Query 025983
Match_columns 245
No_of_seqs 184 out of 1105
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 22:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 8.6E-60 2.9E-64 415.3 13.6 241 3-245 21-273 (345)
2 3k7a_M Transcription initiatio 100.0 1.4E-55 4.8E-60 389.3 8.8 236 3-242 21-268 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 3.2E-29 1.1E-33 205.1 18.0 137 99-242 3-141 (200)
4 1c9b_A General transcription f 99.9 4.2E-26 1.4E-30 187.5 18.7 135 101-242 1-135 (207)
5 3k1f_M Transcription initiatio 99.8 1.7E-20 5.7E-25 145.1 3.6 66 2-67 20-87 (197)
6 1zp2_A RNA polymerase II holoe 99.7 6.6E-17 2.3E-21 135.1 17.9 131 105-241 28-166 (235)
7 1dl6_A Transcription factor II 99.7 8.1E-19 2.8E-23 114.1 4.4 47 3-50 11-57 (58)
8 1ais_B TFB TFIIB, protein (tra 99.7 7.3E-16 2.5E-20 125.6 11.9 90 107-197 107-196 (200)
9 1pft_A TFIIB, PFTFIIBN; N-term 99.6 3.1E-16 1E-20 99.3 4.8 44 4-48 6-49 (50)
10 2ivx_A Cyclin-T2; transcriptio 99.6 6E-14 2.1E-18 118.5 18.5 127 106-238 32-175 (257)
11 2i53_A Cyclin K; cell cycle, t 99.6 5.9E-14 2E-18 118.6 16.9 129 106-241 42-187 (258)
12 3rgf_B Cyclin-C; protein kinas 99.6 5.8E-14 2E-18 120.4 15.6 129 106-240 44-188 (285)
13 2pk2_A Cyclin-T1, protein TAT; 99.5 1E-13 3.4E-18 122.5 12.5 126 106-238 39-182 (358)
14 1c9b_A General transcription f 99.5 1.1E-13 3.6E-18 113.3 10.6 91 106-197 100-190 (207)
15 1jkw_A Cyclin H; cell cycle, c 99.5 7.9E-13 2.7E-17 115.2 16.1 127 106-239 58-200 (323)
16 2b9r_A Human cyclin B1; cell c 99.5 1.6E-12 5.3E-17 110.6 17.5 128 106-240 39-169 (269)
17 2cch_B Cyclin A2, cyclin-A; co 99.4 4E-12 1.4E-16 107.6 14.9 126 106-238 40-169 (260)
18 4bbr_M Transcription initiatio 99.4 3.4E-14 1.2E-18 124.8 0.0 90 106-196 233-322 (345)
19 2w96_A G1/S-specific cyclin-D1 99.4 2.6E-11 8.9E-16 103.1 17.2 125 106-237 58-189 (271)
20 1g3n_C V-cyclin; cyclin-depend 99.3 6.1E-11 2.1E-15 100.0 14.1 126 106-238 52-184 (257)
21 2f2c_A Cyclin homolog, V-cycli 99.2 1.7E-10 5.9E-15 97.1 13.0 125 106-237 53-184 (254)
22 3k7a_M Transcription initiatio 99.2 1.5E-12 5.2E-17 114.4 0.0 88 107-195 234-321 (345)
23 1w98_B Cyclin E, G1/S-specific 99.1 7.1E-10 2.4E-14 94.8 13.5 112 106-224 51-166 (283)
24 3g33_B CCND3 protein; Ser/Thr 99.1 2.2E-09 7.4E-14 92.8 13.9 125 106-237 72-203 (306)
25 1f5q_B Gamma herpesvirus cycli 98.7 4.8E-07 1.6E-11 75.9 15.8 124 106-236 50-180 (252)
26 3h4c_A Transcription factor TF 98.2 3.6E-06 1.2E-10 66.9 6.5 113 109-224 16-131 (260)
27 1zp2_A RNA polymerase II holoe 98.0 1E-05 3.5E-10 66.9 7.5 88 107-196 133-220 (235)
28 2cch_B Cyclin A2, cyclin-A; co 98.0 2E-05 6.7E-10 66.2 8.6 88 107-195 138-227 (260)
29 2b9r_A Human cyclin B1; cell c 98.0 1E-05 3.5E-10 68.3 6.2 87 107-194 137-223 (269)
30 2w96_A G1/S-specific cyclin-D1 97.8 7.6E-05 2.6E-09 63.0 8.7 90 107-197 156-258 (271)
31 3rgf_B Cyclin-C; protein kinas 97.8 6.6E-05 2.2E-09 63.9 7.9 86 107-195 156-241 (285)
32 2i53_A Cyclin K; cell cycle, t 97.7 8.3E-05 2.8E-09 62.1 8.2 90 107-196 150-251 (258)
33 2ivx_A Cyclin-T2; transcriptio 97.7 0.00017 6E-09 60.2 9.0 89 107-195 145-239 (257)
34 2f2c_A Cyclin homolog, V-cycli 97.6 0.00025 8.4E-09 59.2 9.3 87 108-195 152-247 (254)
35 1g3n_C V-cyclin; cyclin-depend 97.5 0.00029 9.8E-09 58.9 8.1 88 107-195 150-247 (257)
36 3m03_A ORC6, origin recognitio 97.2 0.0021 7.1E-08 45.1 8.4 80 112-194 6-91 (95)
37 2pk2_A Cyclin-T1, protein TAT; 97.0 0.00039 1.3E-08 61.0 4.1 90 107-196 152-247 (358)
38 3g33_B CCND3 protein; Ser/Thr 97.0 0.0025 8.7E-08 54.6 8.9 87 108-195 171-266 (306)
39 1qxf_A GR2, 30S ribosomal prot 96.9 0.00048 1.6E-08 44.6 2.2 31 4-35 8-38 (66)
40 2js4_A UPF0434 protein BB2007; 96.8 0.00094 3.2E-08 44.4 3.4 30 2-33 7-36 (70)
41 3j20_W 30S ribosomal protein S 96.8 0.0006 2E-08 43.9 2.2 31 4-35 16-46 (63)
42 2jny_A Uncharacterized BCR; st 96.7 0.0011 3.9E-08 43.5 3.3 30 2-33 9-38 (67)
43 2jr6_A UPF0434 protein NMA0874 96.7 0.0011 3.8E-08 43.7 3.2 30 2-33 7-36 (68)
44 1vq8_Z 50S ribosomal protein L 96.7 0.00067 2.3E-08 46.6 2.1 31 4-36 28-58 (83)
45 2pk7_A Uncharacterized protein 96.6 0.0011 3.9E-08 43.8 2.4 29 3-33 8-36 (69)
46 2hf1_A Tetraacyldisaccharide-1 96.5 0.001 3.4E-08 44.0 1.9 29 3-33 8-36 (68)
47 2xzm_6 RPS27E; ribosome, trans 96.5 0.0011 3.8E-08 44.7 2.0 31 4-35 33-63 (81)
48 2r7g_A PP110, retinoblastoma-a 96.5 0.009 3.1E-07 51.8 8.2 69 105-173 215-286 (347)
49 3u5c_b RP61, YS20, 40S ribosom 96.4 0.0012 4.1E-08 44.6 1.9 31 4-35 35-65 (82)
50 4ell_A Retinoblastoma-associat 96.4 0.0093 3.2E-07 52.8 8.0 68 106-173 280-350 (411)
51 1w98_B Cyclin E, G1/S-specific 96.4 0.014 4.8E-07 49.3 8.8 80 107-194 150-240 (283)
52 3iz6_X 40S ribosomal protein S 96.2 0.0015 5.2E-08 44.5 1.5 31 4-35 37-67 (86)
53 4elj_A Retinoblastoma-associat 96.0 0.021 7.3E-07 53.4 8.7 69 105-173 524-595 (656)
54 2qdj_A Retinoblastoma-associat 96.0 0.032 1.1E-06 47.6 9.1 71 111-183 5-80 (304)
55 3j20_Y 30S ribosomal protein S 95.8 0.0062 2.1E-07 37.6 2.9 28 4-33 20-47 (50)
56 1jkw_A Cyclin H; cell cycle, c 95.3 0.043 1.5E-06 47.2 7.4 88 108-195 163-260 (323)
57 2akl_A PHNA-like protein PA012 95.3 0.039 1.3E-06 40.5 5.9 28 3-33 27-54 (138)
58 2k4x_A 30S ribosomal protein S 94.9 0.013 4.6E-07 36.8 2.3 28 3-32 18-45 (55)
59 4elj_A Retinoblastoma-associat 94.2 0.33 1.1E-05 45.5 10.7 71 111-183 7-82 (656)
60 2kpi_A Uncharacterized protein 94.0 0.045 1.5E-06 34.5 3.2 27 3-33 10-38 (56)
61 1k81_A EIF-2-beta, probable tr 93.4 0.029 1E-06 32.0 1.3 29 5-33 2-31 (36)
62 6rxn_A Rubredoxin; electron tr 93.3 0.021 7E-07 34.5 0.7 27 1-31 2-38 (46)
63 1e8j_A Rubredoxin; iron-sulfur 92.8 0.04 1.4E-06 34.2 1.4 19 1-23 1-19 (52)
64 4rxn_A Rubredoxin; electron tr 92.6 0.047 1.6E-06 34.1 1.6 18 1-22 1-18 (54)
65 1nui_A DNA primase/helicase; z 92.5 0.077 2.6E-06 43.9 3.2 28 4-32 15-42 (255)
66 3h0g_I DNA-directed RNA polyme 92.4 0.098 3.3E-06 37.9 3.3 31 2-34 3-37 (113)
67 1twf_I B12.6, DNA-directed RNA 92.3 0.068 2.3E-06 39.3 2.4 34 1-34 2-37 (122)
68 2k5r_A Uncharacterized protein 92.2 0.062 2.1E-06 37.7 2.0 31 1-33 6-63 (97)
69 1twf_L ABC10-alpha, DNA-direct 91.9 0.049 1.7E-06 36.0 1.0 28 4-34 29-57 (70)
70 1qyp_A RNA polymerase II; tran 91.8 0.13 4.5E-06 32.3 3.0 31 4-35 16-55 (57)
71 3j21_i 50S ribosomal protein L 91.7 0.093 3.2E-06 35.7 2.3 32 3-36 35-66 (83)
72 3jyw_9 60S ribosomal protein L 91.3 0.11 3.8E-06 34.3 2.2 31 4-36 27-57 (72)
73 2lnb_A Z-DNA-binding protein 1 91.2 0.32 1.1E-05 32.4 4.4 45 152-197 21-65 (80)
74 3iz5_m 60S ribosomal protein L 91.0 0.12 4.1E-06 35.8 2.3 31 3-35 36-66 (92)
75 1ffk_W Ribosomal protein L37AE 91.0 0.1 3.5E-06 34.6 1.8 31 4-36 28-58 (73)
76 1f5q_B Gamma herpesvirus cycli 90.9 1.6 5.6E-05 35.8 9.6 85 108-195 149-241 (252)
77 3cc2_Z 50S ribosomal protein L 90.6 0.12 4E-06 37.3 2.1 31 4-36 61-91 (116)
78 3izc_m 60S ribosomal protein R 90.5 0.14 4.7E-06 35.5 2.2 31 3-35 36-66 (92)
79 4a17_Y RPL37A, 60S ribosomal p 90.2 0.14 4.7E-06 36.1 2.1 30 4-35 37-66 (103)
80 2apo_B Ribosome biogenesis pro 89.9 0.17 5.9E-06 32.2 2.1 25 2-34 5-29 (60)
81 2pmi_B PHO85 cyclin PHO80, ami 89.7 8.3 0.00028 32.4 14.6 104 108-219 77-184 (293)
82 3qt1_I DNA-directed RNA polyme 89.6 0.18 6.1E-06 37.6 2.4 29 3-33 24-56 (133)
83 2v3b_B Rubredoxin 2, rubredoxi 89.1 0.13 4.4E-06 32.2 1.1 19 1-23 1-19 (55)
84 1tfi_A Transcriptional elongat 88.2 0.35 1.2E-05 29.5 2.6 30 3-32 9-46 (50)
85 1gnf_A Transcription factor GA 88.2 0.16 5.3E-06 30.6 1.0 32 3-34 4-36 (46)
86 1dxg_A Desulforedoxin; non-hem 88.1 0.26 8.8E-06 27.9 1.9 27 3-32 6-32 (36)
87 3ga8_A HTH-type transcriptiona 88.0 0.29 1E-05 32.7 2.4 30 4-34 3-47 (78)
88 1dx8_A Rubredoxin; electron tr 87.8 0.19 6.4E-06 33.1 1.3 7 4-10 8-14 (70)
89 2kn9_A Rubredoxin; metalloprot 87.3 0.19 6.6E-06 34.0 1.1 16 21-36 25-40 (81)
90 3j21_g 50S ribosomal protein L 87.1 0.18 6.1E-06 31.0 0.8 23 4-32 15-37 (51)
91 1gh9_A 8.3 kDa protein (gene M 87.1 0.31 1.1E-05 32.1 2.0 27 4-34 5-31 (71)
92 1wii_A Hypothetical UPF0222 pr 86.3 0.38 1.3E-05 32.9 2.2 32 4-35 24-59 (85)
93 2vut_I AREA, nitrogen regulato 84.8 0.28 9.5E-06 29.0 0.8 31 4-34 2-33 (43)
94 3lwf_A LIN1550 protein, putati 84.8 2.3 7.9E-05 32.4 6.3 45 147-192 26-70 (159)
95 1s24_A Rubredoxin 2; electron 84.0 0.27 9.2E-06 33.7 0.6 16 21-36 33-48 (87)
96 3u50_C Telomerase-associated p 83.8 0.6 2E-05 36.3 2.6 25 5-32 44-68 (172)
97 2jt1_A PEFI protein; solution 83.7 1.7 5.9E-05 28.9 4.5 30 163-193 22-51 (77)
98 3o9x_A Uncharacterized HTH-typ 83.5 0.43 1.5E-05 35.0 1.6 31 3-34 2-47 (133)
99 3t8r_A Staphylococcus aureus C 82.2 1.6 5.4E-05 32.6 4.4 43 149-192 12-54 (143)
100 2k9s_A Arabinose operon regula 82.2 6.9 0.00024 27.0 7.6 40 150-190 5-44 (107)
101 2aus_D NOP10, ribosome biogene 82.2 0.61 2.1E-05 29.6 1.7 25 2-34 4-28 (60)
102 2heo_A Z-DNA binding protein 1 81.9 2.4 8E-05 27.2 4.6 32 161-193 21-52 (67)
103 4gat_A Nitrogen regulatory pro 81.9 0.37 1.3E-05 31.3 0.6 33 3-35 9-42 (66)
104 3lsg_A Two-component response 81.9 8.7 0.0003 26.2 8.0 40 150-190 4-43 (103)
105 2y75_A HTH-type transcriptiona 81.8 3.9 0.00013 29.5 6.4 41 151-192 12-52 (129)
106 2kae_A GATA-type transcription 80.6 0.39 1.3E-05 31.6 0.4 29 4-33 9-40 (71)
107 2ct7_A Ring finger protein 31; 80.2 1.1 3.9E-05 30.3 2.7 27 5-33 27-53 (86)
108 1x3u_A Transcriptional regulat 79.3 7 0.00024 25.1 6.5 33 164-197 30-62 (79)
109 3dfx_A Trans-acting T-cell-spe 79.1 0.43 1.5E-05 30.6 0.2 33 4-36 8-41 (63)
110 2kao_A Methionine-R-sulfoxide 78.9 1.7 5.8E-05 31.7 3.3 31 19-49 16-48 (124)
111 3oou_A LIN2118 protein; protei 78.7 9.9 0.00034 26.2 7.5 40 149-190 6-45 (108)
112 1twf_I B12.6, DNA-directed RNA 78.3 2.1 7.2E-05 31.1 3.8 31 4-34 73-111 (122)
113 1ylf_A RRF2 family protein; st 78.3 4.2 0.00014 30.3 5.6 43 148-192 14-56 (149)
114 2kv1_A Methionine-R-sulfoxide 77.2 1.2 4.3E-05 32.4 2.2 31 20-50 17-49 (124)
115 3h0g_L DNA-directed RNA polyme 77.1 1.4 4.7E-05 28.2 2.2 27 4-33 22-48 (63)
116 2jpc_A SSRB; DNA binding prote 77.0 3.6 0.00012 25.2 4.2 32 165-197 13-44 (61)
117 1yk4_A Rubredoxin, RD; electro 76.8 1 3.6E-05 27.6 1.5 12 24-35 3-14 (52)
118 1ug2_A 2610100B20RIK gene prod 76.6 7.6 0.00026 26.6 5.8 40 155-195 44-85 (95)
119 3mn2_A Probable ARAC family tr 76.4 14 0.00047 25.4 7.7 39 150-190 4-42 (108)
120 2zjr_Z 50S ribosomal protein L 75.4 1.4 4.7E-05 27.9 1.8 27 4-37 31-57 (60)
121 3ulq_B Transcriptional regulat 74.8 4.3 0.00015 27.5 4.5 32 165-197 44-75 (90)
122 1vk6_A NADH pyrophosphatase; 1 74.7 2.1 7.3E-05 35.5 3.4 30 3-34 107-136 (269)
123 2g2k_A EIF-5, eukaryotic trans 74.6 0.97 3.3E-05 34.9 1.1 29 5-33 98-129 (170)
124 3mao_A Methionine-R-sulfoxide 74.4 1.2 4.2E-05 31.5 1.5 31 19-49 9-41 (105)
125 2e9h_A EIF-5, eukaryotic trans 74.0 1.4 4.6E-05 33.7 1.8 30 4-33 104-136 (157)
126 2fiy_A Protein FDHE homolog; F 73.7 1.9 6.5E-05 36.7 2.8 30 3-32 182-217 (309)
127 1tty_A Sigma-A, RNA polymerase 73.4 5.8 0.0002 26.5 4.8 32 164-196 37-68 (87)
128 3v2d_5 50S ribosomal protein L 73.1 1.2 4.1E-05 28.2 1.1 24 4-34 31-54 (60)
129 2jrp_A Putative cytoplasmic pr 72.7 2.3 7.7E-05 28.7 2.4 29 1-34 1-29 (81)
130 1l1o_C Replication protein A 7 72.4 1.8 6.3E-05 33.7 2.3 27 5-34 45-73 (181)
131 2jne_A Hypothetical protein YF 72.4 1.9 6.6E-05 30.0 2.0 28 1-33 31-58 (101)
132 3oio_A Transcriptional regulat 72.3 17 0.00057 25.2 7.3 40 149-190 8-47 (113)
133 4e2x_A TCAB9; kijanose, tetron 72.1 1.6 5.5E-05 38.2 2.0 15 24-38 54-68 (416)
134 2k8d_A Peptide methionine sulf 72.1 2 6.8E-05 32.4 2.3 32 19-50 57-90 (151)
135 2l1u_A MSRB2, methionine-R-sul 72.0 1.9 6.6E-05 32.2 2.1 32 19-50 33-66 (143)
136 2fiy_A Protein FDHE homolog; F 71.9 3.1 0.00011 35.3 3.7 31 4-34 223-264 (309)
137 1qgp_A Protein (double strande 71.9 6.8 0.00023 25.8 4.7 30 163-193 29-58 (77)
138 2kdx_A HYPA, hydrogenase/ureas 71.7 1.5 5.3E-05 31.6 1.6 21 14-34 64-84 (119)
139 2zkr_2 60S ribosomal protein L 71.1 1.5 5.1E-05 30.4 1.3 22 5-31 18-39 (97)
140 1qbj_A Protein (double-strande 70.9 6.2 0.00021 26.4 4.4 29 164-193 26-54 (81)
141 3cxk_A Methionine-R-sulfoxide 70.3 1.9 6.4E-05 33.0 1.8 32 19-50 69-102 (164)
142 1j1v_A Chromosomal replication 70.2 8.9 0.00031 26.3 5.2 50 143-195 24-76 (94)
143 1je8_A Nitrate/nitrite respons 70.0 9.4 0.00032 25.1 5.2 32 165-197 36-67 (82)
144 1fse_A GERE; helix-turn-helix 69.9 17 0.0006 22.7 6.7 32 165-197 26-57 (74)
145 1u5k_A Hypothetical protein; O 69.7 3.1 0.0001 33.8 3.1 28 4-31 151-178 (244)
146 3e0o_A Peptide methionine sulf 69.7 2 6.9E-05 32.2 1.8 31 19-49 38-70 (144)
147 3k69_A Putative transcription 69.2 3.4 0.00012 31.4 3.1 41 150-192 14-54 (162)
148 3oou_A LIN2118 protein; protei 68.5 25 0.00087 24.0 7.7 72 112-196 24-98 (108)
149 3e6c_C CPRK, cyclic nucleotide 68.4 18 0.00063 28.5 7.6 29 164-193 176-204 (250)
150 2p7v_B Sigma-70, RNA polymeras 68.2 7.7 0.00026 24.4 4.3 32 164-196 24-55 (68)
151 3cng_A Nudix hydrolase; struct 68.1 3.3 0.00011 32.0 2.9 28 3-31 3-33 (189)
152 3hcg_A Peptide methionine sulf 68.0 2 7E-05 32.2 1.5 31 19-49 39-71 (146)
153 4esj_A Type-2 restriction enzy 67.9 2.4 8.3E-05 34.4 2.0 29 4-33 35-66 (257)
154 1bl0_A Protein (multiple antib 66.9 19 0.00066 25.6 6.8 43 146-190 9-51 (129)
155 3hcj_A MSRB, peptide methionin 66.8 2.4 8.1E-05 32.1 1.7 31 19-49 46-78 (154)
156 1ovx_A ATP-dependent CLP prote 66.4 2.5 8.7E-05 27.3 1.5 29 3-33 18-50 (67)
157 3eus_A DNA-binding protein; st 66.1 17 0.00058 23.8 5.9 55 162-232 24-78 (86)
158 3c57_A Two component transcrip 66.1 9.1 0.00031 26.0 4.6 31 166-197 43-73 (95)
159 1p4w_A RCSB; solution structur 65.7 9.4 0.00032 26.4 4.6 32 165-197 49-80 (99)
160 2jmo_A Parkin; IBR, E3 ligase, 65.6 4.2 0.00014 27.1 2.6 31 2-34 24-61 (80)
161 1vzi_A Desulfoferrodoxin; ferr 65.6 2.8 9.6E-05 30.7 1.9 28 4-34 8-35 (126)
162 1d0q_A DNA primase; zinc-bindi 65.6 4.7 0.00016 28.2 3.0 26 5-30 39-65 (103)
163 3r0a_A Putative transcriptiona 65.5 11 0.00037 27.0 5.1 37 155-192 31-68 (123)
164 3b02_A Transcriptional regulat 65.0 16 0.00054 27.7 6.3 29 164-193 138-166 (195)
165 2xi8_A Putative transcription 64.9 16 0.00053 22.1 5.2 46 164-225 13-58 (66)
166 1ku3_A Sigma factor SIGA; heli 64.8 11 0.00038 24.0 4.6 31 164-195 29-59 (73)
167 2ds5_A CLPX, ATP-dependent CLP 64.3 3 0.0001 25.4 1.5 26 3-30 11-40 (51)
168 1u8b_A ADA polyprotein; protei 64.2 15 0.00053 26.3 5.8 38 163-215 91-128 (133)
169 2r1j_L Repressor protein C2; p 63.9 17 0.00057 22.1 5.3 47 164-226 17-63 (68)
170 2htj_A P fimbrial regulatory p 63.8 19 0.00064 23.4 5.7 29 164-193 13-41 (81)
171 4hc9_A Trans-acting T-cell-spe 63.2 2.4 8.1E-05 30.6 1.0 31 4-34 6-37 (115)
172 3mkl_A HTH-type transcriptiona 62.5 28 0.00095 24.3 6.8 39 149-189 8-46 (120)
173 3la7_A Global nitrogen regulat 61.8 19 0.00066 28.3 6.5 30 163-193 191-220 (243)
174 4hc9_A Trans-acting T-cell-spe 61.5 2.6 8.8E-05 30.4 1.0 13 21-33 78-90 (115)
175 1zyb_A Transcription regulator 61.1 24 0.00083 27.5 7.0 29 164-193 185-213 (232)
176 2rnj_A Response regulator prot 60.9 9 0.00031 25.7 3.7 32 165-197 44-75 (91)
177 3bvo_A CO-chaperone protein HS 60.9 3.5 0.00012 32.9 1.8 28 4-34 11-38 (207)
178 1uxc_A FRUR (1-57), fructose r 60.8 8.5 0.00029 24.4 3.3 50 166-225 1-50 (65)
179 3dv8_A Transcriptional regulat 60.6 18 0.00063 27.6 6.1 29 164-193 168-196 (220)
180 1t6s_A Conserved hypothetical 59.7 21 0.00071 27.2 5.9 84 149-238 10-104 (162)
181 2o8x_A Probable RNA polymerase 59.6 14 0.00047 22.9 4.3 30 165-195 31-60 (70)
182 2con_A RUH-035 protein, NIN on 59.4 4.1 0.00014 27.3 1.6 14 1-15 28-41 (79)
183 3pvv_A Chromosomal replication 59.3 19 0.00064 25.1 5.2 51 143-196 28-80 (101)
184 1zug_A Phage 434 CRO protein; 59.3 12 0.00042 23.0 4.0 45 164-225 15-59 (71)
185 3hug_A RNA polymerase sigma fa 59.3 13 0.00043 24.9 4.3 28 166-194 54-81 (92)
186 2d1h_A ST1889, 109AA long hypo 59.3 9.3 0.00032 25.8 3.6 29 163-192 34-62 (109)
187 4gop_C Putative uncharacterize 58.9 5.5 0.00019 35.4 2.9 27 5-34 310-338 (444)
188 2gau_A Transcriptional regulat 58.7 24 0.00083 27.3 6.5 29 164-193 179-207 (232)
189 1xd7_A YWNA; structural genomi 58.5 27 0.00093 25.6 6.4 42 147-192 8-49 (145)
190 2b5a_A C.BCLI; helix-turn-heli 58.1 23 0.0008 22.1 5.3 46 164-225 22-67 (77)
191 2fmy_A COOA, carbon monoxide o 57.0 20 0.0007 27.5 5.8 29 164-193 166-194 (220)
192 3p2a_A Thioredoxin 2, putative 56.7 4.6 0.00016 29.4 1.7 33 4-36 6-38 (148)
193 1adr_A P22 C2 repressor; trans 56.6 26 0.00088 21.8 5.3 46 164-225 17-62 (76)
194 2oz6_A Virulence factor regula 56.2 17 0.00059 27.5 5.2 28 164-192 163-190 (207)
195 2lk0_A RNA-binding protein 5; 56.2 4.5 0.00015 22.0 1.2 14 20-33 2-15 (32)
196 3q87_A Putative uncharacterize 56.0 2.4 8.2E-05 31.0 0.0 17 18-34 94-110 (125)
197 3e97_A Transcriptional regulat 55.8 20 0.00067 27.8 5.5 45 148-193 150-202 (231)
198 3fx3_A Cyclic nucleotide-bindi 55.7 20 0.0007 27.8 5.6 47 163-212 176-222 (237)
199 1r69_A Repressor protein CI; g 55.6 22 0.00074 21.6 4.7 45 164-225 13-57 (69)
200 2bl8_A Enterocine A immunity p 55.6 40 0.0014 23.5 6.2 36 207-242 45-89 (103)
201 3p8b_A DNA-directed RNA polyme 55.5 3.1 0.00011 27.9 0.5 11 1-11 21-31 (81)
202 2l8n_A Transcriptional repress 55.5 6.1 0.00021 25.3 1.9 47 164-225 8-56 (67)
203 2fnf_X Putative RAS effector N 55.4 8.9 0.00031 24.9 2.8 29 3-37 35-63 (72)
204 3bro_A Transcriptional regulat 55.4 28 0.00097 24.5 6.0 38 155-193 40-77 (141)
205 3a43_A HYPD, hydrogenase nicke 55.4 3 0.0001 31.0 0.5 21 14-34 61-81 (139)
206 2k9q_A Uncharacterized protein 55.3 33 0.0011 21.6 5.7 46 164-225 14-59 (77)
207 3ryp_A Catabolite gene activat 54.9 22 0.00074 27.0 5.5 29 164-193 166-194 (210)
208 1u78_A TC3 transposase, transp 54.9 17 0.00059 25.9 4.7 70 112-189 25-102 (141)
209 3f6w_A XRE-family like protein 54.9 24 0.00083 22.5 5.0 46 164-225 26-71 (83)
210 2f9i_B Acetyl-coenzyme A carbo 54.9 1.5 5.1E-05 36.9 -1.5 40 4-48 31-80 (285)
211 2zcw_A TTHA1359, transcription 54.8 19 0.00064 27.3 5.1 29 164-193 145-173 (202)
212 1xn7_A Hypothetical protein YH 54.7 19 0.00063 23.8 4.3 30 163-193 14-43 (78)
213 3omt_A Uncharacterized protein 54.6 18 0.00061 22.6 4.2 46 164-225 20-65 (73)
214 1vfy_A Phosphatidylinositol-3- 54.6 8.6 0.00029 25.0 2.6 31 2-36 10-40 (73)
215 3b7h_A Prophage LP1 protein 11 54.1 23 0.00077 22.2 4.7 47 164-225 19-65 (78)
216 1q1h_A TFE, transcription fact 53.9 24 0.00083 24.2 5.2 30 162-192 30-59 (110)
217 3dkw_A DNR protein; CRP-FNR, H 53.8 17 0.00057 28.1 4.7 30 163-193 176-205 (227)
218 3k2z_A LEXA repressor; winged 53.4 22 0.00075 27.5 5.3 34 158-192 17-50 (196)
219 2pg4_A Uncharacterized protein 52.9 35 0.0012 22.6 5.7 67 160-239 25-92 (95)
220 4ayb_P DNA-directed RNA polyme 52.9 7.8 0.00027 23.1 1.9 33 1-33 1-33 (48)
221 2ict_A Antitoxin HIGA; helix-t 52.3 38 0.0013 22.3 5.8 45 165-225 21-65 (94)
222 1rfh_A RAS association (ralgds 52.1 9.6 0.00033 23.6 2.4 26 4-35 23-48 (59)
223 1j5y_A Transcriptional regulat 51.9 29 0.001 26.6 5.8 35 160-196 31-65 (187)
224 2wus_R RODZ, putative uncharac 51.7 54 0.0019 22.9 6.8 52 161-225 16-70 (112)
225 2kpj_A SOS-response transcript 51.5 39 0.0013 22.3 5.8 49 161-225 18-66 (94)
226 3s8q_A R-M controller protein; 51.2 35 0.0012 21.7 5.3 47 163-225 22-68 (82)
227 1y7y_A C.AHDI; helix-turn-heli 51.2 25 0.00084 21.7 4.5 46 164-225 25-70 (74)
228 3kz3_A Repressor protein CI; f 51.2 18 0.00062 23.2 3.9 47 163-225 23-69 (80)
229 2ewt_A BLDD, putative DNA-bind 50.9 28 0.00097 21.3 4.7 46 164-225 20-67 (71)
230 3dwd_A ADP-ribosylation factor 50.7 4.7 0.00016 30.3 0.8 31 4-34 39-69 (147)
231 3bs3_A Putative DNA-binding pr 50.6 23 0.00077 22.1 4.2 46 164-225 22-67 (76)
232 3kcc_A Catabolite gene activat 50.2 32 0.0011 27.4 6.0 29 164-193 216-244 (260)
233 1vq8_1 50S ribosomal protein L 50.1 5 0.00017 25.0 0.8 22 5-31 19-40 (57)
234 2lr8_A CAsp8-associated protei 55.6 3.4 0.00012 26.7 0.0 41 154-195 24-65 (70)
235 2p5k_A Arginine repressor; DNA 49.9 32 0.0011 20.7 4.8 27 162-189 16-47 (64)
236 2z99_A Putative uncharacterize 49.8 34 0.0012 27.4 5.9 74 148-226 17-102 (219)
237 2olm_A Nucleoporin-like protei 49.5 5.1 0.00017 29.9 0.9 31 4-34 26-56 (140)
238 3j21_e 50S ribosomal protein L 49.5 6.2 0.00021 24.9 1.1 23 4-31 18-40 (62)
239 1jhg_A Trp operon repressor; c 49.2 22 0.00076 24.8 4.1 26 164-190 57-82 (101)
240 2owa_A Arfgap-like finger doma 49.0 4.7 0.00016 30.0 0.7 30 4-34 37-67 (138)
241 2iqj_A Stromal membrane-associ 48.9 4.8 0.00016 29.8 0.7 31 4-34 28-58 (134)
242 3lsg_A Two-component response 48.6 58 0.002 21.8 7.1 69 112-190 22-93 (103)
243 1tc3_C Protein (TC3 transposas 48.5 20 0.00068 20.0 3.4 23 166-189 22-44 (51)
244 3iwz_A CAP-like, catabolite ac 48.2 27 0.00091 26.9 5.1 28 164-192 186-213 (230)
245 3qq6_A HTH-type transcriptiona 48.1 36 0.0012 21.7 5.0 47 164-225 22-68 (78)
246 2xzm_9 RPS31E; ribosome, trans 47.8 12 0.00042 29.3 2.9 28 4-33 114-141 (189)
247 3g5g_A Regulatory protein; tra 47.8 39 0.0013 22.9 5.3 46 164-225 40-85 (99)
248 2p57_A GTPase-activating prote 47.7 4 0.00014 30.6 0.1 31 4-34 38-68 (144)
249 3d0s_A Transcriptional regulat 47.7 20 0.00068 27.7 4.3 29 164-193 176-204 (227)
250 3e0m_A Peptide methionine sulf 47.7 7.6 0.00026 32.9 1.8 31 19-49 205-237 (313)
251 3szt_A QCSR, quorum-sensing co 47.5 21 0.00073 28.4 4.5 33 164-197 189-221 (237)
252 2fu4_A Ferric uptake regulatio 47.5 36 0.0012 21.9 5.0 28 164-192 32-64 (83)
253 2qsb_A UPF0147 protein TA0600; 47.5 63 0.0022 21.9 6.9 52 102-157 9-60 (89)
254 2riq_A Poly [ADP-ribose] polym 47.4 11 0.00037 28.7 2.5 23 4-32 79-101 (160)
255 3c5k_A HD6, histone deacetylas 47.0 10 0.00036 26.8 2.2 24 4-35 25-48 (109)
256 2k1p_A Zinc finger RAN-binding 46.9 7.7 0.00026 21.2 1.2 13 20-32 3-15 (33)
257 1ft9_A Carbon monoxide oxidati 46.3 21 0.00071 27.6 4.2 29 164-193 162-190 (222)
258 1oyi_A Double-stranded RNA-bin 46.1 31 0.001 23.1 4.3 27 166-193 31-57 (82)
259 3bd1_A CRO protein; transcript 45.7 33 0.0011 21.8 4.5 42 167-225 13-56 (79)
260 2crr_A Stromal membrane-associ 45.7 5.4 0.00019 29.8 0.5 31 4-34 30-60 (141)
261 1l3l_A Transcriptional activat 45.6 31 0.0011 27.2 5.2 33 164-197 187-219 (234)
262 3fym_A Putative uncharacterize 45.5 51 0.0017 23.5 5.9 51 162-225 13-66 (130)
263 4ev0_A Transcription regulator 45.5 20 0.00067 27.4 3.9 29 164-193 162-190 (216)
264 1nha_A TFIIF-alpha, transcript 44.9 57 0.002 21.7 5.4 49 176-239 17-67 (82)
265 1kbe_A Kinase suppressor of RA 44.3 11 0.00037 22.6 1.6 24 4-34 15-38 (49)
266 2j6a_A Protein TRM112; transla 44.3 4.2 0.00014 30.4 -0.3 19 16-34 102-120 (141)
267 1ku9_A Hypothetical protein MJ 44.2 36 0.0012 24.1 5.0 29 163-192 39-67 (152)
268 2nnn_A Probable transcriptiona 43.9 78 0.0027 21.9 7.4 28 165-193 52-79 (140)
269 3eco_A MEPR; mutlidrug efflux 43.8 43 0.0015 23.5 5.3 29 163-192 45-73 (139)
270 2x4h_A Hypothetical protein SS 43.8 82 0.0028 22.1 7.1 31 162-193 28-58 (139)
271 2lkp_A Transcriptional regulat 43.7 55 0.0019 22.5 5.8 31 164-196 44-74 (119)
272 3i4p_A Transcriptional regulat 43.7 39 0.0013 25.1 5.2 32 161-193 13-44 (162)
273 2ofy_A Putative XRE-family tra 43.4 55 0.0019 20.9 5.4 44 167-225 29-72 (86)
274 3lcz_A YCZA, inhibitor of trap 43.4 9.9 0.00034 23.2 1.4 21 4-30 10-30 (53)
275 2crw_A ARF GAP 3, ADP-ribosyla 42.9 6.9 0.00024 29.5 0.7 30 4-34 30-60 (149)
276 3irb_A Uncharacterized protein 42.8 9.3 0.00032 28.5 1.5 23 4-32 48-70 (145)
277 2q0o_A Probable transcriptiona 42.8 29 0.00099 27.5 4.6 33 164-197 189-221 (236)
278 2dbb_A Putative HTH-type trans 42.7 39 0.0013 24.6 5.0 31 162-193 20-50 (151)
279 3trb_A Virulence-associated pr 42.6 53 0.0018 22.5 5.4 48 162-225 24-71 (104)
280 1wd2_A Ariadne-1 protein homol 42.6 11 0.00037 23.6 1.5 29 3-33 6-36 (60)
281 3mzy_A RNA polymerase sigma-H 42.4 29 0.00099 25.0 4.3 30 164-194 123-152 (164)
282 3tqn_A Transcriptional regulat 42.4 27 0.00091 24.4 3.8 29 163-192 30-59 (113)
283 2k02_A Ferrous iron transport 42.3 21 0.00073 24.1 3.1 30 163-193 14-43 (87)
284 2au3_A DNA primase; zinc ribbo 42.0 16 0.00053 32.1 3.0 27 5-31 36-63 (407)
285 3nrv_A Putative transcriptiona 42.0 89 0.003 22.0 7.0 31 161-193 51-81 (148)
286 2yw8_A RUN and FYVE domain-con 41.8 16 0.00055 24.2 2.4 29 4-36 20-48 (82)
287 2jox_A Churchill protein; zinc 41.7 19 0.00066 25.0 2.8 35 4-38 27-72 (106)
288 4ham_A LMO2241 protein; struct 41.4 26 0.00087 25.3 3.7 29 163-192 35-64 (134)
289 1d5y_A ROB transcription facto 41.3 51 0.0017 26.6 6.0 39 150-190 5-43 (292)
290 3cec_A Putative antidote prote 40.8 54 0.0018 22.0 5.2 46 164-225 30-75 (104)
291 2qzg_A Conserved uncharacteriz 40.5 86 0.0029 21.4 6.8 55 101-159 12-66 (94)
292 2cfx_A HTH-type transcriptiona 40.3 42 0.0014 24.2 4.8 30 162-192 16-45 (144)
293 3sub_A ADP-ribosylation factor 40.3 7.8 0.00027 29.6 0.7 31 4-34 23-53 (163)
294 3mn2_A Probable ARAC family tr 40.3 83 0.0028 21.2 9.8 80 112-215 21-105 (108)
295 3cuo_A Uncharacterized HTH-typ 40.3 44 0.0015 22.0 4.6 32 162-195 35-66 (99)
296 1lmb_3 Protein (lambda repress 40.2 37 0.0013 22.1 4.2 46 164-225 29-74 (92)
297 3r1f_A ESX-1 secretion-associa 40.2 62 0.0021 23.4 5.7 88 145-240 27-130 (135)
298 1xsv_A Hypothetical UPF0122 pr 40.1 37 0.0013 23.8 4.3 29 165-194 41-69 (113)
299 3jth_A Transcription activator 40.0 50 0.0017 21.9 4.9 28 164-192 35-62 (98)
300 2bgc_A PRFA; bacterial infecti 39.8 49 0.0017 25.7 5.5 27 165-192 169-196 (238)
301 1i1g_A Transcriptional regulat 39.7 47 0.0016 23.7 5.0 30 163-193 16-45 (141)
302 1b0n_A Protein (SINR protein); 39.5 52 0.0018 22.2 5.0 75 164-239 13-107 (111)
303 2cg4_A Regulatory protein ASNC 39.5 46 0.0016 24.2 5.0 30 162-192 19-48 (152)
304 3fm5_A Transcriptional regulat 39.4 41 0.0014 24.1 4.6 31 161-192 50-80 (150)
305 1on2_A Transcriptional regulat 39.4 52 0.0018 23.4 5.2 28 164-192 21-48 (142)
306 2pn6_A ST1022, 150AA long hypo 39.2 51 0.0017 23.8 5.2 31 162-193 14-44 (150)
307 2w0t_A Lethal(3)malignant brai 39.1 13 0.00044 21.7 1.3 17 18-34 1-17 (43)
308 2cyy_A Putative HTH-type trans 39.1 47 0.0016 24.2 5.0 30 163-193 19-48 (151)
309 3t76_A VANU, transcriptional r 39.1 37 0.0013 22.6 4.0 44 164-224 36-79 (88)
310 2eth_A Transcriptional regulat 38.9 50 0.0017 23.7 5.1 28 165-193 58-85 (154)
311 1sfx_A Conserved hypothetical 38.9 37 0.0013 22.5 4.1 28 164-192 33-60 (109)
312 2l8e_A Polyhomeotic-like prote 38.7 10 0.00034 22.8 0.9 21 14-34 9-29 (49)
313 2frh_A SARA, staphylococcal ac 38.7 38 0.0013 23.8 4.3 32 160-192 48-79 (127)
314 3v2d_Y 50S ribosomal protein L 38.6 20 0.00068 25.5 2.5 32 3-34 73-107 (110)
315 3qp6_A CVIR transcriptional re 38.6 35 0.0012 27.8 4.5 33 164-197 211-243 (265)
316 2eby_A Putative HTH-type trans 38.5 68 0.0023 21.8 5.5 48 162-225 21-68 (113)
317 2hku_A A putative transcriptio 38.5 55 0.0019 24.6 5.5 41 146-188 21-61 (215)
318 1bja_A Transcription regulator 38.5 48 0.0016 22.8 4.4 39 153-193 19-58 (95)
319 1y0u_A Arsenical resistance op 38.2 40 0.0014 22.4 4.1 29 164-193 42-70 (96)
320 3t72_q RNA polymerase sigma fa 38.1 94 0.0032 21.2 6.5 51 164-225 38-88 (99)
321 2b0l_A GTP-sensing transcripti 38.0 37 0.0013 23.4 3.9 30 163-193 40-70 (102)
322 1x57_A Endothelial differentia 38.0 81 0.0028 20.4 5.7 47 162-224 23-69 (91)
323 2f9y_B Acetyl-coenzyme A carbo 38.0 8.9 0.0003 32.4 0.7 42 4-49 25-75 (304)
324 1s7o_A Hypothetical UPF0122 pr 37.9 41 0.0014 23.6 4.3 29 165-194 38-66 (113)
325 2wiu_B HTH-type transcriptiona 37.6 47 0.0016 21.3 4.3 44 164-223 24-67 (88)
326 3neu_A LIN1836 protein; struct 37.5 40 0.0014 24.0 4.2 29 163-192 34-63 (125)
327 1ryq_A DNA-directed RNA polyme 37.4 7.9 0.00027 25.1 0.2 19 4-30 12-30 (69)
328 2jrr_A Uncharacterized protein 37.2 14 0.00048 23.8 1.4 16 19-34 36-51 (67)
329 3by6_A Predicted transcription 36.9 36 0.0012 24.3 3.9 29 163-192 32-61 (126)
330 3bj6_A Transcriptional regulat 36.8 53 0.0018 23.4 4.9 28 165-193 54-81 (152)
331 2p5v_A Transcriptional regulat 36.6 50 0.0017 24.3 4.8 29 163-192 22-50 (162)
332 1y07_A Desulfoferrodoxin (RBO) 36.6 12 0.00042 27.3 1.2 27 4-35 8-37 (128)
333 4cpa_I Metallocarboxypeptidase 36.4 8.6 0.00029 21.2 0.2 24 5-29 4-27 (38)
334 2kko_A Possible transcriptiona 35.9 69 0.0024 21.8 5.2 31 164-196 37-67 (108)
335 2ctt_A DNAJ homolog subfamily 35.9 17 0.00059 25.1 1.9 9 4-12 46-54 (104)
336 3kxa_A NGO0477 protein, putati 35.6 79 0.0027 22.9 5.7 47 163-225 79-125 (141)
337 3clo_A Transcriptional regulat 35.4 72 0.0024 25.5 5.9 33 164-197 211-243 (258)
338 2x48_A CAG38821; archeal virus 35.3 32 0.0011 20.1 2.9 22 166-188 32-53 (55)
339 2hr3_A Probable transcriptiona 35.3 79 0.0027 22.2 5.7 30 163-193 48-77 (147)
340 3gbg_A TCP pilus virulence reg 35.3 88 0.003 24.9 6.5 41 146-188 167-207 (276)
341 2qkd_A Zinc finger protein ZPR 34.8 23 0.00079 31.1 2.9 31 4-34 221-260 (404)
342 2fbh_A Transcriptional regulat 34.8 78 0.0027 22.1 5.5 31 162-193 49-79 (146)
343 2l0k_A Stage III sporulation p 34.7 29 0.00098 23.7 2.8 23 166-189 21-43 (93)
344 3mlf_A Transcriptional regulat 34.7 61 0.0021 22.3 4.7 44 164-223 35-78 (111)
345 2rdp_A Putative transcriptiona 34.6 64 0.0022 22.8 5.1 28 165-193 56-83 (150)
346 1z2q_A LM5-1; membrane protein 34.6 25 0.00086 23.4 2.5 29 4-36 22-50 (84)
347 4a18_A RPL37, ribosomal protei 34.5 13 0.00043 25.5 0.9 22 5-31 18-39 (94)
348 1lj9_A Transcriptional regulat 34.5 62 0.0021 22.7 4.9 29 164-193 42-70 (144)
349 1joc_A EEA1, early endosomal a 34.3 22 0.00075 25.7 2.3 30 4-37 70-99 (125)
350 3deu_A Transcriptional regulat 34.2 65 0.0022 23.7 5.1 30 162-192 65-94 (166)
351 1ub9_A Hypothetical protein PH 34.0 51 0.0018 21.6 4.1 29 164-193 29-57 (100)
352 2gnr_A Conserved hypothetical 33.9 16 0.00054 27.3 1.5 23 4-32 48-70 (145)
353 1vd4_A Transcription initiatio 33.9 17 0.00059 22.0 1.5 31 4-34 15-50 (62)
354 3f52_A CLP gene regulator (CLG 33.9 73 0.0025 21.8 5.1 44 165-224 41-84 (117)
355 1zs4_A Regulatory protein CII; 33.9 61 0.0021 21.7 4.2 21 165-186 24-44 (83)
356 3t7l_A Zinc finger FYVE domain 33.8 23 0.00079 23.9 2.2 30 4-37 21-50 (90)
357 1rqg_A Methionyl-tRNA syntheta 33.7 21 0.00072 33.8 2.6 23 5-34 142-164 (722)
358 2jvm_A Uncharacterized protein 33.6 19 0.00063 24.0 1.6 22 13-34 41-64 (80)
359 3bdd_A Regulatory protein MARR 33.5 70 0.0024 22.3 5.1 29 164-193 44-72 (142)
360 2w25_A Probable transcriptiona 33.5 62 0.0021 23.4 4.8 29 163-192 19-47 (150)
361 2ek5_A Predicted transcription 33.5 52 0.0018 23.6 4.3 29 163-192 25-54 (129)
362 1z91_A Organic hydroperoxide r 33.5 46 0.0016 23.6 4.1 28 165-193 54-81 (147)
363 3ivp_A Putative transposon-rel 33.2 66 0.0023 22.4 4.8 76 163-239 23-111 (126)
364 3ech_A MEXR, multidrug resista 33.2 52 0.0018 23.2 4.3 27 165-192 51-77 (142)
365 4ets_A Ferric uptake regulatio 33.1 13 0.00044 28.1 0.9 12 23-34 107-118 (162)
366 2e1c_A Putative HTH-type trans 33.1 61 0.0021 24.4 4.8 30 163-193 39-68 (171)
367 2bx9_A Anti-trap, AT, tryptoph 33.0 22 0.00077 21.6 1.8 21 4-30 10-30 (53)
368 1dvp_A HRS, hepatocyte growth 33.0 26 0.00088 27.8 2.7 31 3-37 161-191 (220)
369 2hzt_A Putative HTH-type trans 32.9 97 0.0033 21.0 5.5 29 163-192 25-54 (107)
370 3cjn_A Transcriptional regulat 32.9 67 0.0023 23.2 5.0 29 164-193 65-93 (162)
371 3jw4_A Transcriptional regulat 32.8 51 0.0017 23.5 4.2 37 155-192 47-83 (148)
372 1x4u_A Zinc finger, FYVE domai 32.8 35 0.0012 22.6 3.0 29 4-36 15-43 (84)
373 3iz5_l 60S ribosomal protein L 32.7 14 0.00048 25.3 0.9 22 5-31 18-39 (94)
374 2ia0_A Putative HTH-type trans 32.7 63 0.0022 24.2 4.9 29 163-192 29-57 (171)
375 2fjr_A Repressor protein CI; g 32.7 83 0.0028 23.5 5.6 43 167-226 22-64 (189)
376 2oqg_A Possible transcriptiona 32.6 54 0.0018 22.2 4.1 28 164-192 33-60 (114)
377 3lfp_A CSP231I C protein; tran 32.5 72 0.0025 21.1 4.7 22 164-186 13-38 (98)
378 1sfu_A 34L protein; protein/Z- 32.5 62 0.0021 21.2 4.0 31 164-195 28-58 (75)
379 3vk0_A NHTF, transcriptional r 32.5 63 0.0022 22.2 4.5 46 164-225 33-78 (114)
380 2a6c_A Helix-turn-helix motif; 32.4 97 0.0033 19.7 5.2 48 162-224 28-75 (83)
381 3nfi_A DNA-directed RNA polyme 32.2 54 0.0019 26.4 4.6 69 120-190 123-201 (237)
382 2yve_A Transcriptional regulat 32.1 64 0.0022 23.7 4.8 40 147-188 6-46 (185)
383 3oio_A Transcriptional regulat 31.9 1.2E+02 0.0041 20.5 7.8 72 112-196 26-100 (113)
384 2w48_A Sorbitol operon regulat 31.7 70 0.0024 26.6 5.4 30 162-192 18-47 (315)
385 3h5t_A Transcriptional regulat 31.6 30 0.001 28.9 3.1 25 163-188 7-31 (366)
386 3nqo_A MARR-family transcripti 31.6 69 0.0024 24.2 5.0 30 162-192 54-83 (189)
387 1xmk_A Double-stranded RNA-spe 31.4 66 0.0022 21.2 4.1 28 165-193 25-53 (79)
388 3o47_A ADP-ribosylation factor 31.3 11 0.00038 31.8 0.2 31 4-34 38-68 (329)
389 1twf_J DNA-directed RNA polyme 31.3 14 0.00047 24.0 0.6 12 24-35 5-16 (70)
390 2a61_A Transcriptional regulat 31.2 79 0.0027 22.1 5.0 29 164-193 46-74 (145)
391 4b8x_A SCO5413, possible MARR- 31.2 46 0.0016 24.0 3.7 31 161-192 47-77 (147)
392 2x5c_A Hypothetical protein OR 31.1 16 0.00056 25.0 1.0 9 4-12 53-61 (131)
393 1r1t_A Transcriptional repress 31.0 1.2E+02 0.0041 21.2 5.9 31 164-196 58-88 (122)
394 3pqk_A Biofilm growth-associat 31.0 59 0.002 21.7 4.1 28 164-192 35-62 (102)
395 2gxg_A 146AA long hypothetical 30.9 84 0.0029 22.0 5.1 30 163-193 48-77 (146)
396 1or7_A Sigma-24, RNA polymeras 30.8 56 0.0019 24.3 4.3 30 164-194 155-184 (194)
397 2fa5_A Transcriptional regulat 30.8 95 0.0032 22.3 5.5 30 163-193 61-90 (162)
398 2fbi_A Probable transcriptiona 30.7 67 0.0023 22.4 4.5 28 165-193 50-77 (142)
399 1y02_A CARP2, FYVE-ring finger 30.7 22 0.00075 25.6 1.7 30 4-37 20-49 (120)
400 3frw_A Putative Trp repressor 30.6 63 0.0022 22.7 4.1 32 160-192 53-84 (107)
401 3ppb_A Putative TETR family tr 30.5 71 0.0024 23.2 4.8 40 146-187 10-50 (195)
402 1r1u_A CZRA, repressor protein 30.5 62 0.0021 21.9 4.1 31 164-196 38-68 (106)
403 2qtq_A Transcriptional regulat 30.4 1E+02 0.0035 22.7 5.8 42 146-188 17-58 (213)
404 4glx_A DNA ligase; inhibitor, 30.1 28 0.00095 32.2 2.7 32 4-37 406-440 (586)
405 1yio_A Response regulatory pro 30.1 1.1E+02 0.0037 22.8 6.0 31 166-197 158-188 (208)
406 3cdh_A Transcriptional regulat 30.0 76 0.0026 22.7 4.8 30 163-193 55-84 (155)
407 1wfk_A Zinc finger, FYVE domai 29.9 33 0.0011 23.1 2.5 28 4-35 10-37 (88)
408 3tgn_A ADC operon repressor AD 29.9 84 0.0029 22.1 5.0 26 166-192 52-77 (146)
409 2k2d_A Ring finger and CHY zin 29.7 11 0.00038 25.0 -0.0 11 23-33 37-47 (79)
410 2qvo_A Uncharacterized protein 29.6 1.2E+02 0.0041 19.9 6.2 63 163-239 28-90 (95)
411 2lky_A Uncharacterized protein 29.5 1.5E+02 0.0051 20.9 6.0 51 177-235 40-90 (112)
412 2g45_A Ubiquitin carboxyl-term 29.5 30 0.001 25.2 2.3 21 5-33 36-56 (129)
413 2i5o_A DNA polymerase ETA; zin 29.4 10 0.00034 21.7 -0.2 15 21-35 7-21 (39)
414 2owo_A DNA ligase; protein-DNA 29.3 32 0.0011 32.3 3.0 33 4-38 406-441 (671)
415 2w7n_A TRFB transcriptional re 29.3 1.4E+02 0.0048 20.5 6.2 41 148-194 22-62 (101)
416 3bqz_B HTH-type transcriptiona 29.2 85 0.0029 22.8 5.1 36 150-187 7-43 (194)
417 2ppt_A Thioredoxin-2; thiredox 29.1 15 0.0005 27.1 0.5 29 4-33 15-44 (155)
418 3vp5_A Transcriptional regulat 29.0 85 0.0029 23.2 5.1 40 146-187 13-53 (189)
419 1mkm_A ICLR transcriptional re 29.0 1.2E+02 0.004 24.1 6.1 31 161-192 19-49 (249)
420 3ke2_A Uncharacterized protein 28.9 49 0.0017 23.6 3.2 65 163-230 32-112 (117)
421 3hrs_A Metalloregulator SCAR; 28.9 59 0.002 25.4 4.2 31 162-193 17-47 (214)
422 2nyx_A Probable transcriptiona 28.7 71 0.0024 23.4 4.5 28 165-193 59-86 (168)
423 1qpz_A PURA, protein (purine n 28.7 40 0.0014 27.8 3.4 22 166-188 1-22 (340)
424 1jko_C HIN recombinase, DNA-in 28.6 28 0.00097 19.6 1.8 22 166-188 22-43 (52)
425 2ftc_N Mitochondrial ribosomal 28.6 23 0.00079 24.4 1.5 30 4-33 64-96 (96)
426 2lfw_A PHYR sigma-like domain; 28.6 55 0.0019 23.9 3.8 30 164-194 108-137 (157)
427 1l8d_A DNA double-strand break 28.4 17 0.00059 25.4 0.8 8 4-11 48-55 (112)
428 3vpr_A Transcriptional regulat 28.3 1.1E+02 0.0037 22.3 5.6 27 161-188 18-45 (190)
429 2vn2_A DNAD, chromosome replic 28.3 1.6E+02 0.0054 20.8 9.0 62 166-236 52-113 (128)
430 2hu9_A MERP, mercuric transpor 27.9 22 0.00076 26.0 1.4 10 3-12 1-10 (130)
431 1ptq_A Protein kinase C delta 27.9 43 0.0015 19.4 2.5 30 3-35 11-40 (50)
432 2jvl_A TRMBF1; coactivator, he 27.7 1.3E+02 0.0045 20.3 5.5 46 163-224 47-92 (107)
433 3qkx_A Uncharacterized HTH-typ 27.6 97 0.0033 22.3 5.1 38 148-187 11-49 (188)
434 2enz_A NPKC-theta, protein kin 27.4 50 0.0017 20.5 2.9 31 4-37 24-54 (65)
435 1j9i_A GPNU1 DBD;, terminase s 27.3 37 0.0013 21.2 2.3 22 166-188 3-24 (68)
436 1s3j_A YUSO protein; structura 27.3 70 0.0024 22.8 4.1 29 164-193 50-78 (155)
437 2rae_A Transcriptional regulat 27.2 97 0.0033 22.8 5.2 40 146-187 18-58 (207)
438 1z4h_A TORI, TOR inhibition pr 27.2 62 0.0021 20.0 3.3 23 165-188 10-32 (66)
439 3k0l_A Repressor protein; heli 27.1 72 0.0025 23.1 4.3 27 165-192 60-86 (162)
440 3u2r_A Regulatory protein MARR 27.1 61 0.0021 23.7 3.9 37 155-192 52-88 (168)
441 2l02_A Uncharacterized protein 27.1 1.4E+02 0.0048 19.8 5.8 48 148-197 6-53 (82)
442 3op9_A PLI0006 protein; struct 27.0 1.5E+02 0.005 20.0 8.8 21 165-186 22-42 (114)
443 3dn7_A Cyclic nucleotide bindi 27.0 13 0.00045 27.9 0.0 29 162-191 165-193 (194)
444 1jgs_A Multiple antibiotic res 27.0 1E+02 0.0036 21.3 5.0 29 164-193 47-75 (138)
445 1i27_A Transcription factor II 27.0 89 0.003 20.3 3.9 49 176-239 8-58 (73)
446 3g3z_A NMB1585, transcriptiona 27.0 1.4E+02 0.005 20.8 5.9 27 165-192 45-71 (145)
447 2gen_A Probable transcriptiona 26.9 1.2E+02 0.0042 22.3 5.7 40 146-187 8-48 (197)
448 2zcm_A Biofilm operon icaabcd 26.9 1.3E+02 0.0044 21.9 5.8 39 147-187 9-48 (192)
449 4aik_A Transcriptional regulat 26.8 1.3E+02 0.0045 21.6 5.7 31 161-192 42-72 (151)
450 2pex_A Transcriptional regulat 26.7 1E+02 0.0035 21.9 5.0 30 163-193 59-88 (153)
451 3knw_A Putative transcriptiona 26.6 1.1E+02 0.0036 22.6 5.3 40 147-187 16-55 (212)
452 3e6m_A MARR family transcripti 26.6 73 0.0025 23.1 4.2 27 165-192 67-93 (161)
453 3zyq_A Hepatocyte growth facto 26.3 37 0.0013 27.0 2.6 30 4-37 165-194 (226)
454 2hsg_A Glucose-resistance amyl 26.3 40 0.0014 27.7 2.9 22 166-188 3-24 (332)
455 3lju_X ARF-GAP with dual PH do 26.3 19 0.00065 31.3 0.9 31 4-34 35-65 (386)
456 3mcz_A O-methyltransferase; ad 26.3 1.3E+02 0.0044 24.9 6.2 27 165-192 56-82 (352)
457 3f1b_A TETR-like transcription 26.3 1.1E+02 0.0039 22.2 5.4 38 148-187 17-55 (203)
458 3b73_A PHIH1 repressor-like pr 26.2 82 0.0028 22.1 4.1 31 160-192 23-55 (111)
459 1p91_A Ribosomal RNA large sub 26.2 26 0.00089 28.0 1.6 27 1-32 1-27 (269)
460 2o3f_A Putative HTH-type trans 26.2 54 0.0019 22.8 3.2 23 165-188 39-61 (111)
461 1rp3_A RNA polymerase sigma fa 26.1 76 0.0026 24.4 4.4 30 164-194 202-231 (239)
462 1o5l_A Transcriptional regulat 26.1 30 0.001 26.5 1.9 29 163-192 162-190 (213)
463 2w3l_A BCL2-XL, apoptosis regu 26.1 1.1E+02 0.0037 22.3 5.0 64 110-173 48-113 (144)
464 3mkl_A HTH-type transcriptiona 26.0 1.6E+02 0.0055 20.1 10.3 85 112-221 26-113 (120)
465 2dk5_A DNA-directed RNA polyme 25.9 1.5E+02 0.005 19.8 5.2 29 163-192 34-62 (91)
466 2a51_A Nucleocapsid protein; s 25.9 25 0.00085 19.5 1.1 27 5-31 2-29 (39)
467 2dg7_A Putative transcriptiona 25.8 77 0.0026 23.3 4.3 40 147-188 9-49 (195)
468 3dew_A Transcriptional regulat 25.6 79 0.0027 23.1 4.3 41 146-188 9-50 (206)
469 3he0_A Transcriptional regulat 25.6 88 0.003 22.8 4.6 41 145-186 11-51 (196)
470 1p2f_A Response regulator; DRR 25.6 1E+02 0.0035 23.3 5.0 43 154-197 153-198 (220)
471 2j9u_B VPS36, vacuolar protein 25.5 22 0.00075 23.4 0.8 31 4-34 18-51 (76)
472 2k5c_A Uncharacterized protein 25.5 18 0.00061 24.2 0.4 9 3-11 8-16 (95)
473 3kor_A Possible Trp repressor; 25.3 68 0.0023 23.0 3.5 33 158-191 68-100 (119)
474 3iwf_A Transcription regulator 25.3 72 0.0025 22.1 3.7 25 164-189 34-58 (107)
475 3oop_A LIN2960 protein; protei 25.2 1.1E+02 0.0039 21.3 5.0 28 164-192 50-77 (143)
476 2lo3_A SAGA-associated factor 25.2 29 0.00098 20.1 1.2 17 18-34 12-28 (44)
477 3f0c_A TETR-molecule A, transc 25.0 1E+02 0.0036 22.8 5.0 40 146-187 12-52 (216)
478 3jsj_A Putative TETR-family tr 25.0 1.1E+02 0.0037 22.2 5.0 40 146-187 10-49 (190)
479 3klo_A Transcriptional regulat 24.8 1.5E+02 0.0052 22.5 6.0 32 165-197 174-205 (225)
480 3bqy_A Putative TETR family tr 24.8 1E+02 0.0035 23.5 4.9 42 146-188 3-44 (209)
481 2gmg_A Hypothetical protein PF 24.7 73 0.0025 22.3 3.5 34 162-196 21-58 (105)
482 3kjx_A Transcriptional regulat 24.6 35 0.0012 28.3 2.2 23 164-187 9-31 (344)
483 3kz9_A SMCR; transcriptional r 24.6 1.2E+02 0.0041 22.1 5.2 38 148-187 20-58 (206)
484 3lwj_A Putative TETR-family tr 24.6 1.3E+02 0.0043 22.0 5.3 38 148-187 15-53 (202)
485 2g7g_A RHA04620, putative tran 24.6 88 0.003 23.9 4.5 41 145-188 11-51 (213)
486 2d6y_A Putative TETR family re 24.5 1.5E+02 0.005 22.0 5.8 40 147-188 10-50 (202)
487 2fq4_A Transcriptional regulat 24.5 1.3E+02 0.0043 22.1 5.3 39 148-188 15-54 (192)
488 2qww_A Transcriptional regulat 24.5 1.1E+02 0.0039 21.6 4.9 28 164-192 54-81 (154)
489 1pb6_A Hypothetical transcript 24.5 1.3E+02 0.0045 22.1 5.4 38 148-187 21-59 (212)
490 3on4_A Transcriptional regulat 24.4 93 0.0032 22.4 4.5 40 146-187 11-51 (191)
491 2gwr_A DNA-binding response re 24.3 1.3E+02 0.0044 23.2 5.5 43 154-197 161-208 (238)
492 1zfo_A LAsp-1; LIM domain, zin 24.3 31 0.0011 18.2 1.2 8 4-11 4-11 (31)
493 2g7s_A Transcriptional regulat 24.2 1E+02 0.0035 22.2 4.7 38 148-187 11-49 (194)
494 2v57_A TETR family transcripti 24.2 53 0.0018 24.0 3.0 37 148-187 17-53 (190)
495 3df8_A Possible HXLR family tr 24.2 1.6E+02 0.0054 20.1 5.4 29 163-192 38-69 (111)
496 2q24_A Putative TETR family tr 24.1 1.3E+02 0.0046 21.9 5.4 39 147-187 17-55 (194)
497 3lhq_A Acrab operon repressor 23.9 1.3E+02 0.0044 22.2 5.3 38 148-187 17-55 (220)
498 3col_A Putative transcription 23.8 59 0.002 23.7 3.2 41 146-187 11-51 (196)
499 3frq_A Repressor protein MPHR( 23.6 93 0.0032 22.8 4.4 41 146-188 9-50 (195)
500 3lst_A CALO1 methyltransferase 23.6 1.7E+02 0.0058 24.3 6.5 43 149-192 33-81 (348)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=8.6e-60 Score=415.27 Aligned_cols=241 Identities=33% Similarity=0.551 Sum_probs=173.7
Q ss_pred CCCCCCCCC-CCceeeeCCCCceEccCCcccccccccccCcccccccCCC-CCCCCCcccCCCCccccCCCceeEEecCC
Q 025983 3 DAFCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLADGGLSTVIAKPN 80 (245)
Q Consensus 3 ~~~Cp~Cg~-~~~iv~d~~~G~~vC~~CG~V~~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~~~~~l~t~i~~~~ 80 (245)
...||+||+ ++++++|+.+|++||.+||+||+|++||+|||||+|++++ ++.|++|+|+|.++++||+||+|.|+++.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~ 100 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCS
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCC
Confidence 457999996 4689999999999999999999999999999999999654 47899999999999999999999999765
Q ss_pred CCCccccchhhhhcccCC--CCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 025983 81 GASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIA 158 (245)
Q Consensus 81 ~~~~~~l~~~l~~~~~~~--~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~a 158 (245)
++.+ ...++|++||++. +++|++|.+|+..|.++|.+|+||+.+.++|..||+++++.++++||+.+.++|||||+|
T Consensus 101 ~~~~-~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiA 179 (345)
T 4bbr_M 101 TTDM-RFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp SCCH-HHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHH
T ss_pred Ccch-hhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 4331 1235688888764 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCcc------ccCCCCHHhHHHHHhhhcCCCHHHHHHHHH
Q 025983 159 CRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSV------EMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232 (245)
Q Consensus 159 cR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~------~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~ 232 (245)
||+++.|+||+||+++ +++++++|+++|+.|.+.|++...+++ .+|+++|++||+|||++|+|++++.+.|.+
T Consensus 180 CR~~~~prtl~eI~~~-~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~ 258 (345)
T 4bbr_M 180 CRRAEVARTFKEIQSL-IHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEY 258 (345)
T ss_dssp HHHTCCBCCHHHHHHH-HTCCTTHHHHHHHHHHHCC--------------------------------------------
T ss_pred HHhcCCCccHHHHHHH-hCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999999999999995 899999999999999999997532211 268889999999999999999999999999
Q ss_pred HHHHhhhccc--CCC
Q 025983 233 AVQKSEEFDI--RYS 245 (245)
Q Consensus 233 i~~~~~~~~~--~~~ 245 (245)
|++.+++.|+ ||+
T Consensus 259 i~~~~~~~~i~~GR~ 273 (345)
T 4bbr_M 259 TAKKCKEIKEIAGKS 273 (345)
T ss_dssp ---------------
T ss_pred HHHHHHhcccccCCC
Confidence 9999999987 553
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-55 Score=389.32 Aligned_cols=236 Identities=33% Similarity=0.552 Sum_probs=162.7
Q ss_pred CCCCCCCCCCC-ceeeeCCCCceEccCCcccccccccccCcccccccCCC-CCCCCCcccCCCCccccCCCceeEEecC-
Q 025983 3 DAFCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLADGGLSTVIAKP- 79 (245)
Q Consensus 3 ~~~Cp~Cg~~~-~iv~d~~~G~~vC~~CG~V~~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~~~~~l~t~i~~~- 79 (245)
.+.||+||+.+ ++++|+.+|++||++||+|++|++||++||||+|++++ ++.+++|+|+|.++++|+++++|.|+++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~ 100 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTT
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCC
Confidence 46899999832 79999999999999999999999999999999999743 4678999999999999999999999875
Q ss_pred -CCCCccccchhhhhcccC--CCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 025983 80 -NGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLY 156 (245)
Q Consensus 80 -~~~~~~~l~~~l~~~~~~--~~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY 156 (245)
.++++ .+.|++||++ .+++|+++.+++.+|+++|..|+||+.++++|..||+++++.++++|++.+.++|||||
T Consensus 101 ~~~~~~---~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAcly 177 (345)
T 3k7a_M 101 TTDMRF---TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177 (345)
T ss_dssp SCCHHH---HHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTT
T ss_pred CCCchh---hhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 23322 2358888865 37899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccC------CccccCCCCHHhHHHHHhhhcCCCHHHHHHH
Q 025983 157 IACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG------QSVEMGTIHAGDFMRRFCSNLGMNNQAVKAA 230 (245)
Q Consensus 157 ~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~------~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A 230 (245)
+|||+++.|++++||+.+ +++++++|+++|+.|.+.|+.... ..+.+++.+|.+||+|||+.|+|++++.+.|
T Consensus 178 iAcR~e~~prtl~ei~~~-~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A 256 (345)
T 3k7a_M 178 IGCRRAEVARTFKEIQSL-IHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSA 256 (345)
T ss_dssp TTSBTTBSSCCHHHHHHS-SSCCSHHHHHHHHHHHHHHTCC---------------------------------------
T ss_pred HHHHHcCCCccHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999995 899999999999999999982100 0123788999999999999999999999999
Q ss_pred HHHHHHhhhccc
Q 025983 231 QEAVQKSEEFDI 242 (245)
Q Consensus 231 ~~i~~~~~~~~~ 242 (245)
.+|++.+++.++
T Consensus 257 ~~i~~~~~~~~l 268 (345)
T 3k7a_M 257 EYTAKKCKEIKE 268 (345)
T ss_dssp ------------
T ss_pred HHHHHHHHHhch
Confidence 999999999886
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.97 E-value=3.2e-29 Score=205.14 Aligned_cols=137 Identities=27% Similarity=0.559 Sum_probs=128.8
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCC
Q 025983 99 SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178 (245)
Q Consensus 99 ~~~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v 178 (245)
+++||++.+++++|.++|.+|+||+.+.++|..+|+++.+.++++|+++..++|||||+|||+++.|++++||+++ +++
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~-~~v 81 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI-ARV 81 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHH-TTS
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHH-HCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999995 899
Q ss_pred CHHHHHHHHHHHHHHhCCccCCccccCC--CCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhhhccc
Q 025983 179 TKKEIGRAKEYIVKQLGLETGQSVEMGT--IHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242 (245)
Q Consensus 179 ~~~~i~~~~~~l~~~l~~~~~~~~~~~~--~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~ 242 (245)
++++|+++|+.|.+.|++. +++ .+|..||+|||+.|++++++.+.|.+|++.+.+.++
T Consensus 82 ~~~~i~~~~~~l~~~L~~~------~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~ 141 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLNLT------PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGL 141 (200)
T ss_dssp CHHHHHHHHHHHHHHTTCC------TTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccc------CCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999987 788 899999999999999999999999999999999886
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=4.2e-26 Score=187.55 Aligned_cols=135 Identities=50% Similarity=0.809 Sum_probs=130.4
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCH
Q 025983 101 PDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180 (245)
Q Consensus 101 ~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~ 180 (245)
+||++.+++++|+++|.+|+||+.++++|..+|+++++.+.++|+++..++|||+|+|||.++.|++++||+.+ ++++.
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~-~~~~~ 79 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAV-SRISK 79 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHT-SSSCH
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HCCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred HHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhhhccc
Q 025983 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242 (245)
Q Consensus 181 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~ 242 (245)
++|+++|+.|.+.|++. ++..+|..||.||++.|++++++.+.|..+++.+.+.++
T Consensus 80 ~~i~~~~~~ll~~L~~~------l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l 135 (207)
T 1c9b_A 80 KEIGRCFKLILKALETS------VDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDL 135 (207)
T ss_dssp HHHHHHHHHHHHHTTCC------CCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCC------cCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999987 788999999999999999999999999999999998775
No 5
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.7e-20 Score=145.10 Aligned_cols=66 Identities=33% Similarity=0.617 Sum_probs=57.8
Q ss_pred CCCCCCCCCCC-CceeeeCCCCceEccCCcccccccccccCcccccccCCC-CCCCCCcccCCCCccc
Q 025983 2 TDAFCSDCKKH-TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLL 67 (245)
Q Consensus 2 ~~~~Cp~Cg~~-~~iv~d~~~G~~vC~~CG~V~~e~~id~~~ewr~f~~~~-~~~~~~r~G~~~~~~~ 67 (245)
....||+||+. +++++|+++|++||.+||+|++|++||.|||||+|++++ ++.+++|+|+|.+++.
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs~~~~ 87 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXXXXXX 87 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCBCCHH
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCccccccccccccccccccc
Confidence 34589999982 579999999999999999999999999999999999654 4678999999987654
No 6
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.75 E-value=6.6e-17 Score=135.07 Aligned_cols=131 Identities=22% Similarity=0.321 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCC-CCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHh-------
Q 025983 105 LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRG-RNQDALLAACLYIACRQEDKPRTVKEICSVAN------- 176 (245)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~g-r~~~~iaAA~lY~acR~~~~~~tl~dia~~~~------- 176 (245)
...+.++|.+++..|+||+.+..+|..+|++++..+.+++ +++..+++||+|+|||.++.|++++||+.++.
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 5568899999999999999999999999999999888888 99999999999999999999999999998632
Q ss_pred CCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhhhcc
Q 025983 177 GATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFD 241 (245)
Q Consensus 177 ~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~ 241 (245)
..+.++|.+..+.|.+.|+.+ +...+|..||.+|++.+++++++.+.|..+++.+...+
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~------l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~ 166 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAF------LIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASS 166 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTC------CCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTT
T ss_pred hccHHHHHHHHHHHHHHCCCc------EEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 478999999999999999987 77889999999999999999999999999999987654
No 7
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.75 E-value=8.1e-19 Score=114.14 Aligned_cols=47 Identities=45% Similarity=0.834 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccccccccccCcccccccCC
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE 50 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~id~~~ewr~f~~~ 50 (245)
.+.||+||+ ..+++|+.+|++||.+||+|++|++||.|||||+|+++
T Consensus 11 ~~~Cp~C~~-~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 11 RVTCPNHPD-AILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp CCSBTTBSS-SCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred cccCcCCCC-CceeEeCCCCeEEeCCCCCEEeccccccCCcccccCCC
Confidence 358999998 57999999999999999999999999999999999853
No 8
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.66 E-value=7.3e-16 Score=125.55 Aligned_cols=90 Identities=27% Similarity=0.407 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHH
Q 025983 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~ 186 (245)
++..+|.++|+.|+||+.+.+.|..|++.+.+.++..|++|..+||||||+||+..|.|++++||+.+ +++++.+|+++
T Consensus 107 ~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~-~~vs~~ti~~~ 185 (200)
T 1ais_B 107 KPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEV-ARVTEVTVRNR 185 (200)
T ss_dssp CGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH-HTCCHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHH-hCCCHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred HHHHHHHhCCc
Q 025983 187 KEYIVKQLGLE 197 (245)
Q Consensus 187 ~~~l~~~l~~~ 197 (245)
|++|.+.|+++
T Consensus 186 ~~~l~~~l~~~ 196 (200)
T 1ais_B 186 YKELVEKLKIK 196 (200)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999986
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.62 E-value=3.1e-16 Score=99.30 Aligned_cols=44 Identities=39% Similarity=0.989 Sum_probs=41.9
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccccccccCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA 48 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~id~~~ewr~f~ 48 (245)
..||.||+ +.+++|+.+|++||..||+|++++.||.++|||+|+
T Consensus 6 ~~CP~C~~-~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSC-CCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCC-cceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 57999998 589999999999999999999999999999999997
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.60 E-value=6e-14 Score=118.51 Aligned_cols=127 Identities=16% Similarity=0.202 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHh---------
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN--------- 176 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~--------- 176 (245)
..+.++|.+++..|+||+.+..+|..||++++....++++++..+++||+|+||+.++.|++++||+.++.
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence 45789999999999999999999999999999999899999999999999999999999999999987521
Q ss_pred -CCC-------HHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 025983 177 -GAT-------KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238 (245)
Q Consensus 177 -~v~-------~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~ 238 (245)
.++ .++|.+..+.|.+.|+.+ +...+|..|+.+|+..++.++++.+.|..+++.+-
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f~------l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl 175 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGFE------ITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSL 175 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcccc------eEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 122 678999999999999987 77889999999999999999999999999987765
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.59 E-value=5.9e-14 Score=118.58 Aligned_cols=129 Identities=18% Similarity=0.222 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhC--C-----
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG--A----- 178 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~--v----- 178 (245)
..+.++|.+++..|+||+.+...|..||++++....++++++..+++||+|+|||.++.|++++||..+ +. +
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~-~~~~~~~~~~ 120 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKT-ARSLLNDVQF 120 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH-HHHHSCHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHH-HHHHhchhhh
Confidence 457899999999999999999999999999999988999999999999999999999999999999874 22 1
Q ss_pred ------CHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH----HHHHHHHHHHHHhhhcc
Q 025983 179 ------TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN----QAVKAAQEAVQKSEEFD 241 (245)
Q Consensus 179 ------~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~ 241 (245)
+.++|.+..+.|.+.|+.. +...+|..|+.+|+..|+.+. ++.+.|..+++.+....
T Consensus 121 ~~~~~~~~~~i~~~E~~iL~~L~f~------l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~ 187 (258)
T 2i53_A 121 GQFGDDPKEEVMVLERILLQTIKFD------LQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTT 187 (258)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHCCCc------eeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCC
Confidence 3678999999999999987 778899999999999999987 68889999998876543
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.57 E-value=5.8e-14 Score=120.43 Aligned_cols=129 Identities=13% Similarity=0.201 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCc-CHHHHHHHHh--------
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPR-TVKEICSVAN-------- 176 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~-tl~dia~~~~-------- 176 (245)
..+.++|.+++..|+||+.+..+|..||++++....+++.++..+++||+|+||+.++.|+ ++.||..++.
T Consensus 44 ~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~ 123 (285)
T 3rgf_B 44 IFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 123 (285)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence 4578999999999999999999999999999999999999999999999999999999998 6889876421
Q ss_pred -------CCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhhhc
Q 025983 177 -------GATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240 (245)
Q Consensus 177 -------~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~ 240 (245)
.....+|.+..+.|.+.|+++ +...+|..|+.+|+..|++++++.+.|..+++.+...
T Consensus 124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~------l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t 188 (285)
T 3rgf_B 124 YAFPKEFPYRMNHILECEFYLLELMDCC------LIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRT 188 (285)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHHHHTTTC------CCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHcCCC------eEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Confidence 136789999999999999987 7778999999999999999999999999999887653
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.51 E-value=1e-13 Score=122.46 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhC--------
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANG-------- 177 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~-------- 177 (245)
..+.++|.+++..|+||+.+..+|..||++++....++++++..+++||||+||+.+..|++++||..+ +.
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v-~~~~~~~~~~ 117 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKV-AHTCLHPQES 117 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTT-HHHHHCSSSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHH-HHHHhccccc
Confidence 457899999999999999999999999999999988999999999999999999999999999999763 21
Q ss_pred ---C-------CHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 025983 178 ---A-------TKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238 (245)
Q Consensus 178 ---v-------~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~ 238 (245)
+ ..++|.+..+.|.+.|+++ +...+|..||.+|+..|++++++.+.|..+++.+.
T Consensus 118 ~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~------L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl 182 (358)
T 2pk2_A 118 LPDTRSEAYLQQVQDLVILESIILQTLGFE------LTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSL 182 (358)
T ss_dssp CCCTTSHHHHGGGTGGGTHHHHHHHHTTTC------CCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHcCCc------eeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 1567888999999999987 77889999999999999999999999999997765
No 14
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.50 E-value=1.1e-13 Score=113.31 Aligned_cols=91 Identities=22% Similarity=0.252 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~ 185 (245)
.++..+|.++++.|++|+.+.+.|..+++.+.+.++..|++|..+||||||+||+..|.+++++||+++ +++++.+|++
T Consensus 100 ~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~-~~v~~~tI~~ 178 (207)
T 1c9b_A 100 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI-AGVADVTIRQ 178 (207)
T ss_dssp CCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHH-HTCCHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHH-hCCCHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHHHhCCc
Q 025983 186 AKEYIVKQLGLE 197 (245)
Q Consensus 186 ~~~~l~~~l~~~ 197 (245)
+|+.|.+.++..
T Consensus 179 ~~~~l~~~l~~~ 190 (207)
T 1c9b_A 179 SYRLIYPRAPDL 190 (207)
T ss_dssp HHHHHGGGHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.49 E-value=7.9e-13 Score=115.23 Aligned_cols=127 Identities=11% Similarity=0.137 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCC----
Q 025983 106 ILAFKTIATMSDRLG--LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT---- 179 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~--Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~---- 179 (245)
..+..+|.++|..|+ ||+.+..+|..||++++....+.+.++..+++||+|+||+.++.|++++||+.+ ...+
T Consensus 58 ~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~-~~~~p~~~ 136 (323)
T 1jkw_A 58 KYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGN-LRESPLGQ 136 (323)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGG-SSSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHH-hccChhhh
Confidence 446789999999999 999999999999999999999999999999999999999999999999999774 5445
Q ss_pred ---HHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhc-------CCCHHHHHHHHHHHHHhhh
Q 025983 180 ---KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL-------GMNNQAVKAAQEAVQKSEE 239 (245)
Q Consensus 180 ---~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L-------~l~~~v~~~A~~i~~~~~~ 239 (245)
..+|.+..+.|.+.|++. +.+.+|..||.+|+..| +.++++.+.|..+++.+..
T Consensus 137 ~~~~~~Il~~E~~iL~~L~f~------l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~ 200 (323)
T 1jkw_A 137 EKALEQILEYELLLIQQLNFH------LIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIAL 200 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC------CCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCc------EEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 578999999999999987 77889999999999776 3346688889888887654
No 16
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.49 E-value=1.6e-12 Score=110.61 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhC--CCHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKEICSVANG--ATKKE 182 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~--v~~~~ 182 (245)
....++|.+++..++|++.+...|..++.++.....+.+++...+++||+|+|||.++. |.+++|+..+ .+ .+.++
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~-~~~~~~~~e 117 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFV-TDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TCSSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHH-hcCCCCHHH
Confidence 44678999999999999999999999999999988888899999999999999999887 8999999985 53 78999
Q ss_pred HHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhhhc
Q 025983 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240 (245)
Q Consensus 183 i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~ 240 (245)
|.+..+.|.+.|+.+ +...+|..|+.+|+..++++.++...|..+++.+...
T Consensus 118 I~~mE~~IL~~L~f~------l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~ 169 (269)
T 2b9r_A 118 IRQMEMKILRALNFG------LGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLD 169 (269)
T ss_dssp HHHHHHHHHHHTTSC------CCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcCCc------cCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999987 7778999999999999999999999999999987643
No 17
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.42 E-value=4e-12 Score=107.55 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHh--CCCHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKEICSVAN--GATKKE 182 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~--~v~~~~ 182 (245)
....++|.+++..++|+..+.-.|..++.++.....+..++...+++||+|+|||.++. |.+++|+..+ . ..+.++
T Consensus 40 ~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i-~~~~~~~~~ 118 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYI-TDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTSSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHH-HcCCcCHHH
Confidence 45788999999999999999999999999998877777778999999999999999998 9999999885 5 378999
Q ss_pred HHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH-HHHHHHHHHHHHhh
Q 025983 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN-QAVKAAQEAVQKSE 238 (245)
Q Consensus 183 i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~ 238 (245)
|.+..+.|.+.|+.. +...+|..|+.+|+..+++++ ++...|..+++.+-
T Consensus 119 i~~mE~~iL~~L~~~------l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl 169 (260)
T 2cch_B 119 VLRMEHLVLKVLTFD------LAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSL 169 (260)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc------cCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 999999999999987 777899999999999999886 89999999988753
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.38 E-value=3.4e-14 Score=124.77 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~ 185 (245)
.++..+|.++|+.|+|+..+...|.+|.+.+.+.++..||+|.++||||||+||++++.++|++||+++ ++|++.+|++
T Consensus 233 ~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v-~~Vse~TIr~ 311 (345)
T 4bbr_M 233 AQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQT-LQVTEGTIKS 311 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHH-HCCCHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHHHhCC
Q 025983 186 AKEYIVKQLGL 196 (245)
Q Consensus 186 ~~~~l~~~l~~ 196 (245)
.|++|.+.++.
T Consensus 312 rykel~~~~~~ 322 (345)
T 4bbr_M 312 GYKILYEHRDK 322 (345)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 19
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.37 E-value=2.6e-11 Score=103.10 Aligned_cols=125 Identities=15% Similarity=0.255 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHh--CCCHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKEICSVAN--GATKKE 182 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~--~v~~~~ 182 (245)
....++|.+++..+++++.+.-.|..++.++.....+..++...+++||+|+|||.++. |+++.|++.+ . ..+.++
T Consensus 58 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~-~~~~~~~~e 136 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIY-TDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTSSCHHH
T ss_pred HHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-hcCCCCHHH
Confidence 45678999999999999999999999999999888788889999999999999999998 9999999885 4 378999
Q ss_pred HHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHH----HHHHHHHHHh
Q 025983 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAV----KAAQEAVQKS 237 (245)
Q Consensus 183 i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~----~~A~~i~~~~ 237 (245)
|.+..+.|.+.|+.. +...+|..|+.+|+..|+++++.. +.|..+++.+
T Consensus 137 I~~mE~~IL~~L~~~------l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~ 189 (271)
T 2w96_A 137 LLQMELLLVNKLKWN------LAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALC 189 (271)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc------cCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999987 778899999999999999997753 4566666654
No 20
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.28 E-value=6.1e-11 Score=100.05 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhC--CCHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK-PRTVKEICSVANG--ATKKE 182 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~--v~~~~ 182 (245)
....++|-+++..+++++.+.-.|..|+.++.....+++++...++++|+|+||+.+.. |.++.|++.+ .+ .+.++
T Consensus 52 ~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~-~~~~~~~~~ 130 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA-AADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTCSCHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHH-HCCCCCHHH
Confidence 45688999999999999999999999999999988888888999999999999998775 9999999885 43 78999
Q ss_pred HHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHH----HHHHHHHHHHhh
Q 025983 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQA----VKAAQEAVQKSE 238 (245)
Q Consensus 183 i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v----~~~A~~i~~~~~ 238 (245)
|.+..+.|.+.|+.+ +...+|..|+.+|+..++++.+. .+.|..+++.+-
T Consensus 131 i~~mE~~iL~~L~~~------l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l 184 (257)
T 1g3n_C 131 LIDQEKELLEKLAWR------TEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKAL 184 (257)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc------CCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999987 77789999999999999997653 456777766543
No 21
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.21 E-value=1.7e-10 Score=97.10 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCC-CCcCHHHHHHHHh--CCCHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED-KPRTVKEICSVAN--GATKKE 182 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~-~~~tl~dia~~~~--~v~~~~ 182 (245)
....++|-+++..+++++.+.-.|..|+.++.....+++++...++++|+|+||+.+. .|.+++|++.+ . ..+.++
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~-~~~~~~~~~ 131 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL-SCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTT-C---CCHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHH-hCCCCCHHH
Confidence 4467899999999999999999999999999998888899999999999999999976 69999999763 3 368999
Q ss_pred HHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHH----HHHHHHHHHHh
Q 025983 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQA----VKAAQEAVQKS 237 (245)
Q Consensus 183 i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v----~~~A~~i~~~~ 237 (245)
|.+..+.|.+.|+.+ +...+|..|+.+|+..++++.+. .+.|..+++.+
T Consensus 132 i~~mE~~IL~~L~~~------l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~ 184 (254)
T 2f2c_A 132 LINQEKDILEALKWD------TEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKA 184 (254)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc------CCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHH
Confidence 999999999999987 77789999999999999998764 45566666654
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.5e-12 Score=114.45 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHH
Q 025983 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~ 186 (245)
++..+|.++|+.|+|+..+...|..|.+.+.+.++..||+|..+||||||+|++..+.++++++|+.+ ++|++.+|++.
T Consensus 234 ~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~-~~Vse~TIr~~ 312 (345)
T 3k7a_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQT-LQVTEGTIKSG 312 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HCCCHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred HHHHHHHhC
Q 025983 187 KEYIVKQLG 195 (245)
Q Consensus 187 ~~~l~~~l~ 195 (245)
|++|.+.+.
T Consensus 313 ykel~~~~~ 321 (345)
T 3k7a_M 313 YKILYEHRD 321 (345)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998775
No 23
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.13 E-value=7.1e-10 Score=94.82 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhC-CCCCCCCHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHh--CCCHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQ-KSSRGRNQDALLAACLYIACRQEDK-PRTVKEICSVAN--GATKK 181 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~-~~~~gr~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~--~v~~~ 181 (245)
....++|.+++..+++++.+.-.|..++.++... ..+++++...+++||+|+||+.++. |.+++|++.+ . ..+.+
T Consensus 51 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i-~~~~~~~~ 129 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV-TDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT-TTTSSCHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH-HcCCCCHH
Confidence 4567899999999999999999999999999886 5678889999999999999999986 8999999874 5 37899
Q ss_pred HHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH
Q 025983 182 EIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224 (245)
Q Consensus 182 ~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 224 (245)
+|.+..+.|.+.|+.. +...+|..|+.+|+..+++++
T Consensus 130 ei~~mE~~IL~~L~~~------l~~~tp~~fL~~f~~~~~~~~ 166 (283)
T 1w98_B 130 EILTMELMIMKALKWR------LSPLTIVSWLNVYMQVAYLND 166 (283)
T ss_dssp HHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHcCCc------CCCCCHHHHHHHHHHHhccCc
Confidence 9999999999999987 778899999999999888754
No 24
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.07 E-value=2.2e-09 Score=92.77 Aligned_cols=125 Identities=14% Similarity=0.213 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCC-CCcCHHHHHHHHhC--CCHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED-KPRTVKEICSVANG--ATKKE 182 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~-~~~tl~dia~~~~~--v~~~~ 182 (245)
....++|.+++..++|++.+.-.|..|+.++.....+.......++++|+|+||+.+. .|.++.++..+ .+ .+..+
T Consensus 72 ~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~-~~~~~~~~~ 150 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIY-TDHAVSPRQ 150 (306)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHH-TTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH-hccCccHHH
Confidence 4578999999999999999999999999999988888888999999999999999855 68899999875 44 67899
Q ss_pred HHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH----HHHHHHHHHHHh
Q 025983 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ----AVKAAQEAVQKS 237 (245)
Q Consensus 183 i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~----v~~~A~~i~~~~ 237 (245)
|.+..+.|.+.|+.. +....|..|+.+|+..|+++.+ +.+.|..+++.+
T Consensus 151 i~~mE~~IL~~L~f~------l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~ls 203 (306)
T 3g33_B 151 LRDWEVLVLGKLKWD------LAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALC 203 (306)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc------cCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence 999999999999987 7778999999999999998754 445666666644
No 25
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.73 E-value=4.8e-07 Score=75.90 Aligned_cols=124 Identities=9% Similarity=0.011 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCC-CCcCHHHHHHHHh--CCCHHH
Q 025983 106 ILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQED-KPRTVKEICSVAN--GATKKE 182 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~-~~~tl~dia~~~~--~v~~~~ 182 (245)
....++|-+++..++|++++.-.|..++.+..............++++|+|+|++.+. .|.++.+++.+ . ..+..+
T Consensus 50 ~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~-~~~~yt~~~ 128 (252)
T 1f5q_B 50 KVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYL-CGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HCTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH-hCCCCCHHH
Confidence 3467899999999999999999999999999887767777889999999999999776 48899998774 3 367899
Q ss_pred HHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH----HHHHHHHHHHH
Q 025983 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ----AVKAAQEAVQK 236 (245)
Q Consensus 183 i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~----v~~~A~~i~~~ 236 (245)
|.+.-+.|.+.|+.+ +....|..|+.+|...++.+.+ +...|..+++.
T Consensus 129 i~~mE~~IL~~L~w~------l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~ 180 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWV------ADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFC 180 (252)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc------cCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH
Confidence 999999999999987 7778999999999999999865 33455555544
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=98.15 E-value=3.6e-06 Score=66.86 Aligned_cols=113 Identities=20% Similarity=0.380 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHH
Q 025983 109 FKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRG---RNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185 (245)
Q Consensus 109 ~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~g---r~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~ 185 (245)
...|.++..+-.+|+.+.+.|.++.+.++...--+| .++..+||||+.+|..+.+.|+++.|+-. ++-+..+|.-
T Consensus 16 ~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~--lD~sL~Dvel 93 (260)
T 3h4c_A 16 LNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC--LDSSLGDVEL 93 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH--HCTTCCCHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH--HhhhhhHHHH
Confidence 456788888899999999999999999876544444 47889999999999999999999999954 5666666666
Q ss_pred HHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH
Q 025983 186 AKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224 (245)
Q Consensus 186 ~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 224 (245)
..-+|.+.+++...-. .+...-...+|..|+.+|+|+-
T Consensus 94 rr~Eiv~~l~l~e~e~-rl~~~~~~NLl~~Yv~kL~Lq~ 131 (260)
T 3h4c_A 94 RRADIVRELHLEDSER-RLRDTFADNLLVKYILKLGLQV 131 (260)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHccCCHHHH-HHHHHhhhhHHHHHHHHhccch
Confidence 6668888888752100 0111224468888999999974
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.04 E-value=1e-05 Score=66.92 Aligned_cols=88 Identities=10% Similarity=0.038 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHH
Q 025983 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~ 186 (245)
.+..+|.+++..++++..+...|..+...+......-+++|..+||||||+|++..+.+.+ .+.... .++++.+|..+
T Consensus 133 ~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~-~~~~~~-~~~~~~~i~~~ 210 (235)
T 1zp2_A 133 HPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP-KLLDLI-KSTDAFKVILC 210 (235)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH-HHHHHC-CHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC-CCcchh-hcCCHHHHHHH
Confidence 4678899999999999999999999999988777778999999999999999999887543 344453 47899999999
Q ss_pred HHHHHHHhCC
Q 025983 187 KEYIVKQLGL 196 (245)
Q Consensus 187 ~~~l~~~l~~ 196 (245)
++.|.+....
T Consensus 211 ~~~i~~ly~~ 220 (235)
T 1zp2_A 211 VQRIISIYYF 220 (235)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.00 E-value=2e-05 Score=66.21 Aligned_cols=88 Identities=7% Similarity=-0.096 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHH
Q 025983 107 LAFKTIATMSDRLGLVA-TIKDRANEIYKKVE-DQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIG 184 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~~~-~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~ 184 (245)
.+..+|.+++..++++. .+...|..+...+. +...+-+.+|..+||||||+|++..+.+....+++.+ +|++..+|.
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~-~g~~~~~i~ 216 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRK-TGYTLESLK 216 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHH-HCCCHHHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHH-hCcCHHHHH
Confidence 47889999999999986 78888888887754 4332568999999999999999988888888889885 899999999
Q ss_pred HHHHHHHHHhC
Q 025983 185 RAKEYIVKQLG 195 (245)
Q Consensus 185 ~~~~~l~~~l~ 195 (245)
.+++.|.+.+.
T Consensus 217 ~~~~~l~~~~~ 227 (260)
T 2cch_B 217 PCLMDLHQTYL 227 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988664
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.96 E-value=1e-05 Score=68.31 Aligned_cols=87 Identities=9% Similarity=-0.021 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHH
Q 025983 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~ 186 (245)
.+..+|.+++..++++..+...|..+...+.....+-+.+|..+||||||+|++..+.+....++..+ +|+++.+|..+
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~-tg~~~~~l~~~ 215 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHY-LSYTEESLLPV 215 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHH-SCCCSSTTTTH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HCCCHHHHHHH
Confidence 46789999999999999999999999988876666778999999999999999999887777788885 89999999999
Q ss_pred HHHHHHHh
Q 025983 187 KEYIVKQL 194 (245)
Q Consensus 187 ~~~l~~~l 194 (245)
++.|.+.+
T Consensus 216 ~~~l~~~~ 223 (269)
T 2b9r_A 216 MQHLAKNV 223 (269)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 30
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=97.79 E-value=7.6e-05 Score=62.95 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCCHHHH----HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCC---------CcCHHHHHH
Q 025983 107 LAFKTIATMSDRLGLVATIK----DRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK---------PRTVKEICS 173 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~----~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~---------~~tl~dia~ 173 (245)
.+.++|..++..++++.... ..|..+...+.....+-+.+|..+||||||+|++..+. +.+..+++.
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~ 235 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSR 235 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHH
Confidence 46789999999999997653 45666666554333345789999999999999986642 124678888
Q ss_pred HHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 174 VANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 174 ~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
+ +|+++.+|..+++.|.+.++..
T Consensus 236 ~-~~v~~~~l~~c~~~i~~l~~~~ 258 (271)
T 2w96_A 236 V-IKCDPDCLRACQEQIEALLESS 258 (271)
T ss_dssp H-HTSCHHHHHHHHHHHHHHHTTT
T ss_pred H-HCcCHHHHHHHHHHHHHHHHHH
Confidence 5 8999999999999999988754
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.76 E-value=6.6e-05 Score=63.89 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHH
Q 025983 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~ 186 (245)
.+.++|.+++..|+++..+...|..+..........-+..|..+||||||+|++..+.+. ..... .++++..+|..+
T Consensus 156 ~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~-~~~~~~~~l~~~ 232 (285)
T 3rgf_B 156 HPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFA-ELSVDMEKILEI 232 (285)
T ss_dssp CSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHH-TSCSCHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHH-HHCCCHHHHHHH
Confidence 467889999999999999999999999988766666688999999999999999988754 45666 489999999999
Q ss_pred HHHHHHHhC
Q 025983 187 KEYIVKQLG 195 (245)
Q Consensus 187 ~~~l~~~l~ 195 (245)
++.|.+...
T Consensus 233 ~~~il~ly~ 241 (285)
T 3rgf_B 233 IRVILKLYE 241 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 32
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.75 E-value=8.3e-05 Score=62.13 Aligned_cols=90 Identities=9% Similarity=-0.023 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHH-------HH-
Q 025983 107 LAFKTIATMSDRLGLVA----TIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEIC-------SV- 174 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~----~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia-------~~- 174 (245)
.+..+|.+++..|+.+. .+...|..+...+......-+.+|..+||||||+|++..+.+++..+.. ..
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46789999999999987 5788888888888777777789999999999999999998765432211 21
Q ss_pred HhCCCHHHHHHHHHHHHHHhCC
Q 025983 175 ANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 175 ~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
..+++..+|..+++.|.+....
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTSS
T ss_pred ccCCCHHHHHHHHHHHHHHHhc
Confidence 1389999999999999876653
No 33
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.67 E-value=0.00017 Score=60.16 Aligned_cols=89 Identities=7% Similarity=0.055 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHH----HHHHH-HhCCCH
Q 025983 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVE-DQKSSRGRNQDALLAACLYIACRQEDKPRTVK----EICSV-ANGATK 180 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~-~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~----dia~~-~~~v~~ 180 (245)
.+..+|.+++..++.+..+...|..+..... ...+.-+..|..+||||||+|++..|.+++.. ..... ..+++.
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~ 224 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 224 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCH
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCH
Confidence 5778999999999999999999999887765 45556689999999999999999988654431 12221 137899
Q ss_pred HHHHHHHHHHHHHhC
Q 025983 181 KEIGRAKEYIVKQLG 195 (245)
Q Consensus 181 ~~i~~~~~~l~~~l~ 195 (245)
.+|..+++.|.+.+.
T Consensus 225 ~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 225 ELLDELTHEFLQILE 239 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 34
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=97.62 E-value=0.00025 Score=59.21 Aligned_cols=87 Identities=11% Similarity=0.136 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCCHHH----HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhC-CCCcC----HHHHHHHHhCC
Q 025983 108 AFKTIATMSDRLGLVATI----KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQE-DKPRT----VKEICSVANGA 178 (245)
Q Consensus 108 ~~~~I~~~~~~L~Lp~~v----~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~-~~~~t----l~dia~~~~~v 178 (245)
+..++..++..++++... ...|..+.....-...+-+.+|..+||||+|+|.+.. +.|.+ ..+++.+ +|+
T Consensus 152 p~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~-tg~ 230 (254)
T 2f2c_A 152 ATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI-LNF 230 (254)
T ss_dssp GGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-HCc
Confidence 456788899999988643 3456666665544444567899999999999999986 44555 7888885 899
Q ss_pred CHHHHHHHHHHHHHHhC
Q 025983 179 TKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 179 ~~~~i~~~~~~l~~~l~ 195 (245)
++.+|..+++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 231 STNTVRTVKDQVSEAFS 247 (254)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988763
No 35
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=97.51 E-value=0.00029 Score=58.91 Aligned_cols=88 Identities=15% Similarity=0.056 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCC------CcCHHHHHHHHh
Q 025983 107 LAFKTIATMSDRLGLVATI----KDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDK------PRTVKEICSVAN 176 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v----~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~------~~tl~dia~~~~ 176 (245)
.+..+|..++..++++... ...|..+.....-...+-+.+|..+||||||+|.+..+. +....+++.+ +
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~-t 228 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASI-L 228 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHH-H
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH-H
Confidence 4678999999999987543 455666666555444456789999999999999998875 3457788885 8
Q ss_pred CCCHHHHHHHHHHHHHHhC
Q 025983 177 GATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 177 ~v~~~~i~~~~~~l~~~l~ 195 (245)
|++..+|..+++.|.+.+.
T Consensus 229 ~~~~~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 229 GCDVSVLQAAVEQILTSVS 247 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 36
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=97.23 E-value=0.0021 Score=45.12 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=62.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCC------CCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHH
Q 025983 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSR------GRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 185 (245)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~------gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~ 185 (245)
|+++|-+||+++ +++.|.+++...... +.. .-+....+||++|.+||.++..+.-..+.+ ..++++..+.+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~-~s~lk~~~f~~ 82 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA-TSGVKKAIFDR 82 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH-TTCBCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH-HHCCCHHHHHH
Confidence 789999999997 778888887775432 211 123447899999999999999999988989 48999999988
Q ss_pred HHHHHHHHh
Q 025983 186 AKEYIVKQL 194 (245)
Q Consensus 186 ~~~~l~~~l 194 (245)
....+.+..
T Consensus 83 l~~~~e~~~ 91 (95)
T 3m03_A 83 LCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776544
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.05 E-value=0.00039 Score=61.03 Aligned_cols=90 Identities=8% Similarity=0.048 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHH----HHHHH-HhCCCH
Q 025983 107 LAFKTIATMSDRLGLVATIKDRANEIYKKVE-DQKSSRGRNQDALLAACLYIACRQEDKPRTVK----EICSV-ANGATK 180 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~-~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~----dia~~-~~~v~~ 180 (245)
.+..+|.+++..|+++..+...|..+..... ...+.-+..|..|||||||+|++..+.+++.. ..... ..+++.
T Consensus 152 ~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~ 231 (358)
T 2pk2_A 152 HPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTL 231 (358)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCH
Confidence 4567899999999999999999999887765 44555678999999999999999988654432 12221 136899
Q ss_pred HHHHHHHHHHHHHhCC
Q 025983 181 KEIGRAKEYIVKQLGL 196 (245)
Q Consensus 181 ~~i~~~~~~l~~~l~~ 196 (245)
.+|..+++.|...+.-
T Consensus 232 ~~l~~i~~~il~~y~~ 247 (358)
T 2pk2_A 232 ELLDELTHEFLQILEK 247 (358)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987753
No 38
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=97.02 E-value=0.0025 Score=54.57 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcC-----HHHHHHHHhCC
Q 025983 108 AFKTIATMSDRLGLVAT----IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT-----VKEICSVANGA 178 (245)
Q Consensus 108 ~~~~I~~~~~~L~Lp~~----v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~t-----l~dia~~~~~v 178 (245)
+..+|..+...++++.. +...|..+.....-...+-+.+|..+||||||+|.+..+.... ...+..+ +|+
T Consensus 171 p~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~-tg~ 249 (306)
T 3g33_B 171 AHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI-TGT 249 (306)
T ss_dssp GGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH-HCC
Confidence 45678888888888743 4456666666554444456789999999999999998874322 3566775 899
Q ss_pred CHHHHHHHHHHHHHHhC
Q 025983 179 TKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 179 ~~~~i~~~~~~l~~~l~ 195 (245)
+..+|..+++.|.+.+.
T Consensus 250 ~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 250 EVDCLRACQEQIEAALR 266 (306)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988775
No 39
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=96.86 E-value=0.00048 Score=44.62 Aligned_cols=31 Identities=32% Similarity=0.777 Sum_probs=28.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
.+||.|+. ..+||+..+-...|..||.+|-+
T Consensus 8 VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCPDCEH-EQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECTTTCC-EEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCC-ceEEEecCceEEEcccCCCEEee
Confidence 47999998 68999999999999999999963
No 40
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=96.82 E-value=0.00094 Score=44.35 Aligned_cols=30 Identities=23% Similarity=0.523 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
+...||.|++ .+.++..+|.++|..||.+.
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKG--RLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCC--BEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCEEeCCCCEEEcCCCCcee
Confidence 4568999997 58889899999999999986
No 41
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.78 E-value=0.0006 Score=43.86 Aligned_cols=31 Identities=35% Similarity=0.754 Sum_probs=28.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
.+||.|+. ..+||++.+-...|..||.+|-+
T Consensus 16 VkCp~C~~-~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCIDCGN-EQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECSSSCC-EEEEESSCSSCEECSSSCCEEEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccCcCCEEec
Confidence 47999998 68999999999999999999963
No 42
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=96.73 E-value=0.0011 Score=43.52 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
+...||.|++ .+.++..+|.++|..||.+.
T Consensus 9 eiL~CP~ck~--~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKG--PLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCC--cCeEeCCCCEEEcCCCCccc
Confidence 3457999997 58889999999999999886
No 43
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=96.72 E-value=0.0011 Score=43.73 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
+...||.|++ .+.++...|.++|..||.+.
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKG--RLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCC--BCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 4568999997 58888889999999999886
No 44
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.69 E-value=0.00067 Score=46.58 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=27.0
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
..||.||+ +.++++.+|...|..||.++...
T Consensus 28 y~Cp~CG~--~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 28 HACPNCGE--DRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp EECSSSCC--EEEEEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCC--cceeccCCCeEECCCCCCEecCC
Confidence 47999997 47899999999999999998643
No 45
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=96.56 E-value=0.0011 Score=43.79 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
...||.|++ .+.++...|.++|..||.+.
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKG--PLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCC--CCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 468999997 47888889999999999886
No 46
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=96.51 E-value=0.001 Score=43.95 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
...||.|++ .+.++...|.++|..||.+.
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKG--PLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 357999997 58888889999999999886
No 47
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=96.49 E-value=0.0011 Score=44.74 Aligned_cols=31 Identities=19% Similarity=0.755 Sum_probs=28.1
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
.+||.|+. ..+||++.+-.+.|..||.||-+
T Consensus 33 VkCp~C~n-~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQN-IQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCC-EEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCC-eeEEEecCccEEEccCCCCEEee
Confidence 47999998 68999999999999999999953
No 48
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=96.47 E-value=0.009 Score=51.85 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhh--CCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 025983 105 LILAFKTIATMSDRLGLVA-TIKDRANEIYKKVED--QKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173 (245)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~~~~--~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~ 173 (245)
..-|..+|..+|+.|+++. .+.+.+..+|..+.. ..++++|..+.+.-+|+|..||..+...++++|-.
T Consensus 215 y~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~ 286 (347)
T 2r7g_A 215 YRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 286 (347)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4457889999999998875 577888888877654 35789999999999999999999999999999987
No 49
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=96.43 E-value=0.0012 Score=44.62 Aligned_cols=31 Identities=26% Similarity=0.675 Sum_probs=28.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
.+||.|+. ..+||++.+-.+.|..||.||-+
T Consensus 35 VkCp~C~~-~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLN-ITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCS-CEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccccCCEEec
Confidence 47999998 68999999999999999999963
No 50
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=96.40 E-value=0.0093 Score=52.85 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhhC--CCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 025983 106 ILAFKTIATMSDRLGLVA-TIKDRANEIYKKVEDQ--KSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173 (245)
Q Consensus 106 ~~~~~~I~~~~~~L~Lp~-~v~~~A~~i~~~~~~~--~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~ 173 (245)
.-|..+|+.+|++|+++. ++.+....+|.....+ .++++|..+.+.-+|+|..||..+..++++||..
T Consensus 280 ~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~ 350 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 350 (411)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 448889999999999875 6778888888776544 5789999999999999999999999999999987
No 51
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.38 E-value=0.014 Score=49.31 Aligned_cols=80 Identities=14% Similarity=0.010 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCCHH-----------HHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 025983 107 LAFKTIATMSDRLGLVAT-----------IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 175 (245)
Q Consensus 107 ~~~~~I~~~~~~L~Lp~~-----------v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~ 175 (245)
.+..+|..++..+++++. ....+..+.....-...+-+.+|..+||||||+|+. ..++..+
T Consensus 150 tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~-------~~~l~~~- 221 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS-------SELMQKV- 221 (283)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC-------HHHHHHH-
T ss_pred CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC-------hHHHHHH-
Confidence 367788899888876532 223344455544422235678999999999999863 6678785
Q ss_pred hCCCHHHHHHHHHHHHHHh
Q 025983 176 NGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 176 ~~v~~~~i~~~~~~l~~~l 194 (245)
+|++..+|..+++.|....
T Consensus 222 tg~~~~~i~~c~~~l~~~~ 240 (283)
T 1w98_B 222 SGYQWCDIENCVKWMVPFA 240 (283)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHH
Confidence 8999999999999887543
No 52
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.23 E-value=0.0015 Score=44.54 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=28.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
.+||.|+. ..+||++.+-.+.|..||.||-+
T Consensus 37 VkCp~C~~-~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQGCFN-ITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECTTTCC-EEEEETTCSSCCCCSSSCCCCSC
T ss_pred EECCCCCC-eeEEEecCCcEEEccCCCCEeec
Confidence 47999998 68999999999999999999963
No 53
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=96.04 E-value=0.021 Score=53.43 Aligned_cols=69 Identities=17% Similarity=0.309 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhC--CCCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q 025983 105 LILAFKTIATMSDRLGLV-ATIKDRANEIYKKVEDQ--KSSRGRNQDALLAACLYIACRQEDKPRTVKEICS 173 (245)
Q Consensus 105 l~~~~~~I~~~~~~L~Lp-~~v~~~A~~i~~~~~~~--~~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~ 173 (245)
..-|..+|..+|..|+++ +.+.+.+..+|...... .++++|+.+.+.-+|+|..||..+..+++++|..
T Consensus 524 y~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~ 595 (656)
T 4elj_A 524 YRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 595 (656)
T ss_dssp HHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 345889999999999877 46888888888877643 5789999999999999999999999999999977
No 54
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=96.02 E-value=0.032 Score=47.55 Aligned_cols=71 Identities=15% Similarity=0.293 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhC-C---CCCCCCHHHHHHHHHHHHHH-hCCCCcCHHHHHHHHhCCCHHHH
Q 025983 111 TIATMSDRLGLVATIKDRANEIYKKVEDQ-K---SSRGRNQDALLAACLYIACR-QEDKPRTVKEICSVANGATKKEI 183 (245)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~-~---~~~gr~~~~iaAA~lY~acR-~~~~~~tl~dia~~~~~v~~~~i 183 (245)
....+|..|+|++.+.++|..+|+.+... + ...+. ....-.||||+||. .++..++|-.+.. +++++..+.
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr-~~~lsi~~F 80 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQK-NIEISVHKF 80 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHH-HHTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHH-HcCCCHHHH
Confidence 46788999999999999999999998764 2 22233 44555566999996 4456788888888 478876654
No 55
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.84 E-value=0.0062 Score=37.56 Aligned_cols=28 Identities=21% Similarity=0.595 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
..||.||+ +.+.. +..+..+|..||.+.
T Consensus 20 k~CP~CG~-~~fm~-~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGP-GVFMA-DHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCS-SCEEE-ECSSEEECSSSCCEE
T ss_pred ccCCCCCC-ceEEe-cCCCeEECCCCCCEE
Confidence 46999998 44444 446789999999874
No 56
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=95.34 E-value=0.043 Score=47.24 Aligned_cols=88 Identities=5% Similarity=0.039 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcCH--HHHHHH-HhC
Q 025983 108 AFKTIATMSDRL-------GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTV--KEICSV-ANG 177 (245)
Q Consensus 108 ~~~~I~~~~~~L-------~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~tl--~dia~~-~~~ 177 (245)
+..+|.+++..| +.|..+...|..+...+......-+..|..|||||||+|++..+.+.+. .++-.. ..+
T Consensus 163 P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~ 242 (323)
T 1jkw_A 163 PYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENR 242 (323)
T ss_dssp SHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSS
T ss_pred hHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhcccccc
Confidence 344555555443 4456778888888888766555557899999999999999998876542 222110 023
Q ss_pred CCHHHHHHHHHHHHHHhC
Q 025983 178 ATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 178 v~~~~i~~~~~~l~~~l~ 195 (245)
.+...|..+.+.|...+.
T Consensus 243 ~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 243 TCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp CCTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 466777777777766554
No 57
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=95.29 E-value=0.039 Score=40.55 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
+..||.|++. ..-.| ...+||.+||.--
T Consensus 27 lP~CP~C~se-ytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSE-YTYED--GALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCC-CCEEC--SSSEEETTTTEEE
T ss_pred CCCCCCCCCc-ceEec--CCeEECCcccccc
Confidence 4689999984 33333 5579999999765
No 58
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=94.94 E-value=0.013 Score=36.79 Aligned_cols=28 Identities=25% Similarity=0.678 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
+..||.||+ ..+ .....+...|..||+.
T Consensus 18 ~~fCPkCG~-~~~-ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGP-GVF-LAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTT-TCC-CEECSSEEECTTTCCC
T ss_pred cccCcCCCC-cee-EeccCCEEECCCCCCE
Confidence 467999997 333 3344578999999997
No 59
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=94.22 E-value=0.33 Score=45.46 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhh-CCC----CCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHH
Q 025983 111 TIATMSDRLGLVATIKDRANEIYKKVED-QKS----SRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEI 183 (245)
Q Consensus 111 ~I~~~~~~L~Lp~~v~~~A~~i~~~~~~-~~~----~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i 183 (245)
....+|..|++++.+.++|.+.|..... .+. +.| ....+.|+.+|.||+.+|..++|-.+-. .++++..+.
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr-~~~lsl~~F 82 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQK-NIEISVHKF 82 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHH-HHTCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHH-HhcCCHHHH
Confidence 5778999999999999999999999874 222 223 4567788889999999999999999988 488887655
No 60
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=94.03 E-value=0.045 Score=34.46 Aligned_cols=27 Identities=22% Similarity=0.673 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCceeeeCCCCceEcc--CCcccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCS--ECGLVL 33 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~--~CG~V~ 33 (245)
...||.|++ .+.++. |+++|. +||...
T Consensus 10 iL~CP~c~~--~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHA--PLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCS--CEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCC--cceecC--CEEEcCCcCCCcEE
Confidence 457999997 366664 999999 999876
No 61
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=93.38 E-value=0.029 Score=31.96 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=19.3
Q ss_pred CCCCCCCC-CceeeeCCCCceEccCCcccc
Q 025983 5 FCSDCKKH-TEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 5 ~Cp~Cg~~-~~iv~d~~~G~~vC~~CG~V~ 33 (245)
.||.|+++ +.++.+...-.+-|..||..-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 59999995 233443334446799999863
No 62
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=93.33 E-value=0.021 Score=34.49 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCceeeeCCCCc----------eEccCCcc
Q 025983 1 MTDAFCSDCKKHTEVVFDHSAGD----------TVCSECGL 31 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~~G~----------~vC~~CG~ 31 (245)
|....|+.||- |+|++.|+ .+|..||.
T Consensus 2 m~~y~C~vCGy----vyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGY----EYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCC----EECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCe----EEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 45556777774 56665553 36777764
No 63
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=92.76 E-value=0.04 Score=34.17 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCceeeeCCCCc
Q 025983 1 MTDAFCSDCKKHTEVVFDHSAGD 23 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~~G~ 23 (245)
|....|+.||- |+|++.|+
T Consensus 1 m~~y~C~~CGy----vYd~~~Gd 19 (52)
T 1e8j_A 1 MDIYVCTVCGY----EYDPAKGD 19 (52)
T ss_dssp CCCEECSSSCC----CCCTTTCC
T ss_pred CCcEEeCCCCe----EEcCCcCC
Confidence 44455666663 35555544
No 64
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=92.63 E-value=0.047 Score=34.07 Aligned_cols=18 Identities=28% Similarity=0.689 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCceeeeCCCC
Q 025983 1 MTDAFCSDCKKHTEVVFDHSAG 22 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~~G 22 (245)
|....|+.||- |+|++.|
T Consensus 1 m~~y~C~vCGy----vYd~~~G 18 (54)
T 4rxn_A 1 MKKYTCTVCGY----IYDPEDG 18 (54)
T ss_dssp CCCEEETTTCC----EECTTTC
T ss_pred CCceECCCCCe----EECCCcC
Confidence 55566777774 5666665
No 65
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=92.49 E-value=0.077 Score=43.86 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=21.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
..||.||+....-++ .+|...|-+||.-
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred CcCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 369999985455555 4688999999975
No 66
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.42 E-value=0.098 Score=37.88 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCceeeeCCCC----ceEccCCccccc
Q 025983 2 TDAFCSDCKKHTEVVFDHSAG----DTVCSECGLVLE 34 (245)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~d~~~G----~~vC~~CG~V~~ 34 (245)
++..||+||+- +......| .++|..||++..
T Consensus 3 ~m~FCp~Cgn~--L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 3 NFQYCIECNNM--LYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCCSSSCCC--CEECCCTTTCCCCEECSSSCCEEC
T ss_pred cceeCcCCCCE--eeEcccCCCCeeEEECCCCCCeEE
Confidence 46789999973 33333222 699999999864
No 67
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=92.31 E-value=0.068 Score=39.28 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCceeee--CCCCceEccCCccccc
Q 025983 1 MTDAFCSDCKKHTEVVFD--HSAGDTVCSECGLVLE 34 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d--~~~G~~vC~~CG~V~~ 34 (245)
|.+..||.||+-=.+..| ...+.++|..||+...
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 567899999972112223 3356799999999764
No 68
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=92.25 E-value=0.062 Score=37.74 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCceeeeCC---------------------------CCceEccCCcccc
Q 025983 1 MTDAFCSDCKKHTEVVFDHS---------------------------AGDTVCSECGLVL 33 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~---------------------------~G~~vC~~CG~V~ 33 (245)
|+...||.|+. .+..+.. +|.++|..||...
T Consensus 6 LdILaCP~cK~--pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 6 LHLLCSPDTRQ--PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVF 63 (97)
T ss_dssp CSSCCCCTTSS--CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEE
T ss_pred hhheECCCCCC--cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCc
Confidence 34568999997 3444544 7899999999986
No 69
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=91.87 E-value=0.049 Score=35.96 Aligned_cols=28 Identities=21% Similarity=0.738 Sum_probs=18.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcc-ccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL-VLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~-V~~ 34 (245)
..|++||.. +.. .....+.|..||. ||-
T Consensus 29 Y~C~~CG~~--~e~-~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 29 YICAECSSK--LSL-SRTDAVRCKDCGHRILL 57 (70)
T ss_dssp EECSSSCCE--ECC-CTTSTTCCSSSCCCCCB
T ss_pred EECCCCCCc--cee-CCCCCccCCCCCceEeE
Confidence 479999973 212 2344577999998 663
No 70
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=91.76 E-value=0.13 Score=32.27 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceeeeC------CCC---ceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDH------SAG---DTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~------~~G---~~vC~~CG~V~~e 35 (245)
..||.||. ...++.. +++ .++|.+||....+
T Consensus 16 ~~Cp~Cg~-~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGN-DTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCC-SEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCC-CEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 46999998 5555432 223 4899999987544
No 71
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.71 E-value=0.093 Score=35.67 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
...||.||+ .. +.....|-.-|..||.++.-.
T Consensus 35 ky~CpfCGk-~~-vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGR-KA-VKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCS-SC-EEEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCC-ce-eEecCcCeEEcCCCCCEEeCC
Confidence 357999998 45 455779999999999998644
No 72
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=91.26 E-value=0.11 Score=34.30 Aligned_cols=31 Identities=32% Similarity=0.400 Sum_probs=25.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
..||.||. +. +.....|-.-|..||.++.-.
T Consensus 27 y~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 27 YDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp BCCSSCCS-SC-BSBCSSSCBCCSSSCCCCCCS
T ss_pred ccCCCCCC-ce-eEecCCCeEECCCCCCEEeCC
Confidence 57999998 44 456789999999999998644
No 73
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=91.21 E-value=0.32 Score=32.44 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 152 AACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 152 AA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
---|+-+.+..|.|....||+.. +|++.++|.+++++|.+.-.+.
T Consensus 21 eekVLe~LkeaG~PlkageIae~-~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKE-CQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHH-HTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH-HCCCHHHHHHHHHHHHHcCCcc
Confidence 34466788889999999999995 9999999999999999876653
No 74
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=90.97 E-value=0.12 Score=35.79 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
...||.||+ .. +.....|-.-|..||.++.-
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 36 KYFCEFCGK-FA-VKRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp CBCCTTTCS-SC-BEEEETTEEECSSSCCEEEC
T ss_pred cccCcccCC-Ce-eEecCcceEEcCCCCCEEeC
Confidence 357999998 45 45577999999999999863
No 75
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=90.96 E-value=0.1 Score=34.63 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=24.9
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
..||.||. .. +.-...|-..|..||.++.-.
T Consensus 28 y~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 28 YKCPVCGF-PK-LKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred ccCCCCCC-ce-eEEEEeEEEECCCCCcEEECC
Confidence 57999998 44 445678999999999998644
No 76
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=90.86 E-value=1.6 Score=35.83 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhCCCCcC----HHHHHHHHhCCC
Q 025983 108 AFKTIATMSDRLGLVAT----IKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRT----VKEICSVANGAT 179 (245)
Q Consensus 108 ~~~~I~~~~~~L~Lp~~----v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~acR~~~~~~t----l~dia~~~~~v~ 179 (245)
+..++..+...++.+.. +...|..+...+.-.-.+-..+|..+||||+..+. .+.+.. ...+..+ .|++
T Consensus 149 p~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l--~~~~~~~~~~~~~L~~~-t~~~ 225 (252)
T 1f5q_B 149 STDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM--NQKYDYYENRIDGVCKS-LYIT 225 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh--ccCCCchhhHHHHHHHH-HCcC
Confidence 67788999999988864 33455554444432222335789999999965544 333333 3456665 8999
Q ss_pred HHHHHHHHHHHHHHhC
Q 025983 180 KKEIGRAKEYIVKQLG 195 (245)
Q Consensus 180 ~~~i~~~~~~l~~~l~ 195 (245)
...|..+++.|.+.+.
T Consensus 226 ~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 226 KEELHQCCDLVDIAIV 241 (252)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988773
No 77
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=90.63 E-value=0.12 Score=37.35 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=24.8
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
..||.||. .. +.-...|-.-|..||.++.-.
T Consensus 61 ytCPfCGk-~~-vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 61 HACPNCGE-DR-VDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp EECSSSCC-EE-EEEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCC-ce-eEecCceeEECCCCCCEEECC
Confidence 46999997 44 445678999999999998643
No 78
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=90.45 E-value=0.14 Score=35.48 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
...||.||. +. +.....|-.-|..||.++.-
T Consensus 36 ky~CpfCgk-~~-vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 36 RYDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCCCSSSCS-SC-CEEEETTEEECTTTCCEEEC
T ss_pred CCcCCCCCC-ce-eeecccceEEcCCCCCEEeC
Confidence 357999998 45 45567999999999999863
No 79
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=90.20 E-value=0.14 Score=36.13 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=24.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
..||.||. +. +.....|-.-|..||.++..
T Consensus 37 y~CpfCgk-~~-vKR~a~GIW~C~kCg~~~AG 66 (103)
T 4a17_Y 37 YGCPFCGK-VA-VKRAAVGIWKCKPCKKIIAG 66 (103)
T ss_dssp EECTTTCC-EE-EEEEETTEEEETTTTEEEEC
T ss_pred CCCCCCCC-ce-eeecCcceEEcCCCCCEEeC
Confidence 46999998 44 55677999999999999863
No 80
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=89.86 E-value=0.17 Score=32.15 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
-+.+||.||. -++ ..+|..||....
T Consensus 5 ~mr~C~~Cgv-YTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGL-YTL-------KEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCSSSCSBCB
T ss_pred hceeCCCCCC-Eec-------cccCcCCCCcCC
Confidence 3578999996 333 678999998875
No 81
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=89.70 E-value=8.3 Score=32.40 Aligned_cols=104 Identities=10% Similarity=0.032 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhC--CC-CCCCCHHHHHHHHHHHHHH-hCCCCcCHHHHHHHHhCCCHHHH
Q 025983 108 AFKTIATMSDRLGLVATIKDRANEIYKKVEDQ--KS-SRGRNQDALLAACLYIACR-QEDKPRTVKEICSVANGATKKEI 183 (245)
Q Consensus 108 ~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~--~~-~~gr~~~~iaAA~lY~acR-~~~~~~tl~dia~~~~~v~~~~i 183 (245)
..++|.++...-.++..+.-.|.-+..++... ++ +...+..-+..+++-+|.+ ..+...+-+..|.+ .|++..+|
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-gGisl~EL 155 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-GGVRCHEL 155 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HTSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-cCcCHHHH
Confidence 35678888888899998888888777777652 22 2345666677777777777 45567889999996 89999999
Q ss_pred HHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhh
Q 025983 184 GRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSN 219 (245)
Q Consensus 184 ~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~ 219 (245)
++.-+++...|+.+ +- +++++|...+...
T Consensus 156 N~LE~eFL~lLdf~------L~-V~~ee~~~cy~E~ 184 (293)
T 2pmi_B 156 NILENDFLKRVNYR------II-PRDHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHTTTTC------CS-CCTTHHHHHHHHS
T ss_pred HHHHHHHHHHcCCc------ee-eCHHHHHHHHHHH
Confidence 99999999998876 22 3455665544444
No 82
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=89.59 E-value=0.18 Score=37.61 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCceeeeC----CCCceEccCCcccc
Q 025983 3 DAFCSDCKKHTEVVFDH----SAGDTVCSECGLVL 33 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~----~~G~~vC~~CG~V~ 33 (245)
+..||+||+ - +.... ....++|..||++.
T Consensus 24 ~~FCPeCgN-m-L~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNN-M-LYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCC-B-CBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCC-E-eeECccCCCceeEEECCCCCCcE
Confidence 468999997 2 22221 12259999999975
No 83
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=89.14 E-value=0.13 Score=32.22 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCceeeeCCCCc
Q 025983 1 MTDAFCSDCKKHTEVVFDHSAGD 23 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~~G~ 23 (245)
|....|+.||- |+|++.|+
T Consensus 1 m~~y~C~~CGy----vYd~~~Gd 19 (55)
T 2v3b_B 1 MRKWQCVVCGF----IYDEALGL 19 (55)
T ss_dssp CCEEEETTTCC----EEETTTCB
T ss_pred CCcEEeCCCCe----EECCCcCC
Confidence 44445666663 45555443
No 84
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=88.18 E-value=0.35 Score=29.54 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCceeee--------CCCCceEccCCccc
Q 025983 3 DAFCSDCKKHTEVVFD--------HSAGDTVCSECGLV 32 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d--------~~~G~~vC~~CG~V 32 (245)
...||.||....+.+. +.+=.++|.+||..
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 3579999984333332 12223799999963
No 85
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=88.18 E-value=0.16 Score=30.58 Aligned_cols=32 Identities=22% Similarity=0.644 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCceeee-CCCCceEccCCccccc
Q 025983 3 DAFCSDCKKHTEVVFD-HSAGDTVCSECGLVLE 34 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d-~~~G~~vC~~CG~V~~ 34 (245)
...|.+|+...+..+. ..+|.++|..||+-..
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k 36 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHK 36 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHHH
Confidence 4679999975333333 3577889999998653
No 86
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=88.10 E-value=0.26 Score=27.89 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
-.+|+.||.--. +.....|.++| ||.=
T Consensus 6 fY~C~~CGnive-v~~~g~~~l~C--CG~~ 32 (36)
T 1dxg_A 6 VYKCELCGQVVK-VLEEGGGTLVC--CGED 32 (36)
T ss_dssp EEECTTTCCEEE-EEECCSSCEEE--TTEE
T ss_pred EEEcCCCCcEEE-EEeCCCcCEEe--CCcc
Confidence 356888875211 22345566777 6543
No 87
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=88.01 E-value=0.29 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=19.0
Q ss_pred CCCCCCCCCCceeeeC------CCCc---------eEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDH------SAGD---------TVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~------~~G~---------~vC~~CG~V~~ 34 (245)
|+||.||. ..++.+. -.|. .+|..||.++=
T Consensus 3 m~Cp~Cg~-~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 3 MKCPVCHQ-GEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp CBCTTTSS-SBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEEC
T ss_pred eECCCCCC-CeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEE
Confidence 78999997 3343221 1232 67999998763
No 88
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=87.81 E-value=0.19 Score=33.12 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=3.7
Q ss_pred CCCCCCC
Q 025983 4 AFCSDCK 10 (245)
Q Consensus 4 ~~Cp~Cg 10 (245)
..|+.||
T Consensus 8 y~C~vCG 14 (70)
T 1dx8_A 8 YECEACG 14 (70)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 4455555
No 89
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=87.26 E-value=0.19 Score=33.99 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=12.0
Q ss_pred CCceEccCCccccccc
Q 025983 21 AGDTVCSECGLVLESH 36 (245)
Q Consensus 21 ~G~~vC~~CG~V~~e~ 36 (245)
....+|..||.|.++.
T Consensus 25 m~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEA 40 (81)
T ss_dssp CCEEEETTTCCEEETT
T ss_pred cceEEeCCCCEEEcCC
Confidence 3468899999888753
No 90
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.12 E-value=0.18 Score=31.00 Aligned_cols=23 Identities=26% Similarity=0.700 Sum_probs=19.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
..||.||+. ...|-..|..||..
T Consensus 15 ~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE------ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc------CCCCceecCCCCCc
Confidence 579999982 45889999999987
No 91
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=87.11 E-value=0.31 Score=32.13 Aligned_cols=27 Identities=22% Similarity=0.565 Sum_probs=21.6
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|| ||.. .+.+...-..-|. ||.++.
T Consensus 5 v~C~-C~~~--~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRA--LYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCC--EEEETTCSEEEET-TTEEEE
T ss_pred EECC-CCCE--EEEcCCCcEEECC-CCCeee
Confidence 3699 9983 5667777789999 999995
No 92
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=86.26 E-value=0.38 Score=32.87 Aligned_cols=32 Identities=19% Similarity=0.459 Sum_probs=23.1
Q ss_pred CCCCCCCCCCce--eeeC--CCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEV--VFDH--SAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~i--v~d~--~~G~~vC~~CG~V~~e 35 (245)
..||.|+...++ ..|- ..|.+.|..||.-.+-
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 469999985334 4443 5678999999987643
No 93
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=84.83 E-value=0.28 Score=29.00 Aligned_cols=31 Identities=29% Similarity=0.855 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceeee-CCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFD-HSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d-~~~G~~vC~~CG~V~~ 34 (245)
..|.+|+...+..+. ...|.++|..||+-..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k 33 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 33 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHH
Confidence 469999975443333 4578899999997653
No 94
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=84.75 E-value=2.3 Score=32.40 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 147 QDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 147 ~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.+.-.-+.+|+|.+..+.|.+.++||+ ..+++...+.+.+..|.+
T Consensus 26 ~~yAlr~L~~LA~~~~~~~~s~~eIA~-~~~i~~~~l~kil~~L~~ 70 (159)
T 3lwf_A 26 GRYGLTITLELAKRIGDGPISLRSIAQ-DKNLSEHYLEQLIGPLRN 70 (159)
T ss_dssp HHHHHHHHHHHHHTTTSCCBCHHHHHH-HHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 445566777888765567999999999 599999999999999976
No 95
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=84.03 E-value=0.27 Score=33.72 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=12.2
Q ss_pred CCceEccCCccccccc
Q 025983 21 AGDTVCSECGLVLESH 36 (245)
Q Consensus 21 ~G~~vC~~CG~V~~e~ 36 (245)
....+|..||+|.++.
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 4468899999988753
No 96
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=83.84 E-value=0.6 Score=36.30 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=21.5
Q ss_pred CCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
.||.|.+. |.+...|...|..||..
T Consensus 44 ACp~CnKK---V~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKS---VLKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCC---EEEETTTEEEETTTTEE
T ss_pred hchhhCCE---eeeCCCCeEECCCCCCC
Confidence 59999984 45778999999999998
No 97
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.67 E-value=1.7 Score=28.89 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=27.2
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
|.|.|+.|||+ ++|+|..++++-+..|.+.
T Consensus 22 g~~psv~EIa~-~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIAD-AAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHH-HHCCCHHHHHHHHHHHHHC
Confidence 78999999999 5999999999999988764
No 98
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=83.54 E-value=0.43 Score=34.96 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCceeee-------C-------CC-CceEccCCccccc
Q 025983 3 DAFCSDCKKHTEVVFD-------H-------SA-GDTVCSECGLVLE 34 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d-------~-------~~-G~~vC~~CG~V~~ 34 (245)
.|+||.||.. ..+.+ . .. -..+|.+||.++-
T Consensus 2 ~M~Cp~Cg~~-~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 2 HMKCPVCHQG-EMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp CCBCTTTSSS-BEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CcCCCcCCCC-ceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 3689999973 22221 1 11 2478999998874
No 99
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=82.24 E-value=1.6 Score=32.56 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 149 ALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 149 ~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.-.-+.+|+|....+.|.+..+||+ ..+++...+.+.+..|.+
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~-~~~i~~~~l~kil~~L~~ 54 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAE-ENNLSDLYLEQLVGPLRN 54 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHH-HTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 3445667777655556899999999 599999999999999976
No 100
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=82.21 E-value=6.9 Score=26.97 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 025983 150 LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190 (245)
Q Consensus 150 iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l 190 (245)
+..++-|+--...+.+.++.++|+. ++++...+.+.+++.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~-~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQH-VCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHH-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHH-HCCCHHHHHHHHHHH
Confidence 4455556665544478999999995 999999998887743
No 101
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=82.20 E-value=0.61 Score=29.55 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
-+.+||.||. -++ ..+|..||....
T Consensus 4 ~mr~C~~Cg~-YTL-------k~~CP~CG~~t~ 28 (60)
T 2aus_D 4 RIRKCPKCGR-YTL-------KETCPVCGEKTK 28 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCTTTCSBCE
T ss_pred cceECCCCCC-EEc-------cccCcCCCCccC
Confidence 3678999996 222 567999998764
No 102
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=81.94 E-value=2.4 Score=27.16 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=27.8
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.++.|.++.|||+ .++++..++.+.++.|.+.
T Consensus 21 ~~~~~~s~~eLA~-~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 21 DDGGPVAIFQLVK-KCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHCSCEEHHHHHH-HHCSCHHHHHHHHHHHHHT
T ss_pred HcCCCcCHHHHHH-HHCcCHHHHHHHHHHHHHC
Confidence 4567899999999 5999999999999988763
No 103
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=81.92 E-value=0.37 Score=31.29 Aligned_cols=33 Identities=27% Similarity=0.776 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCceee-eCCCCceEccCCcccccc
Q 025983 3 DAFCSDCKKHTEVVF-DHSAGDTVCSECGLVLES 35 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~-d~~~G~~vC~~CG~V~~e 35 (245)
...|.+||...+..+ ...+|.++|..||+-..-
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHH
Confidence 357999997533322 234788999999988753
No 104
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=81.89 E-value=8.7 Score=26.20 Aligned_cols=40 Identities=8% Similarity=-0.179 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 025983 150 LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190 (245)
Q Consensus 150 iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l 190 (245)
+..+.-|+--.....+.++.++|+. +++++..|.+.+++.
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~-~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEK-LDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHH-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 3344456655555558999999995 999999998887754
No 105
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=81.84 E-value=3.9 Score=29.47 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 151 LAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 151 aAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
..+..|++-+..+.|.+..|||+ .++++...+.+.+..|.+
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~-~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQ-TNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHH-HTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 34455565544467899999999 599999999999999976
No 106
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=80.59 E-value=0.39 Score=31.60 Aligned_cols=29 Identities=21% Similarity=0.568 Sum_probs=15.3
Q ss_pred CCCCCCCCCCceeeeC---CCCceEccCCcccc
Q 025983 4 AFCSDCKKHTEVVFDH---SAGDTVCSECGLVL 33 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~---~~G~~vC~~CG~V~ 33 (245)
..|.+|+...+..+.. ..| ++|..||+-.
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~ 40 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQ 40 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCC-ccchHHHHHH
Confidence 4566666543334432 334 6666666655
No 107
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=80.21 E-value=1.1 Score=30.34 Aligned_cols=27 Identities=15% Similarity=0.731 Sum_probs=20.1
Q ss_pred CCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
+||.|+. .++.++....+.|..||...
T Consensus 27 wCP~C~~--~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSF--GFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCC--CEECCCSCSCEECTTTCCEE
T ss_pred ECcCCCc--hheecCCCCceEeCCCCCcc
Confidence 6999986 25555556668899999876
No 108
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=79.34 E-value=7 Score=25.13 Aligned_cols=33 Identities=6% Similarity=0.052 Sum_probs=28.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
...+.+|||+. ++++..++......+.+.|+..
T Consensus 30 ~g~s~~eIA~~-l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 30 AGLPNKSIAYD-LDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TTCCHHHHHHH-TTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 34688999995 9999999999999999999864
No 109
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=79.09 E-value=0.43 Score=30.62 Aligned_cols=33 Identities=33% Similarity=0.890 Sum_probs=21.4
Q ss_pred CCCCCCCCCCceeee-CCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFD-HSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d-~~~G~~vC~~CG~V~~e~ 36 (245)
..|.+||...+..+. ...|.++|..||+-..-+
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 468888874333333 356778888888877533
No 110
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=78.89 E-value=1.7 Score=31.68 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=26.9
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 49 (245)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~ 48 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTE 48 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSC
T ss_pred CCCEEEEeCCCCCccccCcccccCCCCChhhCc
Confidence 478999999999988 5567899999999985
No 111
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=78.69 E-value=9.9 Score=26.18 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 025983 149 ALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190 (245)
Q Consensus 149 ~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l 190 (245)
.+..+.-|+--... .+.++.++|+. +++++..+.+.+++.
T Consensus 6 ~i~~~~~~i~~~~~-~~~~~~~lA~~-~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFS-EGMSLKTLGND-FHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTT-SCCCHHHHHHH-HTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 34455566665544 48999999995 899999998887744
No 112
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=78.33 E-value=2.1 Score=31.13 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceeee--------CCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFD--------HSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d--------~~~G~~vC~~CG~V~~ 34 (245)
..||.||....+.+. +.+=.++|.+||..-.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~ 111 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEE
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEec
Confidence 579999985443333 1223489999998643
No 113
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=78.29 E-value=4.2 Score=30.31 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
..-.-+.+|+|-+ .+.|.+.++||+ ..+++...+.+.+..|.+
T Consensus 14 ~yAl~~L~~La~~-~~~~~~~~~iA~-~~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 14 SIAVHILSILKNN-PSSLCTSDYMAE-SVNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHHHHHHS-CGGGCCHHHHHH-HHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCcCHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 3445566677753 567899999999 499999999999999986
No 114
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=77.20 E-value=1.2 Score=32.41 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=27.0
Q ss_pred CCCceEccCCcccc--cccccccCcccccccCC
Q 025983 20 SAGDTVCSECGLVL--ESHSIDETSEWRTFANE 50 (245)
Q Consensus 20 ~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~~ 50 (245)
+.|.++|..||.-| .+.-+|+|.-|.+|.+.
T Consensus 17 e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~ 49 (124)
T 2kv1_A 17 EPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCC
T ss_pred CCEEEEecCCCCcccccCCcccCCCCCceeecc
Confidence 78999999999998 56678999999999753
No 115
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=77.14 E-value=1.4 Score=28.22 Aligned_cols=27 Identities=26% Similarity=0.683 Sum_probs=16.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
..|..||...+ .+ ....+-|.+||.=|
T Consensus 22 Y~C~~Cg~~~~--l~-~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNT--IQ-AKEVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCC--CC-SSSCCCCSSSCCCC
T ss_pred EECCCCCCeee--cC-CCCceECCCCCcEE
Confidence 56888886322 22 24557788888643
No 116
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=76.95 E-value=3.6 Score=25.17 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=28.6
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
..+.+|||+. ++++..++......+.+.|+..
T Consensus 13 g~s~~eIA~~-l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEK-LHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHH-TCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHHHHHHHHCCC
Confidence 4578999995 9999999999999999999864
No 117
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=76.79 E-value=1 Score=27.63 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=6.7
Q ss_pred eEccCCcccccc
Q 025983 24 TVCSECGLVLES 35 (245)
Q Consensus 24 ~vC~~CG~V~~e 35 (245)
.+|..||.|.++
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 456666666543
No 118
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=76.63 E-value=7.6 Score=26.61 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=34.4
Q ss_pred HHHHHHhCCC-CcCHHHHHHHHh-CCCHHHHHHHHHHHHHHhC
Q 025983 155 LYIACRQEDK-PRTVKEICSVAN-GATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 155 lY~acR~~~~-~~tl~dia~~~~-~v~~~~i~~~~~~l~~~l~ 195 (245)
|+.+|++.|. +.++..||.. + +-++..+...|++|++.+.
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~-L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQ-LGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHH-HSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHH-HccCCHHHHHHHHHHHHHHHH
Confidence 5678888886 8999999995 7 5999999999999998875
No 119
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=76.44 E-value=14 Score=25.36 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 025983 150 LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190 (245)
Q Consensus 150 iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l 190 (245)
+..+.-|+.-.. ..+.++.++|+. +++++..+.+.+++.
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~-~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTAL-TGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHH-HTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHH-HCCCHHHHHHHHHHH
Confidence 444555655443 557999999995 999999999887754
No 120
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=75.36 E-value=1.4 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.594 Sum_probs=17.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~ 37 (245)
..||.||. . ..-.-+|.+||+-=+-.+
T Consensus 31 ~~c~~cG~-~------~~pH~vc~~CG~Y~gr~v 57 (60)
T 2zjr_Z 31 TECPQCHG-K------KLSHHICPNCGYYDGRQV 57 (60)
T ss_dssp EECTTTCC-E------ECTTBCCTTTCBSSSBCS
T ss_pred eECCCCCC-E------eCCceEcCCCCcCCCEEe
Confidence 46888886 2 134788999997644333
No 121
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=74.84 E-value=4.3 Score=27.54 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=28.5
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
..+.+|||+. ++++..++....+.+.+.|+..
T Consensus 44 G~s~~eIA~~-L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 44 GFTNQEIADA-LHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 3478999995 9999999999999999999975
No 122
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=74.68 E-value=2.1 Score=35.49 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
...||.||+. .. .....-..+|..||.+.-
T Consensus 107 ~~fC~~CG~~-~~-~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGHE-MY-PSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCCB-EE-ECSSSSCEEESSSSCEEC
T ss_pred CCccccCCCc-Cc-cCCCceeeeCCCCCCEec
Confidence 4689999983 33 333444689999998764
No 123
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=74.56 E-value=0.97 Score=34.95 Aligned_cols=29 Identities=21% Similarity=0.653 Sum_probs=19.4
Q ss_pred CCCCCCCC-CceeeeCCCC--ceEccCCcccc
Q 025983 5 FCSDCKKH-TEVVFDHSAG--DTVCSECGLVL 33 (245)
Q Consensus 5 ~Cp~Cg~~-~~iv~d~~~G--~~vC~~CG~V~ 33 (245)
.||.|+++ +.++.|...+ .+.|..||..-
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 59999995 3444432333 47899999864
No 124
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=74.37 E-value=1.2 Score=31.49 Aligned_cols=31 Identities=29% Similarity=0.694 Sum_probs=26.7
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 49 (245)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 9 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 41 (105)
T 3mao_A 9 FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTE 41 (105)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESC
T ss_pred CCCEEEEcCCCCCccccCCcccCCCCCChhhcc
Confidence 468999999999988 5567899999999985
No 125
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.05 E-value=1.4 Score=33.69 Aligned_cols=30 Identities=20% Similarity=0.594 Sum_probs=20.0
Q ss_pred CCCCCCCCC-CceeeeCCC--CceEccCCcccc
Q 025983 4 AFCSDCKKH-TEVVFDHSA--GDTVCSECGLVL 33 (245)
Q Consensus 4 ~~Cp~Cg~~-~~iv~d~~~--G~~vC~~CG~V~ 33 (245)
..||.|+++ +.++.|.+. =.+.|..||..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 369999996 334443333 347899999874
No 126
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=73.67 E-value=1.9 Score=36.66 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCc--eeee--CCCC--ceEccCCccc
Q 025983 3 DAFCSDCKKHTE--VVFD--HSAG--DTVCSECGLV 32 (245)
Q Consensus 3 ~~~Cp~Cg~~~~--iv~d--~~~G--~~vC~~CG~V 32 (245)
...||.||+.+. ++.. ..+| .+.|.-||+-
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~ 217 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACE 217 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCE
Confidence 368999999642 2321 1466 3899989853
No 127
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=73.37 E-value=5.8 Score=26.49 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=28.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
...|+.|||.. +|++..++.....+..+.|..
T Consensus 37 ~~~s~~EIA~~-lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQY-FNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Confidence 67899999995 999999999988888887764
No 128
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=73.08 E-value=1.2 Score=28.24 Aligned_cols=24 Identities=38% Similarity=0.801 Sum_probs=16.0
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..||.||.. . .-.-||.+||+-=+
T Consensus 31 ~~c~~cGe~---~----~~H~vc~~CG~Y~g 54 (60)
T 3v2d_5 31 VPCPECKAM---K----PPHTVCPECGYYAG 54 (60)
T ss_dssp EECTTTCCE---E----CTTSCCTTTCEETT
T ss_pred eECCCCCCe---e----cceEEcCCCCcCCC
Confidence 468888862 1 23678999996543
No 129
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=72.72 E-value=2.3 Score=28.65 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
|+ ..||.|+.+ +.. ..+...|..||.-+.
T Consensus 1 M~-~~CP~C~~~--l~~--~~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 1 ME-ITCPVCHHA--LER--NGDTAHCETCAKDFS 29 (81)
T ss_dssp CC-CCCSSSCSC--CEE--CSSEEECTTTCCEEE
T ss_pred CC-CCCCCCCCc--ccc--CCCceECccccccCC
Confidence 66 789999973 444 345666888888664
No 130
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=72.41 E-value=1.8 Score=33.65 Aligned_cols=27 Identities=30% Similarity=0.709 Sum_probs=21.7
Q ss_pred CCCC--CCCCCceeeeCCCCceEccCCccccc
Q 025983 5 FCSD--CKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 5 ~Cp~--Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
.||. |++. +.+...|...|..|+...+
T Consensus 45 aC~~~~CnKK---v~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKK---VIDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCB---CEEETTTEEEETTTTEEES
T ss_pred CCCchhcCCc---cccCCCCeEECCCCCCcCC
Confidence 5999 9983 4566789999999997764
No 131
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.36 E-value=1.9 Score=29.95 Aligned_cols=28 Identities=29% Similarity=0.755 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
|+ ..||.|+. ++..+ .|...|..|+.-+
T Consensus 31 M~-~~CP~Cq~--eL~~~--g~~~hC~~C~~~f 58 (101)
T 2jne_A 31 ME-LHCPQCQH--VLDQD--NGHARCRSCGEFI 58 (101)
T ss_dssp CC-CBCSSSCS--BEEEE--TTEEEETTTCCEE
T ss_pred cc-ccCccCCC--cceec--CCEEECccccchh
Confidence 45 68999997 35543 5566699998754
No 132
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=72.34 E-value=17 Score=25.19 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 025983 149 ALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190 (245)
Q Consensus 149 ~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l 190 (245)
.+..+.-|+-- ....+.++.++|+. ++++...|.+.+++.
T Consensus 8 ~i~~~~~~i~~-~~~~~~~~~~lA~~-~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEA-NIEEPLSTDDIAYY-VGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHT-CSSSCCCHHHHHHH-HTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 34445555543 33567999999995 899999998887744
No 133
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=72.07 E-value=1.6 Score=38.16 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=11.8
Q ss_pred eEccCCccccccccc
Q 025983 24 TVCSECGLVLESHSI 38 (245)
Q Consensus 24 ~vC~~CG~V~~e~~i 38 (245)
..|.+||.|..+...
T Consensus 54 ~~C~~Cg~v~~~~~~ 68 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEV 68 (416)
T ss_dssp EEETTTCCEEESSCC
T ss_pred EECCCCCceeecCcC
Confidence 579999999876554
No 134
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=72.07 E-value=2 Score=32.43 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=27.3
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccCC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFANE 50 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~~ 50 (245)
.+.|.++|..||.-| .+.-+|+|.-|.+|.+.
T Consensus 57 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 90 (151)
T 2k8d_A 57 HDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDV 90 (151)
T ss_dssp CSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCC
T ss_pred CCCEEEEecCCCCcccCCcccccCCCCCcccCcc
Confidence 578999999999988 55678899999999853
No 135
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=71.99 E-value=1.9 Score=32.23 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=27.0
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccCC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFANE 50 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~~ 50 (245)
.+.|.++|..||.-| .+.-+|+|.-|.+|.+.
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 66 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 66 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSC
T ss_pred cCCeEEEeCCCCCeeecCcccccCCCCChhhchh
Confidence 578999999999988 55678999999999853
No 136
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=71.91 E-value=3.1 Score=35.34 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=21.0
Q ss_pred CCCCCCCCCCceeeeCCCC-----------ceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAG-----------DTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G-----------~~vC~~CG~V~~ 34 (245)
.+||+||....+.+=.-+| -.+|..||..+.
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 5799999854443322222 379999998873
No 137
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=71.85 E-value=6.8 Score=25.76 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+.+.|..|||.. ++++..+|++.+..|.+.
T Consensus 29 ~~~~t~~eLA~~-Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 29 GKATTAHDLSGK-LGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp SSCEEHHHHHHH-HCCCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 458999999995 999999999999999764
No 138
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=71.69 E-value=1.5 Score=31.60 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=15.4
Q ss_pred ceeeeCCCCceEccCCccccc
Q 025983 14 EVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 14 ~iv~d~~~G~~vC~~CG~V~~ 34 (245)
.+......+...|.+||...+
T Consensus 64 ~L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 64 ILDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp CEEEEEECCEEECSSSSCEEC
T ss_pred EEEEEeccceEEcCCCCCEEe
Confidence 455566677888888888775
No 139
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=71.13 E-value=1.5 Score=30.44 Aligned_cols=22 Identities=23% Similarity=0.857 Sum_probs=17.0
Q ss_pred CCCCCCCCCceeeeCCCCceEccCCcc
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSECGL 31 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~CG~ 31 (245)
.||.||. ...-.+ ...|..||+
T Consensus 18 lCrRCG~-~sfH~q----K~~CgkCGY 39 (97)
T 2zkr_2 18 LCRRCGS-KAYHLQ----KSTCGKCGY 39 (97)
T ss_dssp CCTTTCS-SCEETT----SCCBTTTCT
T ss_pred cCCCCCC-ccCcCc----cccCcccCC
Confidence 6999998 454332 679999999
No 140
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=70.91 E-value=6.2 Score=26.36 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=25.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.+.|..|||.. ++++..+|++.+..|.+.
T Consensus 26 ~~~t~~eLA~~-Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 26 KATTAHDLSGK-LGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 57999999995 999999999999999763
No 141
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=70.30 E-value=1.9 Score=33.02 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=27.0
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccCC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFANE 50 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~~ 50 (245)
.+.|.++|..||.-| .+.-+|+|.-|.+|.+.
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~p 102 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKP 102 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEccCCCccccCCchhccCCCCCcccCcc
Confidence 468999999999988 55668899999999853
No 142
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=70.19 E-value=8.9 Score=26.31 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=36.8
Q ss_pred CCCCHHHHHH--HHHHHHHHhCCCCcCHHHHHHHHh-CCCHHHHHHHHHHHHHHhC
Q 025983 143 RGRNQDALLA--ACLYIACRQEDKPRTVKEICSVAN-GATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 143 ~gr~~~~iaA--A~lY~acR~~~~~~tl~dia~~~~-~v~~~~i~~~~~~l~~~l~ 195 (245)
++|+.....| .+.|++-.+ ...+|.+|+.. + |.+..++..+++++.+.+.
T Consensus 24 ~~R~~~i~~aRqiamyL~r~~--t~~Sl~~IG~~-fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 24 KRRSRSVARPRQMAMALAKEL--TNHSLPEIGDA-FGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--SCCCHHHHHHH-TTSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHH--HCcCHHHHHHH-hCCCCHHHHHHHHHHHHHHHH
Confidence 3454443332 566776554 56789999995 8 8999999999999988775
No 143
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=69.98 E-value=9.4 Score=25.12 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=28.6
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
..+.+|||+. ++++..++......+.+.|+..
T Consensus 36 g~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 36 GLPNKMIARR-LDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 4689999995 9999999999999999999864
No 144
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=69.90 E-value=17 Score=22.67 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=28.5
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
..+.+|||+. ++++..++......+.+.|+..
T Consensus 26 g~s~~eIA~~-l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 26 DKTTKEIASE-LFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHHHCCC
Confidence 3489999995 9999999999999999999864
No 145
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=69.73 E-value=3.1 Score=33.79 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=22.6
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~ 31 (245)
..|-.||......+++..|-.+|.+|..
T Consensus 151 ~~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 151 ARCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred CccccCCCCCCCcEecccCEEECcccCC
Confidence 4699999754457889999999999964
No 146
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=69.68 E-value=2 Score=32.15 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=26.8
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 49 (245)
.+.|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 38 ~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~ 70 (144)
T 3e0o_A 38 KEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTK 70 (144)
T ss_dssp CCSEEEEETTTCCEEEETTTBCCCTTSSCEESC
T ss_pred CCCEEEEeCCCCcccccCcccccCCCCCcccCc
Confidence 468999999999988 5567899999999985
No 147
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=69.23 E-value=3.4 Score=31.45 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 150 LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 150 iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
-.-+.+|+|.. .+.|.+..+||+ ..+++...|++.+..|.+
T Consensus 14 Alr~l~~La~~-~~~~~s~~~IA~-~~~is~~~l~kil~~L~~ 54 (162)
T 3k69_A 14 AVHSILYLDAH-RDSKVASRELAQ-SLHLNPVMIRNILSVLHK 54 (162)
T ss_dssp HHHHHHHHHTT-TTSCBCHHHHHH-HHTSCGGGTHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCcCHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 34455677754 467899999999 499999999999999986
No 148
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=68.48 E-value=25 Score=23.99 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHH-HHHHHHHHHHhC-CCCcCHHHHHHHHhCC-CHHHHHHHHH
Q 025983 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDAL-LAACLYIACRQE-DKPRTVKEICSVANGA-TKKEIGRAKE 188 (245)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~i-aAA~lY~acR~~-~~~~tl~dia~~~~~v-~~~~i~~~~~ 188 (245)
+.++|..++++.....+ +|+... |.++... --.=+-.|+++. ....++.|||.. +|- +...+.+.|+
T Consensus 24 ~~~lA~~~~~S~~~l~r---~fk~~~------G~s~~~~~~~~Rl~~A~~lL~~~~~si~~IA~~-~Gf~~~s~F~r~Fk 93 (108)
T 3oou_A 24 LKTLGNDFHINAVYLGQ---LFQKEM------GEHFTDYLNRYRVNYAKEELLQTKDNLTIIAGK-SGYTDMAYFYRQFK 93 (108)
T ss_dssp HHHHHHHHTSCHHHHHH---HHHHHH------SSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-TTCCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHHHH------CcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-cCCCChHHHHHHHH
Confidence 77888889998755443 666654 3333322 222222333322 345789999994 887 6777777766
Q ss_pred HHHHHhCC
Q 025983 189 YIVKQLGL 196 (245)
Q Consensus 189 ~l~~~l~~ 196 (245)
+..|+
T Consensus 94 ---~~~G~ 98 (108)
T 3oou_A 94 ---KHTGE 98 (108)
T ss_dssp ---HHHSS
T ss_pred ---HHhCc
Confidence 45554
No 149
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=68.38 E-value=18 Score=28.52 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.|..++|.+.
T Consensus 176 ~~~t~~~iA~~-lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEI-TGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 57899999995 999999999999999864
No 150
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=68.23 E-value=7.7 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=28.2
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
...|++|||+. +|++..++.....+..+.|..
T Consensus 24 ~g~s~~eIA~~-lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 24 TDYTLEEVGKQ-FDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHH
Confidence 57899999995 999999999998888888764
No 151
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=68.07 E-value=3.3 Score=31.95 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCceeeeC--CCC-ceEccCCcc
Q 025983 3 DAFCSDCKKHTEVVFDH--SAG-DTVCSECGL 31 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~--~~G-~~vC~~CG~ 31 (245)
...||.||.. ..+..+ ..+ ..+|..||.
T Consensus 3 ~~~C~~CG~~-~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE-VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB-CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc-cccccccCCCCcceECCCCCC
Confidence 3689999984 333222 222 469999994
No 152
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=67.97 E-value=2 Score=32.21 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=26.8
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 49 (245)
.+.|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 71 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTR 71 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESS
T ss_pred CCCEEEEecCCCcccccCcccccCCCCChhhcc
Confidence 478999999999988 5567899999999985
No 153
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=67.89 E-value=2.4 Score=34.45 Aligned_cols=29 Identities=17% Similarity=0.646 Sum_probs=18.6
Q ss_pred CCCCCCCCCCce---eeeCCCCceEccCCcccc
Q 025983 4 AFCSDCKKHTEV---VFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 4 ~~Cp~Cg~~~~i---v~d~~~G~~vC~~CG~V~ 33 (245)
+.||+||+. .+ --+.--.+..|.+|+.-.
T Consensus 35 ~yCPnCG~~-~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNN-PLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCCS-SCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCCh-hhhhccCCCcccccccCCcchhh
Confidence 579999983 33 112245678999998655
No 154
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=66.90 E-value=19 Score=25.63 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l 190 (245)
....+..+.-|+-.. ...+.++.++|+. ++++...+.+.+++.
T Consensus 9 ~~~~i~~~~~~i~~~-~~~~~sl~~lA~~-~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 9 DAITIHSILDWIEDN-LESPLSLEKVSER-SGYSKWHLQRMFKKE 51 (129)
T ss_dssp CHHHHHHHHHHHHTT-TTSCCCCHHHHHH-SSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-cCCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 344455555565433 3456999999995 999999998887754
No 155
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=66.83 E-value=2.4 Score=32.10 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=26.9
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 49 (245)
.+.|.++|..||.-| .+.-+|.|.-|.+|.+
T Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (154)
T 3hcj_A 46 KLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78 (154)
T ss_dssp CSSEEEEETTTCCEEEEECTTCCCCTTSSTTEE
T ss_pred CCCEEEEccCCCCccccCcccccCCCCCccccc
Confidence 578999999999988 5667899999999975
No 156
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=66.40 E-value=2.5 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=19.1
Q ss_pred CCCCCCCCCCC----ceeeeCCCCceEccCCcccc
Q 025983 3 DAFCSDCKKHT----EVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 3 ~~~Cp~Cg~~~----~iv~d~~~G~~vC~~CG~V~ 33 (245)
+..|.-||... .+|.- .|..||.+|=..-
T Consensus 18 ~~~CSFCGK~e~eV~~LIaG--pgvyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAG--PSVYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEEC--SSCEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCC--CCCChhHHHHHHH
Confidence 46899999742 23332 3678999985443
No 157
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=66.09 E-value=17 Score=23.84 Aligned_cols=55 Identities=4% Similarity=-0.106 Sum_probs=38.1
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQE 232 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~ 232 (245)
.....|+.++|+. +|++..+|.+..+ |.. .| +.+.+.+++..|++++....+...
T Consensus 24 ~~~gltq~elA~~-~gis~~~is~~E~------G~~------~p---~~~~l~~ia~~l~v~~~~~~l~~~ 78 (86)
T 3eus_A 24 LDAGLTQADLAER-LDKPQSFVAKVET------RER------RL---DVIEFAKWMAACEGLDVVSEIVAT 78 (86)
T ss_dssp HHTTCCHHHHHHH-TTCCHHHHHHHHT------TSS------CC---BHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHcCCCHHHHHHH-hCcCHHHHHHHHC------CCC------CC---CHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3456899999995 9999988876532 221 12 346788999999998765544433
No 158
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=66.07 E-value=9.1 Score=25.99 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=27.8
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 166 RTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
.+.+|||.. ++++..++...+..+.+.|+..
T Consensus 43 ~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADR-MFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 477999995 9999999999999999999865
No 159
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=65.71 E-value=9.4 Score=26.37 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=28.4
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
..+.+|||+. +++++.++......+.+.|+..
T Consensus 49 G~s~~EIA~~-L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 49 GFLVTEIAKK-LNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 3478999995 9999999999999999999975
No 160
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=65.60 E-value=4.2 Score=27.10 Aligned_cols=31 Identities=16% Similarity=0.573 Sum_probs=22.9
Q ss_pred CCCCCCC--CCCCCceeeeCCCCceEcc-----CCccccc
Q 025983 2 TDAFCSD--CKKHTEVVFDHSAGDTVCS-----ECGLVLE 34 (245)
Q Consensus 2 ~~~~Cp~--Cg~~~~iv~d~~~G~~vC~-----~CG~V~~ 34 (245)
...+||. |+. .+..++....+.|. .||...=
T Consensus 24 ~~~~CP~p~C~~--~v~~~~~~~~v~C~~~~~~~C~~~FC 61 (80)
T 2jmo_A 24 GGVLCPRPGCGA--GLLPEPDQRKVTCEGGNGLGCGFAFC 61 (80)
T ss_dssp SSCCCCSSSCCC--CCCCCSCTTSBCTTSSSTTCCSCCEE
T ss_pred CcEECCCCCCCc--ccEECCCCCcCCCCCCCCCCCCCeec
Confidence 3568999 886 35556666778998 8998773
No 161
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=65.60 E-value=2.8 Score=30.69 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=18.8
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
.+|+.||.- -.+.....|.++| ||.-++
T Consensus 8 YkC~~CGni-vev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 8 YKCEVCGNI-VEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp EECTTTCCE-EEEEECCSSCEEE--TTEECE
T ss_pred EEcCCCCeE-EEEEcCCCcceec--CCcccc
Confidence 579999962 1223556677888 887664
No 162
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=65.59 E-value=4.7 Score=28.16 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=21.2
Q ss_pred CCCCCCCC-CceeeeCCCCceEccCCc
Q 025983 5 FCSDCKKH-TEVVFDHSAGDTVCSECG 30 (245)
Q Consensus 5 ~Cp~Cg~~-~~iv~d~~~G~~vC~~CG 30 (245)
.||.|+.. +++.+++..|...|-.||
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg 65 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCG 65 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCC
Confidence 59999853 467778888889999998
No 163
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=65.46 E-value=11 Score=26.98 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=29.7
Q ss_pred HHHHHHhCCCC-cCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 155 LYIACRQEDKP-RTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 155 lY~acR~~~~~-~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
||.+....+-| .|..|||+. ++++..++.+..+.|.+
T Consensus 31 il~~L~~~~~~~~t~~eLa~~-l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKS-LKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 34444456667 999999995 99999999999999875
No 164
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=64.99 E-value=16 Score=27.68 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+ .+|++..++.+..++|.+.
T Consensus 138 ~~~t~~~lA~-~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIAD-ATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHH-TTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHH-HhCCCHHHHHHHHHHHHHC
Confidence 5789999999 4999999999999999764
No 165
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=64.87 E-value=16 Score=22.08 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=33.3
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|..++|.. +|++..+|.+..+ |.. .| +.+.+.+++..|+++.+
T Consensus 13 ~g~s~~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 13 KKISQSELAAL-LEVSRQTINGIEK------NKY------NP---SLQLALKIAYYLNTPLE 58 (66)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHT------TSC------CC---CHHHHHHHHHHTTSCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCcCHH
Confidence 45789999995 8999988876543 211 11 34678899999999865
No 166
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=64.80 E-value=11 Score=23.95 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=25.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~ 195 (245)
.+.|..|||+. +|++..++........+.|.
T Consensus 29 ~~~s~~eIA~~-l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAY-FGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 57899999995 99999999987776666664
No 167
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=64.26 E-value=3 Score=25.43 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=16.9
Q ss_pred CCCCCCCCCCC----ceeeeCCCCceEccCCc
Q 025983 3 DAFCSDCKKHT----EVVFDHSAGDTVCSECG 30 (245)
Q Consensus 3 ~~~Cp~Cg~~~----~iv~d~~~G~~vC~~CG 30 (245)
+.+|.-||+.. .++.- .|-.||.+|=
T Consensus 11 ~~~CSFCGk~~~ev~~LIaG--pgv~IC~eCi 40 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAG--PSVYICDECV 40 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEEC--SSCEEEHHHH
T ss_pred CcEecCCCCCHHHhcccCCC--CCCEehHHHH
Confidence 46799999742 22322 3678998884
No 168
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=64.19 E-value=15 Score=26.27 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRR 215 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r 215 (245)
..+.++.++|.. +|++...+.+.|+ +.+|+ .|.+|+.+
T Consensus 91 ~~~~sl~~lA~~-~g~S~~~f~r~Fk---~~~G~-----------tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQ-VAMSPFHLHRLFK---ATTGM-----------TPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHH-HTSCHHHHHHHHH---HHTSS-----------CHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHH---HHHCc-----------CHHHHHHH
Confidence 568999999995 9999999988877 45564 47788764
No 169
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=63.91 E-value=17 Score=22.07 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=33.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQA 226 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 226 (245)
...|+.++|.. +|++..+|.+..+ |.. .| +.+.+.+++..|+++.+.
T Consensus 17 ~g~s~~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~i~~~l~~~~~~ 63 (68)
T 2r1j_L 17 LKIRQAALGKM-VGVSNVAISQWER------SET------EP---NGENLLALSKALQCSPDY 63 (68)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------TSS------CC---BHHHHHHHHHHTTSCHHH
T ss_pred cCCCHHHHHHH-HCCCHHHHHHHHc------CCC------CC---CHHHHHHHHHHhCCCHHH
Confidence 34689999995 8999988866532 211 12 357789999999998653
No 170
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=63.81 E-value=19 Score=23.40 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=25.7
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-+.+..|||+. ++++..++.+.++.|.+.
T Consensus 13 ~~~s~~eLa~~-lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEA-LAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999764
No 171
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=63.16 E-value=2.4 Score=30.60 Aligned_cols=31 Identities=23% Similarity=0.611 Sum_probs=22.7
Q ss_pred CCCCCCCCCCcee-eeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv-~d~~~G~~vC~~CG~V~~ 34 (245)
..|.+||...+.. ....+|.++|..||+...
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 6799999743332 224678999999999774
No 172
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=62.47 E-value=28 Score=24.33 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHH
Q 025983 149 ALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEY 189 (245)
Q Consensus 149 ~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~ 189 (245)
.+..++-|+--.. ..++++.++|+. ++++...|.+.+++
T Consensus 8 ~~~~~~~~i~~~~-~~~~~~~~lA~~-~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNI-AHEWTLARIASE-LLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTST-TSCCCHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHH-HCcCHHHHHHHHHH
Confidence 3444455554333 348999999995 99999999888764
No 173
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=61.80 E-value=19 Score=28.35 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=26.5
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
..|.|..+||+. +|++..++.|..++|.+.
T Consensus 191 ~~~lt~~~lA~~-lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEA-IGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHH-HCCcHHHHHHHHHHHHHC
Confidence 357899999995 999999999999999863
No 174
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=61.55 E-value=2.6 Score=30.40 Aligned_cols=13 Identities=54% Similarity=1.226 Sum_probs=6.3
Q ss_pred CCceEccCCcccc
Q 025983 21 AGDTVCSECGLVL 33 (245)
Q Consensus 21 ~G~~vC~~CG~V~ 33 (245)
+|+++|..||+-.
T Consensus 78 ~g~~lCNaCgl~~ 90 (115)
T 4hc9_A 78 NGDPVCNACGLYY 90 (115)
T ss_dssp TSCEECHHHHHHH
T ss_pred CCCCcchHHHHHH
Confidence 3445555555444
No 175
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=61.12 E-value=24 Score=27.46 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.|..++|.+.
T Consensus 185 ~~~t~~~lA~~-lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARC-LDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHH-hCCChhHHHHHHHHHHHC
Confidence 57899999995 999999999999999763
No 176
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=60.87 E-value=9 Score=25.66 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=28.4
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
..+.+|||.. ++++..++......+.+.|+..
T Consensus 44 g~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASA-SHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHH-HTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 4678899995 9999999999999999999864
No 177
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=60.87 E-value=3.5 Score=32.86 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|+.||.... .......+|..||.+..
T Consensus 11 ~~Cw~C~~~~~---~~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 11 PRCWNCGGPWG---PGREDRFFCPQCRALQA 38 (207)
T ss_dssp CBCSSSCCBCC---SSCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCCcc---cccccccccccccccCC
Confidence 57999997311 12456899999998875
No 178
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=60.81 E-value=8.5 Score=24.42 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=31.5
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
.|++|||.. +||+..++.++++-=...++ + ..+...-|.+.+.+||..++
T Consensus 1 ~T~~diA~~-aGVS~sTVSrvLng~~~~~~--------v-s~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 1 MKLDEIARL-AGVSRTTASYVINGKAKQYR--------V-SDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHTCTTTTT--------C-TTHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHH-HCcCHHHHHHHHcCCCCCCC--------C-CHHHHHHHHHHHHHhCCCcc
Confidence 478999995 89999999988651000001 1 12334566777778887544
No 179
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=60.63 E-value=18 Score=27.65 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=26.2
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.|..++|.+.
T Consensus 168 ~~~t~~~lA~~-lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 168 LKITHETIANH-LGSHREVITRMLRYFQVE 196 (220)
T ss_dssp ECCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 58899999995 999999999999999763
No 180
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=59.70 E-value=21 Score=27.17 Aligned_cols=84 Identities=11% Similarity=0.222 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHhC--CCHHHHHHHHHHHHHHhC-----Ccc---CCcccc-CCCCHHhHHHHHh
Q 025983 149 ALLAACLYIACRQEDKPRTVKEICSVANG--ATKKEIGRAKEYIVKQLG-----LET---GQSVEM-GTIHAGDFMRRFC 217 (245)
Q Consensus 149 ~iaAA~lY~acR~~~~~~tl~dia~~~~~--v~~~~i~~~~~~l~~~l~-----~~~---~~~~~~-~~~~p~~~i~r~~ 217 (245)
.++=|.+|++ +.|+++.+++.+ ++ ++..++......|...+. ++. +..+.+ ...+-..||.++.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~-~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~ 84 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQI-TAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLL 84 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHH-hCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHh
Confidence 4566777765 789999999995 89 999999999999987653 211 111111 1123456787776
Q ss_pred hhcCCCHHHHHHHHHHHHHhh
Q 025983 218 SNLGMNNQAVKAAQEAVQKSE 238 (245)
Q Consensus 218 ~~L~l~~~v~~~A~~i~~~~~ 238 (245)
.. .-+....+.|.+++....
T Consensus 85 ~~-~~~~~LS~aaLEtLaiIa 104 (162)
T 1t6s_A 85 AP-VIQRRLSRSMLEVLAVVA 104 (162)
T ss_dssp SC-HHHHHHHHHHHHHHHHHH
T ss_pred cc-cccCccCHHHHHHHHHHH
Confidence 42 112345566666555443
No 181
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.61 E-value=14 Score=22.90 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=25.1
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~ 195 (245)
..+..|||.. +|++..++.+...+..+.|.
T Consensus 31 g~s~~eIA~~-lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 31 GLSYADAAAV-CGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp CCCHHHHHHH-HTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 4689999995 99999999988887777664
No 182
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=59.38 E-value=4.1 Score=27.27 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCce
Q 025983 1 MTDAFCSDCKKHTEV 15 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~i 15 (245)
|....||.||. .++
T Consensus 28 ~~k~FCp~CGn-~TL 41 (79)
T 2con_A 28 MNRVFCGHCGN-KTL 41 (79)
T ss_dssp SSCCSCSSSCC-SCC
T ss_pred cccccccccCc-ccc
Confidence 55678888887 344
No 183
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=59.33 E-value=19 Score=25.08 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=37.4
Q ss_pred CCCCHHHHHH--HHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 025983 143 RGRNQDALLA--ACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 143 ~gr~~~~iaA--A~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
++|+...+-| .+.|++-.+ ...+|.+|+.. +|-+-.++..+++++.+.+.-
T Consensus 28 ~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~-fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 28 PGKTRALAQSRQIAMYLCREL--TDLSLPKIGQA-FGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH-TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHHh
Confidence 3454443332 567776554 56789999995 899999999999999887753
No 184
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=59.29 E-value=12 Score=23.04 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ |. .+ |...+.+++..|+++.+
T Consensus 15 ~glsq~~lA~~-~gis~~~i~~~e~------g~-------~~---~~~~l~~i~~~l~~~~~ 59 (71)
T 1zug_A 15 LKMTQTELATK-AGVKQQSIQLIEA------GV-------TK---RPRFLFEIAMALNCDPV 59 (71)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHT------TC-------CS---SCSTHHHHHHHTTSCHH
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHc------CC-------CC---ChHHHHHHHHHHCCCHH
Confidence 45789999995 8999988876543 21 11 12338999999999865
No 185
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=59.26 E-value=13 Score=24.89 Aligned_cols=28 Identities=18% Similarity=0.289 Sum_probs=21.4
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q 025983 166 RTVKEICSVANGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~l~~~l 194 (245)
.+.+|||.. +|++..++...+.+.++.|
T Consensus 54 ~s~~eIA~~-lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 54 WSTAQIATD-LGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHH
Confidence 478999995 9999998886665555444
No 186
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=59.26 E-value=9.3 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=25.8
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+-+.+..||++. ++++..++.+.++.|.+
T Consensus 34 ~~~~t~~ela~~-l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADI-FKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 567999999995 99999999999998864
No 187
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=58.85 E-value=5.5 Score=35.38 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=21.7
Q ss_pred CCCC--CCCCCceeeeCCCCceEccCCccccc
Q 025983 5 FCSD--CKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 5 ~Cp~--Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
.||. |++. +.+...|...|..||...+
T Consensus 310 aC~~~~C~kk---v~~~~~g~~~C~~C~~~~~ 338 (444)
T 4gop_C 310 ACASEGCNKK---VNLDHENNWRCEKCDRSYA 338 (444)
T ss_dssp ECCSTTCCCB---EEECTTSCEEETTTTEEES
T ss_pred cCCcccCCCc---cccCCCccEECCCCCCcCc
Confidence 5999 9973 4556789999999998764
No 188
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=58.65 E-value=24 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=26.1
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.+..++|.+.
T Consensus 179 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATL-SNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHH-TTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 57899999995 999999999999999763
No 189
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=58.46 E-value=27 Score=25.56 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 147 QDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 147 ~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
...-.-+.+|+|-+ .+ + +..+||+ ..+++...+.+.+..|.+
T Consensus 8 ~~yAl~~L~~La~~-~~-~-s~~~IA~-~~~i~~~~l~kIl~~L~~ 49 (145)
T 1xd7_A 8 LAVAIHILSLISMD-EK-T-SSEIIAD-SVNTNPVVVRRMISLLKK 49 (145)
T ss_dssp HHHHHHHHHHHHTC-SC-C-CHHHHHH-HHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CC-C-CHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 34455667777754 44 5 9999999 599999999999999976
No 190
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=58.14 E-value=23 Score=22.09 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ |.. . -+...+.+++..|+++.+
T Consensus 22 ~glsq~~lA~~-~gis~~~i~~~e~------g~~------~---~~~~~l~~la~~l~~~~~ 67 (77)
T 2b5a_A 22 KGVSQEELADL-AGLHRTYISEVER------GDR------N---ISLINIHKICAALDIPAS 67 (77)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TCS------C---CBHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHH-HCCCHHHHHHHHC------CCC------C---CCHHHHHHHHHHhCcCHH
Confidence 45789999995 8999988876543 211 1 135788899999999865
No 191
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=57.02 E-value=20 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=26.2
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.+..++|.+.
T Consensus 166 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALM-LGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 58999999995 999999999999999763
No 192
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=56.72 E-value=4.6 Score=29.35 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
..||.||+.+.+-.........|..||.-+.+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCC
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccC
Confidence 469999984333333344557799999877543
No 193
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=56.60 E-value=26 Score=21.79 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=32.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ |.. .| +.+.+.+++..|+++.+
T Consensus 17 ~gls~~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~ia~~l~~~~~ 62 (76)
T 1adr_A 17 LKIRQAALGKM-VGVSNVAISQWER------SET------EP---NGENLLALSKALQCSPD 62 (76)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------TSS------CC---CHHHHHHHHHHTTSCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCcCHH
Confidence 35689999995 8999988876533 211 11 34678899999999865
No 194
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=56.24 E-value=17 Score=27.48 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=25.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.|.|..+||+. +|++..++.+..++|.+
T Consensus 163 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 163 IKITRQEIGRI-VGCSREMVGRVLKSLEE 190 (207)
T ss_dssp EECCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 47899999995 99999999999999976
No 195
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=56.23 E-value=4.5 Score=21.96 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=10.5
Q ss_pred CCCceEccCCcccc
Q 025983 20 SAGDTVCSECGLVL 33 (245)
Q Consensus 20 ~~G~~vC~~CG~V~ 33 (245)
..|+.+|..||.+-
T Consensus 2 k~gDW~C~~C~~~N 15 (32)
T 2lk0_A 2 KFEDWLCNKCCLNN 15 (32)
T ss_dssp CCSEEECTTTCCEE
T ss_pred CCCCCCcCcCcCCc
Confidence 45888888887763
No 196
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=55.99 E-value=2.4 Score=31.01 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=14.0
Q ss_pred eCCCCceEccCCccccc
Q 025983 18 DHSAGDTVCSECGLVLE 34 (245)
Q Consensus 18 d~~~G~~vC~~CG~V~~ 34 (245)
+-.+|.++|.+||.+..
T Consensus 94 ~V~EG~L~Cp~cgr~yp 110 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIYP 110 (125)
T ss_dssp EEEEEEEEETTTCCEEE
T ss_pred EEEEEEEECCCCCCEee
Confidence 34579999999999873
No 197
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=55.79 E-value=20 Score=27.81 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHh--------CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 148 DALLAACLYIACRQ--------EDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 148 ~~iaAA~lY~acR~--------~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.-++...+.++-+. -..|.|..+||+. +|++..++.|.+++|.+.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~-lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMAR-TSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 34555555555442 2357899999995 999999999999999863
No 198
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=55.75 E-value=20 Score=27.85 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=32.9
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDF 212 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~ 212 (245)
..|.|..+||+. +|++..++.|..++|.+. |+.. ..-.+...|+..+
T Consensus 176 ~l~~t~~~iA~~-lg~sr~tvsR~l~~L~~~-gi~~-~~~~i~I~d~~~L 222 (237)
T 3fx3_A 176 TLPYDKMLIAGR-LGMKPESLSRAFSRLKAA-GVTV-KRNHAEIEDIALL 222 (237)
T ss_dssp ECCSCTHHHHHH-TTCCHHHHHHHHHHHGGG-TEEC-CTTEEEESCHHHH
T ss_pred EecCCHHHHHHH-hCCCHHHHHHHHHHHHHC-CeEe-eCCEEEEcCHHHH
Confidence 368889999995 999999999999998753 3421 1112444566444
No 199
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=55.64 E-value=22 Score=21.64 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=31.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ |.. .| +.. +.+++..|+++.+
T Consensus 13 ~glsq~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~-l~~la~~l~~~~~ 57 (69)
T 1r69_A 13 LGLNQAELAQK-VGTTQQSIEQLEN------GKT------KR---PRF-LPELASALGVSVD 57 (69)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHT------TSC------SS---CTT-HHHHHHHTTCCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---chH-HHHHHHHHCcCHH
Confidence 45789999995 8999988876533 211 12 223 8899999999865
No 200
>2bl8_A Enterocine A immunity protein; enterocin A, ORF2 protein, bacterial protein; HET: FLC; 1.6A {Enterococcus faecium} SCOP: a.29.8.2 PDB: 2bl7_A
Probab=55.63 E-value=40 Score=23.50 Aligned_cols=36 Identities=6% Similarity=0.177 Sum_probs=30.0
Q ss_pred CCHHhHHHHHh---------hhcCCCHHHHHHHHHHHHHhhhccc
Q 025983 207 IHAGDFMRRFC---------SNLGMNNQAVKAAQEAVQKSEEFDI 242 (245)
Q Consensus 207 ~~p~~~i~r~~---------~~L~l~~~v~~~A~~i~~~~~~~~~ 242 (245)
.+|+.++.|.+ ++|.|+++.+++..++-+..++.|+
T Consensus 45 ~~P~aliNrLVnYI~s~a~~~~l~ft~~qe~li~~L~~igk~agL 89 (103)
T 2bl8_A 45 LDPSPLINRLVNYLYFTAYTNKIRFTEYQEELIRNLSEIGRTAGI 89 (103)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCTTT
T ss_pred CChHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHhhcCc
Confidence 36888888855 6789999999999999999999887
No 201
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=55.54 E-value=3.1 Score=27.93 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=5.8
Q ss_pred CCCCCCCCCCC
Q 025983 1 MTDAFCSDCKK 11 (245)
Q Consensus 1 ~~~~~Cp~Cg~ 11 (245)
|....|..|+.
T Consensus 21 m~~rAC~~C~~ 31 (81)
T 3p8b_A 21 MSEKACRHCHY 31 (81)
T ss_dssp -CCEEETTTCB
T ss_pred hhHHHHhhCCC
Confidence 34445666664
No 202
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=55.49 E-value=6.1 Score=25.28 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=31.4
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCH--HhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHA--GDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p--~~~i~r~~~~L~l~~~ 225 (245)
...|++|||.. +||+..++.++++ - -+.+.+ ..-|.+.+.+||..+.
T Consensus 8 ~~~t~~diA~~-aGVS~sTVSr~ln-------~-------~~~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 8 TAATMKDVALK-AKVSTATVSRALM-------N-------PDKVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp -CCCHHHHHHH-TTCCHHHHHHTTT-------C-------CCCSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHc-------C-------CCCCCHHHHHHHHHHHHHhCCCcc
Confidence 35799999995 9999999987643 1 122333 3457777888887544
No 203
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=55.43 E-value=8.9 Score=24.92 Aligned_cols=29 Identities=21% Similarity=0.583 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccccccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~ 37 (245)
..+|-.||.- + ..+| +.|.+||.++=..-
T Consensus 35 pt~C~~C~~~---l--~~qG-~kC~~C~~~cHkkC 63 (72)
T 2fnf_X 35 PGWCDLCGRE---V--LRQA-LRCANCKFTCHSEC 63 (72)
T ss_dssp CCBCTTTSSB---C--SSCC-EECTTSSCEECTGG
T ss_pred CcchhhhhHH---H--HhCc-CccCCCCCeechhh
Confidence 3679999972 3 4555 67999999885443
No 204
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=55.42 E-value=28 Score=24.50 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 155 LYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 155 lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+++..+..+.|.++.++++. ++++..++.+.++.|.+.
T Consensus 40 L~~l~~~~~~~~~~~ela~~-l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 40 IDYLSRNKNKEVLQRDLESE-FSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHTTTSCCBHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCcCHHHHHHH-HCCCcchHHHHHHHHHHC
Confidence 33334444458999999995 999999999999999763
No 205
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=55.36 E-value=3 Score=31.04 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=17.1
Q ss_pred ceeeeCCCCceEccCCccccc
Q 025983 14 EVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 14 ~iv~d~~~G~~vC~~CG~V~~ 34 (245)
.+..+...+...|.+||...+
T Consensus 61 ~L~i~~~p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYEWK 81 (139)
T ss_dssp EEEEEEECCEEEETTTCCEEE
T ss_pred EEEEEecCCcEECCCCCCEEe
Confidence 566667788999999999875
No 206
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=55.31 E-value=33 Score=21.60 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=32.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ |.. .-....+.+++..|+++.+
T Consensus 14 ~glsq~~lA~~-~gis~~~i~~~e~------g~~---------~p~~~~l~~ia~~l~v~~~ 59 (77)
T 2k9q_A 14 LSLTAKSVAEE-MGISRQQLCNIEQ------SET---------APVVVKYIAFLRSKGVDLN 59 (77)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------CCS---------CCHHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHc------CCC---------CCCHHHHHHHHHHhCcCHH
Confidence 45789999994 8999988876532 211 1235778899999998754
No 207
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=54.94 E-value=22 Score=26.99 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.|..++|.+.
T Consensus 166 ~~~t~~~iA~~-lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQI-VGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999763
No 208
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=54.91 E-value=17 Score=25.86 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCC--CCCCC----HHHHHHHHHHHHHHhCCCCcCHHHHHHHHhC--CCHHHH
Q 025983 112 IATMSDRLGLVATIKDRANEIYKKVEDQKS--SRGRN----QDALLAACLYIACRQEDKPRTVKEICSVANG--ATKKEI 183 (245)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~--~~gr~----~~~iaAA~lY~acR~~~~~~tl~dia~~~~~--v~~~~i 183 (245)
+.++|..||++...+..-. +.....+. ..|+. +... ...+-+ . .+-..+..+|+.. ++ ++..+|
T Consensus 25 ~~~ia~~lgis~~Tv~r~~---~~~~~~g~~~~~gr~~~l~~~~~-~~i~~~-~--~~~~~s~~~i~~~-lg~~~s~~tV 96 (141)
T 1u78_A 25 LHEMSRKISRSRHCIRVYL---KDPVSYGTSKRAPRRKALSVRDE-RNVIRA-A--SNSCKTARDIRNE-LQLSASKRTI 96 (141)
T ss_dssp HHHHHHHHTCCHHHHHHHH---HSGGGTTCCCCCCCCCSSCHHHH-HHHHHH-H--HHCCCCHHHHHHH-TTCCSCHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH---HcccccCCcCCCCCCCcCCHHHH-HHHHHH-H--hCCCCCHHHHHHH-HCCCccHHHH
Confidence 6788999999987765533 33322221 23432 2222 222211 2 2234788999984 78 788999
Q ss_pred HHHHHH
Q 025983 184 GRAKEY 189 (245)
Q Consensus 184 ~~~~~~ 189 (245)
.+.++.
T Consensus 97 ~r~l~~ 102 (141)
T 1u78_A 97 LNVIKR 102 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
No 209
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=54.91 E-value=24 Score=22.54 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=33.4
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|+. +|++..+|.+..+ |.. .| +.+.+.++|..|+++.+
T Consensus 26 ~gltq~elA~~-~gis~~~is~~e~------g~~------~~---~~~~l~~l~~~l~~~~~ 71 (83)
T 3f6w_A 26 AGITQKELAAR-LGRPQSFVSKTEN------AER------RL---DVIEFMDFCRGIGTDPY 71 (83)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------TSS------CC---CHHHHHHHHHHHTCCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHC------CCC------CC---CHHHHHHHHHHcCCCHH
Confidence 45789999995 8999988776533 211 11 34688899999999865
No 210
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=54.90 E-value=1.5 Score=36.89 Aligned_cols=40 Identities=28% Similarity=0.623 Sum_probs=27.8
Q ss_pred CCCCCCCCCCceeeeC--CCCceEccCCcc--------cccccccccCccccccc
Q 025983 4 AFCSDCKKHTEVVFDH--SAGDTVCSECGL--------VLESHSIDETSEWRTFA 48 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~--~~G~~vC~~CG~--------V~~e~~id~~~ewr~f~ 48 (245)
.+||.|+. .+++. +....||..|+. ++ +.++|.++ |..|.
T Consensus 31 ~kc~~~~~---~~y~~~l~~~~~v~p~~~~~~r~~arerI-~~L~D~gs-F~El~ 80 (285)
T 2f9i_B 31 TKCPKCKK---IMYTKELAENLNVCFNCDHHIALTAYKRI-EAISDEGS-FTEFD 80 (285)
T ss_dssp EECTTTCC---EEEHHHHHHTTTBCTTTCCBCCCCHHHHH-HHTSCTTC-CEEES
T ss_pred HhhHhhCC---ccchhhhHHhcCcCCCCCCCCCCCHHHHH-HHHccCCC-cEEEC
Confidence 47999997 25553 566789999999 45 36677653 55554
No 211
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=54.78 E-value=19 Score=27.34 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.+..++|.+.
T Consensus 145 ~~~t~~~lA~~-lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAA-VGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 57899999995 999999999999999763
No 212
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=54.71 E-value=19 Score=23.77 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=26.3
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.-..++.|+|+. ++|++.+|++-+..|.+.
T Consensus 14 ~g~vsv~eLa~~-l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 14 RGRMEAAQISQT-LNTPQPMINAMLQQLESM 43 (78)
T ss_dssp SCSBCHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 457899999995 999999999999998764
No 213
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=54.59 E-value=18 Score=22.64 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=32.3
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|+. +|++..+|.+..+ |.. . .+.+.+.++|..|+++.+
T Consensus 20 ~glsq~~lA~~-~gis~~~is~~e~------g~~------~---~~~~~l~~ia~~l~v~~~ 65 (73)
T 3omt_A 20 KGKTNLWLTET-LDKNKTTVSKWCT------NDV------Q---PSLETLFDIAEALNVDVR 65 (73)
T ss_dssp HTCCHHHHHHH-TTCCHHHHHHHHT------TSS------C---CCHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCcCHH
Confidence 35689999995 8999998877643 211 1 134678889998888743
No 214
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=54.57 E-value=8.6 Score=24.98 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
+...|..|+.. |..-.-.--|..||.|+=..
T Consensus 10 ~~~~C~~C~~~----F~~~~RrHHCR~CG~v~C~~ 40 (73)
T 1vfy_A 10 DSDACMICSKK----FSLLNRKHHCRSCGGVFCQE 40 (73)
T ss_dssp CCSBCTTTCCB----CBTTBCCEECTTTCCEECGG
T ss_pred cCCcccCCCCc----cCCccccccCCCCCEEEccc
Confidence 34579999973 44445678888888888433
No 215
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=54.11 E-value=23 Score=22.24 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=33.3
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ |. .. ..+.+.+.+++..|+++.+
T Consensus 19 ~g~sq~~lA~~-~gis~~~i~~~e~------g~-------~~-~~~~~~l~~ia~~l~~~~~ 65 (78)
T 3b7h_A 19 QNLTINRVATL-AGLNQSTVNAMFE------GR-------SK-RPTITTIRKVCGTLGISVH 65 (78)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHC------TT-------CC-CCCHHHHHHHHHHHTCCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CC-------CC-CCCHHHHHHHHHHcCCCHH
Confidence 45789999995 8999988876543 11 10 1134678899999999865
No 216
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=53.89 E-value=24 Score=24.18 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=26.8
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.|.+.+..++|+ .+|++..+++++++.|..
T Consensus 30 ~g~~~s~~eLa~-~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 30 KGTEMTDEEIAN-QLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp HCSCBCHHHHHH-TTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 566789999999 599999999999999975
No 217
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=53.81 E-value=17 Score=28.06 Aligned_cols=30 Identities=7% Similarity=0.081 Sum_probs=26.8
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
..|.|..+||+. +|++..++.+..++|.+.
T Consensus 176 ~~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 176 EIPVAKQLVAGH-LSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCCSCTHHHHHH-TTSCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 467899999995 999999999999999864
No 218
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=53.41 E-value=22 Score=27.46 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=28.9
Q ss_pred HHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 158 ACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 158 acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
..+.++.|.|++|||+ .++++..++.+..+.|.+
T Consensus 17 ~~~~~g~~~s~~eia~-~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 17 FIEKNGYPPSVREIAR-RFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHHHHSSCCCHHHHHH-HHTSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHH-HcCCCcHHHHHHHHHHHH
Confidence 4456889999999999 599999999888888865
No 219
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=52.93 E-value=35 Score=22.63 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=42.8
Q ss_pred HhCCCCcCHHHHHHHHhCCCHHH-HHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 025983 160 RQEDKPRTVKEICSVANGATKKE-IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSE 238 (245)
Q Consensus 160 R~~~~~~tl~dia~~~~~v~~~~-i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~ 238 (245)
...+.+.++.||++. ++++..+ +.+..+.|.+. |+ +. .+|.+ +=...+.|.++=...+..+.+...
T Consensus 25 ~~~~~~~t~~eLa~~-l~is~~t~vs~~l~~Le~~-Gl-------v~-~~~~d---rR~~~~~LT~~G~~~~~~~~~~~~ 91 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKA-SGVSEKTFFMGLKDRLIRA-GL-------VK-EETLS---YRVKTLKLTEKGRRLAECLEKCRD 91 (95)
T ss_dssp HHTTCCCCHHHHHHH-HCCCHHHHHTTHHHHHHHT-TS-------EE-EEEEE---TTEEEEEECHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHH-HCCCchHHHHHHHHHHHHC-CC-------ee-cCCCC---CCeEEEEECHhHHHHHHHHHHHHH
Confidence 345558999999995 9999999 99999998764 32 11 12221 112345666666666665555544
Q ss_pred h
Q 025983 239 E 239 (245)
Q Consensus 239 ~ 239 (245)
.
T Consensus 92 ~ 92 (95)
T 2pg4_A 92 V 92 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 220
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.90 E-value=7.8 Score=23.06 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
|...+|-.||..-+-..=..--.+-|..||.=+
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 455677888863110000122346677777643
No 221
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=52.26 E-value=38 Score=22.28 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=34.1
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
..|..++|.. +|++..+|.+..+ |.. . . ..+.+.+++..|+++.+
T Consensus 21 gltq~~lA~~-~gis~~~is~~e~------g~~------~--~-~~~~~~~i~~~l~v~~~ 65 (94)
T 2ict_A 21 NVSLREFARA-MEIAPSTASRLLT------GKA------A--L-TPEMAIKLSVVIGSSPQ 65 (94)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHH------TSS------C--C-CHHHHHHHHHHTCSCHH
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHc------CCC------C--C-CHHHHHHHHHHHCcCHH
Confidence 4789999995 8999999887654 211 1 1 24688899999999987
No 222
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=52.12 E-value=9.6 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.623 Sum_probs=18.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
.+|-.||+ ++ ..+| +.|.+||.+.=.
T Consensus 23 t~C~~C~~---~i--~kqg-~kC~~C~~~cH~ 48 (59)
T 1rfh_A 23 GWCDLCGR---EV--LRQA-LRCANCKFTCHS 48 (59)
T ss_dssp EECTTTCS---EE--CSCC-EECTTTSCEECH
T ss_pred eEchhcch---hh--hhCc-cEeCCCCCeEeh
Confidence 57999986 23 4555 679999998743
No 223
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=51.89 E-value=29 Score=26.56 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=29.1
Q ss_pred HhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 025983 160 RQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 160 R~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
+..+.|.|..|+|+. +++|..+|.+-++.|.+ .|+
T Consensus 31 ~~~~~~~s~~eLa~~-l~vS~~Ti~rdi~~L~~-~G~ 65 (187)
T 1j5y_A 31 ERSKEPVSGAQLAEE-LSVSRQVIVQDIAYLRS-LGY 65 (187)
T ss_dssp HHCSSCBCHHHHHHH-HTSCHHHHHHHHHHHHH-HTC
T ss_pred HHcCCCcCHHHHHHH-HCcCHHHHHHHHHHHHH-CCC
Confidence 345668999999995 99999999999999976 454
No 224
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=51.75 E-value=54 Score=22.87 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=36.9
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCC---HHhHHHHHhhhcCCCHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIH---AGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~---p~~~i~r~~~~L~l~~~ 225 (245)
+.....|+.++|+. +|++...|.+.-+ |.. .+... ...++.+|+..|+++.+
T Consensus 16 R~~~glSq~eLA~~-~gis~~~is~iE~------G~~------~~~p~~~~~~~~l~~iA~~Lgv~~~ 70 (112)
T 2wus_R 16 REERRITLLDASLF-TNINPSKLKRIEE------GDL------KGLDAEVYIKSYIKRYSEFLELSPD 70 (112)
T ss_dssp HHTTTCCHHHHHHH-SSCCHHHHHHHHH------TCC------TTSSCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHcCCCHHHHHHH-HCcCHHHHHHHHC------CCC------CCCcchhHHHHHHHHHHHHhCcCHH
Confidence 45567899999994 9999999887643 211 11111 34689999999999854
No 225
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=51.48 E-value=39 Score=22.31 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=33.8
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
+.....|+.++|.. +|++..+|.+..+ |.. .| ....+.+++..|+++.+
T Consensus 18 r~~~glsq~~lA~~-~gis~~~is~~e~------G~~------~p---~~~~l~~ia~~l~v~~~ 66 (94)
T 2kpj_A 18 IAKSEKTQLEIAKS-IGVSPQTFNTWCK------GIA------IP---RMGKVQALADYFNINKS 66 (94)
T ss_dssp HTTSSSCHHHHHHH-HTCCHHHHHHHHT------TSC------CC---CHHHHHHHHHHHTCCTH
T ss_pred HHHcCCCHHHHHHH-HCcCHHHHHHHHh------CCC------CC---CHHHHHHHHHHHCcCHH
Confidence 34556899999995 8999988876533 211 11 24678888888888744
No 226
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=51.24 E-value=35 Score=21.73 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=34.1
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
....|+.++|.. +|++..+|.+..+ |.. .| +...+.+++..|+++.+
T Consensus 22 ~~glsq~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~ia~~l~v~~~ 68 (82)
T 3s8q_A 22 EKGMTQEDLAYK-SNLDRTYISGIER------NSR------NL---TIKSLELIMKGLEVSDV 68 (82)
T ss_dssp HTTCCHHHHHHH-HTCCHHHHHHHHT------TCC------CC---BHHHHHHHHHHTTCCHH
T ss_pred HcCCCHHHHHHH-hCcCHHHHHHHHC------CCC------CC---CHHHHHHHHHHHCcCHH
Confidence 345789999995 8999988876533 211 12 35788899999999864
No 227
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=51.17 E-value=25 Score=21.74 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=32.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|..++|.. +|++..+|.+..+ |.. .| +.+.+.+++..|+++.+
T Consensus 25 ~g~s~~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~l~~~l~~~~~ 70 (74)
T 1y7y_A 25 KGLSQETLAFL-SGLDRSYVGGVER------GQR------NV---SLVNILKLATALDIEPR 70 (74)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TCS------CC---BHHHHHHHHHHTTSCGG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHC------CCC------CC---CHHHHHHHHHHhCcCHH
Confidence 45789999995 8999988876532 211 11 34678899999998753
No 228
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=51.15 E-value=18 Score=23.18 Aligned_cols=47 Identities=6% Similarity=0.040 Sum_probs=32.8
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
....|+.++|+. +|++..+|.+..+ |.. .| +.+.+.+++..|+++.+
T Consensus 23 ~~gltq~~lA~~-~gvs~~~is~~e~------g~~------~~---~~~~~~~ia~~l~v~~~ 69 (80)
T 3kz3_A 23 ELGLSYESVADK-MGMGQSAVAALFN------GIN------AL---NAYNAALLAKILKVSVE 69 (80)
T ss_dssp HHTCCHHHHHHH-TTSCHHHHHHHHT------TSS------CC---CHHHHHHHHHHHTSCGG
T ss_pred HcCCCHHHHHHH-hCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHhCCCHH
Confidence 346789999995 9999988876533 211 11 23788889999988743
No 229
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=50.94 E-value=28 Score=21.30 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=32.6
Q ss_pred CCcCHHHHHHHHhC--CCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANG--ATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~--v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +| ++..+|.+..+ |.. .| +...+.+++..|+++.+
T Consensus 20 ~glsq~~lA~~-~g~~is~~~i~~~e~------g~~------~~---~~~~l~~la~~l~v~~~ 67 (71)
T 2ewt_A 20 QGLSLHGVEEK-SQGRWKAVVVGSYER------GDR------AV---TVQRLAELADFYGVPVQ 67 (71)
T ss_dssp TTCCHHHHHHH-TTTSSCHHHHHHHHH------TCS------CC---CHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-HCCcCCHHHHHHHHC------CCC------CC---CHHHHHHHHHHHCcCHH
Confidence 45789999995 89 99988877644 211 11 34678889999988743
No 230
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=50.67 E-value=4.7 Score=30.33 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=22.1
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|-+||+...--....-|-.+|.+|.-|-.
T Consensus 39 ~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR 69 (147)
T 3dwd_A 39 NVCFECGAFNPQWVSVTYGIWICLECSGRHR 69 (147)
T ss_dssp TBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CccCCCCCCCCCeEEecccEeEhHhhChHHh
Confidence 4699999842223455789999999988764
No 231
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=50.63 E-value=23 Score=22.12 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=32.3
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|+. +|++..+|.+..+ |.. .| +.+.+.+++..|+++.+
T Consensus 22 ~g~s~~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~ia~~l~~~~~ 67 (76)
T 3bs3_A 22 KQRTNRWLAEQ-MGKSENTISRWCS------NKS------QP---SLDMLVKVAELLNVDPR 67 (76)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TSS------CC---CHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCcCHH
Confidence 45789999995 8999988876543 211 11 34678899999988743
No 232
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=50.25 E-value=32 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.|.+++|.+.
T Consensus 216 l~lt~~~lA~~-lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQI-VGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999863
No 233
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=50.06 E-value=5 Score=24.96 Aligned_cols=22 Identities=32% Similarity=0.818 Sum_probs=14.5
Q ss_pred CCCCCCCCCceeeeCCCCceEccCCcc
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSECGL 31 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~CG~ 31 (245)
.|..||+ .+.- --..+|..||+
T Consensus 19 ~CrRCG~-~syH----~qK~~Ca~CGy 40 (57)
T 1vq8_1 19 KCRRCGE-KSYH----TKKKVCSSCGF 40 (57)
T ss_dssp ECTTTCS-EEEE----TTTTEETTTCT
T ss_pred cccccCC-hhhh----ccccccccccC
Confidence 4888887 3332 22678888887
No 234
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=55.55 E-value=3.4 Score=26.75 Aligned_cols=41 Identities=7% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Q 025983 154 CLYIACRQEDK-PRTVKEICSVANGATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 154 ~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~ 195 (245)
.|..+|++.|. |-|+..||.. ++=++..|...|++|++.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~-Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAK-LDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 46788998886 8899999985 79999999999999987664
No 235
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=49.93 E-value=32 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=22.7
Q ss_pred CCCCcCHHHHHHHHh-----CCCHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVAN-----GATKKEIGRAKEY 189 (245)
Q Consensus 162 ~~~~~tl~dia~~~~-----~v~~~~i~~~~~~ 189 (245)
.+.+.|..|+++. + +|+..+|.+.+++
T Consensus 16 ~~~~~t~~el~~~-l~~~~~~vs~~Tv~R~L~~ 47 (64)
T 2p5k_A 16 SNEIETQDELVDM-LKQDGYKVTQATVSRDIKE 47 (64)
T ss_dssp HSCCCSHHHHHHH-HHHTTCCCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHH-HHHhCCCcCHHHHHHHHHH
Confidence 3458999999995 8 9999999888773
No 236
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=49.85 E-value=34 Score=27.35 Aligned_cols=74 Identities=14% Similarity=0.278 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHh-----CCcc---CCcccc-CCCCHHhHHHHHhh
Q 025983 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL-----GLET---GQSVEM-GTIHAGDFMRRFCS 218 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l-----~~~~---~~~~~~-~~~~p~~~i~r~~~ 218 (245)
..++=|.||++ +.|+++.+++.+ ++++..++..+...|...+ +++. +..+.+ ...+-..||.++..
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~-l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~ 91 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAA-TEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLL 91 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHH-HTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 35666777764 789999999995 8999999999999998766 2221 111111 12234578888874
Q ss_pred ---hcCCCHHH
Q 025983 219 ---NLGMNNQA 226 (245)
Q Consensus 219 ---~L~l~~~v 226 (245)
.-.|+...
T Consensus 92 ~~~~~~Ls~aa 102 (219)
T 2z99_A 92 DGARTKLTRAA 102 (219)
T ss_dssp HHHSCCCCHHH
T ss_pred ccccCccCHHH
Confidence 24566544
No 237
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=49.54 E-value=5.1 Score=29.89 Aligned_cols=31 Identities=26% Similarity=0.601 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|-.||+...--....-|..+|.+|.-|..
T Consensus 26 ~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR 56 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFVCTSCSGSLR 56 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEECHHHHHHHT
T ss_pred CcCCCCCCCCCCceeeccCEEEchhccchhc
Confidence 4689999742223345779999999988764
No 238
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.48 E-value=6.2 Score=24.93 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=14.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~ 31 (245)
..|.-||+ .+.- --...|..||+
T Consensus 18 ~lCrRCG~-~syH----~qK~~Ca~CGy 40 (62)
T 3j21_e 18 IRCRRCGR-VSYN----VKKGYCAACGF 40 (62)
T ss_dssp CBCSSSCS-BCEE----TTTTEETTTCT
T ss_pred eeecccCc-chhc----cccccccccCC
Confidence 35888887 3332 23567888886
No 239
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=49.20 E-value=22 Score=24.78 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYI 190 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l 190 (245)
-+.|.+|||.. +|+|..+|.|.-+.|
T Consensus 57 ge~TQREIA~~-lGiS~stISRi~r~L 82 (101)
T 1jhg_A 57 GEMSQRELKNE-LGAGIATITRGSNSL 82 (101)
T ss_dssp CCSCHHHHHHH-HCCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHH-HCCChhhhhHHHHHH
Confidence 46999999995 999999999994444
No 240
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=49.02 E-value=4.7 Score=29.98 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=21.5
Q ss_pred CCCCCCCCCCcee-eeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVV-FDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv-~d~~~G~~vC~~CG~V~~ 34 (245)
..|-.||+. +.. ....-|..+|.+|.-|..
T Consensus 37 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR 67 (138)
T 2owa_A 37 RTCFDCESR-NPTWLSLSFAVFICLNCSSDHR 67 (138)
T ss_dssp GBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CcCCCCcCC-CCCeEEecCCEEEhHhhhHHHh
Confidence 468899974 333 345778899999988764
No 241
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=48.94 E-value=4.8 Score=29.79 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=21.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|-.||+...--....-|..+|.+|.-|..
T Consensus 28 ~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR 58 (134)
T 2iqj_A 28 KFCADCQSKGPRWASWNIGVFICIRCAGIHR 58 (134)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CcCCcCcCCCCCeEEecCCEEEhHhhhHHHh
Confidence 4688999742223345779999999988764
No 242
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=48.63 E-value=58 Score=21.78 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHH-HHHHHHHHHHhC-CCCcCHHHHHHHHhCC-CHHHHHHHHH
Q 025983 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDAL-LAACLYIACRQE-DKPRTVKEICSVANGA-TKKEIGRAKE 188 (245)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~i-aAA~lY~acR~~-~~~~tl~dia~~~~~v-~~~~i~~~~~ 188 (245)
+.++|..++++.....+ +|+... |.++... --.=+-.|+++. ....++.|||.. +|- +...+.+.|+
T Consensus 22 ~~~lA~~~~~S~~~l~r---~fk~~~------g~s~~~~~~~~Rl~~A~~lL~~~~~si~~iA~~-~Gf~~~s~F~r~Fk 91 (103)
T 3lsg_A 22 LSVLSEKLDLSSGYLSI---MFKKNF------GIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQ-VGFEDVNYFITKFK 91 (103)
T ss_dssp HHHHHHHTTCCHHHHHH---HHHHHH------SSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-TTCSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHHHH------CcCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-hCCCCHHHHHHHHH
Confidence 78899999999755443 666654 3333222 222222233322 235789999984 776 5677777766
Q ss_pred HH
Q 025983 189 YI 190 (245)
Q Consensus 189 ~l 190 (245)
+.
T Consensus 92 ~~ 93 (103)
T 3lsg_A 92 KY 93 (103)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 243
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.48 E-value=20 Score=19.98 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=19.5
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKEY 189 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~ 189 (245)
.+..+||.. ++++..+|.+.++.
T Consensus 22 ~s~~~IA~~-lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 22 VSLHEMSRK-ISRSRHCIRVYLKD 44 (51)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHC
T ss_pred CCHHHHHHH-HCcCHHHHHHHHhh
Confidence 579999995 99999999887654
No 244
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=48.23 E-value=27 Score=26.89 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.|.|..+||+. +|++..++.|..++|.+
T Consensus 186 ~~lt~~~lA~~-lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 186 LRVSRQELARL-VGCSREMAGRVLKKLQA 213 (230)
T ss_dssp EECCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-hCCcHHHHHHHHHHHHH
Confidence 46899999995 99999999999999986
No 245
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=48.14 E-value=36 Score=21.69 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=33.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ +.. ..-..+.+.++|..|+++.+
T Consensus 22 ~gltq~elA~~-~gis~~~is~~E~------G~~--------~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 22 KGYSLSELAEK-AGVAKSYLSSIER------NLQ--------TNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TSC--------CCCBHHHHHHHHHHHTCCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC--------CCCCHHHHHHHHHHHCcCHH
Confidence 45789999995 8999988876543 201 01134788999999999854
No 246
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=47.84 E-value=12 Score=29.27 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=19.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
..||.||. ..+.-.+.. -..|..||+..
T Consensus 114 ~~Cp~Cg~-g~fma~h~d-R~~CGkC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGP-GIFMAKHYD-RHYCGKCHLTL 141 (189)
T ss_dssp EECSTTCS-SCEEEECSS-CEEETTTCCCB
T ss_pred ccCCccCC-CccccCccC-CCccCCceeEE
Confidence 35999996 444444433 56999999886
No 247
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=47.82 E-value=39 Score=22.87 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=33.4
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|+. +|++..+|.+..+ |.. .| +...+.+++..|+++.+
T Consensus 40 ~gltq~elA~~-~gis~~~is~iE~------G~~------~p---s~~~l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 40 KGMTQEDLAYK-SNLDRTYISGIER------NSR------NL---TIKSLELIMKGLEVSDV 85 (99)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TCS------CC---BHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHC------CCC------CC---CHHHHHHHHHHHCcCHH
Confidence 45689999994 8999988876643 211 11 35788899999999854
No 248
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=47.67 E-value=4 Score=30.61 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|-+||+...--....-|..+|.+|.-|-.
T Consensus 38 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR 68 (144)
T 2p57_A 38 KACFDCGAKNPSWASITYGVFLCIDCSGVHR 68 (144)
T ss_dssp GBCTTTCCBSCCEEEGGGTEEECHHHHHHHH
T ss_pred CcCCCCcCCCCCeEEeccCEEEhhhchHHHc
Confidence 4688899742222345678889999887763
No 249
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=47.67 E-value=20 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.+..++|.+.
T Consensus 176 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQL-VGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 46899999995 999999999999999763
No 250
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=47.66 E-value=7.6 Score=32.90 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.9
Q ss_pred CCCCceEccCCcccc--cccccccCcccccccC
Q 025983 19 HSAGDTVCSECGLVL--ESHSIDETSEWRTFAN 49 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~--~e~~id~~~ewr~f~~ 49 (245)
.+.|.++|..||.-| .+.-+|+|.-|.+|.+
T Consensus 205 ~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~ 237 (313)
T 3e0m_A 205 FEEGIYVDITTGEPLFFAKDKFASGCGWPSFSR 237 (313)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESS
T ss_pred CCCeEEEecCCCccccCCCccccCCCCCcccCc
Confidence 468999999999988 5567899999999985
No 251
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=47.50 E-value=21 Score=28.43 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=29.6
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
...|.+|||.. +++++.++....+.+.+.|+..
T Consensus 189 ~G~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 221 (237)
T 3szt_A 189 VGKTYGEIGLI-LSIDQRTVKFHIVNAMRKLNSS 221 (237)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHH-HCCCHHHHHHHHHHHHHHhCCC
Confidence 45789999996 9999999999999999999875
No 252
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.48 E-value=36 Score=21.90 Aligned_cols=28 Identities=4% Similarity=-0.060 Sum_probs=25.0
Q ss_pred CCcCHHHHHHHHh-----CCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVAN-----GATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~-----~v~~~~i~~~~~~l~~ 192 (245)
.|.+..||++. + +++..+|.+..+.|.+
T Consensus 32 ~~~s~~el~~~-l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 32 HHVSAEDLYKR-LIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SSBCHHHHHHH-HHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HHHhCCCCCHhhHHHHHHHHHH
Confidence 68999999995 8 8999999999998865
No 253
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=47.47 E-value=63 Score=21.87 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 025983 102 DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYI 157 (245)
Q Consensus 102 e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~ 157 (245)
+..+.++...++++.+.-.+|.++...|.+....+.+.+ .++..=||.+|++
T Consensus 9 e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~----~~~~vRAA~aIs~ 60 (89)
T 2qsb_A 9 QNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQEN----ESLDLRCATVLSM 60 (89)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTT----SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC----cchhHHHHHHHHH
Confidence 567788888999999999999999999999888876543 5677778888876
No 254
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=47.43 E-value=11 Score=28.74 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=18.1
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
..||.|++ .++++. |.++|+ |.+
T Consensus 79 ~~CP~C~G--~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 79 LPCEECSG--QLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCCTTTCC--CEEEET--TEEEEC--CEE
T ss_pred CCCCCCCC--EEEEeC--CeEEEC--CCC
Confidence 47999994 688874 999998 555
No 255
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=46.99 E-value=10 Score=26.84 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=17.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
..|..|++. .+..+|-.||.|-=.
T Consensus 25 ~~C~~C~~~--------~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 25 QPCGDCGTI--------QENWVCLSCYQVYCG 48 (109)
T ss_dssp CCCTTTCCC--------SSEEEETTTCCEEEC
T ss_pred CcCccccCC--------CCeeeeeecCccccC
Confidence 458888873 235789999999743
No 256
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=46.92 E-value=7.7 Score=21.15 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=9.7
Q ss_pred CCCceEccCCccc
Q 025983 20 SAGDTVCSECGLV 32 (245)
Q Consensus 20 ~~G~~vC~~CG~V 32 (245)
..|+.+|..||.+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 3578888888766
No 257
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=46.29 E-value=21 Score=27.57 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.+..++|.+.
T Consensus 162 ~~~t~~~lA~~-lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANL-IGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHH-HCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999763
No 258
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=46.08 E-value=31 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=24.5
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|..|||.. +|+++.++++.+..|.+.
T Consensus 31 ~sa~eLAk~-LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 31 ATAAQLTRQ-LNMEKREVNKALYDLQRS 57 (82)
T ss_dssp EEHHHHHHH-SSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 999999995 999999999999998764
No 259
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=45.68 E-value=33 Score=21.78 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=30.7
Q ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcC--CCHH
Q 025983 167 TVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLG--MNNQ 225 (245)
Q Consensus 167 tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~--l~~~ 225 (245)
|..++|+. +||+..+|.+..+- .. .|.+.+.+++..|+ ++.+
T Consensus 13 sq~~lA~~-lgvs~~~is~~e~g------~~----------~p~~~l~~ia~~l~~~v~~~ 56 (79)
T 3bd1_A 13 SVSALAAS-LGVRQSAISNWRAR------GR----------VPAERCIDIERVTNGAVICR 56 (79)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHH------TC----------CCGGGHHHHHHHTTTSSCHH
T ss_pred CHHHHHHH-HCCCHHHHHHHHHC------CC----------CCHHHHHHHHHHHCCCCcHH
Confidence 89999995 99999999876541 10 12467888888888 6643
No 260
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.66 E-value=5.4 Score=29.75 Aligned_cols=31 Identities=19% Similarity=0.539 Sum_probs=21.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|-.||+...--....-|..+|.+|.-|..
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR 60 (141)
T 2crr_A 30 KYCADCEAKGPRWASWNIGVFICIRCAGIHR 60 (141)
T ss_dssp SSCSSSCCSSCCSEETTTTEECCHHHHHHHH
T ss_pred CcCCCCCCCCCCeEEeccCeEEhhhhhHhHh
Confidence 4688999742223345778899999988764
No 261
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=45.58 E-value=31 Score=27.23 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
...|.+|||.. +++++.++....+.+.+.|+..
T Consensus 187 ~g~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 187 VGKTMEEIADV-EGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 46789999996 9999999999999999999975
No 262
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=45.53 E-value=51 Score=23.55 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=32.3
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCC---HHhHHHHHhhhcCCCHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIH---AGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~---p~~~i~r~~~~L~l~~~ 225 (245)
.....|+.|+|+. +|++...|.+.-+ |.. .|..+ ...++.++++.||++.+
T Consensus 13 ~~~gltq~elA~~-~gis~~~is~iE~------g~~------~~~~~~~~~~~~l~~ia~~L~v~~~ 66 (130)
T 3fym_A 13 ERLGMTLTELEQR-TGIKREMLVHIEN------NEF------DQLPNKNYSEGFIRKYASVVNIEPN 66 (130)
T ss_dssp HHTTCCHHHHHHH-HCCCHHHHHHHHT------TCG------GGSSSGGGHHHHHHHHHHHTTCCHH
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHC------CCC------CCCchhhhHHHHHHHHHHHhCCCHH
Confidence 4456889999994 8999888876533 211 11111 12577788888887754
No 263
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=45.52 E-value=20 Score=27.39 Aligned_cols=29 Identities=10% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.|.|..+||+. +|++..++.|..++|.+.
T Consensus 162 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAAL-AGTSRETVSRVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 57899999995 999999999999999863
No 264
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=44.95 E-value=57 Score=21.71 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=34.9
Q ss_pred hCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhc-CCC-HHHHHHHHHHHHHhhh
Q 025983 176 NGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL-GMN-NQAVKAAQEAVQKSEE 239 (245)
Q Consensus 176 ~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L-~l~-~~v~~~A~~i~~~~~~ 239 (245)
.+|.+.+|+++++ + .+....+++.+|=.++ +++ ++.++.-..|+++...
T Consensus 17 ~~iTEe~VRryL~--r-------------kPmTT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki~p 67 (82)
T 1nha_A 17 VQVTEDAVRRYLT--R-------------KPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNP 67 (82)
T ss_dssp CCCCHHHHHHHHH--H-------------SCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHH--h-------------CCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCH
Confidence 5889999888766 1 2345789999999887 554 5566666677776543
No 265
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=44.26 E-value=11 Score=22.62 Aligned_cols=24 Identities=29% Similarity=0.754 Sum_probs=18.4
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|..|++. ++ .| +.|.+|+...=
T Consensus 15 t~C~~C~k~---i~---~G-~kC~~Ck~~cH 38 (49)
T 1kbe_A 15 QVCNVCQKS---MI---FG-VKCKHCRLKCH 38 (49)
T ss_dssp CCCSSSCCS---SC---CE-EEETTTTEEES
T ss_pred cCccccCce---eE---Cc-CCCCCCCCccc
Confidence 679999972 34 56 78999998763
No 266
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=44.26 E-value=4.2 Score=30.38 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=15.4
Q ss_pred eeeCCCCceEccCCccccc
Q 025983 16 VFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 16 v~d~~~G~~vC~~CG~V~~ 34 (245)
.+|..+|.++|..||....
T Consensus 102 e~~v~eg~L~C~~cg~~YP 120 (141)
T 2j6a_A 102 QTSIAEGEMKCRNCGHIYY 120 (141)
T ss_dssp TEEEEEEEEECTTTCCEEE
T ss_pred heeccCCEEECCCCCCccc
Confidence 3456789999999999863
No 267
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=44.20 E-value=36 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+-|.++.||++. ++++..++.+..+.|.+
T Consensus 39 ~~~~t~~ela~~-l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 39 DKPLTISDIMEE-LKISKGNVSMSLKKLEE 67 (152)
T ss_dssp SSCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 468999999995 99999999999999875
No 268
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=43.89 E-value=78 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=25.7
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+.++.|+++. ++++..++.+.++.|.+.
T Consensus 52 ~~t~~ela~~-l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRL-TAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 8999999995 999999999999999864
No 269
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=43.79 E-value=43 Score=23.53 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=26.2
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+.+.++.|+|+. ++++..++.+..+.|.+
T Consensus 45 ~~~~t~~ela~~-l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 45 QDGLTQNDIAKA-LQRTGPTVSNLLRNLER 73 (139)
T ss_dssp TTCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHH-hCCCcccHHHHHHHHHH
Confidence 368999999995 99999999999999976
No 270
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=43.75 E-value=82 Score=22.14 Aligned_cols=31 Identities=3% Similarity=-0.008 Sum_probs=27.6
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.+.+.++.|+|+. ++++..++.+.++.|.+.
T Consensus 28 ~~~~~s~~ela~~-l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKD-LKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHH-hCCChHHHHHHHHHHHHC
Confidence 5678999999995 999999999999999764
No 271
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=43.73 E-value=55 Score=22.55 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=27.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
-+.++.|+++. ++++..++.+.++.|.+ .|+
T Consensus 44 ~~~s~~ela~~-l~is~stvsr~l~~Le~-~Gl 74 (119)
T 2lkp_A 44 GPLPVTDLAEA-IGMEQSAVSHQLRVLRN-LGL 74 (119)
T ss_dssp CCCCHHHHHHH-HSSCHHHHHHHHHHHHH-HCS
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH-CCC
Confidence 37899999995 99999999999999988 776
No 272
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.71 E-value=39 Score=25.10 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=27.7
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+.+-+.+..++|+. +|++..++.+.+++|.+.
T Consensus 13 ~~~~~~s~~~la~~-lg~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 13 QEDSTLAVADLAKK-VGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp TTCSCSCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 45668899999995 999999999999999763
No 273
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=43.43 E-value=55 Score=20.91 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=31.5
Q ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 167 TVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 167 tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
++.++|.. +|++..+|.+..+ |. .+.. ....+.+++..|+++.+
T Consensus 29 sq~~lA~~-~gis~~~is~~E~------g~-------~~~p-~~~~l~~ia~~l~v~~~ 72 (86)
T 2ofy_A 29 SMVTVAFD-AGISVETLRKIET------GR-------IATP-AFFTIAAVARVLDLSLD 72 (86)
T ss_dssp CHHHHHHH-HTCCHHHHHHHHT------TC-------CSSC-BHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHH-hCCCHHHHHHHHc------CC-------CCCC-CHHHHHHHHHHhCCCHH
Confidence 89999994 8999988876543 21 1111 24678899999999854
No 274
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=43.37 E-value=9.9 Score=23.20 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=14.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG 30 (245)
..||.|+....++. ..|..|+
T Consensus 10 ~~C~~C~GsG~~i~------~~C~~C~ 30 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------EPCPKCL 30 (53)
T ss_dssp EECTTTTTSCEETT------EECTTTT
T ss_pred ccCcCCcccccCCC------CcCCCCC
Confidence 46999987555542 5677774
No 275
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.92 E-value=6.9 Score=29.48 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=20.6
Q ss_pred CCCCCCCCCCce-eeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEV-VFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~i-v~d~~~G~~vC~~CG~V~~ 34 (245)
..|-.||.. +. -....-|..+|.+|.-|..
T Consensus 30 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR 60 (149)
T 2crw_A 30 KVCFDCGAK-NPSWASITYGVFLCIDCSGSHR 60 (149)
T ss_dssp SBCSSSCCB-SCCCEETTTTEECCHHHHHHHH
T ss_pred CcCCCCcCC-CCCcEEeccCEEEchhcchhhc
Confidence 468888873 33 2345678888888887763
No 276
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=42.83 E-value=9.3 Score=28.47 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=16.1
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
++|+.||. +.+=+ ..+|..||.-
T Consensus 48 ~rC~~CG~---~~~PP---r~~Cp~C~s~ 70 (145)
T 3irb_A 48 SKCSKCGR---IFVPA---RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESC---CSEETTTTEE
T ss_pred EEeCCCCc---EEcCc---hhhCcCCCCC
Confidence 57999997 24433 4689999863
No 277
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=42.81 E-value=29 Score=27.46 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
...+.+|||.. +++++.++....+.+.+.|+..
T Consensus 189 ~g~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 189 KGKTASVTANL-TGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp TTCCHHHHHHH-HCCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 45689999996 9999999999999999999975
No 278
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=42.73 E-value=39 Score=24.55 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=26.9
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.+-+.+..|+|+. +|++..++.+.+++|.+.
T Consensus 20 ~~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 20 ENSRLTYRELADI-LNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HCTTCCHHHHHHH-TTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 3467999999995 999999999999999753
No 279
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=42.62 E-value=53 Score=22.54 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=34.3
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
.....|+.++|+. +|++..+|.+..+ |-. + . +.+.+.+++..|+.+.+
T Consensus 24 ~~~gltq~eLA~~-lGis~~~is~ie~------G~~-------~-~-s~~~~~kla~~lgvs~~ 71 (104)
T 3trb_A 24 FLDKMSANQLAKH-LAIPTNRVTAILN------GAR-------S-I-TADTALRLAKFFGTTPE 71 (104)
T ss_dssp HTTSCCHHHHHHH-HTSCHHHHHHHHT------TSS-------C-C-CHHHHHHHHHHHTCCHH
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHc------CCC-------C-C-CHHHHHHHHHHHCcCHH
Confidence 4566899999995 9999998877643 211 1 1 24678889999998854
No 280
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.61 E-value=11 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccC--Ccccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSE--CGLVL 33 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~--CG~V~ 33 (245)
.+.||.|+.. |..+.-=..+.|.. ||.-.
T Consensus 6 ~k~CP~C~~~--Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 6 TKECPKCHVT--IEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCCTTTCCC--CSSCCSCCSSSCCSSGGGSCC
T ss_pred ceECcCCCCe--eEeCCCCCcEEECCCCcCCEE
Confidence 3689999973 55555555688887 87654
No 281
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.44 E-value=29 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l 194 (245)
...+.+|||.. +|++..++.+.+.+.++.|
T Consensus 123 ~g~s~~EIA~~-lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 123 RGYSYREIATI-LSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 45689999995 9999999887666555444
No 282
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=42.36 E-value=27 Score=24.39 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=25.0
Q ss_pred CCCc-CHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPR-TVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~-tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
|..+ +..++|+. ++|+..+++++++.|..
T Consensus 30 G~~lPs~~~La~~-~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTE-YQINPLTVSKAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3445 89999995 99999999999999975
No 283
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=42.25 E-value=21 Score=24.10 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=25.8
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.-..++.|+|+. ++|+..+|++-+..|.+.
T Consensus 14 ~g~vsv~eLA~~-l~VS~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 14 QGRMEAKQLSAR-LQTPQPLIDAMLERMEAM 43 (87)
T ss_dssp SCSEEHHHHHHH-TTCCHHHHHHHHHHHHTT
T ss_pred cCCCcHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 457899999995 999999999999988653
No 284
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=42.04 E-value=16 Score=32.06 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=22.6
Q ss_pred CCCCCCCC-CceeeeCCCCceEccCCcc
Q 025983 5 FCSDCKKH-TEVVFDHSAGDTVCSECGL 31 (245)
Q Consensus 5 ~Cp~Cg~~-~~iv~d~~~G~~vC~~CG~ 31 (245)
.||-|+.. +++.+++..|...|-.||.
T Consensus 36 ~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 59999853 4678889999999999993
No 285
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=41.96 E-value=89 Score=22.02 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=27.0
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.++ +.++.|+++. ++++..++.+..+.|.+.
T Consensus 51 ~~~-~~t~~ela~~-l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDI-LGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 344 9999999995 999999999999999864
No 286
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.75 E-value=16 Score=24.20 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=20.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 20 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKE----FSISRRKHHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCB----CBTTBCCEECTTTCCEECSG
T ss_pred CcccCcCCc----ccCccccccCCCCCCEEChH
Confidence 469999973 44445567888888888544
No 287
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=41.72 E-value=19 Score=24.99 Aligned_cols=35 Identities=23% Similarity=0.613 Sum_probs=22.7
Q ss_pred CCCCCCCCCCceeee-----CCCCc------eEccCCccccccccc
Q 025983 4 AFCSDCKKHTEVVFD-----HSAGD------TVCSECGLVLESHSI 38 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d-----~~~G~------~vC~~CG~V~~e~~i 38 (245)
..|..|+...-+..+ .+.|+ -+|.+|+.||.++-.
T Consensus 27 ~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~HvIA~HeY 72 (106)
T 2jox_A 27 TGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEY 72 (106)
T ss_dssp CCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCEEEEEEE
T ss_pred hhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceEeeeeeE
Confidence 469999984322221 23343 589999999987643
No 288
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=41.39 E-value=26 Score=25.28 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=24.8
Q ss_pred CCCc-CHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPR-TVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~-tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
|..+ +.+++|+. ++||..+++++|+.|..
T Consensus 35 G~~LPser~La~~-~gVSr~tVReAl~~L~~ 64 (134)
T 4ham_A 35 GEKILSIREFASR-IGVNPNTVSKAYQELER 64 (134)
T ss_dssp TCEECCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 4555 68899995 99999999999999975
No 289
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=41.28 E-value=51 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 025983 150 LLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 190 (245)
Q Consensus 150 iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l 190 (245)
+..+.-|+--.. ..+.++.++|+. +++|...+.+.+++.
T Consensus 5 ~~~~~~~i~~~~-~~~~~~~~la~~-~~~s~~~l~r~f~~~ 43 (292)
T 1d5y_A 5 IRDLLIWLEGHL-DQPLSLDNVAAK-AGYSKWHLQRMFKDV 43 (292)
T ss_dssp HHHHHHHHHTTS-SSSCCCHHHHTT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 344555554433 678999999994 899999999887754
No 290
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=40.80 E-value=54 Score=22.01 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=33.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ |-. .| +.+.+.+++..|+++.+
T Consensus 30 ~gltq~~lA~~-~gis~~~is~~e~------g~~------~~---~~~~l~~l~~~l~v~~~ 75 (104)
T 3cec_A 30 LDINTANFAEI-LGVSNQTIQEVIN------GQR------SI---TVDIAIRLGKALGNGPR 75 (104)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------TSS------CC---CHHHHHHHHHHHTSCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCc------CC---CHHHHHHHHHHHCcCHH
Confidence 35789999995 8999998877643 211 11 24678889999999865
No 291
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=40.48 E-value=86 Score=21.42 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH
Q 025983 101 PDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIAC 159 (245)
Q Consensus 101 ~e~~l~~~~~~I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~lY~ac 159 (245)
.+..+.++...++++.+.-.+|.++...|.+....+.+.+ ..+..=||.+|++-=
T Consensus 12 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~----~~~~vRAAtAIs~LD 66 (94)
T 2qzg_A 12 PADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEE----QELIVRSATAIQYLD 66 (94)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTT----SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC----cchhHHHHHHHHHHH
Confidence 4667888988999999999999999999999888876543 567777888888643
No 292
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=40.30 E-value=42 Score=24.25 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=26.3
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.+-+.+..|+|+ .+|++..++.+.+++|.+
T Consensus 16 ~~~~~s~~ela~-~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 16 KDSRLSMRELGR-KIKLSPPSVTERVRQLES 45 (144)
T ss_dssp HCSCCCHHHHHH-HHTCCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 346799999999 499999999999999975
No 293
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=40.28 E-value=7.8 Score=29.60 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|-.||+...--....-|..+|.+|.-|..
T Consensus 23 ~~CaDCga~~P~WaS~nlGvflCi~CSGiHR 53 (163)
T 3sub_A 23 NKCFDCGISNPDWVSVNHGIFLCINCSGVHR 53 (163)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CccccCCCCCCCeEEecCCeeEHHhhhHHhc
Confidence 4688899742223345678899999987764
No 294
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.27 E-value=83 Score=21.17 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=47.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHH-HHHHHHHHHHhCCC-C--cCHHHHHHHHhCC-CHHHHHHH
Q 025983 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDAL-LAACLYIACRQEDK-P--RTVKEICSVANGA-TKKEIGRA 186 (245)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~i-aAA~lY~acR~~~~-~--~tl~dia~~~~~v-~~~~i~~~ 186 (245)
+.++|..++++.....+ +|+... |.++..+ --.=+-.|+++... + .++.|||.. +|- +...+.+.
T Consensus 21 ~~~lA~~~~~s~~~l~r---~fk~~~------G~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~-~Gf~~~s~F~r~ 90 (108)
T 3mn2_A 21 IEKLTALTGISSRGIFK---AFQRSR------GYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALS-CGFSNLGHFARD 90 (108)
T ss_dssp HHHHHHHHTCCHHHHHH---HHHHHT------SSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHH-TTCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH---HHHHHh------CcCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH-hCCCCHHHHHHH
Confidence 77888999998654443 666653 4444333 22223334443322 2 699999994 776 46677777
Q ss_pred HHHHHHHhCCccCCccccCCCCHHhHHHH
Q 025983 187 KEYIVKQLGLETGQSVEMGTIHAGDFMRR 215 (245)
Q Consensus 187 ~~~l~~~l~~~~~~~~~~~~~~p~~~i~r 215 (245)
|+ +..|+ .|..|-.+
T Consensus 91 Fk---~~~G~-----------tP~~yr~~ 105 (108)
T 3mn2_A 91 YR---DMFGE-----------KPSETLQR 105 (108)
T ss_dssp HH---HHHSS-----------CHHHHHHH
T ss_pred HH---HHHCc-----------ChHHHHHh
Confidence 66 55554 47777554
No 295
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=40.26 E-value=44 Score=21.96 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~ 195 (245)
.+-|.+..||++. ++++..++.+..+.|.+ .|
T Consensus 35 ~~~~~s~~ela~~-l~is~~tvs~~l~~L~~-~g 66 (99)
T 3cuo_A 35 GSPGTSAGELTRI-TGLSASATSQHLARMRD-EG 66 (99)
T ss_dssp TCCSEEHHHHHHH-HCCCHHHHHHHHHHHHH-TT
T ss_pred hCCCcCHHHHHHH-HCcCHHHHHHHHHHHHH-CC
Confidence 4568999999995 99999999999999864 44
No 296
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=40.24 E-value=37 Score=22.08 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=32.7
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|.. +|++..+|.+..+ |.. .| +...+.+++..|+++.+
T Consensus 29 ~glsq~~lA~~-~gis~~~is~~e~------g~~------~~---~~~~l~~ia~~l~v~~~ 74 (92)
T 1lmb_3 29 LGLSQESVADK-MGMGQSGVGALFN------GIN------AL---NAYNAALLAKILKVSVE 74 (92)
T ss_dssp HTCCHHHHHHH-HTSCHHHHHHHHT------TSS------CC---CHHHHHHHHHHHTSCGG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCCCHH
Confidence 45789999995 8999988877643 211 11 24678899999988743
No 297
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=40.22 E-value=62 Score=23.40 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=46.9
Q ss_pred CCHHHHHHHH---------HHHHHHhCCC---C--cCHHHHHHHHhCCCHHHHHHH--HHHHHHHhCCccCCccccCCCC
Q 025983 145 RNQDALLAAC---------LYIACRQEDK---P--RTVKEICSVANGATKKEIGRA--KEYIVKQLGLETGQSVEMGTIH 208 (245)
Q Consensus 145 r~~~~iaAA~---------lY~acR~~~~---~--~tl~dia~~~~~v~~~~i~~~--~~~l~~~l~~~~~~~~~~~~~~ 208 (245)
.+...+|.++ -|+.--.+|. | -++..||+ +++|+...+-.- ...+...+.+... +-...
T Consensus 27 ~T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~-~f~V~~~yl~~~~~~~~~~~el~ll~~----~rd~~ 101 (135)
T 3r1f_A 27 HTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALAN-FFRIKAAYFTDDEYYEKLDKELQWLCT----MRDDG 101 (135)
T ss_dssp CCHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHH-HHTSCTHHHHCHHHHHHHHHHHHHHHH----TTSTT
T ss_pred CCHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHH-HhCCCHHHHcCCcchhhHHHHHHHHHH----Hhhhh
Confidence 3556666655 3666555543 3 35788999 489996655421 1111111110000 01112
Q ss_pred HHhHHHHHhhhcCCCHHHHHHHHHHHHHhhhc
Q 025983 209 AGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240 (245)
Q Consensus 209 p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~ 240 (245)
...+..|+ .+|+++..+....+++.+++.
T Consensus 102 v~~l~~r~---~~Ls~e~~~~l~~ii~~l~~~ 130 (135)
T 3r1f_A 102 VRRIAQRA---HGLPSAAQQKVLDRIDELRRA 130 (135)
T ss_dssp HHHHHHHH---TSCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHH---cCCCHHHHHHHHHHHHHHHHh
Confidence 23444444 479999999999999888763
No 298
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=40.06 E-value=37 Score=23.75 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=21.8
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l 194 (245)
..+..|||+. +|++..++.....+..+.|
T Consensus 41 g~s~~EIA~~-lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 41 DYSLSEIADT-FNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp CCCHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHH
Confidence 4689999995 9999988876655555444
No 299
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=40.05 E-value=50 Score=21.88 Aligned_cols=28 Identities=11% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
-|.+..||++. ++++..++.+..+.|.+
T Consensus 35 ~~~~~~ela~~-l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAK-LQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 58999999995 89999999999998865
No 300
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=39.82 E-value=49 Score=25.75 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=24.9
Q ss_pred CcCHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATK-KEIGRAKEYIVK 192 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~-~~i~~~~~~l~~ 192 (245)
|.|..+||+. +|++. .++.|..++|.+
T Consensus 169 ~~t~~~lA~~-lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYS-SGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHH-TTCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-hCCChHHHHHHHHHHHHH
Confidence 7899999995 99999 799999999976
No 301
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=39.67 E-value=47 Score=23.67 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=26.1
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+-+.+..|+|+. +|++..++.+.++.|.+.
T Consensus 16 ~~~~~~~ela~~-lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 16 DARTPFTEIAKK-LGISETAVRKRVKALEEK 45 (141)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 456899999995 899999999999999753
No 302
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=39.54 E-value=52 Score=22.16 Aligned_cols=75 Identities=9% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHH------------HHHHHHhCCccCCccc------cCCCCHHhHHHHHhhhc--CCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAK------------EYIVKQLGLETGQSVE------MGTIHAGDFMRRFCSNL--GMN 223 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~------------~~l~~~l~~~~~~~~~------~~~~~p~~~i~r~~~~L--~l~ 223 (245)
...|+.++|.. +|++..+|.+.. ..|.+.|++...--+. .+...+......+...+ +|+
T Consensus 13 ~gltq~~lA~~-~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 91 (111)
T 1b0n_A 13 KGYSLSELAEK-AGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGVS 91 (111)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTTCC-----CCHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhcCCCCCCCcccccHHHHHHHHHHHHcCCC
Confidence 45688899884 889988886653 3444555543210000 00001123344444444 777
Q ss_pred HHHHHHHHHHHHHhhh
Q 025983 224 NQAVKAAQEAVQKSEE 239 (245)
Q Consensus 224 ~~v~~~A~~i~~~~~~ 239 (245)
++-.+....+++.+++
T Consensus 92 ~e~~~~i~~~i~~l~~ 107 (111)
T 1b0n_A 92 KKQFREFLDYQKWRKS 107 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777777776654
No 303
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=39.51 E-value=46 Score=24.21 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=26.4
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.+-+.+..|+|+. +|++..++.+.++.|.+
T Consensus 19 ~~~~~s~~ela~~-lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 19 GNARTAYAELAKQ-FGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HCTTSCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3457899999995 99999999999999975
No 304
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=39.45 E-value=41 Score=24.11 Aligned_cols=31 Identities=6% Similarity=0.106 Sum_probs=26.9
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.++-+.++.||++. ++++..++.+..+.|.+
T Consensus 50 ~~~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 50 EQAEGVNQRGVAAT-MGLDPSQIVGLVDELEE 80 (150)
T ss_dssp HSTTCCCSHHHHHH-HTCCHHHHHHHHHHHHT
T ss_pred hCCCCcCHHHHHHH-HCCCHhHHHHHHHHHHH
Confidence 45667999999995 99999999999999875
No 305
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=39.39 E-value=52 Score=23.40 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=25.4
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
-+.++.+||+. ++++..++.+.++.|.+
T Consensus 21 ~~~~~~ela~~-l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEA-LAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 47899999995 99999999999999976
No 306
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=39.24 E-value=51 Score=23.83 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=26.7
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.+-+.+..|+|+. +|++..++.+.++.|.+.
T Consensus 14 ~~~~~~~~ela~~-lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 14 YNAKYSLDEIARE-IRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TCTTSCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 4557999999994 999999999999999753
No 307
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=39.13 E-value=13 Score=21.71 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=12.6
Q ss_pred eCCCCceEccCCccccc
Q 025983 18 DHSAGDTVCSECGLVLE 34 (245)
Q Consensus 18 d~~~G~~vC~~CG~V~~ 34 (245)
|...+..+|..||.|=.
T Consensus 1 ~~~~~~~~CE~CG~~g~ 17 (43)
T 2w0t_A 1 GSGSEPAVCEMCGIVGT 17 (43)
T ss_dssp CCSCCEEECTTTCCEEE
T ss_pred CCCCceehhhhhcCcch
Confidence 34566789999998743
No 308
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=39.11 E-value=47 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+-+.+..|+|+. +|++..++.+.+++|.+.
T Consensus 19 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 19 DGKAPLREISKI-TGLAESTIHERIRKLRES 48 (151)
T ss_dssp CTTCCHHHHHHH-HCSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 457999999995 999999999999999753
No 309
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=39.08 E-value=37 Score=22.61 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 224 (245)
...|+.++|+. +||+..+|.+..+ | + . . ..+.+.++|..|+++.
T Consensus 36 ~glTq~eLA~~-~GiS~~tis~iE~------G-~------~--~-s~~~l~kIa~~L~v~~ 79 (88)
T 3t76_A 36 RDMKKGELREA-VGVSKSTFAKLGK------N-E------N--V-SLTVLLAICEYLNCDF 79 (88)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------T-C------C--C-CHHHHHHHHHHHTCCG
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------C-C------C--c-CHHHHHHHHHHHCcCH
Confidence 35789999994 8999999877654 2 1 1 1 2467889999998874
No 310
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.90 E-value=50 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.6
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+.++.||++. ++++..++.+.++.|.+.
T Consensus 58 ~~t~~ela~~-l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEF-LSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHH-TTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999864
No 311
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=38.87 E-value=37 Score=22.54 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=25.1
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
-+.+..||++. ++++..++.+.++.|.+
T Consensus 33 ~~~s~~ela~~-l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 33 GGMRVSEIARE-LDLSARFVRDRLKVLLK 60 (109)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 46899999995 99999999999999975
No 312
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=38.72 E-value=10 Score=22.84 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.5
Q ss_pred ceeeeCCCCceEccCCccccc
Q 025983 14 EVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 14 ~iv~d~~~G~~vC~~CG~V~~ 34 (245)
+.-.|...+..+|..||..+.
T Consensus 9 ~~~~~~~~~~~~C~~CG~~i~ 29 (49)
T 2l8e_A 9 SAELDKKANLLKCEYCGKYAP 29 (49)
T ss_dssp TGGGGGGCSEEECTTTCCEEE
T ss_pred cccccccCCCCcChhccCccc
Confidence 444555667788999999885
No 313
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=38.68 E-value=38 Score=23.80 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=27.2
Q ss_pred HhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 160 RQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 160 R~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+..+-+.++.||++. ++++..++.+..+.|.+
T Consensus 48 ~~~~~~~t~~eLa~~-l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 48 ENKEKEYYLKDIINH-LNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp HTCCSEEEHHHHHHH-SSSHHHHHHHHHHHHHH
T ss_pred hccCCCcCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 443468999999995 99999999999999875
No 314
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=38.61 E-value=20 Score=25.47 Aligned_cols=32 Identities=34% Similarity=0.740 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCceeeeC-CCCc--eEccCCccccc
Q 025983 3 DAFCSDCKKHTEVVFDH-SAGD--TVCSECGLVLE 34 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~-~~G~--~vC~~CG~V~~ 34 (245)
+..||.|+.++.+-+-. ++|. -+|..||.+++
T Consensus 73 ~lv~p~~~k~tRvg~~~~edG~kvRv~kk~g~~i~ 107 (110)
T 3v2d_Y 73 RPICPACGKPTRVRKKFLENGKKIRVCAKCGGALD 107 (110)
T ss_dssp EEBCTTTCSBCCEEEEECSSCCEEEEESSSCCBCC
T ss_pred EEEcCcCCCccEEEEEECCCCcEEEEEecCCCccC
Confidence 35699999866665553 5675 57999999884
No 315
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=38.55 E-value=35 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=29.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
...|.+|||.. +++++.++....+.+.+.|+..
T Consensus 211 ~G~s~~eIA~~-l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 211 RGKTNWEIATI-LNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 46789999996 9999999999999999999865
No 316
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=38.55 E-value=68 Score=21.81 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=33.0
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
.....|+.++|.. +|++..+|.+..+ |.. .| +...+.+++..|+++.+
T Consensus 21 ~~~glsq~~lA~~-~gis~~~is~~e~------g~~------~~---~~~~l~~la~~l~~~~~ 68 (113)
T 2eby_A 21 EPLDLKINELAEL-LHVHRNSVSALIN------NNR------KL---TTEMAFRLAKVFDTTVD 68 (113)
T ss_dssp TTTTCCHHHHHHH-HTSCHHHHHHHHT------TSS------CC---CHHHHHHHHHHHTCCHH
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCcCHH
Confidence 4456889999995 8999988877543 211 11 24567788888888755
No 317
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=38.52 E-value=55 Score=24.65 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
+.+.+..|++=+..+.- ...|+.+|++ .+||+..+|-+.|.
T Consensus 21 ~r~~Il~aA~~lf~~~G-~~~s~~~IA~-~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 21 TRDALFTAATELFLEHG-EGVPITQICA-AAGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSCHHHHHH-HHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC-CCcCHHHHHH-HhCCCHHHHHHHcC
Confidence 44566666666666666 8899999999 58999888876643
No 318
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=38.49 E-value=48 Score=22.76 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCCcCHHHHHH-HHhCCCHHHHHHHHHHHHHH
Q 025983 153 ACLYIACRQEDKPRTVKEICS-VANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 153 A~lY~acR~~~~~~tl~dia~-~~~~v~~~~i~~~~~~l~~~ 193 (245)
..+.+....++ +.|+.|+++ . .+++..++++..+.|.+.
T Consensus 19 fsiL~~L~~~~-~~t~~~Lae~~-l~~drstvsrnl~~L~r~ 58 (95)
T 1bja_A 19 ATILITIAKKD-FITAAEVREVH-PDLGNAVVNSNIGVLIKK 58 (95)
T ss_dssp HHHHHHHHHST-TBCHHHHHHTC-TTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCC-CCCHHHHHHHH-hcccHHHHHHHHHHHHHC
Confidence 34444445566 999999999 6 899999999999988764
No 319
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=38.18 E-value=40 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.4
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-|.+..||++. ++++..++.+..+.|.+.
T Consensus 42 ~~~~~~eLa~~-l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQT-LSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 46899999995 999999999999988653
No 320
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=38.13 E-value=94 Score=21.19 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
.+.|+.|||.. +|++..+++....+-.+.|... -....+..|...-+.+++
T Consensus 38 e~~s~~EIA~~-lgiS~~tVr~~~~rAlkkLR~~----------~~~~~l~~~~~~~~~~~~ 88 (99)
T 3t72_q 38 TDYTLEEVGKQ-FDVTRERIRQIEAKALRKLRHP----------SRSEVLRSGSSGSGTPEE 88 (99)
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCCHH
Confidence 67899999996 9999988886554444433211 012345556555555544
No 321
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=38.03 E-value=37 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=25.4
Q ss_pred CCCc-CHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPR-TVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~-tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+... +..++|+. ++|+..+++++++.|...
T Consensus 40 g~~lps~~eLa~~-lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 40 NEGLLVASKIADR-VGITRSVIVNALRKLESA 70 (102)
T ss_dssp TEEEECHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 4444 89999995 999999999999999763
No 322
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=38.02 E-value=81 Score=20.40 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 224 (245)
.....|+.++|.. ++++..+|.+..+ +.. .| ..+.+.+++..|+++.
T Consensus 23 ~~~glsq~~lA~~-~gis~~~is~~e~------g~~------~p---~~~~l~~la~~l~v~~ 69 (91)
T 1x57_A 23 QSKGLTQKDLATK-INEKPQVIADYES------GRA------IP---NNQVLGKIERAIGLKL 69 (91)
T ss_dssp HTTTCCHHHHHHH-HTSCHHHHHHHHH------TCS------CC---CHHHHHHHHHHHTBCC
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCcCH
Confidence 3456789999995 8999998876643 211 11 2356777777777653
No 323
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=37.97 E-value=8.9 Score=32.37 Aligned_cols=42 Identities=19% Similarity=0.470 Sum_probs=27.4
Q ss_pred CCCCCCCCCCceeeeCC--CCceEccCCccccc-------ccccccCcccccccC
Q 025983 4 AFCSDCKKHTEVVFDHS--AGDTVCSECGLVLE-------SHSIDETSEWRTFAN 49 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~--~G~~vC~~CG~V~~-------e~~id~~~ewr~f~~ 49 (245)
.+||.|+.. ++..+ ....||..||.=.. +.++|.|+ |..|..
T Consensus 25 ~kc~~~~~~---~~~~~l~~~~~v~~~~~~~~r~~arerI~~L~D~gs-F~E~~~ 75 (304)
T 2f9y_B 25 TKCDSCGQV---LYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGS-LVELGS 75 (304)
T ss_dssp ECCTTTCCC---EETTHHHHTTTBCTTTCCBCCCCHHHHHHHHSCSSC-CEECSC
T ss_pred Hhhhhccch---hhHHHHHHHhCCCCCCCCCCCCCHHHHHHHHCCCCc-EEEECC
Confidence 479999973 55543 56799999996532 23566653 555553
No 324
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=37.94 E-value=41 Score=23.57 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=22.3
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l 194 (245)
..|..|||.. +|++..++.+...+..+.|
T Consensus 38 g~s~~EIA~~-lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 38 DYSLAEIADE-FGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp CCCHHHHHHH-HTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHH
Confidence 4689999995 9999998887666555544
No 325
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=37.59 E-value=47 Score=21.27 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~ 223 (245)
...|..++|.. +|++..+|.+..+ |.. .| +...+.+++..|+++
T Consensus 24 ~glsq~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~i~~~l~~~ 67 (88)
T 2wiu_B 24 NGWTQSELAKK-IGIKQATISNFEN------NPD------NT---TLTTFFKILQSLELS 67 (88)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHH------CGG------GC---BHHHHHHHHHHTTCE
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHc------CCC------CC---CHHHHHHHHHHhCCC
Confidence 45789999995 8999999877654 211 11 246778888888875
No 326
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=37.55 E-value=40 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=24.9
Q ss_pred CCCc-CHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPR-TVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~-tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
|..+ +..++|.. ++|+..+++++++.|..
T Consensus 34 g~~Lps~~~La~~-~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVK-LAVNPNTVSRAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3445 59999995 99999999999999976
No 327
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=37.42 E-value=7.9 Score=25.12 Aligned_cols=19 Identities=26% Similarity=0.899 Sum_probs=11.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG 30 (245)
+.|.+|.. ++ ....|.+||
T Consensus 12 ~AC~~C~~---~~-----~~~~CPnC~ 30 (69)
T 1ryq_A 12 KACRHCHY---IT-----SEDRCPVCG 30 (69)
T ss_dssp EEETTTCB---EE-----SSSSCTTTC
T ss_pred hhHHhCCc---cc-----cCCcCCCcc
Confidence 45777775 33 245677777
No 328
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=37.18 E-value=14 Score=23.77 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.5
Q ss_pred CCCCceEccCCccccc
Q 025983 19 HSAGDTVCSECGLVLE 34 (245)
Q Consensus 19 ~~~G~~vC~~CG~V~~ 34 (245)
...|...|.-||+...
T Consensus 36 ~~~g~~~CpYCg~~f~ 51 (67)
T 2jrr_A 36 EDTGWVECPYCDCKYV 51 (67)
T ss_dssp TTTSEEEETTTTEEEE
T ss_pred CCCCeEECCCCCCEEE
Confidence 3579999999999874
No 329
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=36.91 E-value=36 Score=24.29 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=25.1
Q ss_pred CCCc-CHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPR-TVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~-tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
|..+ +..++|.. ++|+..+++++++.|..
T Consensus 32 G~~lPse~~La~~-~~vSr~tvr~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQ-EKINPNTVAKAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3445 89999995 99999999999999975
No 330
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=36.76 E-value=53 Score=23.38 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=25.5
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+.++.||++. ++++..++.+.++.|.+.
T Consensus 54 ~~t~~ela~~-l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 54 GATAPQLGAA-LQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 8999999995 999999999999999763
No 331
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=36.61 E-value=50 Score=24.33 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=25.7
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+-+.+..|+|+. +|++..++.+.++.|.+
T Consensus 22 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 22 NGRLTNVELSER-VALSPSPCLRRLKQLED 50 (162)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 456899999994 99999999999999975
No 332
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=36.56 E-value=12 Score=27.25 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=13.9
Q ss_pred CCCCC-CCCCCceeee--CCCCceEccCCcccccc
Q 025983 4 AFCSD-CKKHTEVVFD--HSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~-Cg~~~~iv~d--~~~G~~vC~~CG~V~~e 35 (245)
.+|+. ||. ++.- ...|.++| ||.-++.
T Consensus 8 YkC~~~CGn---ivev~~~g~~~l~C--CG~~m~~ 37 (128)
T 1y07_A 8 FLQKESAGF---FLGMDAPAGSSVAC--GSEVLRA 37 (128)
T ss_dssp ECC-----C---EEEESCCTTCEEEE--TTEEEEC
T ss_pred EECCCCCCC---EEEEEcCCCcceee--cCccccc
Confidence 57999 996 3332 45556677 8877653
No 333
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=36.36 E-value=8.6 Score=21.24 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=17.1
Q ss_pred CCCCCCCCCceeeeCCCCceEccCC
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSEC 29 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~C 29 (245)
.=|.|+++ --..|.-+|-..|+.|
T Consensus 4 yD~~C~KP-C~T~DDCS~gw~CqaC 27 (38)
T 4cpa_I 4 ADPICNKP-CKTHDDCSGAWFCQAC 27 (38)
T ss_dssp SCTTTTCB-CSSSSSSCCCSSCCEE
T ss_pred cccccCCC-ccCccccccchHHHHH
Confidence 34778873 3356788888999887
No 334
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=35.94 E-value=69 Score=21.84 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
-|.++.||++. ++++..++.+.++.|.+ .|+
T Consensus 37 ~~~s~~eLa~~-lgis~stvs~~L~~L~~-~Gl 67 (108)
T 2kko_A 37 GERAVEAIATA-TGMNLTTASANLQALKS-GGL 67 (108)
T ss_dssp CCEEHHHHHHH-HTCCHHHHHHHHHHHHH-HTS
T ss_pred CCcCHHHHHHH-HCcCHHHHHHHHHHHHH-CCC
Confidence 57899999995 89999999999999865 443
No 335
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.86 E-value=17 Score=25.13 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=6.0
Q ss_pred CCCCCCCCC
Q 025983 4 AFCSDCKKH 12 (245)
Q Consensus 4 ~~Cp~Cg~~ 12 (245)
..||.|+..
T Consensus 46 ~~C~~C~G~ 54 (104)
T 2ctt_A 46 QHCHYCGGS 54 (104)
T ss_dssp EECSSSSSS
T ss_pred ccCCCCCCC
Confidence 457778764
No 336
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=35.56 E-value=79 Score=22.91 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=34.5
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
....|+.++|.. +|++...|.+..+ |.. .| ....+.+++..|+++.+
T Consensus 79 ~~glTq~elA~~-lGis~s~is~~E~------G~~------~p---s~~~l~~la~~lgv~~~ 125 (141)
T 3kxa_A 79 KKGFTQSELATA-AGLPQPYLSRIEN------SKQ------SL---QDKTVQKLANALGVSPL 125 (141)
T ss_dssp HTTCCHHHHHHH-TTCCHHHHHHHHH------TCS------CC---CHHHHHHHHHHHTCCHH
T ss_pred HcCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCCCHH
Confidence 345799999995 9999999887654 211 11 34788899999998865
No 337
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.44 E-value=72 Score=25.53 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=28.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
...+.+|||+. +++++.++.....+.++.|+..
T Consensus 211 ~G~s~~EIA~~-L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 211 KGLSSKEIAAT-LYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 34689999995 9999999999999999998864
No 338
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=35.28 E-value=32 Score=20.11 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=18.6
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.+..+||.. +|++..++.+.++
T Consensus 32 ~s~~eIA~~-lgis~~TV~~~l~ 53 (55)
T 2x48_A 32 YTVQQIANA-LGVSERKVRRYLE 53 (55)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHT
T ss_pred CCHHHHHHH-HCcCHHHHHHHHH
Confidence 589999995 9999999987653
No 339
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.27 E-value=79 Score=22.23 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=26.7
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+-+.++.++++. ++++..++.+..+.|.+.
T Consensus 48 ~~~~~~~~la~~-l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAA-ERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-hCCChhhHHHHHHHHHHC
Confidence 558999999995 999999999999999763
No 340
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=35.25 E-value=88 Score=24.92 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
....+..+.-|+--. ...++++.++|+. +++++..+.+.++
T Consensus 167 ~~~~~~~~~~~i~~~-~~~~~sl~~lA~~-~~~S~~~l~r~fk 207 (276)
T 3gbg_A 167 DLDAMEKISCLVKSD-ITRNWRWADICGE-LRTNRMILKKELE 207 (276)
T ss_dssp TTCHHHHHHHHHHHT-TTSCCCHHHHHHH-HTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh-hcCCCCHHHHHHH-HCcCHHHHHHHHH
Confidence 334555666666544 4459999999995 9999999998875
No 341
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=34.76 E-value=23 Score=31.11 Aligned_cols=31 Identities=19% Similarity=0.567 Sum_probs=19.9
Q ss_pred CCCCCCCCCCce---eee-CCCCc-----eEccCCccccc
Q 025983 4 AFCSDCKKHTEV---VFD-HSAGD-----TVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~i---v~d-~~~G~-----~vC~~CG~V~~ 34 (245)
..||.||..... .++ |--++ ..|..||+=-.
T Consensus 221 s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 221 TNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp ECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred ccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 369999975322 122 44555 57999998654
No 342
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.75 E-value=78 Score=22.14 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=27.3
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.+-|.+..+|++. ++++..++.+.++.|.+.
T Consensus 49 ~~~~~t~~~la~~-l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 49 HRDSPTQRELAQS-VGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CSSCCBHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHH-hCCChhhHHHHHHHHHHC
Confidence 5668999999995 999999999999999763
No 343
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=34.72 E-value=29 Score=23.72 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.2
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKEY 189 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~ 189 (245)
.|+.|||.. +||+..+|++.+..
T Consensus 21 ~ti~dlA~~-~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKE-FGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHTT
T ss_pred CCHHHHHHH-HCCCHHHHHHHHcC
Confidence 799999995 89999999998753
No 344
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=34.71 E-value=61 Score=22.34 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=31.1
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~ 223 (245)
...|+.++|+. +|++..+|.+..+ |.. .| +.+.+.+++..|+++
T Consensus 35 ~gltq~elA~~-~gis~~~is~~E~------G~~------~p---s~~~l~~ia~~l~v~ 78 (111)
T 3mlf_A 35 YGLTQKELGDL-FKVSSRTIQNMEK------DST------NI---KDSLLSKYMSAFNVK 78 (111)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHH------CCT------TC---CHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHC------CCC------CC---CHHHHHHHHHHhCcC
Confidence 45789999994 8999998877644 211 11 246778888888876
No 345
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=34.62 E-value=64 Score=22.84 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=25.5
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
|.++.|+++. ++++..++.+.++.|.+.
T Consensus 56 ~~t~~ela~~-l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 56 DLTVGELSNK-MYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCchhHHHHHHHHHHC
Confidence 7999999995 999999999999999864
No 346
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=34.61 E-value=25 Score=23.35 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=20.0
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 22 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 50 (84)
T 1z2q_A 22 PACNGCGCV----FTTTVRRHHCRNCGYVLCGD 50 (84)
T ss_dssp CBCTTTCCB----CCTTSCCEECTTTCCEECTG
T ss_pred CCCcCcCCc----cccchhcccccCCCcEEChH
Confidence 469999973 44445567888888887543
No 347
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=34.51 E-value=13 Score=25.51 Aligned_cols=22 Identities=27% Similarity=0.721 Sum_probs=16.0
Q ss_pred CCCCCCCCCceeeeCCCCceEccCCcc
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSECGL 31 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~CG~ 31 (245)
.|.-||+ .+.-. -...|..||+
T Consensus 18 lCrRCG~-~syH~----qK~~Ca~CGy 39 (94)
T 4a18_A 18 LCRRCGK-ATYHK----QKLRCAACGY 39 (94)
T ss_dssp ECTTTCS-EEEET----TTTEESSSCG
T ss_pred eecCcCc-hhhhh----ccccccccCC
Confidence 5999998 34322 3569999999
No 348
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=34.46 E-value=62 Score=22.74 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-|.++.++++. ++++..++.+..+.|.+.
T Consensus 42 ~~~t~~~la~~-l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 42 PGIIQEKIAEL-IKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TTEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHH-HCCCHhHHHHHHHHHHHC
Confidence 37999999995 999999999999999864
No 349
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.34 E-value=22 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=20.7
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~ 37 (245)
..|..|+.. |..-.-.--|..||.|+=..-
T Consensus 70 ~~C~~C~~~----Fs~~~RrHHCR~CG~vfC~~C 99 (125)
T 1joc_A 70 QNCMACGKG----FSVTVRRHHCRQCGNIFCAEC 99 (125)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGGG
T ss_pred CCCcCcCCc----cccccccccCCCCCeEEChHH
Confidence 469999973 344455678888888885443
No 350
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=34.16 E-value=65 Score=23.68 Aligned_cols=30 Identities=7% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.+-+.++.||++. ++++..++.+.++.|.+
T Consensus 65 ~~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 65 LPPDQSQIQLAKA-IGIEQPSLVRTLDQLED 94 (166)
T ss_dssp SCSSEEHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHH-HCCCHhhHHHHHHHHHH
Confidence 4567999999995 99999999999999976
No 351
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=33.98 E-value=51 Score=21.59 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=25.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-+.++.|+++. ++++..++.+..+.|.+.
T Consensus 29 ~~~~~~ela~~-l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKV-LDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 47999999995 999999999999998764
No 352
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=33.88 E-value=16 Score=27.26 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=16.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
++|+.||. +.+=+ ..+|..||.-
T Consensus 48 ~rC~~CG~---~~fPP---r~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGR---IFVPA---RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESC---CSEETTTTEE
T ss_pred EEECCCCc---EEeCC---CCCCCCCCCC
Confidence 57999997 23423 3589999865
No 353
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=33.88 E-value=17 Score=21.97 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=18.6
Q ss_pred CCCCCCCCC----Cce-eeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKH----TEV-VFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~----~~i-v~d~~~G~~vC~~CG~V~~ 34 (245)
..|+.||.. ..+ ..........|..||....
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 369999962 001 1223345688999998764
No 354
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=33.87 E-value=73 Score=21.78 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=31.0
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 224 (245)
..|+.++|.. +|++..+|.+..+ |.. .| +.+.+.+++..|+++.
T Consensus 41 glsq~~lA~~-~gis~~~is~~E~------g~~------~~---~~~~l~~la~~l~v~~ 84 (117)
T 3f52_A 41 GVTLRELAEA-SRVSPGYLSELER------GRK------EV---SSELLASVCHALGASV 84 (117)
T ss_dssp TCCHHHHHHH-TTSCHHHHHHHHT------TSS------CC---CHHHHHHHHHHHTCCH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHC------CCC------CC---CHHHHHHHHHHhCCCH
Confidence 4689999994 9999988876633 211 11 3467788888888875
No 355
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=33.86 E-value=61 Score=21.67 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.9
Q ss_pred CcCHHHHHHHHhCCCHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRA 186 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~ 186 (245)
..+.+.||+ +.|+++.+|.|.
T Consensus 24 ~~gQ~~vAe-~~GvdeStISR~ 44 (83)
T 1zs4_A 24 MLGTEKTAE-AVGVDKSQISRW 44 (83)
T ss_dssp HHCHHHHHH-HHTSCHHHHHHH
T ss_pred HHhhHHHHH-HhCCCHHHHhhh
Confidence 356889999 599999999985
No 356
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=33.85 E-value=23 Score=23.92 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=20.8
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~ 37 (245)
..|..|+.. |..-.-.--|..||.|+=..-
T Consensus 21 ~~C~~C~~~----F~~~~RrhhCr~CG~v~C~~C 50 (90)
T 3t7l_A 21 PNCMNCQVK----FTFTKRRHHCRACGKVFCGVC 50 (90)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGGG
T ss_pred CcCcCCCCc----ccchhhCccccCCCCEECCcc
Confidence 459999973 334455688999998885443
No 357
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=33.66 E-value=21 Score=33.81 Aligned_cols=23 Identities=35% Similarity=0.798 Sum_probs=13.1
Q ss_pred CCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
.||.||.. ...|+ .|..||.+++
T Consensus 142 tcP~c~~~------~~~Gd-~c~~~G~~l~ 164 (722)
T 1rqg_A 142 TCPYCGAE------DQKGD-QCEVCGRPLT 164 (722)
T ss_dssp BCSSSCCS------CCCTT-TCSSSCCCCC
T ss_pred ccCccCCc------cCCcc-hhhhcccccC
Confidence 48888862 23454 3666666553
No 358
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=33.63 E-value=19 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.7
Q ss_pred CceeeeC--CCCceEccCCccccc
Q 025983 13 TEVVFDH--SAGDTVCSECGLVLE 34 (245)
Q Consensus 13 ~~iv~d~--~~G~~vC~~CG~V~~ 34 (245)
+.+.++- ..|...|.-||+..-
T Consensus 41 PrVyL~ld~~~g~~~CpYCg~~f~ 64 (80)
T 2jvm_A 41 PRVWLSIPHETGFVECGYCDRRYI 64 (80)
T ss_dssp CCEEEECCTTTCEEECSSSSCEEE
T ss_pred CEEEEEccCCCCeEECCCCCCEEE
Confidence 4555554 589999999999873
No 359
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=33.55 E-value=70 Score=22.28 Aligned_cols=29 Identities=7% Similarity=0.054 Sum_probs=25.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-+.+..++++. ++++..++.+..+.|.+.
T Consensus 44 ~~~~~~ela~~-l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 44 APLHQLALQER-LQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp CSBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 37999999995 999999999999999863
No 360
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=33.54 E-value=62 Score=23.43 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=25.9
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+-+.+..|+|+. +|++..++.+.+++|.+
T Consensus 19 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 19 DGRATLSELATR-AGLSVSAVQSRVRRLES 47 (150)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 457999999994 99999999999999975
No 361
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=33.53 E-value=52 Score=23.59 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=24.9
Q ss_pred CCCc-CHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPR-TVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~-tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
|..+ +..++|+. ++||..+++++++.|..
T Consensus 25 G~~LPse~~La~~-~gvSr~tVr~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAF-HRINPATARNGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHH-TTCCHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3455 79999995 99999999999999975
No 362
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=33.47 E-value=46 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=25.7
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+.+..++++ .++++..++.+.++.|.+.
T Consensus 54 ~~~~~~la~-~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 54 TLTVKKMGE-QLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp EEEHHHHHH-TTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH-HHCCCcCcHHHHHHHHHHC
Confidence 889999999 5999999999999999864
No 363
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.21 E-value=66 Score=22.41 Aligned_cols=76 Identities=5% Similarity=0.020 Sum_probs=42.1
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHH-----------HHHHHHHhCCccCCccccC-CCCHHhHHHHHhhhc-CCCHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRA-----------KEYIVKQLGLETGQSVEMG-TIHAGDFMRRFCSNL-GMNNQAVKA 229 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~-----------~~~l~~~l~~~~~~~~~~~-~~~p~~~i~r~~~~L-~l~~~v~~~ 229 (245)
....|+.++|.. +|++..+|.+. +..|.+.|++....-+... ..........+...+ .++++-...
T Consensus 23 ~~glsq~~lA~~-~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 101 (126)
T 3ivp_A 23 KQGLTREQVGAM-IEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLVI 101 (126)
T ss_dssp HTTCCHHHHHHH-HTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTTTCCHHHHHH
T ss_pred HcCCCHHHHHHH-hCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHHcCCHHHHHH
Confidence 345689999994 89999888875 4466777776431111000 111122333333333 457776666
Q ss_pred HHHHHHHhhh
Q 025983 230 AQEAVQKSEE 239 (245)
Q Consensus 230 A~~i~~~~~~ 239 (245)
...+++.+.+
T Consensus 102 i~~~i~~l~~ 111 (126)
T 3ivp_A 102 MESVADGIVK 111 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 364
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=33.17 E-value=52 Score=23.23 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=22.0
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
|.++.|+++. ++++..++.+..+.|.+
T Consensus 51 ~~t~~eLa~~-l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 51 GLNLQDLGRQ-MCRDKALITRKIRELEG 77 (142)
T ss_dssp TCCHHHHHHH-HC---CHHHHHHHHHHH
T ss_pred CcCHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 8999999995 99999999999999976
No 365
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.14 E-value=13 Score=28.11 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=10.7
Q ss_pred ceEccCCccccc
Q 025983 23 DTVCSECGLVLE 34 (245)
Q Consensus 23 ~~vC~~CG~V~~ 34 (245)
.++|..||.|++
T Consensus 107 HliC~~CG~v~e 118 (162)
T 4ets_A 107 HMICKNCGKIIE 118 (162)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 499999999985
No 366
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=33.14 E-value=61 Score=24.37 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=26.0
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+-+.+..|+|+. +|++..++.+.+++|.+.
T Consensus 39 ~~~~s~~eLA~~-lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 39 DGKAPLREISKI-TGLAESTIHERIRKLRES 68 (171)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 347899999994 999999999999999753
No 367
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=33.02 E-value=22 Score=21.56 Aligned_cols=21 Identities=29% Similarity=0.843 Sum_probs=13.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG 30 (245)
..||.|+....++ ...|..|+
T Consensus 10 ~~C~~C~GsG~~~------~~~C~~C~ 30 (53)
T 2bx9_A 10 VACPKCERAGEIE------GTPCPACS 30 (53)
T ss_dssp EECTTTTTSSEET------TEECTTTT
T ss_pred ccCCCCcceeccC------CCCCccCC
Confidence 3699999754332 25677774
No 368
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.02 E-value=26 Score=27.78 Aligned_cols=31 Identities=23% Similarity=0.663 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccccccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~ 37 (245)
...|+.|+.. |..-.-.--|..||.|+=...
T Consensus 161 ~~~C~~C~~~----F~~~~rrhhCr~CG~v~C~~C 191 (220)
T 1dvp_A 161 GRVCHRCRVE----FTFTNRKHHCRNCGQVFCGQC 191 (220)
T ss_dssp CSBCTTTCCB----CCSSSCCEECTTTCCEECSTT
T ss_pred CCccCCCCCc----cCCcccccccCCcCCEEChHH
Confidence 3579999973 344456788999999986443
No 369
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=32.92 E-value=97 Score=20.97 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=25.6
Q ss_pred CCCcCHHHHHHHHh-CCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVAN-GATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~-~v~~~~i~~~~~~l~~ 192 (245)
.-|.++.|+++. + +++..++.+..+.|.+
T Consensus 25 ~~~~~~~eLa~~-l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRL-MPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHH-CTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHH-hcCCCHHHHHHHHHHHHH
Confidence 358999999994 8 9999999999999875
No 370
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.88 E-value=67 Score=23.18 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-+.++.+|++. ++++..++.+.++.|.+.
T Consensus 65 ~~~t~~ela~~-l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 65 DGLPIGTLGIF-AVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp CSEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 47999999995 999999999999999864
No 371
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.83 E-value=51 Score=23.50 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=23.4
Q ss_pred HHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 155 LYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 155 lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+++..+..+-+.++.|+++ .++++..++.+.++.|.+
T Consensus 47 L~~l~~~~~~~~t~~eLa~-~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 47 IGYIYENQESGIIQKDLAQ-FFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHTTTCCCHHHHHH-C------CHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHH-HHCCChhHHHHHHHHHHH
Confidence 3333344446899999999 599999999999999976
No 372
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.78 E-value=35 Score=22.59 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=18.5
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~ 36 (245)
..|..|+.. |..-.=.--|..||.|+=..
T Consensus 15 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC~~ 43 (84)
T 1x4u_A 15 GNCTGCSAT----FSVLKKRRSCSNCGNSFCSR 43 (84)
T ss_dssp SSCSSSCCC----CCSSSCCEECSSSCCEECTT
T ss_pred CcCcCcCCc----cccchhhhhhcCCCcEEChh
Confidence 469999974 33334456677777777433
No 373
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=32.70 E-value=14 Score=25.28 Aligned_cols=22 Identities=27% Similarity=0.884 Sum_probs=15.6
Q ss_pred CCCCCCCCCceeeeCCCCceEccCCcc
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSECGL 31 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~CG~ 31 (245)
.|.-||+ .+.-. -...|..||+
T Consensus 18 lCrRCG~-~syH~----qK~~Ca~CGy 39 (94)
T 3iz5_l 18 LCVRCGR-RSFHL----QKSTCSSCGY 39 (94)
T ss_dssp ECTTTCS-EEEEG----GGTEETTTCS
T ss_pred eecCcCc-hhhhc----ccccccccCC
Confidence 4999998 34332 2568999998
No 374
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=32.69 E-value=63 Score=24.24 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=25.7
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+-+.+..|+|+. +|++..++.+.+++|.+
T Consensus 29 ~~~~s~~eLA~~-lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 29 DARLTISELSEQ-LKKPESTIHFRIKKLQE 57 (171)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 457899999995 99999999999999965
No 375
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=32.68 E-value=83 Score=23.54 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=32.8
Q ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHH
Q 025983 167 TVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQA 226 (245)
Q Consensus 167 tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 226 (245)
|+.++|+ .+|++..+|.+..+ +.. .|.+.+.+++..|+++.+.
T Consensus 22 tq~elA~-~~Gis~~~i~~~e~------g~~----------~p~~~l~~ia~~~~v~~~~ 64 (189)
T 2fjr_A 22 QKIQLAN-HFDIASSSLSNRYT------RGA----------ISYDFAAHCALETGANLQW 64 (189)
T ss_dssp SHHHHHH-HTTCCHHHHHHHHH------SSS----------CCHHHHHHHHHHHCCCHHH
T ss_pred CHHHHHH-HhCcCHHHHHHHHh------CCC----------CCHHHHHHHHHHHCCCHHH
Confidence 9999999 49999998887654 221 2357888999999988653
No 376
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=32.63 E-value=54 Score=22.24 Aligned_cols=28 Identities=4% Similarity=0.124 Sum_probs=25.0
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
-|.+..||++. ++++..++.+..+.|.+
T Consensus 33 ~~~~~~ela~~-l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 33 ADQSASSLATR-LPVSRQAIAKHLNALQA 60 (114)
T ss_dssp SCBCHHHHHHH-SSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 46899999995 99999999999999865
No 377
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=32.51 E-value=72 Score=21.09 Aligned_cols=22 Identities=5% Similarity=0.128 Sum_probs=17.5
Q ss_pred CCcCHHHHHHHHhCCCHHH----HHHH
Q 025983 164 KPRTVKEICSVANGATKKE----IGRA 186 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~----i~~~ 186 (245)
...|+.++|.. +|++..+ |.+.
T Consensus 13 ~glsq~~lA~~-~gis~~~~~~~is~~ 38 (98)
T 3lfp_A 13 AGISQEKLGVL-AGIDEASASARMNQY 38 (98)
T ss_dssp HTCCHHHHHHH-TTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-hCCCcchhhhHHHHH
Confidence 45789999994 8999999 6554
No 378
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=32.49 E-value=62 Score=21.18 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=25.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~ 195 (245)
...|..+||.. +|+++.+|++..-.|.+.=.
T Consensus 28 ~~~Ta~~IAkk-Lg~sK~~vNr~LY~L~kkG~ 58 (75)
T 1sfu_A 28 DYTTAISLSNR-LKINKKKINQQLYKLQKEDT 58 (75)
T ss_dssp CEECHHHHHHH-TTCCHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHH-HCCCHHHHHHHHHHHHHCCC
Confidence 34899999995 99999999999887776433
No 379
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=32.45 E-value=63 Score=22.17 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=32.2
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQ 225 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 225 (245)
...|+.++|+. +|++..+|.+..+ |.. .| ....+.+++..|+++.+
T Consensus 33 ~gltq~elA~~-~gis~~~is~~E~------G~~------~p---~~~~l~~ia~~l~v~~~ 78 (114)
T 3vk0_A 33 KGWSQEELARQ-CGLDRTYVSAVER------KRW------NI---ALSNIEKMAAALGVAAY 78 (114)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHTT------TCC------CC---CHHHHHHHHHHHTSCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHhCCCHH
Confidence 34789999995 8999988776532 211 11 34788899999998754
No 380
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=32.37 E-value=97 Score=19.72 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 224 (245)
.....|+.++|.. +|++..+|.+..+ |. .... ..+.+.+++..|+++.
T Consensus 28 ~~~glsq~elA~~-~gis~~~is~~e~------g~-------~~~~-~~~~l~~la~~l~~~~ 75 (83)
T 2a6c_A 28 RNSGLTQFKAAEL-LGVTQPRVSDLMR------GK-------IDLF-SLESLIDMITSIGLKV 75 (83)
T ss_dssp HTTTCCHHHHHHH-HTSCHHHHHHHHT------TC-------GGGC-CHHHHHHHHHHTTCCC
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHc------CC-------CCCC-CHHHHHHHHHHcCCCe
Confidence 3456789999995 8999988877644 11 1001 2367888999888764
No 381
>3nfi_A DNA-directed RNA polymerase I subunit RPA49; winged helix, transcription, DNA binding, DN protein; HET: MSE PE4; 1.90A {Saccharomyces cerevisiae} PDB: 3nfh_A
Probab=32.19 E-value=54 Score=26.38 Aligned_cols=69 Identities=9% Similarity=0.046 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHhhCC----------CCCCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHH
Q 025983 120 GLVATIKDRANEIYKKVEDQK----------SSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEY 189 (245)
Q Consensus 120 ~Lp~~v~~~A~~i~~~~~~~~----------~~~gr~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~ 189 (245)
++|+.+++.-..-|... +.+ .......+-+.+-++-+++...+....+.+++. .++++..+|...|+.
T Consensus 123 ~~P~~v~~~ll~~Ft~~-~~g~~~~s~~~~~~is~~~~dkLl~yilvLaL~idnf~vd~~~La~-DLkl~~~~l~~~fr~ 200 (237)
T 3nfi_A 123 SPPEILVDGILSRFTVI-KPGQFGRSKDRSYFIDPQNEDKILCYILAIIMHLDNFIVEITPLAH-ELNLKPSKVVSLFRV 200 (237)
T ss_dssp CCCHHHHHHHHHHHSEE-CCCHHHHHHCCBEECCHHHHHHHHHHHHHHHHHHTTTEEEHHHHHH-HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccCC-cCCccccccccccccCHHHHHHHHHHHHHHHHHHcCCccCHHHHHH-HhCCCHHHHHHHHHH
Confidence 47777777755444422 111 112234567888899999999999999999999 599999999888875
Q ss_pred H
Q 025983 190 I 190 (245)
Q Consensus 190 l 190 (245)
|
T Consensus 201 l 201 (237)
T 3nfi_A 201 L 201 (237)
T ss_dssp T
T ss_pred h
Confidence 4
No 382
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=32.14 E-value=64 Score=23.72 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 147 QDALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 147 ~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.+.+..|++=+..+ .|. ..|+.+|++ .+||++.+|-+.|.
T Consensus 6 r~~Il~aa~~l~~~-~G~~~~t~~~Ia~-~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 6 KEMILRTAIDYIGE-YSLETLSYDSLAE-ATGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHHHHHHH-SCSTTCCHHHHHH-HHCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHH-cChhhccHHHHHH-HhCCChHHHHHhCc
Confidence 34455555544444 554 699999999 58999888876643
No 383
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=31.92 E-value=1.2e+02 Score=20.55 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=42.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHH-HHHHHHHHHHhC-CCCcCHHHHHHHHhCC-CHHHHHHHHH
Q 025983 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDAL-LAACLYIACRQE-DKPRTVKEICSVANGA-TKKEIGRAKE 188 (245)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~i-aAA~lY~acR~~-~~~~tl~dia~~~~~v-~~~~i~~~~~ 188 (245)
|.++|+.++++.....+ +|++.. |.++... --.=+-.|+++. ....++.|||.. +|- +...+.+.|+
T Consensus 26 ~~~lA~~~~~S~~~l~r---~fk~~~------G~s~~~~~~~~Rl~~A~~lL~~~~~~i~eIA~~-~Gf~~~s~F~r~Fk 95 (113)
T 3oio_A 26 TDDIAYYVGVSRRQLER---LFKQYL------GTVPSKYYLELRLNRARQLLQQTSKSIVQIGLA-CGFSSGPHFSSTYR 95 (113)
T ss_dssp HHHHHHHHTSCHHHHHH---HHHHHT------SSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-TTCSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHHHH------CcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-HCCCCHHHHHHHHH
Confidence 77889999998754443 666654 3444322 222222333322 236789999984 775 4666766666
Q ss_pred HHHHHhCC
Q 025983 189 YIVKQLGL 196 (245)
Q Consensus 189 ~l~~~l~~ 196 (245)
+..|+
T Consensus 96 ---~~~G~ 100 (113)
T 3oio_A 96 ---NHFNI 100 (113)
T ss_dssp ---HHHSS
T ss_pred ---HHHCc
Confidence 45554
No 384
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=31.74 E-value=70 Score=26.55 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=26.1
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
...+.++.|||+. ++||..+|+|-..++.+
T Consensus 18 ~~~~~~~~ela~~-l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 18 YEQDMTQAQIARE-LGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HTSCCCHHHHHHH-TTCCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3456999999995 99999999999998865
No 385
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=31.61 E-value=30 Score=28.95 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
....|++|||+. +|||..|+.++++
T Consensus 7 ~~~~Ti~diA~~-aGVS~~TVSrvLn 31 (366)
T 3h5t_A 7 QQYGTLASIAAK-LGISRTTVSNAYN 31 (366)
T ss_dssp CCTTHHHHHHHH-HTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHH-hCCCHHHHHHHHC
Confidence 345789999995 8999999998875
No 386
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=31.55 E-value=69 Score=24.16 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=26.6
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.+-+.++.+||+. ++++..++.+..+.|.+
T Consensus 54 ~~~~~t~~eLa~~-l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 54 PEEETTLNNIARK-MGTSKQNINRLVANLEK 83 (189)
T ss_dssp CGGGCCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 3568999999995 99999999999999975
No 387
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=31.42 E-value=66 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.7
Q ss_pred CcCHHHHHHHHhCCCHH-HHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKK-EIGRAKEYIVKQ 193 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~-~i~~~~~~l~~~ 193 (245)
|.|..+||+ .++++.. .+++.+..|.+.
T Consensus 25 ~~ta~eiA~-~Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 25 DSSALNLAK-NIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp CEEHHHHHH-HHCGGGHHHHHHHHHHHHHT
T ss_pred CcCHHHHHH-HcCCCcHHHHHHHHHHHHHC
Confidence 789999999 5999998 999999988763
No 388
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=31.35 E-value=11 Score=31.84 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|-.||+...--....-|-.+|.+|.-|-.
T Consensus 38 ~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr 68 (329)
T 3o47_A 38 NVCFECGAFNPQWVSVTYGIWICLECSGRHR 68 (329)
T ss_dssp TBCTTTCCBSCCEEEGGGTEEECHHHHHHHH
T ss_pred CcCCCCCCCCCCeEEecCCEEEChhhhhhhc
Confidence 4799999843223356789999999987764
No 389
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=31.34 E-value=14 Score=24.02 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=10.2
Q ss_pred eEccCCcccccc
Q 025983 24 TVCSECGLVLES 35 (245)
Q Consensus 24 ~vC~~CG~V~~e 35 (245)
+.|-.||.|+.+
T Consensus 5 VRCFTCGkvi~~ 16 (70)
T 1twf_J 5 VRCFSCGKVVGD 16 (70)
T ss_dssp SBCTTTCCBCTT
T ss_pred eecCCCCCChHH
Confidence 579999999974
No 390
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=31.25 E-value=79 Score=22.12 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=25.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-|.++.++++. ++++..++.+.++.|.+.
T Consensus 46 ~~~~~~~la~~-l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVL-LGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCchhHHHHHHHHHHC
Confidence 47999999995 999999999999999864
No 391
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=31.18 E-value=46 Score=24.04 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=27.0
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
..+-|.++.|+++. ++++..++.+..+.|.+
T Consensus 47 ~~~~~~t~~eLa~~-l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 47 SKSGELPMSKIGER-LMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp SGGGEEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHH-HCCCHHHHHHHHHHHHh
Confidence 34568999999995 99999999999999975
No 392
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=31.11 E-value=16 Score=25.02 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q 025983 4 AFCSDCKKH 12 (245)
Q Consensus 4 ~~Cp~Cg~~ 12 (245)
.+||.||..
T Consensus 53 akcprcgae 61 (131)
T 2x5c_A 53 AKCPRCGAE 61 (131)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 369999974
No 393
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=31.03 E-value=1.2e+02 Score=21.23 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=27.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
-+.++.|+++. ++++..++.+..+.|.+ .|+
T Consensus 58 ~~~s~~ela~~-lgis~stvs~~L~~Le~-~Gl 88 (122)
T 1r1t_A 58 SELCVGDLAQA-IGVSESAVSHQLRSLRN-LRL 88 (122)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHH-TTS
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH-CCC
Confidence 47899999995 99999999999999987 665
No 394
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=31.02 E-value=59 Score=21.72 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=24.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
-|.+..||++. ++++..++.+..+.|.+
T Consensus 35 ~~~~~~ela~~-l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQ-IGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHH-HTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 47999999995 89999999999998864
No 395
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=30.90 E-value=84 Score=22.02 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=26.9
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+-|.++.|+++. ++++..++.+..+.|.+.
T Consensus 48 ~~~~~~~ela~~-l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANR-YFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHH-hCCCchhHHHHHHHHHHC
Confidence 568999999995 999999999999999864
No 396
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.82 E-value=56 Score=24.34 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=22.1
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l 194 (245)
...+.+|||.. +|+++.++.+.+.+.++.|
T Consensus 155 ~g~s~~EIA~~-lgis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 155 DGLSYEEIAAI-MDCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TCCCHHHHHHH-TTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 34789999995 9999988876655544443
No 397
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=30.81 E-value=95 Score=22.28 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.3
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+-+.++.||++. ++++..++.+.++.|.+.
T Consensus 61 ~~~~t~~ela~~-l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDR-TAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 348999999995 999999999999999764
No 398
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.73 E-value=67 Score=22.40 Aligned_cols=28 Identities=0% Similarity=-0.021 Sum_probs=25.4
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
|.++.++++. ++++..++.+.++.|.+.
T Consensus 50 ~~t~~ela~~-l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 50 EMESYQLANQ-ACILRPSMTGVLARLERD 77 (142)
T ss_dssp SEEHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHhHHHHHHHHHHHC
Confidence 7999999995 999999999999999864
No 399
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=30.70 E-value=22 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~ 37 (245)
..|..|+.. |..-.-.--|..||.|+=..-
T Consensus 20 ~~C~~C~~~----Fs~~~RkHHCR~CG~ifC~~C 49 (120)
T 1y02_A 20 PSCKSCGAH----FANTARKQTCLDCKKNFCMTC 49 (120)
T ss_dssp CCCTTTCCC----CSSGGGCEECTTTCCEECGGG
T ss_pred CcccCcCCc----cccccccccCCCCCCeeCHHH
Confidence 469999974 344456778999998885444
No 400
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=30.61 E-value=63 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.3
Q ss_pred HhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 160 RQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 160 R~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
++.....+..+|++ .+|+|.-+|.|.-+.|..
T Consensus 53 ~lL~~G~SyreIa~-~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 53 KMLTDKRTYLDISE-KTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHHTTCCHHHHHH-HHCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHH-HHCccHHHHHHHHHHHHc
Confidence 33334489999999 599999999998777754
No 401
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=30.55 E-value=71 Score=23.17 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+.+..|++=+..+ .| ...|+.+||+. +||+..+|-+.|
T Consensus 10 ~r~~Il~aa~~l~~~-~G~~~~tv~~Ia~~-agvs~~t~Y~~F 50 (195)
T 3ppb_A 10 KKQAILETALQLFVS-QGFHGTSTATIARE-AGVATGTLFHHF 50 (195)
T ss_dssp HHHHHHHHHHHHHHH-TCSTTSCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh-cCcccCCHHHHHHH-hCCChhHHHHHc
Confidence 345565555555554 56 56999999994 899988877653
No 402
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=30.51 E-value=62 Score=21.91 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=26.6
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQLGL 196 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~ 196 (245)
-|.++.||++. ++++..++.+.++.|. ..|+
T Consensus 38 ~~~~~~ela~~-l~is~stvs~~L~~L~-~~Gl 68 (106)
T 1r1u_A 38 SEASVGHISHQ-LNLSQSNVSHQLKLLK-SVHL 68 (106)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHH-HTTS
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHH-HCCC
Confidence 46899999995 8999999999999987 5554
No 403
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=30.36 E-value=1e+02 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
+.+.+..|++=+..+.-=...|+.+||+ .+||+..+|-+.|.
T Consensus 17 ~r~~Il~aa~~lf~~~G~~~~t~~~Ia~-~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 17 ARDLLLQTASNIMREGDVVDISLSELSL-RSGLNSALVKYYFG 58 (213)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHH-HHCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHH-HhCCChhhHhHhcC
Confidence 3455555555555453334799999999 58999888877654
No 404
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=30.14 E-value=28 Score=32.19 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCCCCCCCCCceeeeCCCCceEccC---Ccccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSE---CGLVLESHS 37 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~---CG~V~~e~~ 37 (245)
..||.||+ .++.....-...|++ |-.-+-+++
T Consensus 406 ~~CP~Cgs--~~~~~~~~~~~rC~n~~~Cpaq~~~~l 440 (586)
T 4glx_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESL 440 (586)
T ss_dssp SBCTTTCC--BEECCTTCSCCEESCGGGCHHHHHHHH
T ss_pred CcCCCCCC--chhhhhcccccEeCCCcCcHHHHHhHH
Confidence 57999997 355555555688975 877766665
No 405
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=30.07 E-value=1.1e+02 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=27.2
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 166 RTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
.+-++|++. ++++..++......+.+.|+..
T Consensus 158 ~s~~~Ia~~-l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 158 LMNKQIAGE-LGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred CcHHHHHHH-cCCCHHHHHHHHHHHHHHhCCC
Confidence 578999995 8999999999999999999864
No 406
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=29.98 E-value=76 Score=22.66 Aligned_cols=30 Identities=3% Similarity=0.141 Sum_probs=26.3
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+-+.++.+|++. ++++..++.+..+.|.+.
T Consensus 55 ~~~~t~~ela~~-l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 55 NDAMMITRLAKL-SLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp CSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 347999999995 999999999999999763
No 407
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.89 E-value=33 Score=23.07 Aligned_cols=28 Identities=21% Similarity=0.528 Sum_probs=17.6
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
..|..|+.. |..-.-.--|..||.|+=.
T Consensus 10 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC~ 37 (88)
T 1wfk_A 10 SRCYGCAVK----FTLFKKEYGCKNCGRAFCN 37 (88)
T ss_dssp SBCTTTCCB----CCSSSCEEECSSSCCEEET
T ss_pred CCCcCcCCc----ccCccccccCCCCCCEECh
Confidence 469999973 3333445667777776643
No 408
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=29.86 E-value=84 Score=22.05 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=24.2
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
.++.|||+. ++++..++.+..+.|.+
T Consensus 52 ~t~~eLa~~-l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 52 LTNSELARR-LNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 999999995 99999999999999975
No 409
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=29.65 E-value=11 Score=25.04 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=7.2
Q ss_pred ceEccCCcccc
Q 025983 23 DTVCSECGLVL 33 (245)
Q Consensus 23 ~~vC~~CG~V~ 33 (245)
.+.|.+||...
T Consensus 37 ~I~CnDC~~~s 47 (79)
T 2k2d_A 37 DILCNDCNGRS 47 (79)
T ss_dssp EEEESSSCCEE
T ss_pred EEECCCCCCCc
Confidence 35677777665
No 410
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=29.56 E-value=1.2e+02 Score=19.86 Aligned_cols=63 Identities=8% Similarity=-0.030 Sum_probs=40.2
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 239 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~ 239 (245)
+.+.++.||++. ++++..++.+..+.|.+ .|+ + .+|.+ +=...+.|.++=...+.++.....+
T Consensus 28 ~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~-~Gl-------v--~~~~d---~R~~~v~LT~~G~~~~~~~~~~~~~ 90 (95)
T 2qvo_A 28 GNDVYIQYIASK-VNSPHSYVWLIIKKFEE-AKM-------V--ECELE---GRTKIIRLTDKGQKIAQQIKSIIDI 90 (95)
T ss_dssp TCCEEHHHHHHH-SSSCHHHHHHHHHHHHH-TTS-------E--EEEEE---TTEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHH-HCcCHHHHHHHHHHHHH-CcC-------c--cCCCC---CCeEEEEEChhHHHHHHHHHHHHHH
Confidence 345999999995 99999999999998865 332 2 12222 1122355666666666665555443
No 411
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=29.50 E-value=1.5e+02 Score=20.94 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHH
Q 025983 177 GATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQ 235 (245)
Q Consensus 177 ~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~ 235 (245)
..+..+|......|...-. +...+...+|.++.+.+--+.++.+.+.+++.
T Consensus 40 ~Ltdeev~~Va~~L~~~~~--------i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa 90 (112)
T 2lky_A 40 RLTNDEIKAIAEDLEKRAH--------FDHIDIGVLITQMTDEMPREEDIERVRRHLAL 90 (112)
T ss_dssp TCCHHHHHHHHHHHHHHCC--------CSCCCSHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Confidence 3444555555555655422 45678889999999999999999999988864
No 412
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=29.46 E-value=30 Score=25.23 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.3
Q ss_pred CCCCCCCCCceeeeCCCCceEccCCcccc
Q 025983 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~ 33 (245)
.|..|+.. ....+|-.||.|-
T Consensus 36 ~C~~C~~~--------~~LwlCL~CG~vg 56 (129)
T 2g45_A 36 KCSKCDMR--------ENLWLNLTDGSIL 56 (129)
T ss_dssp CCSSSSCC--------SSEEEETTTCCEE
T ss_pred cCccccCc--------CceEEeccCCccc
Confidence 57777762 1367888888875
No 413
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=29.43 E-value=10 Score=21.66 Aligned_cols=15 Identities=20% Similarity=0.671 Sum_probs=11.2
Q ss_pred CCceEccCCcccccc
Q 025983 21 AGDTVCSECGLVLES 35 (245)
Q Consensus 21 ~G~~vC~~CG~V~~e 35 (245)
.....|..||..+..
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 345689999998864
No 414
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=29.32 E-value=32 Score=32.33 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=22.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccC---Cccccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSE---CGLVLESHSI 38 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~---CG~V~~e~~i 38 (245)
..||.||+ .++.....-.+.|.+ |-.-+-++++
T Consensus 406 ~~CP~Cgs--~l~~~~~~~~~rC~n~~~Cpaq~~~~l~ 441 (671)
T 2owo_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLK 441 (671)
T ss_dssp SBCTTTCC--BEEECTTCSCEEECCGGGCHHHHHHHHH
T ss_pred CCCCCCCC--EeEEecCCEEEECCCCCCCHHHHHHHHH
Confidence 57999998 355444445677993 8877766653
No 415
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=29.26 E-value=1.4e+02 Score=20.55 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q 025983 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l 194 (245)
..+-+|-+|+ -...|..|||.. +|++..++.+..++-.+.+
T Consensus 22 ~~~~~A~lyY-----v~g~tQ~eIA~~-lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 22 QTIEIARGVL-----VDGKPQATFATS-LGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp HHHHHHHHHH-----TTCCCHHHHHHH-HTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HcCCCHHHHHHH-HCCCHHHHHHHHHHHHHHH
Confidence 3444444443 255679999995 9999999999999888765
No 416
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=29.19 E-value=85 Score=22.81 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 150 LLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 150 iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+..|++=+..+ .| ...|+.+||+ .+||+..+|-+.|
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~-~agvs~~t~Y~~F 43 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVK-LSESSKGNLYYHF 43 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHH-HTTCCHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHH-HhCCCchhHHHhC
Confidence 33444433333 45 4689999999 4899988776653
No 417
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=29.07 E-value=15 Score=27.15 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=15.2
Q ss_pred CCCCCCCCCCceeee-CCCCceEccCCcccc
Q 025983 4 AFCSDCKKHTEVVFD-HSAGDTVCSECGLVL 33 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d-~~~G~~vC~~CG~V~ 33 (245)
..||+|++. +-+.. .......|..|+.-+
T Consensus 15 ~~c~~c~~~-~~~~~~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 15 LTCLACGQA-NKVPSDRLAAGPKCGICGAGL 44 (155)
T ss_dssp EECTTTCCE-EEEEGGGTTSCCBCTTTCCBS
T ss_pred EECcccccc-ccCCcccccCCCCCCcCCccc
Confidence 357777763 33332 223345666666544
No 418
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=29.03 E-value=85 Score=23.15 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+.+..|++=+..+ .|. ..|+.+||+ .+||+..+|-+.|
T Consensus 13 tr~~Il~aa~~l~~~-~G~~~~ti~~Ia~-~agvs~~t~Y~~F 53 (189)
T 3vp5_A 13 KRNRVYDACLNEFQT-HSFHEAKIMHIVK-ALDIPRGSFYQYF 53 (189)
T ss_dssp HHHHHHHHHHHHHHH-SCTTTCCHHHHHH-HHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-CCcccccHHHHHH-HhCCChHHHHHHC
Confidence 345566666555544 564 789999999 5899988776653
No 419
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=29.02 E-value=1.2e+02 Score=24.15 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=27.0
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
..+.+.++.||++ .++++..++.+..+.|.+
T Consensus 19 ~~~~~~~~~ela~-~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 19 KNPGDVSVSEIAE-KFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp HCSSCBCHHHHHH-HTTCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 3556899999999 599999999999998876
No 420
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=28.93 E-value=49 Score=23.61 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccC----------Cccc---cCCCCHH---hHHHHHhhhcCCCHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG----------QSVE---MGTIHAG---DFMRRFCSNLGMNNQA 226 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~----------~~~~---~~~~~p~---~~i~r~~~~L~l~~~v 226 (245)
+.| ++..+.+ ..|.+..+|..+++.|. .++++-. ..+. -.++++. .-+..+...|+.+...
T Consensus 32 ~~~-nvp~L~~-~TGmPRRTiQd~I~aL~-elgI~~~FvQ~G~R~n~GyY~I~dWG~idk~Wv~~~~~~i~~~L~~~~~~ 108 (117)
T 3ke2_A 32 ARH-NLLSLGK-LTGMPRRTLQDAIASFA-DIGIEVEFVQDGERHNAGYYRIRTWGPISSAWMDTHVDEVKSLLGVDDAV 108 (117)
T ss_dssp SCC-CHHHHHH-HHCCCHHHHHHHHHTGG-GGTCEEEEECCTTCCSCCEEEEEECTTBCHHHHHHHHHHHHHHHTCCCHH
T ss_pred CCC-CHHHHHH-HHCCCHhHHHHHHHHhh-hCCeEEEEEeccccCCCccEEEeecCccCHHHHHHHHHHHHHHhCCCCcc
Confidence 566 9999999 49999999999999998 7776531 1111 1234543 5667788888888766
Q ss_pred HHHH
Q 025983 227 VKAA 230 (245)
Q Consensus 227 ~~~A 230 (245)
..++
T Consensus 109 ~~~~ 112 (117)
T 3ke2_A 109 GQAT 112 (117)
T ss_dssp HHC-
T ss_pred chhh
Confidence 5544
No 421
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=28.92 E-value=59 Score=25.41 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
.+-+.+..|||+. ++++..++.+..++|.+.
T Consensus 17 ~~~~~~~~~lA~~-l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 17 RHNKITNKEIAQL-MQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp SCSCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 5678999999994 999999999999999763
No 422
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=28.74 E-value=71 Score=23.40 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.4
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+.++.||++. ++++..++.+.++.|.+.
T Consensus 59 ~~t~~eLa~~-l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 59 PINLATLATL-LGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999763
No 423
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=28.72 E-value=40 Score=27.84 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=19.0
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.|++|||+. +|||..|+.++++
T Consensus 1 ~ti~diA~~-agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKR-ANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHH
T ss_pred CCHHHHHHH-HCCCHHHHHHHHc
Confidence 379999995 8999999998865
No 424
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=28.58 E-value=28 Score=19.62 Aligned_cols=22 Identities=9% Similarity=0.003 Sum_probs=18.6
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.+..+||. .+|++..+|.+.++
T Consensus 22 ~s~~~ia~-~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAI-IFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHH-TTSCCHHHHHHHSC
T ss_pred CCHHHHHH-HHCCCHHHHHHHHH
Confidence 78999999 59999999977654
No 425
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=28.56 E-value=23 Score=24.43 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=17.6
Q ss_pred CCCCCCCCCCceeeeC-CCCc--eEccCCcccc
Q 025983 4 AFCSDCKKHTEVVFDH-SAGD--TVCSECGLVL 33 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~-~~G~--~vC~~CG~V~ 33 (245)
..||.|+.++.+-+-. ++|. -+|..||.++
T Consensus 64 lv~p~~~k~tRvg~~~~~dg~kvR~~kk~g~~i 96 (96)
T 2ftc_N 64 LVDPMDRKPTEIEWRFTEAGERVRVSTRSGRII 96 (96)
T ss_pred EEeCcCCCceEEEEEEccCCcEEEEEeccCCCC
Confidence 4577887655554433 3454 5677777653
No 426
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=28.56 E-value=55 Score=23.88 Aligned_cols=30 Identities=3% Similarity=0.018 Sum_probs=21.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l 194 (245)
...+.+|||.. +|+++.++...+.+-++.|
T Consensus 108 ~g~s~~EIA~~-lgis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 108 EGFSPEDAAYL-IEVDTSEVETLVTEALAEI 137 (157)
T ss_dssp SCCCHHHHHHT-TTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHHHHHHHH
Confidence 35789999995 9999988876555444443
No 427
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.43 E-value=17 Score=25.39 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=6.3
Q ss_pred CCCCCCCC
Q 025983 4 AFCSDCKK 11 (245)
Q Consensus 4 ~~Cp~Cg~ 11 (245)
..||.||+
T Consensus 48 ~~CPvCgs 55 (112)
T 1l8d_A 48 GKCPVCGR 55 (112)
T ss_dssp EECTTTCC
T ss_pred CCCCCCCC
Confidence 35999987
No 428
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=28.34 E-value=1.1e+02 Score=22.31 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=20.5
Q ss_pred hCCC-CcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 161 QEDK-PRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 161 ~~~~-~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
..|. ..|+.|||+ .+||++.+|-+.|.
T Consensus 18 ~~G~~~~s~~~IA~-~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 18 EKGYEATSVQDLAQ-ALGLSKAALYHHFG 45 (190)
T ss_dssp HHCSTTCCHHHHHH-HHTCCHHHHHHHHS
T ss_pred HhCcccCCHHHHHH-HhCCCHHHHHHHcC
Confidence 3464 578999999 58999888876643
No 429
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=28.29 E-value=1.6e+02 Score=20.79 Aligned_cols=62 Identities=8% Similarity=-0.008 Sum_probs=38.2
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCHHHHHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQK 236 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~ 236 (245)
.|..+||+ .++++..++.++++.|.+.==+. . ..++.+- .+..+...|++-..+++.-+.+.
T Consensus 52 ps~~~LA~-~l~~s~~~V~~~l~~Le~kGlI~------~-~~~~~~~-g~~~~~Ydl~pl~~kL~~~~~~~ 113 (128)
T 2vn2_A 52 PTPAELAE-RMTVSAAECMEMVRRLLQKGMIA------I-EEHTDEQ-GIRNEKYTLEPLWEKLVHHLYTQ 113 (128)
T ss_dssp CCHHHHHH-TSSSCHHHHHHHHHHHHHTTSSE------E-CC-----------CEECHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHCcCHHHHHHHHHHHHHCCCEE------E-EeEECCC-CcEEEEEehHHHHHHHHHHHHHH
Confidence 79999999 59999999999999987632121 1 1122222 56667788888777777665443
No 430
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=27.95 E-value=22 Score=25.98 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q 025983 3 DAFCSDCKKH 12 (245)
Q Consensus 3 ~~~Cp~Cg~~ 12 (245)
|+.||.||..
T Consensus 1 ~~~CP~Cg~~ 10 (130)
T 2hu9_A 1 MMRCPECSTE 10 (130)
T ss_dssp CCBCTTTCCB
T ss_pred CCcCCCCCCc
Confidence 5679999974
No 431
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=27.94 E-value=43 Score=19.38 Aligned_cols=30 Identities=20% Similarity=0.681 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCceeeeCCCCceEccCCcccccc
Q 025983 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (245)
Q Consensus 3 ~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e 35 (245)
...|-.|+.. ++-...--+.|.+||.++-.
T Consensus 11 pt~C~~C~~~---l~g~~~qg~~C~~C~~~~H~ 40 (50)
T 1ptq_A 11 PTFCDHCGSL---LWGLVKQGLKCEDCGMNVHH 40 (50)
T ss_dssp CCBCTTTCCB---CCSSSSCEEEETTTCCEECH
T ss_pred CCCcCCCCce---eeccCCccCEeCCCCCeECH
Confidence 3579999862 33212223779999988743
No 432
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=27.69 E-value=1.3e+02 Score=20.34 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=30.1
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhcCCCH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNN 224 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 224 (245)
....|+.++|.. +|++..+|.+..+ |.. .| ..+.+.+++..|+++.
T Consensus 47 ~~glsq~elA~~-~gis~~~is~~E~------G~~------~p---~~~~l~~ia~~l~v~~ 92 (107)
T 2jvl_A 47 EPTMTQAELGKE-IGETAATVASYER------GTA------TP---DQNILSKMERVLNVKL 92 (107)
T ss_dssp SSCCCHHHHHHH-HTCCHHHHHHHTT------TCS------CC---CHHHHHHHHHTTTCBS
T ss_pred HcCCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCcCH
Confidence 446789999994 8999887765422 111 11 2466778888887763
No 433
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.63 E-value=97 Score=22.27 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHH
Q 025983 148 DALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+..|++=+-.+ .|. ..|+.+||+. +||+..+|-+.|
T Consensus 11 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F 49 (188)
T 3qkx_A 11 EQIFSATDRLMAR-EGLNQLSMLKLAKE-ANVAAGTIYLYF 49 (188)
T ss_dssp HHHHHHHHHHHHH-SCSTTCCHHHHHHH-HTCCHHHHHHHS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHH-hCCCcchHHHHc
Confidence 3444444444433 564 5999999994 899988877664
No 434
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=27.44 E-value=50 Score=20.55 Aligned_cols=31 Identities=19% Similarity=0.705 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~ 37 (245)
..|-.|+. +++-...--+.|.+|+.++=..-
T Consensus 24 t~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~C 54 (65)
T 2enz_A 24 TFCEHCGT---LLWGLARQGLKCDACGMNVHHRC 54 (65)
T ss_dssp CBCSSSCC---BCCCSSSCSEEESSSCCEECTTT
T ss_pred cCchhcCh---hheecCCcccccCCCCCccCHhH
Confidence 57999986 23322223367999998885444
No 435
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=27.33 E-value=37 Score=21.16 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.5
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.+.+|+|+. +||+..+|.+..+
T Consensus 3 lt~~e~a~~-LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 3 VNKKQLADI-FGASIRTIQNWQE 24 (68)
T ss_dssp EEHHHHHHH-TTCCHHHHHHHTT
T ss_pred cCHHHHHHH-HCcCHHHHHHHHH
Confidence 578999995 9999999977654
No 436
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.28 E-value=70 Score=22.80 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=25.8
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-+.++.++++. ++++..++.+.++.|.+.
T Consensus 50 ~~~t~~ela~~-l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 50 GSLKVSEIAER-MEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp SEEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 37899999995 999999999999999764
No 437
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=27.24 E-value=97 Score=22.85 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+...+..|++=+..+ .| ...|+.+|++ .+||+..+|-+.|
T Consensus 18 ~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~-~agvs~~t~Y~~F 58 (207)
T 2rae_A 18 TQDRISTVGIELFTE-QGFDATSVDEVAE-ASGIARRTLFRYF 58 (207)
T ss_dssp HHHHHHHHHHHHHHH-HCTTTSCHHHHHH-HTTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-cCcccCCHHHHHH-HhCCCcchHhhhC
Confidence 345565555555544 45 4699999999 5899988887664
No 438
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=27.19 E-value=62 Score=20.01 Aligned_cols=23 Identities=22% Similarity=-0.006 Sum_probs=19.2
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
-+++.|+++. +|++..+|.+..+
T Consensus 10 ~l~~~eva~~-lgvsrstiy~~~~ 32 (66)
T 1z4h_A 10 LVDLKFIMAD-TGFGKTFIYDRIK 32 (66)
T ss_dssp EECHHHHHHH-HSSCHHHHHHHHH
T ss_pred ccCHHHHHHH-HCcCHHHHHHHHH
Confidence 4789999995 9999999976655
No 439
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=27.14 E-value=72 Score=23.11 Aligned_cols=27 Identities=0% Similarity=-0.033 Sum_probs=25.0
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+.++.||++. ++++..++.+.++.|.+
T Consensus 60 ~~t~~eLa~~-l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 60 NLSNAKLAER-SFIKPQSANKILQDLLA 86 (162)
T ss_dssp TCCHHHHHHH-HTSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 8999999995 99999999999999975
No 440
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=27.14 E-value=61 Score=23.71 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=26.2
Q ss_pred HHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 155 LYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 155 lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+++.....+-+.++.||++. ++++..++.+.++.|.+
T Consensus 52 L~~l~~~~~~~~t~~eLa~~-l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 52 LRLLRSVHPEGMATLQIADR-LISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHTTSCEEHHHHHHH-C---CTHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcCHHHHHHH-HCCChhhHHHHHHHHHH
Confidence 33333333578999999995 99999999999999975
No 441
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=27.13 E-value=1.4e+02 Score=19.83 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
-...|.-||-+.-..+ +.+++++.+ +++.+..++..++--|.++=++.
T Consensus 6 IG~nAG~VW~~L~~~~-~~s~~el~k-~t~l~d~el~lAIGWLaREdKI~ 53 (82)
T 2l02_A 6 VGANAGKVWHALNEAD-GISIPELAR-KVNLSVESTALAVGWLARENKVV 53 (82)
T ss_dssp HHHHHHHHHHHHHHCC-SBCHHHHHH-HHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHhccC-CCCHHHHHH-HhCCCHHHHHHHHHHHhccCcee
Confidence 3567888888877765 899999999 59999999999999998865554
No 442
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=27.05 E-value=1.5e+02 Score=20.02 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=12.9
Q ss_pred CcCHHHHHHHHhCCCHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRA 186 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~ 186 (245)
..|+.++|.. +|++..+|.+.
T Consensus 22 glsq~~lA~~-~gis~~~i~~~ 42 (114)
T 3op9_A 22 GLKNHQIAEL-LNVQTRTVAYY 42 (114)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHH
Confidence 3466666663 66666666654
No 443
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=27.05 E-value=13 Score=27.94 Aligned_cols=29 Identities=10% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHH
Q 025983 162 EDKPRTVKEICSVANGATKKEIGRAKEYIV 191 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v~~~~i~~~~~~l~ 191 (245)
...|.|..+||+. +|++..++.|..++|.
T Consensus 165 ~~~~~t~~~iA~~-lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 165 FIQRVPQYLLASY-LGFTPEYLSEIRKKYI 193 (194)
T ss_dssp ------------------------------
T ss_pred HHHHCCHHHHHHH-hCCCHHHHHHHHHhhc
Confidence 3468899999995 9999999999988774
No 444
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=27.03 E-value=1e+02 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=25.6
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
-+.+..++++. ++++..++.+..+.|.+.
T Consensus 47 ~~~~~~~la~~-l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKV-LSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCChHHHHHHHHHHHHC
Confidence 37899999995 999999999999999764
No 445
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=26.97 E-value=89 Score=20.31 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=34.2
Q ss_pred hCCCHHHHHHHHHHHHHHhCCccCCccccCCCCHHhHHHHHhhhc-CCC-HHHHHHHHHHHHHhhh
Q 025983 176 NGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL-GMN-NQAVKAAQEAVQKSEE 239 (245)
Q Consensus 176 ~~v~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L-~l~-~~v~~~A~~i~~~~~~ 239 (245)
.+|++.+|++.++ + .+....+++.+|=.++ +++ ++.++.-..|+++...
T Consensus 8 ~~iTEe~VrryL~--r-------------kPmTt~dLl~KFK~r~~~~~~~e~v~~~a~ILkki~p 58 (73)
T 1i27_A 8 VQVTEDAVRRYLT--R-------------KPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNP 58 (73)
T ss_dssp SSCCHHHHHHHHH--H-------------SCBCHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHH--c-------------CCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCH
Confidence 4788888887765 1 2456889999999886 555 5566666677776543
No 446
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=26.96 E-value=1.4e+02 Score=20.77 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=24.7
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+.++.|+++. ++++..++.+..+.|.+
T Consensus 45 ~~t~~eLa~~-l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 45 SRTQKHIGEK-WSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp SBCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 5999999995 99999999999999976
No 447
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=26.93 E-value=1.2e+02 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+.+..|++=+-.+ .|. ..|+.+||+ .+||++.+|-+.|
T Consensus 8 ~r~~Il~aA~~lf~~-~G~~~ts~~~IA~-~aGvs~gtlY~~F 48 (197)
T 2gen_A 8 RKDEILQAALACFSE-HGVDATTIEMIRD-RSGASIGSLYHHF 48 (197)
T ss_dssp CHHHHHHHHHHHHHH-HCTTTCCHHHHHH-HHCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-cCcccCCHHHHHH-HHCCChHHHHHHC
Confidence 344454444444444 454 689999999 5899987776653
No 448
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=26.88 E-value=1.3e+02 Score=21.90 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 147 QDALLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 147 ~~~iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+..|..|++=+-.+ .| ...|+.+||+ .+||+..+|-+.|
T Consensus 9 ~~~Il~aA~~lf~~-~G~~~~t~~~IA~-~agvs~~tlY~~F 48 (192)
T 2zcm_A 9 KDKIIDNAITLFSE-KGYDGTTLDDISK-SVNIKKASLYYHY 48 (192)
T ss_dssp HHHHHHHHHHHHHH-HCTTTCCHHHHHH-HTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHH-HhCCChHHHHHHC
Confidence 34444444444434 45 4689999999 4899988777653
No 449
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=26.79 E-value=1.3e+02 Score=21.64 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=26.6
Q ss_pred hCCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 161 QEDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 161 ~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
..+-+.+..|+|+. ++++..++.+..+.|.+
T Consensus 42 ~~~~~~~~~eLa~~-l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 42 RLPPEQSQIQLAKA-IGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp HSCTTSCHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHH-HCcCHHHHHHHHHHHHh
Confidence 34567788999995 99999999999999976
No 450
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=26.65 E-value=1e+02 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=26.2
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVKQ 193 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~~ 193 (245)
+-+.+..||++. ++++..++.+.++.|.+.
T Consensus 59 ~~~~t~~ela~~-l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 59 TDERSVSEIGER-LYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp SCSEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-hCCCcccHHHHHHHHHHC
Confidence 347999999995 999999999999999763
No 451
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=26.64 E-value=1.1e+02 Score=22.63 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 147 QDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 147 ~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
...+..|++=+..+.-=...|+.+||+ .+||+..+|-+.|
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~IA~-~agvs~~t~Y~~F 55 (212)
T 3knw_A 16 RQHILDSGFHLVLRKGFVGVGLQEILK-TSGVPKGSFYHYF 55 (212)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHH-HHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHH-HhCCChHHHHHHC
Confidence 345555555555453335699999999 4899988776653
No 452
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=26.57 E-value=73 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=25.0
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+.++.||++. ++++..++.+..+.|.+
T Consensus 67 ~~t~~eLa~~-l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 67 ELTVGQLATL-GVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp EEEHHHHHHH-TTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 8999999995 99999999999999976
No 453
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.34 E-value=37 Score=27.04 Aligned_cols=30 Identities=20% Similarity=0.593 Sum_probs=21.0
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCcccccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~e~~ 37 (245)
..|..|+.. |..-.-.--|..||.|+=...
T Consensus 165 ~~C~~C~~~----F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 165 EECHRCRVQ----FGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp SBCTTTCCB----CBTTBCCEECTTTCCEECTTT
T ss_pred CCCcCcCCC----CCccccccccCCCcCEeChhh
Confidence 479999973 334455678999998886544
No 454
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=26.33 E-value=40 Score=27.72 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=19.2
Q ss_pred cCHHHHHHHHhCCCHHHHHHHHH
Q 025983 166 RTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 166 ~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.|++|||+. +|||..|+.++++
T Consensus 3 ~ti~dvA~~-agVS~~TVSrvln 24 (332)
T 2hsg_A 3 VTIYDVARE-ASVSMATVSRVVN 24 (332)
T ss_dssp CCHHHHHHH-TTSCHHHHHHHHT
T ss_pred CCHHHHHHH-hCCCHHHHHHHHc
Confidence 589999995 8999999998865
No 455
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=26.29 E-value=19 Score=31.31 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCCCCCCCCceeeeCCCCceEccCCccccc
Q 025983 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V~~ 34 (245)
..|-.||+...--....-|-.+|.+|.-|..
T Consensus 35 ~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr 65 (386)
T 3lju_X 35 ARCADCGAPDPDWASYTLGVFICLSCSGIHR 65 (386)
T ss_dssp SBCTTTCCBSCCEEETTTTEEECHHHHHHHH
T ss_pred CcCccCCCCCCCeEEecccEEEhhhhchHhh
Confidence 4699999843223456789999999998875
No 456
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=26.26 E-value=1.3e+02 Score=24.93 Aligned_cols=27 Identities=15% Similarity=0.120 Sum_probs=23.4
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
|.|..|||.. +++++..+.+..+.|..
T Consensus 56 ~~t~~elA~~-~~~~~~~l~rlLr~L~~ 82 (352)
T 3mcz_A 56 GRTPAEVAAS-FGMVEGKAAILLHALAA 82 (352)
T ss_dssp CBCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-hCcChHHHHHHHHHHHH
Confidence 9999999995 99999998888877653
No 457
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.26 E-value=1.1e+02 Score=22.19 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 148 DALLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+..|++=+..+ .| ...|+.+|++ .+||+..+|-+.|
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~-~agvs~~t~Y~~F 55 (203)
T 3f1b_A 17 QQMLDAAVDVFSD-RGFHETSMDAIAA-KAEISKPMLYLYY 55 (203)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHH-HTTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHH-cCcccccHHHHHH-HhCCchHHHHHHh
Confidence 3455555544444 45 4799999999 5899988877653
No 458
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=26.24 E-value=82 Score=22.06 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=26.6
Q ss_pred HhCCCCcCHHHHHHHHh--CCCHHHHHHHHHHHHH
Q 025983 160 RQEDKPRTVKEICSVAN--GATKKEIGRAKEYIVK 192 (245)
Q Consensus 160 R~~~~~~tl~dia~~~~--~v~~~~i~~~~~~l~~ 192 (245)
+.++ |.|..+||. .+ +++...+++..+.|.+
T Consensus 23 ~~~g-~~s~~eLA~-~l~~giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 23 HEEG-NGSPKELED-RDEIRISKSSVSRRLKKLAD 55 (111)
T ss_dssp HHHS-CBCHHHHHT-STTCCSCHHHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHH-HHhcCCCHHHHHHHHHHHHH
Confidence 3344 899999999 59 9999999999999976
No 459
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=26.17 E-value=26 Score=27.97 Aligned_cols=27 Identities=15% Similarity=0.333 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCceeeeCCCCceEccCCccc
Q 025983 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (245)
Q Consensus 1 ~~~~~Cp~Cg~~~~iv~d~~~G~~vC~~CG~V 32 (245)
|. ..||.|+. .-.. ..+...|.+|..+
T Consensus 1 m~-~~Cp~C~~-~~~~---~~~~~~C~~~~~~ 27 (269)
T 1p91_A 1 MS-FSCPLCHQ-PLSR---EKNSYICPQRHQF 27 (269)
T ss_dssp -C-BBCTTTCC-BCEE---ETTEEECTTCCEE
T ss_pred Cc-ccCCCCCc-ccee---CCCEEECCCCCcC
Confidence 44 57999997 3222 3467899998754
No 460
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=26.16 E-value=54 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.7
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 165 PRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
-.|+.|+|+. ++|+..+|.|..+
T Consensus 39 ~~si~elA~~-~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 39 ESTVNEISAL-ANSSDAAVIRLCX 61 (111)
T ss_dssp TCCHHHHHHH-TTCCHHHHHHHHH
T ss_pred hcCHHHHHHH-HCCCHHHHHHHHH
Confidence 3689999994 8999999987643
No 461
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.14 E-value=76 Score=24.38 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=22.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVKQL 194 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~~l 194 (245)
...++.|||.. +|++..++.+.+.+..+.|
T Consensus 202 ~g~s~~EIA~~-lgis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 202 EELPAKEVAKI-LETSVSRVSQLKAKALERL 231 (239)
T ss_dssp SCCCHHHHHHH-TTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHHHHHHHH
Confidence 46899999995 9999999886665544443
No 462
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=26.11 E-value=30 Score=26.51 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=0.0
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
..|.|..+||+. +|++..++.|..++|.+
T Consensus 162 ~~~~t~~~lA~~-lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 162 TLPVTLEELSRL-FGCARPALSRVFQELER 190 (213)
T ss_dssp ------------------------------
T ss_pred cCCCCHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 467899999995 99999999999999875
No 463
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=26.11 E-value=1.1e+02 Score=22.33 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHHhhCCCCCCCCHHHHHHHH-HHHHHHhCCCCcCHHHHHH
Q 025983 110 KTIATMSDRLGLVA-TIKDRANEIYKKVEDQKSSRGRNQDALLAAC-LYIACRQEDKPRTVKEICS 173 (245)
Q Consensus 110 ~~I~~~~~~L~Lp~-~v~~~A~~i~~~~~~~~~~~gr~~~~iaAA~-lY~acR~~~~~~tl~dia~ 173 (245)
..++.++++|++.+ ...+.=..+.+.+...++..||=...++-+. +-+-|...+.|..+..|++
T Consensus 48 ~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinWGRIValf~F~g~la~~~~~~~~~~~v~~i~~ 113 (144)
T 2w3l_A 48 RDFAEMSSGLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIAL 113 (144)
T ss_dssp HHHHHHHTTCCCCTTTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45788899998843 3334444555555556666676222221111 1122334456655666655
No 464
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=26.04 E-value=1.6e+02 Score=20.14 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=51.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHHhC-CCCcCHHHHHHHHhCC-CHHHHHHHHH
Q 025983 112 IATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDA-LLAACLYIACRQE-DKPRTVKEICSVANGA-TKKEIGRAKE 188 (245)
Q Consensus 112 I~~~~~~L~Lp~~v~~~A~~i~~~~~~~~~~~gr~~~~-iaAA~lY~acR~~-~~~~tl~dia~~~~~v-~~~~i~~~~~ 188 (245)
|..+|..++++.....+ +|+. . |.++.. +--.=+-.|+++. ....++.|||.. +|- +...+.+.|+
T Consensus 26 ~~~lA~~~~~S~~~l~r---~fk~------~-G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~-~Gf~~~s~F~r~Fk 94 (120)
T 3mkl_A 26 LARIASELLMSPSLLKK---KLRE------E-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVS-CGYHSVSYFIYVFR 94 (120)
T ss_dssp HHHHHHHTTCCHHHHHH---HHHH------T-TCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHH-TTCSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHH------c-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-HCCCCHHHHHHHHH
Confidence 78899999999854432 4444 2 444433 3333344445444 356899999994 775 4677777766
Q ss_pred HHHHHhCCccCCccccCCCCHHhHHHHHhhhcC
Q 025983 189 YIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLG 221 (245)
Q Consensus 189 ~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~ 221 (245)
+..|+ .|..|-.++...+.
T Consensus 95 ---~~~G~-----------tP~~yr~~~~~~~~ 113 (120)
T 3mkl_A 95 ---NYYGM-----------TPTEYQERSAQRLS 113 (120)
T ss_dssp ---HHHSS-----------CHHHHHHHC-----
T ss_pred ---HHHCc-----------CHHHHHHHHHhccC
Confidence 55564 48888877766554
No 465
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=25.94 E-value=1.5e+02 Score=19.84 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=25.8
Q ss_pred CCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 163 DKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
+..++.+||+.. ++++..++.++.+.|.+
T Consensus 34 ~~gi~qkeLa~~-~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 34 NKGIWSRDVRYK-SNLPLTEINKILKNLES 62 (91)
T ss_dssp TTCEEHHHHHHH-TTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 457999999995 99999999999999965
No 466
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=25.92 E-value=25 Score=19.54 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=16.0
Q ss_pred CCCCCCCCCceeeeC-CCCceEccCCcc
Q 025983 5 FCSDCKKHTEVVFDH-SAGDTVCSECGL 31 (245)
Q Consensus 5 ~Cp~Cg~~~~iv~d~-~~G~~vC~~CG~ 31 (245)
.|-.||....+..|- ......|-.||.
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~ 29 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPRQEGCWNCGS 29 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCCCSSCTTTCC
T ss_pred eeeccCCCCcccccCCCCCCCccccCCC
Confidence 477888654444442 223567888875
No 467
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=25.83 E-value=77 Score=23.26 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 147 QDALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 147 ~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.+.+..|++=+..+ .|. ..|+.+||+ .+||+..+|-+.|.
T Consensus 9 r~~Il~aA~~l~~~-~G~~~~t~~~Ia~-~agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 9 EQRLKRAALELYSE-HGYDNVTVTDIAE-RAGLTRRSYFRYFP 49 (195)
T ss_dssp HHHHHHHHHHHHHH-SCGGGCCHHHHHH-HTTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHh-cCccccCHHHHHH-HhCCCHHHHHHHcC
Confidence 44555555544433 565 599999999 58999999887754
No 468
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.64 E-value=79 Score=23.11 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
+.+.+..|++=+..+ .|. ..|+.+||+. +||+..+|-+.|.
T Consensus 9 ~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~-agvs~~t~Y~~F~ 50 (206)
T 3dew_A 9 CRSRLMEVATELFAQ-KGFYGVSIRELAQA-AGASISMISYHFG 50 (206)
T ss_dssp HHHHHHHHHHHHHHH-HCGGGCCHHHHHHH-HTCCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhc-CCcccCcHHHHHHH-hCCCHHHHHHHcC
Confidence 344555555555444 564 7999999994 8999998887654
No 469
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.60 E-value=88 Score=22.76 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHH
Q 025983 145 RNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 186 (245)
Q Consensus 145 r~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~ 186 (245)
.+.+.+..|++=+..+.-=...|+.+|++ .+||++.+|-+.
T Consensus 11 ~~r~~il~aa~~lf~~~G~~~~tv~~Ia~-~agvs~~t~Y~~ 51 (196)
T 3he0_A 11 DKRDQILAAAEQLIAESGFQGLSMQKLAN-EAGVAAGTIYRY 51 (196)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHHHH-HHTSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHH-HhCCCcchHHHh
Confidence 34555665555555554334699999999 589998776543
No 470
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=25.57 E-value=1e+02 Score=23.29 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHhC---CCHHHHHHHHHHHHHHhCCc
Q 025983 154 CLYIACRQEDKPRTVKEICSVANG---ATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 154 ~lY~acR~~~~~~tl~dia~~~~~---v~~~~i~~~~~~l~~~l~~~ 197 (245)
.+.+-++..+...+.++|++. +. ++..++....+.|++.|+..
T Consensus 153 vl~~l~~~~~~~~s~~~Ia~~-l~~~~~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 153 ILLFLAENAGKVVTREKLLET-FWEDPVSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp HHHHHHHTTTSCEEHHHHHHH-HCSSCCCTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHCCCceEcHHHHHHH-HhCCCCCcchHHHHHHHHHHHHhcc
Confidence 344455566788999999995 88 99999999999999999864
No 471
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=25.50 E-value=22 Score=23.37 Aligned_cols=31 Identities=23% Similarity=0.578 Sum_probs=20.0
Q ss_pred CCCCCCCCCCce--eeeCC-CCceEccCCccccc
Q 025983 4 AFCSDCKKHTEV--VFDHS-AGDTVCSECGLVLE 34 (245)
Q Consensus 4 ~~Cp~Cg~~~~i--v~d~~-~G~~vC~~CG~V~~ 34 (245)
..||-|.-.+.+ -+|+. .-.-.|..||.--.
T Consensus 18 WVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 18 WVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp EECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred eECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 579999942111 34444 45578999998754
No 472
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.48 E-value=18 Score=24.20 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q 025983 3 DAFCSDCKK 11 (245)
Q Consensus 3 ~~~Cp~Cg~ 11 (245)
|.+||-||+
T Consensus 8 ~~~~PlCG~ 16 (95)
T 2k5c_A 8 MAKCPICGS 16 (95)
T ss_dssp CEECSSSCC
T ss_pred cccCCcCCC
Confidence 457888886
No 473
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=25.30 E-value=68 Score=22.99 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=24.7
Q ss_pred HHHhCCCCcCHHHHHHHHhCCCHHHHHHHHHHHH
Q 025983 158 ACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 191 (245)
Q Consensus 158 acR~~~~~~tl~dia~~~~~v~~~~i~~~~~~l~ 191 (245)
+.++.....|.+||++. +|+|..+|.|.-+.|.
T Consensus 68 V~klL~~G~syreIA~~-~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 68 VAKMIKQGYTYATIEQE-SGASTATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHTCCHHHHHHH-HCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHH-HCCCHHHHHHHHHHHh
Confidence 33333344899999995 9999999999866553
No 474
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=25.29 E-value=72 Score=22.08 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=19.9
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEY 189 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~ 189 (245)
.-.|+.|+|+. +++++.+|-|..++
T Consensus 34 ~~~si~elA~~-~~vS~aTv~Rf~kk 58 (107)
T 3iwf_A 34 VNMTSQEIANQ-LETSSTSIIRLSKK 58 (107)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHHH
T ss_pred HHCCHHHHHHH-HCCCHHHHHHHHHH
Confidence 34789999994 89999999877443
No 475
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=25.19 E-value=1.1e+02 Score=21.30 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=25.5
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
-|.++.||++. ++++..++.+..+.|.+
T Consensus 50 ~~~t~~eLa~~-l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 50 EPISQKEIALW-TKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHH-HCCCHhhHHHHHHHHHH
Confidence 57899999995 99999999999999975
No 476
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=25.16 E-value=29 Score=20.06 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=12.7
Q ss_pred eCCCCceEccCCccccc
Q 025983 18 DHSAGDTVCSECGLVLE 34 (245)
Q Consensus 18 d~~~G~~vC~~CG~V~~ 34 (245)
|.....-||..||.=+.
T Consensus 12 e~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 12 DKPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCCCCEEECTTTCCEEE
T ss_pred CccccchhhcccCCcch
Confidence 34566789999998664
No 477
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.03 E-value=1e+02 Score=22.79 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+.+..|++=+-.+ .|. ..|+.+||+ .+||+..+|-+.|
T Consensus 12 ~r~~Il~aA~~lf~~-~G~~~~ti~~Ia~-~agvs~~t~Y~~F 52 (216)
T 3f0c_A 12 KLELIINAAQKRFAH-YGLCKTTMNEIAS-DVGMGKASLYYYF 52 (216)
T ss_dssp HHHHHHHHHHHHHHH-HCSSSCCHHHHHH-HHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-cCCCcCCHHHHHH-HhCCCHHHHHHHc
Confidence 344555555444434 564 699999999 4899988777653
No 478
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=25.03 E-value=1.1e+02 Score=22.25 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+.+..|++=+-.+ .|...|+.+|++ .+||+..+|-+.|
T Consensus 10 ~r~~Il~aA~~lf~~-~G~~~t~~~IA~-~aGvs~~tly~~F 49 (190)
T 3jsj_A 10 PRERLLEAAAALTYR-DGVGIGVEALCK-AAGVSKRSMYQLF 49 (190)
T ss_dssp HHHHHHHHHHHHHHH-HCTTCCHHHHHH-HHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-hCccccHHHHHH-HhCCCHHHHHHHc
Confidence 345555555555444 343399999999 4899988776653
No 479
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=24.77 E-value=1.5e+02 Score=22.46 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=27.3
Q ss_pred CcCHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Q 025983 165 PRTVKEICSVANGATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 165 ~~tl~dia~~~~~v~~~~i~~~~~~l~~~l~~~ 197 (245)
..+.++|++. ++++..++....+.|++.|+..
T Consensus 174 g~s~~~Ia~~-l~~s~~Tv~~~i~~l~~KL~~~ 205 (225)
T 3klo_A 174 GASNIEIADK-LFVSENTVKTHLHNVFKKINAK 205 (225)
T ss_dssp TCCHHHHHHH-TTCCHHHHHHHHHHHTTTSCCS
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHHHHHHHhCCC
Confidence 4788999994 8999999999999998888864
No 480
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=24.76 E-value=1e+02 Score=23.52 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
+.+.|..|++=+..+.-=...|+++|++. +||+..+|-+.|.
T Consensus 3 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~-aGvs~~tlY~hf~ 44 (209)
T 3bqy_A 3 DRARTVQTALDLLNESGLDTLTMRRLAQA-MDVQAGALYRYFA 44 (209)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHH-HTSCHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCCcccCCHHHHHHH-hCCCcchHHhhcC
Confidence 45566667766665543346899999994 9999998887654
No 481
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.69 E-value=73 Score=22.31 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=28.2
Q ss_pred CCCCcCHHHHHHHHhCC---CHHH-HHHHHHHHHHHhCC
Q 025983 162 EDKPRTVKEICSVANGA---TKKE-IGRAKEYIVKQLGL 196 (245)
Q Consensus 162 ~~~~~tl~dia~~~~~v---~~~~-i~~~~~~l~~~l~~ 196 (245)
.+.|.|..||+. .+++ ++++ |-.-+..|.+.+.-
T Consensus 21 ~~~plta~ei~~-~l~i~~~~~ke~Vy~hLeHIaksl~r 58 (105)
T 2gmg_A 21 LEGDYSPSELAR-ILDMRGKGSKKVILEDLKVISKIAKR 58 (105)
T ss_dssp TTSCBCTTHHHH-SSCCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHH-HhCCCCCChHHHHHHHHHHHHHHHhc
Confidence 479999999999 5999 7888 87777888887753
No 482
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=24.61 E-value=35 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=19.6
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
...|++|||+. +|||..|+.+++
T Consensus 9 ~~~ti~diA~~-agVS~~TVSr~L 31 (344)
T 3kjx_A 9 RPLTLRDVSEA-SGVSEMTVSRVL 31 (344)
T ss_dssp -CCCHHHHHHH-HCCCSHHHHHHH
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHH
Confidence 45799999995 899999998886
No 483
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.59 E-value=1.2e+02 Score=22.11 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHH
Q 025983 148 DALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
..+..|++-+..+ .|. ..|+.+||. .+||+..+|-+.|
T Consensus 20 ~~Il~aa~~l~~~-~G~~~~s~~~Ia~-~agvs~~t~Y~~F 58 (206)
T 3kz9_A 20 QQLMEIALEVFAR-RGIGRGGHADIAE-IAQVSVATVFNYF 58 (206)
T ss_dssp HHHHHHHHHHHHH-SCCSSCCHHHHHH-HHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHh-cCcccccHHHHHH-HhCCCHHHHHHHc
Confidence 3454555444433 564 489999999 4899987776653
No 484
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=24.58 E-value=1.3e+02 Score=22.03 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHH
Q 025983 148 DALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+..|++=+-.+ .|. ..|+.+||+ .+||+..+|-+.|
T Consensus 15 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~-~agvs~~t~Y~~F 53 (202)
T 3lwj_A 15 QKILTCSLDLFIE-KGYYNTSIRDIIA-LSEVGTGTFYNYF 53 (202)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHH-HHCSCHHHHHHHC
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHH-HhCCCchhHHHHc
Confidence 3454444444444 464 699999999 4899988877653
No 485
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.56 E-value=88 Score=23.90 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 145 RNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 145 r~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.+.+.|..|++=+..+ .| ..|+.+||+ .+||+..+|-+.|.
T Consensus 11 ~~r~~Il~aA~~l~~~-~G-~~s~~~IA~-~aGvs~~tlY~hF~ 51 (213)
T 2g7g_A 11 LDRERIAEAALELVDR-DG-DFRMPDLAR-HLNVQVSSIYHHAK 51 (213)
T ss_dssp CCHHHHHHHHHHHHHH-HS-SCCHHHHHH-HTTSCHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHH-cC-CCCHHHHHH-HhCCCHhHHHHHcC
Confidence 4566677777666655 45 999999999 59999988876543
No 486
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.53 E-value=1.5e+02 Score=22.00 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 147 QDALLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 147 ~~~iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
.+.+..|++=+-.+ .| ...|+.+||+ .+||++.+|-+.|.
T Consensus 10 r~~Il~aA~~lf~~-~G~~~~s~~~IA~-~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 10 KARIFEAAVAEFAR-HGIAGARIDRIAA-EARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHHHHH-HTTTSCCHHHHHH-HHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHH-HhCCCHHHHHHHcC
Confidence 33444444444333 45 4789999999 48999888876653
No 487
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=24.51 E-value=1.3e+02 Score=22.09 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 148 DALLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
+.|..|+.=+-.+ .| ...|+.|||+ .+||++.+|-+.|.
T Consensus 15 ~~Il~aA~~lf~e-~G~~~~t~~~IA~-~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 15 KAILSASYELLLE-SGFKAVTVDKIAE-RAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHH-HHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-cCcccccHHHHHH-HcCCCHHHHHHHCC
Confidence 4444444444433 45 4689999999 58999999987754
No 488
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=24.50 E-value=1.1e+02 Score=21.58 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=25.4
Q ss_pred CCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 164 KPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 164 ~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
-|.++.++++. ++++..++.+..+.|.+
T Consensus 54 ~~~t~~eLa~~-l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 54 PGISVADLTKR-LIITGSSAAANVDGLIS 81 (154)
T ss_dssp TTEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 47999999995 99999999999999976
No 489
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=24.49 E-value=1.3e+02 Score=22.09 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 148 DALLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+..|++=+..+ .| ...|+.+||. .+||+..+|-+.|
T Consensus 21 ~~Il~aa~~l~~~-~G~~~~s~~~Ia~-~agvs~~t~Y~~F 59 (212)
T 1pb6_A 21 KAILSAALDTFSQ-FGFHGTRLEQIAE-LAGVSKTNLLYYF 59 (212)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHH-HTTSCHHHHHHHS
T ss_pred HHHHHHHHHHHHH-cCcchhhHHHHHH-HHCCChhHHHHhC
Confidence 4455555544444 45 4689999999 4899988887664
No 490
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=24.43 E-value=93 Score=22.45 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+.+..|++=+-.+ .|. ..|+.+||+ .+||+..+|-+.|
T Consensus 11 ~r~~Il~aa~~l~~~-~G~~~~t~~~IA~-~agvs~~t~Y~~F 51 (191)
T 3on4_A 11 TKERILAVAEALIQK-DGYNAFSFKDIAT-AINIKTASIHYHF 51 (191)
T ss_dssp HHHHHHHHHHHHHHH-HCGGGCCHHHHHH-HHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHH-HhCCCcchhhhcC
Confidence 344555555544444 565 599999999 5899988776653
No 491
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=24.33 E-value=1.3e+02 Score=23.15 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHh-----CCCHHHHHHHHHHHHHHhCCc
Q 025983 154 CLYIACRQEDKPRTVKEICSVAN-----GATKKEIGRAKEYIVKQLGLE 197 (245)
Q Consensus 154 ~lY~acR~~~~~~tl~dia~~~~-----~v~~~~i~~~~~~l~~~l~~~ 197 (245)
.+.+-++..+...|-++|++. + +++..++....+.|++.|+..
T Consensus 161 vL~~l~~~~~~~~s~~eIa~~-lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 161 LLVALARKPRQVFTRDVLLEQ-VWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp HHHHHHHSTTCCBCHHHHHHH-HTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHCCCceecHHHHHHH-HcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 344445666788999999995 7 899999999999999999864
No 492
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.29 E-value=31 Score=18.17 Aligned_cols=8 Identities=38% Similarity=0.962 Sum_probs=5.7
Q ss_pred CCCCCCCC
Q 025983 4 AFCSDCKK 11 (245)
Q Consensus 4 ~~Cp~Cg~ 11 (245)
.+||.|+.
T Consensus 4 ~~C~~C~k 11 (31)
T 1zfo_A 4 PNCARCGK 11 (31)
T ss_dssp CBCSSSCS
T ss_pred CcCCccCC
Confidence 46777776
No 493
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.23 E-value=1e+02 Score=22.21 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCC-CCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 148 DALLAACLYIACRQED-KPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~-~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
..+..|++=+..+ .| ...|+.+||+ .+||+..+|-+.|
T Consensus 11 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~-~agvs~~t~Y~~F 49 (194)
T 2g7s_A 11 DDILQCARTLIIR-GGYNSFSYADISQ-VVGIRNASIHHHF 49 (194)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHH-HHCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHH-HhCCCchHHHHHc
Confidence 4455555554444 45 4689999999 4899987776653
No 494
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=24.19 E-value=53 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 148 DALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+..|++=+..+. ...|+.+|++ .+||++.+|-+.|
T Consensus 17 ~~Il~aA~~lf~~~--~~~t~~~Ia~-~agvs~~t~Y~~F 53 (190)
T 2v57_A 17 RAILDAAMLVLADH--PTAALGDIAA-AAGVGRSTVHRYY 53 (190)
T ss_dssp HHHHHHHHHHHTTC--TTCCHHHHHH-HHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHH-HhCCCHHHHHHHc
Confidence 34444444444343 7789999999 4899988877664
No 495
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.17 E-value=1.6e+02 Score=20.13 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCCcC--HHHHHHHHh-CCCHHHHHHHHHHHHH
Q 025983 163 DKPRT--VKEICSVAN-GATKKEIGRAKEYIVK 192 (245)
Q Consensus 163 ~~~~t--l~dia~~~~-~v~~~~i~~~~~~l~~ 192 (245)
.-|.+ +.|+++ .+ +++..++.+..+.|.+
T Consensus 38 ~g~~~~~~~eL~~-~l~gis~~~ls~~L~~Le~ 69 (111)
T 3df8_A 38 NGSTRQNFNDIRS-SIPGISSTILSRRIKDLID 69 (111)
T ss_dssp SSSSCBCHHHHHH-TSTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHH-HccCCCHHHHHHHHHHHHH
Confidence 34666 999999 59 9999999999998865
No 496
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=24.12 E-value=1.3e+02 Score=21.88 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 147 QDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 147 ~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
.+.+..|++=+-.+ .|...|+.+||+ .+||+..+|-+.|
T Consensus 17 r~~Il~aA~~lf~~-~G~~~s~~~IA~-~agvs~~tlY~~F 55 (194)
T 2q24_A 17 RDKILAAAVRVFSE-EGLDAHLERIAR-EAGVGSGTLYRNF 55 (194)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCHHHHHH-HTTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-cCcCCCHHHHHH-HhCCChHHHHHHc
Confidence 34444444433333 454489999999 5899988877653
No 497
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=23.87 E-value=1.3e+02 Score=22.16 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHH
Q 025983 148 DALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 148 ~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+..|++=+..+ .|. ..|+.+||+ .+||+..+|-+.|
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~Ia~-~agvs~~t~Y~~F 55 (220)
T 3lhq_A 17 QHILDVALRLFSQ-QGVSATSLAEIAN-AAGVTRGAIYWHF 55 (220)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHH-HHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHH-cCcccCCHHHHHH-HhCCCceeehhhc
Confidence 4454444444444 464 599999999 4899988777663
No 498
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=23.81 E-value=59 Score=23.66 Aligned_cols=41 Identities=10% Similarity=0.014 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhCCCHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAK 187 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~~~tl~dia~~~~~v~~~~i~~~~ 187 (245)
+.+.+..|++=+..+.-=...|+.+||+ .+||+..+|-+.|
T Consensus 11 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~-~agvs~~t~Y~~F 51 (196)
T 3col_A 11 KQVKIQDAVAAIILAEGPAGVSTTKVAK-RVGIAQSNVYLYF 51 (196)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHH-HHTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHH-HhCCcHHHHHHHh
Confidence 3455666666655554324699999999 5899987776543
No 499
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=23.64 E-value=93 Score=22.79 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHhCCC-CcCHHHHHHHHhCCCHHHHHHHHH
Q 025983 146 NQDALLAACLYIACRQEDK-PRTVKEICSVANGATKKEIGRAKE 188 (245)
Q Consensus 146 ~~~~iaAA~lY~acR~~~~-~~tl~dia~~~~~v~~~~i~~~~~ 188 (245)
+.+.|..|++=+..+ .|. ..|+.+|++ .+||+..+|-+.|.
T Consensus 9 tr~~Il~AA~~l~~~-~G~~~~t~~~IA~-~agvs~~t~Y~~F~ 50 (195)
T 3frq_A 9 SDDEVLEAATVVLKR-CGPIEFTLSGVAK-EVGLSRAALIQRFT 50 (195)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHCCHHHHHH-HHTCCHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHh-hCcccCCHHHHHH-HhCCCHHHHHHHcC
Confidence 355565555554444 454 689999999 48999888876654
No 500
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=23.60 E-value=1.7e+02 Score=24.26 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHh------CCCCcCHHHHHHHHhCCCHHHHHHHHHHHHH
Q 025983 149 ALLAACLYIACRQ------EDKPRTVKEICSVANGATKKEIGRAKEYIVK 192 (245)
Q Consensus 149 ~iaAA~lY~acR~------~~~~~tl~dia~~~~~v~~~~i~~~~~~l~~ 192 (245)
...+++++.++++ .+-|.|..|||.. +++++..+.+..+.|..
T Consensus 33 ~~~~~~l~~a~~lglf~~l~~g~~t~~elA~~-~g~~~~~l~rlLr~l~~ 81 (348)
T 3lst_A 33 YTYAAALRAAAAVGVADHLVDGPRTPAELAAA-TGTDADALRRVLRLLAV 81 (348)
T ss_dssp HHHHHHHHHHHHHTGGGGGTTSCBCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchhHhhCCCCCHHHHHHH-hCcCHHHHHHHHHHHHh
Confidence 4555666666662 2348999999994 99999988888877753
Done!