BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025983
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/245 (94%), Positives = 241/245 (98%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM NQ VKAAQE+VQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2
SV=1
Length = 313
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/246 (93%), Positives = 234/246 (95%), Gaps = 1/246 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
GP+NPLL DGGLSTVIAKPNG G EFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
GLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
Query: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNNQAVKAAQEAVQKSEE
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEE 240
Query: 240 FDIRYS 245
FDIR S
Sbjct: 241 FDIRRS 246
>sp|Q8W0W3|TF2B_ORYSJ Transcription initiation factor IIB OS=Oryza sativa subsp. japonica
GN=TFIIB PE=1 SV=1
Length = 312
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/245 (88%), Positives = 231/245 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNNQAVKAAQEAVQ+SEE
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 OS=Arabidopsis thaliana
GN=TFIIB1 PE=1 SV=1
Length = 312
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/245 (85%), Positives = 229/245 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
LVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
KEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N AVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEF 240
Query: 241 DIRYS 245
DIR S
Sbjct: 241 DIRRS 245
>sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster
GN=TfIIB PE=2 SV=1
Length = 315
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 154/238 (64%), Gaps = 12/238 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L T
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 133 IVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 191
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 192 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2
SV=1
Length = 316
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 16/240 (6%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLV 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DR+ L
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKE
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKE 190
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
IGR + I+K LET SV++ I GDFM RFCSNL + Q AA +K+ E D+
Sbjct: 191 IGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 244
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 206 bits (524), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 148/238 (62%), Gaps = 12/238 (5%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVAT 124
L+ G L+T+I K G S F ++QNR S+ DR ++ AFK I MSDR+ L
Sbjct: 75 LSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRN 133
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 134 IIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIG 192
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + I+K LET + I GDFM RFCSNLG+ Q AA +K+ E D+
Sbjct: 193 RCFKLILK--ALETN----VDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDL 244
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 137/237 (57%), Gaps = 12/237 (5%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
+D A+ I+K V + K+ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR
Sbjct: 125 QDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGR 183
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
+ IV+ L Q I + DFM RFC NL + N AA + + + D+
Sbjct: 184 CFKIIVRSLETNLEQ------ITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDL 234
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum
GN=gtf2b PE=3 SV=1
Length = 325
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 149/243 (61%), Gaps = 16/243 (6%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
+C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLG 120
NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMN 136
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT KEI ++ N K
Sbjct: 137 LPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPK 195
Query: 181 KEIGRAKEYIVKQLGLETGQSV-EMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
KEI R + I+K ET SV + TI + DF RFCS L + N K A+ + + +
Sbjct: 196 KEISRCYK-IMK----ETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMD 250
Query: 240 FDI 242
I
Sbjct: 251 MGI 253
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB
PE=3 SV=1
Length = 293
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 140/238 (58%), Gaps = 34/238 (14%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ GD GGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GDA----FGGPENPL 51
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVAT 124
L+ G LST+I P S F + ++ NR + + DR LI AFK I++M+DR+ L T
Sbjct: 52 LSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKT 110
Query: 125 IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184
I DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIG
Sbjct: 111 IVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 169
Query: 185 RAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
R + +K LET SV++ I DFM RFC+NL + N +AA +K+ E DI
Sbjct: 170 RCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 221
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 139/247 (56%), Gaps = 19/247 (7%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D + L
Sbjct: 79 ANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISL 134
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
I D A ++YK+V+D K+ +G++ +++AAC+YIACRQ PRT EIC++ N KK
Sbjct: 135 PKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPKK 193
Query: 182 EIGRAKEYIVKQL-----------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
EIGR + + + L L+ + ++ + A D M RFC+ L + AA
Sbjct: 194 EIGRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLPMSVQSAA 253
Query: 231 QEAVQKS 237
E +++
Sbjct: 254 AELARRA 260
>sp|Q8SRP3|TF2B_ENCCU Transcription initiation factor IIB OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU06_1100i PE=3 SV=1
Length = 312
Score = 154 bits (388), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 127/235 (54%), Gaps = 11/235 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATI 125
L L T+I+ G + LS + RG P+R L I +R L TI
Sbjct: 73 YLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
Query: 126 KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185
DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT KEI SV K+EIGR
Sbjct: 131 IDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKREIGR 189
Query: 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
+ I L M T+ + + RFCS+L +N + K A E + + E
Sbjct: 190 CFKLISPHLE-------RMATMSTENIIARFCSDLNLNIKIQKIATEIAKAAHEL 237
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 132/248 (53%), Gaps = 20/248 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CGLV+E ID EWR F +E D RVG P
Sbjct: 30 CPECG-SPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL ++++ A IY+K ++ RGR+ + ++AA LY ACRQ PRT+ EI +
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 207
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR +I ++LGL ++ D++ RFC+ LG++ + K A E +
Sbjct: 208 SR-VDRKEIGRTYRFITRELGL------KLMPTSPADYIPRFCAALGLSGEVQKKAIEII 260
Query: 235 QKSEEFDI 242
+K+EE ++
Sbjct: 261 KKAEEREL 268
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
LGL ++ +A EI KK E+++ + GR + AA LY+A + RT +E+ VA G
Sbjct: 246 LGLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVA-GV 304
Query: 179 TKKEIGRAKEYIVKQLGLE 197
T+ I + + ++LG+E
Sbjct: 305 TEVTIRNRYKELAEKLGIE 323
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D S + VC +CGLVLE ID EWR F N S + RVG PT
Sbjct: 25 CPECN-SANVITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G L + L +WQ R D R L A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + ACLY ACRQE PRT++E+ V
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEV 200
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
A +KEIGR Y+ ++L S+E+ +++ RF S+L ++ + + A+E +
Sbjct: 201 AR-IDQKEIGRTYRYVAQEL------SLEIQPTDPKEYLPRFASDLELSEEVIAKAREII 253
Query: 235 QKSEE 239
S E
Sbjct: 254 DTSAE 258
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUA7 PE=3 SV=1
Length = 357
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 18/251 (7%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLG 120
+NPLL L+T I + G+ ++ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +KD A E YK +++ +G++Q++++A+ + + CR+ + R+ KEI S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRK 204
Query: 181 KEIGRAKEYIVKQLGLETG---------QSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQ 231
KEIG+ I+K + E ++ G A F+ RFCS+LG++ Q AA+
Sbjct: 205 KEIGKTFT-IIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAAE 263
Query: 232 EAVQKSEEFDI 242
+ S++ ++
Sbjct: 264 YIAKHSKDVNV 274
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 20/246 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C TE++ D+ + VC+ CGLV++ + +D EWR F +E D RVG P
Sbjct: 13 VCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPIT 70
Query: 65 PLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 71 YTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELD 130
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
S RLGL ++++ A+ +Y+ D K RGR+ + ++AA LY ACR+ + PRT+ EI
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ TKKE+GR ++ ++L ++++ D++ RF S LG++ +A A E
Sbjct: 191 VSR-VTKKEVGRTYRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEAQSRAIEI 243
Query: 234 VQKSEE 239
++K+ E
Sbjct: 244 IEKAME 249
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ + LGL + RA EI +K ++ + GR + AA LYIA + +T +++
Sbjct: 223 VPRFASELGLSGEAQSRAIEIIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDV 282
Query: 172 CSVANGATKKEIGRAKEYIVKQLGL 196
+A G T+ I + + +QL +
Sbjct: 283 ADIA-GVTEVTIRNRYKELTEQLEM 306
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 20/245 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC++CGLV+E ID EWR F N + RVG PT
Sbjct: 29 CPECGSDN-LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLADGGLSTVI-AKPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LG+ ++++ A+ IY++ + RGR+ + + + LY ACR+E PR+++EI V
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 206
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KEIGR YI ++LGL EM + ++ RFCS L + + A E +
Sbjct: 207 SR-VERKEIGRTYRYISQELGL------EMKPVDPKKYVPRFCSELELTEEVQSKANEII 259
Query: 235 QKSEE 239
+ + E
Sbjct: 260 ETTAE 264
>sp|P29055|TF2B_YEAST Transcription initiation factor IIB OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUA7 PE=1 SV=1
Length = 345
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 12/245 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRLGL 121
NPLL LST I K F + L + Q N D + AF I + D L
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAEL 142
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
+KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + T K
Sbjct: 143 PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKT-K 201
Query: 182 EIGRAKEYIVKQL------GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235
E G+ + L G + M ++ RFCS+LG+ Q +A+ +
Sbjct: 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAK 261
Query: 236 KSEEF 240
K +E
Sbjct: 262 KCKEI 266
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 17/234 (7%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGG 71
TE ++D S G+ VC CG V+E + +DE EWR F + G + RVG P + LL D G
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF--DPGQREKRARVGAPESILLHDKG 70
Query: 72 LSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIK 126
LST I +G L +WQ+R D R L A + ++ L L ++
Sbjct: 71 LSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A +Y++ + RGR+ +A++AAC+Y ACR PRT+ EI V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSR-VDKKEIGRS 189
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN----NQAVKAAQEAVQK 236
+I + L L + + D++ +F LG++ +A++ +EA Q+
Sbjct: 190 FRFIARHLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEAYQR 239
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
+S V K G S F++ L P + + + +D LGL ++ RA E
Sbjct: 178 VSRVDKKEIGRSFRFIARHLN------LTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 ILEEAYQRGLTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++L L+
Sbjct: 291 EKLNLKV 297
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 19/236 (8%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D + RVG PT + D GLST
Sbjct: 32 VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTNTMHDKGLST 90
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVA 123
I + A G LSS+ L +W R D R L A I M+ LGL
Sbjct: 91 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASALGLPD 150
Query: 124 TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183
+++ A+ IY++ + GR+ + + +C+Y A RQ PR++ EI V+ K EI
Sbjct: 151 NVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIADVSR-VEKAEI 209
Query: 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
R Y+V++LGLE + ++ RF S+LG++++A A+E ++ +++
Sbjct: 210 ARTYRYVVRELGLEVAPA------DPESYVPRFASDLGLSDEASHRARELLKTAKD 259
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPT 63
C C TE ++D G+ VC++CG V+E + +DE EWR F E G + R G P
Sbjct: 9 VCPICG-STEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAF--EPGQREKRARTGAPM 65
Query: 64 NPLLADGGLSTVI------AKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTI 112
++ D GLST I N +G + + L WQ R D R L A +
Sbjct: 66 TLMIHDKGLSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSEL 125
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ +L L +K+ A +Y+K +K RGR+ + +++A LY ACR E PRT+ EI
Sbjct: 126 DRMAAQLRLPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIA 185
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
SV+ +KKEIGR+ ++ + LGL + + +++ RF LG++ + K A+E
Sbjct: 186 SVSK-VSKKEIGRSYRFMARGLGLNLRPTSPI------EYVDRFGDALGVSARTKKRAKE 238
Query: 233 AVQKS 237
+ ++
Sbjct: 239 ILNEA 243
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 12/237 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 7 CPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I SG L +WQ+R D R L A + ++ +L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A K
Sbjct: 125 LPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR-VDK 183
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KEIGR+ +I + L L + + D++ +F LG++ + + A E + ++
Sbjct: 184 KEIGRSYRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILDEA 236
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I + + + G++ L+AA LYIA E + RT +E+ VA R KE +
Sbjct: 232 ILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVE 291
Query: 192 K 192
K
Sbjct: 292 K 292
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 12/237 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 7 CPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLG 120
LL D GLST I SG L +WQ+R D R L A + ++ +L
Sbjct: 65 LLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLK 124
Query: 121 LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
L +++ A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A K
Sbjct: 125 LPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR-VDK 183
Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
KEIGR+ +I + L L + + D++ +F LG++ + + A E + ++
Sbjct: 184 KEIGRSYRFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILDEA 236
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVDKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I + + + G++ L+AA LYIA E + RT +E+ VA R KE +
Sbjct: 232 ILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVE 291
Query: 192 K 192
K
Sbjct: 292 K 292
>sp|Q975S1|TF2B_SULTO Transcription initiation factor IIB OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=tfb PE=3
SV=1
Length = 308
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 19/237 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD G+ +C+E G V+E +ID+ EWR F E + RVGGP N + D G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTK-ANRKE 195
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
+ R I+++L + S D++ R S LG++ +K A + ++K++E
Sbjct: 196 VARCYRLILRELDINVPVS------DPKDYVTRIGSLLGLSGSTMKMAIDIIEKAKE 246
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 120/244 (49%), Gaps = 20/244 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ L + +K+ A IY+K Q RGR+ + ++A LY ACR + PRT+ EI SV
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
KKEIGR + + L L S A D++ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 235 QKSE 238
+ +E
Sbjct: 247 RSAE 250
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + ID EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRSY 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 ILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++LG++
Sbjct: 291 EKLGIKV 297
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 20/243 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 15 CPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 72
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 73 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 132
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
S RLGL ++++ A+ +Y+ + K RGR+ + ++AA LY ACR+ PRT+ EI V
Sbjct: 133 DSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIADV 192
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ +KKE+GR ++ ++L + + D++ RF S L ++ A E +
Sbjct: 193 SR-VSKKEVGRTYRFLTREL------HIRLPPTSPIDYVPRFASELNLSGVVQSKAIEII 245
Query: 235 QKS 237
++
Sbjct: 246 NQA 248
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC+ CG V+E + +D EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNRGSNPD---RGLILAFKTIATMSDRLGLVATIKD 127
ST I +G L +WQ+R D R L A + ++ +L L +++
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 128 RANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187
A +Y++ + RGR+ ++++AAC+Y ACR PRT+ EI +A KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRSY 190
Query: 188 EYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKS 237
+I + L L + + D++ +F LG++ + + A E ++++
Sbjct: 191 RFIARNLNLTPKKLF----VKPTDYVNKFADELGLSEKVRRRAIEILEEA 236
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANE 131
++ V K G S F++ +N P + + + +D LGL ++ RA E
Sbjct: 178 IARVEKKEIGRSYRFIA------RNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIE 231
Query: 132 IYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191
I ++ + + G++ L+AA LYIA E + RT +E+ VA R KE +V
Sbjct: 232 ILEEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKE-LV 290
Query: 192 KQLGLET 198
++LG++
Sbjct: 291 EKLGIKV 297
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 19/233 (8%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VC +CGLV++ + +D EWR F +E D RVG P + D GLST+I
Sbjct: 25 DYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITYTIHDKGLSTMID 83
Query: 78 KPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIATMSDRLGLVATIK 126
N A L +WQ + +R L A + S RLGL +++
Sbjct: 84 WRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRDSSRLGLPRSVR 143
Query: 127 DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186
+ A+ +Y++ + K RGR+ + ++AA LY ACR+ + PRT+ EI V+ +KKE+GR
Sbjct: 144 EAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVSR-VSKKEVGRT 202
Query: 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239
++ ++L ++++ D++ RF S LG++ + A E ++ + E
Sbjct: 203 YRFLTREL------NIKLPPTSPVDYVPRFASELGLSGEVQSKAIEIIEMAME 249
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +CK ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TESVCPECKSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 212 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLTLKGEVQSRA 264
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 265 VEILRQAAEREL 276
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 119 LGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178
L L ++ RA EI ++ +++ + GR + AA +YI+ + RT +E+ VA G
Sbjct: 254 LTLKGEVQSRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVA-GV 312
Query: 179 TKKEIGRAKEYIVKQLGLE 197
T+ I + + ++L +E
Sbjct: 313 TEVTIRNRYKELAEKLDIE 331
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTK-ANRKE 196
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L V + D++ R + LG++ + +K A E + K++
Sbjct: 197 VARCYRLLLREL------DVSVPVSDPKDYVTRIANLLGLSGRVMKTAAEIIDKAK 246
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ +++ LGL + A EI K + + G++ L AA +YIA D+ RT KEI
Sbjct: 221 VTRIANLLGLSGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEI 280
Query: 172 CSVA 175
VA
Sbjct: 281 AQVA 284
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 120/244 (49%), Gaps = 20/244 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ L + +++ A IY+K Q RGR+ + ++A LY ACR + PRT+ EI SV
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
KKEIGR + + L L S A D++ RFCS L ++ A E +
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRFCSKLKLSMDTRNKALEIL 246
Query: 235 QKSE 238
+ +E
Sbjct: 247 RDAE 250
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
T+I K A G L +WQ R S+ DR L A + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
++KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTK-ANRKE 196
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R ++++L V + D++ R + LG++ +K A E + K++
Sbjct: 197 VARCYRLLLREL------DVSVPVSDPKDYVTRIANLLGLSGAVMKTAAEIIDKAK 246
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ +++ LGL + A EI K + + G++ L AA +YIA D+ RT KEI
Sbjct: 221 VTRIANLLGLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEI 280
Query: 172 CSVA 175
VA
Sbjct: 281 AQVA 284
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 20/250 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIE 216
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ ++KEIGR +I ++L L+ + + D++ RFCS L + + + E
Sbjct: 217 EVSR-VSRKEIGRTYRFISRELALKLMPTSPI------DYVPRFCSGLNLKGEVQSKSVE 269
Query: 233 AVQKSEEFDI 242
++++ E ++
Sbjct: 270 ILRQASEKEL 279
>sp|P0CW15|TF2B_METMA Transcription initiation factor IIB OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=tfb PE=3 SV=1
Length = 337
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 20/250 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIE 216
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ ++KEIGR +I ++L L+ + + D++ RFCS L + + + E
Sbjct: 217 EVSR-VSRKEIGRTYRFISRELALKLMPTSPI------DYVPRFCSGLNLKGEVQSKSVE 269
Query: 233 AVQKSEEFDI 242
++++ E ++
Sbjct: 270 ILRQASEKEL 279
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 131/250 (52%), Gaps = 20/250 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
M+ LGL T+++ A +Y+K D+ RGR+ + + AA LY ACRQ PRT+ EI
Sbjct: 157 DRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIE 216
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
V+ ++KEIGR +I ++L L+ + + D++ RFCS L + + + E
Sbjct: 217 EVSR-VSRKEIGRTYRFISRELALKLMPTSPI------DYVPRFCSGLNLKGEVQSKSVE 269
Query: 233 AVQKSEEFDI 242
++++ E ++
Sbjct: 270 ILRQASEKEL 279
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 17/250 (6%)
Query: 2 TDAFCSDCKK--HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRV 59
T F +C E+VFD G+ VC+ CGLV E ID EWR F N R
Sbjct: 8 TGKFTEECPACGSAEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRT 66
Query: 60 GGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGR---WQNR----GSNPDRGLILAFKTI 112
G P L D G+ST+I + SG + + R W R GS +R AF +
Sbjct: 67 GEPVKLRLPDKGISTIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSR-ERNFFQAFLEL 125
Query: 113 ATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC 172
++ +L L ++++ A IY+K + RGR +++L A ++ AC++ PRT +EI
Sbjct: 126 ENLASKLQLPESVRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIA 185
Query: 173 SVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232
+ + EI RA + ++L L+ + D + RF S LG++ AQE
Sbjct: 186 EALGVSDENEILRAYRVLQRRLNLKQKPT------EPSDHLPRFASKLGVSENVQAKAQE 239
Query: 233 AVQKSEEFDI 242
++K++E I
Sbjct: 240 IIEKAKEKGI 249
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
+ + +LG+ ++ +A EI +K +++ + G+ + AA LYIA E + RT KEI
Sbjct: 220 LPRFASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEI 279
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLE 197
VA R KE I + LG+E
Sbjct: 280 AEVARVTEVTIRNRYKE-ICEALGIE 304
>sp|Q9UWN6|TF2B_SULAC Transcription initiation factor IIB OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=tfb PE=3 SV=2
Length = 307
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 19/236 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVI-AKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLV 122
TVI K A G L +WQ R S+ DR L A + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 123 ATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
+KD A IY+K ++ RGR+ ++++AA +Y ACR+ RT+ EI A +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTK-ANRKE 194
Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238
+ R I+++L +E S D++ R + L ++ +K A E ++K++
Sbjct: 195 VARCYRLILRELDIEVPVS------DPKDYVTRIGTLLSLSGITMKHAAEIIEKAK 244
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 19/235 (8%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
T++VF+ G+ VC+ CG ++ +D+ EWR F E + R G P +P L D GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVI-AKPNGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRLGL 121
STVI + A G+ LS L +WQ R + DR L +A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 122 VATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 181
IK+ A IY+K ++ RGR+ ++++AA +Y ACR +PRT+ EI +K
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLE-VNRK 194
Query: 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK 236
E+ R I K+L L+ + A D + R L + ++ A + ++K
Sbjct: 195 EVARCYRLITKELKLKVPIA------DAMDHIPRIGEALKLRGDIIEYAMKIMEK 243
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 167
A I + + L L I + A +I +K++ + G++ + AA +YIA Q+ + RT
Sbjct: 216 AMDHIPRIGEALKLRGDIIEYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRT 275
Query: 168 VKEICSVANGATKKEIGRAKEYIVKQL 194
KEI +VA G T+ + + I+K L
Sbjct: 276 QKEIANVA-GVTEVTVRNRYKEIMKVL 301
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 130/252 (51%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G
Sbjct: 7 TPKRCPECNSE-HLIRDYEHGELICADCGAVIEDAYIDQGPEWRAFDSDQ-DERRARTGS 64
Query: 62 PTNPLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P L D GL+T I+ N G+ + + +W R + +R L LA +
Sbjct: 65 PMTYLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQ 124
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ + +LG+ IK+ A IY+K ++ RGR+ ++++ A +Y ACR+ + PRT+ E
Sbjct: 125 LLNDIGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDE 184
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I S A+ KK+IG+A ++ K+L L + ++ +FC+ L ++ QA+ +
Sbjct: 185 I-SKASEVNKKKIGKAYRHLAKELDLNLKPTTPFS------YISQFCNKLDLDKQAIVIS 237
Query: 231 QEAVQKSEEFDI 242
++ V+++ I
Sbjct: 238 EDIVRQAMSMGI 249
>sp|Q9HR45|TF2B4_HALSA Transcription initiation factor IIB 4 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbD PE=3
SV=1
Length = 328
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 21/232 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + ++V D G+T C ECGLV+E ID EWR F N ++ RVG P
Sbjct: 29 DHGCPEC--NGDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAF-NAQEQDEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I + A G LS L +W R ++ +R L A
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEI 171
I M+ GL ++++ A+ IY++ + GR+ + + + LY A RQ + PR++ E+
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 172 CSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
SV+ + EI R Y+ ++L S+E+ ++ RFCS+L ++
Sbjct: 206 ASVSR-VDRGEIARTYRYVAREL------SLEVAPTDPASYVPRFCSDLELS 250
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 21/249 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
M+ LGL +++ A+ IY++ + GR+ + + + LY + R PR++ E+
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
V+ K E+ R YIV++L L E+ ++ RF S LG++++A + A++
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKL------EIKPADPEQYVPRFASELGLSDEAERQARQL 265
Query: 234 VQKSEEFDI 242
++ ++E I
Sbjct: 266 LRDAKETGI 274
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 21/244 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G++VC +CGLV+E + ID EWR F N + ++ RVG PT
Sbjct: 32 CPECGG--QVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSV 174
M+ LGL +++ A+ IY++ + GR+ + + A LY + RQ PR++ E+ +V
Sbjct: 149 MASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVANV 208
Query: 175 ANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAV 234
+ + E R YIV++L LE + ++ RF S+L + ++ + ++E +
Sbjct: 209 SR-IDEMEFKRTYRYIVRELSLEVAPA------DPAQYVPRFASDLDLPDEVERRSRELI 261
Query: 235 QKSE 238
++
Sbjct: 262 SNAQ 265
>sp|Q979P7|TF2B2_THEVO Transcription initiation factor IIB 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbB PE=3 SV=1
Length = 313
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 131/249 (52%), Gaps = 22/249 (8%)
Query: 6 CSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H+E ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G P
Sbjct: 17 CPEC--HSEHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAFDSDQ-DERRARTGSPMT 73
Query: 65 PLLADGGLSTVIAKPNG-ASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
L D GL+T I+ N G+ + + +W R + +R L LA + +
Sbjct: 74 YLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLN 133
Query: 114 TMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173
+ +LG+ IK+ + IY+K ++ RGR+ ++++ A +Y ACR+ + PRT+ EI
Sbjct: 134 DIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIAK 193
Query: 174 VANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEA 233
A+ KK+IG+A ++ K+L L + ++ +FC+ L ++ QA+ +++
Sbjct: 194 -ASEVNKKKIGKAYRHLAKELDLNLRPTTPFS------YIAQFCNKLDLDKQAIVISEDI 246
Query: 234 VQKSEEFDI 242
V+++ I
Sbjct: 247 VRQAMSMGI 255
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 127/252 (50%), Gaps = 20/252 (7%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+ C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 37 VQSVCPECGSR-QLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 170
+ M+ LGL +++ A +Y+ D+ RGR+ + + AA LY ACRQ PRT+ E
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 171 ICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230
I V+ ++KEIGR +I ++LGL+ + + D++ RFCS L + + A
Sbjct: 215 IAEVSR-VSRKEIGRTYRFISRELGLKLLPTSPI------DYVPRFCSGLNLKGEVQSRA 267
Query: 231 QEAVQKSEEFDI 242
E ++++ E ++
Sbjct: 268 VEILRQAGEREL 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,237,836
Number of Sequences: 539616
Number of extensions: 3788155
Number of successful extensions: 10468
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 10150
Number of HSP's gapped (non-prelim): 185
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)