BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025984
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 296 bits (757), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 143/165 (86%), Positives = 155/165 (93%)
Query: 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
LDSISGSGR +NSMFPEVDSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDA
Sbjct: 62 LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 121
Query: 200 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 244
A++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + + A
Sbjct: 122 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA 166
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 120/159 (75%), Positives = 145/159 (91%)
Query: 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
YTVGDF T ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4 YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
ISG + D ++FP+VDSTWKTFNE+QKL+SKT GK+VGDL TP+P+VVR++TNLEDAARL
Sbjct: 64 ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLEDAARL 123
Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATE 241
LLETK+RRLPVVDADGKL+GI+TRGNVVRAALQIK +
Sbjct: 124 LLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 10/83 (12%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--AL-- 140
VGD T VV+ +T +++A +L+E + PV+D D KL+G+++ +++ AL
Sbjct: 100 VGDLXTPSP--LVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI 157
Query: 141 ----DSISGSGRADNSMFPEVDS 159
DSISG + D ++FP+VDS
Sbjct: 158 KRNADSISGRSQNDTNLFPDVDS 180
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 256 bits (655), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 130/165 (78%), Positives = 141/165 (85%), Gaps = 14/165 (8%)
Query: 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDA 199
LDS DSTWKTFN VQKLLSKTNGK+VGDLMTPAP+VV E TNLEDA
Sbjct: 62 LDS--------------GDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 107
Query: 200 ARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHATEMGA 244
A++LLETKYRRLPVVD+DGKLVGIITRGNVVRAALQIK + + A
Sbjct: 108 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA 152
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 35/138 (25%)
Query: 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
E++ + P TVD AL ++ + I G PV++D+ K+VG+++ D+ A +
Sbjct: 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDIAARE----------- 148
Query: 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLP 212
GK+V +LMT + V E+ +E+A ++++E + RLP
Sbjct: 149 -----------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLP 185
Query: 213 VVDADGKLVGIITRGNVV 230
VVD GKLVG+IT ++V
Sbjct: 186 VVDERGKLVGLITMSDLV 203
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 69 GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
G +T A G V + MT +E+ V + V+EAL+I++E RI PV+D+ KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
VGL++ DL+A + R +N
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 34/130 (26%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
V P TV EA++++ E +I G PV+D++ +LVGL+++ D+
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV-------------------- 147
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVD 215
+K LSK + DLMTP +V +LE A +L + + +LP+V
Sbjct: 148 --------RFEKNLSKK----IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS 195
Query: 216 ADGKLVGIIT 225
D KLVG+IT
Sbjct: 196 KDNKLVGLIT 205
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
+ D MT +E+L V P ++++A EIL + RI P++ D KLVGL++ D++++
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP 216
Query: 145 GSGRADNSMF---PEVDSTWKTFNEVQKLLS 172
+ R + V ++ +T V+KL+
Sbjct: 217 NAARDEKGRLLVGAAVGTSPETMERVEKLVK 247
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV 229
++ KT ++ D P+ V +++A L+ E K LPVVD +G+LVG++T +V
Sbjct: 93 IVKKTENGIIYD-----PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 33/129 (25%)
Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162
T + ALE+ + ++ FPV++ + KLVG++S
Sbjct: 19 TRNYALELFKKYKVRSFPVVNKEGKLVGIIS----------------------------- 49
Query: 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVG 222
V+++L + + + L+ VV+E L+ AA+L+LE YRR+ VVD+ GK VG
Sbjct: 50 ----VKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVG 105
Query: 223 IITRGNVVR 231
I+T G+++R
Sbjct: 106 ILTVGDIIR 114
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
V +MT PV + A L + K R PVV+ +GKLVGII+
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIIS 49
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN-- 175
PV+D + LVG+V + DLL DS + + W + L K
Sbjct: 159 ALPVVDSEGNLVGIVDETDLLR-DSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQ 217
Query: 176 --GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233
K V ++MT +V + + A + + +LPV+ +G L+G+I ++++
Sbjct: 218 LPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 277
Query: 234 LQIK 237
++ K
Sbjct: 278 VKSK 281
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
V + MT ++ V P TV E + + I PVI + L+GL+ D+DLL +
Sbjct: 223 VAEIMT--RDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV 276
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 28/158 (17%)
Query: 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR 148
M K ++ VVK T+ +A ++++E V+D K VG+++ D++ +
Sbjct: 64 MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIR----RYFAK 119
Query: 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKY 208
++ E++ + Q+ +S +V E T L+ A + LL +
Sbjct: 120 SEKYKGVEIEPYY------QRYVS----------------IVWEGTPLKAALKALLLSNS 157
Query: 209 RRLPVVDADGKLVGIITRGNVVRAA--LQIKHATEMGA 244
LPVVD++G LVGI+ +++R + ++I +TE+ A
Sbjct: 158 MALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAA 195
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 29/140 (20%)
Query: 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN 151
+E + +K +DEA+E + K + G P+++D+ +L+ L+++ D++
Sbjct: 91 EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI------------R 138
Query: 152 SMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRL 211
++ ++D NEV + D +T +V L+D AR ++ +RRL
Sbjct: 139 ALLDKIDE-----NEV-----------IDDYITRDVIVATPGERLKDVARTMVRNGFRRL 182
Query: 212 PVVDADGKLVGIITRGNVVR 231
PVV ++G+LVGIIT + ++
Sbjct: 183 PVV-SEGRLVGIITSTDFIK 201
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
V PTTT+ +AL + E + PV++ + K+VG+++ D++ G G N + +
Sbjct: 17 VYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV---DFMGGGSKYNLIREK 73
Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
+ + L+ N + V ++M + ++E ++++A L P+V+
Sbjct: 74 HERNF---------LAAIN-EPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND 123
Query: 217 DGKLVGIITRGNVVRAAL 234
+ +L+ +IT +V+RA L
Sbjct: 124 ENQLISLITERDVIRALL 141
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
EI+V I PV+D++ ++ G++++ D+L
Sbjct: 247 EIMVTNDIGALPVVDENLRIKGIITEKDVL 276
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
+V D+++ P+ ++ +AA++L++ LP+VD GKLVGIIT ++ +A Q K
Sbjct: 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 61
Query: 238 HATE 241
E
Sbjct: 62 KTIE 65
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 31/126 (24%)
Query: 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 165
EA +IL++ I P++D+ KLVG+++ +D
Sbjct: 22 EAAKILIKHNINHLPIVDEHGKLVGIITSWD----------------------------- 52
Query: 166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
+ K L++ N K + ++MT + E ++ A + + +PVVD ++VGI+T
Sbjct: 53 -IAKALAQ-NKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVT 110
Query: 226 RGNVVR 231
++ R
Sbjct: 111 SEDISR 116
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237
+V D+++ P+ ++ +AA++L++ LP+VD GKLVGIIT ++ +A Q K
Sbjct: 4 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 63
Query: 238 HATE 241
E
Sbjct: 64 KTIE 67
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 31/126 (24%)
Query: 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 165
EA +IL++ I P++D+ KLVG+++ +D
Sbjct: 24 EAAKILIKHNINHLPIVDEHGKLVGIITSWD----------------------------- 54
Query: 166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
+ K L++ N K + ++MT + E ++ A + + +PVVD ++VGI+T
Sbjct: 55 -IAKALAQ-NKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVT 112
Query: 226 RGNVVR 231
++ R
Sbjct: 113 SEDISR 118
>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+ Bound Form
Length = 278
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
V ++M P V VR T+ E+ ARL+ + + LPVVD +G+LVGI+T +V+
Sbjct: 201 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 252
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 126 WKLVGLVSDYDLLAL-DSISGSGRADNSMFPEVDSTW--KTFNEVQKLLSKTNGKMVGDL 182
W+L ++ + L L D++ + D + F + +T EV+ L ++ G L
Sbjct: 82 WRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEAL-ARYEEDEAGGL 140
Query: 183 MTPAPVVVRETTNLEDAARLL------LETKYRRLPVVDADGKLVGIITRGNVVRA 232
MTP V VRE +E+ R L ET Y + VVD G+L G+++ +++ A
Sbjct: 141 MTPEYVAVREGMTVEEVLRFLRRAAPDAETIY-YIYVVDEKGRLKGVLSLRDLIVA 195
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
V ++M P V VR T+ E+ ARL+ + + LPVVD +G+LVGI+T +V+
Sbjct: 221 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 272
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 126 WKLVGLVSDYDLLAL-DSISGSGRADNSMFPEVDSTW--KTFNEVQKLLSKTNGKMVGDL 182
W+L ++ + L L D++ + D + F + +T EV+ L ++ G L
Sbjct: 102 WRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEAL-ARYEEDEAGGL 160
Query: 183 MTPAPVVVRETTNLEDAARLL------LETKYRRLPVVDADGKLVGIITRGNVVRA 232
MTP V VRE +E+ R L ET Y + VVD G+L G+++ +++ A
Sbjct: 161 MTPEYVAVREGMTVEEVLRFLRRAAPDAETIY-YIYVVDEKGRLKGVLSLRDLIVA 215
>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
pdb|2YVZ|B Chain B, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
Length = 278
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
V ++ P V VR T+ E+ ARL + + LPVVD +G+LVGI+T +V+
Sbjct: 201 VAEIXNPKVVYVRTDTDQEEVARLXADYDFTVLPVVDEEGRLVGIVTVDDVL 252
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 126 WKLVGLVSDYDLLAL-DSISGSGRADNSMFPEVDSTW--KTFNEVQKLLSKTNGKMVGDL 182
W+L ++ + L L D++ + D + F + +T EV+ L ++ G L
Sbjct: 82 WRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEAL-ARYEEDEAGGL 140
Query: 183 MTPAPVVVRETTNLEDAARLL------LETKYRRLPVVDADGKLVGIITRGNVVRA 232
TP V VRE +E+ R L ET Y + VVD G+L G+++ +++ A
Sbjct: 141 XTPEYVAVREGXTVEEVLRFLRRAAPDAETIY-YIYVVDEKGRLKGVLSLRDLIVA 195
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 34/144 (23%)
Query: 100 PTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
P V EA E+ RI+G P+++ + KLVG++++ D
Sbjct: 105 PEHKVSEAEELXQRYRISGVPIVETLANRKLVGIITNRD--------------------- 143
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
+ +S N + + V T+LE A R+L E + +LP+VD
Sbjct: 144 ----------XRFISDYNAPISEHXTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNS 193
Query: 218 GKLVGIITRGNVVRAALQIKHATE 241
G+L G+IT ++ + ++ HA +
Sbjct: 194 GRLSGLITIKDIEK-VIEFPHAAK 216
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
T E L T ++ A IL E RI P++D+ +L GL++ D+
Sbjct: 159 TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDI 205
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 32/136 (23%)
Query: 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 165
EA E ++ +I+ PVIDD+ K++G+V+ D+ +N
Sbjct: 29 EAFEKXLKYKISSLPVIDDENKVIGIVTTTDI-------------------------GYN 63
Query: 166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL-----LETKYRRLPVVDADGKL 220
++ T +GD+ T + + E ++ +A + E +LPVVD + KL
Sbjct: 64 LIRD--KYTLETTIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKL 121
Query: 221 VGIITRGNVVRAALQI 236
VGII+ G+++R +I
Sbjct: 122 VGIISDGDIIRTISKI 137
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
V D+ T + + + +A L+ K LPV+D + K++GI+T ++ ++ K+
Sbjct: 10 VKDVXTKNVITAKRHEGVVEAFEKXLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY 69
Query: 239 ATE 241
E
Sbjct: 70 TLE 72
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 100 PTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
P V +A ++ + RI+G PV++ D+ KLVG++++ D+
Sbjct: 128 PEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM-------------------- 167
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
+Q K + M + + APV T L +A ++L + K +LP+VD +
Sbjct: 168 -------RFIQDYSIKISDVMTKEQLITAPV----GTTLSEAEKILQKYKIEKLPLVDNN 216
Query: 218 GKLVGIIT 225
G L G+IT
Sbjct: 217 GVLQGLIT 224
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ D MT KE+L TT+ EA +IL + +I P++D++ L GL++ D+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 36/135 (26%)
Query: 100 PTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
P TV + LEI + G P+ + D KL+G+V+ D+ F +
Sbjct: 153 PDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV---------------QFQD 197
Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
++ K+ +MT V LE A LL ETK +LP+VD+
Sbjct: 198 AETPIKS------------------VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS 239
Query: 217 DGKLVGIITRGNVVR 231
+G LV ++ R ++++
Sbjct: 240 NGHLVSLVARSDLLK 254
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 36/135 (26%)
Query: 100 PTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
P TV + LEI + G P+ + D KL+G+V+ D+ F +
Sbjct: 153 PDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV---------------QFQD 197
Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
++ K+ +MT V LE A LL ETK +LP+VD+
Sbjct: 198 AETPIKS------------------VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS 239
Query: 217 DGKLVGIITRGNVVR 231
+G LV ++ R ++++
Sbjct: 240 NGHLVSLVARSDLLK 254
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 87 DFMTTK-EELHV--------VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+FM+ EEL + V+ TT V AL I V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
+ L + D S+ + F V K + ET LE
Sbjct: 74 INLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCY------------------LHET--LE 113
Query: 198 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
L+E + RL VVD + + GI++ ++++A
Sbjct: 114 TIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQA 148
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ--I 236
+ D++T V VRE L+ A+ LE + PVVD +G LVGIIT + +R ++ I
Sbjct: 20 IRDILTSPVVTVREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFLRGSIPFWI 79
Query: 237 KHATEM 242
A+E+
Sbjct: 80 YEASEI 85
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
V+ T+D + +E +I PV+D + LVG++++ D L GS E+
Sbjct: 31 VREDDTLDAVAKTXLEHQIGXAPVVDQNGHLVGIITESDFL-----RGSIPFWIYEASEI 85
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR----RLPV 213
S EV+ L +T K+ + PVV T ED+ + + R R+PV
Sbjct: 86 LSRAIPAPEVEHLF-ETGRKLTASAVXTQPVV---TAAPEDSVGSIADQXRRHGIHRIPV 141
Query: 214 VDADGKLVGIITR 226
V DG VGI+TR
Sbjct: 142 V-QDGVPVGIVTR 153
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
V D+MT P + T L DA L+ R +P+VDA+ KL+GI+++ +++ A
Sbjct: 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA 60
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
S + V D MT H + T T+++A ++ I P++D + KL+G+VS DLLA
Sbjct: 2 SLMIKVEDMMTRHP--HTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA 59
Query: 140 LD--SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
S+ S + D+ F EV M D+ + AP L+
Sbjct: 60 AQESSLQRSAQGDSLAF------ETPLFEV----------MHTDVTSVAP-----QAGLK 98
Query: 198 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236
++A + + K LPVV D LVGIIT + V A+ +
Sbjct: 99 ESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIAINL 136
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 87 DFMTTK-EELHV--------VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+FM+ EEL + V+ TT V AL I V+ R++ PV+D+ ++V + S +D+
Sbjct: 186 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 245
Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
+ L + D S V K L + G L + ET LE
Sbjct: 246 INLAAEKTYNNLDVS--------------VTKALQHRSHYFEGVL----KCYLHET--LE 285
Query: 198 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
L+E + RL VVD + GI++ ++++A
Sbjct: 286 AIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA 320
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ--I 236
+ D++T V VRE L+ A+ LE + PVVD +G LVGIIT + +R ++ I
Sbjct: 20 IRDILTSPVVTVREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWI 79
Query: 237 KHATEM 242
A+E+
Sbjct: 80 YEASEI 85
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
V+ T+D + +E +I PV+D + LVG++++ D L GS E+
Sbjct: 31 VREDDTLDAVAKTXLEHQIGCAPVVDQNGHLVGIITESDFL-----RGSIPFWIYEASEI 85
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR----RLPV 213
S EV+ L +T K+ + PVV T ED+ + + R R+PV
Sbjct: 86 LSRAIPAPEVEHLF-ETGRKLTASAVXTQPVV---TAAPEDSVGSIADQXRRHGIHRIPV 141
Query: 214 VDADGKLVGIITR 226
V DG VGI+TR
Sbjct: 142 V-QDGVPVGIVTR 153
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 97 VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
VV+ T ++E ++ ++E +T + D KLVG++ LL + G P+
Sbjct: 28 VVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFG-----FIPK 82
Query: 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA 216
+ + +++L++K +++ D PV V T LE+A +L+++ + +PVVD
Sbjct: 83 EELIRSS---MKRLIAKNASEIMLD-----PVYVHMDTPLEEALKLMIDNNIQEMPVVDE 134
Query: 217 DGKLVG 222
G++VG
Sbjct: 135 KGEIVG 140
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233
K V L++ P VV E T +E+ +LE R V D KLVG+I ++++ +
Sbjct: 16 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
T ++EAL+++++ I PV+D+ ++VG ++ ++L
Sbjct: 112 TPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 148
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 87 DFMTTK-EELHV--------VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+FM+ EEL + V+ TT V AL I V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
+ L + D S+ + F V K + ET LE
Sbjct: 74 INLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCY------------------LHET--LE 113
Query: 198 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
L+E + +L VVD + + GI++ ++++A
Sbjct: 114 TIINRLVEAEVHQLVVVDENDVVKGIVSLSDILQA 148
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 35/137 (25%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
V P+T + E L++ E +GFPV++ +LVG+V+ DL
Sbjct: 121 VTPSTKIIELLQMAREYGFSGFPVVEQ-GELVGIVTGRDLR------------------- 160
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVD 215
+ G V +MTP V RE T LE+ L E + ++ VVD
Sbjct: 161 -------------VKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD 207
Query: 216 ADGKLVGIITRGNVVRA 232
+ L G++T ++ +A
Sbjct: 208 ENFYLRGLVTFRDIEKA 224
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
TV MT K++L + T ++E L E RI V+D+++ L GLV+ D+
Sbjct: 168 TVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 221
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L L I
Sbjct: 182 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 239
Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
G D S+ ++ + ++ + + + T + +M D R
Sbjct: 240 KGGIYNDLSL-SVGEALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 282
Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
+ + R VVD G+LVG++T ++++ L
Sbjct: 283 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 312
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L L I
Sbjct: 189 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 246
Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
G D S+ ++ + ++ + + + T + +M D R
Sbjct: 247 KGGIYNDLSL-SVGEALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 289
Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
+ + R VVD G+LVG++T ++++ L
Sbjct: 290 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 319
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 160 TWKTFNEVQKLLSK-TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218
T + F+ LL K V ++MT V ED L+ E + R LPV+D DG
Sbjct: 56 TERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DG 114
Query: 219 KLVGIITRGNVVRAAL 234
K++G+++ G++V+ A+
Sbjct: 115 KVIGLLSIGDLVKDAI 130
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
V T ++ + ++ E R+ PV+ DD K++GL+S DL+ D+IS
Sbjct: 87 VDLNNTNEDCMALITEMRVRHLPVL-DDGKVIGLLSIGDLVK-DAIS 131
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 35/137 (25%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
V P+T + E L++ E +GFPV++ +LVG+V+ DL
Sbjct: 101 VTPSTKIIELLQMAREYGFSGFPVVEQ-GELVGIVTGRDLR------------------- 140
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVD 215
+ G V +MTP V RE T LE+ L E + ++ VVD
Sbjct: 141 -------------VKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD 187
Query: 216 ADGKLVGIITRGNVVRA 232
+ L G++T ++ +A
Sbjct: 188 ENFYLRGLVTFRDIEKA 204
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
TV MT K++L + T ++E L E RI V+D+++ L GLV+ D+
Sbjct: 148 TVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDI 201
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 87 DFMTTK-EELHV--------VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+FM+ EEL + V+ TT V AL I V+ R++ PV+D+ ++V + S +D+
Sbjct: 14 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDV 73
Query: 138 LALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLE 197
+ L + D S+ + F V K + ET LE
Sbjct: 74 INLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCY------------------LHET--LE 113
Query: 198 DAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
L+E + L VVD + + GI++ ++++A
Sbjct: 114 TIINRLVEAEVHGLVVVDENDVVKGIVSLSDILQA 148
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
+GD + T++ + + TT V + +++L + R++ P+ID++ L+ + YD+L L I
Sbjct: 10 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 67
Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
G D S+ ++ + ++ + + + T + +M D R
Sbjct: 68 KGGIYNDLSL-SVGEALMRRSDDFEGVYTCTKNDKLSTIM--------------DNIR-- 110
Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
+ + R VVD G+LVG++T ++++ L
Sbjct: 111 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 140
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 33/128 (25%)
Query: 100 PTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
P V +A + + RI+G PV++ D+ KLVG++++ D F
Sbjct: 128 PEHQVYDAEHLXGKYRISGVPVVNNLDERKLVGIITNRD---------------XRF--- 169
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
+Q K + + + APV T L +A ++L + K +LP+VD +
Sbjct: 170 ---------IQDYSIKISDVXTKEQLITAPV----GTTLSEAEKILQKYKIEKLPLVDNN 216
Query: 218 GKLVGIIT 225
G L G+IT
Sbjct: 217 GVLQGLIT 224
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ TKE+L TT+ EA +IL + +I P++D++ L GL++ D+
Sbjct: 180 VXTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
>pdb|3K6E|A Chain A, Crystal Structure Of Cbs Domain Protein From Streptococcus
Pneumoniae Tigr4
pdb|3K6E|B Chain B, Crystal Structure Of Cbs Domain Protein From Streptococcus
Pneumoniae Tigr4
Length = 156
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 25/151 (16%)
Query: 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 147
F+T + L V+ T D A +L + T PV+ D+ + VG + D+ A
Sbjct: 20 FLTPAKNLAVLIDTHNADHATLLLSQXTYTRVPVVTDEKQFVGTIGLRDIXAY------- 72
Query: 148 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK 207
+ ++ + E+ + + +V T VV + T E +L+ E+
Sbjct: 73 QXEHDLSQEIXA---------------DTDIVHXTKTDVAVVSPDFTITEVLHKLVDES- 116
Query: 208 YRRLPVVDADGKLVGIITRGNVVRAALQIKH 238
LPVVDA+G GIITR ++++A + H
Sbjct: 117 --FLPVVDAEGIFQGIITRKSILKAVNALLH 145
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 43/161 (26%)
Query: 76 AAPSSG--VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
A P SG +YTV TK + V +A++++ EK I V+D D + G+V+
Sbjct: 15 AKPDSGRTIYTV-----TKNDF--------VYDAIKLMAEKGIGALLVVDGD-DIAGIVT 60
Query: 134 DYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRET 193
+ D A + E S E+ MT V +
Sbjct: 61 ERDY-----------ARKVVLQERSSKATRVEEI---------------MTAKVRYVEPS 94
Query: 194 TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
+ ++ L+ E + R LPV+D GKL+G+I+ G++V++ +
Sbjct: 95 QSTDECMALMTEHRMRHLPVLDG-GKLIGLISIGDLVKSVI 134
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
V D MT +L T + EA +I+ EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
V D MT +L T + EA +I+ EK++ P+IDDD L +V DYD
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 85 VGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
+GD + T++ + TT V + ++ L + R++ P+ID++ L+ + YD+L L I
Sbjct: 10 IGDLNIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGL--I 67
Query: 144 SGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLL 203
G D S+ V + L + + G + + + D R
Sbjct: 68 KGGIYNDLSL------------SVGEALXRRSDDFEGVYTCTKN---DKLSTIXDNIR-- 110
Query: 204 LETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
+ + R VVD G+LVG++T ++++ L
Sbjct: 111 -KARVHRFFVVDDVGRLVGVLTLSDILKYIL 140
>pdb|2EMQ|A Chain A, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
pdb|2EMQ|B Chain B, Hypothetical Conserved Protein (gk1048) From Geobacillus
Kaustophilus
Length = 157
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
TV F+ +++ V+P +D AL +L + + PV+D +KL GL+S + +D+I
Sbjct: 12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLIS--MTMMMDAI 69
Query: 144 SGSGRAD 150
G R +
Sbjct: 70 LGLERIE 76
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 27/135 (20%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
V P ++ EA L +I V D D ++G+ ++ DL+ +++G G A
Sbjct: 40 VGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV--KAVAGQGAAS------- 90
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
+Q+ +S MT V + + + ++ ++R +PV + +
Sbjct: 91 ---------LQQSVSVA--------MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPV-EEN 132
Query: 218 GKLVGIITRGNVVRA 232
G+L GII+ G+VV+A
Sbjct: 133 GRLAGIISIGDVVKA 147
>pdb|3LQN|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Of
Unknown Function From Bacillus Anthracis Str. Ames
Ancestor
Length = 150
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 28/149 (18%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS 144
V D M + E++ V+ ++ AL +LV+ + PV+D +KL GL+S + LD I
Sbjct: 17 VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTA--MILDGIL 74
Query: 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLED--AARL 202
G R + E+ K M D+ PV+ LED A L
Sbjct: 75 GLERIEFERLEEM---------------KVEQVMKQDI----PVL-----KLEDSFAKAL 110
Query: 203 LLETKYRRLPVVDADGKLVGIITRGNVVR 231
+ + + V+ DG GI+TR +++
Sbjct: 111 EMTIDHPFICAVNEDGYFEGILTRRAILK 139
>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
pdb|1XKF|B Chain B, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
Length = 133
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 27/134 (20%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
V T+ A + + E I P+ DD +L G+++D D++ +G + P
Sbjct: 21 VGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAG-------LDP-- 71
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217
N G+L + V ++++ ++ E + RR+PV+ ++
Sbjct: 72 -----------------NTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVI-SE 113
Query: 218 GKLVGIITRGNVVR 231
+LVGI+T ++ R
Sbjct: 114 HRLVGIVTEADIAR 127
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 26/125 (20%)
Query: 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160
TTV +A++I+ E + G V DD+ VGL+S+ ++
Sbjct: 39 NTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII---------------------- 76
Query: 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKL 220
K F K + ++V + P P V+ +++D A L E R VVD G++
Sbjct: 77 -KRFIPRNKKPDEVPIRLV--MRKPIP-KVKSDYDVKDVAAYLSENGLERCAVVDDPGRV 132
Query: 221 VGIIT 225
VGI+T
Sbjct: 133 VGIVT 137
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 26/125 (20%)
Query: 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160
TTV +A++I+ E + G V DD+ VGL+S+ ++
Sbjct: 25 NTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII---------------------- 62
Query: 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKL 220
K F K + ++V + P P V + +++D A L E R VVD G++
Sbjct: 63 -KRFIPRNKKPDEVPIRLV--MRKPIPKV-KSDYDVKDVAAYLSENGLERCAVVDDPGRV 118
Query: 221 VGIIT 225
VGI+T
Sbjct: 119 VGIVT 123
>pdb|1YAV|A Chain A, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
pdb|1YAV|B Chain B, Crystal Structure Of Cbs Domain-Containing Protein Ykul
From Bacillus Subtilis
Length = 159
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
TVG FM +++ V+ ++ AL +L + T PV+D ++L GL+ + ++SI
Sbjct: 15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTN--MIMNSI 72
Query: 144 SGSGRADNSMFPEVDS 159
G R + F ++D
Sbjct: 73 FGLERIE---FEKLDQ 85
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 179 VGDLMTPAPVV--VRETTNLEDAARLLLETKYRRLPVVDADGKLVGII 224
VG M A V V+ NLE A +L +T Y +PV+D +L G+I
Sbjct: 16 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
D++ TK+ L V V++ + E R + +PVID++ K+VG ++ + L++
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 240
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 182 LMTPAPVVVRETTNL-EDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
+MT +V T +L ED + ET+Y PV+D + K+VG I R +++
Sbjct: 190 VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ MT +E+L V T+ EA EIL + P++++D +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEDDELVAIIARTDL 227
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
D++ TK+ L V V++ + E R + +PVID++ K+VG ++ + L++
Sbjct: 185 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 237
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 182 LMTPAPVVVRETTNL-EDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230
+MT +V T +L ED + ET+Y PV+D + K+VG I R +++
Sbjct: 187 VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 236
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 226
D TP PV V T++ A + + + LPVVD + K VGI+T
Sbjct: 97 DYXTPNPVTVYNTSDEFTAINIXVTRNFGSLPVVDINDKPVGIVTE 142
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 23/155 (14%)
Query: 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
++ V F +TK + + +D+A+++ + + PVIDDD K+VG+V+ ++
Sbjct: 155 IFPVKVFXSTK--VQTIYKEVRLDQAVKLXLRRGFRRLPVIDDDNKVVGIVT-----VVN 207
Query: 142 SISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAAR 201
+I +A + + P D + GK+V D+ V + E ++ AA
Sbjct: 208 AIKQLAKAVDKLDP--DYFY--------------GKVVKDVXVTNLVTIDELASVNRAAA 251
Query: 202 LLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236
+ + L +++ D + GIIT +++ A I
Sbjct: 252 EXIVKRIGSLLILNKDNTIRGIITERDLLIALHHI 286
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 34/142 (23%)
Query: 102 TTVDE--ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
T DE A+ I V + PV+D + K VG+V++ + L L + + +FP
Sbjct: 108 NTSDEFTAINIXVTRNFGSLPVVDINDKPVGIVTEREFLLL------YKDLDEIFP---- 157
Query: 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGK 219
K F T + +E L+ A +L L +RRLPV+D D K
Sbjct: 158 -VKVFXS-----------------TKVQTIYKEV-RLDQAVKLXLRRGFRRLPVIDDDNK 198
Query: 220 LVGIITRGNVVRAALQIKHATE 241
+VGI+T VV A Q+ A +
Sbjct: 199 VVGIVT---VVNAIKQLAKAVD 217
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 99 KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156
+ + TV++ I+ E +GFPV+ + +LVG V DL+ SI + + + +
Sbjct: 31 QDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLII--SIENARKKQDGV--- 85
Query: 157 VDSTWKTFNE--VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVV 214
V ++ F E + +++ +P V + T +E + + R+ +V
Sbjct: 86 VSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQC-LV 144
Query: 215 DADGKLVGIITRGNVVRAALQIKHATEMGAQ 245
+G+L+GIIT+ +V +KH +M Q
Sbjct: 145 THNGRLLGIITKKDV------LKHIAQMANQ 169
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 168 QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRG 227
Q L K V D + PVV+ E ++ DA + L VVD D LVG+++R
Sbjct: 8 QLLADKLKKLQVKDFQS-IPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRK 66
Query: 228 NVVRAAL 234
+++RA++
Sbjct: 67 DLLRASI 73
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ MT +E+L V T+ EA EIL + P+++++ +LV +++ DL
Sbjct: 177 EIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDL 227
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232
+ T + + +RE + + A L + R LPVVD G L GII+ ++ RA
Sbjct: 71 EFXTASLITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRA 122
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 190 VRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234
V+ +T++++A+RL E L V++ DG +VG T+ +++R +
Sbjct: 20 VKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVI 64
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
VKP+T+V EA + E + VI+DD +VG + D++
Sbjct: 20 VKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDII 60
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
V+P T+ + E+ GFPV+ ++ +LVG+++ D+
Sbjct: 102 VRPEQTIADVXELTHYHGFAGFPVVTENNELVGIITGRDV 141
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225
PV VR + D L + PVV + +LVGIIT
Sbjct: 99 PVTVRPEQTIADVXELTHYHGFAGFPVVTENNELVGIIT 137
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDS 142
T D + T L V T V +L +L I P+ D + K GL++ D + +
Sbjct: 23 TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK 82
Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
+S FPE + F +LL + + P + V +L DA
Sbjct: 83 Y----YYQSSSFPEAIAEIDKF----RLLGLREVERKIGAIPPETIYVHPMHSLMDACLA 134
Query: 203 LLETKYRRLPVVDADGK-----LVGIITRGNVVR 231
+ +++ RR+P++D DG+ +V ++T+ +++
Sbjct: 135 MSKSRARRIPLIDVDGETGSEMIVSVLTQYRILK 168
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLALDS 142
T D + T L V T V +L +L I P+ D + K GL++ D + +
Sbjct: 22 TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK 81
Query: 143 ISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
+S FPE + F +LL + + P + V +L DA
Sbjct: 82 Y----YYQSSSFPEAIAEIDKF----RLLGLREVERKIGAIPPETIYVHPMHSLMDACLA 133
Query: 203 LLETKYRRLPVVDADGK-----LVGIITRGNVVR 231
+ +++ RR+P++D DG+ +V ++T+ +++
Sbjct: 134 MSKSRARRIPLIDVDGETGSEMIVSVLTQYRILK 167
>pdb|1REQ|B Chain B, Methylmalonyl-Coa Mutase
pdb|1REQ|D Chain D, Methylmalonyl-Coa Mutase
pdb|2REQ|B Chain B, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|D Chain D, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|B Chain B, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|6REQ|B Chain B, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|D Chain D, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|B Chain B, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|D Chain D, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|B Chain B, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|D Chain D, Methylmalonyl-Coa Mutase Substrate Complex
pdb|5REQ|B Chain B, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|D Chain D, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|1E1C|B Chain B, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|D Chain D, Methylmalonyl-Coa Mutase H244a Mutant
Length = 637
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARL 202
D+ WK F EV+KL G M +MT V + N E A RL
Sbjct: 413 DAAWKEFQEVEKL-----GGMSKAVMTEHVTKVLDACNAERAKRL 452
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
+ MT + EL V T+ EA EIL + P+++D +LV +++ DL
Sbjct: 177 EVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227
>pdb|3K2V|A Chain A, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae.
pdb|3K2V|B Chain B, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae
Length = 149
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
V D T +E+ V T+ +AL + K + + DDD ++G+ +D DL
Sbjct: 30 VNDIXHTGDEIPHVGLQATLRDALLEITRKNLGXTAICDDDXNIIGIFTDGDL 82
>pdb|1A3Z|A Chain A, Reduced Rusticyanin At 1.9 Angstroms
Length = 155
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 157 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 184
+DSTWK T +V+ +L K +GK+ GD +T
Sbjct: 3 LDSTWKEATLPQVKAMLEKDDGKVSGDTVT 32
>pdb|3NQR|A Chain A, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|B Chain B, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|C Chain C, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
pdb|3NQR|D Chain D, A Putative Cbs Domain-Containing Protein From Salmonella
Typhimurium Lt2
Length = 127
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV-GLVSDYDLL 138
V D + + +K T+DE L++++E + FPVI +D + G++ DLL
Sbjct: 5 VRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL 59
>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein
Corc, Northeast Structural Genomics Consortium (nesg)
Target Er40
Length = 292
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV-GLVSDYDLL 138
V D + + +K T+DE L++++E + FPVI +D + G++ DLL
Sbjct: 69 VRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL 123
>pdb|2FOM|B Chain B, Dengue Virus Ns2bNS3 PROTEASE
Length = 185
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD 215
+++ WK EVQ +L+ GK + T P + + T A L P+VD
Sbjct: 84 KLEGEWKEGEEVQ-VLALEPGKNPRAVQT-KPGLFKTNTGTIGAVSLDFSPGTSGSPIVD 141
Query: 216 ADGKLVGIITRGNVVRAALQI 236
GK+VG+ G V R+ +
Sbjct: 142 KKGKVVGLYGNGVVTRSGAYV 162
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 179 VGDLMTPAP-VVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVV 230
+ +L PAP V+++ + +A L+ + + +LPVVD DG ++G++ + ++
Sbjct: 386 IAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLI 439
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 97 VVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLL 138
++K TV EA+ ++ + R+ PV+D DD ++G+V L+
Sbjct: 397 ILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLI 439
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 157 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 184
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 2 LDTTWKEATLPQVKAMLQKDTGKVSGDTVT 31
>pdb|2CAL|A Chain A, Crystal Structure Of His143met Rusticyanin
Length = 154
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 157 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 184
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 2 LDTTWKEATLPQVKAMLEKDTGKVSGDTVT 31
>pdb|1CUR|A Chain A, Reduced Rusticyanin, Nmr
Length = 155
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 157 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 184
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVT 32
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 157 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 184
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 3 LDTTWKEATLPQVKAMLQKDTGKVSGDTVT 32
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 157 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 184
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVT 32
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 157 VDSTWK--TFNEVQKLLSKTNGKMVGDLMT 184
+D+TWK T +V+ +L K GK+ GD +T
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVT 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,744,248
Number of Sequences: 62578
Number of extensions: 267085
Number of successful extensions: 1177
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 170
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)