BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025983
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|E Chain E, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|I Chain I, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|M Chain M, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|Q Chain Q, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 207
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 89/141 (63%), Gaps = 7/141 (4%)
Query: 102 DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQ
Sbjct: 2 DRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQ 61
Query: 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLG 221
E PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL
Sbjct: 62 EGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLC 114
Query: 222 MNNXXXXXXXXXXXXSEEFDI 242
+ + E D+
Sbjct: 115 LPKQVQMAATHIARKAVELDL 135
>pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib:
Dynamics And Interaction With Vp16 Activation Domain, 20
Structures
Length = 208
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 88/140 (62%), Gaps = 7/140 (5%)
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE
Sbjct: 4 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 63
Query: 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM 222
PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL +
Sbjct: 64 GVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCL 116
Query: 223 NNXXXXXXXXXXXXSEEFDI 242
+ E D+
Sbjct: 117 PKQVQMAATHIARKAVELDL 136
>pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib
Length = 206
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 88/140 (62%), Gaps = 7/140 (5%)
Query: 103 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE 162
R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE
Sbjct: 2 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 61
Query: 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGM 222
PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL +
Sbjct: 62 GVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCL 114
Query: 223 NNXXXXXXXXXXXXSEEFDI 242
+ E D+
Sbjct: 115 PKQVQMAATHIARKAVELDL 134
>pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 345
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 116/227 (51%), Gaps = 12/227 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGM 222
E G+ + L G + M ++ RFCS+LG+
Sbjct: 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL 248
>pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
Length = 204
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 7/139 (5%)
Query: 104 GLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED 163
++ AFK I TM+DR+ L DR N ++++ +QKS +GR DA+ +ACLYIACRQE
Sbjct: 1 AMMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEG 60
Query: 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL +
Sbjct: 61 VPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLP 113
Query: 224 NXXXXXXXXXXXXSEEFDI 242
+ E D+
Sbjct: 114 KQVQMAATHIARKAVELDL 132
>pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 102 DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
+R L A + ++ +L L +++ A +Y++ + RGR+ ++++AAC+Y ACR
Sbjct: 7 ERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRL 66
Query: 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLG 221
PRT+ EI +A KKEIGR+ +I + L L + + D++ +F LG
Sbjct: 67 LKVPRTLDEIADIAR-VDKKEIGRSYRFIARNLNLTPKKLF----VKPTDYVNKFADELG 121
Query: 222 MNN 224
++
Sbjct: 122 LSE 124
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 79 IARVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 132
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I + + + G++ L+AA LYIA E + RT +E+ VA R KE +
Sbjct: 133 ILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVE 192
Query: 192 K 192
K
Sbjct: 193 K 193
>pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 102 DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQ 161
+R L A + ++ +L L +++ A +Y++ + RGR+ ++++AAC+Y ACR
Sbjct: 6 ERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRL 65
Query: 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLG 221
PRT+ EI +A KKEIGR+ +I + L L + + D++ +F LG
Sbjct: 66 LKVPRTLDEIADIAR-VDKKEIGRSYRFIARNLNLTPKKLF----VKPTDYVNKFADELG 120
Query: 222 MNN 224
++
Sbjct: 121 LSE 123
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 78 IARVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 131
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I + + + G++ L+AA LYIA E + RT +E+ VA R KE +
Sbjct: 132 ILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVE 191
Query: 192 K 192
K
Sbjct: 192 K 192
>pdb|1RLY|A Chain A, Rdc-Derived Models Of The Zinc Ribbon Domain Of Human
General Transcription Tfiib (Zinc Bound Structures)
pdb|1RO4|A Chain A, Rdc-Derived Models Of The Zinc Ribbon Domain Of Human
General Transcription Factor Tfiib (Zinc Free
Structures)
Length = 60
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANE 50
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 58
>pdb|1DL6|A Chain A, Solution Structure Of Human Tfiib N-Terminal Domain
Length = 58
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANE 50
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+
Sbjct: 14 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 57
>pdb|3K1F|M Chain M, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
Length = 197
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN 49
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSN 68
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C
Length = 235
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 86 FLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSS-RG 144
FLS+ L + + D I +K + T DRL L + A + ++ +K+ +G
Sbjct: 11 FLSTDLESLEPTCLSKDT--IYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKG 68
Query: 145 RNQDALLAACLYIACRQEDKPRTVKEICSVAN--GATKKEIGRA 186
+ +AL+A C+Y++C+ E+ P ++ IC+ AN + K ++ R+
Sbjct: 69 FSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRS 112
>pdb|1PFT|A Chain A, N-Terminal Domain Of Tfiib, Nmr
Length = 50
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF 47
C C+ E+++D G+ VC++CG V+E + ID EWR F
Sbjct: 8 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF 48
>pdb|3DFV|D Chain D, Adjacent Gata Dna Binding
pdb|3DFV|C Chain C, Adjacent Gata Dna Binding
pdb|3DFX|A Chain A, Opposite Gata Dna Binding
pdb|3DFX|B Chain B, Opposite Gata Dna Binding
Length = 63
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 6 CSDCKKHTEVVFDHSA-GDTVCSECGLVLESHSIDE 40
C++C+ T ++ +A GD VC+ CGL + H+I+
Sbjct: 10 CANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINR 45
>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC7|B Chain B, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC9|A Chain A, Dna Binding By Gata Transcription Factor-Complex 3
pdb|4HCA|A Chain A, Dna Binding By Gata Transcription Factor-Complex 1
Length = 115
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 6 CSDCKKHTEVVFDHSA-GDTVCSECGLVLESHSIDE 40
C++C+ T ++ +A GD VC+ CGL + H+I+
Sbjct: 62 CANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINR 97
>pdb|1GAT|A Chain A, Solution Structure Of The Specific Dna Complex Of The
Zinc Containing Dna Binding Domain Of The Erythroid
Transcription Factor Gata-1 By Multidimensional Nmr
pdb|1GAU|A Chain A, Solution Structure Of The Specific Dna Complex Of The
Zinc Containing Dna Binding Domain Of The Erythroid
Transcription Factor Gata-1 By Multidimensional Nmr
Length = 60
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 6 CSDCKKHTEVVFDHSA-GDTVCSECGLVLESHSID 39
CS+C+ T ++ S GD VC+ CGL + H ++
Sbjct: 7 CSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVN 41
>pdb|3GAT|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of
Chicken Gata-1 Bound To Dna, 34 Structures
pdb|2GAT|A Chain A, Solution Structure Of The C-Terminal Domain Of Chicken
Gata- 1 Bound To Dna, Nmr, Regularized Mean Structure
Length = 66
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 6 CSDCKKHTEVVFDHSA-GDTVCSECGLVLESHSID 39
CS+C+ T ++ S GD VC+ CGL + H ++
Sbjct: 7 CSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVN 41
>pdb|2ZE3|A Chain A, Crystal Structure Of Dfa0005 Complexed With
Alpha-Ketoglutarate: A Novel Member Of The IclPEPM
SUPERFAMILY FROM ALKALI-Tolerant Deinococcus Ficus
Length = 275
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 179 TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 220
T+ E+GR E IV+ + + +E G HA + +RR +
Sbjct: 60 TRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHF 101
>pdb|1QXF|A Chain A, Solution Structure Of 30s Ribosomal Protein S27e From
Archaeoglobus Fulgidus: Gr2, A Nesg Target Protein
Length = 66
Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECG 30
C DC+ H +V+FDH + C CG
Sbjct: 10 CPDCE-HEQVIFDHPSTIVKCIICG 33
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From
Mus Musculus
Length = 88
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 4 AFCSDCKKHTEVVFDHSAGDT---VCSECGLVLESHSIDETSEW 44
AFC+ C + +V AG+T VC +C +L S D S+W
Sbjct: 34 AFCNGCLSFSALV--PRAGNTQQKVCKQCHTILTRGSSDNASKW 75
>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|16PK|A Chain A, Phosphoglycerate Kinase From Trypanosoma Brucei
Bisubstrate Analog
Length = 415
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 3/130 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
F DC +VV S GD V E + + + A V +
Sbjct: 105 FAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFG 164
Query: 65 PLLADGGLSTVIAK--PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
D T I K NGA+G + + + NP R L+ A A +SD++ L+
Sbjct: 165 TAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLV-AIVGGAKVSDKIQLL 223
Query: 123 ATIKDRANEI 132
+ R + +
Sbjct: 224 DNMLQRIDYL 233
>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P21 Crystal Form
pdb|3VEK|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
pdb|3VEK|F Chain F, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
Length = 119
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 19 HSAGDTVCSECGLVLESHSIDE 40
+++GD VC+ CGL + H ++
Sbjct: 73 NASGDPVCNACGLYFKLHQVNR 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,095,587
Number of Sequences: 62578
Number of extensions: 283788
Number of successful extensions: 583
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 28
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)