++QDA++A C++IACR+ D+ R+ +EI + N +
Sbjct: 153 NISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMTN-VS 211
Query: 180 KKEIGRAKEYI--VKQLGLETGQSVE-----MGTIH------------AGDFMRRFCSNL 220
KKE+GR + + Q +G SV + T++ A M R C+ L
Sbjct: 212 KKEVGRTFKVLEAFIQKSQNSGPSVAGNGAVIDTVNLLNQKGGTTATSAASLMPRACAKL 271
Query: 221 GMNNQAVKAAQEAVQKSEEFDI 242
+ Q A+E + + +
Sbjct: 272 ALGTQVQMVAEECADQVAHYGV 293
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
VA ++EIGR YI +L + + + F+ RFCS L + A E
Sbjct: 200 VAR-VEQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVGTDVETKAIEI 252
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 253 IDRTTE 258
>gi|388583858|gb|EIM24159.1| TFIIB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 336
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 139/231 (60%), Gaps = 18/231 (7%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + VV + S+GD VC +CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 19 ICPECQIPNPNVVEEFSSGDLVCGDCGLVLGDKVVDTRSEWRTFANDEGD-DPSRVGAAN 77
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRL 119
NPLL DG T+I+ +G +G +S L R + S+ +RGL+ AF+ I++M+D++
Sbjct: 78 NPLL-DGVDEFETMISSRDGNTG--ISRELQRATAKSSHGRSERGLLNAFRDISSMADQI 134
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L +I D A ++YK+V+++K RG++ DA++AAC++IACRQ PRT KE+ +
Sbjct: 135 SLPRSIADIAKQLYKRVDEEKLLRGKSTDAIIAACIFIACRQAGVPRTFKEVWGLTR-VP 193
Query: 180 KKEIGRAKEYIVKQLGLETGQ------SVEMGTIHAG--DFMRRFCSNLGM 222
KK IG+ + + + G + + + I +G D M R+C++L +
Sbjct: 194 KKVIGQCFKVLERAFGSNSPSMTPGVDTPTLNNIQSGPEDLMARYCNHLNL 244
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 118/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPN 80
G+ + E G+VLE ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 46 GELIHEETGIVLEEDRIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A + M+ LG+ ++++ A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 164
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ D+ RGR+ + + ACLY ACR+E PR+++EI V+ +KEIGR Y+
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIAEVSR-VERKEIGRTYRYV 223
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 224 SQELGL------EMRPVDPKKYVPRFSSELDLSKEVQSKANEIIETTAE 266
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ DQ RGR+ + + + LY ACR+ED PR+++E+ S
Sbjct: 138 RMVSALGVPRPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L + + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVGKEVETKAVEI 250
Query: 234 VQKSEE 239
+ + E
Sbjct: 251 IDTTTE 256
>gi|347975957|ref|XP_003437308.1| unnamed protein product [Podospora anserina S mat+]
gi|170940166|emb|CAP65393.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 131/243 (53%), Gaps = 36/243 (14%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C++CK+ ++ + S+GD VC CGLVL ID SEWRTF+N+ G++DP RVG
Sbjct: 25 MCAECKEFPPNLIEEFSSGDMVCESCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRL 119
N ++ L T IA +G + LS QN+ +N D+G L+ A++ I + +D +
Sbjct: 85 PNLMIDGDQLQTTIAF-DGKGAKNLS----HLQNKMTN-DKGSKQLLNAYRDIQSFTDSI 138
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
+ + A IYK V+D K+ +G++Q+A++A C++IACRQ + RT +EI + +
Sbjct: 139 NTGTQVANAAKHIYKLVDDAKALKGKSQEAIIAGCIFIACRQANADRTFREIYRLTK-VS 197
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGT---IHAGDFMR---------------RFCSNLG 221
KKEIGR + KQ LET G AG F + R+CSN+G
Sbjct: 198 KKEIGR----VFKQ--LETFLQKAGGADDITKAGPFNQTYQAKASTTAVGLCARYCSNMG 251
Query: 222 MNN 224
N
Sbjct: 252 FRN 254
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 121/244 (49%), Gaps = 20/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N N+ RVG P
Sbjct: 20 LCPDCETET-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHNELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ +
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELNVDKDVETKAVEI 250
Query: 234 VQKS 237
+ ++
Sbjct: 251 IDQT 254
>gi|410084090|ref|XP_003959622.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
gi|372466214|emb|CCF60487.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
Length = 355
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 128/246 (52%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +C+ + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 24 CPECRVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + G F + L R Q N D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK D+KS +G++ ++++AA + I CR+ RT KEI S+ + TK
Sbjct: 142 LPKIVKDCAKEAYKLCHDEKSLKGKSTESIMAASILIGCRRAQVARTFKEIQSIIHVKTK 201
Query: 181 ---KEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
K +G K + ++ G + M ++ RFCS+LG+ Q A++ +
Sbjct: 202 EFGKTLGIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTASEYTAK 261
Query: 236 KSEEFD 241
K +E +
Sbjct: 262 KCKEIE 267
>gi|448323082|ref|ZP_21512547.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445600711|gb|ELY54717.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 319
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 21 ALCPDCETET-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 78
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTI 112
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 79 TQSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 138
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+
Sbjct: 139 DRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVT 198
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+V+ ++EIGR YI +L + + + F+ RFCS L ++ A E
Sbjct: 199 AVSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVDTHVESKAIE 251
Query: 233 AVQKS 237
+ ++
Sbjct: 252 IIDET 256
>gi|268324098|emb|CBH37686.1| transcription initiation factor IIB [uncultured archaeon]
gi|268326415|emb|CBH40003.1| transcription initiation factor IIB [uncultured archaeon]
Length = 319
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 124/237 (52%), Gaps = 9/237 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + C++CGLV+ + +D EWR F +E RVG P
Sbjct: 34 CPECGSKN-LVRDYGKAELFCADCGLVIAENIVDLGPEWRAFDSEQASKR-ARVGAPMTY 91
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
+ D GLST++ + G++ +W + + +R I A I M+ L L I
Sbjct: 92 RIHDKGLSTLVTWSSPGQGQYKLKKRQQWTHIANTTERSFIFALSEIDRMASALRLPINI 151
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
++ A+ +Y+K + RGR+ + + +A LY++CRQ PRT++E+ V+ +KEI R
Sbjct: 152 REAASMLYRKAMKKHLIRGRSIEGITSAILYVSCRQYGVPRTLEEVRDVSR-VGQKEISR 210
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
A +++++L L+ + + DF+ RFCS L ++ + A E ++K+ E ++
Sbjct: 211 AYRFLLRELDLKVTPASPV------DFVPRFCSQLDLSGEIRSKAVEIIKKASEAEL 261
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 130/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +++D+ G+ VC +CG V+E ID+ EWR F E D R G P
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N S G+ + + +W R + +R L +A + +
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+S ++GL +++ A IY+K ++ RGR+ ++++AA +Y ACR+ PRT+ E+
Sbjct: 135 VSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAK- 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A+ KK+IGRA ++ K+L L + A ++ +FCS L ++ V A+E V
Sbjct: 194 ASELNKKKIGRAYRHLTKELNLNLKPTT------ANSYITQFCSKLRLDKNVVNKAEEIV 247
Query: 235 QKSEEFDI 242
QK+ + I
Sbjct: 248 QKATDVGI 255
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVGKDVETKAVEI 250
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 251 IDQTTE 256
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 121/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V + C +CGLVLE ID EWR F N+S + RVG PT
Sbjct: 27 CPECE-STALVRSSDGSEVSCEDCGLVLEEEGIDRGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRTQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ E+ +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI ++LGL EM + ++ RFCS L + + A E +
Sbjct: 205 SR-VDRMEIGRTYRYISQELGL------EMEPVDPKKYVPRFCSELDLPEEVQLKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 TTTAE 262
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSAEKQGQIHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ ++ RGR+ + + + LY ACR+ED PR+++E+ S
Sbjct: 138 RMVSALGVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +LG + + + F+ RFCS L + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADELG------INLEPTNPRQFVPRFCSELDVGKDVETKAVEI 250
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 251 IDETTE 256
>gi|429191039|ref|YP_007176717.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448327395|ref|ZP_21516723.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
gi|429135257|gb|AFZ72268.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445608493|gb|ELY62332.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
Length = 326
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C H +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DVTCPECTGH--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A RQ PR++ EI
Sbjct: 145 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRAR 257
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 258 ALLQNAKE 265
>gi|403214076|emb|CCK68577.1| hypothetical protein KNAG_0B01300 [Kazachstania naganishii CBS
8797]
Length = 369
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 127/246 (51%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHTEVVFDHSA-GDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + + + A GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 37 CPECKVYPPKIVERFAEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 95
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I + F + L R Q + D + AF I +SD
Sbjct: 96 SNPLLDGNNLSTRIGQGENTDMRF-TKELNRAQGKNVVDKKDNEVHAAFAKITMLSDAAE 154
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK D+KS +G++ ++++AA + I CR+ + RT KEI S+ + TK
Sbjct: 155 LPKIVKDCAKEAYKLCHDEKSLKGKSTESIIAASILIGCRRAEVARTFKEIQSIIHVKTK 214
Query: 181 ---KEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
K + K + ++ G + M ++ RFCS+LG+ Q AA+ +
Sbjct: 215 EFSKTLSIMKGILREKSSDGFIKINTDNMSGAQNLTYIPRFCSHLGLPMQVTTAAEYTAK 274
Query: 236 KSEEFD 241
K +E +
Sbjct: 275 KCKEIE 280
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S+L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASSLQLSEEVQSKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|448320031|ref|ZP_21509519.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445606437|gb|ELY60341.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 326
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + S N+ RVG P
Sbjct: 28 DVVCPECTGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DASEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRAR 257
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 258 GLLQNAKE 265
>gi|448299195|ref|ZP_21489208.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
gi|445588729|gb|ELY42971.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
Length = 326
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C H +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLACPECTGH--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A RQ PR++ EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRAR 257
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 258 GLLQNAKE 265
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S+L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELRPVDPKQFVPRFASSLQLSEEVQSKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|448366242|ref|ZP_21554496.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445654851|gb|ELZ07702.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 326
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 126/249 (50%), Gaps = 21/249 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ E
Sbjct: 144 EIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDE 203
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ K EI R Y+V++LGLE + ++ RF S L ++++A A
Sbjct: 204 IADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRA 256
Query: 231 QEAVQKSEE 239
+ +Q ++E
Sbjct: 257 RALLQNAKE 265
>gi|156844090|ref|XP_001645109.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156115766|gb|EDO17251.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 357
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 123/246 (50%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 26 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I + F + L R Q N D + AF I + D L
Sbjct: 86 NPLLDGNNLSTRIGQGESTDVRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAEL 144
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+KS RG++ ++++AA + I CR+ RT KEI S+ + T K
Sbjct: 145 PKIVKDCAKEAYKLCHDEKSLRGKSSESIMAASILIGCRRASVARTFKEIQSIIHVKT-K 203
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+
Sbjct: 204 EFGKTLAIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAA 263
Query: 236 KSEEFD 241
K +E +
Sbjct: 264 KCKEIE 269
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECDSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + + LY A R D PR++ EI SV
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEITSV 199
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L L E+ ++ RF S LG+++++ + A++ +
Sbjct: 200 SR-VEKDEIARTYRYVVRELKL------EIKPADPEQYVPRFASELGLSDESERRARQLL 252
Query: 235 QKSEE 239
+ ++E
Sbjct: 253 KNAKE 257
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V + C +CGL+LE ID EWR F N+S + RVG PT
Sbjct: 27 CPECE-STALVRSSDGSEVSCEDCGLILEEEGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRSQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ E+ +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI ++LGL EM + ++ RFCS L + + A E +
Sbjct: 205 SR-VDRMEIGRTYRYISQELGL------EMEPVDPKKYVPRFCSELDLPEEVQLKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 TTTAE 262
>gi|241958734|ref|XP_002422086.1| general transcription facto TFIIB, putative; transcription
initiation factor IIB, putative [Candida dubliniensis
CD36]
gi|223645431|emb|CAX40087.1| general transcription facto TFIIB, putative [Candida dubliniensis
CD36]
Length = 346
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 13/251 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C DCK+ ++V S GD +C +CGLVL +D SEWRTF N+ + +DP RVG
Sbjct: 21 ICPDCKQFPPDLVERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+N L + L+T+I+ ++ ++L + Q + + L A++ I+ + +
Sbjct: 81 SNSLYDNEDLTTMISYAPNSNSSGSKNNLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A +YK V + + +G+ QD+++AA + + CR+ D PRT++EI ++ N TK
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAAAILLGCRRADVPRTLEEIRALTNVPTK 200
Query: 181 ---KEIGRAKEYIVKQLGLE------TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
K G K+ I L E ++ + T A D +RRFCS+LG++ A++
Sbjct: 201 QIAKVTGLIKKIIRSHLNNEDASTSIVDETSSLTTHSAEDLIRRFCSHLGLSLTITSASE 260
Query: 232 EAVQKSEEFDI 242
+K + +
Sbjct: 261 YVARKCHDLGV 271
>gi|366998229|ref|XP_003683851.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
gi|357522146|emb|CCE61417.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 122/246 (49%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 24 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAA 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I + F + L R Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGQGESTDMRF-TKELNRAQGKNVMDKKDHEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+KS RG++ ++++AA + I CR+ RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKSLRGKSSESVMAASILIGCRRASVARTFKEIQSIIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+
Sbjct: 202 EFGKTLAIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAA 261
Query: 236 KSEEFD 241
K +E +
Sbjct: 262 KCKEIE 267
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 20/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVGKDVETKAVEI 250
Query: 234 VQKS 237
+ ++
Sbjct: 251 IDRT 254
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 26 LCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 83
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 84 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 143
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ Q RGR+ + + + LY ACR+ED PR+++E+ +
Sbjct: 144 RMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 203
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +LG + + + F+ RFCS L ++ A +
Sbjct: 204 VSR-VDQREIGRTYRYIADELG------INLEPTNPRQFVPRFCSELDVDKDVETKAIDI 256
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 257 IDETTE 262
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 43 LCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 100
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 101 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 160
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ Q RGR+ + + + LY ACR+ED PR+++E+ +
Sbjct: 161 RMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 220
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +LG + + + F+ RFCS L ++ A +
Sbjct: 221 VSR-VDQREIGRTYRYIADELG------INLEPTNPRQFVPRFCSELDVDKDVETKAIDI 273
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 274 IDETTE 279
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + + LY A R D PR++ EI SV
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEITSV 199
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L L E+ ++ RF S+LG+++++ + A++ +
Sbjct: 200 SR-VEKDEIARTYRYVVRELKL------EIKPADPEQYVPRFASDLGLSDESERRARQLL 252
Query: 235 QKSEE 239
+ ++E
Sbjct: 253 KNAKE 257
>gi|448347239|ref|ZP_21536116.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445631076|gb|ELY84319.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 296
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 1 MCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTT 58
Query: 65 PLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 59 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 118
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++E+ +
Sbjct: 119 RMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAA 178
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ +KEIGR Y+ ++L L EM ++ ++ RFCS L ++ + A E
Sbjct: 179 VSR-VERKEIGRTYRYVAQELNL------EMEPVNPKKYVPRFCSELELSEEVQVKANEI 231
Query: 234 VQKSEE 239
+ + E
Sbjct: 232 IDTTTE 237
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IVHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 199
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ A +
Sbjct: 200 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVDKDVETKAIDI 252
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 253 IDRTTE 258
>gi|433592506|ref|YP_007282002.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334943|ref|ZP_21524096.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384407|ref|ZP_21563245.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433307286|gb|AGB33098.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618184|gb|ELY71763.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445658473|gb|ELZ11291.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 326
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRAR 257
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 258 SLLQNAKE 265
>gi|448327577|ref|ZP_21516901.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445617824|gb|ELY71416.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 327
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 29 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 86 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 145
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 146 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 205
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 206 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRAR 258
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 259 SLLQNAKE 266
>gi|397775888|ref|YP_006543434.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342843|ref|ZP_21531788.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397684981|gb|AFO59358.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445624676|gb|ELY78052.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRAR 257
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 258 SLLQNAKE 265
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 130/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +++D+ G+ VC +CG V+E ID+ EWR F E D R G P
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N S G+ + + +W R + +R L +A + +
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+S ++GL +++ A IY+K ++ RGR+ ++++AA +Y ACR+ PRT+ E+
Sbjct: 135 VSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAK- 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A+ KK+IGRA ++ K+L L + A ++ +FCS L ++ V A+E V
Sbjct: 194 ASELNKKKIGRAYRHLTKELNL------NLKPTTATSYITQFCSKLHLDKNVVNKAEEIV 247
Query: 235 QKSEEFDI 242
Q++ E I
Sbjct: 248 QQATERGI 255
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ ++ RGR+ + + A LY ACRQE PR++ E+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A E +
Sbjct: 202 SR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALQLSEEVQSKATEII 254
Query: 235 QKSEE 239
S E
Sbjct: 255 DVSAE 259
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECGSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + + LY A R D PR++ EI SV
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEITSV 199
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L L E+ ++ RF S LG+++++ + A++ +
Sbjct: 200 SR-VEKDEIARTYRYVVRELKL------EIKPADPEQYVPRFASELGLSDESERRARQLL 252
Query: 235 QKSEE 239
+ ++E
Sbjct: 253 KNAKE 257
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 20/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++E+
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+V+ +KEIGR Y+ ++L L EM ++ ++ RFCS L ++ + A
Sbjct: 202 AAVSR-VERKEIGRTYRYVAQELNL------EMEPVNPKKYVPRFCSELELSEEVQVKAN 254
Query: 232 EAVQKSEE 239
E + + E
Sbjct: 255 EIIDTTTE 262
>gi|357116817|ref|XP_003560173.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 331
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 135/275 (49%), Gaps = 44/275 (16%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE----SGDNDPVRVG 60
+C C++ T V D TVC+EC LVL +DE+ EWRTF N ++ RV
Sbjct: 10 YCKGCRRVTAVTVD-----TVCTECSLVLNERYVDESLEWRTFLNHGTPAEAEDSSSRV- 63
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILA------------ 108
+ L + L T ++ P + + ++L R + G+
Sbjct: 64 --DDHFLTNLQLGTGVSGPAASGNAQMKTALPRMRGAGAGGSGVATAKTRGAAAAASDRA 121
Query: 109 ----FKTIATMSDRLGLVATIKDRANEIYKKVEDQKS----SRGRNQDALLAACLYIACR 160
F + M+++LGL +KDRA E+ +K+E K+ + RN+ AL AACL++ACR
Sbjct: 122 LADAFHAMDGMAEQLGLATAVKDRAKEVLRKLEVAKAFPKGGKCRNRRALYAACLHMACR 181
Query: 161 QEDKPRTVKEICSVANG---ATKKEIGRAKEYIVKQLGLE-------TGQSVEMGTI-HA 209
E PRT KE+ SV A K+IGR ++I LG + ++E G I A
Sbjct: 182 DEGTPRTFKELASVTGDSVTAGTKDIGRLVKHIKNHLGDQDQDAEGMQATALEKGAIVRA 241
Query: 210 GDFMRRFCSNLGMNNQAVKAAQEAVQKSE-EFDIR 243
GD++ RF LGM + + AAQEA ++ E + D+R
Sbjct: 242 GDYLCRFGLQLGMGQEELHAAQEAARRLEKDLDVR 276
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 124/248 (50%), Gaps = 20/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++E+
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+V+ +KEIGR Y+ ++L L EM ++ ++ RFCS L ++ + A
Sbjct: 202 AAVSR-VERKEIGRTYRYVAQELNL------EMEPVNPKKYVPRFCSELELSEEVQVKAN 254
Query: 232 EAVQKSEE 239
E + + E
Sbjct: 255 EIIDTTTE 262
>gi|6325343|ref|NP_015411.1| Sua7p [Saccharomyces cerevisiae S288c]
gi|135633|sp|P29055.1|TF2B_YEAST RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=Transcription factor E
gi|269914562|pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|414145458|pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145471|pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172777|gb|AAA35126.1| Sua7 [Saccharomyces cerevisiae]
gi|1230692|gb|AAB68135.1| Sua7p: Transcription initiation factor IIB (Swiss Prot. accession
number P29055) [Saccharomyces cerevisiae]
gi|285815612|tpg|DAA11504.1| TPA: Sua7p [Saccharomyces cerevisiae S288c]
gi|392296094|gb|EIW07197.1| Sua7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 345
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+ +
Sbjct: 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261
Query: 236 KSEEF 240
K +E
Sbjct: 262 KCKEI 266
>gi|151942867|gb|EDN61213.1| TFIIB [Saccharomyces cerevisiae YJM789]
gi|190408019|gb|EDV11284.1| transcription initiation factor IIB [Saccharomyces cerevisiae
RM11-1a]
gi|256272187|gb|EEU07182.1| Sua7p [Saccharomyces cerevisiae JAY291]
gi|259150239|emb|CAY87042.1| Sua7p [Saccharomyces cerevisiae EC1118]
gi|323306830|gb|EGA60115.1| Sua7p [Saccharomyces cerevisiae FostersO]
gi|323331334|gb|EGA72752.1| Sua7p [Saccharomyces cerevisiae AWRI796]
gi|323335165|gb|EGA76455.1| Sua7p [Saccharomyces cerevisiae Vin13]
gi|323346315|gb|EGA80605.1| Sua7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323350223|gb|EGA84370.1| Sua7p [Saccharomyces cerevisiae VL3]
gi|349581892|dbj|GAA27049.1| K7_Sua7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762560|gb|EHN04094.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 345
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+ +
Sbjct: 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261
Query: 236 KSEEF 240
K +E
Sbjct: 262 KCKEI 266
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ +C +CGLV+E +ID EWR F N + RVG PT
Sbjct: 27 CPECDSEN-LVKSADRGELICEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 84
Query: 66 LLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 145 MASALGVPRSVREVASVIYRRSLAEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR Y+ ++L L EM + ++ RFCS L ++ + A + +
Sbjct: 205 SR-VNRKEIGRTYRYVSQELAL------EMRPVDPKKYVPRFCSELTLSEEVQSKANDII 257
Query: 235 QKSEE 239
+ + E
Sbjct: 258 ETTAE 262
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V D G+TVC +CGLV+E + ID EWR F N + N RVG PT
Sbjct: 19 CPECESES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSTEKNQKSRVGAPTTN 76
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 136
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + + LY A R D PR++ EI SV
Sbjct: 137 MASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEITSV 196
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L L E+ ++ RF S LG++++ + A++ +
Sbjct: 197 SR-VEKDEIARTYRYVVRELKL------EIKPADPEQYVPRFASELGLSDEPERRARQLL 249
Query: 235 QKSEEFDI 242
+ ++E +
Sbjct: 250 KNAKEQSV 257
>gi|444317851|ref|XP_004179583.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
gi|387512624|emb|CCH60064.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
Length = 357
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 10/244 (4%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + + + S GD VC+ CGLVL ID SEWRTF+N+ + +DP RVG +
Sbjct: 28 CPECKVYPPKIIERFSEGDVVCALCGLVLSDKLIDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I + F + L R Q + D + AF I + D L
Sbjct: 88 NPLLDGNNLSTRIGQGETTDSRF-TKELNRAQGKNIVDKKDNEVQSAFAKITMLCDAAEL 146
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK- 180
+KD A E YK D+KS +G++ ++++AA + I CR+ RT KEI S+ + TK
Sbjct: 147 PKIVKDCAKEAYKLCNDEKSLKGKSTESVMAASILIGCRRAQVARTFKEIQSIIHVKTKE 206
Query: 181 --KEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK 236
K +G K + ++ G+ + M ++ RFCS+LG+ Q +A+ +K
Sbjct: 207 FGKTLGIMKGILREKSADGVIKIDTDNMSGAQNVTYIPRFCSHLGLPMQVTTSAEYTAKK 266
Query: 237 SEEF 240
+E
Sbjct: 267 CKEI 270
>gi|51013915|gb|AAT93251.1| YPR086W [Saccharomyces cerevisiae]
Length = 345
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+ +
Sbjct: 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261
Query: 236 KSEEF 240
K +E
Sbjct: 262 KCKEI 266
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 125/248 (50%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+TVC +CGLV+E + ID EWR F N S N RVG PT
Sbjct: 19 CPECESDA-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKNQKSRVGAPTTN 76
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 136
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + + LY A R D PR++ EI SV
Sbjct: 137 MASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMADTPRSLDEITSV 196
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L L E+ ++ RF S LG++++ + A++ +
Sbjct: 197 SR-VEKDEIARTYRYVVRELKL------EIKPADPEQYVPRFASELGLSDEPERRARQLL 249
Query: 235 QKSEEFDI 242
+ ++E +
Sbjct: 250 KNAKEQSV 257
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D+ G+ VC +CGLV++ ID+ EWR F +E D+ R G P
Sbjct: 16 CPECG-STHLVRDYERGELVCMDCGLVIDEAYIDQGPEWRAFDSEQRDSRS-RTGAPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R ++ +R L A + +
Sbjct: 74 TIHDKGLSTEISWKNKDSYGKSIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A IY+K + RGR+ + ++AA +Y ACR PRT++EI +V
Sbjct: 134 MASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEISTV 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
K+EIGR + + L L + D++ RFCS L ++ + A E +
Sbjct: 194 TR-IKKREIGRVYRIMSRTLKLNIYPT------KPEDYIDRFCSKLKLSGEVKTKAYEII 246
Query: 235 QKSEEFDI 242
+ + E DI
Sbjct: 247 KMARERDI 254
>gi|207340326|gb|EDZ68710.1| YPR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 331
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 10 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 69
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 70 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 128
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 129 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 187
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+ +
Sbjct: 188 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 247
Query: 236 KSEEF 240
K +E
Sbjct: 248 KCKEI 252
>gi|401842172|gb|EJT44429.1| SUA7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 345
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVHAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+ +
Sbjct: 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261
Query: 236 KSEEF 240
K +E
Sbjct: 262 KCKEI 266
>gi|448355065|ref|ZP_21543819.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448360186|ref|ZP_21548828.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445636409|gb|ELY89571.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445640136|gb|ELY93226.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 326
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRAR 257
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 258 ALLQNAKE 265
>gi|448311268|ref|ZP_21501032.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445605096|gb|ELY59027.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 329
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 31 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAP 87
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 88 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 147
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 208 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRAR 260
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 261 ALLQNAKE 268
>gi|448363683|ref|ZP_21552280.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445645786|gb|ELY98783.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 326
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 126/249 (50%), Gaps = 21/249 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ +GL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ E
Sbjct: 144 EIDRMASAVGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDE 203
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ K EI R Y+V++LGLE + ++ RF S L ++++A A
Sbjct: 204 IADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRA 256
Query: 231 QEAVQKSEE 239
+ +Q ++E
Sbjct: 257 RALLQNAKE 265
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPN 80
+ VC +CGLV+E ID EWR F N RVG PT + D GL+T I K
Sbjct: 8 AELVCDDCGLVVEEERIDPGPEWRAF-NHQERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 66
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 67 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 126
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ + RGR+ + + + LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 127 VIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 185
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RFCS L ++ + A ++ + E
Sbjct: 186 SQELGL------EMKPVDPKKYVPRFCSELELSEEVQSKANNIIETTAE 228
>gi|401623146|gb|EJS41253.1| sua7p [Saccharomyces arboricola H-6]
Length = 345
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+ +
Sbjct: 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261
Query: 236 KSEEF 240
K +E
Sbjct: 262 KCKEI 266
>gi|289582455|ref|YP_003480921.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448282123|ref|ZP_21473413.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532008|gb|ADD06359.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577053|gb|ELY31498.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 326
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGL E+ ++ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGL------EVQPADPESYVPRFASGLDLSDEAEHRAR 257
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 258 ALLQNAKE 265
>gi|448330751|ref|ZP_21520030.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445611255|gb|ELY65015.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 321
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 26 VCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTT 83
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 84 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 143
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ L + ++++ A IY++ D+ RGR+ + + + LY ACR E PR+++E+ +
Sbjct: 144 RMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAA 203
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ +KEIGR Y+ ++L L EM ++ ++ RFCS L ++ + A E
Sbjct: 204 VSR-VERKEIGRTYRYVAQELNL------EMEPVNPKKYVPRFCSELELSEEVQVKANEI 256
Query: 234 VQKSEE 239
+ + E
Sbjct: 257 IDVTTE 262
>gi|448338899|ref|ZP_21527933.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448344427|ref|ZP_21533338.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445621222|gb|ELY74700.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445638546|gb|ELY91674.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRAR 257
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 258 SLLQNAKE 265
>gi|451996801|gb|EMD89267.1| hypothetical protein COCHEDRAFT_1205430 [Cochliobolus
heterostrophus C5]
Length = 375
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 130/271 (47%), Gaps = 38/271 (14%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE----------SGD 53
C DCK++ +V + SAGDT+C CG VL ID SEWRTF+N+ G+
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDGKWRPLTCTNQGN 96
Query: 54 NDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFK 110
+DP R+G NPLL L T I +G L R N+ SN D+ L A+
Sbjct: 97 DDPSRIGDAANPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYG 152
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I + D + + A +YK +D K +G++QDA++A C++IACR+ D+ R+ +E
Sbjct: 153 QITALCDSQNISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFRE 212
Query: 171 ICSVANGATKKEIGRAKEYI--VKQLGLETGQSVE-----MGTIH------------AGD 211
I + N +KKE+GR + + Q +G SV + T++ A
Sbjct: 213 IFKMTN-VSKKEVGRTFKVLEAFIQKSQNSGPSVAGNGAVIDTVNLLNQKGGTTATSAAS 271
Query: 212 FMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
M R C+ L + Q A+E + + +
Sbjct: 272 LMPRACAKLALGTQVQMVAEECADQVAHYGV 302
>gi|365757889|gb|EHM99760.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 352
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVHAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+ +
Sbjct: 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261
Query: 236 KSEEF 240
K +E
Sbjct: 262 KCKEI 266
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 20/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ +
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVDKDVETKAVEI 250
Query: 234 VQKS 237
+ ++
Sbjct: 251 IDET 254
>gi|50292269|ref|XP_448567.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527879|emb|CAG61530.1| unnamed protein product [Candida glabrata]
Length = 363
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 10/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 25 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I + F + L R Q + D + AF I + D L
Sbjct: 85 NPLLDGNNLSTKIGQGETTDMRF-TKELNRAQGKNVLDKKDNEIQAAFAKITMLCDASEL 143
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK- 180
+KD A E YK D+K+ +G++ ++++AA + + CR+ + RT KEI S+ + TK
Sbjct: 144 PKIVKDCAKEAYKLCHDEKALKGKSSESIMAASILLGCRRAEVARTFKEIQSIIHVKTKE 203
Query: 181 --KEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK 236
K +G K + ++ G + M ++ RFCS+LG+ Q +A+ +K
Sbjct: 204 FGKTLGIMKNILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKK 263
Query: 237 SEEFD 241
+E +
Sbjct: 264 CKEIE 268
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 44 CPECQSE-KLINDHERGEIVCGSCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 101
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 102 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 161
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ EI V
Sbjct: 162 DSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEV 221
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KKE+GR ++ ++L ++++ D++ RF S L ++ + A E +
Sbjct: 222 SR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELNLSGEVQSKAIEII 274
Query: 235 QKSEE 239
+K+ E
Sbjct: 275 EKAME 279
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 126/248 (50%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++ EI SV
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITSV 199
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L S+E+ ++ RF S LG++++A + A++ +
Sbjct: 200 SR-VEKDEIARTYRYVVREL------SLEIKPADPEQYVPRFASELGLSDEAERQARQLL 252
Query: 235 QKSEEFDI 242
+ ++E I
Sbjct: 253 RDAKETGI 260
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V + C +CGL+LE ID EWR F N+S + RVG PT
Sbjct: 27 CPECD-STALVRSSDGSEVSCEDCGLILEEGGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRNQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ E+ +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI ++LGL EM + ++ RFCS L + + A E +
Sbjct: 205 SR-VDRMEIGRTYRYISQELGL------EMEPVDPKKYVPRFCSELDLPEEVQLKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 NTTAE 262
>gi|435846022|ref|YP_007308272.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672290|gb|AGB36482.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 326
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 126/249 (50%), Gaps = 21/249 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C ++V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDVVCPECA--GQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LGL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++ E
Sbjct: 144 EIDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDE 203
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ K EI R Y+V++LGLE + ++ RF S L ++++A A
Sbjct: 204 IADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRA 256
Query: 231 QEAVQKSEE 239
+ +Q ++E
Sbjct: 257 RGLLQNAKE 265
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 20/247 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG
Sbjct: 40 TETKCPECGSK-KLINDHERGEVVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGA 97
Query: 62 PTNPLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N A L +WQ + +R L A
Sbjct: 98 PITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALS 157
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ E
Sbjct: 158 ELDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDE 217
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ TKKE+GR ++ ++L ++++ D++ RF S LG++ + A
Sbjct: 218 IAEVSR-VTKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKA 270
Query: 231 QEAVQKS 237
+ ++++
Sbjct: 271 IDIIEQA 277
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D G+TVC ECGLV++ + ID EWR F N S + RVG PT
Sbjct: 49 CPECGSET-LVSDSEHGETVCDECGLVVQENEIDRGPEWRAF-NSSEKDQKSRVGAPTTN 106
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 166
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A+ IY++ + GR+ + + A LY + R PR++ EI SV
Sbjct: 167 MASALGLPESVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEITSV 226
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K+EI R Y+V++L L E+ ++ RF S LG+++++ + A++ +
Sbjct: 227 SR-VEKEEIARTYRYVVRELKL------EIKPADPEQYVPRFASELGLSDESERRARQLL 279
Query: 235 QKSEE 239
+ ++E
Sbjct: 280 KNAKE 284
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++V D+ G+ +CS CGLV++ IDE EWR F +E ++ R G P
Sbjct: 14 CPECG-SSQLVRDYERGELICSNCGLVIDDSYIDEGPEWRAFDSEQNESR-ARTGSPMTY 71
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R + +R L A + +
Sbjct: 72 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 131
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ L + +++ A IY+K Q RGR+ + ++A +Y ACR + PRT+ EI SV
Sbjct: 132 MTSNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASV 191
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
KKEIGR + + L L S D++ RFCS L ++ +A K A+E +
Sbjct: 192 TR-VKKKEIGRTYRIMARYLKLNIMPS------KPEDYVNRFCSKLRLSMEARKRAEEIL 244
Query: 235 QKSEEFDI 242
+ + + D+
Sbjct: 245 KMAVDNDL 252
>gi|448396906|ref|ZP_21569354.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673435|gb|ELZ25996.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 326
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 30 VCPECA--GQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 87 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 147 RMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIAD 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 207 VSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRARSL 259
Query: 234 VQKSEE 239
+Q ++E
Sbjct: 260 LQNAKE 265
>gi|448314502|ref|ZP_21504190.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445594820|gb|ELY48961.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 316
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 119/244 (48%), Gaps = 20/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC T ++ D G+ VC ECGLVL ID EWR F + D RVG P
Sbjct: 20 LCPDCDTAT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAFNAQEHDQ-LSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +SS L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSSEKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ +
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSSLYTACRKEDIPRSLEEVTA 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVSKDVETKAVEI 250
Query: 234 VQKS 237
+ ++
Sbjct: 251 IDRT 254
>gi|284164125|ref|YP_003402404.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284013780|gb|ADB59731.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 329
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 34 CPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI V
Sbjct: 151 MASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADV 210
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++LGLE + ++ RF S L ++++A A+ +
Sbjct: 211 SR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRARALL 263
Query: 235 QKSEE 239
Q ++E
Sbjct: 264 QNAKE 268
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 13/230 (5%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGGL 72
E ++D S G+ VC++CG V+E + +DE EWR F + G + RVG P + LL D GL
Sbjct: 14 EFIYDPSRGEIVCAKCGYVVEENVVDEGPEWRAF--DPGQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ L L +++
Sbjct: 72 STDIGIDRSVTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASHLALPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI V+ KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSK-VDKKEIGRSF 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+I + L L + + D++ +F LG++ + K A E ++++
Sbjct: 191 RFIARHLNLTPKKLF----VKPSDYVNKFADELGLSEKVRKRAIELLEEA 236
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + + +D LGL ++ RA E
Sbjct: 178 VSKVDKKEIGRSFRFIARHLN------LTPKKLFVKPSDYVNKFADELGLSEKVRKRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
+ ++ ++ + G++ L+AA LYIA E++ RT +E+ VA R KE +V
Sbjct: 232 LLEEAYNRGLTSGKSPAGLVAAALYIAGLMEEERRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++L L+
Sbjct: 291 EKLNLKV 297
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC +CGLVL ID EWR F N ++ RVG P
Sbjct: 28 LCPDCETET-IVHDPDRGERVCEQCGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 85
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 86 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ +
Sbjct: 146 RMVSALGVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L + A E
Sbjct: 206 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVGKDIETKAVEI 258
Query: 234 VQKSEE 239
+ ++ E
Sbjct: 259 IDRTTE 264
>gi|448394859|ref|ZP_21568456.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445661995|gb|ELZ14770.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 329
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 34 CPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + AC+Y A RQ PR++ EI V
Sbjct: 151 MASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADV 210
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++LGLE + ++ RF S L ++++A A+ +
Sbjct: 211 SR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRARALL 263
Query: 235 QKSEE 239
Q ++E
Sbjct: 264 QNAKE 268
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 22/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ V + +C +CGLVL+ +ID EWR F N S + RVG PT
Sbjct: 97 LCPECESEAIV---QDGDELLCEDCGLVLDEQTIDRGPEWRAF-NASERDSKSRVGAPTT 152
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I N A G LSS L WQ R D R L A +
Sbjct: 153 QTMHDKGLTTQIDWKNKDAYGNSLSSRKREQMSRLRTWQERVRTKDAGERNLQFALSEMD 212
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LG+ + ++ A+ IY++ ++ RGR+ + + CLY ACRQE PR++ E+
Sbjct: 213 RMASALGVPKSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDEVAD 272
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ +EIGR Y+ K+L S+EM + +++ RF S LG+ + + A +
Sbjct: 273 VSR-VPYQEIGRTYRYVAKEL------SLEMRPVDPKEYVPRFASELGVPEEVEQKANDV 325
Query: 234 VQKSEE 239
+ + E
Sbjct: 326 IDTAAE 331
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSA--GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+ C +C+ + F SA G+ VC +CGL+LE +ID EWR F N + RVG
Sbjct: 38 ERVCPECESAS---FIKSADQGELVCEDCGLILEDDNIDRGPEWRAF-NHAERQSKSRVG 93
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAF 109
PT + D GL+T I N ASG LS+ L +WQ R D R L A
Sbjct: 94 APTTQTMHDKGLTTNIGWQNKDASGRSLSAEKRTRMNRLRKWQERVRTKDAGERNLQFAL 153
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
M+ LG+ ++++ A+ IY++ RGR+ +A+ LY ACR+E PR+++
Sbjct: 154 SETDRMASALGVPRSVREVASVIYRRALSDDLIRGRSIEAVATGALYAACRKEGIPRSLE 213
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
E+ VA +KEIGR YI ++L L M ++ RFCS L ++ +
Sbjct: 214 EVTHVAR-VEQKEIGRTYRYIARELEL------GMRPTDPQKYVPRFCSALDLSEEVQSK 266
Query: 230 AQEAVQKS 237
A E ++ S
Sbjct: 267 ANEVIEAS 274
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + + C +CGL+LE SID EWR F N + + RVG PT
Sbjct: 27 CPECD-STALARSADESEISCEDCGLILEEESIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ EI +V
Sbjct: 145 MASALGVPRSVREVASVLYRRTLDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIAAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI K+L S+EM + ++ RFCS L + ++ A E +
Sbjct: 205 SR-VDRMEIGRTYRYISKEL------SLEMQPVDPKKYVPRFCSELELPDEVQSKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 DTTAE 262
>gi|58268742|ref|XP_571527.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227762|gb|AAW44220.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 371
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 26/255 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +E+C
Sbjct: 145 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD--------FMRRFCSNLGMNNQA 226
A +KKE+G+ ++ + + Q M ++H + + RF + L + N
Sbjct: 204 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 262
Query: 227 VKA----AQEAVQKS 237
A EAV KS
Sbjct: 263 FNVSKHIAGEAVAKS 277
>gi|134113140|ref|XP_774595.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257239|gb|EAL19948.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 371
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 26/255 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +E+C
Sbjct: 145 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD--------FMRRFCSNLGMNNQA 226
A +KKE+G+ ++ + + Q M ++H + + RF + L + N
Sbjct: 204 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 262
Query: 227 VKA----AQEAVQKS 237
A EAV KS
Sbjct: 263 FNVSKHIAGEAVAKS 277
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 125/243 (51%), Gaps = 20/243 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE +D S G+ C+ CG VLE + +DE EWR F E + R G P
Sbjct: 7 CPNCG-STEFFYDRSRGEYYCAGCGQVLEWNIVDEEPEWRAFEPEQREKR-ARTGPPMTN 64
Query: 66 LLADGGLSTVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N +G + + L WQ R D R L A +
Sbjct: 65 MIHDKGLSTDIDWRDKDIHGNPITGVYRNKMRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ ++GL +K++A +Y+K +K RGR+ + +++A LY ACR E PRT+ EI
Sbjct: 125 MAVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARF 184
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ TKKEIGR+ ++ + LGL + + D++ RF LG++ + K A+E +
Sbjct: 185 SK-VTKKEIGRSYRFMARGLGLNLLPTSPI------DYVDRFGDALGVSARTKKRAREIL 237
Query: 235 QKS 237
Q++
Sbjct: 238 QEA 240
>gi|58268740|ref|XP_571526.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227761|gb|AAW44219.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 447
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 128/255 (50%), Gaps = 26/255 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 103 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 162
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 163 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 220
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +E+C
Sbjct: 221 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 279
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD--------FMRRFCSNLGMNNQA 226
A +KKE+G+ ++ + + Q M ++H + + RF + L + N
Sbjct: 280 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 338
Query: 227 VKAAQ----EAVQKS 237
++ EAV KS
Sbjct: 339 FNVSKHIAGEAVAKS 353
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 20/247 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T V+ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-VIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++E+ S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVSKEVETRAVEI 250
Query: 234 VQKSEEF 240
+ ++ +
Sbjct: 251 IDQTTDL 257
>gi|367012261|ref|XP_003680631.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
gi|359748290|emb|CCE91420.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
Length = 356
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + V + S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 26 CPECKVYPPKVAERFSEGDIVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSS-SLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
NPLL LST I + G G+ ++ L R Q N D L F I + D
Sbjct: 86 NPLLDGNSLSTRIGQ--GEGGDLRATRDLNRAQGKNVMDKKDNELQGVFAKITMLCDAAE 143
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK D+K+ +G++ ++++AA +++ CR+ D RT KEI S+ + TK
Sbjct: 144 LPKIVKDCAKEAYKLCHDEKALKGKSTESIMAAAIFVGCRRADVARTFKEIQSIIHVKTK 203
Query: 181 ---KEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
K + K + ++ G + M ++ RFCS+LG+ Q AA+ +
Sbjct: 204 EFFKTLSIMKGILREKSADGFIKIDTDNMSGAQNLTYIPRFCSHLGLPMQLTTAAEYTAK 263
Query: 236 KSEEFD 241
K +E +
Sbjct: 264 KCKEIE 269
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 20/247 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T + CS+C + VV G+ +C ECGLV+E +D EWR F N + RVG
Sbjct: 22 TISTCSECGS-SNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGA 79
Query: 62 PTNPLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GL+T I K A G +SS L +WQ+R D R L A
Sbjct: 80 PTTQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTRDAGERNLQFALS 139
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LG+ ++++ + IY++ + RGR+ + + A LY CRQED PR+++E
Sbjct: 140 EIDRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIPRSLEE 199
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ + E+ R YI +LGL E+ I ++ RF S L + + A
Sbjct: 200 ITEVSR-IERIEVSRTYRYISNELGL------ELLPIDPKQYVPRFSSKLDLPQEVEAKA 252
Query: 231 QEAVQKS 237
E ++++
Sbjct: 253 NEIIEET 259
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 20/247 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++E+ S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVSKEVETRAVEI 250
Query: 234 VQKSEEF 240
+ ++ +
Sbjct: 251 IDQTTDL 257
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 20/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++E+ S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ + A E
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVSKEVETRAVEI 250
Query: 234 VQKS 237
+ ++
Sbjct: 251 INQT 254
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 17/234 (7%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGG 71
TE ++D S G+ VC CG V+E + +DE EWR F + G + RVG P + LL D G
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF--DPGQREKRARVGAPESILLHDKG 70
Query: 72 LSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
LST I +G L +WQ+R D R L A + ++ L L ++
Sbjct: 71 LSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A +Y++ + RGR+ +A++AAC+Y ACR PRT+ EI V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSR-VDKKEIGRS 189
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN----NQAVKAAQEAVQK 236
+I + L L + + D++ +F LG++ +A++ +EA Q+
Sbjct: 190 FRFIARHLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEAYQR 239
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + + +D LGL ++ RA E
Sbjct: 178 VSRVDKKEIGRSFRFIARHLN------LTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 ILEEAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++L L+
Sbjct: 291 EKLNLKV 297
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ VC +CGLV+E +ID EWR F N + RVG PT + D GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ RGR+ + + + LY ACR+E PR+++EI V+ +KEIGR Y+
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYV 203
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++L L EM + ++ RFCS L ++ + A + ++ + E
Sbjct: 204 SQELAL------EMRPVDPKKYVPRFCSELTLSEEVQAKANDIIETTAE 246
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 36 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 93
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 153
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++ EI SV
Sbjct: 154 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITSV 213
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L S+E+ ++ RF S+LG+++++ + A++ +
Sbjct: 214 SR-VEKDEIARTYRYVVREL------SLEIKPADPEQYVPRFASDLGLSDESERRARQLL 266
Query: 235 QKSEE 239
+ ++E
Sbjct: 267 KNAKE 271
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++ EI SV
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITSV 199
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L S+E+ ++ RF S+LG+++++ + A++ +
Sbjct: 200 SR-VEKDEIARTYRYVVREL------SLEIKPADPEQYVPRFASDLGLSDESERRARQLL 252
Query: 235 QKSEE 239
+ ++E
Sbjct: 253 KNAKE 257
>gi|68492125|ref|XP_710164.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46431308|gb|EAK90894.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|238879990|gb|EEQ43628.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 346
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 14/245 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C DCK+ +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG
Sbjct: 21 ICPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+N L L+T+I+ ++ +SL + Q + + L A++ I+ + +
Sbjct: 81 SNSLYDTEDLTTMISYAPNSNSGSSKNSLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L + D A +YK V + + +G+ QD+++AA + + CR+ D PRT++EI ++ N TK
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRALTNVPTK 200
Query: 181 ---KEIGRAKEYIVKQLGLE------TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
K G K+ I L + ++ + T A D +RRFCS+LG+ + A+ +A
Sbjct: 201 QIAKVTGLIKKIIRSHLNNDDASTSIVDETSSLTTHSAEDLIRRFCSHLGL-SLAITSAS 259
Query: 232 EAVQK 236
E V +
Sbjct: 260 EYVAR 264
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++V D+ G+ VCS CGLV++ IDE EWR F +E ++ R G P
Sbjct: 15 CPECG-SSQLVRDYERGELVCSNCGLVIDDSYIDEGPEWRAFDSEQSESR-ARTGSPMTY 72
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R + +R L A + +
Sbjct: 73 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 132
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ L + +++ + IY+K Q RGR+ + ++A +Y ACR + PRT+ EI SV
Sbjct: 133 MASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASV 192
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
KKEIGR + + L L S D++ RFCS L ++ +A K A+E +
Sbjct: 193 TR-VKKKEIGRTYRIMARYLKLNILPS------KPDDYVNRFCSKLRLSMEARKRAEEIL 245
Query: 235 QKSEEFDI 242
+ + + D+
Sbjct: 246 KMAIDNDL 253
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T+++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 50 CPECES-TQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LSS+ L W R D R L A +
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVDR 167
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 168 MASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEITNV 227
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EI R Y+V++L L ++ ++ RF S+L ++++A + A++ +
Sbjct: 228 SR-VGRDEIARTYRYVVRELKL------QIKPADPEQYVPRFASDLDLSDEAERRARQLL 280
Query: 235 QKSEE 239
+ ++E
Sbjct: 281 RSAKE 285
>gi|254577986|ref|XP_002494979.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
gi|238937869|emb|CAR26046.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
Length = 357
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 26 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLG 120
+NPLL LST I G+ + L R Q N D L F + + D
Sbjct: 85 SNPLLDGNSLSTRIGSAEGSDAR-TTRDLNRAQGKNVMDKKDNELQAVFAKLTMLCDAAE 143
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK D+K+ +G++ ++++A+ + I CR+ + RT++EI S+ + TK
Sbjct: 144 LPKIVKDCAKEAYKLCYDEKALKGKSTESIMASAILIGCRRAEVARTLREIQSIIHVKTK 203
Query: 181 ---KEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
K +G K + ++ G+ + M ++ RFCS+LG+ Q A++ +
Sbjct: 204 EFGKSLGIMKGILREKSSDGIIKIDTNNMSGAQNLPYIPRFCSHLGLPMQVTTASEYTAR 263
Query: 236 KSEEFD 241
K +E +
Sbjct: 264 KCKEIE 269
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 25/239 (10%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF-ANESGDNDPVRVGGPTNPLLADGG 71
+++D G+ VC+ CG V+ + ID EWR F A++ RVG P ++ D G
Sbjct: 16 VRLIYDPERGEIVCTACGYVVAQNIIDSGPEWRAFDADQRVKRG--RVGAPMTMMIHDKG 73
Query: 72 LSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LS+ I K G +S + L +WQ R D R L A + M+ +LG
Sbjct: 74 LSSTIDWKNKDIHGHDISGTMRAKMYRLRKWQRRIRVSDAAERNLAFALSELDRMASQLG 133
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L IK+ A +Y+K ++ RGR+ + + AACLY ACR PRT+ EI VA K
Sbjct: 134 LPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEIEEVAR-VDK 192
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN----NQAVKAAQEAVQ 235
KEIGR+ +I ++L L + + D++ RF LG++ N+AVK Q+A++
Sbjct: 193 KEIGRSYRFIARELHLRLTPTSPI------DYVSRFADQLGLSERTKNRAVKILQKAIK 245
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
++ +D+LGL K+RA +I +K + GR + AA LYIA E + +T +E+
Sbjct: 219 VSRFADQLGLSERTKNRAVKILQKAIKLGLTSGRGPMGVAAAALYIASVLEGEKKTQREV 278
Query: 172 CSVANGATKKEIGRAKEYI 190
VA+ R KE +
Sbjct: 279 AEVAHVTEVTVRNRYKELV 297
>gi|336255382|ref|YP_004598489.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335339371|gb|AEH38610.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 329
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 31 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 87
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I N A G L S L +W R D R L A
Sbjct: 88 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 147
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 148 IDRMASALGLPNNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 208 ADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRAR 260
Query: 232 EAVQKSEE 239
+Q ++E
Sbjct: 261 SLLQNAKE 268
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 19/236 (8%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE FD + G+ VC CG VLE + IDE EWR F + R G P ++ D GL
Sbjct: 13 TEFFFDRTRGELVCRVCGYVLEENVIDEGPEWRAFDPDQRARR-ARTGAPMTLMIHDKGL 71
Query: 73 STVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGL 121
ST I N +G + S L WQ R D R L A + M+ ++ L
Sbjct: 72 STDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRL 131
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+ EI V+ TKK
Sbjct: 132 PRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSK-VTKK 190
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
EIGR+ ++ + LGL + + D++ RF LG++++ + A+E +Q++
Sbjct: 191 EIGRSYRFMARGLGLNLRPTSPI------DYVDRFGDALGVSSKTKQRAKEILQEA 240
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ LG R ++P + D LG+ + K RA E
Sbjct: 184 VSKVTKKEIGRSYRFMARGLG-LNLRPTSP-------IDYVDRFGDALGVSSKTKQRAKE 235
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G+ L AA LY+A E + +T +E+ VA+ R KE +
Sbjct: 236 ILQEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVE 295
Query: 192 K 192
K
Sbjct: 296 K 296
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T+++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 50 CPECES-TQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LSS+ L W R D R L A +
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVDR 167
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 168 MASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEITNV 227
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EI R Y+V++L L ++ ++ RF S+L ++++A + A++ +
Sbjct: 228 SR-VGRDEIARTYRYVVRELKL------QIKPADPEQYVPRFASDLDLSDEAERRARQLL 280
Query: 235 QKSEE 239
+ ++E
Sbjct: 281 RSAKE 285
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 35 CPECGSE-KLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 92
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 93 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 152
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ EI V
Sbjct: 153 DSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEV 212
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KKE+GR ++ ++L ++++ D++ RF S L ++ + A E +
Sbjct: 213 SR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELNLSGEVQSKAIEII 265
Query: 235 QKSEE 239
+K+ E
Sbjct: 266 EKAME 270
>gi|405121333|gb|AFR96102.1| transcription initiation factor iib [Cryptococcus neoformans var.
grubii H99]
Length = 371
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 26/255 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +E+C
Sbjct: 145 KCDAMLLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD--------FMRRFCSNLGMNNQA 226
A +KKE+G+ + + + Q M ++H + + RF + L + N
Sbjct: 204 ALKISKKELGQVFNQVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 262
Query: 227 VKAAQ----EAVQKS 237
A++ EAV KS
Sbjct: 263 FNASKHIAGEAVAKS 277
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 119/243 (48%), Gaps = 20/243 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ T +V D G+ VC ECGLVL ID EWR F + DN RVG P
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAFNAQEHDN-LSRVGAPLTQ 80
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIAT 114
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 81 SMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++E+ SV
Sbjct: 141 MVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTSV 200
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++EIGR YI +L + + + F+ RFCS L + A E +
Sbjct: 201 SR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVGKDVETKAIEII 253
Query: 235 QKS 237
++
Sbjct: 254 DQT 256
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 11 CPECGSE-KLINDHERGEIVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 68
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 69 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ EI V
Sbjct: 129 DSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEV 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KKE+GR ++ ++L ++++ D++ RF S L ++ + A E +
Sbjct: 189 SR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELNLSGEVQSKAIEII 241
Query: 235 QKSEE 239
+K+ E
Sbjct: 242 EKAME 246
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V + C +CGL+LE +ID EWR F ++S + RVG PT
Sbjct: 27 CPECDSSS-LVRSADESEVSCEDCGLILEEETIDRGPEWRAF-DQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ E+ +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI ++L S+EM + ++ RFCS L ++ + A E +
Sbjct: 205 SR-VERMEIGRTYRYISQEL------SLEMEPVDPKKYVPRFCSELSLSEEVQAKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 DTTAE 262
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 120/244 (49%), Gaps = 20/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ DQ RGR+ + + + LY ACR+E PR+++E+ +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTA 199
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR Y+ +L + + + F+ RFCS L ++ A E
Sbjct: 200 VSR-VDQREIGRTYRYVADEL------DINLEPTNPRQFVPRFCSELDVDKDVESKAIEI 252
Query: 234 VQKS 237
+ ++
Sbjct: 253 IDET 256
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 119/244 (48%), Gaps = 20/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ DQ RGR+ + + + LY ACR+E PR+++E+
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTG 199
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ A E
Sbjct: 200 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVDKNVESKAIEI 252
Query: 234 VQKS 237
+ ++
Sbjct: 253 IDET 256
>gi|320589326|gb|EFX01788.1| transcription initiation protein [Grosmannia clavigera kw1407]
Length = 343
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 120/236 (50%), Gaps = 19/236 (8%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE-SGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN+ G++DP RVG
Sbjct: 21 ICPDCKEYPPNLVEEFSSGDMVCDSCGLVVGPRIIDSRSEWRTFANDDQGNDDPSRVGES 80
Query: 63 TNPLLADGGLSTVI--AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
N L D GL T + NG L+S + Q+ N D L ++ I+T+ D +
Sbjct: 81 ANALANDEGLRTQVDMRAANGRLAGKLNSINKKSQSEKLNSD--LQEGYRAISTLVDMMQ 138
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ A+ IYK + +G+ ++A++A C++IACRQ PRT +EI ++ TK
Sbjct: 139 TAPIVNTTASHIYKLAYENGQLKGKPREAVIAGCIFIACRQCGVPRTFREIYAITR-VTK 197
Query: 181 KEIGRA----KEYIVKQLGLETGQSVEMG--------TIHAGDFMRRFCSNLGMNN 224
KEIGR + ++ K S G + A + R+CS LG N
Sbjct: 198 KEIGRVFKSLESFLSKIQERNPQASAAQGVKDYKASSSTSAEELCTRYCSLLGFRN 253
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + + C +CGL+LE +ID EWR F N + + RVG PT
Sbjct: 27 CPECDSTT-LARSADGSEISCEDCGLILEEEAIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ +G+ ++++ A+ +Y++ ++ RGR+ + + + LY ACR E PR++ EI +V
Sbjct: 145 MASAMGVPRSVREVASVLYRRALEEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIAAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI K+LGL EM + ++ RFCS L + ++ A E +
Sbjct: 205 SR-VERMEIGRTYRYISKELGL------EMQPVDPKKYVPRFCSELELPDEVQSKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 DTTAE 262
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++E+ S
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ A +
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVSKAVETKAVDI 250
Query: 234 VQKSEE 239
++++ E
Sbjct: 251 IEQTTE 256
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++ EI SV
Sbjct: 140 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITSV 199
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L S+E+ ++ RF S LG+++++ + A++ +
Sbjct: 200 SR-VEKDEIARTYRYVVREL------SLEIKPADPEQYVPRFASELGLSDESERRARQLL 252
Query: 235 QKSEE 239
+ ++E
Sbjct: 253 KNAKE 257
>gi|1943468|pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
Length = 204
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 90/139 (64%), Gaps = 7/139 (5%)
Query: 104 GLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED 163
++ AFK I TM+DR+ L DR N ++++ +QKS +GR DA+ +ACLYIACRQE
Sbjct: 1 AMMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEG 60
Query: 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL +
Sbjct: 61 VPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLP 113
Query: 224 NQAVKAAQEAVQKSEEFDI 242
Q AA +K+ E D+
Sbjct: 114 KQVQMAATHIARKAVELDL 132
>gi|440797904|gb|ELR18978.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 303
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 129/245 (52%), Gaps = 19/245 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK E + D + GD +C +CGLV+ +D SEWR FA +SGD DP R
Sbjct: 1 MCPDCKNPNGEFMEDFANGDMICRDCGLVVGDRIVDVRSEWRNFA-DSGD-DPSRASR-V 57
Query: 64 NPLLADGGLSTVIAK-----PNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMS 116
N L GGL+T IAK +G+ + +WQ R S D+ L+ F I ++
Sbjct: 58 NDWLPSGGLATEIAKLPTGPNGQNNGQGGGGKMSQWQRRIQLSQGDQNLLSGFDKITHIA 117
Query: 117 DRLGLVATIKDRANEIYKKVEDQKSSRGR-NQDALLAACLYIACRQEDKPRTVKEICSVA 175
+ L L IK++A E+Y E +++ R +D+++AA +Y+AC++E PRT KEI S
Sbjct: 118 EILVLPQKIKNKAKELYSSFESKRNKSMRCKKDSIVAAIIYMACKEEGVPRTFKEI-SKE 176
Query: 176 NGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
++KEI + + K L TG++ A D + RFCS L ++N+ + A +
Sbjct: 177 TEISEKEIRKYYRALNKILPKGTGRT------SASDLVNRFCSKLKLSNEIMNLATDIAN 230
Query: 236 KSEEF 240
K+ F
Sbjct: 231 KAAAF 235
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+E PR+++E+ S
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L ++ A +
Sbjct: 198 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVSKAVETKAVDI 250
Query: 234 VQKSEE 239
++++ E
Sbjct: 251 IEQTTE 256
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC ECGLV+E + ID EWR F N S + RVG PT
Sbjct: 49 CPECGSEA-LVSDSEHGETVCDECGLVVEENEIDRGPEWRAF-NSSEKDQKSRVGAPTTN 106
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 166
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ + IY++ + GR+ + + + LY A R D PR++ EI SV
Sbjct: 167 MASALGLPENVRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEITSV 226
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L L E+ ++ RF S LG+++++ + A++ +
Sbjct: 227 SR-VEKDEIARTYRYVVRELKL------EIKPADPEQYVPRFASELGISDESERRARQLL 279
Query: 235 QKSEE 239
+ ++E
Sbjct: 280 KNAKE 284
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 19/236 (8%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D + RVG PT + D GLST
Sbjct: 32 VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTNTMHDKGLST 90
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS+ L +W R D R L A I M+ LGL
Sbjct: 91 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASALGLPD 150
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+++ A+ IY++ + GR+ + + +C+Y A RQ PR++ EI V+ K EI
Sbjct: 151 NVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIADVSR-VEKAEI 209
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
R Y+V++LGLE + ++ RF S+LG++++A A+E ++ +++
Sbjct: 210 ARTYRYVVRELGLEVAPA------DPESYVPRFASDLGLSDEASHRARELLKTAKD 259
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 22/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ V + +C +CGLVL+ +ID EWR F N + + RVG PT
Sbjct: 28 CPECESDAIV---QDGDELLCEDCGLVLDEQAIDHGPEWRAF-NATERDSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L WQ R D R L A +
Sbjct: 84 TMHDKGLTTQIDWKNKDAYGNSLSSKKRKQMSRLRTWQERVRTKDAGERNLQFALSEMDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ + ++ A+ IY++ ++ RGR+ + + CLY ACRQE PR++ E+ V
Sbjct: 144 MASALGVPRSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDEVADV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +EIGR Y+ K+L S+EM + +F+ RF S L + + + A E +
Sbjct: 204 SR-VPYQEIGRTYRYVAKEL------SLEMRPVDPKEFVPRFASELDVPEEVEQKANEII 256
Query: 235 QKSEE 239
S E
Sbjct: 257 DTSAE 261
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 121/236 (51%), Gaps = 19/236 (8%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE FD + G+ VC CG VLE + +DE EWR F + R G P ++ D GL
Sbjct: 13 TEFFFDRTRGELVCRVCGYVLEENVVDEGPEWRAFDPDQRARR-ARTGAPMTLMIHDKGL 71
Query: 73 STVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGL 121
ST I N +G + S L WQ R D R L A + M+ ++ L
Sbjct: 72 STDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRL 131
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+ EI V+ TKK
Sbjct: 132 PRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSK-VTKK 190
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
EIGR+ ++ + LGL + + D++ RF LG++++ + A+E +Q++
Sbjct: 191 EIGRSYRFMARGLGLNLRPTSPI------DYVDRFGDALGVSSKTKQRAKEILQEA 240
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ LG R ++P + D LG+ + K RA E
Sbjct: 184 VSKVTKKEIGRSYRFMARGLG-LNLRPTSP-------IDYVDRFGDALGVSSKTKQRAKE 235
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G+ L AA LY+A E + +T +E+ VA+ R KE +
Sbjct: 236 ILQEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVE 295
Query: 192 K 192
K
Sbjct: 296 K 296
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGLIVEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 216 SQELGL------EMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAE 258
>gi|448308488|ref|ZP_21498365.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593776|gb|ELY47945.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 326
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 21/249 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C + +V D G+T+C +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDLACPECAGN--LVVDDEHGETICEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I N A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LGL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++ E
Sbjct: 144 EIDRMASALGLPTNVRETASVIYRRALNEDLLPGRSIEGVSTACVYAAARQAGVPRSLDE 203
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ K EI R Y+V++LGLE + ++ RF S L ++++A A
Sbjct: 204 IADVSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRA 256
Query: 231 QEAVQKSEE 239
+ +Q ++E
Sbjct: 257 RGLLQNAKE 265
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 115/225 (51%), Gaps = 19/225 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ VC +CGLV+E +ID EWR F N + RVG PT + D GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ RGR+ + + + LY ACR+E PR+++EI V+ +KEIGR Y+
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYV 203
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
++L L EM + ++ RFCS L ++ + A + ++
Sbjct: 204 SQELAL------EMRPVDPKKYVPRFCSELTLSEEVQAKANDIIE 242
>gi|386874567|ref|ZP_10116805.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807600|gb|EIJ66981.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 315
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 20/250 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C C K++ ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G P
Sbjct: 13 DGICGRCGKNS-MLTDNVTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-TDPTRTGAP 70
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKT 111
T+ + D GL+T+I N ASG+ LS+S L W +R ++ DR L A
Sbjct: 71 TSLTMHDRGLATIINPANKDASGKPLSTSMKSTIERLRTWDSRSKVNASSDRNLRQALSE 130
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+AT+ D+L L + ++A +Y+K ++ +GR+ AL+A+ LY ACR + PRT+K++
Sbjct: 131 LATLKDKLSLSDPVIEKAAYVYRKALEKGLVKGRSISALIASALYAACRDTETPRTLKDV 190
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
N +K+I R + K+L L +M + + R S + ++ + + A
Sbjct: 191 SDAGN-IKRKDIARCYRILHKELDL------KMPVVDPVQCVSRIASKVQISERTKRYAV 243
Query: 232 EAVQKSEEFD 241
+ ++ ++E +
Sbjct: 244 KVLKDAQEHE 253
>gi|125558451|gb|EAZ03987.1| hypothetical protein OsI_26125 [Oryza sativa Indica Group]
Length = 354
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 135/294 (45%), Gaps = 62/294 (21%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL------ESHSIDETSEWRTFANESGDNDPVR 58
+C C++ T +V DH GD +C+EC +VL ++ + A+ D+DP+
Sbjct: 10 YCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGADAPADDDPLL 69
Query: 59 VGG---------------PTNPLLADGGL---------STVIAKPNGASGEFLSSSLGRW 94
G PT L A+G + V K G G ++ +
Sbjct: 70 QGSDVVAAAAAEVACSVAPTK-LQAEGAAPAAPPRMRGAVVAPKVRGGGGGAVTKA---- 124
Query: 95 QNRGSNPD--RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK-SSRGRNQDALL 151
RG PD + L F I M+ RLGL ++DR ++ +KVE+ K +RGR++DAL
Sbjct: 125 --RGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDALY 182
Query: 152 AACLYIACRQEDKPRTVKEICSVAN--GATKKEIGRAKEYIVKQLG-----LETGQ---- 200
AACL+ ACR E PRT+KE+ + ATK+++G+ I + LG E GQ
Sbjct: 183 AACLHTACRMEGAPRTLKELIAATPDAAATKRDLGKFIHAIKRLLGSNDEEAEAGQDQAG 242
Query: 201 ----------SVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK-SEEFDIR 243
+ A +++ R+ S +GM+ Q V AAQ A + E D+R
Sbjct: 243 SKATNGCGGGGGAGAVVRASNYLLRYGSAVGMSGQEVSAAQRAASRLDESLDVR 296
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 133/253 (52%), Gaps = 24/253 (9%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M + C+ C K++ ++ D G+ C +CG V+ S + EWR+F + G DP R G
Sbjct: 7 MDNPTCARCGKNS-LLTDEVTGENFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTG 64
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
P++ ++ D GLSTVI N ASG+ LS+S L W +R + DR L A
Sbjct: 65 APSSLMIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQAL 124
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D++ + A + ++A IY+K ++K RGR+ A++AA LY ACR + PRT+K
Sbjct: 125 SDLNKLKDKVSIPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLK 184
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ---- 225
++ AN +K+I R + +L L +M + + + R S L ++ +
Sbjct: 185 DVADAAN-VKRKDIARCYRLLHHELEL------KMPVVDSIQCIARISSKLEISEKTKRY 237
Query: 226 AVKAAQEAVQKSE 238
AVK +EA ++ E
Sbjct: 238 AVKVLKEAQERKE 250
>gi|449017294|dbj|BAM80696.1| transcription initiation factor IIB [Cyanidioschyzon merolae strain
10D]
Length = 377
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 31/249 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++V D GD VC++CG+V ID EWRTF N+ DP RVGG NP
Sbjct: 14 CGECGS-TDLVEDTKNGDLVCAQCGVVAAELLIDLGHEWRTFENDDSAYDPNRVGGSINP 72
Query: 66 LLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLV 122
LL D GL+T I++ P GA+ L+ L R Q+R DR + + I+ + +R GL
Sbjct: 73 LL-DSGLATSISQGPAGANA--LNERLARAQSRNVLDANDRYVTECYNRISYLCERSGLP 129
Query: 123 ATIKDRANEIYKKVEDQKS-------SRGRNQD----ALLAACLYIACRQEDKPRTVKEI 171
+KDRA E+ + D + +R R ++ ++++A L+IACR E PRT EI
Sbjct: 130 QLVKDRACELLRLYYDHLTLGADGVRARARFREDETASIISAALFIACRNEGFPRTFNEI 189
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHA-GDFMRRFCSNL-------GMN 223
+ + A R Y VK + + G++ ++ I DF+ RFCS L +
Sbjct: 190 SVIVSVAK----SRVAAY-VKAMEMSIGEAAKISRIRTTDDFVSRFCSYLEIPNIVRSLV 244
Query: 224 NQAVKAAQE 232
NQ +AA E
Sbjct: 245 NQVARAAAE 253
>gi|448706184|ref|ZP_21700953.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
gi|445794734|gb|EMA45273.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
Length = 328
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 32 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 88
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 89 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 148
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A RQ PR++ EI
Sbjct: 149 RMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEIAD 208
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 209 VSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRARAL 261
Query: 234 VQKSEE 239
+Q ++E
Sbjct: 262 LQNAKE 267
>gi|383620637|ref|ZP_09947043.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448698233|ref|ZP_21698872.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445780852|gb|EMA31722.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 328
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 32 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 88
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 89 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 148
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A RQ PR++ EI
Sbjct: 149 RMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEIAD 208
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 209 VSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDEAEHRARAL 261
Query: 234 VQKSEE 239
+Q ++E
Sbjct: 262 LQNAKE 267
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ + C +CGL+LE +ID EWR F N S N RVG PT
Sbjct: 27 CPECDSSS-LIRSSDESEVSCEDCGLILEEEAIDRGPEWRAF-NHSERNSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRNQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ +Y++ + RGR+ + + + LY ACR E PR++ E+ +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVSAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI ++L S+EM + ++ RFCS L ++ + A E +
Sbjct: 205 SR-VDRMEIGRTYRYISQEL------SLEMEPVDPKKYVPRFCSELDLSEEVQAKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 DTTAE 262
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 113/226 (50%), Gaps = 19/226 (8%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPNGAS 83
+C +CGLVL+ ID EWR F N S RVG P + D GL+T I K A
Sbjct: 1 MCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAY 59
Query: 84 GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIY 133
G LSS L +WQ R D R L A I M+ LG+ ++++ A+ IY
Sbjct: 60 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 119
Query: 134 KKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193
++ ++ RGR+ + + + LY ACRQE PR++ E+ V+ +KEIGR YI ++
Sbjct: 120 RRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEVSR-VPQKEIGRTYRYISQE 178
Query: 194 LGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
LGL E+ + F+ RF S L ++ + A E + S E
Sbjct: 179 LGL------ELKPVDPKQFVPRFASALELSEEVQAKATEIIDVSAE 218
>gi|448319021|ref|ZP_21508530.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445597140|gb|ELY51217.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 326
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 30 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 87 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++ EI
Sbjct: 147 RMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIAD 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K EI R Y+V++LGLE + ++ RF S L ++++A A+
Sbjct: 207 VSR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLELSDEAEHRARAL 259
Query: 234 VQKSEE 239
+Q ++E
Sbjct: 260 LQNAKE 265
>gi|330507703|ref|YP_004384131.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
gi|328928511|gb|AEB68313.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
Length = 337
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK HT +V D+ + VCS+CGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECKSHT-LVRDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A +Y+K D+ RGR+ + + AA LY ACRQ + PRT+ EI V
Sbjct: 159 MASALGLSRNVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEV 218
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR ++ ++L L+ + + D++ RFCS L + + E +
Sbjct: 219 SR-VSRKEIGRTYRFVSRELALKLMPTSPI------DYIPRFCSGLNLKGEVQAKGIEIL 271
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 272 RQAAEKEL 279
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 216 SQELGL------EMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAE 258
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GLV+E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGLVIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 216 SQELGL------EMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAE 258
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 20/247 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T + CS+C ++VV S G+ +C CGLV+E ID EWR F ++ N RVG
Sbjct: 32 TLSTCSECGS-SDVVQHPSPGERICENCGLVIEEGMIDSGPEWRAFNHQERQNKS-RVGA 89
Query: 62 PTNPLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 90 PTTQTIHDKGLTTQIDWKNKDAYGRSISSKKRSQMNRLRKWQTRIRTKDAGERNLQFALS 149
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LG+ +++ + IY++ + RGR+ + + A LY CRQE PR+++E
Sbjct: 150 EIERMASALGVPKAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEE 209
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ V+ + EI R YI +LGL E+ I ++ RF S L ++ + A
Sbjct: 210 VTEVSR-IERIEISRTYRYISNELGL------ELLPIDPKQYVPRFTSKLDLSQEVETKA 262
Query: 231 QEAVQKS 237
+E + ++
Sbjct: 263 KEIIDET 269
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 21/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +H G+TVC+ECGLV+E ID EWR F N S ++ RVG PT
Sbjct: 33 CPECGGRLDADTEH--GETVCAECGLVVEEDEIDRGPEWRAF-NPSEKDEKSRVGAPTTN 89
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS+ L W R D R L A I
Sbjct: 90 MMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 149
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL T+++ A+ IY++ ++ GR+ + + A LY A RQ + PR++ E+ +V
Sbjct: 150 MASALGLPKTVRETASVIYRRALEENLLPGRSIEGVATASLYAAARQANTPRSLDEMTAV 209
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y+V++L L E+ ++ RF S+L +++ + A+E +
Sbjct: 210 SR-VEKMELTRTYRYVVRELNL------EIKPADPESYLPRFVSDLELSDDTERRARELI 262
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ T +V D + VC +CGLVL ID EWR F N ++ RVG P
Sbjct: 24 LCPECETDT-IVHDPDRSERVCEQCGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 81
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIA 113
+ D GL+T I N A+G +S+ L WQ R +R L A I
Sbjct: 82 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 141
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +K+ A+ IY++ +Q RGR+ + + + LY ACR+ED PR+++E+ +
Sbjct: 142 RMVSALGVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 201
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++EIGR YI +L + + + F+ RFCS L + A E
Sbjct: 202 VSR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVGKDVETKAVEI 254
Query: 234 VQKSEE 239
++++ E
Sbjct: 255 IEQTTE 260
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G LSS L +WQ R D R L A + M+ LG+ ++++ A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ + RGR+ + + + LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 227
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RFCS L ++ + A E ++ + E
Sbjct: 228 SQELGL------EMRPVDPKKYVPRFCSELDLSKEVQSKADEIIETTAE 270
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 117/243 (48%), Gaps = 20/243 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C E+V S G+ +C ECGLV+E +D EWR F N + RVG PT
Sbjct: 26 CPGCDS-DEIVHRSSRGERICEECGLVIEEELVDSGPEWRAF-NHQERQEKSRVGAPTTT 83
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L D GL+T I N A G +SS L +WQ R D R L A I
Sbjct: 84 TLHDKGLTTEIDWKNKDAYGRAISSDKRSQMHRLRKWQKRIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ +++ A+ IY++ D+ RGR+ + + A LY CR+E PR+++EI V
Sbjct: 144 MASALGVPRDVREVASVIYRRALDEDLIRGRSIEGVATAALYAGCRREGIPRSLEEIADV 203
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EI R Y+ +LGL E+ I ++ RF S L + + A E +
Sbjct: 204 SR-VERLEISRTYRYVSNELGL------ELLPIDPKQYVPRFSSKLDLPQEVKVKANEII 256
Query: 235 QKS 237
++
Sbjct: 257 DET 259
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G LSS L +WQ R D R L A + M+ LG+ ++++ A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ + RGR+ + + + LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 227
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RFCS L ++ + A E ++ + E
Sbjct: 228 SQELGL------EMRPVDPKKYVPRFCSELDLSKEVQSKADEIIETTAE 270
>gi|34394691|dbj|BAC83997.1| putative Transcription initiation factor IIB [Oryza sativa Japonica
Group]
Length = 354
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 134/294 (45%), Gaps = 62/294 (21%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL------ESHSIDETSEWRTFANESGDNDPVR 58
+C C++ T +V DH GD +C+EC +VL ++ + A+ D+DP+
Sbjct: 10 YCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGADAPADDDPLL 69
Query: 59 VGG---------------PTNPLLADGGL---------STVIAKPNGASGEFLSSSLGRW 94
G PT L A+G + V K G G ++ +
Sbjct: 70 QGSDVVAAAAAEVACSVAPTK-LQAEGAAPAAPPRMRGAVVAPKVRGGGGGAVTKA---- 124
Query: 95 QNRGSNPD--RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQK-SSRGRNQDALL 151
RG PD + L F I M+ RLGL ++DR ++ +KVE+ K +RGR++DAL
Sbjct: 125 --RGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDALY 182
Query: 152 AACLYIACRQEDKPRTVKEICSVAN--GATKKEIGRAKEYIVKQLG-----LETGQ---- 200
AACL+ ACR E PRT+KE+ + ATK+ +G+ I + LG E GQ
Sbjct: 183 AACLHTACRMEGAPRTLKELIAATPDAAATKRNLGKFIHAIKRLLGSNDEEAEAGQDQAG 242
Query: 201 ----------SVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK-SEEFDIR 243
+ A +++ R+ S +GM+ Q V AAQ A + E D+R
Sbjct: 243 SKATNGCGGGGGAGAVVRASNYLLRYGSAVGMSGQEVSAAQRAASRLDESLDVR 296
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 54 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 112
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 113 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 172
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 173 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 231
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 232 SQELGL------EMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAE 274
>gi|76801753|ref|YP_326761.1| transcription initiation factor TFB 2 [Natronomonas pharaonis DSM
2160]
gi|76557618|emb|CAI49201.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 126/251 (50%), Gaps = 27/251 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +H G+TVC++CGLV+E ID EWR F + D + RVG P
Sbjct: 24 DLTCPECDGRLQADTEH--GETVCADCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAP 80
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I + A G LSS L W R D R L A
Sbjct: 81 TTKMMHDEGLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGE 140
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D+ GR+ + + A LY A +Q PR++ E+
Sbjct: 141 IERMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAAKQARTPRSLDEV 200
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVK 228
V+ K EI R Y+V++LGLE I D ++ RF S++ ++++A +
Sbjct: 201 AKVSR-VEKSEIARTYRYVVRELGLE---------IQPADPKSYVPRFASDIELSDEAER 250
Query: 229 AAQEAVQKSEE 239
A++ + ++E
Sbjct: 251 RARQLLDNAQE 261
>gi|257388038|ref|YP_003177811.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170345|gb|ACV48104.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 322
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 127/249 (51%), Gaps = 27/249 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC +CGLV+E ID EWR F + S ++ RVG PT
Sbjct: 26 VCPEC--GGDLVADSERGETVCEDCGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTT 82
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 83 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 142
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + + LY A RQ PR++ EI +
Sbjct: 143 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISA 202
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K EI R Y+V++LGLE I D ++ RF S+L ++++ + A
Sbjct: 203 VSR-VEKDEIARTYRYVVRELGLE---------IQPADPESYVPRFASDLDLSDEVERRA 252
Query: 231 QEAVQKSEE 239
++ +Q +++
Sbjct: 253 RQLLQNAKQ 261
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 20/247 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T + CS+C + VV G+ +C ECGLV+E +D EWR F N + RVG
Sbjct: 22 TISTCSECGS-SNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGA 79
Query: 62 PTNPLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GL+T I K A G +SS L +WQ+R D R L A
Sbjct: 80 PTTQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTKDAGERNLQFALS 139
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LG+ ++++ + IY++ + RGR+ + + A LY CRQE PR+++E
Sbjct: 140 EIDRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEE 199
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ + E+ R YI +LGL E+ I ++ RF S L + + A
Sbjct: 200 ITEVSR-IERIEVSRTYRYISNELGL------ELLPIDPKQYVPRFSSKLNLPQEVEAKA 252
Query: 231 QEAVQKS 237
E ++++
Sbjct: 253 NEIIEET 259
>gi|320168443|gb|EFW45342.1| transcription initiation factor IIB [Capsaspora owczarzaki ATCC
30864]
Length = 342
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 26/253 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVG 60
+ C +C++ TE++ H GD VC+ CG V+ ID SEWRTFAN+ G+ DP R+G
Sbjct: 23 ETMCPECRRPTEILESHQTGDYVCTACGTVVGDRLIDFNSEWRTFANDKGEEHGDPSRIG 82
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
NPLL L+T +A+ G + E + S + + DR L AF+ I +R+
Sbjct: 83 SAVNPLLNGSDLTTTMAQ--GFNAESKAISRAHAKTTANQIDRQLQKAFRLIGDFGERMH 140
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDA--------------LLAACLYIACRQEDKPR 166
L + I +A +I+K++E+ +R RN A + AA L++ACR E R
Sbjct: 141 LPSNITLKAKQIFKQMEEH-YTRERNGAASQFGAIVGGKGAKAVAAASLFLACRLEKVSR 199
Query: 167 TVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQA 226
T KEI +V++ ++EI RA I + LG+ + + +++ R +L +
Sbjct: 200 TYKEITAVSH-VREQEISRASSEIKRILGIHS------TVVDVSEYVPRLGDHLSLPLNV 252
Query: 227 VKAAQEAVQKSEE 239
A + Q++ E
Sbjct: 253 TMLATQIAQRANE 265
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 126/251 (50%), Gaps = 27/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ DN RVG PT
Sbjct: 30 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI V
Sbjct: 147 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K EI R Y+V++L LE I D ++ RF S+LG++++A + A+
Sbjct: 207 SR-VEKDEIARTYRYVVRELKLE---------IQPADPESYVPRFASDLGLSDEAERRAR 256
Query: 232 EAVQKSEEFDI 242
+ ++E I
Sbjct: 257 SLLDTAKEQGI 267
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C VV D G++VC+ECGLV+E SID EWR F + D+ RVG PT
Sbjct: 32 CPECSGR--VVNDEEHGESVCTECGLVVEEDSIDRGPEWRAFNSNEKDSKS-RVGAPTTN 88
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
MS LGL +++ A+ IY++ + GR+ + + + LY A RQ PR++ E+ +V
Sbjct: 149 MSSALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYAAARQMQTPRSIDEVANV 208
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ E R YIV++LGLE + ++ RF S L + ++ + A+E +
Sbjct: 209 SR-IDAMEFKRTYRYIVRELGLEVAPA------DPASYVPRFASELDLPDEVERRARELL 261
Query: 235 QKSE 238
++
Sbjct: 262 DNAQ 265
>gi|167042470|gb|ABZ07195.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 304
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 22/249 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPTN 64
C C K T +V DH +G+T CS+CG VL + + EWR+F +E GD R G PT+
Sbjct: 14 CPRCVKGT-LVTDHESGETFCSKCGFVLSDKAQETGPEWRSFTQDEHGDR--ARAGAPTS 70
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG+ LSSS L W +R P DR AF +
Sbjct: 71 LTMHDMGLATIINPTNKDASGKPLSSSMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 130
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+ D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR + PR +K++
Sbjct: 131 RLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQ 190
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
AN +K+I R ++K+L L + + + R S +G+ + + A +
Sbjct: 191 AAN-IKRKDIARCYRLLIKELDL------HLPVTDSVQCVARIASQIGIQEKTKRHAIKV 243
Query: 234 VQKSEEFDI 242
++ +++ +I
Sbjct: 244 LKLAQKNEI 252
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 21/235 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + G+ +C ECG V++ IDE++EWR F E + R G P D G+ST I
Sbjct: 69 DSAKGELICIECGFVMDEDRIDESAEWRAFNAEEKEKK-ARAGQPLTYTKHDMGVSTEIG 127
Query: 78 KPNGASGEFLSSS---------LGRWQNR-GSNPDRGLILAFKTIATMSDRLGLVATIKD 127
K SGE S L +W R + DR L A + +M L L ++ +
Sbjct: 128 K---GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISNLNLPESVHE 184
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
+Y+K DQ RGR+ +++++A +YI R++ PRT+ EI S A+G K+EIGRA
Sbjct: 185 ETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTLDEI-SDASGIEKREIGRAY 243
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
Y+ ++LGL + D++ RF L ++ + A+ ++++ E D+
Sbjct: 244 RYVARELGL------RILPAKPQDYVPRFAGKLQLSGEVQARARNILKEARERDL 292
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 11/230 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VCS+CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPEHGEIVCSKCGFVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A KKEIGR+
Sbjct: 132 EAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIAR-VDKKEIGRSF 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIELLEEA 236
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
+ ++ ++ + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 LLEEAYNRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLE 197
++LGL+
Sbjct: 291 EKLGLK 296
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 20/248 (8%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+ + C +C +++ DH + VC +CGLV++ ID EWR F +E + RVG
Sbjct: 6 LKGSVCPECGSE-DLIEDHERAEIVCRKCGLVIDEKLIDMGPEWRAFDHEQREKR-TRVG 63
Query: 61 GPTNPLLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNR---GSNPDRGLILAF 109
P + D GLST+I K A L +WQ + +R L A
Sbjct: 64 APVTYTIHDKGLSTMIDWRNKDIYGKDIPAKSRAQWYRLRKWQRKIRISGATERNLAFAL 123
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ ++ RL L T+++ A+ IY+ +K RGR+ + ++AA LY ACR+ + PRT+
Sbjct: 124 SELDRIASRLNLPRTVRETASVIYRDAVKKKLIRGRSIEEVVAAALYAACRKCNVPRTLD 183
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
EI V +G KK +GR ++ ++L ++ + D++ RF S LG++ +
Sbjct: 184 EIAEV-SGVKKKGVGRTYRFLARKL------NIRLPPTSPIDYVPRFASELGLSGKVQSK 236
Query: 230 AQEAVQKS 237
A E ++K+
Sbjct: 237 AIEIIKKA 244
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 127/251 (50%), Gaps = 27/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ DN RVG PT
Sbjct: 29 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKS-RVGAPTTN 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 146 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEIAAV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K EI R Y+V++L LE I D ++ RF S+LG++++A + A+
Sbjct: 206 SR-VEKDEIARTYRYVVRELKLE---------IQPADPESYVPRFASDLGLSDEAERRAR 255
Query: 232 EAVQKSEEFDI 242
+ ++E I
Sbjct: 256 SLLDTAKEQGI 266
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 129/252 (51%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 40 TATVCPECGSK-QLVHDYERAELVCQHCGLVLDDDFIDRGPEWRAFDHDQRMKRS-RVGA 97
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 98 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 157
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ + PRT+ E
Sbjct: 158 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDE 217
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL ++ GD++ RFCS LG+ + A
Sbjct: 218 IAEVSR-VSRKEIGRTYRFISRELGL------KLLPTSPGDYVPRFCSGLGLKGEVQSRA 270
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 271 MEILKQAGEREL 282
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
LGL ++ RA EI K+ +++ + GR + AA +YI+ + RT +E+ VA G
Sbjct: 260 LGLKGEVQSRAMEILKQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVADVA-GV 318
Query: 179 TKKEIGRAKEYIVKQLGLE 197
T+ I + + +QL +E
Sbjct: 319 TEVTIRNRYKELAEQLDIE 337
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ + C +CGL+LE +ID EWR F N S + RVG PT
Sbjct: 27 CPECDSSS-LIRSSDESEISCEDCGLILEEETIDRGPEWRAF-NHSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRTQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ +Y++ + RGR+ + + + LY ACR E PR++ E+ +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI ++L S+EM + ++ RFCS L ++ + A E +
Sbjct: 205 SR-VERMEIGRTYRYISQEL------SLEMEPVDPKKYVPRFCSELDLSEEVQAKANEII 257
Query: 235 QKSEE 239
+ E
Sbjct: 258 DTTAE 262
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 216 SQELGL------EMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAE 258
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 12/242 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++++D+ G+ C+ CG V+ ID EWR F + S N R G P +
Sbjct: 10 CPYCG-SSKLIYDYERGEIFCAVCGSVVTQDIIDLGQEWRAF-DVSQRNKRSRTGAPESI 67
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRLG 120
L+ D GLST I SG L +WQ+R G DR L A + ++ +L
Sbjct: 68 LIHDKGLSTNIGSDKNVSGLMREKMYRLRKWQSRLRVGDATDRNLAFALTELDRITSQLK 127
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +K+ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A K
Sbjct: 128 LPRYVKEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIAR-VDK 186
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGR+ +I + L L + + D++ +F LG++ + + A E ++ + +
Sbjct: 187 KEIGRSFRFIARNLNLTPKKLF----VKPTDYVTKFADELGLSEKTRRRAVEILEMAYKL 242
Query: 241 DI 242
I
Sbjct: 243 GI 244
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL + RA E
Sbjct: 181 IARVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVTKFADELGLSEKTRRRAVE 234
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 235 ILEMAYKLGITSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LV 293
Query: 192 KQLGLE 197
++LGL+
Sbjct: 294 EKLGLK 299
>gi|55378612|ref|YP_136462.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637427|ref|ZP_21675665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448652038|ref|ZP_21681051.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448681127|ref|ZP_21691273.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448684938|ref|ZP_21693025.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55231337|gb|AAV46756.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764274|gb|EMA15429.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445768185|gb|EMA19272.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769441|gb|EMA20515.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782869|gb|EMA33710.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 321
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 125/245 (51%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+ES ID EWR F + S ++ RVG PT
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++ EI V
Sbjct: 143 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEITEV 202
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L S+E+ ++ RF S+L ++++A A++ +
Sbjct: 203 SR-VEKSEIARTYRYVVREL------SLEVRPADPESYVPRFASSLELSDEAEHRARQLL 255
Query: 235 QKSEE 239
Q ++E
Sbjct: 256 QNAKE 260
>gi|344212646|ref|YP_004796966.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448631082|ref|ZP_21673537.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448671125|ref|ZP_21687117.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343784001|gb|AEM57978.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445755456|gb|EMA06846.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445766207|gb|EMA17341.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 321
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 125/245 (51%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+ES ID EWR F + S ++ RVG PT
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++ EI V
Sbjct: 143 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEITEV 202
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L S+E+ ++ RF S+L ++++A A++ +
Sbjct: 203 SR-VEKSEIARTYRYVVREL------SLEVRPADPESYVPRFASSLELSDEAEHRARQLL 255
Query: 235 QKSEE 239
Q ++E
Sbjct: 256 QNAKE 260
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 216 SQELGL------EMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAE 258
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 216 SQELGL------EMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAE 258
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPT 63
C C TE ++D G+ VC++CG V+E + +DE EWR F E G + R G P
Sbjct: 9 VCPICG-STEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAF--EPGQREKRARTGAPM 65
Query: 64 NPLLADGGLSTVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTI 112
++ D GLST I N +G + + L WQ R D R L A +
Sbjct: 66 TLMIHDKGLSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSEL 125
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ +L L +K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+ EI
Sbjct: 126 DRMAAQLRLPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 185
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
SV+ +KKEIGR+ ++ + LGL + + +++ RF LG++ + K A+E
Sbjct: 186 SVSK-VSKKEIGRSYRFMARGLGLNLRPTSPI------EYVDRFGDALGVSARTKKRAKE 238
Query: 233 AVQKS 237
+ ++
Sbjct: 239 ILNEA 243
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 12/237 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 7 CPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I SG L +WQ+R D R L A + ++ +L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A K
Sbjct: 125 LPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR-VDK 183
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KEIGR+ +I + L L + + D++ +F LG++ + + A E + ++
Sbjct: 184 KEIGRSYRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILDEA 236
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I + + + G++ L+AA LYIA E + RT +E+ VA R KE +
Sbjct: 232 ILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVE 291
Query: 192 K 192
K
Sbjct: 292 K 292
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 125/254 (49%), Gaps = 26/254 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + + D G+TVC +CGLV+E ID EWR F D RVG P
Sbjct: 20 ETLCPECGS-SNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQKS-RVGAP 77
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G LSS+ L W R D R L A
Sbjct: 78 TTNMMHDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGE 137
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D GR+ + + + LY A RQ PR++ E+
Sbjct: 138 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEL 197
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVK 228
+V+ K EI R Y+V++L LE I D ++ RF S LG+N+++ +
Sbjct: 198 ETVSR-VDKDEISRTYRYVVRELNLE---------IEPADPEQYVPRFASELGLNDESER 247
Query: 229 AAQEAVQKSEEFDI 242
A++ ++ ++E I
Sbjct: 248 HARQLLRTAKEQGI 261
>gi|331218510|ref|XP_003321932.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300922|gb|EFP77513.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 345
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 132/233 (56%), Gaps = 24/233 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DCK +V + S+GD VC CGLV+ +D SEWRTFA + GD DP RVGGP+N
Sbjct: 28 ICPDCK-CARLVEEFSSGDLVCGSCGLVVGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSN 85
Query: 65 PLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
PLL +G T+I+ +G +G ++ L R R + N ++ + AF +I M D +
Sbjct: 86 PLL-NGVETFETIISFKDGNTG--VARDLNRAATRAAVKNGEKSVAAAFLSIQDMCDTIS 142
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L T+ D A ++Y++ +++K RG+ DA++AAC++IACRQ R+ KEI ++ K
Sbjct: 143 LPRTVTDIAKQLYRRADEEKLLRGKQVDAIIAACIFIACRQSKVGRSFKEIVALTR-VPK 201
Query: 181 KEIGRAKEYIVK-----------QLGLETGQSVEMGTIHAGDFMRRFCSNLGM 222
K+IG+ + + L TG++ G A D M RFCS+LG+
Sbjct: 202 KQIGQCFKALSAAFETSAVGGGGALNTTTGETSGAG---AEDLMARFCSHLGL 251
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 125/254 (49%), Gaps = 26/254 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + + D G+TVC +CGLV+E ID EWR F D RVG P
Sbjct: 29 ETLCPECGS-SNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQKS-RVGAP 86
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G LSS+ L W R D R L A
Sbjct: 87 TTNMMHDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGE 146
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D GR+ + + + LY A RQ PR++ E+
Sbjct: 147 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEL 206
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVK 228
+V+ K EI R Y+V++L LE I D ++ RF S LG+N+++ +
Sbjct: 207 ETVSR-VDKDEISRTYRYVVRELNLE---------IEPADPEQYVPRFASELGLNDESER 256
Query: 229 AAQEAVQKSEEFDI 242
A++ ++ ++E I
Sbjct: 257 HARQLLRTAKEQGI 270
>gi|257389069|ref|YP_003178842.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171376|gb|ACV49135.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 327
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 125/245 (51%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+E+ ID EWR F + S ++ RVG PT
Sbjct: 32 CPECS--GTLVVDDEHGETVCEDCGLVVETDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 89 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ +GL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++ EI V
Sbjct: 149 MASAVGLPENVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEIDEV 208
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++LGLE + ++ RF S+L ++++A A++ +
Sbjct: 209 SR-VEKSEIARTYRYVVRELGLEVAPA------DPESYVPRFASSLELSDEAEHRARQLL 261
Query: 235 QKSEE 239
Q ++E
Sbjct: 262 QNAKE 266
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 19/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C T V++D + G+ VC CG V+ES +ID EWR+F +E D R+G P +
Sbjct: 12 CPSCG-STSVMYDKTTGELVCQNCGYVIESDTIDYGREWRSFEDER-DEGKGRMGSPLSY 69
Query: 66 LLADGGLSTVIAKP-------NGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSD 117
D G STVI K N F L +WQ R S +R L A + S+
Sbjct: 70 AKYDKGTSTVIGKASESIKLSNANRRTFY--KLRKWQPRISTAYERNLKFALTELRHASN 127
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG 177
RL + I++ A ++Y++ ++ RGR+ ++++A LY A R+ ++P T+ EI
Sbjct: 128 RLHVSNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISETFE- 186
Query: 178 ATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+KE+G+A + ++LG++ S D++ +F S LG++N+ V A + ++++
Sbjct: 187 VERKEVGKAYRLLCRELGIKILPS------SPSDYIYKFASELGVSNKTVSDAVKLLKEA 240
Query: 238 EE 239
E+
Sbjct: 241 ED 242
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 119/245 (48%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + + + C CGL++E ID EWR F N + + RVG PT
Sbjct: 29 CPECESSS-LTRSPDESEISCEACGLIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 87 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ +Y++ D+ RGR+ + + + LY ACR E PR++ E+ +V
Sbjct: 147 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + EIGR YI ++LGL EM ++ ++ RFCS L + + A E +
Sbjct: 207 SR-VNRMEIGRTYRYISQELGL------EMEPVNPKKYVPRFCSELDLPEEVQAKANEII 259
Query: 235 QKSEE 239
+ E
Sbjct: 260 DTTAE 264
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 11/232 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D S G+ VC CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI V+ KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSR-VDKKEIGRSF 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
+I + L L + + D++ +F LG++ + + A E ++++ E
Sbjct: 191 RFIARHLNLTPKKLF----VKPTDYVSKFADELGLSEKVRRRAIELLEEAYE 238
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + ++ +D LGL ++ RA E
Sbjct: 178 VSRVDKKEIGRSFRFIARHLN------LTPKKLFVKPTDYVSKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
+ ++ ++ + G++ L+AA LYIA E + RT +E+ VA R KE I
Sbjct: 232 LLEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKELIE 291
Query: 192 K 192
K
Sbjct: 292 K 292
>gi|407462988|ref|YP_006774305.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046610|gb|AFS81363.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 290
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 19/238 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ EWR+FA E G DP R G PT+ + D GLST
Sbjct: 1 MISDNETGERFCDKCGFVIRETLQSSGPEWRSFAKEGG-TDPTRTGAPTSLTMHDRGLST 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
VI++ N A+G+ LS+S L W +R S+ D+ L A ++ + D+L L
Sbjct: 60 VISQSNRDATGKPLSTSMKSTIERLRTWDSRSKVTSSADKNLRQALGQLSVLKDKLSLSD 119
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
++ ++A+ IY+K + +GR+ AL+AA +Y ACR + PRT+K++ N KK+I
Sbjct: 120 SVNEKASYIYRKALENGLVKGRSISALIAASIYAACRDTETPRTLKDVADAGN-IKKKDI 178
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241
R Y + LE ++M ++ + R S L + ++ + A + +Q ++E +
Sbjct: 179 SRC--YRILHYELE----LKMPVVNPIQCIARISSKLRITEKSKRYAIKVLQVAQEHE 230
>gi|294893167|ref|XP_002774359.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239879707|gb|EER06175.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 298
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 119/255 (46%), Gaps = 28/255 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWRTF++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRLGLV 122
+L GGL T + F ++ L R N DR L K + + D L L
Sbjct: 72 MLHSGGLGTSVG--------FGNTRLARTHMIAVNSENVDRTLNKGHKILRDIMDALALP 123
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I R +I K+++D +G+ L A Y+ACRQE R++KEI + KE
Sbjct: 124 DNIYTRCCQILKQMDDNGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEIRAAQPTVKDKE 183
Query: 183 IGRAKEYIVKQLGLETGQSVE---------------MGTIHAGDFMRRFCSNLGMNNQAV 227
+ + + K L + Q +G + FM R+C+ LG+ +
Sbjct: 184 VAKNFWRLEKMLQKASVQEARTGVGGGAVLGAKVAGLGAVAGDTFMPRYCNRLGI-PECE 242
Query: 228 KAAQEAVQKSEEFDI 242
KAA ++ + +
Sbjct: 243 KAADHVAMQAGRYGL 257
>gi|15920551|ref|NP_376220.1| transcription initiation factor IIB [Sulfolobus tokodaii str. 7]
gi|21363017|sp|Q975S1.1|TF2B_SULTO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|15621334|dbj|BAB65329.1| transcription initiation factor IIB 1 [Sulfolobus tokodaii str. 7]
Length = 308
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 19/237 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD G+ +C+E G V+E +ID+ EWR F E + RVGGP N + D G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTK-ANRKE 195
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
+ R I+++L + S D++ R S LG++ +K A + ++K++E
Sbjct: 196 VARCYRLILRELDINVPVS------DPKDYVTRIGSLLGLSGSTMKMAIDIIEKAKE 246
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 16/244 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ D + G+ VC ECG +++ ID+++E+R F NE+ R G P
Sbjct: 61 CPECESQR-FEEDSAQGELVCVECGTIIDEDRIDDSAEYRAF-NEAEREKKARAGQPLTY 118
Query: 66 LLADGGLSTVIAKPNG----ASGEFLSS--SLGRWQNR-GSNPDRGLILAFKTIATMSDR 118
D G+ST I K +G SGE + L +W R + DR L A + +M
Sbjct: 119 TKHDMGVSTEIGKGSGELYKVSGEKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISN 178
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
L L ++ + +Y+K DQ RGR+ +++++A LYI R++ PRT+ EI S A+G
Sbjct: 179 LNLPESVHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGTPRTLDEI-SDASGI 237
Query: 179 TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
K+EIGRA Y+ ++LGL + D++ RF L ++ + A+ ++++
Sbjct: 238 EKREIGRAYRYVARELGL------RILPAKPQDYVPRFAGKLQLSGEVQARARNILEEAR 291
Query: 239 EFDI 242
E D+
Sbjct: 292 EKDL 295
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 20/244 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ L + +K+ A IY+K Q RGR+ + ++A LY ACR + PRT+ EI SV
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
KKEIGR + + L L S A D++ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 235 QKSE 238
+ +E
Sbjct: 247 RSAE 250
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 12/239 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D S G+ VC CG V+E + +D EWR F + S R G P +
Sbjct: 7 CPICG-STEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I +G L +WQ+R D R L A + ++ L
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLR 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI V+ K
Sbjct: 125 LPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSR-VDK 183
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KEIGR+ +I + L L + + D++ +F LG++ + + A E ++++ E
Sbjct: 184 KEIGRSFRFIARHLNLTPKKLF----VKPTDYVSKFADELGLSEKVRRRAIELLEEAYE 238
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + ++ +D LGL ++ RA E
Sbjct: 178 VSRVDKKEIGRSFRFIARHLN------LTPKKLFVKPTDYVSKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
+ ++ ++ + G++ L+AA LYIA E + RT +E+ VA R KE I
Sbjct: 232 LLEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKELIE 291
Query: 192 K 192
K
Sbjct: 292 K 292
>gi|160331633|ref|XP_001712523.1| tfIIB [Hemiselmis andersenii]
gi|159765972|gb|ABW98198.1| tfIIB [Hemiselmis andersenii]
Length = 344
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 114/231 (49%), Gaps = 23/231 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC ++ D GD +C ECGLVL SH+ID TSEWR FA++ DP R+G P +P
Sbjct: 22 CTDCGSEN-LLEDKKQGDLICFECGLVLTSHNIDFTSEWRCFADDQRGKDPTRIGDPNHP 80
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVA 123
LL + + GA+ L+ L QN+ + DR L +F I ++ L
Sbjct: 81 LLESNSGTLISKGLRGANN--LNERLATTQNQSNLQKTDRFLTQSFSKINLFLEKNFLFK 138
Query: 124 TIKDRANEIYKKVEDQKSSRG---------RNQDAL--LAACLYIACRQEDKPRTVKEIC 172
IK+R E++K D + R R + L +AA ++I R E PRT +EI
Sbjct: 139 GIKERVEELFKSYFDYLTLRSDGSRTRYSLRKDETLSSIAASIFIVSRNEGIPRTFREIY 198
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTI-HAGDFMRRFCSNLGM 222
KKEIG I + L + V++ I + DF+ RFCS LG+
Sbjct: 199 ETTK-VPKKEIGSRVRAIERSL-----RGVKISKIRNTEDFISRFCSKLGL 243
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + ID EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRSY 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 ILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++LG++
Sbjct: 291 EKLGIKV 297
>gi|294953373|ref|XP_002787731.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239902755|gb|EER19527.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 332
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 119/255 (46%), Gaps = 28/255 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWRTF++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRLGLV 122
+L GGL T + F ++ L R N DR L K + + D L L
Sbjct: 72 MLHSGGLGTSVG--------FGNTRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALP 123
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I R +I K+++D +G+ L A Y+ACRQE R++KEI + KE
Sbjct: 124 DNIYTRCCQILKQMDDNGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEIRAAQPTVKDKE 183
Query: 183 IGRAKEYIVKQLGLETGQSVE---------------MGTIHAGDFMRRFCSNLGMNNQAV 227
+ + + K L + Q +G + FM R+C+ LG+ +
Sbjct: 184 VAKNFWRLEKMLQKASVQEARTGVGGGAVLGAKVAGLGAVAGDTFMPRYCNRLGI-PECE 242
Query: 228 KAAQEAVQKSEEFDI 242
KAA ++ + +
Sbjct: 243 KAADHVAMQAGRYGL 257
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 122/247 (49%), Gaps = 26/247 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C C + +++D S + VCS CG VL +D EWR F E G + RVG P
Sbjct: 10 CPICGSES-LIYDPSRAEIVCSNCGYVLAEEIMDLGPEWRAF--EPGQREKRSRVGAPET 66
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+L D GLST I N G +S S L WQ R DR L A +
Sbjct: 67 VMLHDKGLSTDIDWRNKDIHGSDISGSIRTKIYRLRMWQRRMRISDAIDRNLAFALSELD 126
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M +LGL I++ A +Y+K K RGR+ + +++ACLY ACR + PRT+ EI
Sbjct: 127 RMGSQLGLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIED 186
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN----NQAVKA 229
V+ KKEIGR+ Y+ ++L L + + D++ RF LG++ +AVK
Sbjct: 187 VSK-VDKKEIGRSYRYLARELNLRLKPTSPI------DYVIRFGDQLGISEKTKRRAVKI 239
Query: 230 AQEAVQK 236
+A++K
Sbjct: 240 LNQAIEK 246
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 11/230 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC++CG V+E + ID EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCAKCGYVVEENIIDMGPEWRAF-DASQRERRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L RWQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI ++ KKEIGR+
Sbjct: 132 EAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISR-VDKKEIGRSY 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRKAVEILEEA 236
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LGL ++ +A E
Sbjct: 178 ISRVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRKAVE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 ILEEAYRKGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++LG++
Sbjct: 291 EKLGIKV 297
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 118/244 (48%), Gaps = 22/244 (9%)
Query: 6 CSDCKKHTEVVFDHS-AGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
CS+C V HS G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 25 CSECGSSN--VLRHSDQGERICEDCGLVVEESMIDSGPEWRAF-NHQERQKKSRVGAPTT 81
Query: 65 PLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 QTIHDKGLTTQIDWKDKDAYGRSLSSEKRSQMNRLRKWQKRIRTKDAGERNLQFALSEID 141
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LG+ + ++ + +Y++ ++ RGR+ + + A LY CRQE PR+++E+
Sbjct: 142 RMASALGVPQSTREVTSVLYRRALEEDLIRGRSIEGVATAALYAGCRQEGLPRSLEEVTE 201
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ + E+ R YI +LGL E+ I ++ RFCS L + + A+E
Sbjct: 202 VSR-IERIEVSRTYRYISSELGL------EIRPIDPKQYVPRFCSALDLPQEVEAKAKEI 254
Query: 234 VQKS 237
+ ++
Sbjct: 255 IDET 258
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 126/251 (50%), Gaps = 27/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D+ RVG PT
Sbjct: 30 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDSKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI V
Sbjct: 147 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K EI R Y+V++L LE I D ++ RF S+LG++++A + A+
Sbjct: 207 SR-VEKDEIARTYRYVVRELKLE---------IQPADPESYVPRFASDLGLSDEAERRAR 256
Query: 232 EAVQKSEEFDI 242
+ ++E I
Sbjct: 257 SLLDTAKEQGI 267
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 122/244 (50%), Gaps = 21/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 27 VCPECG--GDLVTDSERGETVCAECGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGAPTT 83
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 84 NMMHDKGLSTNIGWQNKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI +
Sbjct: 144 RMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQAGNPRSLDEIDN 203
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R Y+V++L LE + ++ RF S+L ++ +A + A++
Sbjct: 204 VSR-VEKDEVARTYRYVVRELNLEVKPA------DPTSYVPRFASDLDLSEEAERHARDL 256
Query: 234 VQKS 237
++ +
Sbjct: 257 LENA 260
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 135/252 (53%), Gaps = 25/252 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D+ C C K++ ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G P
Sbjct: 13 DSTCGRCGKNS-MLTDNVTGERFCGKCGYVITETLQDSGPEWRSFSKEGG-ADPTRTGAP 70
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKT 111
T+ + D GL+T+I+ N +SG+ L+S+ L W +R ++ D+ L A
Sbjct: 71 TSLAMHDRGLATIISPMNKDSSGKPLTSTMKSTIERLRTWDSRSKVNASSDKNLRQALSE 130
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
++T+ D+L L + ++A+ IY+K ++ +GR+ AL+AA LY ACR + PRT+K++
Sbjct: 131 LSTLKDKLSLSDAVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDTETPRTLKDV 190
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ----AV 227
N KK+I R + ++L L +M + + R S++G+ + AV
Sbjct: 191 SDAGN-IKKKDISRCYRILHQELEL------KMPVVDPVQCVARIASSIGITEKTKRYAV 243
Query: 228 KAAQEAVQKSEE 239
K ++A Q EE
Sbjct: 244 KVLKDA-QAHEE 254
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F +E R GGP + D G +
Sbjct: 32 KIVYDTAHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPN-GASGEFLSSS------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
T I + A+G L+ L +WQ R ++ +R L A + +SD L L +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+K+ A IY+ ++ RGR+ ++++AA +Y+ACR+ PR++ EI +KEI
Sbjct: 151 YVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITR-HTRVNRKEI 209
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
R ++++L +++ T D++ R LG+ QAVK A E + K++E
Sbjct: 210 ARCYRLLLREL------RIKVATTDPVDYVPRIVHGLGLPGQAVKIAIEIINKAKE 259
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 20/243 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 15 CPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 72
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 73 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 132
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ PRT+ EI V
Sbjct: 133 DSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIADV 192
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KKE+GR ++ ++L + + D++ RF S L ++ A E +
Sbjct: 193 SR-VSKKEVGRTYRFLTREL------HIRLPPTSPIDYVPRFASELNLSGVVQSKAIEII 245
Query: 235 QKS 237
++
Sbjct: 246 NQA 248
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 27/248 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F + S ++ RVG PT
Sbjct: 31 CPECS--GQLASDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 88 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 148 MASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEIAAV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K EI R Y+V++L LE I D ++ RF S+LG++++A + A+
Sbjct: 208 SR-VEKDEIARTYRYVVRELKLE---------IQPADPESYVPRFASDLGLSDEAERRAR 257
Query: 232 EAVQKSEE 239
+ ++E
Sbjct: 258 SLLNTAKE 265
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 15/233 (6%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC CG V+E + ID EWR F + S RVG P + LL D GL
Sbjct: 13 TEFIYDPGRGEVVCKVCGYVIEENVIDMGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I SG L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI ++ KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISR-VDKKEIGRSF 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN----NQAVKAAQEAVQK 236
+I + L L + + D++ +F LG++ +A+ +EA +K
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIAILEEAYEK 239
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LGL ++ RA
Sbjct: 178 ISRVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIA 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ ++ + G++ L+AA LYIA ED+ RT +E+ VA R KE +V
Sbjct: 232 ILEEAYEKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLE 197
++L L+
Sbjct: 291 EKLNLK 296
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 119/241 (49%), Gaps = 21/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E +H G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 30 CPECDARLEADSEH--GETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGRQLSTRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIER 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + A LY A RQ PR++ EI V
Sbjct: 147 MASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQAGIPRSLDEIERV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E+ R YI+++L LE + ++ RF S+LG++++ + A+E +
Sbjct: 207 SR-VDRMELTRTYRYIIRELNLEVKPA------DPESYIPRFVSDLGLSDEVERRARELI 259
Query: 235 Q 235
+
Sbjct: 260 E 260
>gi|386002924|ref|YP_005921223.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
gi|357210980|gb|AET65600.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
Length = 337
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 131/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +V D+ + VCS+CGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECGSHA-LVHDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A IY+K D+ RGR+ + + AA LY ACRQ + PRT+ EI V
Sbjct: 159 MASALGLSRNVRETAAVIYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEV 218
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR ++ ++L L+ + + D++ RFCS L + + E +
Sbjct: 219 SR-VSRKEIGRTYRFVSRELALKLMPTSPI------DYIPRFCSGLSLKGEVQAKGIEIL 271
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 272 RQAAEKEL 279
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 122/241 (50%), Gaps = 27/241 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 30 HCPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKD-EKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 NMMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI +
Sbjct: 147 RMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEISA 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K EI R Y+V++L LE I D ++ RF S+LG++++A + A
Sbjct: 207 VSR-VEKDEIARTYRYVVRELKLE---------IQPADPESYVPRFASDLGLSDEAERRA 256
Query: 231 Q 231
+
Sbjct: 257 R 257
>gi|324528353|gb|ADY48903.1| Transcription initiation factor IIB, partial [Ascaris suum]
Length = 181
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 44 WRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN-PD 102
WR+F+ E DP RVG P NPLL LST IA G+S SL Q R N D
Sbjct: 1 WRSFSGEKSGIDPSRVGAPENPLLGSSDLSTSIAVYYGSSE--CDQSLASAQRRTLNGVD 58
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
R + A I MS R+ L +I+D A ++++ V D ++ G+N +A AACLYIACR+E
Sbjct: 59 RQMTEALGVIREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRKE 118
Query: 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFM 213
PRT KE+C+V+ +KKEIGR + ++ L Q I + DFM
Sbjct: 119 GVPRTFKEVCAVSR-VSKKEIGRCFKLAIRSLETNLEQ------ITSADFM 162
>gi|452823058|gb|EME30072.1| transcription initiation factor TFIIB [Galdieria sulphuraria]
Length = 332
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 124/253 (49%), Gaps = 25/253 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V DH+ GD +C CGLV +D SEWR F N+ DP RVGGP NP
Sbjct: 25 CKECGS-DDLVEDHAQGDVICRNCGLVAAERIVDLGSEWRNFENDDSGTDPSRVGGPNNP 83
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVA 123
LL + G STVI + L++ L R QNR S DR L+ AF I+ ++R L
Sbjct: 84 LL-ESGPSTVIGGGAVSDSRSLNARLNRAQNRHNTSKSDRVLLDAFSLISQYAERSYLSQ 142
Query: 124 TIKDRANEIYKKVEDQKSSR---GRNQD-------ALLAACLYIACRQEDKPRTVKEICS 173
+ DRA E++K D + GR + +++AA L+ A + E PRT KE+ S
Sbjct: 143 RVVDRAQELFKLYFDHLTLNPQGGRTRYLKEHETVSVVAASLHWASQIEGVPRTFKEMSS 202
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAG--DFMRRFCSNLGMNNQAVKAAQ 231
+ K + L+ QS+++ ++ DF+ RFC L + + + A
Sbjct: 203 LTQVPKK---------TLSDTYLKMKQSLKLNQLNKSTEDFIGRFCFYLRLPHFFISKAL 253
Query: 232 EAVQKSEEFDIRY 244
+ VQ + D Y
Sbjct: 254 QIVQVCRDVDGVY 266
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 18/236 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F +E R GGP + D G +
Sbjct: 32 KIVYDTTHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPN-GASGEFLSSS------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
T I + A+G L+ L +WQ R ++ +R L A + +SD L L +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+K+ A IY+ ++ RGR+ ++++AA +Y+ACR+ PR++ EI +KEI
Sbjct: 151 YVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITR-HTRVNRKEI 209
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
R ++++L +++ T D++ R LG+ QAVK A E + K++E
Sbjct: 210 ARCYRLLLREL------HIKVTTTDPVDYVPRIVHGLGLPGQAVKIAIEIINKAKE 259
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRSY 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 ILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++LG++
Sbjct: 291 EKLGIKV 297
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 19/233 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VC +CGLV++ + +D EWR F +E D RVG P + D GLST+I
Sbjct: 25 DYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITYTIHDKGLSTMID 83
Query: 78 KPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N A L +WQ + +R L A + S RLGL +++
Sbjct: 84 WRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRDSSRLGLPRSVR 143
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A+ +Y++ + K RGR+ + ++AA LY ACR+ + PRT+ EI V+ +KKE+GR
Sbjct: 144 EAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVSR-VSKKEVGRT 202
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ ++L ++++ D++ RF S LG++ + A E ++ + E
Sbjct: 203 YRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKAIEIIEMAME 249
>gi|294896448|ref|XP_002775562.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881785|gb|EER07378.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 307
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 118/255 (46%), Gaps = 28/255 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWR+F++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRLGLV 122
+L GGL T + F +S L R N DR L K + + D L L
Sbjct: 72 MLHSGGLGTSVG--------FGNSRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALP 123
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I R +I K+++D +G+ L A Y+ACRQE R++KEI + KE
Sbjct: 124 DNIYTRCCQILKQMDDSGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEILAAQPTVKDKE 183
Query: 183 IGRAKEYIVKQLGLETGQSVEM---------------GTIHAGDFMRRFCSNLGMNNQAV 227
+ + + K L + Q G + FM R+C+ LG+ +
Sbjct: 184 VAKNFWRLEKMLQKASVQEARTAAGGGPVSAAKVGGAGAVAGDTFMPRYCNRLGI-PECE 242
Query: 228 KAAQEAVQKSEEFDI 242
KAA ++ + +
Sbjct: 243 KAADHVAMQAGRYGL 257
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 130/248 (52%), Gaps = 24/248 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K++ ++ D G+ C +CG V+ S + EWR+F + G DP R G P++
Sbjct: 10 CLRCGKNS-ILVDEVTGEQFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTGAPSSL 67
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
++ D GLSTVI N ASG+ LS+S L W +R + DR L A +
Sbjct: 68 MIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNK 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D++ + A + ++A IY+K ++K RGR+ A++AA LY ACR + PRT+K++
Sbjct: 128 LKDKVSVPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDVSDA 187
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ----AVKAA 230
AN +K+I R + +L L +M + + + R S L ++ + AVK
Sbjct: 188 AN-VKRKDIARCYRLLHHELEL------KMPVVDSIQCIARISSKLEISEKTKRYAVKVL 240
Query: 231 QEAVQKSE 238
++A ++ E
Sbjct: 241 KDAQERKE 248
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V + G+ + GLVLE ID EWR F + S RVG PT + D GL+T
Sbjct: 45 VVKTADGELIHEPTGLVLEDEHIDRGPEWRAFTH-SERQSKSRVGAPTTQTMHDKGLTTQ 103
Query: 76 IA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVAT 124
I K A G+ +SS L +WQ R D R L A I M+ LG+ +
Sbjct: 104 IDWKDKDAYGQSISSDKRSQMNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRS 163
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
+++ A+ Y++ D+ RGR+ + A LY ACRQE PR++ E+ VA +KEIG
Sbjct: 164 VREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEVAEVAR-VEQKEIG 222
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
R Y+ ++LGL E+ +++ RFCS L ++ + +E +
Sbjct: 223 RTYRYLSQELGL------EIKPADPKEYVPRFCSELALSEAVEQKTREII 266
>gi|241842222|ref|XP_002415383.1| transcription initiation factor iib, putative [Ixodes scapularis]
gi|215509595|gb|EEC19048.1| transcription initiation factor iib, putative [Ixodes scapularis]
Length = 159
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 93/141 (65%), Gaps = 10/141 (7%)
Query: 75 VIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+I K G F S ++QNR S+ DR L+ AF+ I+ M+DR+ L TI DR+N +
Sbjct: 1 MIGKGTG-DASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLTKTIVDRSNLL 59
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192
+K+V D K+ +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K
Sbjct: 60 FKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLILK 118
Query: 193 QLGLETGQSVEMGTIHAGDFM 213
LET SV++ I GDFM
Sbjct: 119 --ALET--SVDL--ITTGDFM 133
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 19/238 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ D EWR+F+ E G +DP R G PT+ + D GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-SDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
+I N +SG+ L+SS L W +R ++ DR L A + + D+L +
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+ ++A IY+K D+ RGR+ AL+A+ LY ACR + PRT+K++ N KK+I
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGN-IKKKDI 178
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241
R + ++L L +M + + R S LG++ + + A + ++ ++E +
Sbjct: 179 ARCYRILHQELEL------KMPVVDPIQCIARIASKLGISEKTKRYAVKVLKTAQEHE 230
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPN 80
G+ + E GL++E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 42 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 100
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 101 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 160
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 161 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 219
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 220 SQELGL------EMRPVDPKKYVPRFSSELELSEEVQSKANEIIETTAE 262
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 124/245 (50%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ + VC +CGLV++ + +D EWR F +E D RVG P
Sbjct: 14 CPECGSE-DLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 71
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 72 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 131
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
S RLGL ++++ A+ +Y++ + K RGR+ + ++AA LY ACR + PRT+ EI V
Sbjct: 132 DSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIAEV 191
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KKE+GR ++ ++L ++++ D++ RF S LG++ + A E +
Sbjct: 192 SR-VSKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKAIEII 244
Query: 235 QKSEE 239
+ + E
Sbjct: 245 EMAME 249
>gi|448418737|ref|ZP_21579914.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
gi|445676131|gb|ELZ28655.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
Length = 335
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 113/226 (50%), Gaps = 19/226 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + G+T C ECGLV+ ID EWR F N + D RVGGPT L D GLSTVI
Sbjct: 52 DETHGETTCIECGLVVTEDEIDRGPEWRCF-NAAEKEDRSRVGGPTTKRLHDDGLSTVID 110
Query: 78 KPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
N A G LSS L W R + D R L A + M+ LGL ++
Sbjct: 111 WQNSDAHGNALSSKKRQQMQRLRTWDERFRSKDAQERNLKHALGEVDRMASALGLPEAVR 170
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A+ +Y++ D RGR+ + + +A LY RQ PR++ E+ +V+ K I RA
Sbjct: 171 ETASVVYRQALDADLLRGRSIEGVASASLYAGARQMGTPRSLSEVTTVSR-VEKLRIQRA 229
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
YI ++LGL VE+ H ++ RF S+L + ++ + E
Sbjct: 230 YSYIAQELGL----GVELADPHT--YVTRFVSDLDVTHEVEQIGHE 269
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 30 CPECGGN--LISDTERGETVCTECGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 87 MMHDKGLSTNIDWRDKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++ E+ V
Sbjct: 147 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDELTDV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++LGLE + ++ RF S+L ++ +A + A+E +
Sbjct: 207 SR-VEKDEIARTYRYVVRELGLEVRPA------DPESYVPRFTSDLELSEEAERRARELL 259
Query: 235 QKSEE 239
++E
Sbjct: 260 ANAKE 264
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 119/242 (49%), Gaps = 21/242 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVCSECGLV+E ID EWR F + D RVG PT
Sbjct: 30 VCPEC--GGDLVTDSERGETVCSECGLVVEEDEIDPGPEWRAFDSAEKDKKS-RVGAPTT 86
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 87 NMMHDKGLSTNIGWQNKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI
Sbjct: 147 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQAGNPRSLDEIER 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ + E+ R Y+V++L LE + ++ RF S+L ++ + + A+E
Sbjct: 207 VSR-IDRMELTRTYRYVVRELNLEVKPA------DPESYVPRFVSDLDLSEEVSRQAREL 259
Query: 234 VQ 235
++
Sbjct: 260 IE 261
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRTLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A KKEIGR+
Sbjct: 132 EAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRSY 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSERVRRRAIEILEEA 236
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSERVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 ILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++LG++
Sbjct: 291 EKLGIKV 297
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 19/210 (9%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T C C K ++V D ++G+ C+ CG V+ D +EWRTF+NE ++ RVG
Sbjct: 9 VTQQKCPSCGKR-KIVTDDTSGELFCAYCGFVINEKLEDTGAEWRTFSNE--ESSRTRVG 65
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
T+ + D GLST+I K N ++G+ LS S L W +R S+ DR L A
Sbjct: 66 AGTSLTMHDMGLSTIIGKANKDSTGKPLSGSMKSSIERLRTWDSRTQAHSSADRNLRQAL 125
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D+L L + ++A IY+K ++K RGR+ L+AACLY ACR + PRT+
Sbjct: 126 NEMDKLKDKLALADVVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLD 185
Query: 170 EICSVANGAT--KKEIGRAKEYIVKQLGLE 197
++ ANG +K++ R I ++L L+
Sbjct: 186 DM---ANGINIRRKDVARCYRLIFRELELK 212
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 124/249 (49%), Gaps = 27/249 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPEC--NGSLLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI
Sbjct: 146 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAG 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K EI R Y+V++L LE I D ++ RF S+L ++ + + A
Sbjct: 206 VSR-VEKDEIARTYRYVVRELSLE---------IQPADPESYVPRFASDLDLSEEVERRA 255
Query: 231 QEAVQKSEE 239
++ +Q +++
Sbjct: 256 RQLLQNAKQ 264
>gi|332796366|ref|YP_004457866.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332694101|gb|AEE93568.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 304
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 19/249 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D + ++VFD G+ +C+E G V+E ID+ EWR F E + RVG
Sbjct: 1 MSDKPQDNICPPDKIVFDADRGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVG 59
Query: 61 GPTNPLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
GP N + D GLST+I K A G L +WQ R S+ DR L A
Sbjct: 60 GPLNQTIHDRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAM 119
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + + LGL ++KD A IY+K ++ RGR+ ++++AA +Y +CR+ RT+
Sbjct: 120 NELERIGNLLGLPKSVKDEAALIYRKAVEKGLVRGRSIESVVAASIYASCRRIKIARTLD 179
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
EI A +KE+ R ++++L +VE+ D++ R S LG++ +K
Sbjct: 180 EIAQYTK-ANRKEVARCYRLLLREL------NVEVPVSDPKDYVTRIGSLLGLSGATMKL 232
Query: 230 AQEAVQKSE 238
A E ++K++
Sbjct: 233 AAEILEKAK 241
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 125/278 (44%), Gaps = 54/278 (19%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVI-AKPNGASGEFLSSS---------------------------------- 90
+ D GL+T I K A G LSS
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIXK 141
Query: 91 ------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
L +WQ R D R L A I M+ LG+ ++++ A+ IY++ ++
Sbjct: 142 RSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDL 201
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQS 201
RGR+ + + A LY ACRQE PR++ E+ V+ +KEIGR YI ++LGL
Sbjct: 202 IRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSR-VPQKEIGRTYRYISQELGL----- 255
Query: 202 VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
E+ + F+ RF S+L ++ + A E + S E
Sbjct: 256 -ELKPVDPKQFVPRFASSLELSEEVQSKATEIIDVSAE 292
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 48 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 106
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 107 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 166
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + + LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 167 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 225
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 226 SQELGL------EMKPVDPKKYVPRFSSELDLSKEVQSKANEIIETTAE 268
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ T VV D + VC ECGLVL ID EWR F + + RVG P
Sbjct: 21 CPDCETET-VVHDPDRRELVCEECGLVLSDEPIDYGPEWRAF-DAREHEELSRVGAPLTQ 78
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNP---DRGLILAFKTIAT 114
+ D GL+T I N A+G + + L WQ R +R L A I
Sbjct: 79 SMHDRGLTTTIDWRNRDANGHSMDAGKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDR 138
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LG+ +K+ A+ IY++ D+ RGR+ + + + LY++CR++D PR+++E+ +V
Sbjct: 139 MVSALGVPKPVKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKDDIPRSLEEVTAV 198
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++EIGR YI +L + + + F+ RFCS L ++++ A + +
Sbjct: 199 SR-VDQREIGRTYRYIADEL------DINLEPTNPRQFVPRFCSELDVSSEVETTAIDII 251
Query: 235 QKSEEF 240
++ E
Sbjct: 252 DETTEL 257
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+TVC+ CGLV+E+ ID EWR F + D RVG PT
Sbjct: 31 CPECGGR--LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTTN 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A+ IY++ D+ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 148 MASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEIATV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y+V++LGL E+ ++ RF S+L ++ +A + A++ +
Sbjct: 208 SR-VGKMELTRTYRYVVRELGL------EIQPADPASYVPRFASDLELSEEAERRARQLL 260
Query: 235 QKSEEFDI 242
+ +++ I
Sbjct: 261 ETAKDEGI 268
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 21/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + D G+TVC+ CGLV+E+ ID EWR F + D RVG PT
Sbjct: 30 VCPECGGR--LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTT 86
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 87 NMMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL ++++ A+ IY++ D+ GR+ + + + LY A RQ PR++ EI +
Sbjct: 147 RMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEIAT 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R Y+V++LGL E+ ++ RF S+L ++ +A + A++
Sbjct: 207 VSR-VGKMELTRTYRYVVRELGL------EIQPADPASYVPRFASDLELSEEAERRARQL 259
Query: 234 VQKSEEFDI 242
++ +++ I
Sbjct: 260 LETAKDEGI 268
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 22/246 (8%)
Query: 4 AFCSDCKKHTEVVFDHS-AGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
A C +C ++ V HS G+ +C +CGLVLE ID EWR F ++ RVG P
Sbjct: 24 ATCPEC--DSDNVVQHSDPGERICKDCGLVLEESMIDSGPEWRAFDHQERQQKS-RVGAP 80
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I N A G +SS L +WQ R D R L A
Sbjct: 81 TTQTMHDKGLTTQIDWKNEDAYGRSISSEKRSQMNRLRKWQTRIRTKDAGERNLQFALSE 140
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LG+ +++ + IY++ + RGR+ + + A LY CRQE PR+++EI
Sbjct: 141 IDRMASALGVPRAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEI 200
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ + EI R YI +LGL E+ I ++ RF S L + + A
Sbjct: 201 TEVSR-IERIEISRTYRYISNELGL------ELRPIDPKQYVPRFTSKLELPQEVETKAN 253
Query: 232 EAVQKS 237
E + ++
Sbjct: 254 EIIDET 259
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +CK ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TESVCPECKSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 212 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLTLKGEVQSRA 264
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 265 VEILRQAAEREL 276
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 55 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 113
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +SS L +WQ R D R L A I M+ LG+ ++++ A+
Sbjct: 114 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 173
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + + LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 174 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 232
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 233 SQELGL------EMKPVDPKKYVPRFSSELELSKEVQSKANEIIETTAE 275
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 122/241 (50%), Gaps = 19/241 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
S C + +++FDH G+ VC E G V+E IDE +EWR F E + R GGP
Sbjct: 19 VSKCPPN-KIIFDHGKGEYVCLETGEVIEERVIDERAEWRAFTPEERERR-ARTGGPITG 76
Query: 66 LLADGGLSTVIAKPNG-ASGEFLS------SSLGRWQNRG---SNPDRGLILAFKTIATM 115
+ D G +T I + ASG + L +WQ R S+ DR L A + +
Sbjct: 77 TVHDMGFATSIDYADKDASGRRIIEKKAQLQKLRKWQARTRIQSSVDRNLAQALNELERI 136
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 175
++ L L +++ A IY+ ++ RGR+ ++++AA +Y+ACR+ PR++ EI
Sbjct: 137 AELLNLPTHVREEAARIYRMAVEKGLVRGRSIESVIAAAVYVACREARVPRSLDEITKYT 196
Query: 176 NGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
+KEI R ++++LG +++ + DF+ R LG++ + +K A E +
Sbjct: 197 R-IPRKEIARCYRLLLRELG------IKVTAVDPIDFIPRIAHALGLSGEIIKNATEILN 249
Query: 236 K 236
K
Sbjct: 250 K 250
>gi|354612022|ref|ZP_09029974.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191600|gb|EHB57106.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 317
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 123/236 (52%), Gaps = 19/236 (8%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D RVG PT + D GLST
Sbjct: 30 VVQDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKDQKS-RVGAPTTNTMHDKGLST 88
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS+ L +W R D R L A I M+ GL
Sbjct: 89 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASAQGLPD 148
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
++++ A+ IY++ ++ GR+ + + +C+Y A RQ PR++ EI V+ K EI
Sbjct: 149 SVRETASVIYRRALEEDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIADVSR-VEKAEI 207
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
R Y++++LGLE + ++ RF S+L ++++A A+E ++ +++
Sbjct: 208 ARTYRYVIRELGLEVAPA------DPESYVPRFASSLELSDEASHRARELLKTAKD 257
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 15/203 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C ++V D + G+ CS+CGLV+ D +EWR+F+NE G+ R G T+
Sbjct: 12 CPSCGDK-KMVTDQTTGELFCSKCGLVVTDKIADTGAEWRSFSNEEGNK--ARTGAGTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N A+G+ LS+S L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGAANKDATGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDK 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L L + ++A IY+K ++K RGR+ L+AACLY +CR + PRT+ +I
Sbjct: 129 LKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAKG 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLE 197
N +K++ R I ++L L+
Sbjct: 189 IN-IRRKDVARCYRLIFRELELK 210
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 25/236 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + G+TVCS+CGLV++ ID EWR F ++ D RVG PT ++ D GLST I
Sbjct: 44 DTAHGETVCSDCGLVVDEDEIDHGPEWRAFDSKEKDQKS-RVGAPTTNMMHDKGLSTNIG 102
Query: 78 -KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
+ A G LSS L W R D R L A I M+ LGL ++
Sbjct: 103 WQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASGLGLPDNVR 162
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A+ IY++ D GR+ + + + LY A RQ PR++ EI SV+ K EI R
Sbjct: 163 ETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEIASVSR-VDKDEIART 221
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
Y+V++L LE I D ++ RF S+L +++++ + A++ +Q ++E
Sbjct: 222 YRYVVRELKLE---------IQPADPEQYVPRFASDLDLSDESERRARKLLQNAKE 268
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 27/249 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGS--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI
Sbjct: 146 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAG 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K EI R Y+V++L LE I D ++ RF S+L ++ + + A
Sbjct: 206 VSR-VEKDEIARTYRYVVRELSLE---------IQPADPESYVPRFASDLDLSEEVERRA 255
Query: 231 QEAVQKSEE 239
++ +Q +++
Sbjct: 256 RQLLQNAKQ 264
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTK-ANRKE 196
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L V + D++ R + LG++ + +K A E + K++
Sbjct: 197 VARCYRLLLREL------DVSVPVSDPKDYVTRIANLLGLSGRVMKTAAEIIDKAK 246
>gi|55376477|ref|YP_134329.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448690641|ref|ZP_21695802.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229202|gb|AAV44623.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445776603|gb|EMA27580.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 320
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 119/244 (48%), Gaps = 21/244 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C+ H D +G+ C CGLV E + ID EWR F +E D + RVG P
Sbjct: 24 DNICPECQGHITRTSD--SGEATCESCGLVFEDNPIDHGPEWRAFTSEERD-EKSRVGAP 80
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T L+ D GLST I + A G+ +S L W R D R L A
Sbjct: 81 TTQLMHDKGLSTTIGWQDKDAYGQAVSGRKRAQLQRLRTWDERFRTKDAHERNLKQALGE 140
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I+ M+ LGL ++++ A +Y++ +Q GR+ + + A LY A RQ PR + E
Sbjct: 141 ISRMASALGLPESVRETAGVLYRRAVEQNLLPGRSIEGMSTASLYAAARQHGMPRPLTEF 200
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K I RA Y+ ++LGLE M ++ +F S+L ++++A + ++
Sbjct: 201 ADVSR-VEKIRIQRAYRYLSRELGLEIEPEDPM------QYIPQFASSLDVSDEAERRSR 253
Query: 232 EAVQ 235
E ++
Sbjct: 254 ELLE 257
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+ S+D EWR F ++ D RVG PT
Sbjct: 57 CPECAGN--VVVDDEHGETVCDDCGLVITEDSVDRGPEWRAFDSQEKDQKS-RVGAPTTN 113
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LSS+ L +W R D R L A I
Sbjct: 114 TMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 173
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + +C+Y A R PR++ EI V
Sbjct: 174 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEISEV 233
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI ++L S+E+ ++ RF S LG++++A A++ +
Sbjct: 234 SR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFGSELGLSDEAKMRARQLL 286
Query: 235 QKSEE 239
+ ++E
Sbjct: 287 KNAKE 291
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 23/234 (9%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+VFD G+ +C+E G VLE +++ EWR F E + R+GGP +P + D GL+T
Sbjct: 26 IVFDPERGEYICTETGEVLEQKLVNQGPEWRAFTPEEKEKRS-RIGGPLSPTVHDRGLTT 84
Query: 75 VI-AKPNGASG---------EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGL 121
+I + ASG EFL +WQ R S+ DR L A + +S++L L
Sbjct: 85 LIDWRDRDASGKKLEPKKRLEFLRYR--KWQIRSRIQSSIDRNLAQAMNELDRLSNQLHL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+++ A IY+K ++ RGR+ ++++AA +Y+ACR + PRT+ EI S+ A +K
Sbjct: 143 NRAVREEAAVIYRKAVEKGLVRGRSIESVIAASVYVACRLKKLPRTLDEI-SLHTRANRK 201
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
EI R +VK+L L+ + + D++ R S L ++ +A+ A V+
Sbjct: 202 EIARCYRLLVKELQLKVPIADPI------DYIPRMGSLLDLSGKAMNIAARIVK 249
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + VV D G+T+C +CGLV+ S+D EWR F + D RVG PT
Sbjct: 70 VCPECSGN--VVADDEHGETICDDCGLVITEDSVDRGPEWRAFDAKEKDQKS-RVGAPTT 126
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I + A G LSS+ L +W R D R L A +
Sbjct: 127 NTMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEVD 186
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI
Sbjct: 187 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAE 246
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A++
Sbjct: 247 VSR-VPKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESTLRARQL 299
Query: 234 VQKSEE 239
+Q ++E
Sbjct: 300 LQNAKE 305
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 124/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V D+ G+TVC ECGLV+E +D EWR F D+ RVG P
Sbjct: 34 EQICPECGGN--LVQDNERGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAP 90
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G+ LS L W R D R L A
Sbjct: 91 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGE 150
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ + GR+ + + A LY A R D PR++ E+
Sbjct: 151 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDEL 210
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K E+ R YIV++L L E+ ++ RF S LG++++A + A+
Sbjct: 211 EKVSR-VEKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELGLSDEAERQAR 263
Query: 232 EAVQKSEE 239
E ++ ++E
Sbjct: 264 ELLRGAKE 271
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 129/249 (51%), Gaps = 22/249 (8%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DCK H + +DH + VC++CGLVLE + +D EWR F + +N R G P +
Sbjct: 16 CPDCKGTHLKRDYDH--AEIVCADCGLVLEDNIVDTGPEWRAF-DMQQENALARAGPPMS 72
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIA 113
L D GLST I+ N G +S+ + +WQ R + +R + +A + +
Sbjct: 73 TTLPDKGLSTEISPTNRDYYGRSISNKNQSMLFRMRKWQRRARASKSAERNMAVAMREMQ 132
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
++ L L I++ A IY++ ++S GR + + A LY ACRQE PRT+ EI S
Sbjct: 133 AVATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTLTEI-S 191
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
+ ++KEI R + +VK L + + + D++ R CS L ++ + AA++
Sbjct: 192 RHSRYSRKEISRTYQVMVKALKMHSMPPL------PEDYLPRICSKLELSPKVEGAARDL 245
Query: 234 VQKSEEFDI 242
++ +++ +
Sbjct: 246 LRAAQDVPL 254
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 27/249 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + V+ D G+TVC+ECGLV+E S+D EWR F ++ D RVG PT
Sbjct: 31 VCPECGGN--VISDEGRGETVCAECGLVVEEDSVDRGPEWRAFDSKEKDQKS-RVGAPTT 87
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G L S L W R D R L A I
Sbjct: 88 KMMHDKGLSTNIGWQDKDAYGNTLGSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 147
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D GR+ + + + +Y A RQ PR++ E+ +
Sbjct: 148 RMASALGLPKNVRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQTGVPRSLDEVAA 207
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ + E R YIV++LGLE I D ++ RF S+L +++++ + A
Sbjct: 208 VSR-IDEMEFKRTYRYIVRELGLE---------IQPADPLSYVSRFASDLDISDESERRA 257
Query: 231 QEAVQKSEE 239
++ ++ ++E
Sbjct: 258 KDLLKTAKE 266
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 27/249 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGA--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI
Sbjct: 146 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAG 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K EI R Y+V++L LE I D ++ RF S+L ++ + + A
Sbjct: 206 VSR-VEKDEIARTYRYVVRELSLE---------IQPADPESYVPRFASDLDLSEEVERRA 255
Query: 231 QEAVQKSEE 239
++ +Q +++
Sbjct: 256 RQLLQNAKQ 264
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 120/244 (49%), Gaps = 20/244 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ L + +++ A IY+K Q RGR+ + ++A LY ACR + PRT+ EI SV
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
KKEIGR + + L L S A D++ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 235 QKSE 238
+ +E
Sbjct: 247 RDAE 250
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPTN 64
C C K ++V D+ +G+T CS+CG VL + EWR+F +E GD R G PT+
Sbjct: 12 CPRCAKG-KLVTDNESGETFCSKCGFVLTEKLQEAGPEWRSFTQDEHGDR--ARAGAPTS 68
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG L+S+ L W +R P DR AF +
Sbjct: 69 LTMHDMGLATIINPANKDASGRPLTSTMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 128
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+ D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR PR +K++
Sbjct: 129 RLKDKLSISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTSTPRNLKDVEQ 188
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
AN +K+I R +VK+L L M + + R S +G+ + + A +
Sbjct: 189 AAN-IKRKDIARCYRLLVKELDL------HMPVTDSVQCVARIASKIGIQEKTKRFATKV 241
Query: 234 VQKSEEFDI 242
+++++E ++
Sbjct: 242 LKRAQENEV 250
>gi|433421465|ref|ZP_20405775.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432198878|gb|ELK55114.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 294
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSK-SRVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++ EI
Sbjct: 153 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 212
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A++
Sbjct: 213 VSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARQL 265
Query: 234 VQKSEE 239
++ ++E
Sbjct: 266 LKNAKE 271
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 20/251 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C K ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G
Sbjct: 12 TATTCGRCGKKG-MMTDNVTGERFCGKCGYVITEILSDSGPEWRSFSKEGG-TDPTRTGA 69
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS---NPDRGLILAFK 110
PT+ + D GL+T+I N +SG+ L+SS L W +R + DR L A
Sbjct: 70 PTSLTIHDRGLATIINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHESADRNLRQALS 129
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
++ + D+L L + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K+
Sbjct: 130 ELSRLKDKLSLSDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKD 189
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ N KK+I R + ++L L +M + + R S LG++ + + A
Sbjct: 190 VSDAGN-IKKKDIARCYRLLHRELDL------KMPVVDPIQCVARIASKLGISEKTKRFA 242
Query: 231 QEAVQKSEEFD 241
+ ++ ++E +
Sbjct: 243 VKVLKTAQEHE 253
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVC++CGLV+E +D EWR F + S ++ RVG PT
Sbjct: 29 HCPECGGR--LITDEEHAETVCTDCGLVVEEDEVDRGPEWRAF-DASEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 NMMHDQGLSTNIGWQNKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 206 VSR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFISDLDLSDETERMAREL 258
Query: 234 VQKSEE 239
++ + +
Sbjct: 259 LESARQ 264
>gi|389625125|ref|XP_003710216.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351649745|gb|EHA57604.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440464829|gb|ELQ34194.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490541|gb|ELQ70086.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 371
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 112/200 (56%), Gaps = 11/200 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC T + + S+GD VC+ECGLV+ + +D SEWRTFAN+ +DP RVG N
Sbjct: 24 CNDCGVPTLLQEEVSSGDIVCTECGLVVGARIVDMGSEWRTFANDEAGDDPSRVGDAGNE 83
Query: 66 LLADGGLSTVI--AKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRLG 120
+ L T + + GAS + + S N+ ++G + I + D++
Sbjct: 84 IYGPSALETKVDMRRDQGASYKIMKSL--NAANKKIQNEKGQAAINAGMAKIKDLVDKIH 141
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ +A ++++VE+ K+ +G++ DA +A C++IACR E PRT +EI ++ N +K
Sbjct: 142 GGGNVIKQAQSLFREVEEAKALKGKSADAAVAGCIFIACRMEKVPRTFREIHALTN-VSK 200
Query: 181 KEIGR---AKEYIVKQLGLE 197
KEIGR A E VK++ E
Sbjct: 201 KEIGRTYKALEEYVKKVNYE 220
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 27/249 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGA--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI
Sbjct: 146 RMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAG 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K EI R Y+V++L LE I D ++ RF S+L ++ + + A
Sbjct: 206 VSR-VEKDEIARTYRYVVRELSLE---------IQPADPESYVPRFASDLDLSEEVERRA 255
Query: 231 QEAVQKSEE 239
++ +Q +++
Sbjct: 256 RQLLQNAKQ 264
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 26/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D G+TVC ECGLV+E ++D EWR F + D+ RVG PT
Sbjct: 35 CPECGS-TNLVNDSEHGETVCEECGLVVEEDAVDRGPEWRAFDSSERDSKS-RVGAPTTN 92
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 93 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 152
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + + LY A R PR++ EI +V
Sbjct: 153 MASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEITNV 212
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K EI R Y+V++L LE I D ++ RF S+L +++++ + A+
Sbjct: 213 SR-VGKDEISRTYRYVVRELKLE---------IEPADPEQYVPRFASDLDLSDESERHAR 262
Query: 232 EAVQKSEEFDI 242
+ ++ ++E I
Sbjct: 263 QLLKTAKEQGI 273
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC+ECGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDDEHAETVCTECGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 207 SR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 259
Query: 235 QKSEE 239
+ + +
Sbjct: 260 ESARQ 264
>gi|433639269|ref|YP_007285029.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377441|ref|ZP_21560137.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433291073|gb|AGB16896.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655385|gb|ELZ08230.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 326
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+TVC++CGLV+ S+D EWR F + S N+ RVG PT
Sbjct: 31 CPECSG--QLVADDEHGETVCADCGLVVAEDSVDRGPEWRAF-DASEKNEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ +GL +++ A+ IY++ ++ GR+ + + AC+Y A RQ PR++ EI V
Sbjct: 148 MASAVGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++LGLE + ++ RF S L +++++ A+ +
Sbjct: 208 SR-VEKNEIARTYRYVVRELGLEVQPA------DPESYVPRFASGLDLSDESEHRARSLL 260
Query: 235 QKSEE 239
+ ++E
Sbjct: 261 KNAKE 265
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 19/238 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ D EWR+F+ E G DP R G PT+ + D GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-LDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
+I N +SG+ L+SS L W +R ++ DR L A + + D+L +
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+ ++A IY+K D+ RGR+ AL+A+ LY ACR + PRT+K++ N KK+I
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGN-IKKKDI 178
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241
R + ++L L +M + + R S LG++ + + A + ++ ++E +
Sbjct: 179 ARCYRILHQELEL------KMPVVDPIQCIARIASKLGISEKTKRYAVKVLKTAQEHE 230
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
+C +C ++ D +TVC++CGLV+E ID EWR F D RVG PT
Sbjct: 27 YCPECGGR--LISDTEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTT 83
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 84 KMMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +
Sbjct: 144 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 203
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 204 VSR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMAREL 256
Query: 234 VQKSEE 239
++ + +
Sbjct: 257 LESARQ 262
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 124/248 (50%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V D+ G+TVC ECGLV+E +D EWR F D+ RVG P
Sbjct: 33 EQVCPECGGN--LVQDNEHGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAP 89
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G+ LS L W R D R L A
Sbjct: 90 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGE 149
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ + GR+ + + A LY A R D PR++ E+
Sbjct: 150 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDEL 209
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K E+ R YIV++L L E+ ++ RF S LG++++A + A+
Sbjct: 210 EKVSR-VEKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELGLSDEAERQAR 262
Query: 232 EAVQKSEE 239
E ++ ++E
Sbjct: 263 ELLRGAKE 270
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 11/223 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ +C CG V+E + +D EWR F + S RVG P + LL D GL
Sbjct: 13 TEFIYDPGRGEIICKVCGYVIEENVVDTGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I SG L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y +CR PRT+ EI ++ KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISR-VDKKEIGRSF 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+I + L L + + D++ +F LGM+ + + A
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGMSERVRRRA 229
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LG+ ++ RA
Sbjct: 178 ISRVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGMSERVRRRAIA 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ D+ + G++ L+AA LYIA ED+ RT +E+ VA R KE +V
Sbjct: 232 ILEEAYDRGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLE 197
+L L+
Sbjct: 291 DKLNLK 296
>gi|435851445|ref|YP_007313031.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
gi|433662075|gb|AGB49501.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
Length = 337
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 130/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + VCSECGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRN-LVQDYERAELVCSECGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI V
Sbjct: 159 MASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEV 218
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR +I ++L S+++ D++ RFCS L + + E +
Sbjct: 219 SR-VSRKEIGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLNLKGEVQSKGVEIL 271
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 272 RQASEKEL 279
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 11/227 (4%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V+D G+ +C+ CG V++ + ID EWR F + S R G P + LL D GLST
Sbjct: 16 VYDPERGEVICANCGFVIQENMIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLSTD 74
Query: 76 IAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
I G L +WQ+R D R L A + + RL L +++ A
Sbjct: 75 IGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEEAA 134
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
+Y++ + RG++ ++++AAC+Y ACR PRT+ EI +A KKEIGR+ +I
Sbjct: 135 RLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADIAK-VDKKEIGRSFRFI 193
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+ L L + + D++ +F LG++ + + A E ++K+
Sbjct: 194 ARNLNLTPKKLF----VKPTDYVNKFADELGLSERTRRRAIELLEKA 236
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL + RA E
Sbjct: 178 IAKVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSERTRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
+ +K + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 LLEKAYGMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEVARVTEVTVRNRYKE-MV 290
Query: 192 KQLGLE 197
++LGL+
Sbjct: 291 EKLGLK 296
>gi|305663777|ref|YP_003860065.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
gi|304378346|gb|ADM28185.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
Length = 315
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 19/239 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V+D G+ +C++ G V+ H ID EWR F E + R G P N L D GLST
Sbjct: 22 IVYDEVRGEWICADSGEVIAEHVIDRGPEWRAFTAEERERRS-RAGAPINIALHDSGLST 80
Query: 75 VI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
VI ++G L + +W +R S DR ++ A + ++D+L L
Sbjct: 81 VIDWYDRDSAGRRLDLKRRLELIRIRKWHSRTRIQSTIDRNIVQAMNELERIADQLNLPR 140
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
I + A IY++ +++ RGR ++++AA LY ACR PRT+ EI +KE+
Sbjct: 141 VIVEEATMIYRRAVERELVRGRAIESMVAAALYAACRIHGIPRTLDEISKYTKSG-RKEV 199
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R +V++L S+ + + A ++ +R S LG++ VK A + ++++ + +
Sbjct: 200 ARCYRLLVREL------SLRIPIVDAAEYAQRIASMLGLSGATVKTAIDIIRRARDMGV 252
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVCS+CGLV+E ID EWR F + D + RVG PT
Sbjct: 30 HCPECGGR--LISDDEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 207 VSR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMAREL 259
Query: 234 VQKSEE 239
++ + +
Sbjct: 260 LESARQ 265
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 31 CPECGGR--LVSDTEHAETVCDDCGLVVEEGEIDHGPEWRAF-NASEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LS+ L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 148 MASALGLPKSVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEITAV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGLE + +++ RF S+L ++++ + A+ +
Sbjct: 208 SR-VEKDEIARTYRYVIRELGLEVQPA------DPENYVPRFASDLDLSDETERRARSLL 260
Query: 235 QKSEEFDI 242
++E I
Sbjct: 261 STAKESGI 268
>gi|399949697|gb|AFP65355.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 343
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 112/220 (50%), Gaps = 24/220 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D GD VC ECG+VL H +D TSEWR F+ ++ +DP+R+G P + LL + T+I+
Sbjct: 32 DMKQGDIVCKECGMVLTGHIVDFTSEWRIFSEDNKKSDPIRIGDPLHELL-EKNPGTLIS 90
Query: 78 KPNGASG-EFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYK 134
K G G L+ L + QNRG+ DR L F I +++ L IK R E +K
Sbjct: 91 K--GLKGSNILNEKLLKTQNRGTVQKTDRFLTQVFSKIGLFLEKICLFMGIKKRVEEFFK 148
Query: 135 KVEDQKSSR---GRNQDAL--------LAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
D + R R++ +L +AA ++I R E PRT KEI S A G +KK +
Sbjct: 149 LYFDYLTLRTDGTRSRYSLRKNETVSSIAASIFIVSRNEKIPRTFKEI-SEATGVSKKAL 207
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIH-AGDFMRRFCSNLGM 222
I + L + + +H DF+ RFCS LG+
Sbjct: 208 SARVRAIERSL-----RGTNISKLHNTDDFVSRFCSKLGL 242
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTK-ANRKE 196
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L V + D++ R + LG++ +K A E + K++
Sbjct: 197 VARCYRLLLREL------DVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEETVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + A LY + R PR++ E+
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDELEK 212
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R Y+V++L L E+ ++ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYVVRELKL------EIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 234 VQKSEEFDI 242
++ ++E I
Sbjct: 266 LRDAKETGI 274
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTK-ANRKE 196
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L V + D++ R + LG++ +K A E + K++
Sbjct: 197 VARCYRLLLREL------DVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 19/235 (8%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V + G+ + GL+LE ID EWR F N+S RVG P + D GL+T
Sbjct: 80 VVRTAEGELIHEPTGLILEDDQIDRGPEWRAF-NQSERQSKSRVGAPITQTMHDKGLTTQ 138
Query: 76 IA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVAT 124
I + A G LSS L +WQ R D R L A I MS LG+ +
Sbjct: 139 IDWRSKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRMSSALGVPRS 198
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
+++ A+ +Y++ + RGR+ + + A LY ACRQE PR++ E+ V+ KEI
Sbjct: 199 VREVASVMYRRALSEDLIRGRSIEGMSTAVLYAACRQEGIPRSLSEVTEVSR-VENKEIA 257
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
R Y+ ++L L EM + ++ RFCS L ++ + A+E + S E
Sbjct: 258 RTYRYVSQELEL------EMRPVDPKKYLPRFCSQLDVSERIQSKAEEIIDTSAE 306
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 15/233 (6%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ +C CG V+E + +D EWR F + S RVG P + LL D GL
Sbjct: 13 TEFIYDPGRGEIICKVCGYVIEENVVDMGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I SG L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLPRHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y +CR PRT+ EI ++ KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISR-VDKKEIGRSF 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN----NQAVKAAQEAVQK 236
+I + L L + + D++ +F LG++ +A+ +EA +K
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSERVRRRAIAILEEAYEK 239
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LGL ++ RA
Sbjct: 178 ISRVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSERVRRRAIA 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ ++ + G++ L+AA LYIA ED+ RT +E+ VA R KE +V
Sbjct: 232 ILEEAYEKGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLE 197
+L L+
Sbjct: 291 DKLNLK 296
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 16 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 74
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 75 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 134
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 135 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTK-ANRKE 193
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L V + D++ R + LG++ +K A E + K++
Sbjct: 194 VARCYRLLLREL------DVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 243
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTK-ANRKE 196
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L V + D++ R + LG++ +K A E + K++
Sbjct: 197 VARCYRLLLREL------DVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
>gi|21227874|ref|NP_633796.1| transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452210347|ref|YP_007490461.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
gi|332321738|sp|P0CW15.1|TF2B_METMA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|332321739|sp|P0CW14.1|TF2B_METMZ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|14586422|emb|CAC42919.1| transcription factor B (TFB) [Methanosarcina mazei]
gi|20906289|gb|AAM31468.1| Transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452100249|gb|AGF97189.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
Length = 337
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 20/250 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIE 216
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ ++KEIGR +I ++L L+ + + D++ RFCS L + + + E
Sbjct: 217 EVSR-VSRKEIGRTYRFISRELALKLMPTSPI------DYVPRFCSGLNLKGEVQSKSVE 269
Query: 233 AVQKSEEFDI 242
++++ E ++
Sbjct: 270 ILRQASEKEL 279
>gi|20089499|ref|NP_615574.1| transcription initiation factor IIB [Methanosarcina acetivorans
C2A]
gi|24212485|sp|Q8TT29.1|TF2B_METAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19914407|gb|AAM04054.1| archaeal transcription factor B [Methanosarcina acetivorans C2A]
Length = 337
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 20/250 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIE 216
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ ++KEIGR +I ++L L+ + + D++ RFCS L + + + E
Sbjct: 217 EVSR-VSRKEIGRTYRFISRELALKLMPTSPI------DYVPRFCSGLNLKGEVQSKSVE 269
Query: 233 AVQKSEEFDI 242
++++ E ++
Sbjct: 270 ILRQASEKEL 279
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C +++ D G+TVC CGLV+E ID EWR F + D RVG
Sbjct: 24 SDVQCPEC--DGKLISDTERGETVCQGCGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGA 80
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLST I + A G L S L +W R D R L A
Sbjct: 81 PTTNMMHDKGLSTNIDWRDKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 140
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++ E
Sbjct: 141 EIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDE 200
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ V+ K EI R Y+V++LGLE + ++ RF S+L ++ +A + A
Sbjct: 201 LTDVSR-VEKDEIARTYRYVVRELGLEVRPA------DPESYVPRFTSDLELSEEAERRA 253
Query: 231 QEAVQKSEE 239
+E + ++E
Sbjct: 254 RELLANAKE 262
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H G+TVC +CGLV+E+ ID EWR F + D RVG PT
Sbjct: 32 CPECGGRLAADTEH--GETVCMDCGLVVETDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 88
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A+ IY++ D+ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 149 MASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEIATV 208
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y+V++LGL E+ ++ RF S+L ++ ++ + A++ +
Sbjct: 209 SR-VGKMELTRTYRYVVRELGL------EIQPADPASYVPRFASDLDLSEESERRARQLL 261
Query: 235 QKSEEFDI 242
+ +++ I
Sbjct: 262 ETAKDEGI 269
>gi|73668919|ref|YP_304934.1| transcription initiation factor IIB [Methanosarcina barkeri str.
Fusaro]
gi|72396081|gb|AAZ70354.1| Transcription initiation factor IIB (TFIIB) [Methanosarcina barkeri
str. Fusaro]
Length = 337
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 20/250 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIE 216
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ ++KEIGR +I ++L L+ + + D++ RFCS L + + + E
Sbjct: 217 EVSR-VSRKEIGRTYRFISRELALKLMPTSPI------DYVPRFCSGLNLKGEVQSKSVE 269
Query: 233 AVQKSEEFDI 242
++++ E ++
Sbjct: 270 ILRQASEKEL 279
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 27/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ VC +CGLV+E ++D EWR F + D+ RVG PT
Sbjct: 29 CPECDGR--LLTDEEHGELVCGDCGLVVEEANVDRGPEWRAFDSAERDSKS-RVGAPTTK 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS + W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKTLSSRQRQQMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++ EI SV
Sbjct: 146 MASALGLPQAVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIASV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K E+ R Y+V++L LE I D ++ RF S+LG++++A + A+
Sbjct: 206 SR-VDKMELTRTYRYVVRELKLE---------IQPADPEQYVPRFASDLGLSDEAERRAR 255
Query: 232 EAVQKSEEFDI 242
E ++ ++E I
Sbjct: 256 ELLRTAKEAGI 266
>gi|254580795|ref|XP_002496383.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
gi|238939274|emb|CAR27450.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
Length = 346
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 12/246 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKVYPPKIVERFSEGDCVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAA 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I + G + L R Q++ D + F I + D L
Sbjct: 83 NPLLDGNSLSTRIGQGEGGDAR-ATRDLNRAQSKNVLDKKDNEIQAIFIKITMLCDVAEL 141
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A EIYK D ++ +G++ ++++AA + + CR+ RT+ E+ S+ + +K
Sbjct: 142 PKIVKDSAKEIYKLCYDSRALKGKSMESVIAAAILLGCRRAKVARTLTEVQSMIH-VRRK 200
Query: 182 EIGRAKEYIVKQLGLETGQSV------EMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E ++ + + L ++ + +M ++ RFCS+LG+ Q A++
Sbjct: 201 EFSKSLKLMSSILMEKSADGIIKIDRGDMNGATNLSYIPRFCSHLGLPMQLTTASEYTAG 260
Query: 236 KSEEFD 241
K +E +
Sbjct: 261 KCKEIE 266
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 18/239 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F E R GGP + D G +
Sbjct: 28 KIVYDAAHGEYVCQDTGEVIEEKVIDERPEWRAFTPEERGRR-ARTGGPVTAAVHDMGFA 86
Query: 74 TVIAKPN-GASGEFLSSS------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVA 123
T I + A+G L+ L +WQ R ++ +R L A + ++D L L +
Sbjct: 87 TSIDYTDRDAAGRRLTEKKHELVKLRKWQARTRILTSVERNLAQAMNELDRLADVLNLPS 146
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+K+ A IY++ D+ RGR+ ++++AA +Y+ACR+ PR++ EI +KEI
Sbjct: 147 YVKEEAARIYREAVDRGLVRGRSIESVIAAAIYLACREMKVPRSLDEITR-HTRIGRKEI 205
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R ++++L +++ T D++ R LG+ QAVK A E + ++E +
Sbjct: 206 ARCYRLLLREL------RIKVSTTDPADYVPRIVHGLGLPGQAVKLAIEIINTAKEHGV 258
>gi|410670096|ref|YP_006922467.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
gi|409169224|gb|AFV23099.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
Length = 337
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 131/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D+ + VCS+CGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRS-LVQDYERAELVCSDCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI V
Sbjct: 159 MASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEV 218
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR +I ++L S+++ D++ RFCS L + + E +
Sbjct: 219 SR-VSRKEIGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLNLKGEVQSRGVEIL 271
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 272 RQASEKEL 279
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C VV D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 28 CPECGGR--VVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 205 SR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 257
Query: 235 QKSEE 239
+ + +
Sbjct: 258 ESARQ 262
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + A LY + R PR++ E+
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDELEK 212
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YIV++L L E+ ++ RF S LG+++++ + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELGLSDESERQARQL 265
Query: 234 VQKSEE 239
++ ++E
Sbjct: 266 LRDAKE 271
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 124/249 (49%), Gaps = 27/249 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + + D G+TVC ECGLV+E ID EWR F + S ++ RVG PT
Sbjct: 28 VCPECGGN--LASDAEHGETVCEECGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTT 84
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 144
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL ++++ A+ IY++ D+ GR+ + + + LY A RQ PR++ EI +
Sbjct: 145 RMASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIAA 204
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K EI R Y+V++L LE I D ++ RF S+L + ++ + A
Sbjct: 205 VSR-VGKDEIARTYRYVVRELSLE---------IQPADPESYVPRFVSDLDLPDEVERRA 254
Query: 231 QEAVQKSEE 239
++ + ++E
Sbjct: 255 RQLLGTAKE 263
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + A LY + R PR++ E+
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDELEK 212
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YIV++L L E+ ++ RF S LG+++++ + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELGLSDESERQARQL 265
Query: 234 VQKSEE 239
++ ++E
Sbjct: 266 LRDAKE 271
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 23/236 (9%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ G+ C +CG V+ S + EWR F +SG N P R G P++ L+ D GLSTVI
Sbjct: 4 DNVTGEQFCGKCGYVVSEKSNESGPEWRAFQTDSGAN-PARTGAPSSLLIHDMGLSTVIN 62
Query: 78 KPNG-ASGEFLSSS-------LGRWQNR--GSNP-DRGLILAFKTIATMSDRLGLVATIK 126
N A+G+ LS+S L W +R P DR L A + + D++ L +
Sbjct: 63 PINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTRIKDKIALSTNVL 122
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
++A +Y+K ++K RGR+ A++AA +Y ACR + PRT+K++ AN +K+I R
Sbjct: 123 EKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVADAAN-VKRKDIARC 181
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ----AVKAAQEAVQKSE 238
+ +L L +M +++ + R S L ++ + A+K QEA E
Sbjct: 182 YRLLHHELEL------KMPVVNSIQCISRISSKLELSEKIKRHAIKVLQEAQNNKE 231
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 21/242 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 29 HCPECGGR--LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 206 VSR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMAREL 258
Query: 234 VQ 235
++
Sbjct: 259 LE 260
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 28 CPECGGR--VISDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 205 SR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 257
Query: 235 QKSEE 239
+ + +
Sbjct: 258 ESARQ 262
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 18/239 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V AG+TVC +CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGHLGV----EAGETVCGDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+++A +++ +++ RGR+ + AAC+Y ACR R+V+E+C VA AT+
Sbjct: 124 LPNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAK-ATE 182
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
E A + + LGL + +++ RF + L ++ + A+E V + E
Sbjct: 183 SEHHAAYRALNRDLGL------PVAPTDPTEYIPRFATKLDLDRDVERRAREYVADARE 235
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 17/250 (6%)
Query: 2 TDAFCSDCKK--HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRV 59
T F +C E+VFD G+ VC+ CGLV E ID EWR F N R
Sbjct: 8 TGKFTEECPACGSAEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRT 66
Query: 60 GGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGR---WQNR----GSNPDRGLILAFKTI 112
G P L D G+ST+I + SG + + R W R GS +R AF +
Sbjct: 67 GEPVKLRLPDKGISTIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSR-ERNFFQAFLEL 125
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
++ +L L ++++ A IY+K + RGR +++L A ++ AC++ PRT +EI
Sbjct: 126 ENLASKLQLPESVRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIA 185
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+ + EI RA + ++L L+ + D + RF S LG++ AQE
Sbjct: 186 EALGVSDENEILRAYRVLQRRLNLKQKPT------EPSDHLPRFASKLGVSENVQAKAQE 239
Query: 233 AVQKSEEFDI 242
++K++E I
Sbjct: 240 IIEKAKEKGI 249
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ + +LG+ ++ +A EI +K +++ + G+ + AA LYIA E + RT KEI
Sbjct: 220 LPRFASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEI 279
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLE 197
VA R KE I + LG+E
Sbjct: 280 AEVARVTEVTIRNRYKE-ICEALGIE 304
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++ +D G+ VCS CG V++ + IDE EWR F + R G P ++ D GLS
Sbjct: 14 KLFYDPRRGEIVCSVCGYVVQQNVIDEGPEWRAF-DPDQRTKRARTGAPMTLMIHDKGLS 72
Query: 74 TVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
T I N +G + + L WQ R D R L A + M+ ++ L
Sbjct: 73 TDIDWRDRDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMMLP 132
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+ EI +V+ TKKE
Sbjct: 133 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSK-VTKKE 191
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
IGR+ ++ + LGL + + +++ RF +L ++ + K A+E +Q++
Sbjct: 192 IGRSYRFLARGLGLNLRPTSPI------EYIDRFGDSLDVSQRTKKRAKEILQEA 240
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + ++ D + G+ CS+CG V E EWR+F+ + GDN R G PT+
Sbjct: 11 CQRCNRGA-ILTDSNTGEMFCSKCGFVATDRVEQEGPEWRSFSKDEGDNR-TRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+T+I N A+G+ LS+S L W NR P DR AF +
Sbjct: 69 AIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ +L L T+ ++ IY+K D+ RGR+ L+AA LY ACR + PRT+ ++ +
Sbjct: 129 LKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVANS 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
N +K+I R ++++L L +M ++ + R SN G++ + + A E +
Sbjct: 189 IN-IKRKDIARCYRLLLRELDL------KMPVVNPVKCISRISSNAGLSEKTKRKAIEIL 241
Query: 235 QKSEEFDI 242
++ + ++
Sbjct: 242 DQAAKIEL 249
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 20/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+ C CGLV++ + +D EWR F NE D RVG P
Sbjct: 29 CPECGSE-QIINDPERGEVACGACGLVIDDNIMDMGPEWRAFDNEQRDKR-TRVGAPMTY 86
Query: 66 LLADGGLSTVIAKPN--------GASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 87 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ + PRT+ EI V
Sbjct: 147 DSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ KKE+GR ++ ++L ++++ D++ RF S L ++ + A E +
Sbjct: 207 SR-VGKKEVGRTYRFLTREL------NIKLPPTSPVDYIPRFASELNLSGEVQSKAIEII 259
>gi|448412849|ref|ZP_21576740.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445667551|gb|ELZ20192.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 322
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 21/249 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
TD C +C H +V D G+TVC +CGLV+E+ ID EWR F + S ++ RVG
Sbjct: 23 TDEACPECSGH--LVVDDERGETVCEDCGLVVETDEIDRGPEWRAF-DASEKDEKSRVGA 79
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLST I + A G LSS+ L +W R D R L A
Sbjct: 80 PTTNMMHDKGLSTNIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALG 139
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++ E
Sbjct: 140 EIDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTAAVYAAARQAGVPRSLDE 199
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ K EI R Y++++LGL E+ ++ RF S+L ++++A A
Sbjct: 200 INEVSR-VEKSEIARTYRYVIRELGL------EVAPADPESYVPRFASSLELSDEAEHRA 252
Query: 231 QEAVQKSEE 239
++ +Q ++E
Sbjct: 253 RKLLQNAKE 261
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 117/236 (49%), Gaps = 19/236 (8%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D G+TVC ECGLV+E ID EWR F D RVG PT ++ D GLST
Sbjct: 35 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKS-RVGAPTTNMMHDKGLST 93
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS L W R D R L A I M+ LGL
Sbjct: 94 NIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPE 153
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI +V+ K E+
Sbjct: 154 NVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEIDNVSR-VEKDEV 212
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
R Y+V++L L E+ ++ RF S+L + +A + A++ ++ +++
Sbjct: 213 ARTYRYVVRELKL------EVKPADPTSYVPRFASDLELTEEAERHARDLLENAKQ 262
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 29 HCPECGGR--LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 206 VSR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMAREL 258
Query: 234 VQKS 237
++ +
Sbjct: 259 LESA 262
>gi|73920958|sp|Q9UWN6.2|TF2B_SULAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
Length = 307
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTK-ANRKE 194
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R I+++L +E S D++ R + L ++ +K A E ++K++
Sbjct: 195 VARCYRLILRELDIEVPVS------DPKDYVTRIGTLLSLSGITMKHAAEIIEKAK 244
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+ E + R G PT+
Sbjct: 11 CPRCGKAT-LVTDANTGENFCGKCGFVVTEKVSESGPEWRSFSKEEHEGRS-RAGVPTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+T+I + A+G+ LS+S L W +R P DR AF +
Sbjct: 69 AMHDMGLATIIGPADRDATGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L + T+ ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K+I +
Sbjct: 129 LKDKLAVGDTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIANA 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+N +K+I R ++++LGL +M ++ + + R S G++ + + A + +
Sbjct: 189 SN-IKRKDIARCYRLLLRELGL------KMPVVNPVNCISRIASIAGLSEKTKREASKIL 241
Query: 235 QKSEEFDI 242
+ +EE I
Sbjct: 242 KNAEEVKI 249
>gi|374633244|ref|ZP_09705611.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
gi|373524728|gb|EHP69605.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
Length = 306
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D GLS
Sbjct: 16 KIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 74
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + LGL
Sbjct: 75 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLP 134
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD IY+K ++ RGR+ ++++AA +Y +CR+ RT+ EI A +KE
Sbjct: 135 KSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIAQYTK-ANRKE 193
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L +V++ D++ R S LG++ ++K A E ++K++
Sbjct: 194 VARCYRLLLREL------NVDVPVSDPKDYVTRIGSLLGLSGASMKLAAEILEKAK 243
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 25/248 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C ++V D + G+ C CG V+ D +EWR+FAN+ D R G T+
Sbjct: 12 CPSCGDR-KMVTDETTGELFCGRCGFVVTDKISDTGAEWRSFAND--DTSRARTGAGTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N ++G+ L+SS L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGAANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMGK 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L L + ++A IY+K ++K RGR+ L+AACLY ACR + PRT+ + V
Sbjct: 129 LKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNTETPRTLDD---V 185
Query: 175 ANGAT--KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
ANG +K++ R I ++L L +M + + R S ++ ++ + A E
Sbjct: 186 ANGINIRRKDVARCYRLIFRELEL------KMPVVDPVKGVSRIASIAELSEKSKRKAVE 239
Query: 233 AVQKSEEF 240
+++++E
Sbjct: 240 ILEQAKEI 247
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 19/235 (8%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
T++VF+ G+ VC+ CG ++ +D+ EWR F E + R G P +P L D GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVI-AKPNGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGL 121
STVI + A G+ LS L +WQ R + DR L +A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
IK+ A IY+K ++ RGR+ ++++AA +Y ACR +PRT+ EI +K
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLE-VNRK 194
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK 236
E+ R I K+L L+ + A D + R L + ++ A + ++K
Sbjct: 195 EVARCYRLITKELKLKVPIA------DAMDHIPRIGEALKLRGDIIEYAMKIMEK 243
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 47 CPECGGR--LVSDDGRAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS L W R ++ +R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSSRQREKMQRLRTWNERFRTRNSKERNLKQALGEIDR 163
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL T+++ ++ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 164 MASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIAAV 223
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++LGLE + ++ RF S+L + ++ + A++ +
Sbjct: 224 SR-VEKAEIARTYRYVVRELGLEVQPA------DPESYVPRFASDLDLADETERRARDLL 276
Query: 235 QKSEE 239
++E
Sbjct: 277 STAKE 281
>gi|70606656|ref|YP_255526.1| transcription initiation factor IIB [Sulfolobus acidocaldarius DSM
639]
gi|449066878|ref|YP_007433960.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449069150|ref|YP_007436231.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
gi|68567304|gb|AAY80233.1| transcription initiation factor B [Sulfolobus acidocaldarius DSM
639]
gi|449035386|gb|AGE70812.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449037658|gb|AGE73083.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
Length = 311
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 21 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 79
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 80 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 139
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 140 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTK-ANRKE 198
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R I+++L +E S D++ R + L ++ +K A E ++K++
Sbjct: 199 VARCYRLILRELDIEVPVS------DPKDYVTRIGTLLSLSGITMKHAAEIIEKAK 248
>gi|146304955|ref|YP_001192271.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145703205|gb|ABP96347.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 305
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D GLS
Sbjct: 15 KIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 73
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + LGL
Sbjct: 74 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLP 133
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD IY+K ++ RGR+ ++++AA +Y +CR+ RT+ EI A +KE
Sbjct: 134 KSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIAQYTK-ANRKE 192
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L +V++ D++ R S LG++ ++K A E ++K++
Sbjct: 193 VARCYRLLLREL------NVDVPVSDPKDYVTRIGSLLGLSGASMKLAAEILEKAK 242
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 18/239 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 11 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 64
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ LG
Sbjct: 65 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+E+C V+ +T+
Sbjct: 125 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEVCDVSK-STE 183
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
E A + + LGL + +++ RF + L ++ + A+E V ++ +
Sbjct: 184 SEHQAAYRALNRDLGLPVAPA------DPTEYLPRFATKLDLDRDTERRAREYVAEARD 236
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 18/239 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ LG
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+E+C V+ +T+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEVCDVSK-STE 182
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
E A + + LGL + +++ RF + L ++ + A+E V ++ +
Sbjct: 183 SEHQAAYRALNRDLGLPVAPA------DPTEYLPRFATKLDLDRDTERRAREYVAEARD 235
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + ++ D + G+ CS+CG V E EWR+F+ + GDN R G PT+
Sbjct: 11 CQRCNRGA-ILTDSNTGEMFCSKCGFVATDRIEQEGPEWRSFSKDEGDNR-TRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+T+I N A+G+ LS+S L W NR P DR AF +
Sbjct: 69 AIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ +L L T+ ++ IY+K D+ RGR+ L+AA LY ACR + PRT+ ++ +
Sbjct: 129 LKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVANS 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
N +K+I R ++++L L +M ++ + R SN G++ + + A E +
Sbjct: 189 IN-IKRKDIARCYRLLLRELDL------KMPVVNPVKCISRISSNAGLSEKTKRKAIEIL 241
Query: 235 QKSEEFDI 242
++ + ++
Sbjct: 242 DQAAKIEL 249
>gi|6578937|gb|AAF18139.1|AF205429_1 archaeal transcription factor B [Sulfolobus acidocaldarius]
Length = 309
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTK-ANRKE 194
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R I+++L +E S D++ R + L ++ +K A E ++K++
Sbjct: 195 VARCYRLILRELDIEVPVS------DPKDYVTRIGTLLSLSGITMKHAAEIIEKAK 244
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 22/253 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVG 60
T C C + ++V D+ +G+ CS+CG V+ + EWR+F +E GD R G
Sbjct: 5 TKELCPRCAQG-KLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEHGDR--ARAG 61
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAF 109
PT+ + D GL+T+I N ASG L++S L W +R P DR AF
Sbjct: 62 APTSLTMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAF 121
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR + PR +K
Sbjct: 122 SELNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLK 181
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
++ AN +K+I R +VK+L L +M + + R S +G+ + +
Sbjct: 182 DVEQAAN-IKRKDIARCYRLLVKELDL------KMPVTDSIQCVARIASRIGIAEKTKRY 234
Query: 230 AQEAVQKSEEFDI 242
A + ++K++E ++
Sbjct: 235 AVKVLKKAQENEV 247
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%)
Query: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ + +A ++ R+G+ K A ++ KK ++ + S G++ L AA LY++C + + +T
Sbjct: 214 SIQCVARIASRIGIAEKTKRYAVKVLKKAQENEVSAGKDPMGLAAAALYLSCVKNGEDKT 273
Query: 168 VKEICSVAN 176
++I AN
Sbjct: 274 QRDIAEAAN 282
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 21/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + VV D G+TVC++CGLV+ S+D EWR F D RVG P
Sbjct: 23 DLTCPECGGN--VVVDDEHGETVCADCGLVVTEDSVDRGPEWRAFDAAEKDQKS-RVGAP 79
Query: 63 TNPLLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G LSS+ L +W R D R L A
Sbjct: 80 TTNTMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGE 139
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ D GR+ + + +C+Y A R PR++ EI
Sbjct: 140 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEI 199
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A+
Sbjct: 200 SEVSR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFGSELGLSDESKMRAR 252
Query: 232 EAVQKSEE 239
+ ++ ++E
Sbjct: 253 QLLKNAKE 260
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 126/238 (52%), Gaps = 23/238 (9%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
EVV D+ + VC++CG V++ + D EWR F +E RVG P + D GLS
Sbjct: 42 EVVKDYERAEIVCAKCGCVIKENLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 100
Query: 74 TVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
TVI N S G+ LS++ L +WQ R D R L A + ++ +LGL
Sbjct: 101 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 160
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+++ A IY+ ++ RGR+ + ++AA +Y ACR+ PRT+ EI A+ +KE
Sbjct: 161 RHVRENAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAE-ASRVDRKE 219
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM----NNQAVKAAQEAVQK 236
IGR ++ ++LG +++ + D++ RF S LG+ ++A++ Q+A +K
Sbjct: 220 IGRTYRFLARELG------IKLTPTNPIDYVPRFASELGLPGEVESKAIQILQQAAEK 271
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 131/252 (51%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +C ++V D+ + VC +CGLV+++ ID EWR F ++ RVG
Sbjct: 37 TESQCPECGSR-QLVHDYERAELVCQQCGLVIDAEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 215 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLQLKGEVQSRA 267
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 268 VEILRQAGEREL 279
>gi|448611149|ref|ZP_21661783.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445743581|gb|ELZ95062.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 288
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 18/234 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ LG
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+++E+C+V+ +T+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVGGISRSIEEVCTVSK-STE 182
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
E A + ++LGL + +++ RF + L + + A+E V
Sbjct: 183 SEHQAAYRALNRELGLPVAPA------DPTEYLPRFATKLDLGRDVERRAREYV 230
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 22/247 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CS+C + D S G+ +C CG V++ ID+++E+R F E + R G P
Sbjct: 63 CSECGGQ-QFEEDSSKGELICISCGTVIDEDRIDKSAEYRAFNAEEKEK-KARAGQPLTY 120
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS---------LGRWQNR-GSNPDRGLILAFKTIATM 115
D G+ST I K SGE S L +W R + DR L A + +M
Sbjct: 121 TKHDMGVSTEIGK---GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSM 177
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 175
L L ++ + +Y+K DQ RGR+ +++++A +YI R++ PRT+ EI S A
Sbjct: 178 ISNLNLPESVHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLDEI-SDA 236
Query: 176 NGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
+G K+EIGRA Y+ ++LGL + D++ RF L ++ + A++ ++
Sbjct: 237 SGIEKREIGRAYRYVARELGL------RILPAKPQDYVPRFAGKLQLSGEVQARARQILK 290
Query: 236 KSEEFDI 242
++ E D+
Sbjct: 291 EARERDL 297
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 21/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 207 SR-VDKMELTRTYRYIIRELGLEVQPA------DPESYVPRFVSDLDLSDETERMARELL 259
Query: 235 Q 235
+
Sbjct: 260 E 260
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 18/239 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V +G+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGHLGV----ESGETVCNDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R NR S +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+++A +++ +++ RGR+ + AAC+Y ACR R+V+E+C VA AT+
Sbjct: 124 LPNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAK-ATE 182
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
E A + + LGL + +++ RF + L ++ + A+E V + E
Sbjct: 183 AEHHAAYRALNRDLGL------PVAPTDPTEYIPRFATKLDLDRDVERRAREYVADAHE 235
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 130/252 (51%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G
Sbjct: 7 TPKRCPECNSE-HLIRDYEHGELICADCGAVIEDAYIDQGPEWRAFDSDQ-DERRARTGS 64
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P L D GL+T I+ N G+ + + +W R + +R L LA +
Sbjct: 65 PMTYLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQ 124
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ + +LG+ IK+ A IY+K ++ RGR+ ++++ A +Y ACR+ + PRT+ E
Sbjct: 125 LLNDIGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDE 184
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I S A+ KK+IG+A ++ K+L L + ++ +FC+ L ++ QA+ +
Sbjct: 185 I-SKASEVNKKKIGKAYRHLAKELDLNLKPTTPFS------YISQFCNKLDLDKQAIVIS 237
Query: 231 QEAVQKSEEFDI 242
++ V+++ I
Sbjct: 238 EDIVRQAMSMGI 249
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 115/241 (47%), Gaps = 21/241 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D G+TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 32 VCPECGGG--LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKS-RVGAPTT 88
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 89 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 148
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI
Sbjct: 149 RMASALGLPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEIER 208
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ + E+ R Y+V++L LE + ++ RF S+L +N + + A+E
Sbjct: 209 VSR-IGRMELTRTYRYVVRELNLEVQPA------DPESYVPRFVSDLELNEEVSRRAREL 261
Query: 234 V 234
V
Sbjct: 262 V 262
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 22/250 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPT 63
C C ++V D+ +G+ CS+CG V+ + EWR+F +E GD R G PT
Sbjct: 11 LCPRCA-QGKLVTDNESGEMFCSKCGFVMSEKLQESGPEWRSFTQDEHGDR--ARAGAPT 67
Query: 64 NPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTI 112
+ + D GL+T+I N A+G+ LS+S L W NR P DR AF +
Sbjct: 68 SLTMHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSEL 127
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
+ D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR + PR +K++
Sbjct: 128 NRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVE 187
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
AN +K+I R ++K+L L +M + + R S +G+ + + A
Sbjct: 188 QAAN-IKRKDIARCYRLLIKELDL------KMPVTDSIQCVARIASRIGIAEKTKRYAVN 240
Query: 233 AVQKSEEFDI 242
+++++E ++
Sbjct: 241 VLKQAQENEV 250
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ + +A ++ R+G+ K A + K+ ++ + S G++ L AA LY++C + + +T
Sbjct: 217 SIQCVARIASRIGIAEKTKRYAVNVLKQAQENEVSAGKDPMGLAAAALYLSCVKNGEDKT 276
Query: 168 VKEICSVAN 176
++I AN
Sbjct: 277 QRDIAEAAN 285
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 19/245 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C C + V +D S G+ VC CG V+E +ID EWR+F +E D R+G P
Sbjct: 9 NAKCPSCGSES-VTYDKSTGELVCQNCGYVIEGDAIDYGREWRSFEDER-DEGKGRMGSP 66
Query: 63 TNPLLADGGLSTVIAKP-------NGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIAT 114
+ D G STVI K N F L +WQ R S +R L A +
Sbjct: 67 LSYAKYDKGTSTVIGKASESIKLSNANRRTFYK--LRKWQPRISTAYERNLKFALTELRR 124
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
S+RL + I++ A ++Y++ ++ RGR+ ++++A LY A R+ ++P T+ EI
Sbjct: 125 ASNRLHVSNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISDT 184
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+KE+G+A + ++LG +++ D++ +F S L ++N+ V A + +
Sbjct: 185 FE-VERKEVGKAYRLLCRELG------IKILPTSPSDYIYKFASELKVSNKTVSDAVKLL 237
Query: 235 QKSEE 239
+++E+
Sbjct: 238 KEAED 242
>gi|218199682|gb|EEC82109.1| hypothetical protein OsI_26126 [Oryza sativa Indica Group]
Length = 341
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 38/278 (13%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE--SHSIDETSEWRTFANESGDNDPVRVG- 60
++C C++ T +V DH+ GD +C+ C L +++ E WR A +
Sbjct: 9 SYCQHCQRTTPMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSS 68
Query: 61 ---------GPTNPLLADG-GLSTVIAKP------NGA---SGEFLSSSLGRWQNRGSNP 101
+PLL G G++ + P GA + + + R P
Sbjct: 69 SSVGGDVSPAAADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPTKVRCGVP 128
Query: 102 DRGLILA--FKTIATMSDRLGLVATIKDRANEIYKKVEDQKS-SRGRNQDALLAACLYIA 158
D LA F IA M+ RLGL + DRA E+ +K+E+ ++ +GR++DAL AACL+ A
Sbjct: 129 DTSKALAEGFDAIAGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAA 188
Query: 159 CRQEDKPRTVKEICSVAN--GATKKEIGRAKEYIVKQLGLE---TGQSVEM--------G 205
CR E PRT+KE+ + + ATK+++G+ I + LG+E Q+ +M
Sbjct: 189 CRVEGAPRTLKELIAATSDAAATKRDLGKFINAIKRHLGMEERGQDQAADMKASGGGVGV 248
Query: 206 TIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIR 243
+ AGD++ R+ S +GM+ Q AA+ A + + D+R
Sbjct: 249 VVRAGDYLHRYGSAVGMSGQEASAARRAAGRLDSLDVR 286
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 130/248 (52%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDATTGENFCGKCGFVITDKVDESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+S+ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K+I
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGHA 187
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+N +K+I R ++++L L +M + + R S G++ + +AA + +
Sbjct: 188 SN-IKRKDIARCYRLLLRELNL------KMPVVDPVKCISRIASKAGLSEKTKRAATKIL 240
Query: 235 QKSEEFDI 242
Q +EE I
Sbjct: 241 QTAEEQKI 248
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
K I+ ++ + GL K A +I + E+QK S G++ L AA LY+AC + +T
Sbjct: 216 VKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQ 275
Query: 169 KEICSVA 175
+++ A
Sbjct: 276 RDVAEAA 282
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 210
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 211 SR-VDKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 263
Query: 235 QKSEE 239
+ + +
Sbjct: 264 ESARQ 268
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 34 CPECGGR--LITDDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 210
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 211 SR-VDKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 263
Query: 235 QKSEE 239
+ + +
Sbjct: 264 ESARQ 268
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 130/252 (51%), Gaps = 27/252 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D + G+TVC +CGLV+E+ ++D EWR F N S + RVG PT
Sbjct: 34 VCPECGGS--LITDEARGETVCGDCGLVVETDAVDRGPEWRAF-NSSERDSKSRVGAPTT 90
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I N A G+ LS+ L W R ++ +R L A I
Sbjct: 91 RMMHDKGLSTNIGWQNKDAYGKALSARQREQMQRLRTWNERFRTRNSKERNLKQALGEID 150
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ D GR+ + + + LY A RQ PR++ E+ +
Sbjct: 151 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDELET 210
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K E+ R Y+V++L LE I D ++ RF S L ++++A + A
Sbjct: 211 VSR-VDKMELTRTYRYVVRELKLE---------IEPADPEQYVPRFASELDLSDEAERQA 260
Query: 231 QEAVQKSEEFDI 242
++ ++ +++ I
Sbjct: 261 RDLLRNAKKAGI 272
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 23/238 (9%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
EVV D+ + VC++CG V++ D EWR F +E RVG P + D GLS
Sbjct: 45 EVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 103
Query: 74 TVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
TVI N S G+ LS++ L +WQ R D R L A + ++ +LGL
Sbjct: 104 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 163
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+++ A IY+ D+ RGR+ + ++AA +Y ACR+ PRT+ EI A+ +KE
Sbjct: 164 RHVRENAAIIYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAE-ASRVDRKE 222
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM----NNQAVKAAQEAVQK 236
IGR ++ ++L ++++ + D++ RF S LG+ ++A++ Q+A +K
Sbjct: 223 IGRTYRFLAREL------NIKLTPTNPIDYVPRFASELGLPGEVESKAIQILQQAAEK 274
>gi|255540855|ref|XP_002511492.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223550607|gb|EEF52094.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 90
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 14/102 (13%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D++C+DC + TE+V DHSAGDT+C+ECGL RT AN+S D+ P RVG
Sbjct: 1 MADSYCTDCMRVTEIVMDHSAGDTICAECGL-------------RTSANQSSDHGPNRVG 47
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD 102
P NPLLA+GGL+TVI+K S S+SLG+W NR S+PD
Sbjct: 48 APVNPLLANGGLTTVISK-TTKSNALFSASLGKWPNRASDPD 88
>gi|448428447|ref|ZP_21584259.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448450283|ref|ZP_21592182.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448481624|ref|ZP_21604975.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448507517|ref|ZP_21615028.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448523267|ref|ZP_21618620.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|448530980|ref|ZP_21620814.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|155212686|gb|ABT17407.1| transcription initiation factor TFB [Halorubrum sp. TP009]
gi|445676412|gb|ELZ28934.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445698472|gb|ELZ50516.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445701666|gb|ELZ53642.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445707420|gb|ELZ59274.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445812135|gb|EMA62131.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445821877|gb|EMA71661.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 324
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L LE + ++ RF S+L ++ ++ A+ +
Sbjct: 207 SR-VEKAEIARTYRYVVRELKLEVKPA------DPEQYVPRFASDLELSEESEMRAKSLL 259
Query: 235 QKSEE 239
+ ++E
Sbjct: 260 RNAKE 264
>gi|448488467|ref|ZP_21607303.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445696157|gb|ELZ48250.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 324
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L LE + ++ RF S+L ++ ++ A+ +
Sbjct: 207 SR-VEKAEIARTYRYVVRELKLEVKPA------DPEQYVPRFASDLELSEESEMRAKSLL 259
Query: 235 QKSEE 239
+ ++E
Sbjct: 260 RNAKE 264
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G+TVC++CGLV+ S+D EWR F N + + RVG PT
Sbjct: 24 CPECNGN--VITDEGHGETVCADCGLVVSEDSVDRGPEWRAF-NANEKDSKSRVGAPTTN 80
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 81 TMHDKGLSTNIDWRNKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + AC+Y A R PR++ EI V
Sbjct: 141 MASALGLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYAAARMAGVPRSLDEITDV 200
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y+V++L LE + ++ RF S+LG++ + + A++ +
Sbjct: 201 SR-VDKSEVARTYRYVVRELKLEVRPA------DPESYVPRFASSLGLSEETERRARQLL 253
Query: 235 QKSEE 239
+ ++E
Sbjct: 254 KNAKE 258
>gi|448503531|ref|ZP_21613160.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445691732|gb|ELZ43915.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 324
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L LE + ++ RF S+L ++ ++ A+ +
Sbjct: 207 SR-VEKAEIARTYRYVVRELKLEVKPA------DPEQYVPRFASDLELSEESEMRAKSLL 259
Query: 235 QKSEE 239
+ ++E
Sbjct: 260 RNAKE 264
>gi|15790009|ref|NP_279833.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235732|ref|YP_001688932.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195245|sp|Q9HR45.1|TF2B4_HALSA RecName: Full=Transcription initiation factor IIB 4; Short=TFIIB 4
gi|10580433|gb|AAG19313.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726798|emb|CAP13584.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 328
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 21/232 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + ++V D G+T C ECGLV+E ID EWR F N ++ RVG P
Sbjct: 29 DHGCPEC--NGDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAF-NAQEQDEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I + A G LS L +W R ++ +R L A
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ GL ++++ A+ IY++ + GR+ + + + LY A RQ + PR++ E+
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
SV+ + EI R Y+ ++L S+E+ ++ RFCS+L ++
Sbjct: 206 ASVSR-VDRGEIARTYRYVAREL------SLEVAPTDPASYVPRFCSDLELS 250
>gi|449680698|ref|XP_002156994.2| PREDICTED: transcription initiation factor IIB-like, partial [Hydra
magnipapillata]
Length = 220
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 7/131 (5%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ T R G V T +DR+N+++K+V DQKS +GR+ DA+ +ACLYIACRQE PRT KEI
Sbjct: 25 VYTHEKREGFVRTQEDRSNQLFKQVHDQKSLKGRSNDAIASACLYIACRQEGVPRTFKEI 84
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
C+++ KKEIGR + I+K L + I + DFM RFCSNL + +AA
Sbjct: 85 CAISK-IPKKEIGRCFKLILKAL------EASVDIITSEDFMSRFCSNLSLPASVQRAAT 137
Query: 232 EAVQKSEEFDI 242
+++ E D+
Sbjct: 138 YIARRAMELDL 148
>gi|292654958|ref|YP_003534855.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448292824|ref|ZP_21483145.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543167|ref|ZP_21624807.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550042|ref|ZP_21628647.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559604|ref|ZP_21633678.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572225|ref|ZP_21640218.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448596951|ref|ZP_21654089.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371057|gb|ADE03284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445571799|gb|ELY26342.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706914|gb|ELZ58784.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710994|gb|ELZ62789.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445713090|gb|ELZ64871.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445720817|gb|ELZ72488.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740832|gb|ELZ92337.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 335
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++ EI V
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEV 216
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A++ +
Sbjct: 217 SR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARQLL 269
Query: 235 QKSEE 239
+ ++E
Sbjct: 270 KNAKE 274
>gi|448435246|ref|ZP_21586723.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445684070|gb|ELZ36456.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 324
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L LE + ++ RF S+L ++ ++ A+ +
Sbjct: 207 SR-VEKAEIARTYRYVVRELKLEVKPA------DPEQYVPRFASDLELSEESEMRAKSLL 259
Query: 235 QKSEE 239
+ ++E
Sbjct: 260 RNAKE 264
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + + LY + R PR++ E+
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YIV++L L E+ ++ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 234 VQKSEEFDI 242
++ ++E I
Sbjct: 266 LRDAKETGI 274
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + A LY + R PR++ E+
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDELEK 212
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R Y+V++L L E+ ++ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYVVRELKL------EIKPADPEQYVPRFASELGLSDEAERQARKL 265
Query: 234 VQKSEEFDI 242
++ ++E I
Sbjct: 266 LRDAKETGI 274
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 15/230 (6%)
Query: 19 HSAG-DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
H+ G +TVC +CGLV+ ++ID EWR+FA+++ +DP R G P D GLST I
Sbjct: 23 HAEGRETVCGDCGLVVSEYAIDHGPEWRSFADDA--SDPKRTGAPLTRSRHDRGLSTEIG 80
Query: 78 KPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+ G + L R NR + +R + AF I ++ L L I+D A +
Sbjct: 81 RSTRLKGRKRRQMARLRRQHNRARISTKRERNQVYAFTEIRRLASALSLPERIRDHACSL 140
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192
++ + + RGR+ + AAC+Y ACR + RTV E+ + A AT+ E A + + +
Sbjct: 141 FRSAQKEDLLRGRSLEGFAAACVYAACRAANVSRTVGEVVAEAK-ATRAEQTAAYDALNR 199
Query: 193 QLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+LGL +G + +++ RF + L ++ +A + A+E V ++ + I
Sbjct: 200 ELGL------PVGPVDPAEYVPRFATRLDLSREAERRAREYVAQAVDAGI 243
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 41 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL I++ + +Y+K + RGR+ + + AA LY ACRQ PRT+ EI V
Sbjct: 159 MASALGLPRNIRETSAVVYRKAVSKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIAEV 218
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A E +
Sbjct: 219 SR-VSRKEIGRTYRFISRELGLKLMPTSPI------DYVPRFCSGLSLKGEVQSKAVEIL 271
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 272 RQAAEKEL 279
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D + +T C +CG VLES ID EWR F + ND RVG P
Sbjct: 35 CPECSGR--IVHDEAQAETHCQDCGRVLESDQIDRGPEWRAFDSREK-NDKSRVGAPQTQ 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
L D GLSTVI + A G LSS L +W R +N +R L A I
Sbjct: 92 QLHDRGLSTVIDWRDEDAYGRSLSSLQRKKMRRLRKWDERFRTKNNRERNLKQALGEINR 151
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG I++ + +Y++ ++ RGR+ + + A LY R E+ PRT+ ++ +V
Sbjct: 152 MASALGCPDPIRETTSVLYRQALEKDMLRGRSVEGMATAALYAGSRLENAPRTLDDVAAV 211
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+ +L L EM ++ RF S LG +++ + ++E +
Sbjct: 212 SR-VDKIEIERTYRYLADELEL------EMTPTDPEAYVARFASELGCSDETERRSRELI 264
Query: 235 QKSEE 239
Q + E
Sbjct: 265 QAAVE 269
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++ EI V
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEV 216
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A++ +
Sbjct: 217 SR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARQLL 269
Query: 235 QKSEE 239
+ ++E
Sbjct: 270 KNAKE 274
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 128/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 36 TENVCPECGSR-QLVHDYERAELVCKSCGLVIDEEFIDRGPEWRAFDHDQRVKRS-RVGA 93
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 94 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 153
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A IY+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 154 ELDRMASALGLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 213
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 214 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLTLKGEVQSRA 266
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 267 VEILRQAGEREL 278
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++ EI V
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEV 216
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A++ +
Sbjct: 217 SR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARQLL 269
Query: 235 QKSEE 239
+ ++E
Sbjct: 270 KNAKE 274
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + + LY + R PR++ E+
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YIV++L L E+ ++ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 234 VQKSEEFDI 242
++ ++E I
Sbjct: 266 LRDAKETGI 274
>gi|148508035|gb|ABQ75833.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 331
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 27/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D + G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 36 CPECSGN--LVTDGARGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 92
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 93 LMHDKGLSTNIGWRNKDAYGNSLSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 152
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++ EI V
Sbjct: 153 MASALGLPENVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIERV 212
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K E+ R Y+V++L LE I D ++ RF S+L ++++A + A+
Sbjct: 213 SR-VEKMELTRTYRYVVRELKLE---------IEPADPEQYVPRFASDLDLSDEAERQAR 262
Query: 232 EAVQKSEEFDI 242
+ ++ ++E I
Sbjct: 263 QLLKNAKEAAI 273
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 118/241 (48%), Gaps = 21/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ GR+ + + + LY A R PR++ E+ V
Sbjct: 146 MASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMARV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YIV++L S+E+ ++ RF S+LG++ + + A++ +
Sbjct: 206 SR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDLGLSEETQRQARDLI 258
Query: 235 Q 235
+
Sbjct: 259 E 259
>gi|41615067|ref|NP_963565.1| hypothetical protein NEQ276 [Nanoarchaeum equitans Kin4-M]
gi|40068791|gb|AAR39126.1| NEQ276 [Nanoarchaeum equitans Kin4-M]
Length = 315
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 18/244 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++D G+ +C +CG V++ D EWR F +E+ D R G P +
Sbjct: 11 CPNCGSEN-IIYDPKTGEYICKDCGYVIKIE-FDLGPEWRHFDDETVDRR--RGGAPLSY 66
Query: 66 LLADGGLSTVI---AKPNGASGEFLSS--SLGRWQNRG--SNPDRGLILAFKTIATMSDR 118
GLST I ++ GE + +W +R S DR L +A + M D+
Sbjct: 67 AKVGRGLSTEIGDTSEIYKLKGELKQKFMRMRKWHSRVALSAIDRNLKIALHELKKMVDK 126
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
L + +++ A IY+KV ++ +RGRN + LLA LY+ R+ + PRT++E+ A G
Sbjct: 127 LNMPKYVEEEAARIYQKVVEKGLARGRNINTLLAGTLYLVIREYNIPRTLEEL-EKATGI 185
Query: 179 TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+KK+I +A IV++LG++ I DF+ R+ S L + + A E +++++
Sbjct: 186 SKKDIAKAYRLIVRELGIKP------KPISPADFVYRYASELNLPPEVTATAIEIIEEAK 239
Query: 239 EFDI 242
+ +I
Sbjct: 240 KKNI 243
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 38 TETVCPECGSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 95
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 96 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 155
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 156 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 215
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 216 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLNLKGEVQSRA 268
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 269 VEILRQAGEREL 280
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 HCPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISA 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 207 VSR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMAREL 259
Query: 234 VQKSEE 239
++ + +
Sbjct: 260 LESARQ 265
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 HCPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISA 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 207 VSR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMAREL 259
Query: 234 VQKSEE 239
++ + +
Sbjct: 260 LESARQ 265
>gi|448560614|ref|ZP_21634062.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582685|ref|ZP_21646189.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445722264|gb|ELZ73927.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445732333|gb|ELZ83916.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 288
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 18/239 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + + R NR + +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+E+C V+ AT+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSK-ATE 182
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
E A + + LGL + +++ RF + L +++ + A+E V ++ E
Sbjct: 183 AEHQAAYGALNRDLGL------PVAPADPTEYLPRFATKLDLDSDTERRAREYVAEARE 235
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 40 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 97
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 98 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 157
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL I++ + +Y+K + RGR+ + + AA LY ACRQ PRT+ EI V
Sbjct: 158 MASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIAEV 217
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A E +
Sbjct: 218 SR-VSRKEIGRTYRFISRELGLKLMPTSPI------DYVPRFCSGLSLKGEVQSRAVEIL 270
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 271 RQAAEKEL 278
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 27/252 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D + G+TVC +CGLV+E ++D EWR F + D+ RVG PT
Sbjct: 44 VCPECGGS--LVSDEARGETVCGDCGLVVEEDAVDHGPEWRAFDSSERDSKS-RVGAPTT 100
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I N A G LS+ L W R ++ +R L A I
Sbjct: 101 RMMHDKGLSTNIGWQNKDAYGNSLSARQREQMQRLRTWNERFRTRNSKERNLKQALGEID 160
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ GR+ + + A LY A RQ PR++ E+ +
Sbjct: 161 RMASALGLPENVRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQAGTPRSLDELET 220
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K E+ R YIV++L LE I D ++ RF S LG++++A + A
Sbjct: 221 VSR-VDKMELTRTYRYIVRELKLE---------IEPADPEQYVPRFASELGISDEAERQA 270
Query: 231 QEAVQKSEEFDI 242
++ ++E I
Sbjct: 271 HTLLRGAKEVGI 282
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 41 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL I++ + +Y+K + RGR+ + + AA LY ACRQ PRT+ EI V
Sbjct: 159 MASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDEIAEV 218
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A E +
Sbjct: 219 SR-VSRKEIGRTYRFISRELGLKLMPTSPI------DYVPRFCSGLNLKGEVQSRAVEIL 271
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 272 RQAAEKEL 279
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G++VC +CGLV+E + ID EWR F N + ++ RVG PT
Sbjct: 32 CPECGG--QVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++ E+ +V
Sbjct: 149 MASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVANV 208
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E R YIV++L LE + ++ RF S+L + ++ + ++E +
Sbjct: 209 SR-IDEMEFKRTYRYIVRELSLEVAPA------DPAQYVPRFASDLDLPDEVERRSRELI 261
Query: 235 QKSE 238
++
Sbjct: 262 SNAQ 265
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D +TVC +CGLV+E ID EWR F D RVG PT
Sbjct: 28 CPECGGR--VLSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDKKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++ EI +V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQASTPRSLDEISAV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 205 SR-VEKMELTRTYRYIIRELGLEVKPA------DPEQYVPRFVSDLDLSDETERMARELL 257
Query: 235 QKSEE 239
+ + +
Sbjct: 258 ESARQ 262
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 HCPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +
Sbjct: 147 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISA 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 207 VSR-VEKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMAREL 259
Query: 234 VQKSEE 239
++ + +
Sbjct: 260 LESARQ 265
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 131/249 (52%), Gaps = 22/249 (8%)
Query: 6 CSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H+E ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G P
Sbjct: 17 CPEC--HSEHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAFDSDQ-DERRARTGSPMT 73
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
L D GL+T I+ N G+ + + +W R + +R L LA + +
Sbjct: 74 YLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLN 133
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+ +LG+ IK+ + IY+K ++ RGR+ ++++ A +Y ACR+ + PRT+ EI
Sbjct: 134 DIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIAK 193
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
A+ KK+IG+A ++ K+L L + ++ +FC+ L ++ QA+ +++
Sbjct: 194 -ASEVNKKKIGKAYRHLAKELDLNLRPTTPFS------YIAQFCNKLDLDKQAIVISEDI 246
Query: 234 VQKSEEFDI 242
V+++ I
Sbjct: 247 VRQAMSMGI 255
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++ EI V
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEV 216
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A++ +
Sbjct: 217 SR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARKLL 269
Query: 235 QKSEE 239
+ ++E
Sbjct: 270 KNAKE 274
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 21/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 210
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 211 SR-VDKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 263
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+ V+D G+ +C+ CG V++ + ID EWR F + S R G P + LL D GLS
Sbjct: 14 KFVYDPERGEIICANCGFVIQENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLS 72
Query: 74 TVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDR 128
T I G L +WQ+R D R L A + + RL L +++
Sbjct: 73 TDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEE 132
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188
A +Y+ + RGR+ ++++AAC+Y ACR PRT+ EI +A KKEIGR+
Sbjct: 133 AARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADMAK-VDKKEIGRSFR 191
Query: 189 YIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK 236
+I + L L + + D++ +F LG++ + + A E + +
Sbjct: 192 FIARNLNLTPKKLF----VKPTDYVNKFADELGLSERTRRRAIELLDQ 235
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL + RA E
Sbjct: 178 MAKVDKKEIGRSFRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSERTRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
+ +V + + G++ L+AA LYIA E + RT +E+ A R KE +V
Sbjct: 232 LLDQVYNMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEAARVTEVTVRNRYKE-MV 290
Query: 192 KQLGLE 197
++LGL+
Sbjct: 291 EKLGLK 296
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L++S L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K+I
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+N +K+I R ++++L L +M + + R S G++ + + A + +
Sbjct: 188 SN-IKRKDIARCYRLLLRELNL------KMPVVDPIKCISRIASKAGLSEKTKRKATKIL 240
Query: 235 QKSEEFDI 242
Q +EE I
Sbjct: 241 QTAEENKI 248
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
K I+ ++ + GL K +A +I + E+ K S G++ L AA LY+AC + +T
Sbjct: 216 IKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQ 275
Query: 169 KEICSVA 175
+++ A
Sbjct: 276 RDVAEAA 282
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 29 HCPECGGR--LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 205
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ K E+ R Y++++LGLE + ++ RF S+L ++++ + A+E
Sbjct: 206 VSR-VDKMELTRTYRYVIRELGLEVQPA------DPESYVPRFVSDLDLSDETERMARE 257
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++ EI V
Sbjct: 157 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEV 216
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A++ +
Sbjct: 217 SR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARKLL 269
Query: 235 QKSEE 239
+ ++E
Sbjct: 270 KNAKE 274
>gi|324511266|gb|ADY44696.1| Transcription initiation factor IIB [Ascaris suum]
Length = 211
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 88/143 (61%), Gaps = 7/143 (4%)
Query: 100 NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159
N DR + A I MS R+ L +I+D A ++++ V D K+ +G+N +A AACLYIAC
Sbjct: 3 NTDRQMSQAMSVIREMSARIHLSKSIEDNAAKVFRDVLDSKALKGKNNEAQAAACLYIAC 62
Query: 160 RQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSN 219
R+E PRT KEIC+ A+ +KKEIGR + I+K LET + I + DFM RFC N
Sbjct: 63 RKEGVPRTFKEICA-ASRVSKKEIGRCFKLIIK--SLETN----LEQITSADFMSRFCGN 115
Query: 220 LGMNNQAVKAAQEAVQKSEEFDI 242
LG+++ AA +K+ E D+
Sbjct: 116 LGLSHSIQAAATRIAKKAVELDL 138
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E +H G+TVCS CGLV+E + ID EWR F + D RVG PT
Sbjct: 31 CPECGGRLETDTEH--GETVCSACGLVVEENEIDRGPEWRAFDSAERDQKS-RVGAPTTT 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N A G LS+ L W R ++ +R L A I
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNTLSNRQRQKMQRLRTWNERFRTRNSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI V
Sbjct: 148 MASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIVQV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E+ R Y++++L LE + ++ RF S+L ++++A A+E +
Sbjct: 208 SR-IDRMELTRTYRYVIRELDLEVQPA------DPESYVPRFASDLELSDEAEHRARELL 260
Query: 235 QKSEEFDI 242
+++ I
Sbjct: 261 SNAKQSGI 268
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + S ++ RVG PT
Sbjct: 31 CPECGGR--LVSDTEHAETVCDDCGLVVDEGEIDRGPEWRAF-DASEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 148 MASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIAAV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGL E+ ++ RF S+L ++++ + A+ +
Sbjct: 208 SR-VEKDEIARTYRYVIRELGL------EVQPADPESYVPRFASDLDLSDETERRARSLL 260
Query: 235 QKSEEFDI 242
++E I
Sbjct: 261 SSAKEQGI 268
>gi|428169704|gb|EKX38635.1| hypothetical protein GUITHDRAFT_115183 [Guillardia theta CCMP2712]
Length = 449
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 21/233 (9%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA---- 77
G VCS C + + + SEWRTF ++ + R GGP N LL + G T I
Sbjct: 146 GSIVCSNCAMENNARIMSTQSEWRTFQDDDKSQEKGRTGGPENALLNNDGAQTKIEGNDF 205
Query: 78 ---KPNGASGEFLSSSLGRWQNR-GSNP-DRGLILAFKTIATMSDRLGLVATIKDRANEI 132
KP +++L + Q+R GS DR L A+K I + D + L + I+ +A
Sbjct: 206 LTRKPVTVDVLGSAANLAKSQHRFGSQSGDRALTDAYKKIDEICDTMNLSSVIRGQAKHN 265
Query: 133 YKKV--EDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
+K E +K + D +L +C+YIACR+E PRT+KE+C+ A TKKEIG A ++
Sbjct: 266 FKSYDEESKKQKKKIPIDPVLTSCIYIACREEGFPRTMKEMCA-ATTLTKKEIGNAFKH- 323
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAV-KAAQEAVQKSEEFDI 242
+L +T Q ++ A D + RFCSNL ++ + +AA+ Q ++ +I
Sbjct: 324 --ELIKKTVQPMK-----ASDIIPRFCSNLNLDGNVIEEAAKHICQAADALNI 369
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 127/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+ C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 37 VQSVCPECGSR-QLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 215 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLNLKGEVQSRA 267
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 268 VEILRQAGEREL 279
>gi|448304757|ref|ZP_21494693.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590138|gb|ELY44359.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 356
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 125/277 (45%), Gaps = 49/277 (17%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF----ANESG------ 52
D C +C + +V D G+TVC +CGLV+E S+D EWR F NE
Sbjct: 28 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKSRVGAPT 85
Query: 53 -------------------DNDPVRVGGPTNPLLADGGLSTVIAKPN-GASGEFLSSS-- 90
N+ RVG PT + D GLST I N A G L S
Sbjct: 86 TNTMHDXRGPEWRAFDAAEKNEKSRVGAPTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQR 145
Query: 91 -----LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSS 142
L +W R D R L A I M+ LGL +++ A+ IY++ D+
Sbjct: 146 EKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPTNVRETASVIYRRALDEDLL 205
Query: 143 RGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSV 202
GR+ + + AC+Y A RQ PR++ EI V+ K EI R Y+V++LGLE +
Sbjct: 206 PGRSIEGVSTACVYAAARQAGVPRSLDEIADVSR-VEKNEIARTYRYVVRELGLEVQPA- 263
Query: 203 EMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S L ++++A A+ +Q ++E
Sbjct: 264 -----DPESYVPRFASGLDLSDEAEHRARGLLQNAKE 295
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 133/249 (53%), Gaps = 23/249 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDET-SEWRTFANESGDNDPVRVGGPTN 64
C C + T +V D + + C +CG V+ + +DE+ EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDATTAENFCGKCGFVI-TEKVDESGPEWRSFSNE-GENKS-RAGVPTS 66
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+TVI N A+G+ L+S+ L W +R P DR AF +
Sbjct: 67 LAMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD 126
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+ D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K+I
Sbjct: 127 RLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQ 186
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
+N +K+I R ++++L L +M + + R S G++ + +AA +
Sbjct: 187 ASN-IKRKDIARCYRLLLRELNL------KMPVVDPVKCISRIASKAGLSEKTKRAATKI 239
Query: 234 VQKSEEFDI 242
+Q +EE I
Sbjct: 240 LQTAEEQKI 248
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
K I+ ++ + GL K A +I + E+QK S G++ L AA LY+AC + +T
Sbjct: 216 VKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGESKTQ 275
Query: 169 KEICSVA 175
+++ A
Sbjct: 276 RDVAEAA 282
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 127/248 (51%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CG+V+E SID+ EWR F ++ D R G P +
Sbjct: 9 CPECGS-GHLIRDYERGEVLCGDCGIVIEETSIDQGPEWRAFDSDQ-DEKRARTGSPMSF 66
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N G+ + + +W R + +R L LA + +
Sbjct: 67 LSHDKGLATEISWSNRDYYGKRIPHKNRAQIYRVRKWHQRIRVSNASERNLSLALQLLND 126
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+LG+ IK+ A IY+K ++ RGR+ ++++ A +Y ACRQ + PRT+ EI
Sbjct: 127 DGSKLGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISKA 186
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A+ KK+IG+A ++ K+L L + ++ +FC+ L ++ + ++E +
Sbjct: 187 AD-INKKKIGKAYRHLAKELKLNLKPTTPYS------YVSQFCNKLNLDKDVIIKSEEII 239
Query: 235 QKSEEFDI 242
++ E I
Sbjct: 240 RRVNETGI 247
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 130/248 (52%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+++ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L + ++ ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K+I
Sbjct: 128 LKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+N +K+I R ++++L L +M + + R S G++ + + A + +
Sbjct: 188 SN-IKRKDIARCYRLLLRELNL------KMPVVDPVKCISRIASKAGLSEKTKRKATKIL 240
Query: 235 QKSEEFDI 242
Q +EE I
Sbjct: 241 QTAEEQKI 248
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
K I+ ++ + GL K +A +I + E+QK S G++ L AA LY+AC + +T
Sbjct: 216 VKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQ 275
Query: 169 KEICSVA 175
+++ A
Sbjct: 276 RDVAEAA 282
>gi|448728406|ref|ZP_21710734.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
gi|445796888|gb|EMA47373.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
Length = 335
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 21/249 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+TVCS+CGLV++ + ID EWR F+++ D R G
Sbjct: 29 TERVCPECDGR--LVDDDEHGETVCSDCGLVVDENEIDHGPEWRAFSSQERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT L+ D GLS+ I N A+G LS+ L W R D R L A
Sbjct: 86 PTTKLMHDKGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 145
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M LG+ +++ A+ IY++ + GR+ + + A LY RQ PR+V++
Sbjct: 146 EIERMGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAGIRQMGLPRSVED 205
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ +V+ + E RA YI ++LGL E+G ++ RF S+L ++++ + A
Sbjct: 206 VAAVSR-VDEMEFKRAYRYINQELGL------EIGPPDPQQYVSRFASDLDVSDETERRA 258
Query: 231 QEAVQKSEE 239
++ ++ ++E
Sbjct: 259 RDLLRTAQE 267
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC +CGLV+ + S+D EWR F D + RVG PT
Sbjct: 39 CPECGGH--VVTDDEHGETVCDDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 96 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 155
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + +C Y A R PR++ EI V
Sbjct: 156 MASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAEV 215
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI ++L S+E+ ++ RF S LG+++++ A++ +
Sbjct: 216 SR-VEKSEVARTYRYIAREL------SLEVKPADPEQYVPRFASELGLSDESKMRARKLL 268
Query: 235 QKSEE 239
+ ++E
Sbjct: 269 KNAKE 273
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 36 TETVCPECGGR-QLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 93
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 94 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 153
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 154 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 213
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 214 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLTLKGEVQSRA 266
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 267 VEILRQAGEREL 278
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 34 CPECGGR--LIADDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 210
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 211 SR-VDKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 263
Query: 235 QKSEE 239
+ + +
Sbjct: 264 ESARQ 268
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 118/244 (48%), Gaps = 27/244 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ ++ IY++ GR+ + + + LY A R PR++ E+ V
Sbjct: 146 MASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMARV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K E+ R YIV++L LE + D ++ RF S+LG++ + + A+
Sbjct: 206 SR-VEKMELTRTYRYIVRELSLE---------VQPADPEHYLPRFISDLGLSEETQRQAR 255
Query: 232 EAVQ 235
+ V+
Sbjct: 256 DLVE 259
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 21/237 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
E+V D S + VC++CG V++ D EWR F +E RVG P + D GLS
Sbjct: 33 EIVSDSS--EIVCAKCGCVIKEQIFDAGPEWRAFDHEQKVKR-CRVGAPMTYTIHDKGLS 89
Query: 74 TVIAKPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
TVI N A G+ +S++ L +WQ R D R L A + ++ +LGL
Sbjct: 90 TVIDWRNKDAYGKDISANKRAELYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLP 149
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+K+ A+ +Y++ + RGR+ + ++AA +Y ACR+ PRT+ EI V+ KKE
Sbjct: 150 KHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAACRKYRVPRTLDEIAEVSR-VDKKE 208
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
IGR ++ ++L +++ + D++ RF S LG+ + A + ++K+ E
Sbjct: 209 IGRTYRFLAREL------KIKLAPTNPIDYVPRFASELGLPGEVESKAIQILKKAAE 259
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TETVCPECGGR-QLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 212 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLTLKGEVQSRA 264
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 265 VEILRQAGEREL 276
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 19/240 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++++D G+ +C G V+E ID+ EWR F E + R+GGP + D GL+
Sbjct: 23 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 81
Query: 74 TVIAKPNG-ASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T I N A+G+ L L RWQ R S+ +R L A + +SD+L L
Sbjct: 82 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 141
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+K+ A IY++ ++ RGR+ ++++AA +Y ACR+ PRT+ EI S +++K+
Sbjct: 142 RNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKVPRTLDEI-SKHTKSSRKD 200
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
I R ++K+L +++ T DF+ R L + +K A E + K+ +
Sbjct: 201 IARCYRLLLKEL------DIKVQTSDPIDFIPRIAHALNLGGGVMKKAAEILHKARSIGV 254
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 15/203 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++ D + G+ C CG V+ D +EWR+FAN+ D + RVG T+
Sbjct: 12 CPSCGDK-KMITDETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N ++G+ L+SS L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDK 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L L + ++A IY+K ++K RGR+ L+AACLY +CR + PRT+ ++
Sbjct: 129 LKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKG 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLE 197
N +K++ R I ++L L+
Sbjct: 189 IN-IRRKDVARCYRLIFRELELK 210
>gi|336477091|ref|YP_004616232.1| transcription factor TFIIB cyclin [Methanosalsum zhilinae DSM 4017]
gi|335930472|gb|AEH61013.1| Transcription factor TFIIB cyclin-related protein [Methanosalsum
zhilinae DSM 4017]
Length = 337
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 20/251 (7%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + D+ + VC++CGLV+++ +DE EWR F ++ RVG P
Sbjct: 38 EVMCPECGSRN-LEHDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAP 95
Query: 63 TNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKT 111
+ D GLST+I N S G+ +SS L +WQ R + +R L A
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ ++KEIGR +I ++L L+ + + D++ RFCS L + + +
Sbjct: 216 GEVSR-VSRKEIGRTYRFISRELSLKLMPTSPI------DYVPRFCSGLQLKGEVQSKSV 268
Query: 232 EAVQKSEEFDI 242
E ++++ E ++
Sbjct: 269 EILRQASEKEL 279
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 19/240 (7%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++++D G+ +C G V+E ID+ EWR F E + R+GGP + D GL+
Sbjct: 19 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 77
Query: 74 TVIAKPNG-ASGEFLSS-------SLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T I N A+G+ L L RWQ R S+ +R L A + +SD+L L
Sbjct: 78 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+K+ A IY++ ++ RGR+ ++++AA +Y ACR+ PRT+ EI +++K+
Sbjct: 138 RNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKIPRTLDEIAK-HTKSSRKD 196
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
I R ++K+L +++ T DF+ R L ++ +K A E + ++ +
Sbjct: 197 IARCYRLLLKEL------DIKVQTSDPIDFIPRIAHALNLSGSVMKKAAEILHRARSLGV 250
>gi|402594223|gb|EJW88149.1| transcription initiation factor IIB [Wuchereria bancrofti]
Length = 210
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 86/143 (60%), Gaps = 7/143 (4%)
Query: 100 NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159
N DR + I MS R+ L +I+D A +I+K V D K+ RG+N +A AACLYIAC
Sbjct: 3 NMDRQMSQGLSVIREMSARIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIAC 62
Query: 160 RQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSN 219
R+E PRT KEIC+ A+ +KKEIGR + I+K LET + I + DFM RFC N
Sbjct: 63 RKEGVPRTFKEICA-ASRVSKKEIGRCFKLIIK--SLETS----LEQITSADFMSRFCGN 115
Query: 220 LGMNNQAVKAAQEAVQKSEEFDI 242
LG+ + AA +K+ E D+
Sbjct: 116 LGLPHSIQAAATRIAKKAVELDL 138
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+T+C +CGLV+E ++D EWR F + N+ RVG PT
Sbjct: 25 CPECS--GKLIADSGHGETICEDCGLVVEVDNVDRGPEWRAF-DAKEKNEKSRVGAPTTN 81
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + +C+Y A RQ PR++ EI V
Sbjct: 142 MASALGLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEITEV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y+V++L S+E+ ++ RF S L ++++A A+E +
Sbjct: 202 SR-VDKSEVARTYRYVVREL------SLEVKPADPESYVPRFASGLELSDEAEHRARELL 254
Query: 235 QKSEE 239
+ ++E
Sbjct: 255 RNAKE 259
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 127/245 (51%), Gaps = 22/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K+ +V D + + CS CG+V+E + D E R FAN + D G T+
Sbjct: 18 CPRCGKNA-LVTDVESSEIFCSNCGIVVEEKTNDRRPE-RAFANSTTDKS--HTGDKTSL 73
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRG---SNPDRGLILAFKTIAT 114
D GLSTVI P AS + + L +W NR +N DR L A ++
Sbjct: 74 TRHDRGLSTVINPFDKDSAGSPLSASMKSSMTRLRKWDNRSRIKTNDDRNLQQALLELSK 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M ++L L I ++A+ IY+K ++K +GR+ +L+AACLY ACR+ + PRT++E+ +
Sbjct: 134 MKEKLSLSDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRESEAPRTLREV-AA 192
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ G +KEI I K+L L +M I + + + SN ++ + + A + +
Sbjct: 193 SIGIKRKEISATYRLIFKELDL------KMPVIDSVSCIAKIASNAELSEKTKRYAIKIL 246
Query: 235 QKSEE 239
+K+E+
Sbjct: 247 KKAEK 251
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 15/203 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++ D + G+ C CG V+ D +EWR+FAN+ D + RVG T+
Sbjct: 12 CPSCGDK-KMITDETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N ++G+ L+SS L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDK 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L L + ++A IY+K ++K RGR+ L+AACLY +CR + PRT+ ++
Sbjct: 129 LKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKG 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLE 197
N +K++ R I ++L L+
Sbjct: 189 IN-IRRKDVARCYRLIFRELELK 210
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 128/248 (51%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDPNTGENFCGACGFVITEKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L++S L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K+I
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+N +K+I R ++++L L +M + + R S G++ + + A + +
Sbjct: 188 SN-IKRKDIARCYRLLLRELNL------KMPVVDPIKCISRIASKAGLSEKTKRKATKIL 240
Query: 235 QKSEEFDI 242
Q +EE I
Sbjct: 241 QTAEENKI 248
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
K I+ ++ + GL K +A +I + E+ K S G++ L AA LY+AC + +T
Sbjct: 216 IKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQ 275
Query: 169 KEICSVA 175
+++ A
Sbjct: 276 RDVAEAA 282
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LISDTEHAETVCQDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 207 SR-VDKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 259
Query: 235 QKSEE 239
+ E
Sbjct: 260 DSARE 264
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H+ +TVC +CGLV++ ID EWR F + S ++ RVG PT
Sbjct: 30 CPECGGRLRSDSEHA--ETVCQDCGLVVDEGEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIAAV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGL E+ ++ RF S L ++++ + A++ +
Sbjct: 207 SR-VEKDEIARTYRYVIRELGL------EVQPADPESYVPRFASELELSDETERRARQLL 259
Query: 235 QKSEE 239
Q ++E
Sbjct: 260 QTAKE 264
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 118/241 (48%), Gaps = 21/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ ++ IY++ GR+ + + + LY A R PR++ E+ V
Sbjct: 146 MASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMARV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YIV++L S+E+ ++ RF S+LG++ + + A++ +
Sbjct: 206 SR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDLGLSEETQRQARDLI 258
Query: 235 Q 235
+
Sbjct: 259 E 259
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+TVC +CGLV+E ID EWR F + D RVG PT
Sbjct: 26 CPECGGR--LAADSEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D GR+ + + A +Y A RQ PR++ E+ V
Sbjct: 143 MASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTASVYAAARQAGVPRSLDEVAGV 202
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++LGLE + ++ RF S+L ++ +A A++ +
Sbjct: 203 SR-VEKSEIARTYRYVVRELGLEVAPA------DPESYVPRFASDLDLSEEAENRARKLL 255
Query: 235 QKSEE 239
++E
Sbjct: 256 GNAKE 260
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 21/241 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C V+ D G+T+C +CGLVL++ +D +WR + ++ D + R+G PT
Sbjct: 1 MCPECDGL--VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTT 57
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
L+ D GLST+I + A G +S L +W R D R L AF I
Sbjct: 58 QLMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAHERNLKQAFGEIR 117
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL I++ A +Y++ + GR+ + + A LY A RQ PRT+ E+ +
Sbjct: 118 RMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELET 177
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ + I RA Y+ ++LGL M + ++ +F S L ++++A + A++
Sbjct: 178 VSR-VKRLRIQRAYRYLSRELGL------RMEPVDPLQYVPQFASELNVSDEATRRARDL 230
Query: 234 V 234
+
Sbjct: 231 L 231
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 23/249 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +C ++ D +TVC +CGLV+E ID EWR F ++G+ D RVG PT
Sbjct: 31 CPECGGR--LISDTEHAETVCDDCGLVVEEGEIDRGPEWRAF--DAGEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL ++++ A+ IY++ ++ GR+ + + A LY + RQ PR++ EI +
Sbjct: 147 RMASALGLPESVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSLDEISA 206
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R Y+V++LGL E+ ++ RF S+L ++++ + A+
Sbjct: 207 VSR-VEKDEVARTYRYVVRELGL------EVKPADPEQYVPRFASDLDLSDETERRARSL 259
Query: 234 VQKSEEFDI 242
+ ++E I
Sbjct: 260 LSTAKEKGI 268
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 127/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+ C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 37 VQSVCPECGSR-QLVHDYERAELVCQSCGLVLDEEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 215 VAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLNLKGEVQSRA 267
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 268 VEILRQAGEREL 279
>gi|358060583|dbj|GAA93702.1| hypothetical protein E5Q_00347 [Mixia osmundae IAM 14324]
Length = 362
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 137/253 (54%), Gaps = 23/253 (9%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C C+ T + ++S+GD VC CGLVL +DE SEWRTFA + +DP RVGGP+
Sbjct: 32 ICPSCQDPTPNLAEEYSSGDLVCRSCGLVLSDRIVDERSEWRTFAGDEKGDDPSRVGGPS 91
Query: 64 NPLLADGG----LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
PL GG ST+I+ +G SG + + ++ ++ L+ ++K I+ + +++
Sbjct: 92 -PLAGLGGSADQFSTIISDRDGNSGLAKELQKAALRTQRASGEKNLVGSYKEISAVCEKI 150
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
L + D A ++YK+ +D+K +G++ DA++AAC++IACRQ RT KEI ++
Sbjct: 151 NLPTMVSDIAKQLYKRQDDEKLLKGKSNDAIIAACIFIACRQAGVSRTFKEIVELSR-VP 209
Query: 180 KKEIGRAKEYI--------VKQLGL--------ETGQSVEMGTIHAGDFMRRFCSNLGMN 223
KK +G+ + + V G+ +T V +G D + RFC++LGM+
Sbjct: 210 KKVLGQCFKILKSVFDTNDVGTGGITADGTVVTDTTHRVNLGGNGPEDTIVRFCNHLGMS 269
Query: 224 NQAVKAAQEAVQK 236
+E V+K
Sbjct: 270 AYIQSRGREVVRK 282
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 82 ASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
A G ++ + R G+ P+ TI + LG+ A I+ R E+ +KV +
Sbjct: 236 ADGTVVTDTTHRVNLGGNGPE-------DTIVRFCNHLGMSAYIQSRGREVVRKVMNLGV 288
Query: 142 SRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 194
GR+ + +C+Y+ +PR+ ++I VA G T I A I L
Sbjct: 289 LDGRSPVTVAGSCIYLTAHLFGEPRSARDIGEVA-GVTDGTIRMAYRLIHPHL 340
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D+ + C CGLVLE ID EWR F ++ RVG P
Sbjct: 39 CPECGSR-QLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRS-RVGAPMTF 96
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G +SS L +WQ R + +R L A +
Sbjct: 97 TIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ EI V
Sbjct: 157 MASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIAEV 216
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A E +
Sbjct: 217 SR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLNLKGEVQSRAVEIL 269
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 270 RQAGEREL 277
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 151 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 210
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 211 SR-VDKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 263
Query: 235 QKSEE 239
+ + +
Sbjct: 264 ESARQ 268
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 21/241 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C V+ D G+T+C +CGLVL++ +D +WR + ++ D + R+G PT
Sbjct: 48 VCPECDG--LVIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTT 104
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
L+ D GLST+I + A G +S L +W R D R L AF I
Sbjct: 105 QLMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAHERNLKQAFGEIR 164
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL I++ A +Y++ + GR+ + + A LY A RQ PRT+ E+ +
Sbjct: 165 RMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELET 224
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ + I RA Y+ ++LGL M + ++ +F S L ++++A + A++
Sbjct: 225 VSR-VKRLRIQRAYRYLSRELGL------RMEPVDPLQYVPQFASELNVSDEATRRARDL 277
Query: 234 V 234
+
Sbjct: 278 L 278
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 121/248 (48%), Gaps = 28/248 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D G+ VC +CG+VLES +ID EWR F D + RVG PT
Sbjct: 31 CPECGGT--VTTDDGHGERVCEQCGVVLESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
LL D GLST I ASG LS S L W R + DR L A I
Sbjct: 88 LLHDEGLSTSIGWSDKDASGRTLSPSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ E +
Sbjct: 148 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEFEPI 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHA--GDFMRRFCSNLGMNNQAVKAAQE 232
+ +++ RA Y+ +QL E+G A +++ RF S L +++ + A+E
Sbjct: 208 SR-VRRQKYARAYRYLARQL--------ELGIAPADPAEYLPRFVSELELSDDLERKARE 258
Query: 233 ---AVQKS 237
AV+K+
Sbjct: 259 LLSAVKKT 266
>gi|448732733|ref|ZP_21715002.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445804263|gb|EMA54522.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 340
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 122/245 (49%), Gaps = 21/245 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+T C+ECGLV++ ID EWR F + D R G
Sbjct: 29 TERVCPECGGR--LVNDTEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
PT L+ D GLS+ I + A G LSS L W R ++ +R L A
Sbjct: 86 PTTKLMHDKGLSSQIGWQDKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALA 145
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M LG+ +++ A+ IY++ + GR+ + + A LY A RQ PR+V+E
Sbjct: 146 EIERMGSALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAAIRQMGLPRSVEE 205
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ +V+ + E RA YI ++L S+E+G ++ RF S+LG++++ A
Sbjct: 206 VSAVSR-VDEMEFKRAYRYINQEL------SLEIGPPAPDQYLPRFASDLGVSDETEGRA 258
Query: 231 QEAVQ 235
+E +Q
Sbjct: 259 RELIQ 263
>gi|300711996|ref|YP_003737810.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|448295686|ref|ZP_21485750.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299125679|gb|ADJ16018.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445583785|gb|ELY38114.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
Length = 320
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+TVC++CGLV+ S+D EWR F + D RVG PT
Sbjct: 25 CPECS--GQLISDDEHGETVCADCGLVVAEDSVDRGPEWRAFDSREKDQKS-RVGAPTTN 81
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G L S L +W R D R L A I
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 141
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A +Y A RQ PR++ EI V
Sbjct: 142 MASALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATASVYAAARQAGVPRSLDEISEV 201
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y+V++LGL E+ ++ RF S L ++++A A++ +
Sbjct: 202 SR-VEKSEVARTYRYVVRELGL------EVQPADPESYVPRFASGLELSDEAEHRARQLL 254
Query: 235 QKSEE 239
+ ++E
Sbjct: 255 RNAKE 259
>gi|298674300|ref|YP_003726050.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298287288|gb|ADI73254.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 19/236 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VCS+CGLV+++ +DE EWR F ++ RVG P + D GLST+I
Sbjct: 56 DYERAELVCSDCGLVVDAELVDEGPEWRAFDHDQRMKRS-RVGAPMTYTIHDKGLSTMID 114
Query: 78 KPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N S G+ +SS L +WQ R + +R L A + M+ LGL T++
Sbjct: 115 WRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVR 174
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI V+ ++KEIGR
Sbjct: 175 ETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKEIGRT 233
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+I ++L S+++ D++ RFCS L + + E ++++ E ++
Sbjct: 234 YRFISREL------SLKLMPTSPIDYVPRFCSGLKLKGEVQSKGVEILRQASEKEL 283
>gi|448543870|ref|ZP_21625331.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448551030|ref|ZP_21629172.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448558595|ref|ZP_21633152.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445706012|gb|ELZ57899.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710586|gb|ELZ62384.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445712347|gb|ELZ64129.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 288
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 18/239 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + + R NR + +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+E+C V+ AT+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSK-ATE 182
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
E A + + LGL + +++ RF + L +++ + A+E V ++ +
Sbjct: 183 AEHQAAYGALNRDLGL------PVAPADPTEYLPRFATKLDLDSDTERRAREYVAEARD 235
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC ECGLV+E +D EWR F + S + RVG PT
Sbjct: 35 VCPECGGN--LVQDDEHGETVCQECGLVVEDTVVDRGPEWRAF-DASERDSKSRVGAPTT 91
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 151
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + A LY A R D PR++ E+
Sbjct: 152 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELEK 211
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YIV++L L E+ ++ RF S L ++++A + A++
Sbjct: 212 VSR-VDKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELDLSDEAERQARQL 264
Query: 234 VQKSEEFDI 242
++ ++E I
Sbjct: 265 LRDAKETGI 273
>gi|34394694|dbj|BAC84000.1| putative Transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|222637101|gb|EEE67233.1| hypothetical protein OsJ_24371 [Oryza sativa Japonica Group]
Length = 362
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 135/278 (48%), Gaps = 38/278 (13%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE--SHSIDETSEWRTFANESGDNDPVRVG- 60
++C C++ T +V DH+ GD +C+ C L +++ E WR A +
Sbjct: 9 SYCQHCQRTTPMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSS 68
Query: 61 ---------GPTNPLLADG-GLSTVIAKP------NGA---SGEFLSSSLGRWQNRGSNP 101
+PLL G G++ + P GA + + + R P
Sbjct: 69 SSVGGDVSPAAADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPPKVRCGVP 128
Query: 102 DRGLILA--FKTIATMSDRLGLVATIKDRANEIYKKVEDQKS-SRGRNQDALLAACLYIA 158
D LA F I M+ RLGL + DRA E+ +K+E+ ++ +GR++DAL AACL+ A
Sbjct: 129 DTSKALAEGFDAIVGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAA 188
Query: 159 CRQEDKPRTVKEICSVAN--GATKKEIGRAKEYIVKQLGLE---TGQSVEM--------G 205
CR E PRT+KE+ + + ATK+++G+ I + LG+E Q+ +M
Sbjct: 189 CRVEGAPRTLKELIAATSDAAATKRDLGKFINAIKRHLGMEERGQDQAADMKASGGGVGV 248
Query: 206 TIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIR 243
+ AGD++ R+ S +GM+ Q AA+ A + + D+R
Sbjct: 249 VVRAGDYLHRYGSAVGMSGQEASAARRAAGRLDSLDVR 286
>gi|116753584|ref|YP_842702.1| transcription initiation factor IIB [Methanosaeta thermophila PT]
gi|121694369|sp|A0B5T8.1|TF2B_METTP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116665035|gb|ABK14062.1| Transcription initiation factor IIB (TFIIB) [Methanosaeta
thermophila PT]
Length = 337
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + VCSECGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECGSRA-LVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A IY++ ++ RGR+ + + AA LY ACRQ + PRT+ EI V
Sbjct: 159 MASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEV 218
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR ++ ++L L+ + + D++ RFCS L + E +
Sbjct: 219 SR-VSRKEIGRTYRFVSRELSLKLMPTSPI------DYIPRFCSGLNLKGDVQAKGIEIL 271
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 272 RQAAEKEL 279
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 21/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + ++ D G+TVC ECGLV+E +D EWR F + S + RVG PT
Sbjct: 35 VCPECSGN--LIHDDDHGETVCQECGLVVEDTIVDRGPEWRAF-DASERDSKSRVGAPTT 91
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 151
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + A LY A R D PR++ E+
Sbjct: 152 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELEK 211
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YIV++L L E+ ++ RF S L ++++A + A+
Sbjct: 212 VSR-VDKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELDLSDEAERQARTL 264
Query: 234 VQKSEEFDI 242
++ ++E I
Sbjct: 265 LRDAKETGI 273
>gi|292654406|ref|YP_003534303.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|433424039|ref|ZP_20406390.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|448293951|ref|ZP_21484053.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448573512|ref|ZP_21640995.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|291370888|gb|ADE03115.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|432198180|gb|ELK54492.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|445569344|gb|ELY23918.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445718418|gb|ELZ70108.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 288
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 18/239 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + + R NR + +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+E+C V+ AT+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSK-ATE 182
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
E A + + LGL + +++ RF + L +++ + A+E V ++ +
Sbjct: 183 AEHQAAYGALNRDLGLPVAPA------DPTEYLPRFATKLDLDSDTERRAREYVAEARD 235
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC++C LV+E ID EWR F + + ++ RVG PT
Sbjct: 46 HCPECGGR--LVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 102
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I + A G LSS L W R ++ +R L A I
Sbjct: 103 NMMHDQGLSTNIGWQDKDAYGRSLSSRQREKMQRLRTWNERFRTRNSKERNLKQALGEID 162
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL T+++ ++ IY++ ++ GR+ + + A LY A RQ PR++ EI +
Sbjct: 163 RMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 222
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K EI R Y+V++LGL E+ ++ RF S+L + ++ + A +
Sbjct: 223 VSR-VEKAEIARTYRYVVRELGL------EVQPADPESYVPRFASDLDLADETERRAHDL 275
Query: 234 VQKSEE 239
+ ++E
Sbjct: 276 LSTAKE 281
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 128/249 (51%), Gaps = 22/249 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPTN 64
C C K ++V D+ +G+ C++CG V+ + EWR+FA +E GD R G PT+
Sbjct: 11 CQRCGK-GKLVTDNESGEMFCAKCGFVMTEKLQESGPEWRSFAHDEHGDR--ARTGAPTS 67
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG L++S L W NR P DR AF +
Sbjct: 68 LTMHDMGLATIINPANRDASGRPLAASMKSTIDRLRTWDNRSQVHEPVDRNYRQAFSELN 127
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+ D+L + + ++A IY+K D+ RGR+ AL+A+ LY ACR PR +K++
Sbjct: 128 RLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTATPRNLKDVEE 187
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
AN +K+I R +VK+L L M + + R S++G+ + + A
Sbjct: 188 AAN-IKRKDIARCYRLLVKELDL------RMPVTDSIQCVARISSHIGIAEKTKRYAVVV 240
Query: 234 VQKSEEFDI 242
++++++ ++
Sbjct: 241 LKEAQKHEV 249
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 20/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V D G+TVC +CGLV++ ID EWR F + D RVG PT
Sbjct: 37 LCPECSSPT-LVTDDGRGETVCEDCGLVVDEDEIDRGPEWRAFDSAERDQKS-RVGAPTT 94
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS+ L W R D R L A I
Sbjct: 95 NMMHDRGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 154
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL ++++ A+ IY++ + GR+ + + A L+ A R PR++ E+
Sbjct: 155 RMASALGLPESVRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVAH 214
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ ++E RA YIV++L S+E+ +++ RF S++ + + + A+E
Sbjct: 215 VSR-VDEEEFERAYRYIVREL------SLEIKPADPTEYLPRFASDIDVPKETERTAREL 267
Query: 234 VQKSEEFDI 242
++ ++ I
Sbjct: 268 LENAKTVGI 276
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+++ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L + ++ ++A IY+K ++ RGR+ AL+A+ LY ACR + PRT+K+I
Sbjct: 128 LKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+N +K+I R ++++L L +M + + R S G++ + + A + +
Sbjct: 188 SN-IKRKDIARCYRLLLRELNL------KMPVVDPVKCISRIASKAGLSEKTKRKATKIL 240
Query: 235 QKSEEFDI 242
Q +EE I
Sbjct: 241 QTAEEQKI 248
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV 168
K I+ ++ + GL K +A +I + E+QK S G++ L AA LY+AC + +T
Sbjct: 216 VKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQ 275
Query: 169 KEICSVA 175
+++ A
Sbjct: 276 RDVAEAA 282
>gi|353237099|emb|CCA69080.1| related to RRS1-regulator of ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 668
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 31 LVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLAD-GGLSTVIAKPNGASGEFLSS 89
LV ES D+ TFANE GD DP RVGGP NP+ LST I+ +G SG S
Sbjct: 335 LVTESSIPDQN----TFANEEGD-DPSRVGGPQNPIYEGLDSLSTSISFRDGNSGH--SR 387
Query: 90 SLGRWQNRGSN--PDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
L R R SN R L + F+ I +M D+ L ++ D A +Y++ E++K RG+
Sbjct: 388 ELQRAAARLSNDKSQRSLTVVFEQIQSMCDQYSLPRSVSDTAKMLYRRTEEEKLLRGKQP 447
Query: 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTI 207
DA++AACL+IACRQ PRT KEI + N KK+IG+ + + + L G + +
Sbjct: 448 DAIVAACLFIACRQAAVPRTFKEIVELTN-VPKKQIGQCYKALERAFNLAPGATAANPSG 506
Query: 208 HA 209
H+
Sbjct: 507 HS 508
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 17/204 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDET-SEWRTFANESGDNDPVRVGGPTN 64
C C K ++V D + G+ CS CG V E+ I E EWR+F+N+ GD RVG T+
Sbjct: 18 CPACTK-AKMVLDETTGELFCSVCGFV-ETEKITEGGPEWRSFSNDGGDRS--RVGAGTS 73
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSSLGR-------WQNRG---SNPDRGLILAFKTIA 113
+ D GLST+I N A+G+ L SS+ + W +R S+ +R L A +
Sbjct: 74 ITMHDMGLSTIIGVQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSSERNLRQALSEMD 133
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+ D+L L T+ ++A IY+K ++K +GR+ L+AAC+Y +CR + PRT+ +I
Sbjct: 134 KLKDKLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTETPRTLDDIAE 193
Query: 174 VANGATKKEIGRAKEYIVKQLGLE 197
N +K++ R+ I ++L L+
Sbjct: 194 GIN-IKRKDVARSYRIIFRELDLK 216
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 127/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++V D+ + C CGLVLE ID EWR F ++ RVG
Sbjct: 35 TKTVCPECGSR-QLVQDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRS-RVGA 92
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 93 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 152
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ ++ RGR+ + + AA LY ACRQ + PRT+ E
Sbjct: 153 ELDRMASALGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDE 212
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 213 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLTLKGEVQSRA 265
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 266 VEILRQAGEKEL 277
>gi|330833963|ref|YP_004408691.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566102|gb|AEB94207.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 305
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 19/238 (7%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D G
Sbjct: 13 QDKIIFDADRGEYICSENGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRG 71
Query: 72 LSTVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
LST+I K A G L +WQ R S+ DR L A + + + LG
Sbjct: 72 LSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLG 131
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L ++KD IY+K ++ RGR+ ++++AA +Y +CR+ RT+ EI A +
Sbjct: 132 LPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIAQYTK-ANR 190
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
KE+ R ++++L +V + D++ R S LG++ ++K A E + K++
Sbjct: 191 KEVARCYRLLLREL------NVGVPVSDPKDYVTRIGSLLGLSGASMKLAAEILDKAK 242
>gi|322371117|ref|ZP_08045669.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549107|gb|EFW90769.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 118/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+ VC +CGLV+E ++D EWR F + S RVG PT
Sbjct: 29 CPECGGP--LVTDEERGERVCDDCGLVVEEDAVDRGPEWRAF-DASEREQKSRVGAPTTN 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 86 MMHDKGLSTNIDWRDRDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL T+++ A+ IY++ D+ GR+ + + LY A RQ PR++ E+ +V
Sbjct: 146 MASSLGLPDTVRETASVIYRRALDEDLLPGRSIEGVATGALYAAARQARTPRSLDELTAV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R YI ++LGL E+ ++ RF S L ++++ + A+ +
Sbjct: 206 SR-VEKDEIARTYRYIARELGL------EIEPADPKSYVPRFASELDLSDETERRARSLL 258
Query: 235 QKSEE 239
+ E
Sbjct: 259 DTATE 263
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 58 CPECDGR--LMSDAEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 114
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 115 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 174
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++ EI V
Sbjct: 175 MASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAGV 234
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGLE + + ++ RF S+L ++++ + A++ +
Sbjct: 235 SR-VEKDEIARTYRYVIRELGLEVKPADPVS------YVPRFASDLDLSDETERRARQLL 287
Query: 235 QKSEEFDI 242
+ ++E I
Sbjct: 288 ETAKESGI 295
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 20/247 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K++ ++ D G+ C +CG V+ S + EWR+F + N R G PT+
Sbjct: 11 CPRCAKNS-LLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHGNK-ARAGAPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIAT 114
+ D GLST+I N ASG+ L++S L W +R + DR L A +
Sbjct: 69 TMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L L + ++A IY+K ++K RGR+ A++A+ LY ACR + PRT+ ++
Sbjct: 129 LKDKLSLSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVGEA 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
AN KK+I R + ++L L +M + + R S +G+ + + A + +
Sbjct: 189 AN-LKKKDIARCYRLLHRELEL------KMPVVDPIQCLARIASRIGITEKTKRYAAKVL 241
Query: 235 QKSEEFD 241
+ S+E +
Sbjct: 242 KISQEHE 248
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 21/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D +TVC++CGLV+E ID EWR F + D RVG PT
Sbjct: 28 CPECGG--QLVSDEEHAETVCADCGLVVEEDEIDRGPEWRAFDSSERDQKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISQV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E+ R YIV++L S+E+ ++ RF S+L ++ + + ++E +
Sbjct: 205 SR-VDRMELTRTYRYIVREL------SLEVKPADPEHYVPRFISDLDLSEETERTSRELL 257
Query: 235 Q 235
+
Sbjct: 258 E 258
>gi|289583194|ref|YP_003481660.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448283340|ref|ZP_21474616.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532747|gb|ADD07098.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445574256|gb|ELY28759.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 349
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 55 CPECDGR--LMSDTEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 111
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 112 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 171
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++ EI V
Sbjct: 172 MASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAGV 231
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGLE + + ++ RF S+L ++++ + A++ +
Sbjct: 232 SR-VEKDEIARTYRYVIRELGLEVQPADPVS------YVPRFASDLDLSDETERRARQLL 284
Query: 235 QKSEEFDI 242
+ ++E I
Sbjct: 285 ETAKESGI 292
>gi|448733793|ref|ZP_21716035.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445802313|gb|EMA52620.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 335
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 21/249 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+T C+ECGLV++ + ID EWR F + D R G
Sbjct: 29 TERVCPECGGR--LVNDAEHGETTCAECGLVVDENEIDHGPEWRAFDSAERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFK 110
PT L+ D GLS+ I N A+G LS+ L W R ++ +R L A
Sbjct: 86 PTTKLMHDEGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRNSKERNLKQALG 145
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M LG+ +++ A+ IY++ + GR+ + + A LY A RQ PR+V++
Sbjct: 146 EIERMGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAAIRQMGLPRSVED 205
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ +V + E RA YI ++LGL E+G ++ RF S+L +N++ + A
Sbjct: 206 VAAVTR-VDEMEFKRAYRYINQELGL------EIGPPDPQQYVSRFASDLDVNDETERRA 258
Query: 231 QEAVQKSEE 239
++ ++ ++E
Sbjct: 259 RDLLRTAQE 267
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 65 CPECGGR--LITDDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 121
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 122 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 181
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY + RQ PR++ EI +V
Sbjct: 182 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYASARQAGTPRSLDEISAV 241
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R YI+++LGLE + ++ RF S+L ++++ + A+E +
Sbjct: 242 SR-VDKMELTRTYRYIIRELGLEVKPA------DPEHYVPRFVSDLDLSDETERMARELL 294
Query: 235 QKSEE 239
+ + +
Sbjct: 295 ESARQ 299
>gi|91772962|ref|YP_565654.1| transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
gi|91711977|gb|ABE51904.1| Transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
Length = 337
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 130/248 (52%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + + D+ + VC++CGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRS-LEQDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI V
Sbjct: 159 MASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEV 218
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ ++KEIGR +I ++L S+++ D++ RFCS L + + E +
Sbjct: 219 SR-VSRKEIGRTYRFISREL------SLKLMPTSPIDYVPRFCSGLNLKGEVQSRGVEIL 271
Query: 235 QKSEEFDI 242
+++ E ++
Sbjct: 272 RQASEKEL 279
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 21/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D +TVC++CGLV+E ID EWR F + D RVG PT
Sbjct: 28 CPECGG--QLVSDEEHAETVCTDCGLVVEEDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISQV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E+ R YIV++L S+E+ ++ RF S+L ++ + + ++E +
Sbjct: 205 SR-VDRMELTRTYRYIVREL------SLEVKPADPEHYVPRFISDLDLSEETERTSRELL 257
Query: 235 Q 235
+
Sbjct: 258 E 258
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 27/244 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ GR+ + + + LY A R PR++ E+ V
Sbjct: 146 MASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEMARV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K E+ R YIV++L LE + D ++ RF S+L ++ + + A+
Sbjct: 206 SR-VEKMELTRTYRYIVRELSLE---------VQPADPEHYLPRFISDLELSEETQRQAR 255
Query: 232 EAVQ 235
+ V+
Sbjct: 256 DLVE 259
>gi|300712884|ref|YP_003738696.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|448295398|ref|ZP_21485466.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|299126568|gb|ADJ16905.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445584335|gb|ELY38658.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 340
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 117/242 (48%), Gaps = 21/242 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D G+T C+ECGLV++ ID EWR F + D R G PT
Sbjct: 32 VCPECGGR--LVNDAEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGAPTT 88
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
L+ D GLS+ I N A G LSS L W R ++ +R L A I
Sbjct: 89 KLMHDKGLSSQIGWQNKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIE 148
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M LG+ +++ A+ IY++ + GR+ + + A LY A RQ PR+V+E+ +
Sbjct: 149 RMGSALGVPEDVRETASVIYRRALSEDLLPGRSIEGVTTAALYAAIRQMGLPRSVEEVGA 208
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ + E RA YI ++L LE G ++ RF S+L +N++ A+E
Sbjct: 209 VSR-VDEMEFKRAYRYINQELSLEVGPPA------PDQYLPRFASDLNVNDETEGRAREL 261
Query: 234 VQ 235
+Q
Sbjct: 262 IQ 263
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 128/248 (51%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 35 CPECNGR--LVADDEHAETVCADCGLVVEEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEIDR 151
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + + GR+ + + + LY A RQ PR++ EI +V
Sbjct: 152 MASALGLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 211
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y+V++LGLE + + ++ RF S+L ++++ A++ +
Sbjct: 212 SR-VDKAEVARTYRYVVRELGLEVQPADPVS------YVPRFASDLDLSDETELRARDLL 264
Query: 235 QKSEEFDI 242
++E I
Sbjct: 265 TTAKEKGI 272
>gi|448411807|ref|ZP_21576163.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669741|gb|ELZ22349.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 329
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 19/231 (8%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
+ D G+TVC ECG+VLE +D EWR+F + RVG PT +L D GLS+V
Sbjct: 44 ITDEKRGETVCQECGVVLEEDVVDRGPEWRSF-DARDKAQKSRVGSPTTEMLHDKGLSSV 102
Query: 76 IAKPN-GASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVAT 124
I N A+G+ LS S L W R S DR L A I M+ LG+
Sbjct: 103 IDWQNKDANGQTLSAKKREQMSRLRTWDERFRSQSAQDRNLKQALGEIDRMASALGIPKD 162
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
++ A+ IY++ D++ GR+ +A+ LY RQ PRT+ E+ +V+ +KE
Sbjct: 163 ARETASVIYRRALDEELIPGRSIEAMATGSLYAGARQAGVPRTLDELETVSR-VDRKEFA 221
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
RA YI ++L L M ++ R S+L + + + A E ++
Sbjct: 222 RAYRYIARELEL------AMEPTDPAQYVPRLVSDLDLPEETKQRAVELLE 266
>gi|340344692|ref|ZP_08667824.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519833|gb|EGP93556.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 305
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 20/247 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K+ ++ D G+ C +CG V+ S + EWR+F + N R G PT+
Sbjct: 11 CPRCAKNA-LLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHGNK-ARAGAPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIAT 114
+ D GLST+I N ASG+ L++S L W +R + DR L A +
Sbjct: 69 TMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L L + ++A IY+K ++K RGR+ A++A+ LY ACR + PRT+ ++
Sbjct: 129 LKDKLALSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVGEA 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
AN KK+I R + ++L L +M + + R S +G+ + + A + +
Sbjct: 189 AN-LKKKDIARCYRLLHRELDL------KMPVVDPIQCVARIASRIGITEKTKRYAAKVL 241
Query: 235 QKSEEFD 241
+ S+E +
Sbjct: 242 KISQEHE 248
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C + ++V D+ +G+ CS+CG V+ + EWR+F + G N R G
Sbjct: 5 TKELCPRCAQG-KLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNK-ARAGA 62
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFK 110
PT+ + D GL+T+I N ASG L++S L W +R P DR AF
Sbjct: 63 PTSLTMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFS 122
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ + D+L + + ++A IY+K ++ RGR+ AL+A+ LY ACR PR +K+
Sbjct: 123 ELNRLKDKLAISDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLKD 182
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ AN +K+I R +VK+L L +M + + R S +G+ + + A
Sbjct: 183 VEEAAN-IKRKDIARCYRLLVKELDL------KMPVTDSIQCVARIASRIGIAEKTKRYA 235
Query: 231 QEAVQKSEEFDI 242
+ ++ ++E ++
Sbjct: 236 VKVLKLAQENEV 247
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H+ +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGRLRSDSEHA--ETVCQDCGLVVEEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + + LY A RQ PR++ EI +V
Sbjct: 148 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEISAV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGL E+ ++ RF S L ++++ + A+ +
Sbjct: 208 SR-VGKDEIARTYRYVIRELGL------EVQPADPESYVPRFASELELSDETERRARSLL 260
Query: 235 QKSEE 239
Q ++E
Sbjct: 261 QTAKE 265
>gi|448444597|ref|ZP_21589887.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445686010|gb|ELZ38351.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 45 CPECGGRTRV----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 98
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 99 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 158
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +D+ RGR+ + AACLY+ACR D RTV EIC+ A AT+
Sbjct: 159 LPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACLYVACRTADVARTVGEICAEAK-ATE 217
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL + +++ RF S+L + + A E +++ E
Sbjct: 218 AEHRAAFDAMNRELGL------PIAPTGPAEYLPRFASDLDCDAAVERRAGELAERAVEE 271
Query: 241 DI 242
I
Sbjct: 272 GI 273
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 19/236 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VCS+CGLV+++ +DE EWR F ++ RVG P + D GLST+I
Sbjct: 56 DYERAELVCSDCGLVVDAELVDEGPEWRAFDSDQQMKRS-RVGAPMTYAIHDKGLSTMID 114
Query: 78 KPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N S G+ +SS L +WQ R + +R L A + M+ LGL T++
Sbjct: 115 WRNRDSYGQSISSKNRAQLYRLRKWQRRIRIYNAAERNLAFALSELDRMASALGLPRTVR 174
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI V+ ++ EIGR
Sbjct: 175 ETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRIEIGRT 233
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+I ++L L+ + + D++ RFCS L + ++ E ++++ E +I
Sbjct: 234 YRFISRELSLKLMPTSPI------DYVPRFCSGLKLKSEVQSKGVEILRQASEKEI 283
>gi|448497537|ref|ZP_21610490.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445699768|gb|ELZ51788.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 340
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 61 CPECGGRTRV----DGAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 114
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 115 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 174
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +D+ RGR+ + AAC+Y+ACR D RTV E+C+ A AT+
Sbjct: 175 LPDSVRDAACALFDSAQDESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAK-ATE 233
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL S +++ RF S+LG + + A E +++ E
Sbjct: 234 DEHRAAFDAMNRELGLPIAPS------GPAEYLPRFASDLGCDPAVERRAGELAERAVEE 287
Query: 241 DI 242
I
Sbjct: 288 GI 289
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 112/203 (55%), Gaps = 15/203 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C ++V D + G+ C +CGLV+ + +EWR+F+N+ +++ RVG T+
Sbjct: 12 CPSCGDK-KMVTDQTTGELFCGKCGLVVTDKIAETGAEWRSFSND--ESNRTRVGAGTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLST+I N ++G+ LS+S L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTIIGAANKDSTGKPLSASVRSSIERLRTWDSRTQAHSSADRNLRQALNEMDK 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L L ++ ++A IY+K ++K RGR+ L+AACLY +CR + PRT+ +I
Sbjct: 129 LKDKLALTDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAKG 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLE 197
N +K++ R I ++L L+
Sbjct: 189 IN-IRRKDVARCYRLIFRELELK 210
>gi|448606561|ref|ZP_21658987.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738769|gb|ELZ90281.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 288
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 18/234 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + + R NR + +R + AF I ++ L
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQLARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L I+D+A +++ +++ RGR+ + AAC+Y ACR R+V+E+C V+ +T+
Sbjct: 124 LPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSK-STE 182
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
E A + + LGL + +++ RF + L +++ + A+E V
Sbjct: 183 AEHQAAYGALNRDLGLPVAPA------DPTEYLPRFATKLDLDSDTERRAREYV 230
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 117/237 (49%), Gaps = 21/237 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 35 CPECGGR--LVSDAEHAETVCEDCGLVVDEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 151
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 152 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 211
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+ K EI R Y+V++LGL E+ ++ RF S+L + ++ + A+
Sbjct: 212 SR-VEKDEIARTYRYVVRELGL------EVQPADPESYVPRFASDLELPDETERRAR 261
>gi|448476239|ref|ZP_21603403.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815788|gb|EMA65707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 334
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 18/223 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + + VC++CGLV+++ ID EWR+FA++ D +P R G P
Sbjct: 55 CPECGGRTRV----DSSERVCTDCGLVVDADRIDHGPEWRSFADD--DTNPKRTGAPLTR 108
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ LG
Sbjct: 109 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRARISTKRDRNKVYAYTEIRRLTGALG 168
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +D+ RGR+ + AAC+Y+ACR RTV E+C A AT+
Sbjct: 169 LPNSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTAAVARTVSEVCDAAK-ATE 227
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
E A + + ++LGL +G +++ RF S+L ++
Sbjct: 228 DEHRAAFDAMNRELGL------PIGPTGPAEYLPRFASDLDVD 264
>gi|301098814|ref|XP_002898499.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
gi|262104924|gb|EEY62976.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
Length = 308
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C +C +VV D SAGD VC +CG++L ID++ EWRTFAN+ DP RVG
Sbjct: 10 CRECGSK-DVVTDFSAGDVVCRDCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGDV 68
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFK----TIATMSDR 118
+ L LST + P G + + + + D + + I ++D
Sbjct: 69 ADARLDSLSLSTYLVDPKKGGGGADGEAGRKHKRPNISSDSAKVKRMQRNMARIQEVADY 128
Query: 119 LGLVATIKDRANEIYKKVEDQ-KSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG 177
L L I + A ++Y + E Q + RG ++++ A L+IACR+ R++KE A+G
Sbjct: 129 LSLPKKIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLKEF-EEASG 187
Query: 178 ATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
K+ IG++ + ++L LE Q+ ++++RFCS LG+ N+ A +K+
Sbjct: 188 IPKRRIGKSFMSLQRRLDLEVKQAT------TEEYVQRFCSRLGLPNKTQMIAHTVAKKA 241
Query: 238 EEFDI 242
+ ++
Sbjct: 242 DSLEL 246
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 18/241 (7%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
H ++V+D G+ VC + G V+E IDE EWR F E R GGP + D G
Sbjct: 15 HDKLVYDSEHGEYVCLDTGEVVEEKIIDERPEWRAFTPEERGRR-ARTGGPLTTTVHDMG 73
Query: 72 LSTVIAKPNG-ASGEFLSSS------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGL 121
+T I N A+G L L +WQ R ++ DR L A + + D L L
Sbjct: 74 FATAIDYSNKDAAGRKLMGKRQELVKLRKWQARTRILTSMDRNLAQAMNELERLGDLLNL 133
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ +K+ A IY++ ++ RGR+ ++++AA +Y+ACR+ PR++ E+ S +K
Sbjct: 134 PSHVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSLDEV-SRHTRIGRK 192
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241
+I R ++++L +++GT D++ R LG+ VK A E + + E
Sbjct: 193 DIARCYRLLLREL------DIKVGTTDPVDYVPRIVHALGLPGTVVKKAVELLNVAREHG 246
Query: 242 I 242
+
Sbjct: 247 V 247
>gi|325187852|emb|CCA22395.1| transcription initiation factor IIB putative [Albugo laibachii
Nc14]
Length = 303
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 21/246 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C DC ++V D+ AGD VC CG+VL +D+T EWRTF+N+ D RVG
Sbjct: 8 CVDCGSD-DIVTDYGAGDVVCRSCGIVLGERIVDDTPEWRTFSNDDRGGDATSKSRVGQV 66
Query: 63 TNPLLADGGLSTVIA-----KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
+ + D L+TV+ K NG + + L N+ S R + I +S+
Sbjct: 67 EDQGIEDATLTTVLVDSTSEKNNGKAQTAMLPKL----NKESAHVRRMQNMTNRIREISE 122
Query: 118 RLGLVATIKDRANEIYKKVEDQKS-SRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176
L L I + A ++Y++ E + + RG ++++ AA ++IACRQ RT+KE+ A+
Sbjct: 123 TLSLPKIILEVAMQVYQEAERKGTLMRGPEKESMAAAVIFIACRQAGHARTLKEL-EGAS 181
Query: 177 GATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK 236
G KK+IG++ + KQL + Q+ +++ RFCS LG+ + A + +K
Sbjct: 182 GVMKKKIGKSFLILKKQLNFDFRQAT------TTNYVERFCSRLGLPAKTQVIAHDVAKK 235
Query: 237 SEEFDI 242
++ +
Sbjct: 236 AQTLGL 241
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 47 CPECSGR--LVSDAEHAETVCEDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 163
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++ EI +V
Sbjct: 164 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEISAV 223
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGLE + + ++ RF S+L ++++ + A+ +
Sbjct: 224 SR-VEKDEIARTYRYVIRELGLEVQPADPVS------YVPRFASDLELSDETERRARTLL 276
Query: 235 QKSEEFDI 242
+ ++E I
Sbjct: 277 ETAKESGI 284
>gi|294495329|ref|YP_003541822.1| transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
gi|292666328|gb|ADE36177.1| Transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
Length = 337
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 125/236 (52%), Gaps = 19/236 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VC++CGLV+++ +DE EWR F ++ RVG P + D GLST+I
Sbjct: 52 DYERAELVCADCGLVVDADFVDEGPEWRAFDHDQRMKRS-RVGAPMTYTIHDKGLSTMID 110
Query: 78 KPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N S G+ +SS L +WQ R + +R L A + M+ LGL T++
Sbjct: 111 WRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVR 170
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI V+ ++KEIGR
Sbjct: 171 ETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKEIGRT 229
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+I ++L S+++ D++ RFCS L + + E ++++ E ++
Sbjct: 230 YRFISREL------SLKLMPTSPIDYVPRFCSGLTLKGEVQSRGVEILRQASEKEL 279
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 17/204 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETS-EWRTFANESGDNDPVRVGGPTN 64
C C K ++V D + G+ CS CG V E+ I E EWR+F+N+ GD RVG T+
Sbjct: 18 CPSCTK-AKMVLDENTGELFCSFCGFV-EAEKITEGGPEWRSFSNDGGDRS--RVGAGTS 73
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSSLGR-------WQNRG---SNPDRGLILAFKTIA 113
+ D GLST+I N A+G+ L SS+ + W +R S+ +R L A +
Sbjct: 74 ITMHDMGLSTIIGAQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSAERNLRQALSEMD 133
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+ D+L L + ++A IY+K ++K +GR+ L+AAC+Y ACR + PRT+ +I
Sbjct: 134 KLKDKLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRITETPRTLDDIAE 193
Query: 174 VANGATKKEIGRAKEYIVKQLGLE 197
N +K++ R+ I ++L L+
Sbjct: 194 GIN-IKRKDVARSYRIIFRELDLK 216
>gi|294896450|ref|XP_002775563.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881786|gb|EER07379.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 199
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 94/180 (52%), Gaps = 13/180 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWR+F++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRLGLV 122
+L GGL T + F +S L R N DR L K + + D L L
Sbjct: 72 MLHSGGLGTSVG--------FGNSRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALP 123
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I R +I K+++D +G+ L A Y+ACRQE R++KEI + A KK+
Sbjct: 124 DNIYTRCCQILKQMDDSGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEILA-AQPTVKKQ 182
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 15/208 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T + C C +++ D + G+ C +CG V+ D +EWR+F+N+ G+ R G
Sbjct: 7 ITGSKCPACGDK-KMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNK--ARTG 63
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
T+ + D GLSTVI N ++G+ LS+S L W +R S+ DR L A
Sbjct: 64 AGTSLTMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQAL 123
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D+L L + ++A IY+K ++K RGR+ L+AACLY +CR + PRT+
Sbjct: 124 NEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLD 183
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLE 197
++ N +K++ R I ++L L+
Sbjct: 184 DVAKGIN-IRRKDVARCYRLIFRELELK 210
>gi|448360606|ref|ZP_21549237.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
gi|445653219|gb|ELZ06091.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
Length = 271
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 19/220 (8%)
Query: 31 LVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPNGASGEFLSS 89
+V+E ID EWR F N + + RVG PT + D GL+T I K A G LSS
Sbjct: 1 MVIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYGRSLSS 59
Query: 90 S-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQ 139
L +WQ R D R L A M+ LG+ ++++ A+ +Y++ D+
Sbjct: 60 DKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYRRALDE 119
Query: 140 KSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG 199
RGR+ + + + LY ACR E PR++ E+ +V+ + EIGR YI ++LGL
Sbjct: 120 DLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSR-VNRMEIGRTYRYISQELGL--- 175
Query: 200 QSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
EM ++ ++ RFCS L + + A E + + E
Sbjct: 176 ---EMEPVNPKKYVPRFCSELDLPEEVQAKANEIIDTTAE 212
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 15/208 (7%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T + C C +++ D + G+ C +CG V+ D +EWR+F+N+ G+ R G
Sbjct: 19 VTGSKCPACGDK-KMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNK--ARTG 75
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
T+ + D GLSTVI N ++G+ LS+S L W +R S+ DR L A
Sbjct: 76 AGTSLTMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQAL 135
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ + D+L L + ++A IY+K ++K RGR+ L+AACLY +CR + PRT+
Sbjct: 136 NEMDKLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLD 195
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLE 197
++ N +K++ R I ++L L+
Sbjct: 196 DVAKGIN-IRRKDVARCYRLIFRELELK 222
>gi|448362505|ref|ZP_21551111.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647985|gb|ELZ00949.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 341
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 47 CPECGGR--LVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 163
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++ EI V
Sbjct: 164 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAGV 223
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGLE + + ++ RF S+L ++++ + A+ +
Sbjct: 224 SR-VEKDEIARTYRYVIRELGLEVQPADPVS------YVPRFASDLELSDETERRARTLL 276
Query: 235 QKSEEFDI 242
+ ++E I
Sbjct: 277 ETAKESGI 284
>gi|448364802|ref|ZP_21553379.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445657641|gb|ELZ10466.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 339
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 45 CPECGGR--LVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 101
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 102 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 161
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++ EI V
Sbjct: 162 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAGV 221
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGLE + + ++ RF S+L ++++ + A+ +
Sbjct: 222 SR-VEKDEIARTYRYVIRELGLEVQPADPVS------YVPRFASDLELSDETERRARTLL 274
Query: 235 QKSEEFDI 242
+ ++E I
Sbjct: 275 ETAKESGI 282
>gi|448356139|ref|ZP_21544886.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445633353|gb|ELY86541.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 364
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 70 CPECDGR--LMSDAEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 126
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 127 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 186
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY + RQ PR++ EI V
Sbjct: 187 MASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIEGV 246
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGLE + + ++ RF S+L ++++ + A++ +
Sbjct: 247 SR-VEKDEIARTYRYVIRELGLEVKPADPVS------YVPRFASDLDLSDETERRARQLL 299
Query: 235 QKSEEFDI 242
+ ++E I
Sbjct: 300 ETAKESGI 307
>gi|448732508|ref|ZP_21714784.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445804622|gb|EMA54863.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 342
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 129/259 (49%), Gaps = 30/259 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + + G+ VC +CGL+LE+ +ID EWR F N S RVG PT
Sbjct: 27 CPECESAS-LTNSADQGELVCDDCGLILETDNIDRGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I + A G LS+ L +WQ R D R L A
Sbjct: 85 TMHDKGLTTQIGWQDKDAYGRSLSAEKRSQMNRLRKWQERVRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ ++ IY++ + RGR+ +A+ A+ LY ACR+E PR+++E+ V
Sbjct: 145 MASALGVPRSVREVSSVIYRRALSEDLIRGRSIEAVAASALYAACRKEGIPRSLEEVTHV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGL--------------ETGQSVEMGT--IHAGDFMRRFCS 218
A +KEIGR YI ++L L + +E+G + ++ RFCS
Sbjct: 205 AR-VEQKEIGRTYRYIARELELGMRPVDPQKYVTYRYIARELELGMRPVDPQKYVPRFCS 263
Query: 219 NLGMNNQAVKAAQEAVQKS 237
+L ++ + A E ++ S
Sbjct: 264 SLDLSEEVQSKANEVIEAS 282
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGR--LVSDAEHAETVCDDCGLVVDEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 148 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIDAV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y++++LGL E+ ++ RF S+L + ++ + A++ +
Sbjct: 208 SR-VEKDEIARTYRYVIRELGL------EVQPADPESYVPRFASDLDLPDETERRARQLL 260
Query: 235 QKSEEFDI 242
+ +++ I
Sbjct: 261 KTAKDSGI 268
>gi|395324790|gb|EJF57224.1| hypothetical protein DICSQDRAFT_92561 [Dichomitus squalens LYAD-421
SS1]
Length = 359
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 23/256 (8%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP---VRVG 60
C DC+++ +V + GD VC CGLVL ID SEWR F + D RVG
Sbjct: 30 ICRDCQEYPPNIVEEFRDGDLVCGSCGLVLSDRIIDTRSEWREFTSTHSDETTHAHCRVG 89
Query: 61 GPTNPL-LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMS 116
+ L + L+T I+ +G+S +S L R + N +R + AF+ I M
Sbjct: 90 QVQDRLGVGLEHLATTISVDSGSS---ISQDLRRVARQAENLSPSERRVRQAFRDIDDMC 146
Query: 117 DRLGLVATIKDRANEIYKKV--EDQKSSRGRNQ---DALLAACLYIACRQEDKPRTVKEI 171
R+ L T+ D ++Y ++ E+ + SR R++ +A L AC +IACRQ PRT EI
Sbjct: 147 ARIQLPNTVLDITKQLYWRIDQENIRPSRLRSRAQYEATLGACFFIACRQARVPRTFIEI 206
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSV----EMGTIHAG--DFMRRFCSNLGMNNQ 225
C V + K++IGRA + ++ L +G +V E G G D + R+C+ LG+
Sbjct: 207 CQVTS-VDKQDIGRAYRELEQKFNLRSGSTVGYDEESGAYEGGPQDLLVRYCNYLGLPQS 265
Query: 226 AVKAAQEAVQKSEEFD 241
V + + V K E +
Sbjct: 266 VVSVSTDVVVKLRELE 281
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 12/237 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V+D G+ C CG +++ + ID ++R F + R+G P +
Sbjct: 11 CPNCG-STNLVYDPYRGEIYCQNCGEIIQENIIDLRPDYRIFDSNQWKKRS-RIGAPESI 68
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I +G L RWQ+R D R L A + ++ +L
Sbjct: 69 LLHDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLK 128
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI ++ K
Sbjct: 129 LPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISR-VDK 187
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KEIGR+ +I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 188 KEIGRSYRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRKAVEILEEA 240
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ +N P + + + +D LGL ++ +A E
Sbjct: 182 ISRVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRKAVE 235
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ +A R KE +V
Sbjct: 236 ILEEAYRKGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEIARVTEVTVRNRYKE-LV 294
Query: 192 KQLGLE 197
++LGL+
Sbjct: 295 EKLGLK 300
>gi|448348263|ref|ZP_21537115.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445643361|gb|ELY96413.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 271
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 19/220 (8%)
Query: 31 LVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPNGASGEFLSS 89
+++E ID EWR F N + + RVG PT + D GL+T I K A G LSS
Sbjct: 1 MIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYGRSLSS 59
Query: 90 S-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQ 139
L +WQ R D R L A M+ LG+ ++++ A+ +Y++ D+
Sbjct: 60 DKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYRRALDE 119
Query: 140 KSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG 199
RGR+ + + + LY ACR E PR++ E+ +V+ + EIGR YI ++LGL
Sbjct: 120 DLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSR-VNRMEIGRTYRYISQELGL--- 175
Query: 200 QSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
EM ++ ++ RFCS L + + A E + + E
Sbjct: 176 ---EMEPVNPKKYVPRFCSELDLPEEVQAKANEIIDTTAE 212
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 12/237 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++++D+ G+ C+ CG ++ +D EWR F + S R G P +
Sbjct: 10 CPSCG-SSKLIYDYERGEIFCAVCGSIVTQDIVDLRQEWRAF-DASQREKRSRTGAPESI 67
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I +G L +WQ+R D R L A + ++ +L
Sbjct: 68 LLHDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 127
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A K
Sbjct: 128 LPRHVEEEAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIAR-VDK 186
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KEI R+ +I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 187 KEIARSFRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIELLEEA 239
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 95 QNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAAC 154
+N P + + + +D LGL ++ RA E+ ++ ++ + G++ L+AA
Sbjct: 198 RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAA 257
Query: 155 LYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196
LYIA E + RT +E+ VA R KE +V++LGL
Sbjct: 258 LYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LVEKLGL 298
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 19/244 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C T +FD+ G +C++CG V+ H ID EWR F E + R GGP N
Sbjct: 39 VCPYCG-STTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKEAR-ARAGGPLN 96
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L ++ +T+ ASG+ L +WQ R ++ +R +I A ++
Sbjct: 97 RLTSEALTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELSR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+S +LG+ D A IY++V + RGR+ +A++AACL++ACR+ PR++ EI S
Sbjct: 157 ISSQLGIPKACVDEAMGIYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEI-SQ 215
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A++KE+ R I ++LG V + ++ R L ++ + +K A +
Sbjct: 216 YTRASRKEVARCFRLIARELG------VRLPLSDPKLYVPRIVEQLKLSGEILKEALNIL 269
Query: 235 QKSE 238
++++
Sbjct: 270 EQAK 273
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + +D+ + VC +CG ++E ID EWR F + R G P
Sbjct: 177 CPECG-STNLRWDYEKAELVCLDCGAIIEESLIDFGPEWRAF-DSYQKAKRQRTGSPIKY 234
Query: 66 LLADGGLSTVIAKPN-GASGEFLS----SSLGR---WQNR---GSNPDRGLILAFKTIAT 114
+ GL T I K N G LS S +GR W R S+ +R L +A +
Sbjct: 235 TKPNKGLVTEIDKYNRDIRGSKLSPQAASQMGRLRKWHKRSSIASSIERNLTIAMGDLER 294
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+S LGL + I++ A +Y+K ++ RGR ++++AA +Y+ CRQ PRT+ EI V
Sbjct: 295 ISSYLGLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAVIYMICRQYGIPRTLDEISEV 354
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ G TKKEIGR ++ K+L V++ + ++ RF S LG++ + + A+E +
Sbjct: 355 S-GITKKEIGRTYRFLKKEL------YVDVPLTNPIYYVPRFASALGLSGKVQEKAKEIL 407
Query: 235 QKSEE 239
++ E
Sbjct: 408 NEAVE 412
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 19/244 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C T +FD+ G +C++CG V+ H ID EWR F E + R GGP N
Sbjct: 39 VCPYCG-STTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKETR-ARAGGPLN 96
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L ++ +T+ ASG+ L +WQ R ++ +R +I A ++
Sbjct: 97 RLTSEALTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELSR 156
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+S +LG+ D A +Y++V + RGR+ +A++AACL++ACR+ PR++ EI S
Sbjct: 157 ISSQLGIPKACVDEAMGVYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEI-SQ 215
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A++KE+ R I ++LG V + ++ R L ++ + +K A +
Sbjct: 216 YTRASRKEVARCFRLIARELG------VRLPLSDPKLYVPRIVEQLKLSGEILKEALNIL 269
Query: 235 QKSE 238
++++
Sbjct: 270 EQAK 273
>gi|222479036|ref|YP_002565273.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451938|gb|ACM56203.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 324
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECDGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L L E+ ++ RF S+L ++ ++ A+ +
Sbjct: 207 SR-VEKAEIARTYRYVVRELKL------EVKPADPEQYVPRFASDLELSEESEMRAKSLL 259
Query: 235 QKSEE 239
+ ++E
Sbjct: 260 RNAKE 264
>gi|222478511|ref|YP_002564748.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451413|gb|ACM55678.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 330
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 51 CPECGGRTRV----DAAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 104
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 105 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 164
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +D+ RGR+ + AAC+Y+ACR D RTV EIC+ A AT+
Sbjct: 165 LPDSVRDTACTLFASAQDESLLRGRSLEGFAAACVYVACRTADVARTVGEICAEAK-ATE 223
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL + +++ RF S L + + A E +++ E
Sbjct: 224 AEHRAAFDAMNRELGL------PIAPTGPAEYLPRFASELDCDADVERRAGELAKRAVEE 277
Query: 241 DI 242
I
Sbjct: 278 GI 279
>gi|403350014|gb|EJY74453.1| Transcription initiation factor IIB [Oxytricha trifallax]
Length = 388
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 19/241 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVRVGGPT 63
C +CK+ +V +H G VC CGLV S ID++SEWRTF++E+ G ++P RVGG
Sbjct: 91 CDECKRAM-LVTNHVEGTLVCQGCGLVQLSRIIDDSSEWRTFSSETSNGGSNPSRVGGKL 149
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGL 121
NP L++ G+ T + GA S + +W +R S D+ + + I + L L
Sbjct: 150 NPYLSNHGIDTQVTG-KGA------SEIQKWSDRSSLTAKDKLITQGLRMIKEQAHLLNL 202
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+A+EIYK++ED+ +G++ +A ++ A R +P+++K I S A T K
Sbjct: 203 KEAAITKASEIYKEIEDRGILKGKSVKGKVAGAIFFASRLVGQPKSLKHILS-ATEVTVK 261
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241
E+ + I ++L + E TI + D R+ C+ LG+ V AA+ + +
Sbjct: 262 ELNSCLKRI-RELFPD-----ERVTITSKDIARQACNRLGLAMDVVYAAEMTAENITNLE 315
Query: 242 I 242
I
Sbjct: 316 I 316
>gi|409731108|ref|ZP_11272645.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722791|ref|ZP_21705320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788613|gb|EMA39320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 336
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 126/252 (50%), Gaps = 21/252 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+TVC+ECGLV++ + ID EWR F + + N+ R G
Sbjct: 30 TEQVCPECGGR--LVSDTEHGETVCNECGLVVDENEIDHGPEWRAF-DAAERNEKKRTGA 86
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFK 110
PT ++ D GLS+ I N A G LSS L W R ++ +R L A
Sbjct: 87 PTTKMMHDKGLSSQIGWQNKDAYGNALSSRKRQQMQRLRTWDERFRTRNSKERNLKQALG 146
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LG+ +++ A+ IY++ + GR+ + + A LY RQ PR+V+E
Sbjct: 147 EIDRMASALGVPKDVRETASVIYRRALAENLLPGRSIEGMSTAALYAGIRQMGLPRSVEE 206
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ +V+ + E RA YI ++L L ++ ++ RF S+L ++ + + A
Sbjct: 207 VGAVSR-VDEMEFKRAYRYINQELDL------QIAPPKPQQYLSRFASDLDVSEETERRA 259
Query: 231 QEAVQKSEEFDI 242
+E + +EE I
Sbjct: 260 RELLTTAEEQAI 271
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 22/240 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C H E ++ +T+C +CGLVL + ID EWR+FA+++ +P R G
Sbjct: 25 TPVSCPECGGHPE----NTGEETICGDCGLVLSEYRIDHGPEWRSFADDT--TNPKRTGA 78
Query: 62 PTNPLLADGGLSTVIAKPNGASG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIAT 114
P D GLST I + +G +F + L R NR + +R + AF I
Sbjct: 79 PLTRSRHDRGLSTEIGRSIRLTGRKRRQF--ARLRRQHNRARISTKRERNQVYAFTEIRR 136
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
++ L L I+D A +++ + + RGR+ + AAC+Y ACR RT++EI +
Sbjct: 137 LTGALSLPKQIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDI 196
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A AT E A + ++LGL +G I ++ RF S L + + + A E +
Sbjct: 197 AK-ATSAEQRAAYTALNRELGL------PIGPIDPAQYLPRFASELELPSNIERRACEYI 249
>gi|448466721|ref|ZP_21599226.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445813581|gb|EMA63558.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 336
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC +CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 57 CPECGGRTRV----DAAERVCDDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ +G
Sbjct: 111 SRHDRGLSTDIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGAMG 170
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ + + RGR+ + AAC+Y+ACR D RTV E+C+ A AT+
Sbjct: 171 LPDSVRDAACALFDSAQSESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAK-ATE 229
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL + G+++ RF S L + + A E ++ E
Sbjct: 230 AEHRAAFDAMNRELGL------PIAPTGPGEYLPRFASELDCDADVERRAGELADRAVEE 283
Query: 241 DI 242
I
Sbjct: 284 GI 285
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 22/240 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C H E ++ +T+C +CGLVL + ID EWR+FA+++ +P R G
Sbjct: 25 TPVSCPECGGHPE----NTGEETICGDCGLVLSEYRIDHGPEWRSFADDT--TNPKRTGA 78
Query: 62 PTNPLLADGGLSTVIAKPNGASG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIAT 114
P D GLST I + +G +F + L R NR + +R + AF I
Sbjct: 79 PLTRSRHDRGLSTEIGRSIRLTGRKRRQF--ARLRRQHNRARISTKRERNQVYAFTEIRR 136
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
++ L L I+D A +++ + + RGR+ + AAC+Y ACR RT++EI +
Sbjct: 137 LTGALSLPKQIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDI 196
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A AT E A + ++LGL +G I ++ RF S L + + + A E +
Sbjct: 197 AK-ATSAEQRAAYTALNRELGL------PIGPIDPAQYLPRFASELELPSDIERRACEYI 249
>gi|110667584|ref|YP_657395.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803024|ref|YP_005839424.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625331|emb|CAJ51753.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728516|emb|CCC39669.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 369
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 20/242 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ TE++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 64 HCPECES-TELITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTT 121
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
L+ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 122 KLMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 181
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL ++++ A+ IY++ D+ GR+ + + A L+ A R PR++ E+
Sbjct: 182 RMASALGLPESVRETASVIYRRALDEDLLPGRSIEGISTAALHAAARMAQVPRSIDEVAR 241
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ + E RA YIV++L L E+ +++ RF S+L + + + A+E
Sbjct: 242 VSR-VDEDEFERAYRYIVRELSL------EIQPADPAEYVPRFASDLEVPKETERTAREL 294
Query: 234 VQ 235
++
Sbjct: 295 LE 296
>gi|448737841|ref|ZP_21719874.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
gi|445802803|gb|EMA53104.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
Length = 271
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 15/231 (6%)
Query: 17 FDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI 76
D + +T C +CGLV+ +D EWR F E G D R G P D GLST I
Sbjct: 1 MDDAGEETYCLDCGLVIGEDRVDRGPEWRNF--EDGP-DRKRTGAPLTRSRHDRGLSTEI 57
Query: 77 AKPNGASGE--FLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+ +G L + L R NR S +R + F + M LGL +I+DRA
Sbjct: 58 GRSTRLTGRKRRLFARLRRQHNRTRISSRAERNRVYGFTEVRRMVGALGLPDSIRDRACV 117
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
+++ +++ RGR+ + AA +Y CR E RT+ EI +VA AT+ E+ A + +
Sbjct: 118 LFESAQNEDLLRGRSLEGFAAAAVYAVCRTEALSRTLAEIGTVAK-ATRDELTAAYDALN 176
Query: 192 KQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
++LGL TG I +++ RF + L + N+ + A+ V+KS + +
Sbjct: 177 RELGLPTGP------IDPEEYLARFANQLDLPNEIERRARALVEKSHDLGL 221
>gi|378732425|gb|EHY58884.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 121/256 (47%), Gaps = 24/256 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVG 60
T C DCK+ + + +A DT+C+ CG+VL I SEWRTF ++ G DP RVG
Sbjct: 27 THLICPDCKQVPPDLIEENA-DTICANCGMVLAERLISYESEWRTFNSDEGKGEDPNRVG 85
Query: 61 GPTNPLLADGGLSTVIAK--PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
N LL T+I PN S E + + D+ L A+ + ++
Sbjct: 86 EADNELLLTNNAGTMIGGGGPN-VSRETRKLKKAQAMQLENKADKALQAAYAQVEAWGEK 144
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
L A +K A +K+V + + RG+ D +LA CL+IACRQ PR+ EI + +
Sbjct: 145 AKLTAPVKMAAKMYFKRVYEANALRGKQTDVILAGCLFIACRQLKTPRSFTEIFGLTS-V 203
Query: 179 TKKEIGRAKEYIVKQL---GLETGQSVE-MGTIHAGDFMR--------------RFCSNL 220
KKEIGRA + + K L + Q+VE G I D + R+C+ +
Sbjct: 204 PKKEIGRAYKNLEKFLTKAAHDNIQAVEGSGGIANRDVLEYRGTQSTKPEDLCGRYCNMV 263
Query: 221 GMNNQAVKAAQEAVQK 236
G+N + A+ +K
Sbjct: 264 GLNFRVESIAKALAKK 279
>gi|448456468|ref|ZP_21595237.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811944|gb|EMA61941.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 324
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L LE + ++ RF S+L ++ ++ A+ +
Sbjct: 207 SR-VEKAEIARTYRYVVRELKLEVKPA------DPEQYVPRFASDLELSEESEMRAKSLL 259
Query: 235 QKSEE 239
+ ++E
Sbjct: 260 RNAKE 264
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 20/235 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD + G+ +C+E G VLE +D+ EWR + E +N G N + D GLS
Sbjct: 11 KIVFDANRGEYICTETGEVLEDKVVDQGPEWRAYTEE--ENRERSRAGTINLAVHDMGLS 68
Query: 74 TVIAKPNGASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRAN 130
T + A + L + Q R G++ R L+ A + + D LGL +K+ A
Sbjct: 69 TYM--DTRAKDRIKAMRLRKLQIRSRVGTSEQRNLVKAMTILERIIDNLGLPKAVKEEAA 126
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY+K ++K +GR+ + ++AA +Y ACR+ + P T+ EI S A A KKEIG+A +
Sbjct: 127 IIYRKALEKKLIKGRSIEEVVAASVYAACRKMNIPTTLDEI-SKATSANKKEIGKAYRLL 185
Query: 191 VKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+++ ++ + A D ++ + S LG++ + + AA E V+++++ I
Sbjct: 186 LRE---------DVTEVPASDPKYYVMKIASLLGLSGKVMTAATEIVERAKKAGI 231
>gi|448445487|ref|ZP_21590385.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685011|gb|ELZ37373.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L L E+ ++ RF S+L ++ ++ A+ +
Sbjct: 207 SR-VEKAEIARTYRYVVRELKL------EVKPADPEQYVPRFASDLELSEESEMRAKSLL 259
Query: 235 QKSEE 239
+ ++E
Sbjct: 260 RNAKE 264
>gi|448680963|ref|ZP_21691109.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445768021|gb|EMA19108.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 339
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 121/248 (48%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ ++ V
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQANLPQTLDDMAVV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E RA Y+ ++L S+++G ++ +F S LG ++ + A+ +
Sbjct: 207 SR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFISELGADDALERQARALI 259
Query: 235 QKSEEFDI 242
+ +E ++
Sbjct: 260 EAGKEANV 267
>gi|326427942|gb|EGD73512.1| hypothetical protein PTSG_05216 [Salpingoeca sp. ATCC 50818]
Length = 370
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 114/226 (50%), Gaps = 17/226 (7%)
Query: 11 KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDN-DPVRVGGPTNPLL 67
KH VV D+ AGD VCSECGLV+ +D SEWR+F N + DN D RVG + LL
Sbjct: 29 KHAPVVEDYRAGDMVCSECGLVVGDRVVDVGSEWRSFGNSDKKKDNKDRSRVGLEEDVLL 88
Query: 68 -ADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
D GL T+ A PN + + RWQ+R S R L + IA ++ +L L
Sbjct: 89 EGDQGL-TISAIPNCPNADV---PWMRWQSRMGPSGSTRTLKSVYGKIANLASKLSLTDQ 144
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
+ A I+K+VE+ + + R+ D+ AA +YIACR R KEIC A+ T KEIG
Sbjct: 145 VVTTAKAIFKEVEETGAVKTRSHDSCAAASVYIACRNLGVSRPYKEICRAAD-KTPKEIG 203
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
R I + S + + + R+ S LG+ KAA
Sbjct: 204 RVYRKIRSAIKTAVKSS------NPAENLGRYISRLGLEFVVRKAA 243
>gi|448472540|ref|ZP_21601164.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819844|gb|EMA69678.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 323
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 29 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 85
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 86 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 146 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L LE + ++ RF S+L ++ ++ A+ +
Sbjct: 206 SR-VEKAEIARTYRYVVRELKLEVKPA------DPEQYVPRFASDLELSEESEMRAKSLL 258
Query: 235 QKSEE 239
+ ++E
Sbjct: 259 RNAKE 263
>gi|448468113|ref|ZP_21599744.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445810856|gb|EMA60870.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 324
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + GA L +W R D R L A I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ GL +++ A+ IY++ D+ GR+ + + +C+Y A R PR++ EI V
Sbjct: 147 MASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K EI R Y+V++L LE + ++ RF S+L ++ ++ A+ +
Sbjct: 207 SR-VEKAEIARTYRYVVRELKLEVKPA------DPEQYVPRFASDLELSEESEMRAKSLL 259
Query: 235 QKSEE 239
+ ++E
Sbjct: 260 RNAKE 264
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 19/235 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++ +D G+ VCS CG V++ + +DE EWR F + R G P ++ D GLS
Sbjct: 14 KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMTLMIHDKGLS 72
Query: 74 TVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
T I N +G + + L WQ R D R L A + M+ ++ L
Sbjct: 73 TDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLP 132
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+ EI +V+ TKKE
Sbjct: 133 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSK-VTKKE 191
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
IGR+ ++ + L L + + +++ RF L ++ + K A+E + ++
Sbjct: 192 IGRSYRFLARGLNLNLRPTSPI------EYVDRFGDALNVSARTKKRAKEILHEA 240
>gi|242091263|ref|XP_002441464.1| hypothetical protein SORBIDRAFT_09g027300 [Sorghum bicolor]
gi|241946749|gb|EES19894.1| hypothetical protein SORBIDRAFT_09g027300 [Sorghum bicolor]
Length = 286
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 16/163 (9%)
Query: 95 QNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS--------SRGRN 146
Q RG D+ + A+ IA M+ RLG+ A +DRA E++ ++E++K GR+
Sbjct: 71 QPRGG--DKAMSEAYGAIANMAARLGIAAGARDRAVEVFLRMEERKGKAHHYYTKGAGRS 128
Query: 147 QDALLAACLYIACRQEDKPRTVKEICSVA--NGATKKEIGRAKEYIVKQLGLETG---QS 201
DAL AACLY+ACR+ PRT KE+ + A +K+IG+ I K+LG E G
Sbjct: 129 GDALYAACLYVACRRAGAPRTFKELAAATRDGPAARKDIGKLIALIRKRLGDEAGGGEAM 188
Query: 202 VEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK-SEEFDIR 243
+++G + A D++ RF S LGM V+A QEA ++ ++ D+R
Sbjct: 189 MDIGVVRAADYVARFGSQLGMEAGEVRAVQEAARRMQDQLDVR 231
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 19/235 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++ +D G+ VCS CG V++ + +DE EWR F + R G P ++ D GLS
Sbjct: 9 KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMTLMIHDKGLS 67
Query: 74 TVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLV 122
T I N +G + + L WQ R D R L A + M+ ++ L
Sbjct: 68 TDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLP 127
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+ EI +V+ TKKE
Sbjct: 128 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSK-VTKKE 186
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
IGR+ ++ + L L + + +++ RF L ++ + K A+E ++++
Sbjct: 187 IGRSYRFLARGLNLNLRPTSPI------EYVDRFGDALNVSARTKKRAKEILREA 235
>gi|448732993|ref|ZP_21715239.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445803326|gb|EMA53623.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 351
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 118/241 (48%), Gaps = 21/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E D G+ C+ECGLV++ ID +EW + E + RVG P P
Sbjct: 54 CPECGGRLE--HDPEHGERACTECGLVVDEDEIDLGAEWTAHSAEE-QQERSRVGSPVTP 110
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSN---PDRGLILAFKTIAT 114
+ D GLST I + A G LS+ R W +R +R L I
Sbjct: 111 TMHDKGLSTEIDWRDQDARGNPLSTRQRRKMQRLRTWHSRSQTDGTQERNLRHGLGEIDR 170
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL A+I++ A+ IY++V D+ GR+ +++ AA LY A RQ R++ I +V
Sbjct: 171 MASALGLPASIRETASVIYRRVIDENLLIGRSVESVSAAALYAATRQSTSARSLDGIVTV 230
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A K+ IGR YI ++LGL E+ D + R CS L ++ + + ++E +
Sbjct: 231 AR-MDKQSIGRTYRYISRELGL------EIEPPDPTDHLPRLCSVLDLSTEIEQQSRELL 283
Query: 235 Q 235
+
Sbjct: 284 E 284
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 21/250 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D +TVC++CGLV+ ID EWR F + + ++ RVG PT
Sbjct: 33 AHCPECNGR--LVADDEHAETVCADCGLVVAESEIDRGPEWRAF-DAAERDEKSRVGAPT 89
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQTLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEI 149
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++ EI
Sbjct: 150 DRMASALGLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQAGTPRSLDEIS 209
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+V+ K E+ R Y+V++LGL E+ ++ RF S+L + ++ A++
Sbjct: 210 AVSR-VDKAEVARTYRYVVRELGL------EVQPADPESYVPRFASDLDLADETELRARD 262
Query: 233 AVQKSEEFDI 242
+ ++E I
Sbjct: 263 LLTTAKEKGI 272
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 21/250 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D +TVC++CGLV+ ID EWR F + + ++ RVG PT
Sbjct: 33 AHCPECNGR--LVADDEHAETVCADCGLVVAESEIDRGPEWRAF-DAAERDEKSRVGAPT 89
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEI 149
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++ EI
Sbjct: 150 DRMASALGLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQAGTPRSLDEIS 209
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+V+ K E+ R Y+V++LGL E+ ++ RF S+L + ++ A++
Sbjct: 210 AVSR-VDKAEVARTYRYVVRELGL------EVQPADPESYVPRFASDLDLADETELRARD 262
Query: 233 AVQKSEEFDI 242
+ ++E I
Sbjct: 263 LLTTAKEKGI 272
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 15/204 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F + D + RVG PT
Sbjct: 24 CPECG--GKLAADTEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 81 MMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + A +Y A RQ PR++ E+ V
Sbjct: 141 MASALGLPDNVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEVAGV 200
Query: 175 ANGATKKEIGRAKEYIVKQLGLET 198
+ K EI R Y+V++LGLE
Sbjct: 201 SR-VEKSEIARTYRYVVRELGLEV 223
>gi|348673371|gb|EGZ13190.1| hypothetical protein PHYSODRAFT_361176 [Phytophthora sojae]
Length = 308
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 16/245 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C +C +VV D SAGD VC CG++L ID++ EWRTFAN+ DP RVG
Sbjct: 10 CRECG-SADVVTDFSAGDVVCRSCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGDV 68
Query: 63 TNPLLADGGLSTVIAKPN----GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
+ L LST + GA GE + S R + I ++D
Sbjct: 69 ADARLNSLSLSTYLVDTKKSGGGADGEPGHKHKRPNISSDSAKVRRMQRNMARIQEVADY 128
Query: 119 LGLVATIKDRANEIYKKVEDQK-SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG 177
L L I + A ++Y + E Q + RG ++++ A L+IACR+ R++KE A+G
Sbjct: 129 LSLPKNIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLKEF-EEASG 187
Query: 178 ATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
K+ IG++ + ++L LE Q+ ++++RFCS LG+ N+ A +K+
Sbjct: 188 VPKRRIGKSFMSLQRRLDLEVKQA------STEEYVQRFCSRLGLPNKTQMIAHAVAKKA 241
Query: 238 EEFDI 242
+ ++
Sbjct: 242 DSLEL 246
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 14/201 (6%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLA 68
C K ++V D +G+ VCS+CGLV + +EWR F +ES N RVG P++
Sbjct: 2 CGKDQQLVTDLESGEIVCSKCGLVSSDRVQESRAEWRIFNSES--NGRSRVGSPSSLAYH 59
Query: 69 DGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSD 117
D GL+TVI K N +SG L S L W R S R L+ AF + + D
Sbjct: 60 DMGLATVIGKENRDSSGHQLEPSMNASIQRLRTWDFRSQAHSPTKRNLMHAFSELGRLKD 119
Query: 118 RLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG 177
+LGL I ++ +Y+K ++ RGR+ ++LAA +Y +CR+ RT+K++ A
Sbjct: 120 KLGLSDAIMEKTAYLYRKAHEKHLVRGRSTSSILAAAIYASCRELGASRTLKDVAK-ATD 178
Query: 178 ATKKEIGRAKEYIVKQLGLET 198
+K I R+ +V +L ++
Sbjct: 179 IKRKAISRSYRILVLELDIKV 199
>gi|71030250|ref|XP_764767.1| transcription initiation factor TFIIB [Theileria parva strain
Muguga]
gi|68351723|gb|EAN32484.1| transcription initiation factor TFIIB, putative [Theileria parva]
Length = 342
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 108/238 (45%), Gaps = 19/238 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES---GDNDPVRVGGP 62
CS CK + VV DH G+ +C CG VLE+ I E EWR F ES + RVG
Sbjct: 15 CSTCKDSSTVVVDHVEGNQLCLSCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRVG-E 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRL 119
N + DG ST G S + + QN +N DR L +F + T++D L
Sbjct: 74 LNDVWLDGTSSTTFI---GGSKK-----MQHLQNLMTNYDSSDRALKTSFTLLRTIADSL 125
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
+ + +RA EI K++ R R A LY+ACR+ R+++E+ T
Sbjct: 126 NIRDQVVERAKEILKELNQMGHLRSRANSLNTLAVLYLACRESSVSRSLRELVIYDRSLT 185
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KE+GRA + K L E M RFCS L ++N+ + + QKS
Sbjct: 186 VKELGRAINRLKKVLPNRGNAPTE----DVSQLMPRFCSRLNLSNEIMTTCEAVAQKS 239
>gi|448513858|ref|ZP_21616789.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448526632|ref|ZP_21619901.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445693011|gb|ELZ45174.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445698859|gb|ELZ50897.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 337
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 58 CPECGGRTRA----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 111
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 112 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 171
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV E+C+ A AT+
Sbjct: 172 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAK-ATE 230
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL S +++ RF S+LG + + A E +++ E
Sbjct: 231 DEHRAAFDAMNRELGLPIAPS------GPAEYLPRFASDLGCDPAVERRAGELAERAVEE 284
Query: 241 DI 242
I
Sbjct: 285 GI 286
>gi|448482845|ref|ZP_21605616.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821131|gb|EMA70927.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 331
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 52 CPECGGRTRA----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 105
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 106 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 165
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV E+C+ A AT+
Sbjct: 166 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAK-ATE 224
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL S +++ RF S+LG + + A E +++ E
Sbjct: 225 DEHRAAFDAMNRELGLPIAPS------GPAEYLPRFASDLGCDPAVERRAGELAERAVEE 278
Query: 241 DI 242
I
Sbjct: 279 GI 280
>gi|448427470|ref|ZP_21583785.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445678157|gb|ELZ30651.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 343
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 64 CPECGGRTRA----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 117
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 118 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 177
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV E+C+ A AT+
Sbjct: 178 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAK-ATE 236
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL S +++ RF S+LG + + A E +++ E
Sbjct: 237 DEHRAAFDAMNRELGLPIAPS------GPAEYLPRFASDLGCDPAVERRAGELAERAVEE 290
Query: 241 DI 242
I
Sbjct: 291 GI 292
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K + D + G+ CS+CG V E EWR F+ + GDN R G PT+
Sbjct: 11 CQRCNKGV-FLTDSNTGEMFCSKCGFVATDRIEQEGPEWRAFSKDEGDNR-TRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIAT 114
+ D GL+T+I N A+G+ LS+S L W NR DR AF +
Sbjct: 69 AMHDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELDR 128
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ +L L + ++ IY+K D+ RGR+ L+AA LY ACR + PRT+ ++ +
Sbjct: 129 LKTKLALSDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLTDVSNG 188
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
N +K+I R ++++L L +M ++ + R S G++ + + A E +
Sbjct: 189 IN-IKRKDIARCYRLLLRELDL------KMPVVNPIKCVSRISSIAGLSEKTKRKAVEIL 241
Query: 235 QKSEEFDI 242
++ + ++
Sbjct: 242 DQAAKIEL 249
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 23/222 (10%)
Query: 26 CSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGASG 84
C +CGL+LE ID +WR F ++ RVG PT + D GL+T I K A G
Sbjct: 46 CEDCGLLLEEKRIDHGPDWRAFTHQEQQKKS-RVGAPTTRTMHDKGLTTSIDWKNKDAHG 104
Query: 85 EFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYK 134
LS+ L +WQ R D R L A M+ LG+ ++++ A+ +Y+
Sbjct: 105 RSLSADKRSQMNRLRKWQTRIRTSDAGERNLQFALSETDRMASGLGIPRSVREVASVLYR 164
Query: 135 KVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 194
+ ++ +GR+ + + LY ACR E PR+++E+ V+ +KEIGR YI K+L
Sbjct: 165 RALERDLIQGRSIEGVATGTLYAACRLEGMPRSLEEVAMVSR-VDRKEIGRTYRYIAKEL 223
Query: 195 GLETGQSVEMGT--IHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
E+GT + ++ RFCS L ++ A E +
Sbjct: 224 --------ELGTKPVDPKQYVPRFCSELELSPTVQAKASEII 257
>gi|448451292|ref|ZP_21592775.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445810726|gb|EMA60742.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 343
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 64 CPECGGRTRA----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 117
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 118 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 177
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV E+C+ A AT+
Sbjct: 178 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAK-ATE 236
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL S +++ RF S+LG + + A E +++ E
Sbjct: 237 DEHRAAFDAMNRELGLPIAPS------GPAEYLPRFASDLGCDPAVERRAGELAERAVEE 290
Query: 241 DI 242
I
Sbjct: 291 GI 292
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ G+ C +CG+V+E ID+ EWR F +E D R G P +
Sbjct: 9 CPECGS-IHLVKDYDRGELTCYDCGIVIEDSLIDQGPEWRAFDSEQ-DGKRSRTGSPMSF 66
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N G+ + + +W R + +R L LA + +
Sbjct: 67 LSHDKGLATEISWSNKDYYGKRIPHKNRSQIYRVRKWHQRIRVSNAAERNLALALQVLNE 126
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+LG+ IK+ A IY+K ++ RGR+ ++++ A +Y +CR + PRT+ EI V
Sbjct: 127 DGAKLGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMINIPRTLDEISKV 186
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ KK+IG+A ++ K+L L + ++ +FC+ L ++ Q + ++ +
Sbjct: 187 SE-VNKKKIGKAYRHLAKELALNLQPTTPYS------YVSQFCNKLDLDKQVIMDSEHII 239
Query: 235 Q 235
+
Sbjct: 240 R 240
>gi|448457245|ref|ZP_21595740.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445810826|gb|EMA60841.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 330
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 22/240 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 51 CPECGGRTRV----DSAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 104
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 105 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 164
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +D+ RGR+ + AAC+Y+ACR D RTV+EIC A AT
Sbjct: 165 LPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTADVARTVEEICGEAK-ATV 223
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL----GMNNQAVKAAQEAVQK 236
E A + + ++LGL + +++ RF S+L G+ +A + A+ AV++
Sbjct: 224 DEHQAAFDAMNRELGL------PIAPTGPAEYLPRFASDLDCDAGVERRAGELAERAVEE 277
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 15/203 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K ++V D + G+ C+ CG V+ D +EWR+F+ + + R G T+
Sbjct: 38 CPSCGKQ-KIVTDENQGELFCATCGFVITDKLEDMGAEWRSFSGD--ETSRSRSGAGTSL 94
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N +G+ LS+S L W +R S+ DR L A +
Sbjct: 95 AMHDMGLSTVIGSANKDTTGKPLSASMRTSIERLRTWDSRTQAHSSADRNLRQALNEMDK 154
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M D+L L + ++A IY+K ++K RGR+ L+AACLY ACR + PRT+ +I
Sbjct: 155 MKDKLALADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDIAKG 214
Query: 175 ANGATKKEIGRAKEYIVKQLGLE 197
N +K++ R I ++L L+
Sbjct: 215 IN-IRRKDVARCYRLIFRELELK 236
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 30/229 (13%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 39 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 97
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A G +S+ L +WQ R D R L A I M+ L
Sbjct: 98 DAYGRSISAKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALV---------- 147
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ ++ RGR+ + + A LY ACR+E PR+++EI V+ +KEIGR YI
Sbjct: 148 -IYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 205
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL EM + ++ RF S L ++ + A E ++ + E
Sbjct: 206 SQELGL------EMRPVDPKKYVPRFSSELDLSEEVQSKANEIIETTAE 248
>gi|322369726|ref|ZP_08044289.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
gi|320550644|gb|EFW92295.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
Length = 352
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 21/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+T C +CGL+ E ++D EWR+F E D + RVG PT
Sbjct: 59 CPECQGR--IVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPTTQ 115
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N ASG + + L W R D R L A I
Sbjct: 116 LMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQERNLKQALGEIQR 175
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LGL +++ A +Y++ + GR+ + + A LY A RQ+ PR + V
Sbjct: 176 MGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQHFPRPLTTFADV 235
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K I RA Y+ ++LGL ++ ++ +F S L ++++A + A+E +
Sbjct: 236 SR-VEKIRIQRAYRYLSRELGL------QIEPEDPSTYIPQFASTLEISDEAERTARELL 288
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D G+ VC +CG+V+ES +ID EWR F D + RVG PT
Sbjct: 31 CPECGGT--VTTDDGRGERVCEQCGIVVESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
LL D GLST I + ASG LSSS L W R + DR L A I
Sbjct: 88 LLHDEGLSTSIGWADKDASGRTLSSSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ D+ GR+ + + A LY A RQ PR++ E +
Sbjct: 148 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEFEPI 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHA--GDFMRRFCS 218
+ +++ RA Y+ +QL E+G A +++ RF S
Sbjct: 208 SR-VRRQKYARAYRYLARQL--------ELGIAPADPAEYLPRFTS 244
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 113/210 (53%), Gaps = 19/210 (9%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T C C K +++ D++ G+ CS CG V+ I+ EWR+F+N+ D RVG
Sbjct: 6 ITKQRCPSCTK-AKMILDNNTGELFCSFCGFVMPEKLIEGGPEWRSFSNDGTDRS--RVG 62
Query: 61 GPTNPLLADGGLSTVIAKPNG-ASGEFLSSSLGR-------WQNRG---SNPDRGLILAF 109
T+ + D GLST+I + N A+G+ L SS+ + W +R S+ +R L A
Sbjct: 63 AGTSITIHDMGLSTIIGQQNKDATGKPLDSSMKKSIERLRTWDSRSQAHSSAERNLRQAL 122
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
+ M +L L + ++A IY+K ++K +GR+ L+AAC+Y +CR + RT+
Sbjct: 123 SEMDKMKAKLSLTDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRNTETSRTLD 182
Query: 170 EICSVANGAT--KKEIGRAKEYIVKQLGLE 197
+I ANG +K++ R I ++L L+
Sbjct: 183 DI---ANGINIRRKDVARCYRLIFRELDLK 209
>gi|448445090|ref|ZP_21590145.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685396|gb|ELZ37750.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 348
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 19/208 (9%)
Query: 39 DETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGASGEFLSSS------- 90
D EWR F N S + RVG PT + D GL+T I K A G +SS
Sbjct: 57 DPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 115
Query: 91 LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
L +WQ R D R L A I M+ LG+ ++++ A+ IY++ ++ RGR+
Sbjct: 116 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSI 175
Query: 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTI 207
+ + A LY ACR+E PR+++EI V+ +KEIGR YI ++LGL EM +
Sbjct: 176 EGVSTAALYAACRKEGIPRSLEEISDVSR-VDRKEIGRTYRYISQELGL------EMRPV 228
Query: 208 HAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
++ RF S L ++ + A E ++
Sbjct: 229 DPKKYVPRFSSELELSEEVQSKANEIIE 256
>gi|330040447|ref|XP_003239917.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206843|gb|AEA39019.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 341
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 25/232 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CS C+ ++ D G+ +C +CGLV SH+ID +EWRTF+++ DP R+G ++P
Sbjct: 24 CSACQSEN-IIEDKKQGELICKDCGLVFASHTIDFNNEWRTFSSDQFKKDPSRIGSHSHP 82
Query: 66 LLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGSNPDRGLIL--AFKTIATMSDRLGLV 122
L+ + ST I+K G G FL+ L + NR + L F + + ++ L
Sbjct: 83 LI-ELNRSTGISK--GLKGFNFLNERLIKSHNRTNIEKVNYFLNKIFVKNSLIIEKAFLP 139
Query: 123 ATIKDRANEIYKKVEDQKS-----SRGRN------QDALLAACLYIACRQEDKPRTVKEI 171
IK + E++K D + SR RN ++LAA + I CR E PRT +EI
Sbjct: 140 KFIKQKVEELFKLYFDHLTMRSDGSRTRNFLKKKETTSILAALILICCRNEGIPRTFREI 199
Query: 172 CSVANGATKKEIGRAKEYIVKQL-GLETGQSVEMGTIHAGDFMRRFCSNLGM 222
+ +KKEIG I + L G+ + T ++ +F+ RFCS LG+
Sbjct: 200 SEITK-ISKKEIGLKVRAIQRSLRGIHFTK-----TKNSENFVSRFCSKLGL 245
>gi|448418757|ref|ZP_21579934.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
gi|445676151|gb|ELZ28675.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
Length = 352
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 21/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+T C +CGL+ E ++D EWR+F E D + RVG PT
Sbjct: 59 CPECQGR--IVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPTTQ 115
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N ASG + + L W R D R L A I
Sbjct: 116 LMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQERNLKQALGEIQR 175
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LGL +++ A +Y++ + GR+ + + A LY A RQ+ PR + +
Sbjct: 176 MGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQHFPRPLTTFADI 235
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K I RA Y+ ++LGL ++ ++ +F S L ++++A + A+E +
Sbjct: 236 SR-VEKIRIQRAYRYLSRELGL------QIEPEDPSTYIPQFASTLEISDEAERTARELL 288
>gi|448626518|ref|ZP_21671297.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445760130|gb|EMA11394.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 339
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ ++ V
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMAVV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E RA Y+ ++L S+++G ++ +F S L ++ + A+ +
Sbjct: 207 SR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFVSELDADDALERQARALI 259
Query: 235 QKSEEFDI 242
+ +E ++
Sbjct: 260 EAGKEANV 267
>gi|448684801|ref|ZP_21692888.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445782732|gb|EMA33573.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 339
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ ++ V
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMAVV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E RA Y+ ++L S+++G ++ +F S L ++ + A+ +
Sbjct: 207 SR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFVSELDADDALERQARALI 259
Query: 235 QKSEEFDI 242
+ +E ++
Sbjct: 260 EAGKEANV 267
>gi|448665373|ref|ZP_21684648.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445773054|gb|EMA24088.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 339
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ ++ V
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMAVV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E RA Y+ ++L S+++G ++ +F S L ++ + A+ +
Sbjct: 207 SR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFISELDADDALERQARALI 259
Query: 235 QKSEEFDI 242
+ +E ++
Sbjct: 260 EAGKEANV 267
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 115/239 (48%), Gaps = 23/239 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C +H G+TVC +CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 41 CPECDGRLATDTEH--GETVCEDCGLVVEEDSVDRGPEWRAF--NSGERDSKSRVGAPTT 96
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G+ LS R W R D R L A I
Sbjct: 97 NMMHDKGLSTNIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSKERNLKQALGEID 156
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++ E +
Sbjct: 157 RMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYAAARQVGNPRSLDEFTA 216
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ K E+ R Y++++LGL + ++ RF S L ++ + + A+E
Sbjct: 217 VSR-VEKMELTRTYRYVIRELGL------RVQPADPTSYVPRFASRLDLSEETERRARE 268
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 22/228 (9%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
S +T+C +CGLVL +ID EWR+F ++ + DP R G P D GLST I
Sbjct: 17 SGTETICEDCGLVLAEDAIDRGPEWRSFDDD--ETDPRRTGAPLTRSRHDRGLSTEIGYG 74
Query: 80 NGASGEFLS----------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIK 126
+G E+ S + L R NR S +R + F I ++ L L + +
Sbjct: 75 SGTPSEYRSRITGRKRRQIARLRREHNRARISSKAERNQVYGFTEIRRINTGLSLPDSAR 134
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
++A ++K + + +GR+ + AA +Y CR PRT+ EI +VA A + E+ A
Sbjct: 135 EQACTLFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTIDEITTVAR-ADRHELTAA 193
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + ++LGL TG I ++ R+ S LG+ + A+E +
Sbjct: 194 YDALNRELGLPTGP------IDPTGYLPRYASKLGLETAIERRAREHL 235
>gi|448307033|ref|ZP_21496934.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445596580|gb|ELY50665.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 298
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 23/223 (10%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+T+C +CGLVL +ID EWR+F + D DP R G P D GLST I +G+
Sbjct: 23 ETICEDCGLVLAEDAIDRGPEWRSFDD---DTDPRRTGAPLTRSRHDRGLSTKIGYGSGS 79
Query: 83 SGEFLSSSLGRWQ----------NRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRA 129
+ S GR + NR S +R + F I ++ L L + +++A
Sbjct: 80 DSTYSSRVTGRKRRQIARLRREHNRAQISSKAERNQVYGFTEIRRVNALLSLPESAREQA 139
Query: 130 NEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEY 189
++K + + +GR+ + AA +Y CR PRT+ EI +VA +T E+ A +
Sbjct: 140 CALFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTIDEITAVARAST-DELTTAYDA 198
Query: 190 IVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+ ++LGL TG I ++ R+ S LG++ + A+E
Sbjct: 199 LNRELGLPTGP------IDPTQYLPRYASKLGLDTAVERRARE 235
>gi|344212801|ref|YP_004797121.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343784156|gb|AEM58133.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 339
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCEACGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ ++ V
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMAVV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E RA Y+ ++L S+++G ++ +F S L ++ + A+ +
Sbjct: 207 SR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFISELDADDALERQARALI 259
Query: 235 QKSEEFDI 242
+ +E ++
Sbjct: 260 EAGKEANV 267
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 19/229 (8%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
GD + E GLV+E +ID EWR F ++S + RVG PT P + D GL+T I +
Sbjct: 46 GDLIHEETGLVVEEDNIDHGPEWRAF-DQSERDQKSRVGAPTTPAMHDKGLTTEIGWRDK 104
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRAN 130
A+G LS+ L WQ R D R L A I M LG +++ A+
Sbjct: 105 DANGHSLSNEKRKQMNRLRTWQQRIRTNDAGERNLQFALSEIDRMVSALGAPDNVQEMAS 164
Query: 131 EIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190
IY++ D+ RGR+ + + L+ A R E PRT++E+ VA +GRA ++
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIPRTLEEVSDVAR-VDHNRVGRAYRHL 223
Query: 191 VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++LGL E+ ++ R+CS L +++ + A E V + E
Sbjct: 224 SQELGL------EVSPTDPSQYVPRYCSALDVSSLVEQKATEIVADTTE 266
>gi|345004538|ref|YP_004807391.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344320164|gb|AEN05018.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 330
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 27/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H G+TVC +CGLV++ SID EWR F + D + RVG PT
Sbjct: 35 CPECSGSLATDTEH--GETVCQDCGLVVDEDSIDRGPEWRAFDSREKD-EKSRVGAPTTN 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+S L W R D R L A I
Sbjct: 92 MMHDKGLSTNIGWQDKDAYGNQLSASQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 151
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A+ IY++ + GR+ + + A LY A R+ PR++ EI +V
Sbjct: 152 MASALGLPESVRETASVIYRRALGEDLLPGRSIEGVSTAALYAAARKAGTPRSLDEISAV 211
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K EI R Y+V++L LE I D ++ RF S+LG++++A + A+
Sbjct: 212 SR-VEKDEIARTYRYVVRELKLE---------IQPADPEQYVPRFASDLGLSDEAERRAR 261
Query: 232 EAVQKSEEFDI 242
+ +Q ++E ++
Sbjct: 262 QLLQTAKEQEV 272
>gi|330926698|ref|XP_003301569.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
gi|311323527|gb|EFQ90325.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
Length = 357
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 38/262 (14%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK++ +V + SAGDT+C CG VL +ID G++DP R+G
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLAERTID---------THQGNDDPSRIGDAA 87
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDR---GLILAFKTIATMSDRLG 120
NPLL L T I +G L R N+ SN D+ L A+ I + D
Sbjct: 88 NPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYGQITALCDSQN 143
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
+ + A ++K +D K +G++QDA++A C++IACR+ D+ R+ +EI + N +K
Sbjct: 144 ISRPTAETAKMLFKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMTN-VSK 202
Query: 181 KEIGR---AKEYIVKQLGLETGQSVE-----MGTIH------------AGDFMRRFCSNL 220
KE+GR E +++ G S+ + T++ A M R C+ L
Sbjct: 203 KEVGRTFKVLEAFIQKSQNNGGPSIAGNGAVIDTVNLLNQKGGTTATSAASLMPRACAKL 262
Query: 221 GMNNQAVKAAQEAVQKSEEFDI 242
+ Q A+E + + +
Sbjct: 263 ALGTQVQMVAEECADQVAHYGV 284
>gi|448494476|ref|ZP_21609463.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445689311|gb|ELZ41551.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 336
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 18/237 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 57 CPECGGRTRV----DGAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ +G
Sbjct: 111 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVMG 170
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV E+C+ A AT+
Sbjct: 171 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAK-ATE 229
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
E A + + ++LGL S +++ RF S+L + + A E ++
Sbjct: 230 DEHRAAFDAMNRELGLPIAPS------GPAEYLPRFASDLDCDPAVERRAGELADRA 280
>gi|389846162|ref|YP_006348401.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616218|ref|ZP_21664928.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243468|gb|AFK18414.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750873|gb|EMA02310.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 326
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 39 DETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPNGASGEFLSSS------- 90
D EWR F N S RVG PT + D GL+T I K A G +SS
Sbjct: 64 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 122
Query: 91 LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
L +WQ R D R L A I M+ LG+ ++++ A+ IY++ ++ RGR+
Sbjct: 123 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSI 182
Query: 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTI 207
+ + + LY ACR+E PR+++EI V+ +KEIGR YI ++LGL EM +
Sbjct: 183 EGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYISQELGL------EMRPV 235
Query: 208 HAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S L ++ + A E ++ + E
Sbjct: 236 DPKKYVPRFSSELDLSKEVQSKANEIIETTAE 267
>gi|84995592|ref|XP_952518.1| transcription initiation factor tfiib [Theileria annulata strain
Ankara]
gi|65302679|emb|CAI74786.1| transcription initiation factor tfiib, putative [Theileria
annulata]
Length = 341
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 109/238 (45%), Gaps = 19/238 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES---GDNDPVRVGGP 62
C+ CK + VV DH G+ +C CG VLE+ I E EWR F ES + RVG
Sbjct: 15 CTTCKDSSTVVVDHVEGNQLCLNCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRVG-E 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRL 119
N + DG ST G S + + QN +N DR L +F + T++D L
Sbjct: 74 LNDVWLDGTSSTTFI---GGSKK-----MQHLQNLMTNYDSSDRALKTSFTLLRTIADSL 125
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
+ + +R+ EI K++ R R+ A LY+ACR+ R+++E+ T
Sbjct: 126 NMRDQVVERSKEILKELNQMGHLRSRSNSLNTLAVLYLACRESSVSRSLRELVIYDRSLT 185
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KE+GRA + K L E M RFCS L ++N+ + + QKS
Sbjct: 186 VKELGRAINRLKKVLPNRGNAPTE----DVSQLMPRFCSRLNLSNEFMTTCEAIAQKS 239
>gi|448366610|ref|ZP_21554733.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
aegyptia DSM 13077]
gi|445654065|gb|ELZ06921.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
aegyptia DSM 13077]
Length = 303
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 22/226 (9%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLVL ID EWR+FA++ D D R G P D GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFADD--DTDRRRTGAPLTRSRHDRGLSTKIGYG 77
Query: 80 NGASGEFLSSSLGRWQNRGSNPDR-------------GLILAFKTIATMSDRLGLVATIK 126
+ + + GR + + S R +L F I ++ RL L ++
Sbjct: 78 TDSVSDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSLPDCLR 137
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
++A ++ + + +GR+ + AAC+Y +CR PRT+ E+ ++A AT+ E+ A
Sbjct: 138 EQACALFDSAQSENLLQGRSIEGFAAACVYASCRVRSLPRTIDEVVTIA-AATEAELKAA 196
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+ + + LGL TG I G ++ RF SNL ++ + A+E
Sbjct: 197 YDALNRDLGLPTGP------IDPGQYLPRFASNLDLDTAVERRARE 236
>gi|448582204|ref|ZP_21645708.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448604362|ref|ZP_21657614.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448624090|ref|ZP_21670163.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445731852|gb|ELZ83435.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445744522|gb|ELZ95998.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445750057|gb|EMA01496.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 296
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 39 DETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPNGASGEFLSSS------- 90
D EWR F N S RVG PT + D GL+T I K A G +SS
Sbjct: 34 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 92
Query: 91 LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
L +WQ R D R L A I M+ LG+ ++++ A+ IY++ + RGR+
Sbjct: 93 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSI 152
Query: 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTI 207
+ + + LY ACR+E PR+++EI V+ +KEIGR YI ++LGL EM +
Sbjct: 153 EGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYISQELGL------EMRPV 205
Query: 208 HAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S L ++ + A E ++ + E
Sbjct: 206 DPKKYVPRFSSELDLSKEVQSKANEIIETTAE 237
>gi|448532924|ref|ZP_21621344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445706158|gb|ELZ58043.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 339
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC +CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 60 CPECGGRTRV----EGAERVCGDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 113
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 114 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 173
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV E+C A AT+
Sbjct: 174 LPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCDEAK-ATE 232
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL + +++ RF S+LG + + A E ++ E
Sbjct: 233 DEHQAAFDAMNRELGL------PIAPAGPSEYLPRFASDLGCDPAVERRAGELADRAVEE 286
Query: 241 DI 242
I
Sbjct: 287 GI 288
>gi|448613430|ref|ZP_21663310.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740327|gb|ELZ91833.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 326
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 39 DETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGASGEFLSSS------- 90
D EWR F N S RVG PT + D GL+T I K A G +SS
Sbjct: 64 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 122
Query: 91 LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
L +WQ R D R L A I M+ LG+ ++++ A+ IY++ ++ RGR+
Sbjct: 123 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSI 182
Query: 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTI 207
+ + + LY ACR+E PR+++EI V+ +KEIGR YI ++LGL EM +
Sbjct: 183 EGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYISQELGL------EMRPV 235
Query: 208 HAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S L ++ + A E ++ + E
Sbjct: 236 DPKKYVPRFSSELDLSKEVQSKANEIIETTAE 267
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 27/253 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D G+ C+ECGLVL++ +D EWR +E D + RVG P
Sbjct: 35 ATCPECSGR--IVHDAEHGEHACAECGLVLDADELDYGPEWRAGDDEDAD-ERRRVGAPL 91
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
D GLST I N A G LS+ L W R + +R L AF +
Sbjct: 92 TERRHDKGLSTTIGWRNQDAYGNELSARKRSQLRRLRTWNERFTAKTAQERNLKHAFGEL 151
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ L L ++ A +Y++ D++ GR+ +A+ ACLY A RQ PRT
Sbjct: 152 ERMASALDLPEPCRETAAVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRTWATFE 211
Query: 173 SVANGATKKEIG---RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
SV ++ EIG RA Y+ ++LGLE + + ++ +F S L ++++A
Sbjct: 212 SV----SRVEIGRVQRAYRYLSRELGLEIAPADPL------QYLGQFASALSISDEAEHV 261
Query: 230 AQEAVQKSEEFDI 242
A+E ++ ++E I
Sbjct: 262 AREILETAKEKGI 274
>gi|448292886|ref|ZP_21483207.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543300|ref|ZP_21624869.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550186|ref|ZP_21628709.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559542|ref|ZP_21633616.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572791|ref|ZP_21640552.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448597013|ref|ZP_21654151.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445571861|gb|ELY26404.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706844|gb|ELZ58717.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710932|gb|ELZ62727.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445711961|gb|ELZ63747.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445719563|gb|ELZ71242.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740894|gb|ELZ92399.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 296
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 39 DETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPNGASGEFLSSS------- 90
D EWR F N S RVG PT + D GL+T I K A G +SS
Sbjct: 34 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 92
Query: 91 LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
L +WQ R D R L A I M+ LG+ ++++ A+ IY++ + RGR+
Sbjct: 93 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSI 152
Query: 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTI 207
+ + + LY ACR+E PR+++EI V+ +KEIGR YI ++LGL EM +
Sbjct: 153 EGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYISQELGL------EMRPV 205
Query: 208 HAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S L ++ + A E ++ + E
Sbjct: 206 DPKKYVPRFSSELDLSKEVQSKANEIIETTAE 237
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 121/270 (44%), Gaps = 57/270 (21%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F + S + RVG PT
Sbjct: 28 CPECSG--QLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DASEKDSKSRVGAPTTN 84
Query: 66 LLADGGLSTVIA-------------------------------KPNGASGEFLSSS---- 90
++ D GLST I + A G+ LSS
Sbjct: 85 MMHDKGLSTNIGWQDKDAYGKSLSGAPTTNMMHDKGLSTNIGWQDKDAYGKSLSSRQREK 144
Query: 91 ---LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRG 144
L W R D R L A + M+ LGL +++ A+ IY++ D+ G
Sbjct: 145 MQRLRTWNERFRTRDSKERNLKQALGEVDRMASALGLPDNVRETASVIYRRALDEDLLPG 204
Query: 145 RNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEM 204
R+ + + A LY A RQ PR++ EI +V+ K EI R Y+V++L LE
Sbjct: 205 RSIEGVSTASLYAAARQAGTPRSLDEIAAVSR-VEKDEIARTYRYVVRELKLE------- 256
Query: 205 GTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
I D ++ RF S+LG++++A + A+
Sbjct: 257 --IQPADPESYVPRFASDLGLSDEAERRAR 284
>gi|119719600|ref|YP_920095.1| transcription initiation factor IIB [Thermofilum pendens Hrk 5]
gi|119524720|gb|ABL78092.1| Transcription initiation factor IIB (TFIIB) [Thermofilum pendens
Hrk 5]
Length = 327
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 19/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +++D + G+ +C+ CG V+ ID+ +EWR F E + RVG P +
Sbjct: 29 CPNCG-STRLIYDATRGEIICANCGYVMSEREIDQGAEWRAFTPEEREKRS-RVGAPISR 86
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATM 115
+ ++ + A+G +S L +WQ R S+ +R L A + +
Sbjct: 87 YGVESLVTDIDWGGRDAAGREISLRKRIEMLRLRKWQVRARAQSSMERNLAQAVIELERL 146
Query: 116 SDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 175
+LGL + DRA +IYK D RGR+ ++++AA +Y ACR+ PRT+ EI ++
Sbjct: 147 GAQLGLPKAVLDRALDIYKSALDSNLVRGRSIESVMAAAVYAACREMRLPRTLDEI-ALY 205
Query: 176 NGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
A +K++ R ++++ S+++ +A DF+ R S L ++ +K A E +
Sbjct: 206 TRAGRKDVARCYRLLLRE------ASLKVPLPNAADFVPRIGSLLRLSGATIKRAMEIID 259
Query: 236 KS 237
++
Sbjct: 260 QA 261
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 21/244 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C +V D +TVCS+CGLV+E+ ID EWR F + S + RVG P
Sbjct: 48 DHRCPECGG--SLVTDSEHAETVCSQCGLVVEADGIDHGPEWRAF-DASERDSKSRVGMP 104
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLS+ I + A G LSS L W R D R L A
Sbjct: 105 TTKMMHDKGLSSNIGWQDKDAYGRSLSSRQRQKMQRLRTWDERFRTRDSKERNLKQALGE 164
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PRT+ E+
Sbjct: 165 IDRMASALGLPKNVRETASVIYRRALNEDLLPGRSIEGVATASLYAAARQSGVPRTMDEV 224
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+V+ E R YIV++LGL + ++ RF S L + ++ + A
Sbjct: 225 TTVSR-IDGMEFKRTYRYIVRELGL------GVKPADPEQYLSRFESELDLTHETKRRAH 277
Query: 232 EAVQ 235
+ ++
Sbjct: 278 DLLK 281
>gi|162605828|ref|XP_001713429.1| transcription initiation factor IIB [Guillardia theta]
gi|13794361|gb|AAK39738.1|AF083031_95 transcription initiation factor IIB [Guillardia theta]
Length = 325
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 27/243 (11%)
Query: 6 CSDC--KKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C K+ E D+ GD +C CG ++ESH ID SEWR F++++ N+PVR+G P
Sbjct: 4 CINCGSKRFLE---DYKQGDIICKNCGFIIESHIIDFGSEWRIFSDDNRSNNPVRIGLPE 60
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRLGL 121
NPLL + ST+I+K S + ++ L + QN+ N ++ L F I+
Sbjct: 61 NPLLGNSS-STLISKGLKGSNK-INEKLLKAQNQNDNCKSEKYLASVFSIISFFLTNGSF 118
Query: 122 VATIKDRANEIYKKVED-----------QKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
IK++ E++K D + + R ++ +++AA ++I C+ E PR+ KE
Sbjct: 119 SKLIKEKVQELFKNYYDYLTLKSNGSRIKTTLRKKDTFSIIAASIFIICKNESIPRSFKE 178
Query: 171 ICSVANGATKKEIGRAKEYIVKQL-GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
I + KK+IG + K L G++ + + + +F+ RFCS LG+++ + K
Sbjct: 179 ISELT-KVKKKDIGNRVRIMEKALEGIKISKKRD-----SDNFISRFCSKLGLSSTSSKI 232
Query: 230 AQE 232
A++
Sbjct: 233 AEQ 235
>gi|55378764|ref|YP_136614.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637593|ref|ZP_21675831.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651893|ref|ZP_21680906.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55231489|gb|AAV46908.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764440|gb|EMA15595.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445769296|gb|EMA20370.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 339
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 21/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M LG+ + ++ A+ IY++ D+ GR+ + + A LY A RQ + P+T+ ++ V
Sbjct: 147 MGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMAVV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E RA Y+ ++L S+++G ++ +F S L ++ + A+ +
Sbjct: 207 SR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFVSKLDADDALERQARALI 259
Query: 235 QKSEEFDI 242
+ +E ++
Sbjct: 260 EAGKEANV 267
>gi|448739674|ref|ZP_21721686.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445799293|gb|EMA49674.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 355
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 21/248 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
++ C +C +V D + G+T C+ECGLV+ + ID EWR F + D R G
Sbjct: 51 SERVCPECGGR--LVEDETHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTGA 107
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLS+ I N A G LS+ L W R D R L A
Sbjct: 108 PTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 167
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LG+ +++ A+ IY++ + GR+ + + A LY RQ PR+V+E
Sbjct: 168 EIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEE 227
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ +V+ + E RA YI ++L L E+G + ++ RF S+L ++ + + A
Sbjct: 228 VGAVSR-VDEMEFKRAYRYINQELDL------EIGPPNPEQYVSRFASDLDVSEETERRA 280
Query: 231 QEAVQKSE 238
++ ++ +E
Sbjct: 281 RDLLETAE 288
>gi|292654896|ref|YP_003534793.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291372806|gb|ADE05033.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 326
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 39 DETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI-AKPNGASGEFLSSS------- 90
D EWR F N S RVG PT + D GL+T I K A G +SS
Sbjct: 64 DPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHR 122
Query: 91 LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQ 147
L +WQ R D R L A I M+ LG+ ++++ A+ IY++ + RGR+
Sbjct: 123 LRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALSEDLIRGRSI 182
Query: 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTI 207
+ + + LY ACR+E PR+++EI V+ +KEIGR YI ++LGL EM +
Sbjct: 183 EGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYISQELGL------EMRPV 235
Query: 208 HAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S L ++ + A E ++ + E
Sbjct: 236 DPKKYVPRFSSELDLSKEVQSKANEIIETTAE 267
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 21/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + ++ D G+TVCSECGLV+E S+D EWR F + D+ RVG PT
Sbjct: 39 CPECEGN--LITDTEHGETVCSECGLVVEQDSVDRGPEWRAFDSSERDSKS-RVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS + W R D R L A I
Sbjct: 96 MMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSKERNLKQALGEIDR 155
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++ EI +V
Sbjct: 156 MASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAGNPRSLDEISAV 215
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y++++L L E+ G ++ RF S LG++ + + A+E +
Sbjct: 216 SR-VDKMELTRTYRYVIRELKL------EIQPADPGSYVPRFVSRLGLSEETQRVARELL 268
>gi|345006049|ref|YP_004808902.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321675|gb|AEN06529.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + +TVC++CGLV+E +ID EWR F + D RVG PT ++ D GLST I
Sbjct: 33 DEAQAETVCNDCGLVVEEDAIDRGPEWRAFDSSEKDKKS-RVGAPTTKMMHDDGLSTNIG 91
Query: 78 KPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
N A G LS+S L W R D R L A I M+ LGL ++
Sbjct: 92 WQNKDAYGNSLSASQRQKMQRLRTWNERFRTRDHKERNLKQALGEIDRMASALGLPENVR 151
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A+ IY++ + GR+ + + A L+ A R + PR++ E+ +V+ + RA
Sbjct: 152 ETASVIYRRALAEDLLPGRSIEGIATASLHAAARMGNVPRSLDEMAAVSR-VDQATFKRA 210
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
YIV++L LE + + +++ RF S L ++++ A+E ++ ++ ++
Sbjct: 211 YRYIVRELSLEVQPADPL------EYLPRFASELELSDETEHRARELLETAKRQNV 260
>gi|448363880|ref|ZP_21552475.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
asiatica DSM 12278]
gi|445645464|gb|ELY98468.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
asiatica DSM 12278]
Length = 303
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 22/226 (9%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLVL ID EWR+FA++ D D R G P D GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFADD--DTDRRRTGAPLTRSRHDRGLSTQIGYG 77
Query: 80 NGASGEFLSSSLGRWQNRGSNPDR-------------GLILAFKTIATMSDRLGLVATIK 126
+ + + + GR + + S R +L F I ++ RL L ++
Sbjct: 78 SDSVSDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSLPDCLR 137
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
++A ++ + + +GR+ + AAC+Y +CR PRT+ E+ ++A AT+ E+ A
Sbjct: 138 EQACALFDSAQSENLLQGRSIEGFAAACVYASCRVRSLPRTIDEVVTIA-AATEAELKAA 196
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+ + + LGL TG I G ++ RF SNL ++ + A++
Sbjct: 197 YDALNRDLGLPTGP------IDPGQYLPRFASNLDLDTTVERRARD 236
>gi|409721273|ref|ZP_11269480.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448722199|ref|ZP_21704737.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445789910|gb|EMA40583.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 284
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
S +T C+ CGLV+ + +ID EWR+FA+ D R G P D GLST I +
Sbjct: 17 SGDETFCTSCGLVVAADNIDRGPEWRSFAD---GPDRKRTGAPLTRSRHDRGLSTEIGRS 73
Query: 80 NGASGE--FLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYK 134
+G L + L R NR S +R + AF I + LGL T++DRA +++
Sbjct: 74 IRLTGRKRRLFARLRRQHNRARIASKAERNRVYAFTEIRRLVGALGLPETVRDRACVLFE 133
Query: 135 KVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 194
+++ RGR+ + AA +Y CR E RT+ E+ A A++ E+ A + + ++L
Sbjct: 134 SAQNEDLLRGRSLEGFAAAAVYAVCRTEGLSRTIAEVRDAAK-ASRGELVAAYDALNREL 192
Query: 195 GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
GL TG I +++ RF S L ++ A E V ++E
Sbjct: 193 GLPTGP------IDPAEYLPRFASLLDVSTAVEARAHELVDEAESL 232
>gi|452206067|ref|YP_007486189.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082167|emb|CCQ35419.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 342
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 99/207 (47%), Gaps = 19/207 (9%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGAS 83
VC++CGLV+E ID EWR F D RVG P +L D GLST I A
Sbjct: 64 VCTDCGLVVEDQRIDAGPEWRAFDAAERDKRS-RVGAPMTEMLHDKGLSTTIGFDKTDAY 122
Query: 84 GEFL-------SSSLGRWQNRGSNP---DRGLILAFKTIATMSDRLGLVATIKDRANEIY 133
G L L W R DR L A I M+ LGL I++ A+ IY
Sbjct: 123 GNALGGRKRRQLKRLRTWNRRSKTENAHDRNLRHALGEIDRMASALGLPEPIRETASVIY 182
Query: 134 KKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193
++ D+ RGR+ + + AA LY A R + R++ EI +V+ EI RA YI ++
Sbjct: 183 RRALDEDLLRGRSIEGMAAASLYAASRLDGVARSIDEIATVSR-VDDLEIKRAYRYIDRE 241
Query: 194 LGLETGQSVEMGTIHAGDFMRRFCSNL 220
LGLET + H +++ RF S L
Sbjct: 242 LGLETPPA------HPNEYLGRFASEL 262
>gi|448419967|ref|ZP_21580777.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674135|gb|ELZ26680.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 348
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++ D G+TVC CGLV++ ++D EWR F ++ D RVG PT
Sbjct: 43 CPECGS-TDLATDEGRGETVCENCGLVVDEDAVDRGPEWRAFDSKEKDQKS-RVGAPTTN 100
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 101 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMKRLRTWNERFRTRDSKERNLKQALGEIDR 160
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ ++ IY++ + GR+ + + A L+ A R PR++ E+ V
Sbjct: 161 MASALGLPDNVRETSSVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVARV 220
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E RA YIV++L S+E+ +++ RF S++ + + + A+E +
Sbjct: 221 SR-VDEDEFERAYRYIVREL------SLEIKPADPVEYLPRFASDVEVPKETERTARELL 273
Query: 235 QKSEEFDI 242
+ ++ ++
Sbjct: 274 ENAKRENV 281
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 121/270 (44%), Gaps = 48/270 (17%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD----------- 53
C +C +V D +TVC++CGLV+E ID EWR F D
Sbjct: 29 HCPECGGR--LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTN 86
Query: 54 -----------------NDPVRVGGPTNPLLADGGLSTVIA-KPNGASGEFLSSS----- 90
++ RVG PT ++ D GLST I + A G LSS
Sbjct: 87 MMHDQGLSTNIGWQXEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKM 146
Query: 91 --LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGR 145
L W R D R L A I M+ LGL +++ A+ IY++ ++ GR
Sbjct: 147 QRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGR 206
Query: 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMG 205
+ + + A LY A RQ PR++ EI +V+ K E+ R YI+++LGLE +
Sbjct: 207 SIEGVATASLYAAARQAGTPRSLDEISAVSR-VEKMELTRTYRYIIRELGLEVKPA---- 261
Query: 206 TIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
++ RF S+L ++++ + A+E ++
Sbjct: 262 --DPEHYVPRFVSDLDLSDETERMARELLE 289
>gi|448350949|ref|ZP_21539759.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
taiwanensis DSM 12281]
gi|445635137|gb|ELY88308.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
taiwanensis DSM 12281]
Length = 303
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 22/226 (9%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLVL ID EWR+F ++ D D R G P D GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFVDD--DTDRRRTGAPLTRSRHDRGLSTQIGYG 77
Query: 80 NGASGEFLSSSLGRWQNRGSNPDR-------------GLILAFKTIATMSDRLGLVATIK 126
+ + + + GR + + S R +L F I ++ RL L ++
Sbjct: 78 SDSVPDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSLPDCLR 137
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
++A ++ + + +GR+ + AAC+Y +CR PRT+ E+ ++A AT+ E+ A
Sbjct: 138 EQACALFDSAQSENLLQGRSIEGFAAACVYTSCRVRSLPRTIDEVVTIA-AATEAELKAA 196
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+ + + LGL TG I G ++ RF SNL ++ + A+E
Sbjct: 197 YDALNRDLGLPTGP------IDPGQYLPRFASNLDLDTAVERRARE 236
>gi|308081538|ref|NP_001183266.1| uncharacterized protein LOC100501659 [Zea mays]
gi|238010416|gb|ACR36243.1| unknown [Zea mays]
gi|413946338|gb|AFW78987.1| hypothetical protein ZEAMMB73_751937 [Zea mays]
Length = 308
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 14/148 (9%)
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSR----------GRNQDALLAACLYIAC 159
+ IA M+ RLG+ A +DRA E++ ++E++K GR+ DAL AACLY+AC
Sbjct: 106 RAIADMAARLGIAAGARDRAVEVFMRMEERKGKSKSHHYYTKGAGRSGDALYAACLYVAC 165
Query: 160 RQEDKPRTVKEICSVAN--GATKKEIGRAKEYIVKQLGLET-GQSVEMGTIHAGDFMRRF 216
R PRT KE+ + A +K+IG+ I K+LG E G++++MG + A D++ RF
Sbjct: 166 RSAGAPRTFKELAAATRDGPAARKDIGKLIALIRKRLGDEAGGEAMDMGVVRAADYVERF 225
Query: 217 CSNLGMNNQAVKAAQEAVQKSEE-FDIR 243
S LG+ V+A QEA ++ ++ D+R
Sbjct: 226 GSLLGIGEGEVRAVQEAARRMQDHLDVR 253
>gi|313124866|ref|YP_004035130.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448287275|ref|ZP_21478488.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312291231|gb|ADQ65691.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445572483|gb|ELY27021.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 296
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 15/211 (7%)
Query: 19 HSAG-DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
H+ G +TVC +CGLV+ ++ID EWR+FA++ D +P R G P D GLST I
Sbjct: 24 HAEGQETVCGDCGLVVSEYTIDHGPEWRSFADD--DRNPKRTGAPLTQSRHDRGLSTEIG 81
Query: 78 KPNGASGEFLSSSLG--RWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEI 132
+ G + NR + +R + AF I ++ L L I+D A +
Sbjct: 82 RSTRVKGRKRRRLARMRKQHNRARISTKRERNQVYAFTEIRRLTSALSLPERIRDHACSL 141
Query: 133 YKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192
+K +++ RGR+ + AAC+Y ACR + RTV E+ + A AT+ E A + + +
Sbjct: 142 FKSAQNEDLLRGRSLEGFAAACVYAACRVANVSRTVGEVVAEAK-ATEAEQSAAYDALNR 200
Query: 193 QLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
LGL +G + +++ RF S L ++
Sbjct: 201 DLGL------PVGPVDPVEYVPRFASRLDLS 225
>gi|448434357|ref|ZP_21586167.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445685273|gb|ELZ37628.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 333
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 18/242 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC +CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 54 CPECGGRTRV----EGAERVCGDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 107
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLG 120
D GLST I + G NR + DR + A+ I ++ L
Sbjct: 108 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 167
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++D A ++ +++ RGR+ + AAC+Y+ACR D RTV E+C A A++
Sbjct: 168 LPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCDEAK-ASE 226
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
E A + + ++LGL + +++ RF S+LG + + A E ++ E
Sbjct: 227 DEHQAAFDAMNRELGL------PIAPAGPSEYLPRFASDLGCDPAVERRAGELADRAVEE 280
Query: 241 DI 242
I
Sbjct: 281 GI 282
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 19/238 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D G+ C CG V E R+F ++ G+ + R G T+ + D GLST
Sbjct: 20 LITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRGNKE--RTGVGTSLTIHDQGLST 77
Query: 75 VIAKPN-GASGEFLSSSLGR-------WQNRGSNP--DRGLILAFKTIATMSDRLGLVAT 124
VI N A+G+ LSSS+ + W +R N DR AF + + D+L L +
Sbjct: 78 VINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELYRLKDKLTLSDS 137
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
+ ++A IY+K ++K +GR AL+A+ LY ACR+ PRT+K+I N K+++
Sbjct: 138 VVEKAAYIYRKAINKKLVKGRTISALMASALYAACREVGTPRTLKDISDTTN-IKKRDLA 196
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+V +L L ++ +++ + R S +G++ + + A E ++K+EE +I
Sbjct: 197 ANYRLLVNELDL------KIPVVNSVHNVARIASKIGISEKTKRIATEILRKAEESEI 248
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
+A ++ ++G+ K A EI +K E+ + S G+N +L A LYI+CR+
Sbjct: 219 VARIASKIGISEKTKRIATEILRKAEESEISAGKNPMSLAATALYISCRK 268
>gi|448638606|ref|ZP_21676456.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445763385|gb|EMA14584.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 286
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 18/224 (8%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
++VC CGLV+ +ID EWR+F E D D R G P D GLST I +
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSF--EDDDTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 83 SG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKK 135
G +F + L R NR S +R + AF I + + L I+DRA +++
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 136 VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195
+++ +GR + AA +Y CR E RTV E+C+VA AT+ E+ A + + ++LG
Sbjct: 137 AQNEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAK-ATQAELRAAYDALNRELG 195
Query: 196 LETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
L T G I +++ RF + L + + A++ V ++++
Sbjct: 196 LPT------GPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQD 233
>gi|55379386|ref|YP_137236.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448648697|ref|ZP_21679762.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55232111|gb|AAV47530.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445774441|gb|EMA25457.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 286
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 18/224 (8%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
++VC CGLV+ +ID EWR+F E D D R G P D GLST I +
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSF--EDDDTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 83 SG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKK 135
G +F + L R NR S +R + AF I + + L I+DRA +++
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 136 VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195
+++ +GR + AA +Y CR E RTV E+C+VA AT+ E+ A + + ++LG
Sbjct: 137 AQNEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAK-ATQAELRAAYDALNRELG 195
Query: 196 LETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
L T G I +++ RF + L + + A++ V ++++
Sbjct: 196 LPT------GPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQD 233
>gi|321260170|ref|XP_003194805.1| transcription initiation factor IIB [Cryptococcus gattii WM276]
gi|317461277|gb|ADV23018.1| Transcription initiation factor IIB, putative [Cryptococcus gattii
WM276]
Length = 438
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 34/255 (13%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD +L +D SEWRTFA + +DP RVG
Sbjct: 76 ICPNCRTDPPNIVEEYAKGD--------LLGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 127
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---------LILAFKTIAT 114
NPLL L T+I+ +G +G ++ L R Q R + G L F I
Sbjct: 128 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 185
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
D + L +++RA +YK V++ ++ +G+N+ A++AAC+ ACR RT +E+C
Sbjct: 186 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 244
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD--------FMRRFCSNLGMNNQA 226
A +KKE+G+ ++ + + Q M ++H + + RF + L + N
Sbjct: 245 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDLGNAV 303
Query: 227 VKAAQ----EAVQKS 237
++ EAV KS
Sbjct: 304 FNVSKHIAGEAVAKS 318
>gi|242780523|ref|XP_002479613.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
gi|218719760|gb|EED19179.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
Length = 328
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 117/242 (48%), Gaps = 39/242 (16%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 24 ICPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRLGL 121
N LL L T IA GA+G + L R QN+ S+ ++ L+ A+K I + D +
Sbjct: 84 NILLNGNQLETSIA--GGATGA--ARQLYRAQNKLSSEKNNKALMAAYKEIGALCDGFNI 139
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+ D A ++K V+D K+ +G++QDA PRT EI +V ++K
Sbjct: 140 QKIVADTAKYLFKIVDDHKAFKGKSQDA---------------PRTFSEIFAVTK-VSRK 183
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTI-------------HAGDFMRRFCSNLGMNNQAVK 228
EIGR + + K T Q++E I D RF + LG++ +
Sbjct: 184 EIGRIYKSLEKFF---TAQNIERTAIVGSDAGFKQTTSTKPSDLCERFGTFLGLDYRTWN 240
Query: 229 AA 230
AA
Sbjct: 241 AA 242
>gi|401403652|ref|XP_003881529.1| At4g37010, related [Neospora caninum Liverpool]
gi|325115942|emb|CBZ51496.1| At4g37010, related [Neospora caninum Liverpool]
Length = 455
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 120/262 (45%), Gaps = 31/262 (11%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-----GDNDPVR 58
+C + + +VFD S+GD +C ECGL++E + E EWR F+ E+ G D R
Sbjct: 110 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 169
Query: 59 VGGPTNPLLADGGLST--VIAKPNGASG--------------EFLSSSLGRWQNRGSNPD 102
VG + L DGG+ T ++A G E +S LG G D
Sbjct: 170 VGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGTGVGSG---D 226
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKV-EDQKSSRGRNQDALLAACLYIACRQ 161
R L +AF I + + L + +RA EI K + +D R R+ + A +Y+ACR+
Sbjct: 227 RQLKVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGAQLRTRSNATTMLAIIYLACRE 286
Query: 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG-QSVEMGTIHAGDFMRRFCSNL 220
RTVKE+ ++KE+G+A I K L G S E T + R+CS L
Sbjct: 287 AGVTRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVSSAESAT----QLLPRYCSRL 342
Query: 221 GMNNQAVKAAQEAVQKSEEFDI 242
++ A+ +++ + I
Sbjct: 343 QLSMHVADVAEHVAKRATQVII 364
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 21/250 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+ CSECGLV++ ID EWR + N+ RVG PT
Sbjct: 26 CPECDGR--LTHDSEHGERACSECGLVVDEDEIDHGPEWRAHTQKER-NEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR--GSNP-DRGLILAFKTIAT 114
L+ D GLST I+ + A G LSS L W R NP +R L A I
Sbjct: 83 LMHDKGLSTKISWQDKDAYGNTLSSQKRQQMQRLRTWDERFRTRNPKERSLKQALSEIER 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
MS LGL ++++ A IY++ ++ GR+ + + A L+IA RQ + PR++ + V
Sbjct: 143 MSSALGLPKSVRETAGVIYRRALEENLLPGRSVEGVSTAALHIASRQANIPRSLDTLTEV 202
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K I R +Y+ ++L + + +++ RF S L +++ + ++E +
Sbjct: 203 SRIG-KLPITRTYQYVAREL------EINLPPADPLEYLPRFVSALDRSDEVERRSRELL 255
Query: 235 QKSEEFDIRY 244
+ E + Y
Sbjct: 256 ETVSEDEPSY 265
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 20/239 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C T ++FD G+ VC+ CGLV+E + D EWR F + N R G P
Sbjct: 83 VCPSCG-STALIFDSERGELVCNNCGLVIEENVTDTGPEWRAF-DADQRNSRARTGAPMK 140
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIA 113
+ GL T I N G + S + +W R S + +R ++A +
Sbjct: 141 YTRPNKGLVTEIDLYNKDIRGVRIPSKRQAQLYRMRKWHKRASIASSSERNYLIALPELN 200
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+S LGL I++ A +Y+K RGR + ++ A +Y ACR+ PRT+ EI +
Sbjct: 201 RVSSYLGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIAT 260
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
++ G KKEIGRA I +LGL+ + + ++ R+ + L ++ +A + A E
Sbjct: 261 IS-GLPKKEIGRAYRAISHELGLKIPLTDPIA------YVPRYVNALKLSGEAQEKAVE 312
>gi|15230282|ref|NP_191296.1| cyclin family protein [Arabidopsis thaliana]
gi|6735316|emb|CAB68143.1| putative protein [Arabidopsis thaliana]
gi|39545882|gb|AAR28004.1| TFIIB4 [Arabidopsis thaliana]
gi|332646126|gb|AEE79647.1| cyclin family protein [Arabidopsis thaliana]
Length = 360
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 120/270 (44%), Gaps = 70/270 (25%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK+ VV DH T C CGL + I + S +ND VR+ PTN
Sbjct: 9 CRRCKQ-INVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLADGGLSTVI-------------------AKP-------------NGASGEFLS----- 88
LL++ LS V +KP NG+S +FLS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 89 --------------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKDR 128
S LG Q +P L+ +I +S+ L L ATIK +
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIKGQ 180
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188
ANEI+K VE +RG+ ++ L AAC+YIACR D RT++EI AN A+ +I
Sbjct: 181 ANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISETVG 238
Query: 189 YIVKQLGLETGQSVEMGTIHAGDFMRRFCS 218
+I ++ LE ++ M +I +F++RFCS
Sbjct: 239 FIAEK--LEINKNWYM-SIETANFIKRFCS 265
>gi|448726015|ref|ZP_21708442.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445797034|gb|EMA47518.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 334
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 21/248 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
++ C +C + D + G+T C+ECGLV+ + ID EWR F + D R G
Sbjct: 28 SERVCPECGGR--LAEDEAHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTGA 84
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLS+ I N A G LS+ L W R D R L A
Sbjct: 85 PTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 144
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LG+ +++ A+ IY++ + GR+ + + A LY RQ PR+V+E
Sbjct: 145 EIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEE 204
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ +V+ + E RA YI ++L L E+G + ++ RF S+L ++ + + A
Sbjct: 205 VGAVSR-VDEMEFKRAYRYINQELDL------EIGPPNPKQYVSRFASDLDVSEETERRA 257
Query: 231 QEAVQKSE 238
++ ++ +E
Sbjct: 258 RDLLETAE 265
>gi|448730615|ref|ZP_21712921.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
gi|445793284|gb|EMA43867.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
Length = 283
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V + +T C ECGLV+ + ID EWR+F E+ R G P
Sbjct: 7 CPECNGQLVAVDE----ETACDECGLVVAADEIDRGPEWRSFERETRK----RTGAPLTR 58
Query: 66 LLADGGLSTVIAKPNGASGE--FLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLG 120
D GLST I + +G L + L R +R S +R + AF I LG
Sbjct: 59 SRHDRGLSTEIGRSTRLTGRKRRLFARLRRQHSRSRIASKAERNKVYAFTEIRRQVCALG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++DRA +++ +D RGR+ + AA +Y CR + RT+ EI +VA A++
Sbjct: 119 LSDSVRDRACVLFESAQDADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAK-ASR 177
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
E+ A + + + LGL TG I +++ RF S LG+ + A+E V
Sbjct: 178 DELTAAYDALNRDLGLPTGP------IDPTEYLARFASQLGLPHGVEARARELV 225
>gi|385803942|ref|YP_005840342.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339729434|emb|CCC40691.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 27/248 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D + G+TVCS+CGLV++ +SID EWR F + D RVG PT
Sbjct: 51 CPECSGN--LIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQKS-RVGAPTTK 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI V
Sbjct: 168 MASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIERV 227
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ + E+ R Y+V++L LE I D ++ RF S+L +++++ + A+
Sbjct: 228 SR-VDRMELTRTYRYVVRELKLE---------IEPADPEQYVPRFASDLDLSDESERQAR 277
Query: 232 EAVQKSEE 239
E ++ ++E
Sbjct: 278 ELLRNAKE 285
>gi|91806596|gb|ABE66025.1| transcription factor IIB family protein [Arabidopsis thaliana]
Length = 362
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 120/270 (44%), Gaps = 70/270 (25%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK+ VV DH T C CGL + I + S +ND VR+ PTN
Sbjct: 9 CRRCKQ-INVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLADGGLSTVI-------------------AKP-------------NGASGEFLS----- 88
LL++ LS V +KP NG+S +FLS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 89 --------------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKDR 128
S LG Q +P L+ +I +S+ L L ATIK +
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIKGQ 180
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188
ANEI+K VE +RG+ ++ L AAC+YIACR D RT++EI AN A+ +I
Sbjct: 181 ANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISETVG 238
Query: 189 YIVKQLGLETGQSVEMGTIHAGDFMRRFCS 218
+I ++ LE ++ M +I +F++RFCS
Sbjct: 239 FIAEK--LEINKNWYM-SIETANFIKRFCS 265
>gi|452206486|ref|YP_007486608.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082586|emb|CCQ35847.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 337
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 21/242 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
++ C +C + D G+TVC+ECGLV+E ID EWR F + D RVG
Sbjct: 39 SELVCPECGGR--LTADSEHGETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGA 95
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLST I + A G L S L +W R D R L A
Sbjct: 96 PTTNMMHDKGLSTNIGWQDKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALG 155
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LGL +++ A+ IY++ D GR+ + + A LY A +Q PR++ E
Sbjct: 156 EIDRMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYAAAKQAGTPRSLDE 215
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ V+ K EI R Y+V++LGL E+ ++ RF S+L ++ +A + A
Sbjct: 216 VAGVSR-VEKSEIARTYRYVVRELGL------EIAPADPKSYVPRFASDLDLSEEAERRA 268
Query: 231 QE 232
++
Sbjct: 269 RQ 270
>gi|116831306|gb|ABK28606.1| unknown [Arabidopsis thaliana]
Length = 363
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 120/270 (44%), Gaps = 70/270 (25%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK+ VV DH T C CGL + I + S +ND VR+ PTN
Sbjct: 9 CRRCKQ-INVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLADGGLSTVI-------------------AKP-------------NGASGEFLS----- 88
LL++ LS V +KP NG+S +FLS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 89 --------------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKDR 128
S LG Q +P L+ +I +S+ L L ATIK +
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIKGQ 180
Query: 129 ANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188
ANEI+K VE +RG+ ++ L AAC+YIACR D RT++EI AN A+ +I
Sbjct: 181 ANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISETVG 238
Query: 189 YIVKQLGLETGQSVEMGTIHAGDFMRRFCS 218
+I ++ LE ++ M +I +F++RFCS
Sbjct: 239 FIAEK--LEINKNWYM-SIETANFIKRFCS 265
>gi|110668479|ref|YP_658290.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109626226|emb|CAJ52683.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 27/248 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D + G+TVCS+CGLV++ +SID EWR F + D RVG PT
Sbjct: 51 CPECSGN--LIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQKS-RVGAPTTK 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A+ IY++ D+ GR+ + + A LY A RQ PR++ EI V
Sbjct: 168 MASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIERV 227
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ + E+ R Y+V++L LE I D ++ RF S+L +++++ + A+
Sbjct: 228 SR-VDRMELTRTYRYVVRELKLE---------IEPADPEQYVPRFASDLDLSDESERQAR 277
Query: 232 EAVQKSEE 239
E ++ ++E
Sbjct: 278 ELLRNAKE 285
>gi|448407123|ref|ZP_21573550.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445676336|gb|ELZ28859.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 288
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 14/224 (6%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+TVC+ CGLV+ +ID EWR+F ++ + + R G P D GLST I +
Sbjct: 21 ETVCASCGLVVAEDNIDHGPEWRSFEDDETNRE--RTGAPLTRSRHDRGLSTEIGRSTRL 78
Query: 83 SGEFLSSSLGR--WQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVE 137
G NR GS +R + F I + LGL I+DRA +++ +
Sbjct: 79 KGRKRRRMARMRRQHNRTKIGSKAERNQVYGFTEIRRLVSALGLSDHIRDRACVLFESAQ 138
Query: 138 DQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197
D+ RGR+ + AA +Y CR + RT+ E+ + A A+K E+ A + + + LGL
Sbjct: 139 DEDLLRGRSLEGFAAATVYATCRTAEVSRTIDEVVADAR-ASKAELSAAYDALNRDLGLP 197
Query: 198 TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241
TG I +++ RF S+L + A+E V+++ E +
Sbjct: 198 TGP------IDPAEYLARFASDLDLPQGLEGRARELVERTRELN 235
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 29/244 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V D G+TVC++CGLV+E S+D EWR F + D+ RVG PT
Sbjct: 39 CPECEGN--LVTDTEHGETVCNDCGLVVEQDSVDRGPEWRAFDSSERDSKS-RVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLG-----------RWQNRGSNPDRGLILAFKTIA 113
++ D GLST I + A G+ LSS R++ R S DR L A I
Sbjct: 96 MMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-DRNLKQALGEID 154
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ+ PR++ E +
Sbjct: 155 RMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQDGNPRSLDEFTA 214
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAA 230
V+ K E+ R Y++++L LE I D ++ RF S L ++ + + A
Sbjct: 215 VSR-VDKMELTRTYRYVIRELKLE---------IQPADPESYVPRFVSRLDLSEETQRLA 264
Query: 231 QEAV 234
+E +
Sbjct: 265 RELL 268
>gi|345005621|ref|YP_004808474.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321247|gb|AEN06101.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 119/240 (49%), Gaps = 21/240 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G+T C ECGLVL+ SID EWRTF E D + RVG PT
Sbjct: 28 CPECDG--QVIRDDEHGETTCEECGLVLDDVSIDRGPEWRTFDGEEKD-EKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N A G+ +S+ L W R D R L AF I+
Sbjct: 85 LMHDKGLSTTIGWQNKDAYGQAVSNRKRARLQRLRTWDERFRTKDAHERNLKQAFGEISR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ L + ++ A +Y++ D+ GR+ + + A LY A RQ PR + E V
Sbjct: 145 MASALDMPEPARETAGVLYRRAVDEDLLPGRSIEGMATAALYAAARQHGTPRPLSEFAEV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K I RA Y+ ++L L+ + + +++ +F S L ++++A + A++ +
Sbjct: 205 SR-VEKIRIQRAYRYLSRELSLQIEPADPL------EYVPQFASALDVSDEATRQARDLL 257
>gi|448407770|ref|ZP_21573965.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445675020|gb|ELZ27555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 322
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 113/241 (46%), Gaps = 21/241 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C +C V D ++G+ C CGLV+E+ ID EWR F + G RVG P
Sbjct: 25 EASCPECDGR--VTRDEASGEATCDACGLVVETDEIDRGPEWRDFGGD-GREQKSRVGAP 81
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
L+ D GLST I N A G LS L W R D R L AF
Sbjct: 82 MTELMHDKGLSTNIGWQNEDAYGSPLSDRQRTRMERLRTWDERFRTKDAQERNLKQAFGE 141
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ L L ++++ A +Y++ ++ GR+ + + A LY A RQ PR V E
Sbjct: 142 IDRMASALALPDSVRETAGVLYRRAVEEGLLPGRSIEGMATASLYAATRQHGAPRRVTEF 201
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V ++K I RA Y+ +LGL ++E ++ +F S L ++++A + A
Sbjct: 202 ADVCR-VSQKRIERAYRYLKTELGL----AIE--PEDPAKYVPQFASALDLSDEAERRAG 254
Query: 232 E 232
E
Sbjct: 255 E 255
>gi|383625085|ref|ZP_09949491.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448697538|ref|ZP_21698578.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445781491|gb|EMA32347.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 327
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 24/250 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D S G+ VC ECGLV+++ ID EWR+F +E GD RVG P
Sbjct: 29 CPECSGR--LRHDVSHGEHVCVECGLVVDADEIDHGPEWRSFDDE-GDAR-TRVGAPITE 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
D GLST I + A G LS+S L W R ++ D R L AF +
Sbjct: 85 RRHDKGLSTTIGWEDRDAYGNDLSASKRTRLRRLRTWNERFTSKDARERNLKHAFGELER 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++ A IY++ ++ GR+ +A+ A LY A RQ PRT SV
Sbjct: 145 MASALGLPDPCRETAAVIYRRAVEEDLLPGRSIEAMATASLYAAARQHGTPRTFVAFDSV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + + RA Y+ +L L E+ ++R F S+LG+ ++ + A+E +
Sbjct: 205 SR-VDDQPVKRAYRYLSGELDL------EIAPPDPEQYLRPFASDLGVTDETERLAREIL 257
Query: 235 Q--KSEEFDI 242
+ K+ E I
Sbjct: 258 EAAKAAELHI 267
>gi|448474119|ref|ZP_21602087.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445818399|gb|EMA68258.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 380
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 127/308 (41%), Gaps = 84/308 (27%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ ++V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECESK-DIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD--------------- 102
+ D GL+T I K A G LSS L +WQ R D
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 103 ---------------------RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKS 141
R L A I M+ LG+ ++++ A+ IY++ ++
Sbjct: 142 MASALRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDL 201
Query: 142 SRGRNQD-----ALLAAC-------------------------LYIACRQEDKPRTVKEI 171
RGR+ + AL AAC LY ACRQE PR++ E+
Sbjct: 202 IRGRSIEGVSTAALYAACRVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEV 261
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
V+ +KEIGR YI ++LGL E+ + F+ RF S L ++ + A
Sbjct: 262 ADVSR-VPQKEIGRTYRYISQELGL------ELKPVDPKQFVPRFASALQLSEEVQSKAT 314
Query: 232 EAVQKSEE 239
E + S E
Sbjct: 315 EIIDVSAE 322
>gi|448628519|ref|ZP_21672288.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445758050|gb|EMA09375.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 286
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 18/224 (8%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
++VCS CGLV+ +ID EWR+F+++ D D R G P D GLST I +
Sbjct: 21 ESVCSGCGLVVGEDAIDPGPEWRSFSDD--DTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 83 SG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKK 135
G +F + L R NR S +R + AF I + + L I+DRA +++
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 136 VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195
+++ +GR + AA +Y CR E RTV E+C+VA AT+ E+ A + + ++LG
Sbjct: 137 AQNEDLLKGRTLEGFAAAAIYATCRTEGVARTVDELCTVAK-ATQAELRAAYDALNRELG 195
Query: 196 LETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
L T G I +++ RF + L + + A+ V +++
Sbjct: 196 LPT------GPIDPREYVPRFATALELPTAVRQRAERLVDVAQD 233
>gi|399576051|ref|ZP_10769808.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399238762|gb|EJN59689.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 288
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 14/225 (6%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+TVC ECGLV+ ID EWR+FA++ D +P R G P D GLST I +
Sbjct: 22 ETVCGECGLVVAEDRIDRGPEWRSFADD--DTNPERTGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 83 SGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVE 137
G + L R NR S +R + AF I + RL L ++D A + + +
Sbjct: 80 KGRKRRQMARLRRQHNRARISSKRERNQVYAFTEIRRLVSRLSLPEQVRDHACSLVRSAQ 139
Query: 138 DQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197
++ RGR+ + AA +Y ACR RTV E+ VA A E A + + ++LGL
Sbjct: 140 NEDLVRGRSLEGFAAASVYAACRVAGVSRTVDEVTDVAR-ADANEQQAAYDALNRELGL- 197
Query: 198 TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+G I +++ RF S L ++ + A+ +++ E I
Sbjct: 198 -----PVGPIDPVEYIPRFASKLDVDASVERRARTLAEEAREAGI 237
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 104 GLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED 163
G I + I + +L + A+++ RA + ++ + + GRN + AACLY A R D
Sbjct: 200 GPIDPVEYIPRFASKLDVDASVERRARTLAEEAREAGIATGRNPSGVAAACLYTAARGTD 259
Query: 164 KPRTVKEICSVA 175
T +E VA
Sbjct: 260 GQLTQRETADVA 271
>gi|448331025|ref|ZP_21520299.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610149|gb|ELY63924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 324
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 22/241 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D G+ C+ECGLVL++ +ID EWRT +++ ++ RVG P +
Sbjct: 30 CPECDGS--VHRDEEHGERTCTECGLVLDADAIDYGPEWRTLDDDA--DERRRVGAPVSK 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
L D GLST I + A G +S L W R ++ D R L AF I
Sbjct: 86 LRHDKGLSTTIGWRDEDAYGNRISGRKREQLQRLRTWNERFTSKDAAERNLKQAFGEIER 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++ A +Y++ D+ GR+ +A+ A LY A R+ PRT+ SV
Sbjct: 146 MASALGLPEPCRETAGVLYRRAVDEGLLPGRSIEAMSTASLYAAARRHGTPRTLVAFTSV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K I RA Y+ +LGL Q IH ++ ++ S L +++ A + A+E +
Sbjct: 206 SR-VDKLPIQRAYRYLSSELGL---QIEPADPIH---YLPQYASVLEISDDAERLAREIL 258
Query: 235 Q 235
+
Sbjct: 259 E 259
>gi|429190412|ref|YP_007176090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134630|gb|AFZ71641.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 324
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 21/242 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
+C +C +V D +TVCS+CGLV+E ID EWR F + D + RVG PT
Sbjct: 28 YCPECGGR--LVSDAEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTT 84
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 85 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 144
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +
Sbjct: 145 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEISA 204
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R Y++++LGLE + ++ RF S+L + ++ + A+E
Sbjct: 205 VSR-VEKMELTRTYRYVIRELGLEVQPA------DPESYVPRFVSDLDLPDETERMAREL 257
Query: 234 VQ 235
++
Sbjct: 258 LE 259
>gi|385804846|ref|YP_005841246.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730338|emb|CCC41667.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 374
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 117/246 (47%), Gaps = 21/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T V + +T+CS CGLV+ ID EWR F N N RVG PT
Sbjct: 78 VCPECGGDT--VASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTT 134
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNR---GSNPDRGLILAFKTIA 113
L+ D GLST I N A G+ +S+ R W R + DR L A I
Sbjct: 135 ALMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEID 194
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
MS LG+ T ++ A+ IY++ D GR+ + + A LY A R + R++ E+ S
Sbjct: 195 RMSSALGIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELAS 254
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ EI R YI+++L L ++ + +++ RF S + N++ + A+
Sbjct: 255 VSR-VPALEIKRTYRYIIRELDL------QIPPTNPIEYIGRFASAIECNDETERRARAL 307
Query: 234 VQKSEE 239
Q++ E
Sbjct: 308 TQQATE 313
>gi|429190252|ref|YP_007175930.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134470|gb|AFZ71481.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 325
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 127/251 (50%), Gaps = 27/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV++ ID EWR F + D + RVG PT
Sbjct: 31 CPECSGR--LVSDDERGETVCEDCGLVVDEGEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 148 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEISAV 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K EI R Y+V++LGLE I D ++ RF S+L + ++ + A+
Sbjct: 208 SR-VEKDEIARTYRYVVRELGLE---------IQPADPESYVPRFASDLDLPDETERRAR 257
Query: 232 EAVQKSEEFDI 242
+ ++ +++ +I
Sbjct: 258 QLLKTAKDAEI 268
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 24/250 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+ VC++CGLV + ID EWR+F E+ D RVG P
Sbjct: 46 CPECAGR--IRPDSDRGERVCADCGLVSDGDEIDYGPEWRSFEGETSDRS--RVGAPITE 101
Query: 66 LLADGGLSTVI------AKPNGASGEFLS--SSLGRWQNRGSNPD---RGLILAFKTIAT 114
D GLST I A N SGE + + L W R ++ D R L A +
Sbjct: 102 RRHDKGLSTTIGWENRDAYGNTISGEKRAQLNRLRTWNERFTSKDARERNLKQALGELER 161
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++ A IY++ +++ GR+ +A+ A LY A RQ+ PRT SV
Sbjct: 162 MASALGLSEPCRETAAVIYRRAVEEELLPGRSIEAMTTASLYAAARQQGTPRTFSAFESV 221
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + RA Y+ +L L E+ ++R+F S+L ++++ + A++ +
Sbjct: 222 SR-VDDESTKRAYRYLSSELEL------EIAPPEPEQYLRQFASDLAVSDETERLARDVL 274
Query: 235 Q--KSEEFDI 242
+ K+EE I
Sbjct: 275 EAAKAEELHI 284
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 121/238 (50%), Gaps = 19/238 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D G+ C CG V E R+F ++ G+ + R G T+ + D GLST
Sbjct: 23 LITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRGNKE--RTGVGTSLTIHDQGLST 80
Query: 75 VIAKPN-GASGEFLSSSLGR-------WQNRGSNP--DRGLILAFKTIATMSDRLGLVAT 124
VI N A+G+ LSSS+ + W +R N DR AF + + D+L L +
Sbjct: 81 VINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELYRLKDKLSLSDS 140
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
+ ++A IY+K ++K +GR +L+A+ LY ACR+ PRT+K+I N K+++
Sbjct: 141 VVEKAAYIYRKAINKKLVKGRTISSLMASALYAACREVGTPRTLKDISDTTN-IKKRDLA 199
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+V +L L ++ + + + R S +G++ + + A E ++K+EE ++
Sbjct: 200 SNYRLLVNELDL------KIPVVDSVHNVARIASKIGISEKTKRLATELLRKAEESEL 251
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
+A ++ ++G+ K A E+ +K E+ + + G+N +L A LYI+CR+
Sbjct: 222 VARIASKIGISEKTKRLATELLRKAEESELTAGKNPMSLAATALYISCRK 271
>gi|448720890|ref|ZP_21703484.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445780503|gb|EMA31385.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 355
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 123/276 (44%), Gaps = 51/276 (18%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 29 HCPECGGR--LVSDTEHAETVCDDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS--------------------------------- 90
++ D GLST I + A G+ LSS
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLXLSSRQRQ 145
Query: 91 ----LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSR 143
L W R D R L A I M+ LGL +++ A+ IY++ ++
Sbjct: 146 KMQRLRTWNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLP 205
Query: 144 GRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVE 203
GR+ + + A LY A RQ PR++ EI +V+ K E+ R Y++++LGLE +
Sbjct: 206 GRSIEGVATASLYAAARQAGTPRSLDEISAVSR-VDKMELTRTYRYVIRELGLEVQPA-- 262
Query: 204 MGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S+L ++++ + A+E + + E
Sbjct: 263 ----DPESYVPRFVSDLDLSDETERMARELLDSARE 294
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 123/274 (44%), Gaps = 48/274 (17%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD----------- 53
C +C +V D +TVC++C LV+E ID EWR F D
Sbjct: 46 HCPECGGR--LVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTN 103
Query: 54 -----------------NDPVRVGGPTNPLLADGGLSTVIA-KPNGASGEFLSSS----- 90
++ RVG PT ++ D GLST I + A G LSS
Sbjct: 104 MMHDQGLSTNIGWQXEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGRSLSSRQREKM 163
Query: 91 --LGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGR 145
L W R ++ +R L A I M+ LGL T+++ ++ IY++ ++ GR
Sbjct: 164 QRLRTWNERFRTRNSKERNLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLPGR 223
Query: 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMG 205
+ + + A LY A RQ PR++ EI +V+ K EI R Y+V++LGL E+
Sbjct: 224 SIEGVATASLYAAARQAGTPRSLDEISAVSR-VEKAEIARTYRYVVRELGL------EVQ 276
Query: 206 TIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S+L + ++ + A + + ++E
Sbjct: 277 PADPESYVPRFASDLDLADETERRAHDLLSTAKE 310
>gi|237838491|ref|XP_002368543.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|211966207|gb|EEB01403.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|221484187|gb|EEE22483.1| transcription initiation factor IIB, putative [Toxoplasma gondii
GT1]
gi|221505834|gb|EEE31479.1| transcription initiation factor IIB, putative [Toxoplasma gondii
VEG]
Length = 464
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 25/259 (9%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-----GDNDPVR 58
+C + + +VFD S+GD +C ECGL++E + E EWR F+ E+ G D R
Sbjct: 113 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 172
Query: 59 VGGPTNPLLADGGLST--VIAKPNGASGEFLSSSLGRWQN-----------RGSNPDRGL 105
VG + L DGG+ T ++A G + S R Q + DR L
Sbjct: 173 VGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGSGVGSGDRQL 232
Query: 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKV-EDQKSSRGRNQDALLAACLYIACRQEDK 164
+AF I + + L + +RA EI K + +D R R+ + A Y+ACR+
Sbjct: 233 KVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNTTTMLAITYLACREAGV 292
Query: 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG-QSVEMGTIHAGDFMRRFCSNLGMN 223
RTVKE+ ++KE+G+A I K L G S E T + R+CS L ++
Sbjct: 293 TRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVNSAESAT----QLLPRYCSRLQLS 348
Query: 224 NQAVKAAQEAVQKSEEFDI 242
A+ +++ + I
Sbjct: 349 MHVADVAEHVAKRATQVII 367
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 23/243 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D G+ CS CG V++ +D EWR +E G RVG P
Sbjct: 10 ALCPECGNEM-LVTDQRTGEITCSVCGFVIQEKDVDMGPEWRNLEDEEGSRS--RVGAPL 66
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNR----------GSNPDRGLILAFKTI 112
+P+ D GLSTVI + ASG LS R S+ R L A +
Sbjct: 67 SPMYRDHGLSTVIEGVDEDASGRKLSKETREKMIRLKKLDATSQINSSETRNLQQAVNIL 126
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
D+L L T+ +RA IY++ RGR+ +++AA Y ACR PR ++E
Sbjct: 127 QIYVDKLRLSQTVAERAMLIYRRALRAGLVRGRSIKSIMAAATYAACRMLGTPRDLREFE 186
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+K I + ++K LGL ++ ++ + + +G++ + V QE
Sbjct: 187 RSYPAVKRKTIAQGYRLLLKHLGL------KVPVADPSIYVNKIAAKVGLDQRTV---QE 237
Query: 233 AVQ 235
A++
Sbjct: 238 AIR 240
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 123/248 (49%), Gaps = 20/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C C T V+ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 44 ELVCPICG-STNVIKDYERAEIVCENCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAP 101
Query: 63 TNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
+ D GLSTVI N S G+ +S++ L +WQ R D R L A
Sbjct: 102 MTYTIHDKGLSTVIDWRNKDSYGKDISANKRAQLYRLRKWQRRIRVSDASERNLAFALSE 161
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ ++ +LGL +++ A +Y+ ++ RGR+ + + AA LY ACR+ PRT+ EI
Sbjct: 162 LDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEI 221
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
A+ +KEIGR ++ ++LG +++ + D++ RF S LG+ + A
Sbjct: 222 AE-ASRVDRKEIGRTYRFLARELG------IKLAPTNPIDYVPRFASELGLPGEVESKAI 274
Query: 232 EAVQKSEE 239
+QK+ E
Sbjct: 275 AILQKAAE 282
>gi|448340358|ref|ZP_21529331.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445630664|gb|ELY83925.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 324
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 23/250 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C + D G+ C+ECGLVL++ +ID EW +E D RVG P
Sbjct: 28 AECPECSG--SIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPV 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNP---DRGLILAFKTI 112
+ + D GLST I + A G +S W R S+ +R L AF I
Sbjct: 83 SSIKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERYSSKNAQERNLKQAFGEI 142
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL ++ A +Y++ D+ GR+ +A+ ACLY A RQ PRT+
Sbjct: 143 ERMASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFE 202
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
SV+ K + RA Y+ +LGL + IH ++ ++ S L +++ A + A+E
Sbjct: 203 SVSR-VEKLPVQRAYRYLSSELGLRIEPA---DPIH---YLPQYASALEVSDDAERLARE 255
Query: 233 AVQKSEEFDI 242
++ ++ D+
Sbjct: 256 ILEAAKAHDL 265
>gi|386875848|ref|ZP_10118004.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806350|gb|EIJ65813.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 307
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 26/250 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVGGPT 63
C C K +++ D S G+ C+ CG V IDE E + + SGDN D R G P
Sbjct: 15 CQRCSKK-QIITDLSIGEIFCASCGFV-----IDEKIENLGYESGSGDNQKDTRRTGAPI 68
Query: 64 NPLLADGGLSTVIAKPN----GASGEF-LSSSLGRWQNR------GSNPDRGLILAFKTI 112
D GLSTVI+ N G S F SS++ R + + D +AF +
Sbjct: 69 TLSRNDFGLSTVISSENTDVHGKSIPFAFSSTVKRIRIQDARSRLAKRSDASFNVAFDFL 128
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
+ D+L + ++K+ A IY+K ++K + GR+ +++AA +YIACR R + +I
Sbjct: 129 ERLQDKLSVSDSVKETAAHIYRKALERKITSGRSIYSVVAASMYIACRNTHTLRNLSDIA 188
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+ N + I ++ IVKQL L ++ ++ DF+ + +NL ++ A E
Sbjct: 189 TATN-IKRTNIAQSYRAIVKQLDL------KIPLVNQSDFILKISNNLKISAGTKNLAIE 241
Query: 233 AVQKSEEFDI 242
++K+ E D+
Sbjct: 242 ILKKATELDM 251
>gi|448732431|ref|ZP_21714711.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445804689|gb|EMA54922.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 283
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V + +TVC++CGLV+ ID EWR+F E+ R G P
Sbjct: 7 CPECNGRLVAVGE----ETVCTKCGLVVAVDEIDRGPEWRSFERETRK----RTGAPLTR 58
Query: 66 LLADGGLSTVIAKPNGASGE--FLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLG 120
D GLST I + +G L + L R R S +R + AF I LG
Sbjct: 59 SRHDRGLSTEIGRSTRLTGRKRRLFARLRRQHTRSRIASKAERNRVYAFTEIRRQVCALG 118
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++DRA +++ +D RGR+ + AA +Y CR + RT+ EI +VA A++
Sbjct: 119 LSDSVRDRACVLFESAQDADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAK-ASR 177
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
E+ A + + + LGL TG I +++ RF S L + + A+E V
Sbjct: 178 DELTAAYDALNRDLGLPTGP------IDPSEYLARFASQLDLPHGVEARARELV 225
>gi|354609997|ref|ZP_09027953.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353194817|gb|EHB60319.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 285
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 18/244 (7%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C E V + VC++CGLV+ ID EWR+F ++ D +P R G P
Sbjct: 5 ANCPEC----EGVVRKQETERVCTDCGLVVCEDRIDRGPEWRSFDDD--DTNPERTGAPL 58
Query: 64 NPLLADGGLSTVIAKPNGASGEFLS--SSLGRWQNR---GSNPDRGLILAFKTIATMSDR 118
D GLST I + G + L R R GS DR + F I +
Sbjct: 59 TRSRHDRGLSTEIGRSTRLKGRKRRKFARLRRQHKRASIGSKADRNQVYGFTEIRRIVGA 118
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
LGL +++D+A ++ + + RGR+ + AA +Y CR RT+ EI V+ G
Sbjct: 119 LGLPRSVRDQACALFDSAQTEDLLRGRSIEGFAAAAVYAVCRTNGLSRTLAEIEHVSRG- 177
Query: 179 TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ E+ A + + + LGL T G I D++ R+ S L ++ ++A+E V +E
Sbjct: 178 DESELSAAYDAMNRDLGLPT------GPIDPRDYVPRYASELDLSTDVERSAREYVDIAE 231
Query: 239 EFDI 242
++
Sbjct: 232 RRNL 235
>gi|15236883|ref|NP_192806.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|3600041|gb|AAC35529.1| contains similarity to transcription factor TFIIB repeat domains
(Pfam: transcript_fac2.hmm, score: 49.16) [Arabidopsis
thaliana]
gi|4539446|emb|CAB40034.1| putative protein [Arabidopsis thaliana]
gi|7267766|emb|CAB81169.1| putative protein [Arabidopsis thaliana]
gi|39545886|gb|AAR28006.1| TFIIB6 [Arabidopsis thaliana]
gi|332657516|gb|AEE82916.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 182
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +CK+ TE V ++ GDT+C ECG V+E++ ID+ G
Sbjct: 4 DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLD-----------------GAS 46
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRL 119
TNP L G L T+I K +G S L+S L R QN + + + +A+ I M++ L
Sbjct: 47 TNPNLKSGHLPTIIFKLSGKSSS-LASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEAL 105
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
GL I + A +I K++ + G++ L AA + ACRQ + P+T+KEI +VAN
Sbjct: 106 GLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVAN-VD 164
Query: 180 KKEIGRAKEYIVKQLG 195
KEI +A VK LG
Sbjct: 165 MKEINKA----VKLLG 176
>gi|448354791|ref|ZP_21543546.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
hulunbeirensis JCM 10989]
gi|445637122|gb|ELY90278.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
hulunbeirensis JCM 10989]
Length = 332
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 26/242 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + + +T+C ECG V+++ ID EWR+FA++ D R G P
Sbjct: 10 CPEC----DGILRERETETICEECGAVVDTDPIDRGPEWRSFADDPTDRR--RTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-------------GSNPDRGLILAFKTI 112
D GLST+I G+ + + GR + + G+ + I AF I
Sbjct: 64 SRHDRGLSTMIGYGPGSQFDRSTRITGRKRRQLTRLQREHTRSQIGTKAEYNQIRAFNEI 123
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
+ RL L I ++A ++ + + +GR+ + AA +Y CR D PRT+ EI
Sbjct: 124 KCIVARLSLTDPITEQACALFDSAQSENLLQGRSLEGFAAAVVYAICRIHDLPRTIDEIL 183
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+VA+ A + E+ A + ++LGLET G I ++ RF S L + + A E
Sbjct: 184 TVAS-ADEAELKAAYSALNRELGLET------GPIDPTHYLPRFASELDLEMPTERRAHE 236
Query: 233 AV 234
V
Sbjct: 237 HV 238
>gi|399579012|ref|ZP_10772756.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236038|gb|EJN56978.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 21/241 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G++ C ECGLV++ +D EW+ + N ++ RVG PT
Sbjct: 26 CPECDG--KIVQDSEHGESSCEECGLVVDEMQVDRGPEWQAY-NADDRSEKSRVGAPTTQ 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I K G+ + L W R D R L A I
Sbjct: 83 LMHDKGLSTTIGWKNTDGYGKTIPDRKRARLQRLRTWDERFRTKDAHERNLKQALTEIRR 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++ A +Y++ GR+ + + ACLY A RQ PRT+ V
Sbjct: 143 MASALGLPEPPRETAGILYRRAVKDNLLPGRSIEGMATACLYAATRQHGSPRTLTTFADV 202
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + I RA Y+ ++LGL ++ + ++ +F S+L ++ +A + A E +
Sbjct: 203 SR-VKRLRIQRAYNYLSRELGL------QIEPENPSKYVPQFASSLDVSKEATREAHELL 255
Query: 235 Q 235
+
Sbjct: 256 E 256
>gi|397772740|ref|YP_006540286.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397681833|gb|AFO56210.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 324
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 23/250 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C + D G+ C+ECGLVL++ +ID EW +E D RVG P
Sbjct: 28 AECPECTG--SIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPV 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNP---DRGLILAFKTI 112
+ + D GLST I + A G +S W R S+ +R L AF I
Sbjct: 83 SSIKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERYSSKNAQERNLKQAFGEI 142
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL ++ A +Y++ D+ GR+ +A+ ACLY A RQ PRT+
Sbjct: 143 ERMASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFE 202
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
SV+ K + RA Y+ +LGL + IH ++ ++ S L +++ A + A+E
Sbjct: 203 SVSR-VEKLPVQRAYRYLSSELGLRIEPA---DPIH---YLPQYASALEVSDDAERLARE 255
Query: 233 AVQKSEEFDI 242
++ ++ D+
Sbjct: 256 ILEAAKARDL 265
>gi|448336699|ref|ZP_21525792.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445628249|gb|ELY81558.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 324
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 23/250 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C + D G+ C+ECGLVL++ +ID EW +E D RVG P
Sbjct: 28 AECPECTG--SIRHDAEHGERTCAECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPV 82
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNRGSNP---DRGLILAFKTI 112
+ + D GLST I N A G +S W R S+ +R L AF I
Sbjct: 83 SSVKHDRGLSTTIGWRNEDAYGNRVSERKRDRLRRLRTWNERFSSKNAQERNLKQAFGEI 142
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL ++ A +Y++ D++ GR+ +A+ ACLY A RQ PRT+
Sbjct: 143 ERMASALGLPEPCRETAGVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRTLVAFE 202
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
SV+ K + RA Y+ +LGL + IH ++ ++ S L +++ A + A+E
Sbjct: 203 SVSR-VEKLPVQRAYRYLSSELGLRIEPA---DPIH---YLPQYASALEVSDDAERLARE 255
Query: 233 AVQKSEEFDI 242
++ ++ D+
Sbjct: 256 ILEAAKARDL 265
>gi|448734087|ref|ZP_21716315.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445800941|gb|EMA51287.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 268
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 14/202 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + ++ G+ VC +CGL+LE+ +ID EWR F N + RVG PT
Sbjct: 27 CPECESAS-LIKSADQGELVCEDCGLILENDNIDRGPEWRAF-NHAERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I + A G LS+ L +WQ R D R L A
Sbjct: 85 TMHDKGLTTQIGWQDKDAYGRSLSAEKRTQMNRLRKWQERVRTKDAGERNLQFALSETDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ RGR+ +A+ A+ LY ACR+E PR+++E+ V
Sbjct: 145 MASALGVPRSVREVASVIYRRALSADLIRGRSIEAVAASALYAACRKEGIPRSLEEVTHV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGL 196
A +KEIGR YI ++L L
Sbjct: 205 AR-VEQKEIGRTYRYIARELEL 225
>gi|408404447|ref|YP_006862430.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365043|gb|AFU58773.1| putative transcription initiation factor IIB [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 313
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+ C + +VFD + VCS CG+V++ + EWR+++ E ++ R G P++
Sbjct: 21 CALCNSKS-IVFDSETSEAVCSSCGMVIKDNIESMGPEWRSYSGEDIESKS-RTGMPSSL 78
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIAT 114
D GLST I+ N A+G +S+ + RW SN R L AF ++T
Sbjct: 79 AFHDMGLSTFISYSNVDANGVAISAEQRSKVQRMRRWNKISSNNRSYHRNLKNAFAILST 138
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
+ D+L L T+ ++A Y+K D+K +GR+ AL+ A +Y ACR PRT++EI +
Sbjct: 139 IKDKLSLSDTLIEKAAYNYRKALDKKIIKGRSIRALIVAAVYAACRDLSVPRTLEEISAA 198
Query: 175 AN 176
AN
Sbjct: 199 AN 200
>gi|408402844|ref|YP_006860827.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363440|gb|AFU57170.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 310
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 19/239 (7%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G+ + + G V+ +++ + EWR F +E GD D R G P + D GLST
Sbjct: 2 VVTDPDTGELIRKDTGEVISDNALSQEKEWRAFGSE-GDADRARTGAPVSLAFHDMGLST 60
Query: 75 VIAKPN-GASGEFLSSS----LGR---WQ---NRGSNPDRGLILAFKTIATMSDRLGLVA 123
VI K + ASG + S+ +GR W + S +R L AF ++ + DRLGL
Sbjct: 61 VIGKESTDASGNQIDSATQMRMGRLRMWHSISHSHSPKERSLQQAFTMLSKIKDRLGLPD 120
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+ ++A +Y+K +++ RG + ++LAA +Y A RQ RT+ EI S + K+
Sbjct: 121 YVIEKAAYVYRKAQERGLIRGDSIGSVLAASIYTAVRQSGVLRTLDEI-SASIDVKPKQA 179
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
GR+ IV +L +++ I ++ R + L ++ + + A E ++++ + D+
Sbjct: 180 GRSYRRIVTEL------DIKVPMIDHARYIIRIANRLELDERTKRKALELIEQARKKDL 232
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 21/250 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ C+ CGLV++ ID EWR + D RVG PT
Sbjct: 26 CPECGG--QLNHDSEHGERACTGCGLVVDEDEIDHGPEWRAHTQKERDQK-SRVGAPTTN 82
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRW--QNRGSNP-DRGLILAFKTIAT 114
L+ D GLST I+ N A G LS L W ++R NP +R L AF I
Sbjct: 83 LMHDKGLSTTISWQNKDAYGNALSPEKRQRMQRLRTWDERSRTRNPKERNLKQAFAEIER 142
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A IY++ + GR+ + + A ++IA RQ + PR++ + V
Sbjct: 143 MASALGLPQSVRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQANIPRSLDTLAEV 202
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K I R Y+ ++L + + +++ RF S+L ++++ ++E +
Sbjct: 203 SR-VEKLSITRTYRYVTREL------DINLPPADPLEYLPRFVSDLDLSDEVEHRSRELL 255
Query: 235 QKSEEFDIRY 244
+ E + Y
Sbjct: 256 ETVSEDEPSY 265
>gi|448314361|ref|ZP_21504059.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445595188|gb|ELY49300.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 352
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 121/274 (44%), Gaps = 50/274 (18%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F D RVG PT
Sbjct: 28 CPECGGR--LISDTEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDKKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRLGLVATIKDRANEIYKKV--EDQKSSR---------------------------GR 145
M+ LGL +++ A+ IY++ ED R GR
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASSVIYRRALEEDLLPGR 204
Query: 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMG 205
+ + + A LY + RQ PR++ EI +V+ K E+ R YI+++LGLE +
Sbjct: 205 SIEGVATASLYASARQAGTPRSLDEISAVSR-VEKMELTRTYRYIIRELGLEVKPA---- 259
Query: 206 TIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S+L ++++ + A+E ++ + +
Sbjct: 260 --DPEHYVPRFVSDLDLSDETERMARELLESARQ 291
>gi|448726066|ref|ZP_21708488.1| transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445796834|gb|EMA47327.1| transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 329
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 21/254 (8%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C E DH G+T C ECG +++ + ID EWR + D RVG
Sbjct: 28 TLTVCPECDGRLE--HDHKHGETACVECGFIVDENEIDHGPEWRAHTADERDQR-SRVGS 84
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG--SNP-DRGLILAFK 110
PT +L D G+ST I N A G LSS L W R +NP +R L A
Sbjct: 85 PTTKMLHDEGVSTEIDWRNEDAYGNSLSSRQRQKVNRLRTWHTRSQTTNPQERNLKHALG 144
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
I M+ LGL + ++ A+ IY++ D+ RGR+ + + A +Y A RQ PR++ E
Sbjct: 145 EIGRMASALGLPQSTRETASVIYRRALDEDLLRGRSIEGMSTAAVYAAARQAGIPRSLDE 204
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ +V+ + I R +++++LGLE + + D++ R S+L ++ +A + +
Sbjct: 205 VAAVSR-IEQLRITRTYRHLIRELGLEIEPADPL------DYIPRLVSDLDLSEEAEQRS 257
Query: 231 QEAVQKSEEFDIRY 244
++ + E + RY
Sbjct: 258 RDLLTTVIETEERY 271
>gi|52550004|gb|AAU83853.1| transcription initiation factor IIB [uncultured archaeon GZfos34G5]
Length = 306
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 24/234 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D + C++CG+V+ + +D EWR++ E +R G P +
Sbjct: 15 CPECGSKN-VITDSRHAELYCADCGIVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 72
Query: 66 LLADGGLST----VIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
+ D GL T + A+ G + SS D+ L A I M+ LGL
Sbjct: 73 RIHDKGLGTPTPGLPARTRRLRGISIDSS-----------DKTLAFALVEIDRMACALGL 121
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
IK+ + +Y+K + +GR+ + L++A LYI CRQ PRT+KE+ V+ KK
Sbjct: 122 PNNIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK 181
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
I RA +++++L +++ ++ RFCS LG++ + + A +Q
Sbjct: 182 -IRRAYIFLLRRL------EIKLAPADPARYIPRFCSKLGLSAEIREKAMVILQ 228
>gi|448301515|ref|ZP_21491508.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584251|gb|ELY38575.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 331
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 26/252 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTV-------CSECGLVLESHSIDETSEWRTFANESGDN 54
TD S K E + G+ V C +CGLVLE ID EWR F + + +
Sbjct: 20 TDDQVSATKPEGETICPECDGNLVTRAAQVHCEDCGLVLEEGRIDHGPEWRAF-DAAEKD 78
Query: 55 DPVRVGGPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSN---PDR 103
+ RVG PT + D GLST I N A G LSS L W R DR
Sbjct: 79 EKSRVGAPTTNTMHDRGLSTNIGWQNKDAYGRALSSRKRQQIQRLRTWNERFRTRDATDR 138
Query: 104 GLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED 163
L A I M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ
Sbjct: 139 NLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGMATAALYAAVRQAG 198
Query: 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
PR++ E+ +V+ E+ R+ Y+V++L L M +++ R+ S L ++
Sbjct: 199 LPRSIDELATVSR-VPYLEVARSYRYLVRELDL------PMAPPDPLEYLPRYASLLEIS 251
Query: 224 NQAVKAAQEAVQ 235
N+ + A ++
Sbjct: 252 NETERQAHSLLE 263
>gi|110669282|ref|YP_659093.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627029|emb|CAJ53505.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 375
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + +T+CS CGLV+ ID EWR F N N RVG PT
Sbjct: 80 CPECGGDT--VASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTA 136
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNR---GSNPDRGLILAFKTIAT 114
L+ D GLST I N A G+ +S+ R W R + DR L A I
Sbjct: 137 LMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDR 196
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
MS L + T ++ A+ IY++ D GR+ + + A LY A R + R++ E+ SV
Sbjct: 197 MSSALDIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELASV 256
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ EI R YI+++L L ++ + +++ RF S + N++ + A+
Sbjct: 257 SR-VPALEIKRTYRYIIRELDL------QIPPTNPIEYIGRFASAIECNDETERRARALT 309
Query: 235 QKSEE 239
Q++ E
Sbjct: 310 QQATE 314
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Query: 43 EWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNG--------ASGEFLSSSLGRW 94
EWR F +E D RVG P + D GLST+I N A L +W
Sbjct: 4 EWRAFDHEQRDKR-TRVGAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKW 62
Query: 95 QNR---GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALL 151
Q + +R L A + S RLGL ++++ A+ IY+ + K RGR+ + ++
Sbjct: 63 QRKIRISGATERNLAFALSELDRDSSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVV 122
Query: 152 AACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD 211
AA LY ACRQ PRT+ EI V+ +KKE+GR ++ ++L +++ D
Sbjct: 123 AASLYAACRQCKVPRTLDEIAEVSR-VSKKEVGRTYRFLTREL------HIKLPPTSPVD 175
Query: 212 FMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ RF S LG++ + + E ++K+ E
Sbjct: 176 YVPRFASELGLSGEVQSRSIEIIEKAME 203
>gi|448346521|ref|ZP_21535406.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445632724|gb|ELY85935.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 324
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 23/248 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+ C+ECGLVL++ +ID EW +E D RVG P +
Sbjct: 30 CPECTGS--IRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPVSS 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNP---DRGLILAFKTIAT 114
+ D GLST I + A G +S W R S+ +R L AF I
Sbjct: 85 IKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERFSSKNAQERNLKQAFGEIER 144
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++ A +Y++ D+ GR+ +A+ ACLY A RQ PRT+ SV
Sbjct: 145 MASALGLPEPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFESV 204
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K + RA Y+ +LGL + IH ++ ++ S L +++ A + A+E +
Sbjct: 205 SR-VEKVPVQRAYRYLSSELGLRIEPA---DPIH---YLPQYASALEVSDDAERLAREIL 257
Query: 235 QKSEEFDI 242
+ ++ D+
Sbjct: 258 EAAKARDL 265
>gi|148508281|gb|ABQ76065.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 380
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + +T+CS CGLV+ ID EWR F N N RVG PT
Sbjct: 85 CPECGGDT--VASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTA 141
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNR---GSNPDRGLILAFKTIAT 114
L+ D GLST I N A G+ +S+ R W R + DR L A I
Sbjct: 142 LMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDR 201
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
MS L + T ++ A+ IY++ D GR+ + + A LY A R + R++ E+ SV
Sbjct: 202 MSSALDIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELASV 261
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ EI R YI+++L L ++ + +++ RF S + N++ + A+
Sbjct: 262 SR-VPALEIKRTYRYIIRELDL------QIPPTNPIEYIGRFASAIECNDETERRARALT 314
Query: 235 QKSEE 239
Q++ E
Sbjct: 315 QQATE 319
>gi|268322998|emb|CBH36586.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 24/234 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D + C++CG+V+ + +D EWR++ E +R G P +
Sbjct: 11 CPECGSKN-VITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 68
Query: 66 LLADGGLST----VIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
+ D GL T + A+ G + SS D+ L A I M+ LGL
Sbjct: 69 RIHDKGLGTPTPGLPARTRRLRGISIDSS-----------DKTLAFALVEIDRMACALGL 117
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
IK+ + +Y+K + +GR+ + L++A LYI CRQ PRT+KE+ V+ KK
Sbjct: 118 PNNIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK 177
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
I RA +++++L +++ ++ RFCS LG++ + + A +Q
Sbjct: 178 -IRRAYIFLLRRL------EIKLAPADPARYIPRFCSKLGLSAEIREKAMVILQ 224
>gi|82617153|emb|CAI64060.1| probable transcription initiation factor IIB [uncultured archaeon]
gi|82617265|emb|CAI64171.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 306
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 24/234 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D + C++CG+V+ + +D EWR++ E +R G P +
Sbjct: 15 CPECGSKN-VITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 72
Query: 66 LLADGGLST----VIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGL 121
+ D GL T + A+ G + SS D+ L A I M+ LGL
Sbjct: 73 RIHDKGLGTPTPGLPARTRRLRGISIDSS-----------DKTLAFALVEIDRMACALGL 121
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
IK+ + +Y+K + +GR+ + L++A LYI CRQ PRT+KE+ V+ KK
Sbjct: 122 PNNIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK 181
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
I RA +++++L +++ ++ RFCS LG++ + + A +Q
Sbjct: 182 -IRRAYIFLLRRL------EIKLAPADPARYIPRFCSKLGLSAEIREKAMVILQ 228
>gi|393234326|gb|EJD41890.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 345
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 19/249 (7%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEW------RTFANESGDNDPV 57
C DC+ H +V + S+GD VC++CGLVL +D SE RTFA+ GD DP
Sbjct: 26 ICPDCRDPHPRIVEEFSSGDLVCADCGLVLGDRIVDTRSECARRASGRTFADNEGD-DPS 84
Query: 58 RVGGPTNPLLADG-GLSTVIA---KPNGASGEFLSSSLGRWQN-RGSNPDRGLILAFKTI 112
RVG +PLL + LST I GA+ E + G R S R A + I
Sbjct: 85 RVGAAQDPLLDEAEQLSTSIGFRDDGTGAARELRRALQGTVAGIRASRTQR----ALRDI 140
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKEI 171
G+ + A ++K+VE+Q+ R + DA++A C+++ACR + RT +I
Sbjct: 141 GDKCAAFGMPLAVAASAKLLFKRVEEQRLLRSQAPDAVVATCIFVACRMDRATARTFHDI 200
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
C+ +K + R + + L + A D + R CS L + A
Sbjct: 201 CTKTR-VPRKVLARCFRVLERAFQLAPAGQGAVAGARAEDLLARHCSRLALRPGVATCAA 259
Query: 232 EAVQKSEEF 240
+ ++ +
Sbjct: 260 SLIVRARDL 268
>gi|351694833|gb|EHA97751.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 131
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + D+ AGD +C ECGLV ID SEWRTF+N DP +VG NPL
Sbjct: 15 CPNHPNAILVQDYRAGDMICPECGLVAGDRVIDVGSEWRTFSNGKATKDPSQVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGL 121
L++G LST+I K GA+ F ++QNR S+ D+ ++ AFK I TM+DR+ L
Sbjct: 75 LSNGDLSTMIGKGTGAA-SFDEFGYSKYQNRRTMSSSDQAMMNAFKEITTMADRINL 130
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 21/229 (9%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLV++ ID EWRTF +++ R G P D GLST I +
Sbjct: 34 NAVETVCEDCGLVIDEQRIDHGPEWRTF----DEDECKRTGAPLTAARHDRGLSTEIGRR 89
Query: 80 NGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRA 129
A+G LSS L R Q+RG S +R L + +S L L T++D+A
Sbjct: 90 TDANGNELSSQKQRRLWRLRREQSRGRFQSKAERNLAHGLGEVRRISSALELSETLRDQA 149
Query: 130 NEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEY 189
+++ +++ RGR+ +A+ AA +Y ACR +PRT+ E+ A I A
Sbjct: 150 CRLFRSAQNEDFLRGRSIEAMAAASIYGACRCNGRPRTLNEVTDSAR-VEDSRITNAYTT 208
Query: 190 IVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ +LGL + F+ R S L +++Q + A+ + SE
Sbjct: 209 LNTELGL------PAQPVTPSAFVPRLASELDVSDQLRQRARRLAEASE 251
>gi|407464443|ref|YP_006775325.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047631|gb|AFS82383.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 298
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 28/248 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C C K+T +V D + + CS CG+V+E +D+ R FA+ PV G
Sbjct: 8 CPRCGKNT-LVTDVESSEVFCSNCGIVVE-EKVDDGRPERRFAD-----SPVIKSHTGDK 60
Query: 63 TNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKT 111
T+ D GLST+I N ++G LS+S L +W +R ++ DR L A
Sbjct: 61 TSLTRHDRGLSTMINPFNKDSTGNPLSTSMKLSMTRLRKWDSRSRVKTSTDRNLQQALLE 120
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ M ++L L I ++A+ IY+K ++K RGR+ +L+AA LY ACR+ + PRT++E+
Sbjct: 121 LLKMKEKLSLPDAIAEKASYIYRKALEKKLVRGRSISSLVAASLYAACRESETPRTLREV 180
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
+ G +KEI I K+L L +M I + + + SN ++ + + A
Sbjct: 181 AATI-GIKRKEISATYRLIFKELDL------KMPVIDSVSCIAKIASNAELSEKTKRHAI 233
Query: 232 EAVQKSEE 239
+ ++ +E+
Sbjct: 234 KILKNAEK 241
>gi|448310263|ref|ZP_21500109.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445608424|gb|ELY62275.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
Length = 354
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 119/266 (44%), Gaps = 50/266 (18%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 31 CPECAGR--LVSDAEHAETVCEDCGLVVEEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKV--EDQKSSR---------------------------GR 145
M+ LGL +++ A+ IY++ ED R GR
Sbjct: 148 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASSVIYRRALEEDLLPGR 207
Query: 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMG 205
+ + + A LY + RQ PR++ EI +V+ K E+ R Y++++LGL E+
Sbjct: 208 SIEGVATASLYASARQAGTPRSLDEISAVSR-VEKDEVARTYRYVIRELGL------EVK 260
Query: 206 TIHAGDFMRRFCSNLGMNNQAVKAAQ 231
++ RF S+L ++++ + A+
Sbjct: 261 PADPESYVPRFASDLELSDETERRAR 286
>gi|357289650|gb|AET72963.1| transcription initiation factor IIB [Phaeocystis globosa virus 12T]
gi|357292445|gb|AET73781.1| transcription initiation factor IIB [Phaeocystis globosa virus 14T]
Length = 389
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 16/248 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVC--SECGLVLESHSIDETSEWRTF-ANESGDNDPVRVGG 61
CS CK +F G C ++CG++ + + +D +EWR + A+++ +DP R G
Sbjct: 82 ICSACK---TALFVGDEGFLSCPNTKCGIIYKDN-LDLGAEWRFYGADDNQSSDPTRCGM 137
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRL 119
P NPLL + S + P S E + L R+ S P ++ F+ I +S
Sbjct: 138 PINPLLKESSYSCKVLCPGKLSHE--NWKLKRYTAWQSMPYKEKSQYDEFQLITIISQNA 195
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA---N 176
G+ I D A +K + + ++ RG N+D ++AA +YI+CR D PRT KEI + N
Sbjct: 196 GISKMIIDEATRYHKIISESQTFRGLNRDGIIAASIYISCRVNDFPRTAKEIADIFHLDN 255
Query: 177 GATKKEIGRAKEYI--VKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + A I ++ ++ +++ F+ R+CS L +NN+ +
Sbjct: 256 TSATRGCKNALSIINDIEHANAQSDGIIKLSKTTPLSFIERYCSKLNINNELTMLCKFLA 315
Query: 235 QKSEEFDI 242
+K + ++
Sbjct: 316 KKIDRLNL 323
>gi|386874734|ref|ZP_10116960.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807357|gb|EIJ66750.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 19/243 (7%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL-L 67
CK + + D G+ VC CGL+L + D + E ++ E D + GP + L +
Sbjct: 18 CKTYPAIT-DSERGEIVCGGCGLILLQNMADASYENNGYSQE--DFMKLSRTGPASSLTM 74
Query: 68 ADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG-SNPDRGLILAFKTIATMSDRL 119
D GLSTVI +SG LS+ L W R S L AF + M +L
Sbjct: 75 YDKGLSTVIGTNKDSSGNALSNKTKYEFNRLRTWDQRSKSRKTAALSKAFTLLHGMKTKL 134
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
G+ + + A IY+KV K +RGR +L++A LY ACR+ + PRT+ +I + N
Sbjct: 135 GVPDNVVESAAYIYRKVVSAKLTRGRTMTSLISASLYAACRENNIPRTLDDIANAGN-VE 193
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ + R I+K+LGL Q F+ + +N+ + + + A E +++ E+
Sbjct: 194 RRILSRDLRTIIKKLGLNLNQ------YDTSSFISKISNNMDLKEKTKRDAFEILKRCEK 247
Query: 240 FDI 242
I
Sbjct: 248 EQI 250
>gi|76803176|ref|YP_331271.1| transcription initiation factor TFB 7 [Natronomonas pharaonis DSM
2160]
gi|76559041|emb|CAI50639.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 287
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 14/222 (6%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+TVC ECGLV+ +D EWR+F+++ + +P R G P D GLST I +
Sbjct: 22 ETVCDECGLVVAEDELDRGPEWRSFSDD--ETNPERCGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 83 SGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVE 137
G NR S +R + F + + +LGL +++RA +++ +
Sbjct: 80 KGRKRRRVARMRRQHNRAQVSSKRERNQMHGFIEVRRLIGQLGLPEALQERACVLFESAQ 139
Query: 138 DQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197
++ +GR + AA +Y+ CR RT+ EI + A+ AT+ E+ A + + ++LG+
Sbjct: 140 NEDLLQGRCIEGFAAAAVYVVCRTASVSRTLDEIVAAAS-ATRDELTVAYDALNRELGIP 198
Query: 198 TGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
T G I +++ RF S LG+ + + A+E +EE
Sbjct: 199 T------GPIAPTEYLARFASKLGLPSAVERTARELATDAEE 234
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 96 NRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACL 155
NR G I + +A + +LGL + ++ A E+ E+ + GR+ + AACL
Sbjct: 192 NRELGIPTGPIAPTEYLARFASKLGLPSAVERTARELATDAEESGLAVGRDPSGVAAACL 251
Query: 156 YIACRQEDKPRTVKEICSVA 175
Y A + D T E VA
Sbjct: 252 YTAAEEHDHDVTQAEAGDVA 271
>gi|324514940|gb|ADY46036.1| Transcription initiation factor IIB [Ascaris suum]
Length = 202
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
A I MS R+ L +I+D A ++++ V D ++ G+N +A AACLYIACR+E PRT
Sbjct: 4 ALGVIREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRKEGVPRT 63
Query: 168 VKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAV 227
KE+C+V+ +KKEIGR + ++ L Q I + DFM RFC NLG+++
Sbjct: 64 FKEVCAVSR-VSKKEIGRCFKLAIRSLETNLEQ------ITSADFMSRFCGNLGLSHALQ 116
Query: 228 KAAQEAVQKSEEFDI 242
A +K+ E D+
Sbjct: 117 MVATTIAKKAVERDL 131
>gi|257387108|ref|YP_003176881.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257169415|gb|ACV47174.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 286
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 18/225 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D SA + VC++CGLV++ +D EWR+F E R G P
Sbjct: 8 CPEC----DGAIDASAREAVCTQCGLVVDEDQLDRGPEWRSF--EDDGEQKARTGAPLTR 61
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNR---GSNPDRGLILAFKTIATMSDRLG 120
D GLST I + G + L R +R GS DR + F I + RL
Sbjct: 62 SRHDRGLSTEIGRSTRLKGRKRRQMARLRREHSRAQTGSKRDRNQRIGFIEIRRLVSRLD 121
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +TI+DRA +++ ++ GR+ + AA +Y CR + RTV+E+ + A +T
Sbjct: 122 LSSTIRDRACVLFESAQEADLLVGRSIEGFAAAAVYATCRTSEIARTVEEVAADAQAST- 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225
E+ A + I ++LGL T G I +++ RF S L + ++
Sbjct: 181 GELRVAYDAINRELGLPT------GPIDPREYLPRFASELDVPHE 219
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C ++V D+ +G+ CS+CG V+ + EWR+F + G N R G
Sbjct: 5 TKELCPRCA-QGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNK-ARAGA 62
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFK 110
PT+ + D GL+T+I N ASG+ LS+S L W +R P DR AF
Sbjct: 63 PTSLTMHDMGLATIINPINKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFS 122
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ + D+L + ++ ++A IY+K ++ RGR+ AL+AA LY ACR PR +K+
Sbjct: 123 ELNRLKDKLAISDSVIEKAAYIYRKALEKGLVRGRSISALMAAALYAACRDTSTPRNLKD 182
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
+ AN +K+I R +VK+L L +M + + R S +G+ + + A
Sbjct: 183 VEQAAN-IKRKDIARCYRLLVKELDL------KMPVTDSIQCVARIASRIGIAEKTKRYA 235
Query: 231 QEAVQKSEEFDI 242
+ ++ ++E ++
Sbjct: 236 TKVLKMAQENEV 247
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
+ + +A ++ R+G+ K A ++ K ++ + S G++ L AA LY++C + + +T
Sbjct: 214 SIQCVARIASRIGIAEKTKRYATKVLKMAQENEVSAGKDPMGLAAAALYLSCVKNGEDKT 273
Query: 168 VKEICSVAN 176
++I AN
Sbjct: 274 QRDIAEAAN 282
>gi|55377937|ref|YP_135787.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448658471|ref|ZP_21682871.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55230662|gb|AAV46081.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445761196|gb|EMA12445.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 322
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 27/244 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ ++ IY++ GR+ + + A LY A R PR++ E+ V
Sbjct: 146 MASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATAALYAAARMAGNPRSLDEMARV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K E+ R YIV++L LE + D ++ RF S+L ++ + + A+
Sbjct: 206 SR-VEKMELTRTYRYIVRELSLE---------VQPADPEHYLPRFISDLDLSEETQRQAR 255
Query: 232 EAVQ 235
+ V+
Sbjct: 256 DLVE 259
>gi|448639408|ref|ZP_21676734.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445762687|gb|EMA13905.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 322
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 27/244 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ ++ IY++ GR+ + + A LY A R PR++ E+ V
Sbjct: 146 MASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATAALYAAARMAGNPRSLDEMARV 205
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K E+ R YIV++L LE + D ++ RF S+L ++ + + A+
Sbjct: 206 SR-VEKMELTRTYRYIVRELSLE---------VQPADPEHYLPRFISDLDLSEETQRQAR 255
Query: 232 EAVQ 235
+ V+
Sbjct: 256 DLVE 259
>gi|448683556|ref|ZP_21692273.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445783695|gb|EMA34520.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 286
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 18/224 (8%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
++VCS CGLV+ +ID EWR+F ++ D R G P D GLST I +
Sbjct: 21 ESVCSSCGLVVGEDAIDPGPEWRSFDDDDTDR--ARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 83 SG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKK 135
G +F + L R NR S +R + AF I + + L I+DRA +++
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFES 136
Query: 136 VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195
+++ +GR + AA +Y CR E RTV E+C+VA AT+ E+ A + + ++LG
Sbjct: 137 AQNENLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAK-ATQAELRAAYDALNRELG 195
Query: 196 LETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
L T G I +++ RF + L + + A+ V ++++
Sbjct: 196 LPT------GPIDPREYVPRFATALDLPTAVRQRAERLVDEAQD 233
>gi|448356416|ref|ZP_21545149.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
chahannaoensis JCM 10990]
gi|445653449|gb|ELZ06320.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
chahannaoensis JCM 10990]
Length = 399
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 30/245 (12%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + + +T+C ECG ++++ ID EWR+F ++ D R G P
Sbjct: 9 HCPEC----DGILRERETETICEECGAIVDTDLIDRGPEWRSFVDDPTDR--RRTGAPLT 62
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSS------------LGRWQNR---GSNPDRGLILAF 109
D GLST+I G+ +F S+ L R R + + I AF
Sbjct: 63 RSRHDRGLSTMIGY--GSGSQFDQSTRITGRKRRQLTRLQREHTRSQIATKAEYNQIRAF 120
Query: 110 KTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
I + RL L I ++A ++ + + +GR+ + AA +Y CR + PRT+
Sbjct: 121 NEIRCIVARLSLTDPITEQACALFDNAQSENLLQGRSLEGFAAAVVYAICRTHNLPRTID 180
Query: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKA 229
EI +VA+ A + E+ A + ++LGLETG I D++ RF S L + K
Sbjct: 181 EIVTVAS-ADEAELKAAYTALNRELGLETGP------IDPTDYLPRFASELDLEMPTEKR 233
Query: 230 AQEAV 234
A E V
Sbjct: 234 AHEHV 238
>gi|76802797|ref|YP_330892.1| transcription initiation factor TFB 5 [Natronomonas pharaonis DSM
2160]
gi|76558662|emb|CAI50254.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 327
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C + +H G+TVCS+CGLV+E ID EWR F + D + RVG PT
Sbjct: 31 ATCPECDARLQADTEH--GETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPT 87
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTI 112
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 TNMMHDKGLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEI 147
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ + PR++ E+
Sbjct: 148 ERMASALGLPENVRETASVIYRRALSEDLLPGRSIEGVATAALYAAARQANVPRSLDEVE 207
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ + E+ R YI+++L LE + ++ RF S+L +++ + A++
Sbjct: 208 HVSR-VDRMELTRTYRYIIRELNLEVQPA------DPESYIPRFVSDLDRSDEVERRARQ 260
Query: 233 AVQKSEE 239
+ + E
Sbjct: 261 LIDNARE 267
>gi|281209229|gb|EFA83402.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 298
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 114/244 (46%), Gaps = 46/244 (18%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
FC +CK T ++V D++ GD +C +CG V+ IDE +++R FA+ DN RVG
Sbjct: 24 FCDNCKSETPDIVEDYARGDLICRDCGYVVSDRIIDEGADFRNFADSLDDNS--RVGYTA 81
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLG 120
+PLL L+T I+ +P+ +S S+L R Q++ S ++ LI F I ++D
Sbjct: 82 DPLLRVADLTTTISYQPSTSSSSTTGSNLARQQSKINTSQSNKNLISGFSEIERIADH-- 139
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
AA Y A RQ+ RT+ EI +V +K
Sbjct: 140 ------------------------------FAAAFYYASRQQGMTRTIAEIINVIR-VSK 168
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGT--IHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
K+I R + + +L S EM T + DF+ RFC+NLG++ VK + K
Sbjct: 169 KDISRCMKIMKSRL-----PSDEMTTKSLTTDDFVSRFCNNLGLSKDIVKYSTFITNKLA 223
Query: 239 EFDI 242
E +
Sbjct: 224 ELQV 227
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 119/240 (49%), Gaps = 25/240 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C + D G+TVCS+CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 60 CPECGGR--LASDTEHGETVCSDCGLVVEEDSVDRGPEWRAF--NSGERDSKSRVGAPTT 115
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSSLG-----------RWQNRGSNPDRGLILAFKTI 112
++ D GLST I + A G+ LS R++ R S +R L A I
Sbjct: 116 NMMHDKGLSTNIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSK-ERNLKQALGEI 174
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++ E
Sbjct: 175 DRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVGNPRSLDEFT 234
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+V+ K E+ R Y+V++LGL + ++ RF S L ++++ + A+E
Sbjct: 235 AVSR-VEKMELTRTYRYVVRELGL------RVQPADPTSYVPRFVSRLDLSDETERRARE 287
>gi|344210357|ref|YP_004794677.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343781712|gb|AEM55689.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 286
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 18/224 (8%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
++VC CGLV+ +ID EWR+F ++ D R G P D GLST I +
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSFDDDDTDR--ARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 83 SG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKK 135
G +F + L R NR S +R + AF I + + L I+DRA +++
Sbjct: 79 KGRKRRQF--ARLRREHNRAQISSKRERNKVYAFTEIRRIISSMSLSDAIRDRACVLFES 136
Query: 136 VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195
+++ +GR + AA +Y CR E RTV E+C+VA AT+ E+ A + + ++LG
Sbjct: 137 AQNEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAK-ATQSELRAAYDALNRELG 195
Query: 196 LETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
L T G I +++ RF + L + + A++ V ++++
Sbjct: 196 LPT------GPIDPREYVPRFATTLDLPTAVRQRAEQLVDEAQD 233
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 20/248 (8%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C C V+ D+ + VC++CG VL+ + D EWR F +E RVG P
Sbjct: 37 ELICPICGSKN-VIKDYERAEIVCADCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAP 94
Query: 63 TNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
+ D GLSTVI N S G+ +S+ L +WQ R D R L A
Sbjct: 95 MTYTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSE 154
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ ++ +LGL +++ A +Y+ ++ RGR+ + + AA LY ACR+ PRT+ EI
Sbjct: 155 LDRIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEI 214
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
++ +KEIGR +I ++L + + + D++ RF S L + + A
Sbjct: 215 AEISR-VDRKEIGRTYRFISREL------KIRLAPTNPIDYVPRFASELKLPGEVESKAI 267
Query: 232 EAVQKSEE 239
+QK+ E
Sbjct: 268 AILQKANE 275
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 27/251 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V D G+TVC++CGLV+E S+D EWR F + D+ RVG PT
Sbjct: 39 CPECEGN--LVTDTEHGETVCTDCGLVVEQDSVDRGPEWRAFDSSERDSKS-RVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS + W R D R L A I
Sbjct: 96 MMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSKERNLKQALGEIDR 155
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + A LY A RQ PR++ E +V
Sbjct: 156 MASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAGNPRSLDEFTAV 215
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGD---FMRRFCSNLGMNNQAVKAAQ 231
+ K E+ R Y++++L LE I D ++ RF S L ++ + + A+
Sbjct: 216 SR-VDKMELTRTYRYVIRELKLE---------IQPADPESYVPRFVSRLDLSEETQRLAR 265
Query: 232 EAVQKSEEFDI 242
E + ++E I
Sbjct: 266 ELLDGAKESGI 276
>gi|448321391|ref|ZP_21510871.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
gi|445604251|gb|ELY58202.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
Length = 325
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--VISDTEHAETVCQDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ ++ GR+ + + A LY A RQ PR++ EI +V
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEISAV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ K E+ R Y++++LGLE + ++ RF S+L ++++ + A++ +
Sbjct: 207 SR-VDKMELTRTYRYVIRELGLEVQPA------DPEHYVPRFVSDLDLSDETERMARDLL 259
Query: 235 QKSEE 239
+ + +
Sbjct: 260 ESARQ 264
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,807,639,584
Number of Sequences: 23463169
Number of extensions: 156964614
Number of successful extensions: 420840
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 362
Number of HSP's that attempted gapping in prelim test: 415011
Number of HSP's gapped (non-prelim): 2929
length of query: 245
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 106
effective length of database: 9,097,814,876
effective search space: 964368376856
effective search space used: 964368376856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)