Query 025984
Match_columns 245
No_of_seqs 201 out of 1709
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 11:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 1.5E-19 3.4E-24 145.0 11.8 124 80-235 169-292 (294)
2 COG3448 CBS-domain-containing 99.8 1.1E-18 2.4E-23 142.7 11.9 202 13-240 174-378 (382)
3 PRK15094 magnesium/cobalt effl 99.7 2.6E-17 5.6E-22 139.7 13.5 129 79-237 63-192 (292)
4 cd04603 CBS_pair_KefB_assoc Th 99.7 6E-17 1.3E-21 118.0 13.2 109 94-231 2-110 (111)
5 TIGR03520 GldE gliding motilit 99.7 6.9E-17 1.5E-21 143.2 14.2 127 78-236 186-313 (408)
6 PRK11543 gutQ D-arabinose 5-ph 99.7 4.8E-17 1E-21 140.4 12.4 121 82-232 196-318 (321)
7 cd04619 CBS_pair_6 The CBS dom 99.7 1.3E-16 2.9E-21 116.7 13.0 111 95-231 3-113 (114)
8 cd04618 CBS_pair_5 The CBS dom 99.7 1.4E-16 3E-21 113.8 11.6 94 94-231 2-97 (98)
9 PRK07807 inosine 5-monophospha 99.7 2E-16 4.3E-21 142.0 15.0 123 79-236 85-207 (479)
10 COG4109 Predicted transcriptio 99.7 8.1E-17 1.8E-21 134.7 11.1 127 81-240 186-312 (432)
11 cd04641 CBS_pair_28 The CBS do 99.7 3.2E-16 6.9E-21 115.6 12.3 119 94-232 2-120 (120)
12 cd04596 CBS_pair_DRTGG_assoc T 99.7 3.1E-16 6.7E-21 113.5 11.9 105 94-231 3-107 (108)
13 PRK10892 D-arabinose 5-phospha 99.7 2.5E-16 5.4E-21 136.2 13.5 124 81-232 200-323 (326)
14 cd04582 CBS_pair_ABC_OpuCA_ass 99.7 6.6E-16 1.4E-20 111.1 12.8 104 94-231 2-105 (106)
15 COG3620 Predicted transcriptio 99.7 1.9E-16 4E-21 118.6 9.7 123 81-235 63-185 (187)
16 cd04617 CBS_pair_4 The CBS dom 99.7 6E-16 1.3E-20 113.9 12.4 111 94-231 2-117 (118)
17 cd04600 CBS_pair_HPP_assoc Thi 99.7 8.1E-16 1.8E-20 113.8 12.9 122 94-232 3-124 (124)
18 cd04630 CBS_pair_17 The CBS do 99.7 7.8E-16 1.7E-20 112.5 12.6 111 94-231 2-113 (114)
19 cd04639 CBS_pair_26 The CBS do 99.7 6E-16 1.3E-20 112.3 11.9 109 94-231 2-110 (111)
20 cd04583 CBS_pair_ABC_OpuCA_ass 99.7 1.7E-15 3.7E-20 109.4 13.2 106 94-231 3-108 (109)
21 cd04593 CBS_pair_EriC_assoc_ba 99.7 1.5E-15 3.2E-20 111.1 12.9 112 94-232 2-115 (115)
22 cd04623 CBS_pair_10 The CBS do 99.7 1.7E-15 3.6E-20 110.0 13.1 111 94-231 2-112 (113)
23 cd04607 CBS_pair_NTP_transfera 99.7 1.9E-15 4.1E-20 110.1 13.3 109 95-231 4-112 (113)
24 PRK01862 putative voltage-gate 99.7 4.7E-16 1E-20 144.0 12.3 131 77-236 441-573 (574)
25 cd04614 CBS_pair_1 The CBS dom 99.7 1.6E-15 3.4E-20 107.8 12.3 94 94-231 2-95 (96)
26 cd04605 CBS_pair_MET2_assoc Th 99.7 2.5E-15 5.4E-20 108.8 13.6 107 94-231 3-109 (110)
27 cd04801 CBS_pair_M50_like This 99.7 9.9E-16 2.1E-20 111.8 11.4 109 94-231 2-113 (114)
28 cd04643 CBS_pair_30 The CBS do 99.7 1.3E-15 2.9E-20 111.2 11.8 115 94-232 2-116 (116)
29 cd04803 CBS_pair_15 The CBS do 99.7 2E-15 4.3E-20 111.4 12.4 121 94-232 2-122 (122)
30 cd04624 CBS_pair_11 The CBS do 99.7 2.9E-15 6.3E-20 108.8 12.9 110 94-231 2-111 (112)
31 cd04627 CBS_pair_14 The CBS do 99.7 2.2E-15 4.8E-20 111.6 12.4 119 94-230 2-121 (123)
32 cd04608 CBS_pair_PALP_assoc Th 99.7 7.5E-16 1.6E-20 114.7 9.8 113 94-233 3-124 (124)
33 TIGR01302 IMP_dehydrog inosine 99.7 2.8E-15 6E-20 134.6 15.0 188 2-234 6-201 (450)
34 cd04642 CBS_pair_29 The CBS do 99.6 3.6E-15 7.7E-20 111.0 12.9 124 94-231 2-125 (126)
35 cd04615 CBS_pair_2 The CBS dom 99.6 3.7E-15 8.1E-20 108.4 12.7 110 95-231 3-112 (113)
36 cd04636 CBS_pair_23 The CBS do 99.6 4.9E-15 1.1E-19 111.1 13.6 131 94-232 2-132 (132)
37 TIGR00400 mgtE Mg2+ transporte 99.6 2.6E-15 5.6E-20 134.9 14.1 125 79-238 127-256 (449)
38 PTZ00314 inosine-5'-monophosph 99.6 3.5E-15 7.7E-20 134.8 14.9 188 2-234 22-218 (495)
39 cd04606 CBS_pair_Mg_transporte 99.6 2.2E-15 4.7E-20 109.2 11.1 102 98-232 2-108 (109)
40 cd04631 CBS_pair_18 The CBS do 99.6 2.5E-15 5.3E-20 111.4 11.6 123 94-232 2-125 (125)
41 cd04621 CBS_pair_8 The CBS dom 99.6 4E-15 8.6E-20 112.4 12.6 132 94-231 2-134 (135)
42 cd04626 CBS_pair_13 The CBS do 99.6 4.4E-15 9.6E-20 107.8 12.4 109 94-231 2-110 (111)
43 cd04629 CBS_pair_16 The CBS do 99.6 2.6E-15 5.6E-20 109.4 11.1 112 94-231 2-113 (114)
44 cd04588 CBS_pair_CAP-ED_DUF294 99.6 6E-15 1.3E-19 106.8 13.0 108 94-231 2-109 (110)
45 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 3.8E-15 8.3E-20 108.3 11.7 111 94-231 2-113 (114)
46 cd04602 CBS_pair_IMPDH_2 This 99.6 5.1E-15 1.1E-19 108.2 12.3 106 94-231 3-113 (114)
47 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 4.6E-15 9.9E-20 107.9 12.0 111 94-231 3-113 (114)
48 PRK05567 inosine 5'-monophosph 99.6 4.6E-15 1E-19 134.4 14.6 165 27-234 36-205 (486)
49 cd04601 CBS_pair_IMPDH This cd 99.6 5.1E-15 1.1E-19 107.0 12.1 106 94-231 3-109 (110)
50 cd04595 CBS_pair_DHH_polyA_Pol 99.6 6.9E-15 1.5E-19 106.6 12.8 107 94-231 3-109 (110)
51 cd04635 CBS_pair_22 The CBS do 99.6 4E-15 8.7E-20 109.7 11.7 120 94-231 2-121 (122)
52 PRK11573 hypothetical protein; 99.6 3.8E-15 8.3E-20 132.1 13.5 131 79-237 183-314 (413)
53 cd04590 CBS_pair_CorC_HlyC_ass 99.6 6.1E-15 1.3E-19 106.9 12.2 108 94-231 2-110 (111)
54 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 9.2E-15 2E-19 105.8 13.1 109 94-231 2-110 (111)
55 cd04586 CBS_pair_BON_assoc Thi 99.6 4E-15 8.7E-20 112.1 11.3 128 94-231 3-134 (135)
56 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 5.9E-15 1.3E-19 132.5 13.9 161 30-236 41-205 (475)
57 cd04640 CBS_pair_27 The CBS do 99.6 4.3E-15 9.4E-20 110.6 11.1 114 94-231 2-125 (126)
58 cd04610 CBS_pair_ParBc_assoc T 99.6 9.1E-15 2E-19 105.2 12.2 104 94-231 3-106 (107)
59 cd04587 CBS_pair_CAP-ED_DUF294 99.6 8E-15 1.7E-19 106.6 11.9 111 94-231 2-112 (113)
60 cd04632 CBS_pair_19 The CBS do 99.6 9.3E-15 2E-19 108.9 12.4 124 94-231 2-127 (128)
61 cd04594 CBS_pair_EriC_assoc_ar 99.6 9.1E-15 2E-19 105.1 11.8 100 96-231 4-103 (104)
62 cd04599 CBS_pair_GGDEF_assoc2 99.6 1.2E-14 2.6E-19 104.2 12.2 103 94-231 2-104 (105)
63 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 1.3E-14 2.8E-19 105.0 12.2 109 94-231 2-110 (111)
64 cd04620 CBS_pair_7 The CBS dom 99.6 1.4E-14 3.1E-19 105.7 12.3 110 94-231 2-114 (115)
65 cd04585 CBS_pair_ACT_assoc2 Th 99.6 1.6E-14 3.5E-19 106.1 12.6 120 94-231 2-121 (122)
66 cd04622 CBS_pair_9 The CBS dom 99.6 1.8E-14 3.8E-19 104.7 12.5 111 94-231 2-112 (113)
67 cd04800 CBS_pair_CAP-ED_DUF294 99.6 2.1E-14 4.6E-19 104.1 12.4 109 94-231 2-110 (111)
68 PRK07107 inosine 5-monophospha 99.6 7.5E-15 1.6E-19 132.6 12.0 119 84-233 95-219 (502)
69 cd04637 CBS_pair_24 The CBS do 99.6 1.6E-14 3.5E-19 106.5 11.8 121 94-232 2-122 (122)
70 COG2905 Predicted signal-trans 99.6 4E-15 8.7E-20 131.6 9.9 127 78-234 144-270 (610)
71 cd04589 CBS_pair_CAP-ED_DUF294 99.6 2.3E-14 5E-19 103.9 12.4 110 94-232 2-111 (111)
72 PLN02274 inosine-5'-monophosph 99.6 2.9E-14 6.3E-19 129.0 15.5 113 89-235 106-223 (505)
73 COG1253 TlyC Hemolysins and re 99.6 2.6E-14 5.7E-19 127.7 14.7 130 79-238 202-332 (429)
74 cd04625 CBS_pair_12 The CBS do 99.6 3.2E-14 6.9E-19 103.3 12.2 110 94-231 2-111 (112)
75 cd04609 CBS_pair_PALP_assoc2 T 99.6 2.9E-14 6.2E-19 102.9 11.4 109 94-232 2-110 (110)
76 cd04633 CBS_pair_20 The CBS do 99.6 2.4E-14 5.2E-19 105.4 11.1 120 94-232 2-121 (121)
77 TIGR00393 kpsF KpsF/GutQ famil 99.6 1.6E-14 3.6E-19 121.4 11.5 114 82-225 154-268 (268)
78 cd04584 CBS_pair_ACT_assoc Thi 99.6 5.2E-14 1.1E-18 103.5 11.6 119 94-231 2-120 (121)
79 cd04591 CBS_pair_EriC_assoc_eu 99.6 4.4E-14 9.5E-19 102.0 10.6 100 94-232 3-105 (105)
80 cd02205 CBS_pair The CBS domai 99.5 1.4E-13 3.1E-18 98.9 12.7 111 94-231 2-112 (113)
81 cd04802 CBS_pair_3 The CBS dom 99.5 1.5E-13 3.3E-18 99.7 12.9 110 94-231 2-111 (112)
82 cd04638 CBS_pair_25 The CBS do 99.5 1.5E-13 3.2E-18 98.9 12.5 104 94-231 2-105 (106)
83 TIGR01137 cysta_beta cystathio 99.5 7.5E-14 1.6E-18 126.0 12.9 123 79-233 331-453 (454)
84 COG4536 CorB Putative Mg2+ and 99.5 6.8E-14 1.5E-18 118.4 10.3 132 79-238 196-328 (423)
85 cd04598 CBS_pair_GGDEF_assoc T 99.5 2E-13 4.2E-18 100.2 11.6 113 94-231 2-118 (119)
86 cd04634 CBS_pair_21 The CBS do 99.5 2.2E-13 4.7E-18 103.8 12.1 133 94-231 2-142 (143)
87 PRK14869 putative manganese-de 99.5 3.1E-13 6.7E-18 124.6 13.1 151 82-234 67-304 (546)
88 COG0517 FOG: CBS domain [Gener 99.5 1E-12 2.3E-17 95.8 12.7 108 94-230 8-117 (117)
89 COG2239 MgtE Mg/Co/Ni transpor 99.5 4.3E-13 9.3E-18 119.0 11.7 125 80-239 129-258 (451)
90 KOG0474 Cl- channel CLC-7 and 99.4 1.6E-13 3.4E-18 122.6 7.0 170 55-233 561-746 (762)
91 cd04592 CBS_pair_EriC_assoc_eu 99.4 5.3E-12 1.1E-16 95.2 10.5 108 94-217 2-118 (133)
92 COG4535 CorC Putative Mg2+ and 99.4 1.2E-12 2.6E-17 104.4 7.1 129 79-237 63-192 (293)
93 PF00571 CBS: CBS domain CBS d 99.3 1.5E-11 3.3E-16 78.5 6.9 56 179-234 1-56 (57)
94 PF00571 CBS: CBS domain CBS d 99.1 1.8E-10 3.9E-15 73.5 5.5 54 85-140 1-54 (57)
95 PRK10070 glycine betaine trans 99.1 1.8E-09 3.9E-14 95.6 13.3 121 83-236 274-395 (400)
96 TIGR01186 proV glycine betaine 99.1 2.3E-09 5.1E-14 93.7 13.6 109 95-236 252-360 (363)
97 KOG1764 5'-AMP-activated prote 99.1 1.8E-09 3.9E-14 94.8 11.5 125 94-237 238-362 (381)
98 KOG2550 IMP dehydrogenase/GMP 99.0 7.4E-10 1.6E-14 95.0 8.1 107 94-232 117-226 (503)
99 TIGR00400 mgtE Mg2+ transporte 98.7 4.6E-09 1E-13 94.6 1.8 165 31-238 139-310 (449)
100 cd04603 CBS_pair_KefB_assoc Th 98.7 6.2E-08 1.4E-12 70.1 6.8 101 34-139 4-110 (111)
101 KOG0475 Cl- channel CLC-3 and 98.7 2.9E-07 6.3E-12 83.2 11.5 162 55-234 524-695 (696)
102 cd04619 CBS_pair_6 The CBS dom 98.6 1.9E-07 4E-12 67.9 6.6 103 35-139 5-113 (114)
103 cd04597 CBS_pair_DRTGG_assoc2 98.5 2.5E-07 5.4E-12 67.5 6.0 55 83-139 58-112 (113)
104 PRK14869 putative manganese-de 98.5 3.4E-08 7.4E-13 91.3 1.5 142 81-232 244-391 (546)
105 COG2524 Predicted transcriptio 98.5 2.8E-07 6.1E-12 74.9 6.0 60 175-235 170-229 (294)
106 cd04618 CBS_pair_5 The CBS dom 98.5 4.8E-07 1E-11 64.2 6.7 94 32-139 2-97 (98)
107 cd04597 CBS_pair_DRTGG_assoc2 98.5 3.6E-07 7.8E-12 66.6 6.1 55 177-231 58-112 (113)
108 cd04596 CBS_pair_DRTGG_assoc T 98.5 5.8E-07 1.3E-11 64.5 7.0 103 32-139 3-107 (108)
109 COG3448 CBS-domain-containing 98.5 2.7E-07 5.9E-12 76.5 5.7 62 171-232 239-300 (382)
110 PRK05567 inosine 5'-monophosph 98.5 1.2E-06 2.6E-11 79.8 10.3 162 31-231 95-264 (486)
111 COG3620 Predicted transcriptio 98.4 4.5E-07 9.8E-12 68.5 6.0 61 176-237 64-124 (187)
112 cd04604 CBS_pair_KpsF_GutQ_ass 98.4 1.1E-06 2.3E-11 63.4 7.4 106 31-139 2-113 (114)
113 cd04620 CBS_pair_7 The CBS dom 98.4 7.6E-07 1.7E-11 64.5 6.5 103 34-139 4-114 (115)
114 cd04630 CBS_pair_17 The CBS do 98.4 7.3E-07 1.6E-11 64.6 6.3 104 33-139 3-113 (114)
115 cd04617 CBS_pair_4 The CBS dom 98.4 9.7E-07 2.1E-11 64.5 6.2 106 33-139 3-117 (118)
116 cd04801 CBS_pair_M50_like This 98.4 8.8E-07 1.9E-11 64.1 5.7 104 33-139 3-113 (114)
117 cd04613 CBS_pair_SpoIVFB_EriC_ 98.4 1.2E-06 2.6E-11 63.1 6.1 104 33-139 3-113 (114)
118 cd04614 CBS_pair_1 The CBS dom 98.3 2.5E-06 5.3E-11 60.2 7.5 92 33-139 3-95 (96)
119 cd04600 CBS_pair_HPP_assoc Thi 98.3 1.3E-06 2.8E-11 64.1 6.0 56 82-139 68-123 (124)
120 cd04623 CBS_pair_10 The CBS do 98.3 2E-06 4.3E-11 61.8 6.7 103 34-139 4-112 (113)
121 TIGR01303 IMP_DH_rel_1 IMP deh 98.3 1.1E-05 2.5E-10 72.9 13.0 100 32-140 97-201 (475)
122 cd04611 CBS_pair_PAS_GGDEF_DUF 98.3 1.9E-06 4.2E-11 61.7 6.6 103 33-139 3-110 (111)
123 PRK07107 inosine 5-monophospha 98.3 2E-06 4.3E-11 78.3 8.0 102 34-140 108-218 (502)
124 cd04593 CBS_pair_EriC_assoc_ba 98.3 2.2E-06 4.8E-11 62.1 6.8 103 34-139 4-114 (115)
125 cd04582 CBS_pair_ABC_OpuCA_ass 98.3 2.9E-06 6.3E-11 60.4 7.3 97 33-139 3-105 (106)
126 PRK11543 gutQ D-arabinose 5-ph 98.3 2.1E-06 4.4E-11 74.2 7.5 104 33-140 209-318 (321)
127 PRK07807 inosine 5-monophospha 98.3 5.7E-06 1.2E-10 74.9 10.5 101 31-140 97-203 (479)
128 cd04583 CBS_pair_ABC_OpuCA_ass 98.3 2.1E-06 4.6E-11 61.3 6.3 99 33-139 4-108 (109)
129 smart00116 CBS Domain in cysta 98.3 3.5E-06 7.7E-11 50.4 6.2 47 187-233 2-48 (49)
130 cd04599 CBS_pair_GGDEF_assoc2 98.3 3.4E-06 7.3E-11 59.9 7.0 99 34-138 4-103 (105)
131 cd04607 CBS_pair_NTP_transfera 98.3 2.2E-06 4.8E-11 61.9 6.0 55 82-138 57-111 (113)
132 cd04627 CBS_pair_14 The CBS do 98.3 2.8E-06 6E-11 62.4 6.5 50 87-138 72-121 (123)
133 cd04601 CBS_pair_IMPDH This cd 98.3 4.7E-06 1E-10 59.5 7.5 99 33-139 4-109 (110)
134 cd04622 CBS_pair_9 The CBS dom 98.3 4.6E-06 1E-10 60.0 7.5 105 33-139 3-112 (113)
135 cd04602 CBS_pair_IMPDH_2 This 98.3 3E-06 6.5E-11 61.4 6.5 103 33-139 4-113 (114)
136 cd04641 CBS_pair_28 The CBS do 98.2 4.5E-06 9.8E-11 61.0 7.3 49 186-234 2-50 (120)
137 cd04595 CBS_pair_DHH_polyA_Pol 98.2 2.5E-06 5.4E-11 61.2 5.8 101 33-139 4-109 (110)
138 cd04589 CBS_pair_CAP-ED_DUF294 98.2 2.7E-06 6E-11 61.1 5.9 102 34-139 4-110 (111)
139 cd04592 CBS_pair_EriC_assoc_eu 98.2 5.4E-06 1.2E-10 62.3 7.7 50 186-235 2-51 (133)
140 cd04633 CBS_pair_20 The CBS do 98.2 2.2E-06 4.7E-11 62.6 5.4 56 81-139 65-120 (121)
141 cd04605 CBS_pair_MET2_assoc Th 98.2 2.8E-06 6E-11 60.9 5.7 100 33-139 4-109 (110)
142 cd04587 CBS_pair_CAP-ED_DUF294 98.2 2.4E-06 5.2E-11 61.5 5.4 105 33-139 3-112 (113)
143 TIGR03520 GldE gliding motilit 98.2 3.1E-06 6.6E-11 75.5 7.0 103 31-141 201-310 (408)
144 cd04585 CBS_pair_ACT_assoc2 Th 98.2 3.1E-06 6.7E-11 61.6 5.9 56 82-139 66-121 (122)
145 cd04606 CBS_pair_Mg_transporte 98.2 3.5E-06 7.6E-11 60.5 6.0 57 82-140 52-108 (109)
146 cd04610 CBS_pair_ParBc_assoc T 98.2 3.5E-06 7.6E-11 60.0 5.9 98 33-139 4-106 (107)
147 cd04640 CBS_pair_27 The CBS do 98.2 2.9E-06 6.3E-11 62.7 5.5 104 34-139 4-125 (126)
148 cd04615 CBS_pair_2 The CBS dom 98.2 3.9E-06 8.6E-11 60.4 6.0 102 35-139 5-112 (113)
149 PLN02274 inosine-5'-monophosph 98.2 4.1E-06 8.9E-11 76.4 7.3 108 29-142 106-222 (505)
150 cd04626 CBS_pair_13 The CBS do 98.2 3.6E-06 7.8E-11 60.5 5.7 102 33-139 3-110 (111)
151 cd04803 CBS_pair_15 The CBS do 98.2 4.2E-06 9.2E-11 61.1 6.1 57 81-139 65-121 (122)
152 cd04639 CBS_pair_26 The CBS do 98.2 3.6E-06 7.8E-11 60.4 5.6 55 83-139 56-110 (111)
153 cd04635 CBS_pair_22 The CBS do 98.2 3.9E-06 8.4E-11 61.3 5.7 57 81-139 65-121 (122)
154 cd04631 CBS_pair_18 The CBS do 98.2 4E-06 8.7E-11 61.5 5.6 56 82-139 69-124 (125)
155 cd04625 CBS_pair_12 The CBS do 98.2 4.1E-06 8.8E-11 60.2 5.5 55 82-139 57-111 (112)
156 cd04590 CBS_pair_CorC_HlyC_ass 98.2 3.5E-06 7.5E-11 60.5 5.1 101 33-139 3-110 (111)
157 KOG1764 5'-AMP-activated prote 98.2 1.3E-05 2.8E-10 70.7 9.5 121 94-235 163-287 (381)
158 cd04800 CBS_pair_CAP-ED_DUF294 98.2 6.7E-06 1.4E-10 59.0 6.5 103 33-139 3-110 (111)
159 cd04802 CBS_pair_3 The CBS dom 98.1 8E-06 1.7E-10 58.7 6.4 103 34-139 4-111 (112)
160 cd04621 CBS_pair_8 The CBS dom 98.1 7.2E-06 1.6E-10 61.6 6.2 55 82-139 80-134 (135)
161 cd04584 CBS_pair_ACT_assoc Thi 98.1 6E-06 1.3E-10 60.2 5.5 56 81-139 65-120 (121)
162 cd04608 CBS_pair_PALP_assoc Th 98.1 1.7E-05 3.8E-10 58.6 7.9 51 185-235 2-52 (124)
163 cd04586 CBS_pair_BON_assoc Thi 98.1 4.8E-06 1E-10 62.3 4.9 55 82-139 80-134 (135)
164 PTZ00314 inosine-5'-monophosph 98.1 8.8E-06 1.9E-10 74.1 7.4 104 32-141 105-217 (495)
165 cd04588 CBS_pair_CAP-ED_DUF294 98.1 8.5E-06 1.8E-10 58.3 5.9 55 83-139 55-109 (110)
166 cd04591 CBS_pair_EriC_assoc_eu 98.1 1.1E-05 2.3E-10 57.8 6.3 90 32-139 3-104 (105)
167 cd04629 CBS_pair_16 The CBS do 98.1 5.9E-06 1.3E-10 59.5 5.0 55 82-139 59-113 (114)
168 cd04642 CBS_pair_29 The CBS do 98.1 1.1E-05 2.5E-10 59.4 6.6 51 87-139 75-125 (126)
169 cd04636 CBS_pair_23 The CBS do 98.1 7.9E-06 1.7E-10 60.8 5.7 53 84-139 79-131 (132)
170 PRK10892 D-arabinose 5-phospha 98.1 1E-05 2.2E-10 70.1 7.0 59 176-234 201-261 (326)
171 PRK15094 magnesium/cobalt effl 98.1 6.5E-06 1.4E-10 70.1 5.5 104 32-141 78-188 (292)
172 cd04612 CBS_pair_SpoIVFB_EriC_ 98.1 1.1E-05 2.4E-10 57.7 5.9 102 34-139 4-110 (111)
173 TIGR01302 IMP_dehydrog inosine 98.1 3.9E-05 8.5E-10 69.3 10.6 102 32-141 89-200 (450)
174 cd04643 CBS_pair_30 The CBS do 98.0 2.1E-05 4.5E-10 56.8 7.2 50 186-235 2-51 (116)
175 cd04624 CBS_pair_11 The CBS do 98.0 2.4E-05 5.3E-10 56.1 7.5 50 186-235 2-51 (112)
176 cd04637 CBS_pair_24 The CBS do 98.0 1E-05 2.3E-10 59.1 5.6 55 83-139 67-121 (122)
177 cd04594 CBS_pair_EriC_assoc_ar 98.0 1.3E-05 2.7E-10 57.1 5.6 53 84-139 51-103 (104)
178 smart00116 CBS Domain in cysta 98.0 2E-05 4.2E-10 47.0 5.7 46 95-140 2-47 (49)
179 TIGR03415 ABC_choXWV_ATP choli 98.0 2.9E-05 6.4E-10 68.5 8.5 112 79-235 270-381 (382)
180 cd04632 CBS_pair_19 The CBS do 98.0 3.5E-05 7.7E-10 56.8 7.7 49 186-234 2-50 (128)
181 PRK01862 putative voltage-gate 98.0 1.9E-05 4E-10 73.6 7.1 105 33-140 457-569 (574)
182 TIGR01137 cysta_beta cystathio 97.9 3.2E-05 7E-10 70.0 7.9 62 174-235 332-393 (454)
183 COG4175 ProV ABC-type proline/ 97.9 2.6E-05 5.7E-10 65.9 6.4 115 79-235 270-384 (386)
184 COG0517 FOG: CBS domain [Gener 97.9 3.4E-05 7.4E-10 55.7 5.8 104 31-138 7-117 (117)
185 TIGR00393 kpsF KpsF/GutQ famil 97.9 3.1E-05 6.8E-10 65.0 6.2 58 177-234 155-213 (268)
186 COG2905 Predicted signal-trans 97.9 3.8E-05 8.3E-10 69.1 6.7 104 34-141 160-269 (610)
187 cd02205 CBS_pair The CBS domai 97.8 9.4E-05 2E-09 52.3 7.6 51 186-236 2-52 (113)
188 cd04609 CBS_pair_PALP_assoc2 T 97.8 8.2E-05 1.8E-09 52.9 6.7 49 186-235 2-50 (110)
189 cd04598 CBS_pair_GGDEF_assoc T 97.8 4.7E-05 1E-09 55.2 5.3 57 81-139 59-118 (119)
190 KOG0476 Cl- channel CLC-2 and 97.8 0.0004 8.7E-09 64.6 11.9 83 51-141 562-646 (931)
191 COG4536 CorB Putative Mg2+ and 97.8 7.9E-05 1.7E-09 64.1 6.9 104 33-140 212-322 (423)
192 cd04634 CBS_pair_21 The CBS do 97.7 7.8E-05 1.7E-09 56.4 5.7 55 82-139 88-142 (143)
193 PRK11573 hypothetical protein; 97.7 6.7E-05 1.5E-09 67.0 6.0 106 31-140 197-309 (413)
194 cd04638 CBS_pair_25 The CBS do 97.7 0.0001 2.2E-09 52.3 5.3 54 83-139 52-105 (106)
195 COG1253 TlyC Hemolysins and re 97.6 0.00019 4E-09 64.6 7.0 105 30-140 215-326 (429)
196 COG4109 Predicted transcriptio 97.4 0.00024 5.2E-09 60.7 5.5 62 79-142 245-306 (432)
197 COG2239 MgtE Mg/Co/Ni transpor 97.3 0.00034 7.3E-09 62.8 4.4 59 81-141 194-252 (451)
198 TIGR01186 proV glycine betaine 97.1 0.0011 2.4E-08 58.2 6.0 55 84-141 303-357 (363)
199 KOG2550 IMP dehydrogenase/GMP 97.0 0.0095 2.1E-07 52.1 10.2 104 33-140 118-226 (503)
200 PRK10070 glycine betaine trans 96.6 0.0043 9.2E-08 55.3 6.0 56 84-142 338-393 (400)
201 COG1125 OpuBA ABC-type proline 95.9 0.12 2.5E-06 43.1 9.9 110 95-232 189-308 (309)
202 COG4535 CorC Putative Mg2+ and 95.4 0.029 6.2E-07 45.8 4.7 57 81-140 131-187 (293)
203 KOG0474 Cl- channel CLC-7 and 94.9 0.047 1E-06 50.4 5.1 55 84-140 691-745 (762)
204 KOG2118 Predicted membrane pro 94.5 0.038 8.2E-07 50.6 3.7 129 77-234 198-328 (498)
205 TIGR03415 ABC_choXWV_ATP choli 93.4 0.16 3.4E-06 45.1 5.4 53 84-141 327-379 (382)
206 KOG0476 Cl- channel CLC-2 and 89.5 0.47 1E-05 45.0 4.2 62 176-237 587-650 (931)
207 KOG0475 Cl- channel CLC-3 and 89.3 0.95 2.1E-05 42.1 5.8 57 81-140 637-693 (696)
208 COG4175 ProV ABC-type proline/ 89.1 0.78 1.7E-05 39.5 4.9 47 94-141 336-382 (386)
209 COG1125 OpuBA ABC-type proline 88.4 0.99 2.1E-05 37.8 4.9 61 79-139 245-307 (309)
210 cd02958 UAS UAS family; UAS is 72.2 12 0.00025 26.8 5.2 63 176-238 42-112 (114)
211 PRK11388 DNA-binding transcrip 68.7 16 0.00034 34.8 6.6 120 84-226 42-163 (638)
212 smart00594 UAS UAS domain. 61.2 18 0.00039 26.2 4.4 58 176-233 52-121 (122)
213 PF05198 IF3_N: Translation in 57.9 30 0.00065 23.1 4.6 27 209-235 13-39 (76)
214 COG2216 KdpB High-affinity K+ 53.8 20 0.00043 33.2 4.1 40 194-234 413-452 (681)
215 PF14827 Cache_3: Sensory doma 45.9 24 0.00052 25.3 2.9 17 210-226 93-109 (116)
216 PF05198 IF3_N: Translation in 44.5 36 0.00079 22.7 3.4 25 116-140 12-36 (76)
217 COG2216 KdpB High-affinity K+ 44.1 46 0.001 30.9 4.9 37 102-139 413-449 (681)
218 PF14827 Cache_3: Sensory doma 41.8 29 0.00062 24.9 2.8 19 117-135 92-110 (116)
219 COG3290 CitA Signal transducti 36.8 1E+02 0.0022 28.7 6.0 98 100-237 71-169 (537)
220 PHA00673 acetyltransferase dom 35.8 1.6E+02 0.0034 22.6 6.1 33 194-226 40-72 (154)
221 TIGR03278 methan_mark_10 putat 32.9 2.3E+02 0.0051 25.4 7.6 80 116-236 306-391 (404)
222 PF02743 Cache_1: Cache domain 32.6 41 0.00089 22.0 2.3 18 210-227 18-35 (81)
223 PF13365 Trypsin_2: Trypsin-li 32.2 35 0.00075 23.8 1.9 18 206-223 103-120 (120)
224 PF14044 NETI: NETI protein 29.7 71 0.0015 20.0 2.6 23 189-211 3-25 (57)
225 smart00481 POLIIIAc DNA polyme 27.0 91 0.002 19.6 3.1 36 191-227 12-47 (67)
226 PRK00137 rplI 50S ribosomal pr 26.8 1.2E+02 0.0027 22.9 4.2 23 214-236 83-105 (147)
227 PF13098 Thioredoxin_2: Thiore 25.8 60 0.0013 22.5 2.3 36 198-233 73-112 (112)
228 COG0241 HisB Histidinol phosph 24.0 2E+02 0.0042 22.8 4.9 46 191-236 31-76 (181)
229 COG0290 InfC Translation initi 23.5 1.1E+02 0.0023 24.0 3.2 28 115-142 17-44 (176)
230 PF13673 Acetyltransf_10: Acet 23.4 1.5E+02 0.0033 20.3 4.0 33 194-227 30-62 (117)
231 PF13596 PAS_10: PAS domain; P 23.4 81 0.0018 21.7 2.5 17 116-132 83-99 (106)
232 cd03015 PRX_Typ2cys Peroxiredo 22.9 2E+02 0.0044 21.9 4.9 31 208-238 120-158 (173)
233 PRK03972 ribosomal biogenesis 22.2 2E+02 0.0043 23.3 4.7 37 187-223 29-66 (208)
234 TIGR00158 L9 ribosomal protein 20.9 2E+02 0.0042 21.9 4.3 23 214-236 83-105 (148)
235 cd03409 Chelatase_Class_II Cla 20.4 2.8E+02 0.0061 18.6 4.9 46 193-239 44-89 (101)
236 PF00944 Peptidase_S3: Alphavi 20.2 99 0.0021 23.2 2.4 22 114-135 105-126 (158)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.82 E-value=1.5e-19 Score=145.04 Aligned_cols=124 Identities=33% Similarity=0.481 Sum_probs=113.1
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
....+|+++|++ ++.++.+++|+.++.++|.+++++++||+|++ +++|++|..|+..+...
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~---------------- 229 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIAN---------------- 229 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHc----------------
Confidence 355689999999 89999999999999999999999999999965 99999999999986421
Q ss_pred cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
......|.++|.++++++..|+.+.+|+++|..++..++.|+|.+|+++|+||+.|+++.+..
T Consensus 230 -------------g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 230 -------------GNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred -------------CCccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 224788999999999999999999999999999999999999999999999999999998864
No 2
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.79 E-value=1.1e-18 Score=142.66 Aligned_cols=202 Identities=24% Similarity=0.317 Sum_probs=144.7
Q ss_pred ccccCCCCCCCCCCcccccc--cccccCCCCchhhhhhhhccCCccc-ccccccccccccccccCCCCCCCCcceecccc
Q 025984 13 ARLRAPPAGRTSGRTSFALQ--LPCLLLSRPGCRVFSVLATSSDRVS-ALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (245)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im 89 (245)
.+=.||-+|..++-+.-++. -|.....-...++-..+.++...+. .+.+...+-.+..+.. ....+..++-.+||
T Consensus 174 ~~r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa--~~R~~~~LtcadIM 251 (382)
T COG3448 174 TRRTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQA--LRRRMGELTCADIM 251 (382)
T ss_pred hcCCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHH--HHHHhccccHHHhc
Confidence 34455555555554333332 2233334444555555556655322 2222221111110100 12345778999999
Q ss_pred cCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHH
Q 025984 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 169 (245)
Q Consensus 90 ~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
++ +++++..++++.++.++|.++++..+||+|++.+++|+|+..|+.+.. .|..|+.+
T Consensus 252 Sr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a------------------~~~p~qrl-- 309 (382)
T COG3448 252 SR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA------------------RPSPFQRL-- 309 (382)
T ss_pred Cc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc------------------CcchHHHh--
Confidence 99 999999999999999999999999999999999999999999999742 12222222
Q ss_pred HHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240 (245)
Q Consensus 170 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~ 240 (245)
.......++.+|++...++.++++..+++..|.+.+.+++||+|++|+++||||..|++.++.......
T Consensus 310 --r~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~~~ 378 (382)
T COG3448 310 --RFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWSQH 378 (382)
T ss_pred --hccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHHHh
Confidence 234567899999998999999999999999999999999999999999999999999999988766543
No 3
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.74 E-value=2.6e-17 Score=139.69 Aligned_cols=129 Identities=22% Similarity=0.372 Sum_probs=111.9
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
.+...+|+++|+++.++.+++.++++.++.+.+.+++++.+||++++ ++++|+|+.+|++.+...
T Consensus 63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~-------------- 128 (292)
T PRK15094 63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-------------- 128 (292)
T ss_pred ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc--------------
Confidence 56788999999997789999999999999999999999999999876 789999999999864210
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
......+.++|.+ +.++++++++.++++.|++.+.+.+||+|++|.++|+||.+|+++++....
T Consensus 129 ---------------~~~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 129 ---------------DAEAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred ---------------cCCcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence 0012346778876 668999999999999999999999999999999999999999999998653
No 4
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.74 E-value=6e-17 Score=118.02 Aligned_cols=109 Identities=26% Similarity=0.350 Sum_probs=95.2
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.+++.+.++|+|++|+++|+|+..|+..... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~~ 52 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-----------------------------ND 52 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-----------------------------cc
Confidence 4678899999999999999889999999998899999999999986310 00
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..++.++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++
T Consensus 53 ~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 53 YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 1135688889888899999999999999999999999999998899999999999985
No 5
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.73 E-value=6.9e-17 Score=143.18 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=112.1
Q ss_pred CCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcc
Q 025984 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (245)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~ 156 (245)
-.+.+++|+++|+|+.++.+++.++++.++.+.+.+++++++||++++ ++++|+|+.+|++....
T Consensus 186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~-------------- 251 (408)
T TIGR03520 186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN-------------- 251 (408)
T ss_pred hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--------------
Confidence 367889999999998899999999999999999999999999999875 68999999999985421
Q ss_pred ccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
....++.++|.+ +.+|++++++.++++.|++.+.+.++|+|++|..+|+||.+|+++++...
T Consensus 252 -----------------~~~~~l~~~~~~-~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 252 -----------------KKNFDWQSLLRE-PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred -----------------cCCCCHHHHcCC-CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence 012356777765 88999999999999999999999999999999999999999999999754
No 6
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.72 E-value=4.8e-17 Score=140.35 Aligned_cols=121 Identities=25% Similarity=0.286 Sum_probs=107.5
Q ss_pred cceecccccCCCc--eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 82 ~~~v~~im~~~~~--~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
..+|+++|++ + ++++++++++.++.+.|.+++...+||+|++|+++|+|+..|+.+.....
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~--------------- 258 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG--------------- 258 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC---------------
Confidence 6799999998 6 99999999999999999988889999999999999999999998642110
Q ss_pred cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.....++.++|.+++.++.+++++.++++.|.+.+..++||+|++|+++|+||++|++++
T Consensus 259 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 259 -------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred -------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 012456889999999999999999999999999999999999988999999999999875
No 7
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.72 E-value=1.3e-16 Score=116.68 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=96.3
Q ss_pred eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (245)
Q Consensus 95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
+.++++++++.++.+.|.+++...+||+|++|+++|+|+..|+.++..... ...
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~--------------------------~~~ 56 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG--------------------------GPG 56 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC--------------------------CCc
Confidence 578899999999999999999999999999999999999999986421100 011
Q ss_pred cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
...++.++|..+++++.+++++.++++.|.+.+..++||+|++|+++|+|+++|+++
T Consensus 57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 246788899888999999999999999999999999999998899999999999975
No 8
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.71 E-value=1.4e-16 Score=113.82 Aligned_cols=94 Identities=32% Similarity=0.465 Sum_probs=86.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
++.++++++++.++.+.|.+++++.+||+|++ |+++|+|+..|+.++.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence 47899999999999999999999999999975 8999999999998631
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR 231 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGiIt~~dll~ 231 (245)
. +.++.+++++.+++++|.+++.+++||+|++ |+++|+||.+|++.
T Consensus 51 ---~----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 51 ---R----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred ---e----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 0 7789999999999999999999999999987 89999999999975
No 9
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.71 E-value=2e-16 Score=142.02 Aligned_cols=123 Identities=29% Similarity=0.423 Sum_probs=110.4
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
.+..+++.++|.. ++.++++++++.++.+.|.+++++.+||+|++|+++|+|+.+|+....
T Consensus 85 ~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------------- 145 (479)
T PRK07807 85 VVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------------- 145 (479)
T ss_pred HHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc-----------------
Confidence 4456788899988 899999999999999999999999999999999999999999986421
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
...++.++|+.+++++++++++.+++++|.+++.+++||+|++|+++|+||++||++.....
T Consensus 146 ----------------~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 146 ----------------RFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred ----------------cCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 13568899999999999999999999999999999999999889999999999999876543
No 10
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.71 E-value=8.1e-17 Score=134.71 Aligned_cols=127 Identities=31% Similarity=0.519 Sum_probs=117.7
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
+-.+|.|+|+|.++...+..++++.+..++..+.++.+|||+|...+++|+|+.+|+...
T Consensus 186 dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~-------------------- 245 (432)
T COG4109 186 DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK-------------------- 245 (432)
T ss_pred heeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC--------------------
Confidence 456999999988889999999999999999999999999999999999999999999864
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~ 240 (245)
..+.++..+|+++|.+|.+.+++..+.+.|.=.+++.+||+|++++++|+||++|+++.+...+.+.
T Consensus 246 -------------~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qp 312 (432)
T COG4109 246 -------------KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQP 312 (432)
T ss_pred -------------CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCC
Confidence 3478999999999999999999999999999999999999999999999999999999988766554
No 11
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.70 E-value=3.2e-16 Score=115.62 Aligned_cols=119 Identities=21% Similarity=0.379 Sum_probs=92.6
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+..+...... ..+. .....
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~------------~~~~--~~~~~---- 63 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY------------NNLD--LTVGE---- 63 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc------------cccc--CCHHH----
Confidence 57889999999999999999999999999988999999999999875310000 0000 00000
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.....+.|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 64 --~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 64 --ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred --HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 001223455567899999999999999999999999999988999999999999863
No 12
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.70 E-value=3.1e-16 Score=113.48 Aligned_cols=105 Identities=31% Similarity=0.510 Sum_probs=95.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++..|+....
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------- 50 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------------------------------- 50 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc--------------------------------
Confidence 678899999999999999998889999999989999999999997531
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
...++.++|...+.++.+++++.++++.|.+.+...+||++++|+++|+||..|+++
T Consensus 51 -~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 51 -PDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -ccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 145788889888999999999999999999999999999998899999999999975
No 13
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.70 E-value=2.5e-16 Score=136.23 Aligned_cols=124 Identities=27% Similarity=0.375 Sum_probs=106.4
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
..++|+++|.+..+++++++++++.++.+.|.+++.+.+||+|++|+++|+|+..|+.++... +.
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~-~~-------------- 264 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM-GI-------------- 264 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-CC--------------
Confidence 677999999852268999999999999999998888888888989999999999999864210 00
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.....++.++|.+++.++.+++++.+++++|.+++.+++||++ +|+++|+||++|++++
T Consensus 265 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 265 ------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 0124679999999999999999999999999999999999998 6899999999999875
No 14
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.69 E-value=6.6e-16 Score=111.13 Aligned_cols=104 Identities=25% Similarity=0.426 Sum_probs=93.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++++++++.++.++.+.|.+++.+.+||+|++|+++|+++..|+....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 477899999999999999988999999999889999999999998641
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
..++.++|.+.+.++.+++++.++++.|.+.+...+||+|++|+++|+||++|+++
T Consensus 50 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 50 --GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred --ccchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 23467788877888999999999999999999999999998899999999999975
No 15
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.69 E-value=1.9e-16 Score=118.56 Aligned_cols=123 Identities=24% Similarity=0.369 Sum_probs=105.7
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
..+++..+|+. +++.+.+++++.+++++|.+++++.+||+++ |+++|-|+..++.++.....
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~--------------- 124 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM--------------- 124 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---------------
Confidence 56789999999 8999999999999999999999999999997 78999999999998642111
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
+...+..+.++|...+++|+++.++..+.+++..++ .+.|++ +|+++||||+.|+++.+..
T Consensus 125 -----------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e-~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 125 -----------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE-NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -----------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe-CCceEEEEeHHHHHHHHhc
Confidence 112356789999999999999999999999987765 466775 8999999999999998764
No 16
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.69 E-value=6e-16 Score=113.88 Aligned_cols=111 Identities=30% Similarity=0.373 Sum_probs=94.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|..++...+||+|++|+++|+|+..|+.++..... .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------~ 54 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------D 54 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---------------------------C
Confidence 4788999999999999999899999999998899999999999987531100 0
Q ss_pred ccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD---GKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~---g~~vGiIt~~dll~ 231 (245)
....++.++|.. .+.++.+++++.+++++|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 124567778874 68899999999999999999999999999876 69999999999874
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=8.1e-16 Score=113.82 Aligned_cols=122 Identities=34% Similarity=0.600 Sum_probs=98.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+++++.+||++++|+++|+|+..|+......... .+.+..+ + ..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~-----------~~~~~~~----~--~~ 65 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGR-----------RPLRGRL----R--GR 65 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhccccc-----------chhhhhh----h--cc
Confidence 67889999999999999999999999999988999999999999865321100 0000000 0 01
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|...+.++.+++++.+++++|.+.+.+.+||+|++|+++|+||.+|++++
T Consensus 66 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 66 DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 23457888998889999999999999999999999999999988999999999999863
No 18
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=7.8e-16 Score=112.45 Aligned_cols=111 Identities=26% Similarity=0.381 Sum_probs=95.2
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
++..+.+++++.++++.|.+.+++.+||+|++ |+++|+++..|++++....+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-------------------------- 55 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-------------------------- 55 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC--------------------------
Confidence 57889999999999999998899999999987 899999999999874311000
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.....++.++|..+++++.+++++.+++++|.+.+...+||+|+ |+++|+|++.|+++
T Consensus 56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 56 DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 01235688889888999999999999999999999999999996 99999999999975
No 19
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=6e-16 Score=112.26 Aligned_cols=109 Identities=30% Similarity=0.450 Sum_probs=95.4
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+.+...+||+|++|+++|+|+..|+.+.... .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-----------------------------~ 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-----------------------------G 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-----------------------------c
Confidence 46788999999999999988888999999988999999999999864210 1
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..++.++.+++++.++++.|.+.+..++||++++|+++|+||.+|+.+
T Consensus 53 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 53 GPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 1235788889888999999999999999999999999999997799999999999975
No 20
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.67 E-value=1.7e-15 Score=109.36 Aligned_cols=106 Identities=34% Similarity=0.524 Sum_probs=94.8
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..++++.++.++.+.|.+.++..+||+|++|+++|+++..|+....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-------------------------------- 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY-------------------------------- 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------------
Confidence 577899999999999999999999999999889999999999998641
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|...+.++.+++++.++++.|.+.+..++||++++|+++|+||.+|+++
T Consensus 51 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 51 KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 1135678888888999999999999999999999999999998899999999999975
No 21
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.67 E-value=1.5e-15 Score=111.07 Aligned_cols=112 Identities=31% Similarity=0.412 Sum_probs=95.6
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+.+++++.++.+.|.+.++..+||+|++|+++|+++..|+........ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------~ 54 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------A 54 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence 4678899999999999999999999999999899999999999987531000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--g~~vGiIt~~dll~~ 232 (245)
....++.++|..++.++.+++++.+++++|.+.+...+||+|++ |+++|+||.+|++++
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 55 GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 01334778888889999999999999999999999999999977 799999999999863
No 22
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=1.7e-15 Score=110.00 Aligned_cols=111 Identities=36% Similarity=0.630 Sum_probs=95.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+.++.++.++.+.|.+.+++.+||+|++|+++|+++..|+.++...... .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--------------------------~ 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--------------------------S 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence 57789999999999999999999999999988999999999999875321100 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..++.++.+++++.++++.|.+.+.+++||+++ |+++|+||.+|+++
T Consensus 56 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 56 ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 0134688889888999999999999999999999999999996 99999999999976
No 23
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=1.9e-15 Score=110.12 Aligned_cols=109 Identities=23% Similarity=0.396 Sum_probs=94.4
Q ss_pred eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (245)
Q Consensus 95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
..++++++++.++.+.|.+.+...++|+|++|+++|+++..|+..+.... ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~~ 55 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------LS 55 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC----------------------------CC
Confidence 56789999999999999988999999999889999999999987642100 01
Q ss_pred cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
...++.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+||.+|++.
T Consensus 56 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 56 LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 135688889888899999999999999999999999999998899999999999974
No 24
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.67 E-value=4.7e-16 Score=143.96 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=112.7
Q ss_pred CCCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcc
Q 025984 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (245)
Q Consensus 77 ~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~ 156 (245)
...+..++|+|+|++ +..++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+.+......
T Consensus 441 ~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~----------- 507 (574)
T PRK01862 441 RERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR----------- 507 (574)
T ss_pred hhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-----------
Confidence 345678899999998 7889999999999999999999999999999999999999999986421000
Q ss_pred ccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEEhHHHHHHHH
Q 025984 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAAL 234 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--g~~vGiIt~~dll~~~~ 234 (245)
...+.++.++|+++++++++++++.+++++|.+++.+++||+|++ ++++|+||++|+++++.
T Consensus 508 ----------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 508 ----------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ----------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 012357889999989999999999999999999999999999876 48999999999999986
Q ss_pred Hh
Q 025984 235 QI 236 (245)
Q Consensus 235 ~~ 236 (245)
+.
T Consensus 572 ~~ 573 (574)
T PRK01862 572 RM 573 (574)
T ss_pred hh
Confidence 53
No 25
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=1.6e-15 Score=107.85 Aligned_cols=94 Identities=23% Similarity=0.501 Sum_probs=86.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
+++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 57889999999999999998999999999988999999999999853
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
. .+.++.+++++.+++++|.+.+.+++||++++|+++|+||++|+++
T Consensus 49 --~---------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 49 --S---------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred --C---------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 0 1788999999999999999999999999997789999999999986
No 26
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=2.5e-15 Score=108.83 Aligned_cols=107 Identities=29% Similarity=0.538 Sum_probs=94.4
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+.+++++.++.+.|.++++..+||+|++|+++|+++..|+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------------------------------- 51 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA------------------------------- 51 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------------
Confidence 5788999999999999999999999999998899999999999976421
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+||+.|+++
T Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 52 RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 0123477888888999999999999999999999999999998899999999999965
No 27
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=9.9e-16 Score=111.82 Aligned_cols=109 Identities=29% Similarity=0.423 Sum_probs=92.0
Q ss_pred ceeEECCCCCHHHHHHHHHhcC-CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~-~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
++.++++++++.++.+.|.+++ ...+||+|++|+++|+|+..|+..... .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~ 52 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-----------------------------S 52 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-----------------------------h
Confidence 5788999999999999997664 789999998899999999999986421 0
Q ss_pred hccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 173 KTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 173 ~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.....++.++|.. .++++.+++++.++++.|.+.+.+++||+|++|+++|+||.+|+++
T Consensus 53 ~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 53 QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 1123567788864 3568999999999999999999999999997789999999999874
No 28
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=1.3e-15 Score=111.25 Aligned_cols=115 Identities=31% Similarity=0.432 Sum_probs=94.0
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
+++++++++++.++.+.|.+++.+.+||+|++|+++|+|+..|+.++...... ..+ ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~------------~~~----------~~ 59 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN------------LDL----------ER 59 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc------------hhH----------HH
Confidence 57889999999999999999999999999988999999999999875321000 000 00
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|.+.+.++.+++++.++++.|.+.+ .+||+|++|+++|+||.+|++++
T Consensus 60 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 60 LVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred HhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 0145788899988999999999999999998765 58999988999999999999863
No 29
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2e-15 Score=111.40 Aligned_cols=121 Identities=35% Similarity=0.518 Sum_probs=97.7
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..|+.+....... ... ...+ ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-~~~-------~~~~----------~~ 63 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLS-DNG-------EESL----------TK 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccc-ccc-------cccc----------cc
Confidence 57889999999999999999999999999988999999999999875321000 000 0000 01
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus 64 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 64 ERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred ccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 12467888898889999999999999999999999999999987899999999999863
No 30
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.9e-15 Score=108.82 Aligned_cols=110 Identities=28% Similarity=0.456 Sum_probs=95.4
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+++++++.++.+.|.+.++..+||+|++|+++|+++..|++++.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------~ 53 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------I 53 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------C
Confidence 467899999999999999988999999999889999999999998653110 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..+++++.+++++.++++.|.+.+...+||++++|+++|++|++|+++
T Consensus 54 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 54 DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 1235677888888999999999999999999999999999998899999999999975
No 31
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.2e-15 Score=111.60 Aligned_cols=119 Identities=21% Similarity=0.219 Sum_probs=91.7
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
++.++.+++++.++.+.|.+.+++.+||+|++ |+++|+|+..|++++........ ..+. ..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~----------~~~~-------~~- 63 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSF----------PGLD-------PL- 63 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhc----------cchh-------hh-
Confidence 57889999999999999998889999999987 89999999999987531100000 0000 00
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll 230 (245)
......+.++|..++.++.+++++.++++.|.+.+.+++||+|++|+++|+||.+|+-
T Consensus 64 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 64 YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 0001122346777888999999999999999999999999999889999999999973
No 32
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.66 E-value=7.5e-16 Score=114.70 Aligned_cols=113 Identities=26% Similarity=0.277 Sum_probs=95.5
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.++++..+||+|++|+++|+++.+|+....... ..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~---------------------------~~ 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG---------------------------KV 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh---------------------------cc
Confidence 578899999999999999999999999999889999999999998642100 01
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHH---------cCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLE---------TKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~---------~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
....++.++|.+++.++.+++++.++.+++.. .+..++||++++|+++|+||..|+++++
T Consensus 56 ~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 56 QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 23578999999999999999999999996543 3567888999889999999999999863
No 33
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.65 E-value=2.8e-15 Score=134.56 Aligned_cols=188 Identities=30% Similarity=0.415 Sum_probs=133.7
Q ss_pred CeeeeccccccccccCCCCCCCCCCcccccccccccCCCCc---hhhhhhhhccCC-cccccccccccccccccccCCCC
Q 025984 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPG---CRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA 77 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (245)
|-+++|.-+.+.-- .....+.-..++...+|++++.+.. .+....+..... .++.++-+.-.....
T Consensus 6 dv~l~p~~~~~~~~--~~~~~~~~~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~-------- 75 (450)
T TIGR01302 6 DVLLLPGFIDVEPD--DVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQ-------- 75 (450)
T ss_pred ceEecccccccCcc--ccccccccccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHH--------
Confidence 55667765543221 1111222223667788888775432 333344444433 233222111111111
Q ss_pred CCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC---CcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMF 154 (245)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~---g~~~Giv~~~dl~~~~~~~~~~~~~~~~~ 154 (245)
.-.-.+.++.|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+....
T Consensus 76 -V~~Vk~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~------------- 139 (450)
T TIGR01302 76 -VKRVKRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK------------- 139 (450)
T ss_pred -HhhhccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------
Confidence 1123366777877 79999999999999999999999999999987 7999999999997431
Q ss_pred ccccccccchhHHHHHHhhccCCccccccc-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
....++.++|. .+++++++++++.+++++|.+.+.+.+||+|++|+++|+||.+|+++.+
T Consensus 140 -------------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 140 -------------------DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred -------------------cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 12467889998 4899999999999999999999999999999999999999999999986
Q ss_pred H
Q 025984 234 L 234 (245)
Q Consensus 234 ~ 234 (245)
.
T Consensus 201 ~ 201 (450)
T TIGR01302 201 K 201 (450)
T ss_pred c
Confidence 4
No 34
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=3.6e-15 Score=111.01 Aligned_cols=124 Identities=23% Similarity=0.395 Sum_probs=93.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.++++..+||+|++|+++|+++..|++........ .. . .... .+.++. .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~-~~--~-~~~~-----~~~~~~---~- 68 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDD-LL--L-YRTI-----TFKELS---E- 68 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcch-hh--c-ccch-----hhhhhh---h-
Confidence 57889999999999999999999999999988999999999999875310000 00 0 0000 000000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.-....+.+..++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++
T Consensus 69 -~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 69 -KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred -hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 001223456677899999999999999999999999999998899999999999975
No 35
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=3.7e-15 Score=108.42 Aligned_cols=110 Identities=25% Similarity=0.469 Sum_probs=94.8
Q ss_pred eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (245)
Q Consensus 95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
+..+.+++++.++.+.|.+.+...+||+|++|+++|+++..|+...... + ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~--------------------------~~~ 55 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-S--------------------------EEL 55 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-h--------------------------hhh
Confidence 5778999999999999999999999999988999999999999863210 0 011
Q ss_pred cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
...++.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+||..|+++
T Consensus 56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 245788889888999999999999999999999999999998899999999999975
No 36
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=4.9e-15 Score=111.14 Aligned_cols=131 Identities=36% Similarity=0.583 Sum_probs=99.9
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.+.++..+||+|++|+++|+++..|+..+....... .....+.. ..+.+ ++.+.+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~-~~~~~~~~-----~~~~~-~~~~~~ 74 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGL-FYVTLLYS-----VIFLD-ESKIKK 74 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCc-cccccccc-----ccccc-hHHHHH
Confidence 578899999999999999988999999999989999999999998754211100 00000000 00011 222333
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|.+++..+.+++++.+++++|.+.+.+.+||+++ |+++|+||.+|++++
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 3455888999888999999999999999999999999999997 999999999999863
No 37
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.65 E-value=2.6e-15 Score=134.93 Aligned_cols=125 Identities=26% Similarity=0.384 Sum_probs=110.4
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHh-----cCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCC
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM 153 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~-----~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~ 153 (245)
.+...+++++|++ ++.+++++.++.++.+.|++ .+...++|+|++|+++|+|+.+|+....
T Consensus 127 ~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~------------ 192 (449)
T TIGR00400 127 SYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK------------ 192 (449)
T ss_pred CCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC------------
Confidence 3466799999998 89999999999999999975 3456789999889999999999997531
Q ss_pred CccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 154 FPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
.+.+++++|.++++++.+++++.++++.|.+++...+||||++|+++|+||.+|+++.+
T Consensus 193 ---------------------~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l 251 (449)
T TIGR00400 193 ---------------------PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVI 251 (449)
T ss_pred ---------------------CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHH
Confidence 24578999999899999999999999999999999999999999999999999999998
Q ss_pred HHhHH
Q 025984 234 LQIKH 238 (245)
Q Consensus 234 ~~~~~ 238 (245)
.+...
T Consensus 252 ~~~~~ 256 (449)
T TIGR00400 252 QSEAT 256 (449)
T ss_pred HhhhH
Confidence 87554
No 38
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.65 E-value=3.5e-15 Score=134.83 Aligned_cols=188 Identities=24% Similarity=0.308 Sum_probs=134.5
Q ss_pred CeeeeccccccccccCCCCCCCCCCcccccccccccCCC---CchhhhhhhhccCC-cccccccccccccccccccCCCC
Q 025984 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAA 77 (245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (245)
|-+|+|.-+.+. +......+.-..++....|++..++ .-.+....+.+... .++.+.-++-.....
T Consensus 22 dv~l~p~~~~~~--~~~v~~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~-------- 91 (495)
T PTZ00314 22 DVILLPGYIDFS--RDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVEE-------- 91 (495)
T ss_pred ceEecccccccc--cccccccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHHH--------
Confidence 556777766552 2222222333346677888886633 22344445555555 343332222111111
Q ss_pred CCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC---CcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMF 154 (245)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~---g~~~Giv~~~dl~~~~~~~~~~~~~~~~~ 154 (245)
.-.-....+.|.. ++.++++++++.++.++|.++++..+||+|++ |+++|+|+.+|+....
T Consensus 92 -v~kvk~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~------------- 155 (495)
T PTZ00314 92 -VRKVKRFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK------------- 155 (495)
T ss_pred -Hhhcccccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-------------
Confidence 1112245566776 78999999999999999999999999999973 7999999999997421
Q ss_pred ccccccccchhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|++ ++.++.+++++.+++++|.+.+.+.+||+|++++++|+||++||++.
T Consensus 156 -------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 156 -------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred -------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 125678999987 78999999999999999999999999999999999999999999987
Q ss_pred HH
Q 025984 233 AL 234 (245)
Q Consensus 233 ~~ 234 (245)
..
T Consensus 217 ~~ 218 (495)
T PTZ00314 217 RG 218 (495)
T ss_pred cc
Confidence 54
No 39
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=2.2e-15 Score=109.17 Aligned_cols=102 Identities=39% Similarity=0.524 Sum_probs=89.8
Q ss_pred ECCCCCHHHHHHHHHhcC-----CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 98 v~~~~~v~~~~~~~~~~~-----~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+.+++++.++.+.|.+++ +..+||+|++|+++|+|+.+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~------------------------------- 50 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD------------------------------- 50 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence 578899999999998776 46899999889999999999987521
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.+.++.++|.+++.++.+++++.++++.|.+.+..++||+|++|+++|+||..|++++
T Consensus 51 --~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 51 --PDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred --CcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 1356788888888999999999999999999999999999988999999999999976
No 40
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=2.5e-15 Score=111.37 Aligned_cols=123 Identities=33% Similarity=0.510 Sum_probs=96.9
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
++.++.++.++.++++.|.+.++..+||+|++ |+++|+|+..|+..+..... .|..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~--------------~~~~~~~--~~~~ 65 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGE--------------KFNKIKT--GNGL 65 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccc--------------hhccccc--cccc
Confidence 57889999999999999999999999999987 99999999999987532100 0000000 0000
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.....++.++|.++++++++++++.++++.|.+.+.+.+||++++|+++|+||..|++++
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 66 EAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 112356788888889999999999999999999999999999977999999999999863
No 41
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=4e-15 Score=112.44 Aligned_cols=132 Identities=25% Similarity=0.388 Sum_probs=98.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccc-hhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT-FNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (245)
++.++++++++.++++.|.+.+...+||+|++|+++|+|+..|++........ . .+ ....+.|+. +........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~--~--~~-~~~~~~~~~~~~~~~~~~~ 76 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNE--R--GL-PKKSIKMKRKAGQKRYRYV 76 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccc--c--cc-chhhhhhhhhccccccccc
Confidence 57889999999999999999999999999999999999999999875321000 0 00 000011110 000000011
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.....++.++|.+++.++.+++++.++++.|.+.+.+++||+++ |+++|+||.+|+++
T Consensus 77 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 77 KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 12345788999888899999999999999999999999999996 99999999999986
No 42
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=4.4e-15 Score=107.76 Aligned_cols=109 Identities=26% Similarity=0.422 Sum_probs=94.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+++++++.++.+.|.+++++.+||+|++|+++|+++..|+..+... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~----------------------------~~ 53 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLF----------------------------ES 53 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhh----------------------------cc
Confidence 57889999999999999999999999999988999999999999864210 00
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|.+++.++.+++++.++++.|.+.+...+||+++ |+++|+||..|+++
T Consensus 54 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 54 FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 0134677888888899999999999999999999999999997 99999999999874
No 43
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.64 E-value=2.6e-15 Score=109.37 Aligned_cols=112 Identities=38% Similarity=0.540 Sum_probs=94.9
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.+.+...+||+|++|+++|+|+..|+.+...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-------------------------~~~ 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-------------------------YHC 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-------------------------hcc
Confidence 4678999999999999999888889999998899999999999986421000 001
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..++.++.+++++.++++.|.+.+..++||+|+ |+++|+||.+|+++
T Consensus 57 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 57 DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 1245788889888999999999999999999999999999996 99999999999975
No 44
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.64 E-value=6e-15 Score=106.78 Aligned_cols=108 Identities=36% Similarity=0.500 Sum_probs=94.0
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+++++++.++.+.|.+.+++.+||+++ |+++|+++..|+.++... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~-----------------------------~ 51 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR-----------------------------G 51 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence 5778999999999999999999999999998 899999999999865210 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus 52 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 52 LELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ccccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 1125677888888899999999999999999999999999998899999999999975
No 45
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.64 E-value=3.8e-15 Score=108.27 Aligned_cols=111 Identities=34% Similarity=0.563 Sum_probs=96.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
+++++++++++.++.+.|.+.++..+||+|++|+++|+++..|+.++..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~ 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---------------------------L 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence 5788999999999999999989999999998899999999999986521000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~vGiIt~~dll~ 231 (245)
....++.++|.+.+.++.+++++.++++.|.+.+..++||+++ +|+++|+||..|+++
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 55 YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 0125788899999999999999999999999999999999997 789999999999975
No 46
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.64 E-value=5.1e-15 Score=108.16 Aligned_cols=106 Identities=36% Similarity=0.600 Sum_probs=92.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHH
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
++.++.+++++.++.+.|.+++...+||+|+ +|+++|+++..|+....
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence 4678899999999999999888889999997 78999999999987431
Q ss_pred HhhccCCcccccccCCceEecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 171 LSKTNGKMVGDLMTPAPVVVRE--TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 171 ~~~~~~~~v~~~m~~~~~~v~~--~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|...+.++.. ++++.++++.|.+.+..++||++++|+++|+||++|+++
T Consensus 54 ---~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 54 ---DSETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred ---ccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 0135688889887788866 999999999999999999999998899999999999875
No 47
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.64 E-value=4.6e-15 Score=107.95 Aligned_cols=111 Identities=31% Similarity=0.415 Sum_probs=95.7
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
+++++++++++.++.+.|.+.+++.+||+|++|+++|+++..++........ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~---------------------------~ 55 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL---------------------------D 55 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC---------------------------c
Confidence 5778899999999999998888899999998899999999999887531100 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|.+.+.++.+++++.+++++|...+...+||++++|+++|+||..||++
T Consensus 56 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 56 ILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred cccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 1134688899888999999999999999999999999999998899999999999975
No 48
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.64 E-value=4.6e-15 Score=134.40 Aligned_cols=165 Identities=31% Similarity=0.404 Sum_probs=125.1
Q ss_pred cccccccccccC---CCCchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCC
Q 025984 27 TSFALQLPCLLL---SRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT 102 (245)
Q Consensus 27 ~~~~~~~~~~~~---~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~ 102 (245)
.++...+|++.+ .-.-.++...+.+... .++...-.+-...+. ...-..++++|.. ++.++++++
T Consensus 36 ~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~---------I~~vk~~~dim~~--~~v~i~~~~ 104 (486)
T PRK05567 36 KNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEE---------VRKVKRSESGVVT--DPVTVTPDT 104 (486)
T ss_pred hhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHH---------HHHhhhhhhcccC--CCeEeCCCC
Confidence 356677888876 3334455555555443 222221111111111 1122357788888 899999999
Q ss_pred CHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCccccc
Q 025984 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDL 182 (245)
Q Consensus 103 ~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 182 (245)
++.++.+.|.+++++.+||+|++|+++|+|+.+|+.... ....++.++
T Consensus 105 tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~--------------------------------~~~~~V~di 152 (486)
T PRK05567 105 TLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET--------------------------------DLSQPVSEV 152 (486)
T ss_pred CHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc--------------------------------cCCCcHHHH
Confidence 999999999999999999999999999999999997421 124578889
Q ss_pred cc-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 183 MT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 183 m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
|. .+++++.+++++.++++.|.+.+.+.+||+|++|+++|+||.+||++.+.
T Consensus 153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 98 67899999999999999999999999999999999999999999998864
No 49
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.64 E-value=5.1e-15 Score=107.01 Aligned_cols=106 Identities=44% Similarity=0.652 Sum_probs=92.8
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+..++++.++.+.|.++++..+||+|++|+++|+++.+++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------- 50 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------- 50 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------------------------------
Confidence 578899999999999999989999999999889999999999986431
Q ss_pred ccCCcccccccCCceEecC-CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRE-TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~-~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|...+.++.+ ++++.++++.|.+.+.+.+||++++|+++|+||.+|+++
T Consensus 51 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 51 DLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred cCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 0145778888776777777 999999999999999999999998899999999999975
No 50
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=6.9e-15 Score=106.57 Aligned_cols=107 Identities=34% Similarity=0.550 Sum_probs=94.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.+++.+.++.++.+.|.+.++..+||+|+ |+++|+++..|+..... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~-----------------------------~~ 52 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALR-----------------------------HG 52 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHh-----------------------------cc
Confidence 5788999999999999999888899999998 89999999999986421 00
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|...+.++.+++++.+++++|.+.+.+++||++ +|+++|+||..|+++
T Consensus 53 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 53 LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 124678888988899999999999999999999999999999 799999999999975
No 51
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=4e-15 Score=109.73 Aligned_cols=120 Identities=26% Similarity=0.460 Sum_probs=96.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+.+++.+||+|++|+++|+++..|+++...... ... ..+ ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~--~~~--------~~~~ 63 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRT--------SVE--DQQ--------RTQT 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccc--------ccc--chh--------hhhh
Confidence 5788999999999999999889999999998899999999999986421000 000 000 0000
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 64 KASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred hccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 1245677888888999999999999999999999999999998899999999999986
No 52
>PRK11573 hypothetical protein; Provisional
Probab=99.63 E-value=3.8e-15 Score=132.14 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=110.7
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
.+.+.+|+++|+|+.++..++.++++.++.+.+.+++++++||++++ ++++|+|+.+|++..... +.
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~-~~----------- 250 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE-KK----------- 250 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc-cC-----------
Confidence 67889999999999999999999999999999999999999999765 789999999999864210 00
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
......+.+++. ++.+|++++++.++++.|++.+.+...|+|++|...|+||.+|+++++....
T Consensus 251 ---------------~~~~~~l~~~~r-~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 251 ---------------EFTKENMLRAAD-EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred ---------------cCCHHHHHhhcc-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 000122334544 4889999999999999999999999999999999999999999999998554
No 53
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.63 E-value=6.1e-15 Score=106.94 Aligned_cols=108 Identities=27% Similarity=0.412 Sum_probs=92.2
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
++.++++++++.++.+.|.+.++..+||++++ |+++|+++..|+..+...
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~----------------------------- 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE----------------------------- 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc-----------------------------
Confidence 57889999999999999998889999999988 999999999999875310
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.....++.+++. ++.++.+++++.+++++|.+.+.+++||++++|+++|+||++|+++
T Consensus 53 ~~~~~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 53 GEEDLDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCCcCCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 000134556664 5788999999999999999999999999998899999999999975
No 54
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.63 E-value=9.2e-15 Score=105.82 Aligned_cols=109 Identities=31% Similarity=0.514 Sum_probs=94.4
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+++++++.++.+.|.+.+...+||+|+ |+++|+++..|+.++.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~----------------------------~ 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASG----------------------------P 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcC----------------------------C
Confidence 4778999999999999999888889999987 8999999999998753100 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 53 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 53 DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 0246788888888999999999999999999999999999998899999999999975
No 55
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.63 E-value=4e-15 Score=112.07 Aligned_cols=128 Identities=36% Similarity=0.645 Sum_probs=97.9
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHH----
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK---- 169 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 169 (245)
++.++.+++++.++.+.|.+++++.+||+|++|+++|+++..|+.+...... ......|.......+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 73 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGT---------ERRRARWLDLLAGAEELAA 73 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccC---------cchhhhHHHHhcchHHHHH
Confidence 5788999999999999999999999999998899999999999986421100 000001111000000
Q ss_pred HHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 170 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
........++.++|.+++.++.+++++.++++.|.+.+.+++||+| +|+++|+||++|+++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 0001234578899988899999999999999999999999999999 899999999999976
No 56
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.63 E-value=5.9e-15 Score=132.46 Aligned_cols=161 Identities=25% Similarity=0.327 Sum_probs=123.6
Q ss_pred ccccccccCCC---CchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 30 ALQLPCLLLSR---PGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 30 ~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
...+|++++++ .-.+....|.+... .++.++ .+...+. ..+..+++.++|.. ++.++.+++++.
T Consensus 41 ~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n-~~i~~qa---------e~v~~VKv~eim~~--~pvtv~p~~tI~ 108 (475)
T TIGR01303 41 GTTIPLVVANMTAVAGRRMAETVARRGGIVILPQD-LPIPAVK---------QTVAFVKSRDLVLD--TPITLAPHDTVS 108 (475)
T ss_pred ccccceeeccchhhHHHHHHHHHHHCCCEEEEeCC-CCHHHHH---------HHHhhcchhhcccc--CCeEECCCCCHH
Confidence 34677776633 22333333455555 333332 2222221 23456678888988 799999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccC
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP 185 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~ 185 (245)
++.+.|.+++++.+||+|+ ++++|+|+.+|+.... ...++.++|+.
T Consensus 109 eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~~---------------------------------~~~~V~dIMt~ 154 (475)
T TIGR01303 109 DAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGVD---------------------------------RFTQVRDIMST 154 (475)
T ss_pred HHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcCC---------------------------------CCCCHHHHccC
Confidence 9999999999989999885 6899999999986431 13578999999
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
+++++.+++++.+++++|.+++.+++||+|++|+++|+||.+||++.....
T Consensus 155 ~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 155 DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 999999999999999999999999999999889999999999999876543
No 57
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=4.3e-15 Score=110.61 Aligned_cols=114 Identities=26% Similarity=0.453 Sum_probs=91.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh-
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS- 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (245)
++.++..++++.++++.|.+.+.+.+||+|++|+++|+++..|+...... .....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~~~~~~ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------KRIQEG 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------HHHHHc
Confidence 46789999999999999998899999999988999999999999852100 00000
Q ss_pred --hccCCcccccccCCceEe------cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHHHH
Q 025984 173 --KTNGKMVGDLMTPAPVVV------RETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVR 231 (245)
Q Consensus 173 --~~~~~~v~~~m~~~~~~v------~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGiIt~~dll~ 231 (245)
.....++.++|.+++..+ .+++++.++++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 58 ~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 58 GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 012456888997655443 368999999999999999999999986 79999999999976
No 58
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=9.1e-15 Score=105.23 Aligned_cols=104 Identities=39% Similarity=0.655 Sum_probs=92.8
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++++++.+.++.++.+.|.+.+...+||+|+ |+++|+++..|+....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~-------------------------------- 49 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD-------------------------------- 49 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC--------------------------------
Confidence 5788999999999999998888888999997 8999999999997520
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
...++.++|...+.++.+++++.++++.|.+.+...+||++++|+++|+|+..|+++
T Consensus 50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 50 -PDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred -ccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 134688888888899999999999999999999999999998899999999999985
No 59
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.62 E-value=8e-15 Score=106.57 Aligned_cols=111 Identities=34% Similarity=0.551 Sum_probs=93.7
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+.+++++.++.+.|.+++.+.+||+++ |+++|+|+..|+.......+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL--------------------------D 54 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC--------------------------C
Confidence 5778999999999999999888889999997 999999999999743210000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|.+++.++.+++++.++++.|.+.+..++||++++|+++|+||.+|++.
T Consensus 55 ~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 55 PESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 0125788889888999999999999999999999999999998899999999999975
No 60
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=9.3e-15 Score=108.91 Aligned_cols=124 Identities=26% Similarity=0.377 Sum_probs=95.5
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+.+++++.++.+.|.+.+.+.+||+|++|+++|+++..|+..+...... .. .+.........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~-------~~-------~~~~~~~~~~~ 67 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRD-------KA-------RTGDRSGEKER 67 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhh-------hc-------chhhhhhhhhh
Confidence 57789999999999999999999999999998999999999999864211000 00 00000000011
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVD--ADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd--~~g~~vGiIt~~dll~ 231 (245)
....++.++|..+++++.+++++.++++.|.+.+...+||++ ++|+++|+||++|+++
T Consensus 68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 224568889988899999999999999999999999999985 3689999999999986
No 61
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.62 E-value=9.1e-15 Score=105.12 Aligned_cols=100 Identities=33% Similarity=0.399 Sum_probs=89.4
Q ss_pred eEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhcc
Q 025984 96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN 175 (245)
Q Consensus 96 ~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
.++++++++.++.+.|.+.+...+||+|+ |+++|+++..|+....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~---------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT---------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc----------------------------------
Confidence 56799999999999999999999999998 9999999999998531
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
..++.++|...+.++.+++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 2346677888889999999999999999999999999998 689999999999975
No 62
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=1.2e-14 Score=104.20 Aligned_cols=103 Identities=36% Similarity=0.596 Sum_probs=91.6
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+++++++.++.+.|.+++...+||+| +|+++|+++..|+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~-------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH-------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc--------------------------------
Confidence 467899999999999999988888999998 58999999999998631
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
...++.++|.+++.++++++++.++++.|.+.+...+||+|+ |+++|+||..|++.
T Consensus 49 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 49 -PNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred -ccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 134577888888999999999999999999999999999996 99999999999873
No 63
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.61 E-value=1.3e-14 Score=105.04 Aligned_cols=109 Identities=39% Similarity=0.656 Sum_probs=93.4
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+.+++++.++.+.|.+.+...+||+|+ |+++|+++..|+...... + .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~-~---------------------------~ 52 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAE-G---------------------------R 52 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhc-C---------------------------c
Confidence 5788999999999999999888899999998 999999999999864210 0 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..++.++.+++++.++++.|.+.+.+++||++++|+++|+||..|+++
T Consensus 53 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 53 EATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 0012567778888999999999999999999999999999997799999999999975
No 64
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=1.4e-14 Score=105.74 Aligned_cols=110 Identities=25% Similarity=0.489 Sum_probs=90.9
Q ss_pred ceeEECCCCCHHHHHHHHHhcC-CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~-~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
++.++++++++.++.+.|.+++ ...++|+| +|+++|+++..|+..+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~--------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK--------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---------------------------
Confidence 4678899999999999998877 66777777 589999999999986421000
Q ss_pred hccCCcccccccCCceEecCC--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRET--TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~--~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.....++.++|..+++++.++ +++.+++++|.+.+...+||+|++|+++|+||++|+++
T Consensus 54 ~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 54 DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 001356788888888889887 78999999999999999999998899999999999986
No 65
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.61 E-value=1.6e-14 Score=106.14 Aligned_cols=120 Identities=39% Similarity=0.612 Sum_probs=96.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.+.++..+||+|+ |+++|+++..|+..+....... . ..| +.. ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~-----~-----~~~----~~~---~~ 63 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATT-----L-----DIW----ELY---YL 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccc-----c-----cch----hhh---hh
Confidence 4678999999999999999999999999998 8999999999998753210000 0 000 000 00
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|.+++.++.+++++.+++..|.+.+.+.+||++++|+++|+||..|+++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 1245678889888999999999999999999999999999998799999999999986
No 66
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=1.8e-14 Score=104.74 Aligned_cols=111 Identities=39% Similarity=0.680 Sum_probs=93.2
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+++++.+||+|+ |+++|+++..|++......+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--------------------------~ 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--------------------------D 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--------------------------C
Confidence 5788999999999999999999999999998 999999999998632110000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+||..|+++
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 55 PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred cccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 0123488889888999999999999999999999999999997799999999999975
No 67
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.60 E-value=2.1e-14 Score=104.08 Aligned_cols=109 Identities=34% Similarity=0.554 Sum_probs=93.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.+++.+.++.++.+.|.+.+++.+||+|+ |+++|+++..|+.......+ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG---------------------------L 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC---------------------------C
Confidence 4778999999999999999888899999997 89999999999986321100 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|..+++++.+++++.++++.|.+.+..++||+++ |+++|+||.+|+++
T Consensus 54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 54 DPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 1135688888888999999999999999999999999999996 99999999999975
No 68
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.60 E-value=7.5e-15 Score=132.59 Aligned_cols=119 Identities=25% Similarity=0.368 Sum_probs=102.1
Q ss_pred eecccccCC-CceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 84 ~v~~im~~~-~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
.|+++|... .+.+++++++++.++++.|.++++..+||+|+ +|+++|+||..|++...
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------ 156 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------ 156 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence 567777521 14579999999999999999999999999997 58999999999997420
Q ss_pred cccchhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 160 TWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
...+.++.++|++ +++++.+++++.+|+++|.+++++.+||+|++|+++|+||++|+++..
T Consensus 157 -------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 157 -------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred -------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 1135789999986 678899999999999999999999999999889999999999999864
No 69
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.6e-14 Score=106.53 Aligned_cols=121 Identities=31% Similarity=0.457 Sum_probs=95.6
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.+.+++.+||+|+ |+++|+++..++.++...... ..+....+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~------------~~~~~~~~~-----~ 63 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLG------------TAGETEKDL-----A 63 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhc------------cccchHHHH-----H
Confidence 4788999999999999999999999999997 899999999999864310000 000000000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|..+++++.+++++.++++.|.+.+...+||++++|+++|++++.|++++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 64 TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 11346788888889999999999999999999999999999988999999999999864
No 70
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.60 E-value=4e-15 Score=131.57 Aligned_cols=127 Identities=24% Similarity=0.395 Sum_probs=113.8
Q ss_pred CCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
..+..+.++++++. +.++|++.+++.+|.+.|...+.+.+.++++++...||||.+|+..+.-..+.
T Consensus 144 ~e~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~----------- 210 (610)
T COG2905 144 SEFILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR----------- 210 (610)
T ss_pred chHHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----------
Confidence 35566789999998 89999999999999999999999999999999999999999999986433232
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
....+|+++|+.++++|+.++.+.+|+-+|.+++++++||++ +|+++|+||.+||++...
T Consensus 211 ----------------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 211 ----------------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred ----------------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 246899999999999999999999999999999999999998 799999999999998765
No 71
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.60 E-value=2.3e-14 Score=103.93 Aligned_cols=110 Identities=22% Similarity=0.329 Sum_probs=93.7
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
+++.+++++++.++.+.|.+.+...++|+|+ |++.|+++..|+........ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG---------------------------L 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC---------------------------C
Confidence 4678899999999999999888889999998 89999999999986531000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|..++..+.+++++.++++.|.+.+...+||+++ |+++|+||..|++++
T Consensus 54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 54 PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhcC
Confidence 1245788889888999999999999999999999999999984 899999999999863
No 72
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.60 E-value=2.9e-14 Score=128.99 Aligned_cols=113 Identities=26% Similarity=0.394 Sum_probs=101.1
Q ss_pred ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchh
Q 025984 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 165 (245)
Q Consensus 89 m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
|.+ +++++++++++.++.+.|.++++..+||+|+ +|+++|+|+.+|+....
T Consensus 106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------------ 159 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------------ 159 (505)
T ss_pred ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------------
Confidence 555 7999999999999999999999999999997 48999999999997531
Q ss_pred HHHHHHhhccCCcccccccCC--ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 166 EVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 166 ~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
..+.++.++|++. ++++.+++++.+++++|.+.+.+.+||+|++++++|+||++|+++.+..
T Consensus 160 --------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 160 --------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred --------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 1257899999876 7799999999999999999999999999988999999999999998764
No 73
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.59 E-value=2.6e-14 Score=127.71 Aligned_cols=130 Identities=25% Similarity=0.308 Sum_probs=110.7
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEc-CCCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd-~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
.+.+.+|+++|+|+.++..++.+.++.++.+.+.+++++++||++ +.+.++|+++.+|++......+
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~------------ 269 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ------------ 269 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc------------
Confidence 678899999999999999999999999999999999999999999 4588999999999998632110
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
........+. ++++|++++++.++++.|++.+.+...|+|++|.+.|+||.+|+++++....
T Consensus 270 -----------------~~~~~~~~~~-~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei 331 (429)
T COG1253 270 -----------------SDLDLRVLVR-PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEI 331 (429)
T ss_pred -----------------cccchhhccc-CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCC
Confidence 0011111222 6899999999999999999999999999999999999999999999998754
Q ss_pred H
Q 025984 238 H 238 (245)
Q Consensus 238 ~ 238 (245)
.
T Consensus 332 ~ 332 (429)
T COG1253 332 P 332 (429)
T ss_pred c
Confidence 3
No 74
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=3.2e-14 Score=103.29 Aligned_cols=110 Identities=28% Similarity=0.520 Sum_probs=91.2
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+++...++|.+ +|+++|+++..|+.......+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA--------------------------G 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC--------------------------c
Confidence 578899999999999999887877777666 4899999999999865311000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|...+.++.+++++.+++++|.+.+...+||++ +|+++|+||.+|+++
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 55 VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 113568888988889999999999999999999999999998 589999999999986
No 75
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.58 E-value=2.9e-14 Score=102.94 Aligned_cols=109 Identities=30% Similarity=0.416 Sum_probs=90.6
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+++++.+||+|+ |+++|+++..|+.+...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~---------------------------~ 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK---------------------------A 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc---------------------------c
Confidence 5778999999999999999999999999998 89999999999987531100 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|.+++.++.+++++.+++++|.+ . ..+||++++|+++|+||.+|++++
T Consensus 54 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 54 KFSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 01356778888888999999999999999988 3 347888888999999999999864
No 76
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=2.4e-14 Score=105.39 Aligned_cols=120 Identities=32% Similarity=0.494 Sum_probs=95.4
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++.+.|.+.+...+||+|+ |+++|+++..++..+...... .|.. ......
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-------------~~~~----~~~~~~ 63 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRP-------------LVRD----RHQERR 63 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhh-------------cccc----hhhhhh
Confidence 5778999999999999999889999999997 999999999999865321000 0000 000001
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
....++.++|..++.++.+++++.+++.+|.+.+.+++||+|+ |+++|+||.+|++++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 1245778888888999999999999999999999999999997 999999999999863
No 77
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.58 E-value=1.6e-14 Score=121.44 Aligned_cols=114 Identities=32% Similarity=0.403 Sum_probs=100.4
Q ss_pred cceecccccCCCc-eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 82 ~~~v~~im~~~~~-~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
.++|+++|.+ + ++++++++++.++.+.|.+.++..+||+|++|+++|+|+..|+..+... +
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-~--------------- 215 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-G--------------- 215 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-C---------------
Confidence 4699999988 6 8999999999999999998899999999988999999999999865210 0
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEE
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIIT 225 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt 225 (245)
.....++.++|.++++++.+++++.+++++|.+.+...+||+|++|+++|+|+
T Consensus 216 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 216 ------------GSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------CcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 11246789999998999999999999999999999999999998899999985
No 78
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.56 E-value=5.2e-14 Score=103.50 Aligned_cols=119 Identities=35% Similarity=0.530 Sum_probs=95.2
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.+.++..+||+|++|+++|+++..|+............ .+. ...
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~-----------------~~~-~~~ 63 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS-----------------EHE-LYL 63 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch-----------------hhh-hhh
Confidence 47789999999999999999999999999988999999999999764210000000 000 001
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|...+.++.+++++.++++.|.+.+..++||+++ |+++|++|.+|+++
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 2345688888888999999999999999999999999999986 99999999999975
No 79
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.56 E-value=4.4e-14 Score=102.00 Aligned_cols=100 Identities=33% Similarity=0.537 Sum_probs=89.3
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHH
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
+...+.+++++.++.+.+.+.+...+||+|+ +|+++|+|+.+|+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~---------------------------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK---------------------------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH----------------------------
Confidence 5788999999999999999988889999998 689999999999986420
Q ss_pred HhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 171 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
. +|.+++.++++++++.++++.|.+.+.+++||++ +|+++|+||++|++++
T Consensus 55 -----~-----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 55 -----N-----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred -----H-----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 1 6777889999999999999999999999999996 7899999999999763
No 80
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.55 E-value=1.4e-13 Score=98.89 Aligned_cols=111 Identities=48% Similarity=0.747 Sum_probs=93.5
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.+++.++++.++.+.|.+.+...+||++++++++|+++..|+........ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~ 54 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG---------------------------L 54 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc---------------------------C
Confidence 4678899999999999999988899999998899999999999987531000 0
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.....+.++|..++.++.+++++.+++..|.+.+..++||+|++|+++|+++..|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 55 DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred CccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 0011256678788899999999999999999999999999998899999999999975
No 81
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.5e-13 Score=99.66 Aligned_cols=110 Identities=35% Similarity=0.551 Sum_probs=92.2
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++++++++.++.+.|.+.+.+.+||+|++ +++|+++..|++......+ ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~--------------------------~~ 54 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRN--------------------------LK 54 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhcc--------------------------CC
Confidence 46788999999999999998899999999964 9999999999987421100 00
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
....++.++|.+++.++.+++++.++++.|.+.+.+.+||++++ +++|+|+.+|+++
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 55 PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 12456788888888999999999999999999999999999964 9999999999974
No 82
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.5e-13 Score=98.92 Aligned_cols=104 Identities=39% Similarity=0.646 Sum_probs=91.1
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++..++++.++.+.|.+.++..+||++++|+++|+++.+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 577889999999999999988889999999889999999999997521
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
...++.++|...+.++.+++++.+++..|.+.+.+.+||++ +|+++|+||..|+++
T Consensus 50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 50 -EEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred -ccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 12356677887889999999999999999999999999998 479999999999875
No 83
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.54 E-value=7.5e-14 Score=125.99 Aligned_cols=123 Identities=25% Similarity=0.339 Sum_probs=102.8
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
.+..++++++|.+ ++.++.+++++.++.+.|.++++..+||+|++|+++|+|+.+|+........
T Consensus 331 ~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------- 395 (454)
T TIGR01137 331 VLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK------------- 395 (454)
T ss_pred HhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-------------
Confidence 3677899999988 8999999999999999999999999999998899999999999987431100
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
.....++.++|.+++.++++++++.+++++|.+.+ .+||+++|+++|+||++|+++++
T Consensus 396 --------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 396 --------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 01235788999888899999999999999998764 34454478999999999999875
No 84
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.52 E-value=6.8e-14 Score=118.41 Aligned_cols=132 Identities=22% Similarity=0.248 Sum_probs=111.9
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
.++.++|.|+|.|+.++..++.+++.+++.+.+..+.|.++|++.++ ++++|+++.+|+++++...+.
T Consensus 196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----------- 264 (423)
T COG4536 196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----------- 264 (423)
T ss_pred ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----------
Confidence 67899999999999999999999999999999999999999999765 679999999999987531110
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.....+..+.. .|.+|+..+++.+-+..|++++.+...||||+|.+.|+||.+|+++++....
T Consensus 265 ----------------~~k~d~~~~a~-epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdf 327 (423)
T COG4536 265 ----------------FTKEDILRAAD-EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDF 327 (423)
T ss_pred ----------------ccHhHHHHHhc-CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccc
Confidence 01122222223 4899999999999999999999999999999999999999999999998665
Q ss_pred H
Q 025984 238 H 238 (245)
Q Consensus 238 ~ 238 (245)
.
T Consensus 328 t 328 (423)
T COG4536 328 T 328 (423)
T ss_pred c
Confidence 4
No 85
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=2e-13 Score=100.20 Aligned_cols=113 Identities=29% Similarity=0.438 Sum_probs=91.7
Q ss_pred ceeEECCCCCHHHHHHHHHhcC-CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~-~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
+++++++++++.++.+.|...+ ++.+||+|+ |+++|+|+..|+..+.... |. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~----------------~~--------~~ 56 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTP----------------YG--------RA 56 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhch----------------hh--------HH
Confidence 4678899999999999998876 889999999 9999999999998642100 00 00
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEEhHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYR---RLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~---~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.....++.++|..++.++.+++++.+++..|.+.+.. ..+|++++|+++|+||..|+++
T Consensus 57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 1134678899998899999999999999999988864 3468887899999999999975
No 86
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.2e-13 Score=103.83 Aligned_cols=133 Identities=32% Similarity=0.529 Sum_probs=97.8
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccC--CCCCCC----CCCccc--cccccchh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--SGRADN----SMFPEV--DSTWKTFN 165 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~--~~~~~~----~~~~~~--~~~~~~~~ 165 (245)
++.++++++++.++.+.|.+.++..+||+|+ |+++|+++..|+.++..... .....+ .+...+ ...|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE-- 78 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH--
Confidence 5788999999999999999999999999998 89999999999987542111 000000 000000 011211
Q ss_pred HHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 166 ~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
...........++.++|...+.++.+++++.+++..|.+.+..++||+++ |+++|+|+.+|+++
T Consensus 79 -~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 79 -TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 11111222356788889888999999999999999999999999999996 89999999999974
No 87
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.49 E-value=3.1e-13 Score=124.60 Aligned_cols=151 Identities=28% Similarity=0.388 Sum_probs=111.7
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCC--------------
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG-------------- 147 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~-------------- 147 (245)
..+|+++|.+ ++.++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+.++.......
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 3589999998 899999999999999999999999999999999999999999998753211100
Q ss_pred -------------CC--CCCC----------Cccc--------cccccc--------------------hhHHHHHH---
Q 025984 148 -------------RA--DNSM----------FPEV--------DSTWKT--------------------FNEVQKLL--- 171 (245)
Q Consensus 148 -------------~~--~~~~----------~~~~--------~~~~~~--------------------~~~~~~~~--- 171 (245)
.. ...+ ...+ ...++. -.++.+.+
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~ 224 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN 224 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence 00 0000 0000 000000 00011111
Q ss_pred ----------------hhccCCccccccc-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 172 ----------------SKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 172 ----------------~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
......++.++|+ +++.++++++++.++.+.|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus 225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 1123568999999 88999999999999999999999999999999999999999999998644
No 88
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.48 E-value=1e-12 Score=95.84 Aligned_cols=108 Identities=44% Similarity=0.675 Sum_probs=93.6
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.++.++.++...|.++++..+||++.. +++|+++.+|+..+......
T Consensus 8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~-~l~Giit~~di~~~~~~~~~--------------------------- 59 (117)
T COG0517 8 DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRALAAGGK--------------------------- 59 (117)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC-EEEEEEEHHHHHHHHhccCC---------------------------
Confidence 78999999999999999999999999999853 79999999999986421110
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEEhHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLE-TKYRRLPVVDADG-KLVGIITRGNVV 230 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~-~~~~~l~Vvd~~g-~~vGiIt~~dll 230 (245)
...++.++|..++.++.++.++.++.+.|.+ .+.+.+||+++++ +++|++|..|++
T Consensus 60 -~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 60 -RLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -ccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 1115888999889999999999999999999 6999999999875 999999999973
No 89
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.47 E-value=4.3e-13 Score=118.98 Aligned_cols=125 Identities=34% Similarity=0.449 Sum_probs=113.0
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~ 154 (245)
...-+++.+|+. +++.++++.|+.+++..+++. ...+++|+|+++++.|+++.++++...
T Consensus 129 y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~------------- 193 (451)
T COG2239 129 YPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE------------- 193 (451)
T ss_pred CChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC-------------
Confidence 345589999999 999999999999999999853 467899999999999999999998542
Q ss_pred ccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
.+..+.++|.+.+.+|.+++..+++.++|.+++.-.+||||++|+++|+||..|++..+.
T Consensus 194 --------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 194 --------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred --------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999988
Q ss_pred HhHHH
Q 025984 235 QIKHA 239 (245)
Q Consensus 235 ~~~~~ 239 (245)
+...+
T Consensus 254 eEa~e 258 (451)
T COG2239 254 EEATE 258 (451)
T ss_pred HHHHH
Confidence 76654
No 90
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.6e-13 Score=122.56 Aligned_cols=170 Identities=24% Similarity=0.303 Sum_probs=128.8
Q ss_pred cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-----CcEE
Q 025984 55 RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLV 129 (245)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-----g~~~ 129 (245)
.+...++.|++.++. +..+.+++++++|.+ ++++++.-..+..+.+.++.+.|+.|||+|+. +++.
T Consensus 561 ~~i~LkgvP~Le~~p-------e~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~ 631 (762)
T KOG0474|consen 561 IIIQLKGVPFLEWEP-------EPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLH 631 (762)
T ss_pred HhhhccCCccccCCC-------chHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhh
Confidence 566678889999884 778899999999999 89999999999999999999999999999962 5789
Q ss_pred EEEehhhhhhhhcc---cCCCCCCCCCCcccccccc-------chhHHHHHH-hhccCCcccccccCCceEecCCCCHHH
Q 025984 130 GLVSDYDLLALDSI---SGSGRADNSMFPEVDSTWK-------TFNEVQKLL-SKTNGKMVGDLMTPAPVVVRETTNLED 198 (245)
Q Consensus 130 Giv~~~dl~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~v~~~m~~~~~~v~~~~~l~~ 198 (245)
|+|-+..+...++. ...++....+...-...|+ .+.+++-.. +...-.++..+|.++|++|.+++++..
T Consensus 632 GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k 711 (762)
T KOG0474|consen 632 GLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAK 711 (762)
T ss_pred HHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHH
Confidence 99999998875432 1111111111111111111 122221111 112345788899999999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 199 AARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 199 ~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
+..+|++.|++|+.||++.+.++|++|++|+.++=
T Consensus 712 ~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 712 AFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred HHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 99999999999999999888899999999998664
No 91
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.38 E-value=5.3e-12 Score=95.17 Aligned_cols=108 Identities=25% Similarity=0.278 Sum_probs=79.4
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|++++........ ..... ..| .
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~--~~~~~---~~~-----------~ 65 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTR--VQPED---ETK-----------Q 65 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccc--cccch---hhc-----------c
Confidence 5789999999999999999999999999999999999999999987642111000 00000 000 0
Q ss_pred ccCCccccc---------ccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 025984 174 TNGKMVGDL---------MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD 217 (245)
Q Consensus 174 ~~~~~v~~~---------m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~ 217 (245)
.....+.++ |..+++++.+++++.+|+++|.+++.+++||+|++
T Consensus 66 ~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 66 TNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred cccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 001122333 34668899999999999999999999999999864
No 92
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1.2e-12 Score=104.39 Aligned_cols=129 Identities=22% Similarity=0.369 Sum_probs=110.9
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
....++|+|+|.|+.+..++..+.++.+++..+.++.+++|||+.++ +.+.|++..+||+..+...
T Consensus 63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~------------- 129 (293)
T COG4535 63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD------------- 129 (293)
T ss_pred HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC-------------
Confidence 44677999999999899999999999999999999999999999754 6799999999999864211
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.....+.++.++ ..+|+++-.+...++-|+..+.+...|+|+.|.+.|+||.+|+++.+....
T Consensus 130 ----------------~~~F~i~~lLRP-av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdI 192 (293)
T COG4535 130 ----------------AEPFDIKELLRP-AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDI 192 (293)
T ss_pred ----------------cccccHHHhccc-ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccc
Confidence 112455666555 788999999999999999999999999999999999999999999988544
No 93
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.28 E-value=1.5e-11 Score=78.51 Aligned_cols=56 Identities=50% Similarity=0.869 Sum_probs=52.9
Q ss_pred ccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 179 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
++++|.++++++++++++.++++.|.+.+.+++||+|++|+++|+||.+||++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 45789999999999999999999999999999999999999999999999999875
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.10 E-value=1.8e-10 Score=73.46 Aligned_cols=54 Identities=46% Similarity=0.722 Sum_probs=51.3
Q ss_pred ecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 85 v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
|+++|++ +++++++++++.++.+.|.+++++.+||+|++|+++|+++.+||+++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhh
Confidence 5789998 89999999999999999999999999999999999999999999976
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.8e-09 Score=95.55 Aligned_cols=121 Identities=26% Similarity=0.284 Sum_probs=97.9
Q ss_pred ceecccccCCC-ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984 83 YTVGDFMTTKE-ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (245)
Q Consensus 83 ~~v~~im~~~~-~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.++.++|.+.. ..+...++.+..++++.|...+...++|+|+++++.|+|+.+++.....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------- 334 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT------------------- 334 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-------------------
Confidence 46677775410 1123446678999999999999999999999999999999999976421
Q ss_pred cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
....+.+.+.....++.+++++.+++..+.+.... +||||++|+++|+|+..++++.+...
T Consensus 335 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 335 -------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred -------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 13356666777788999999999999999987765 99999999999999999999998653
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.09 E-value=2.3e-09 Score=93.71 Aligned_cols=109 Identities=28% Similarity=0.405 Sum_probs=93.8
Q ss_pred eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (245)
Q Consensus 95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
.....++.+..++.+.|...+...+.|+|+++++.|+|+.+++..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------------------- 299 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK-------------------------------- 299 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh--------------------------------
Confidence 345666778999999999999999999999999999999999876421
Q ss_pred cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
....+.+.+.....++.+++++.+++..|.+.+.. +||+|++|+++|+||..++++++...
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 300 KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred cCCchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 12356677777788999999999999999999988 99999999999999999999998764
No 97
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.05 E-value=1.8e-09 Score=94.78 Aligned_cols=125 Identities=27% Similarity=0.388 Sum_probs=96.7
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (245)
++..+..++++.+|++.|...+++.+||+|+.|+.+|.++..|+............ +|.- +...
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~----------~~~~---l~~~--- 301 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNL----------DLSC---LSEA--- 301 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCcc----------chhH---HHHH---
Confidence 58899999999999999999999999999999999999999999875321111000 0000 0000
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
......-....+++.+++++.+++..|...+.+++.|||++|.++|+||..|++.++....
T Consensus 302 ---~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 302 ---LSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred ---hhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence 0111111223689999999999999999999999999999999999999999999988654
No 98
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.04 E-value=7.4e-10 Score=94.95 Aligned_cols=107 Identities=36% Similarity=0.574 Sum_probs=96.0
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHH
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
++..+.++.++.++++....+++..+||.++ .++++|+||.+|+.-.
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------------------------------ 166 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------------------------------ 166 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh------------------------------
Confidence 4678999999999999999999999999974 3679999999998743
Q ss_pred HhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 171 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
+.....+.++|++.+.+.+...+++++-+++.+.+...+||||++|+++.+|++.||.+.
T Consensus 167 --~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 167 --EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred --hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 224678999999989999999999999999999999999999999999999999999875
No 99
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.71 E-value=4.6e-09 Score=94.64 Aligned_cols=165 Identities=11% Similarity=0.118 Sum_probs=112.9
Q ss_pred cccccccCCCCchhhhhhhhccC------Cccc-ccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSS------DRVS-ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 103 (245)
.++.++..+.+..++...+.... ..+. ...+..+...-....+.. . ....+++++|++ ++.+++++++
T Consensus 139 ~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~-a--~~~~~v~~im~~--~~~~v~~~~~ 213 (449)
T TIGR00400 139 IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL-A--KPEEILSSIMRS--SVFSIVGVND 213 (449)
T ss_pred CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc-C--CCCCcHHHHhCC--CCeeECCCCC
Confidence 45667788889999998875311 1111 111111110000000000 0 134579999998 7899999999
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccc
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLM 183 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m 183 (245)
+.++++.|.+++...+||+|++|+++|+|+.+|+..... ....+++|
T Consensus 214 ~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~---------------------------------~~~~ed~~ 260 (449)
T TIGR00400 214 QEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ---------------------------------SEATEDFY 260 (449)
T ss_pred HHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHH---------------------------------hhhHHHHH
Confidence 999999999999999999999999999999999997632 12225666
Q ss_pred cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984 184 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238 (245)
Q Consensus 184 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~ 238 (245)
.....+..+++.+.++...|.+++..+++|. .+.|+++ ..++..+.+...
T Consensus 261 ~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~l~ 310 (449)
T TIGR00400 261 MIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDLLL 310 (449)
T ss_pred HhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHHHH
Confidence 6554444557788999999999999888885 4678888 777776655443
No 100
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.68 E-value=6.2e-08 Score=70.10 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=69.8
Q ss_pred ccccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
.++..+.++.++...+..... .++ ...+.+ ....+... .. .......++.++|.. ++..+.+++++.++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~--~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a 78 (111)
T cd04603 4 VSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLE-IG--PNDYETLKVCEVYIV--PVPIVYCDSKVTDL 78 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHh-hc--cccccccChhheeec--CCcEECCCCcHHHH
Confidence 345677788888888765433 222 222211 11111111 00 112223568899987 78999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998899999999999975
No 101
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.9e-07 Score=83.16 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=107.7
Q ss_pred cccccccccccccccccccCCCCCCCCcceecccccCC---CceeEECCC-CCHHHHHHHHHhcCCceeEEEc--CCCcE
Q 025984 55 RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK---EELHVVKPT-TTVDEALEILVEKRITGFPVID--DDWKL 128 (245)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~~~v~~~-~~v~~~~~~~~~~~~~~~~Vvd--~~g~~ 128 (245)
+.+..++.|+.+... ...+.-..++|++. ..+..++.+ +++.+...+|+++.+..+||+= +..++
T Consensus 524 a~I~~ng~P~l~~k~---------e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~l 594 (696)
T KOG0475|consen 524 AHIELNGYPFLDSKS---------EFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRL 594 (696)
T ss_pred HHHHhcCCCCccccc---------ccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcccccee
Confidence 455566677775442 22233333445432 236667766 8999999999999999898883 34679
Q ss_pred EEEEehhhhhhhhcccC----CCCCCCCCCccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHH
Q 025984 129 VGLVSDYDLLALDSISG----SGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLL 204 (245)
Q Consensus 129 ~Giv~~~dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~ 204 (245)
+|+|.++|+........ ........+.+...... ........+.++|+..|.+|...+|.+.++.+|+
T Consensus 595 vGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~--------~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~ 666 (696)
T KOG0475|consen 595 VGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV--------AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFR 666 (696)
T ss_pred EEEEchHHHHHHHhhhccccccceecccccCCCCcccc--------CCCCCCcCceeeccCCcccccccCcHHHHHHHHH
Confidence 99999999876432111 10001111111000000 0011234678899999999999999999999999
Q ss_pred HcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 205 ETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 205 ~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
+.+++.+.|.. +|++.|+||++|+++...
T Consensus 667 ~lg~~~~~v~~-~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 667 KLGLRQILVTK-NGILLGIITKKDCLRHTR 695 (696)
T ss_pred hhCceEEEEcc-CCeeEeeeehHHHHHhhc
Confidence 99999887755 899999999999998753
No 102
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.57 E-value=1.9e-07 Score=67.87 Aligned_cols=103 Identities=13% Similarity=0.180 Sum_probs=71.0
Q ss_pred cccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984 35 CLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL 108 (245)
Q Consensus 35 ~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~ 108 (245)
++..+.++.++...+.++.. .++ ...+.. ....+...............++.++|.. ++.++.+++++.+++
T Consensus 5 ~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~ 82 (114)
T cd04619 5 KIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLHDVW 82 (114)
T ss_pred EECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHHHHH
Confidence 45677888888888876554 222 222211 1111111000000112234578899987 789999999999999
Q ss_pred HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+.|.+++...+||+|++|+++|+|+.+|+.+
T Consensus 83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 83 QVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 9999999999999998899999999999874
No 103
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=2.5e-07 Score=67.49 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=51.3
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.+++++|.. ++..+++++++.++++.|.+.+...+||+|++|+++|+|+..|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 689999988 7899999999999999999999999999999899999999999863
No 104
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.51 E-value=3.4e-08 Score=91.29 Aligned_cols=142 Identities=20% Similarity=0.330 Sum_probs=96.6
Q ss_pred Ccceeccccc-CCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 81 ~~~~v~~im~-~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
...+|+++|+ . ++.++++++++.++.+.|.+++++.+||+|++|+++|+|+.+|+...... ...+.... +
T Consensus 244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~------~~iLVD~~-e 314 (546)
T PRK14869 244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRK------KVILVDHN-E 314 (546)
T ss_pred cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccC------ceEEEcCc-c
Confidence 5678999999 6 79999999999999999999999999999999999999999999974221 00000000 0
Q ss_pred cccchhHHHH--HHhhccCCcccccccCCceEe---cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 160 TWKTFNEVQK--LLSKTNGKMVGDLMTPAPVVV---RETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 160 ~~~~~~~~~~--~~~~~~~~~v~~~m~~~~~~v---~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.-..+....+ ...-..+.++++++...|..+ +..++...+.++|.+.++...|++. ...+.||++-++.++.
T Consensus 315 ~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 315 KSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS 391 (546)
T ss_pred ccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence 0000000000 000112345667777766554 4466778899999999988777776 3467888877776643
No 105
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.48 E-value=2.8e-07 Score=74.93 Aligned_cols=60 Identities=37% Similarity=0.544 Sum_probs=56.4
Q ss_pred cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
...++.++|.++++++.+++++.++..+|.+.+++..||+|+ ++++|++|.+|+.+++++
T Consensus 170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~ 229 (294)
T COG2524 170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIAN 229 (294)
T ss_pred CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHc
Confidence 467899999999999999999999999999999999999994 599999999999999886
No 106
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.48 E-value=4.8e-07 Score=64.19 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=66.8
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~ 110 (245)
++..+..+.++.+++..+.+... .++... .+. ....+-++..|+.... .+.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd------~~~-------~~~~Givt~~Dl~~~~-~~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWD------SRK-------QQFVGMLTITDFILIL-RLVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEe------CCC-------CEEEEEEEHHHHhhhe-eeEEeCCCCcHHHHHHH
Confidence 34567788899999988765553 333221 100 0111233555554431 16789999999999999
Q ss_pred HHhcCCceeEEEcCC-CcEEEEEehhhhhh
Q 025984 111 LVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (245)
Q Consensus 111 ~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~ 139 (245)
|.+++.+.+||+|++ |+++|+|+.+|++.
T Consensus 68 m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 68 LLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 999999999999987 99999999999874
No 107
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.48 E-value=3.6e-07 Score=66.63 Aligned_cols=55 Identities=38% Similarity=0.556 Sum_probs=51.0
Q ss_pred CcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 177 KMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 177 ~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.++.++|.+.+.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5688999888999999999999999999999999999998899999999999864
No 108
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=5.8e-07 Score=64.46 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=71.3
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc-ccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR-SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALE 109 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~ 109 (245)
.+.++..+.+..++...+..+.. .++...+ ......-....+. ......++.++|.. ++.++++++++.++.+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~---~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~ 77 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA---GKDPDTTIEKVMTK--NPITVNPKTSVASVAH 77 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHh---cccccccHHHHhcC--CCeEECCCCCHHHHHH
Confidence 34566778888888888765543 2222211 1111100000000 01134578899987 7899999999999999
Q ss_pred HHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 110 ~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.|.+++...+||++++|+++|+++..|+.+
T Consensus 78 ~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 78 MMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999998899999999999874
No 109
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.47 E-value=2.7e-07 Score=76.46 Aligned_cols=62 Identities=29% Similarity=0.522 Sum_probs=57.3
Q ss_pred HhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 171 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.....+....++|.++++++.+++++.++.+++.+++++.+||+|++.+++|+||.+|+++.
T Consensus 239 ~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 239 RRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH 300 (382)
T ss_pred HHHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence 34456778899999999999999999999999999999999999999999999999999983
No 110
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.46 E-value=1.2e-06 Score=79.82 Aligned_cols=162 Identities=23% Similarity=0.300 Sum_probs=101.0
Q ss_pred cccccccCCCCchhhhhhhhccCC-ccccccc-cc----ccccccccccCCCCCCCCcceeccccc-CCCceeEECCCCC
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRR-SS----AVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTT 103 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~ 103 (245)
.+..++..+.++.++...+.++.. .++...+ .. +...+... . .....++.++|. . ++++++++++
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-----~-~~~~~~V~dim~~~--~~v~v~~~~s 166 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-----E-TDLSQPVSEVMTKE--RLVTVPEGTT 166 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-----c-ccCCCcHHHHcCCC--CCEEECCCCC
Confidence 445667778888888888766553 3332221 11 11111100 0 112357889997 4 6899999999
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccc
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLM 183 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m 183 (245)
+.++++.|.+++.+.+||+|++|+++|+|+.+|+++....... .. .......+...|
T Consensus 167 l~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a-------~~----------------d~~g~l~V~aai 223 (486)
T PRK05567 167 LEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNA-------CK----------------DEQGRLRVGAAV 223 (486)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCc-------cc----------------ccCCCEEEEeec
Confidence 9999999999999999999999999999999999975311000 00 000122334444
Q ss_pred cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHHHH
Q 025984 184 TPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVR 231 (245)
Q Consensus 184 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~vGiIt~~dll~ 231 (245)
..+ + . -.+....|.+.+.+.+ |+|. +|+..|+++.-+.++
T Consensus 224 ~~~-----~-~-~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~ 264 (486)
T PRK05567 224 GVG-----A-D-NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIK 264 (486)
T ss_pred ccC-----c-c-hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHH
Confidence 432 2 1 2677777888999855 5554 576666555444443
No 111
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.45 E-value=4.5e-07 Score=68.53 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=56.0
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
......+|+.+.+.+.+++++.++.++|++.|++.+||+++ |+++|-||.+++.+.+.+..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc
Confidence 44667899999999999999999999999999999999995 89999999999999987664
No 112
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.42 E-value=1.1e-06 Score=63.41 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=72.2
Q ss_pred cccccccCCCCchhhhhhhhccCC-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+++.+..+.++.++...+..... .++. ..+.+ +...+...... ........++.++|.+ +...+.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~~ 78 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTR--NPKTIDPDALA 78 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhcc--CCeEECCCCcH
Confidence 346667778888888877754432 2222 22221 11111111000 0112233479999988 78899999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.++++.|.+++...+||++++|+++|+|+..|+++
T Consensus 79 ~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 79 AEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999998899999999999874
No 113
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.42 E-value=7.6e-07 Score=64.48 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=68.4
Q ss_pred ccccCCCCchhhhhhhhccC-C-cccc-ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCC--CCHH
Q 025984 34 PCLLLSRPGCRVFSVLATSS-D-RVSA-LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPT--TTVD 105 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~-~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~v~ 105 (245)
.++..+.++.++...+.... . .++. ..+.. +...+...... ........++.++|.. +++++.++ +++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l~ 80 (115)
T cd04620 4 LTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQ--PVVTLQESEIQDIF 80 (115)
T ss_pred eEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCC--CcEEEecccccCHH
Confidence 45567777888888775544 2 2222 22111 11111110000 0111224578899987 78888887 7899
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 9999999999999999998899999999999975
No 114
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=7.3e-07 Score=64.59 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=70.5
Q ss_pred cccccCCCCchhhhhhhhccCC-ccccc-cc-cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSAL-RR-SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
++.+..+.++.++...+.++.. .++.. .+ .. +...+....+..........++.++|.. +++++++++++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~ 80 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIK 80 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCCHH
Confidence 4556677778888888765553 33321 11 11 1111111100000112234678899987 799999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++++.|.+.+...+||+|+ |+++|+|+..|+.+
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 9999999999999999997 89999999999875
No 115
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.37 E-value=9.7e-07 Score=64.46 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=69.6
Q ss_pred cccccCCCCchhhhhhhhccCC-c--cccccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-R--VSALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
..++..+.++.++...+..+.. . +....+.. +...+...... ........++.++|....+++++++++++.+
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 81 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI-GGADLQKVPVGVIMTRMPNITTTTPEESVLE 81 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH-cCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence 3456677788888877754432 2 22222211 11111111000 1122345678888873225889999999999
Q ss_pred HHHHHHhcCCceeEEEcCC---CcEEEEEehhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA 139 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~---g~~~Giv~~~dl~~ 139 (245)
++++|.+++++.+||+|++ |+++|+|+..|+.+
T Consensus 82 ~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 82 AAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 9999999999999999987 68999999999864
No 116
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=8.8e-07 Score=64.09 Aligned_cols=104 Identities=20% Similarity=0.232 Sum_probs=69.4
Q ss_pred cccccCCCCchhhhhhhhccC-C-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSS-D-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~-~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
++.+..+.++.++...+.... . .++. ..+.+ +...+.... . .......++.++|.+...++.+.+++++.
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~-~--~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAI-P--TSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHH-H--HhhccccchhhhhcccccceEECCCCcHH
Confidence 556677888888888764432 2 2222 22221 111111000 0 00112457888997532467899999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++++.|.+++.+.+||+|++|+++|+++.+|+.+
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 80 EVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999999999998889999999999874
No 117
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.35 E-value=1.2e-06 Score=63.10 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=72.1
Q ss_pred cccccCCCCchhhhhhhhccCC-cccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
++.+..+.++.++...+.++.. .++... +.. +...+...... ........++.++|.+ ++.++.+++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~ 79 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF-DPSLYDLVVASDIMTK--PPVVVYPEDSLED 79 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh-cccccccEEHHHhccC--CCcEEcCCCCHHH
Confidence 3456677888888888876543 233221 111 12222111000 0112233689999988 7999999999999
Q ss_pred HHHHHHhcCCceeEEEcC-CCcEEEEEehhhhhh
Q 025984 107 ALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA 139 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~-~g~~~Giv~~~dl~~ 139 (245)
+++.|.+.+.+.+||+++ +|+++|+++.+|+..
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 999999999999999997 789999999999874
No 118
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.35 E-value=2.5e-06 Score=60.18 Aligned_cols=92 Identities=26% Similarity=0.398 Sum_probs=66.9
Q ss_pred cccccCCCCchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEIL 111 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~ 111 (245)
++++..+.++.+++..+.+... .++... .. ....+-++..+++... .+.++.+++++.++++.|
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d------~~--------~~~~Giv~~~dl~~~~-~~~~v~~~~~l~~a~~~m 67 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVLD------DD--------GKLSGIITERDLIAKS-EVVTATKRTTVSECAQKM 67 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEEC------CC--------CCEEEEEEHHHHhcCC-CcEEecCCCCHHHHHHHH
Confidence 4567778888888888765543 233221 10 1112334555655432 378899999999999999
Q ss_pred HhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 112 VEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 112 ~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.+++.+.+||++++|+++|+|+.+|+.+
T Consensus 68 ~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 68 KRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999998889999999999875
No 119
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.33 E-value=1.3e-06 Score=64.06 Aligned_cols=56 Identities=38% Similarity=0.639 Sum_probs=51.7
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..++.++|.. ++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.+
T Consensus 68 ~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 4478899987 7999999999999999999999999999998899999999999875
No 120
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.32 E-value=2e-06 Score=61.81 Aligned_cols=103 Identities=24% Similarity=0.247 Sum_probs=69.0
Q ss_pred ccccCCCCchhhhhhhhccCC-cccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
.++..+.++.++...+..... .++... +.+ ++..+...............+++++|.+ ++.++.+++++.++
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 81 (113)
T cd04623 4 ITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVDEA 81 (113)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHHHH
Confidence 345667778888877765543 333221 211 1111111000100111224578999987 78999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.|.+.+.+.+||+++ |+++|+|+..|+.+
T Consensus 82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 99999999999999987 89999999999874
No 121
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.32 E-value=1.1e-05 Score=72.93 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=73.1
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
...++..+.++.++...+.++.. .++...+.. +...+. .. .....++.++|++ +++++++++++.+
T Consensus 97 ~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL----~~---~~~~~~V~dIMt~--~litv~~~~sL~e 167 (475)
T TIGR01303 97 TPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDL----LG---VDRFTQVRDIMST--DLVTAPADTEPRK 167 (475)
T ss_pred CCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHh----hc---CCCCCCHHHHccC--CceEeCCCCcHHH
Confidence 34466778889999888876554 222111111 111111 00 0123579999998 8999999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
++++|.++++..+||+|++|+++|+|+.+||.+.
T Consensus 168 Al~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~ 201 (475)
T TIGR01303 168 AFDLLEHAPRDVAPLVDADGTLAGILTRTGALRA 201 (475)
T ss_pred HHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 9999999999999999988999999999999975
No 122
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.32 E-value=1.9e-06 Score=61.72 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=70.6
Q ss_pred cccccCCCCchhhhhhhhccCC-cccccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
++.+..+.++.++...+.+... .++... +.+ +...+...... .......+++++|.+ ++.++++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~--~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~ 78 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA--SGPDLQTPVGEVMSS--PLLTVPADTSLYDA 78 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh--cCCCCCcCHHHhcCC--CceEECCCCCHHHH
Confidence 4566777788888887765443 232221 111 11111110000 011145678899987 78999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.|.+.+...+||+|++|++.|+|+.+|+.+
T Consensus 79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999998899999999999874
No 123
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.31 E-value=2e-06 Score=78.31 Aligned_cols=102 Identities=23% Similarity=0.223 Sum_probs=75.1
Q ss_pred ccccCCCCchhhhhhhhccCC-ccccccc----c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVSALRR----S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
+.+.++.++.++...+.++.. .++...+ . -+...+..+ .......+|.++|++..+++++++++++
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~-----~~~~~~~~V~dIMt~~~~~itv~~d~~l 182 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRI-----SRMSLDTKVKDFMTPFEKLVTANEGTTL 182 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhc-----cccCCCCCHHHHhCCCCCeEEECCCCcH
Confidence 567788899999988876654 2222211 1 111122111 0123456899999964468899999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.+++++|.++++..+||+|++|+++|+||.+|+++.
T Consensus 183 ~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 183 KEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 999999999999999999988999999999999875
No 124
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.31 E-value=2.2e-06 Score=62.07 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=68.3
Q ss_pred ccccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
+.+..+.++.++...+.+... .++ ...+.. +...+...... ........++.++|.. ++.++.+++++.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~ 80 (115)
T cd04593 4 PVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATP--PLLTVHPDEPLAHA 80 (115)
T ss_pred cEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccC--CceEECCCCCHHHH
Confidence 345567778888877765543 222 221111 11111100000 0111123357888887 79999999999999
Q ss_pred HHHHHhcCCceeEEEcCC--CcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~--g~~~Giv~~~dl~~ 139 (245)
+++|.+++...+||+|++ |+++|+|+..|+.+
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 999999999999999987 79999999999875
No 125
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.31 E-value=2.9e-06 Score=60.37 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=67.5
Q ss_pred cccccCCCCchhhhhhhhccCC-cccc--cccccc---cccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
++.+..+.+..+++..+.+... .+.. ..+.+. ...+. + .....++.++|.+ ....+.+++++.+
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl-~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~ 72 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREA-A-------RASGGCCGDHAEP--FKVTVSVDDDLRI 72 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHH-H-------Hhcccchhhhccc--CCEEECCCCCHHH
Confidence 3455667778888877755543 2222 222221 11110 0 0012357888987 6788999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+++.|.+++...+||+|++|+++|+|+.+|+..
T Consensus 73 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 73 VLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999998899999999999874
No 126
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.30 E-value=2.1e-06 Score=74.20 Aligned_cols=104 Identities=19% Similarity=0.186 Sum_probs=74.8
Q ss_pred cccccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
++.+..+.++.++...+..... .++ ...+.+ ....+...... .......++.++|++ ++.++.+++++.+
T Consensus 209 ~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~--~~~~~~~~v~~im~~--~~~~v~~~~~l~~ 284 (321)
T PRK11543 209 IPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV--GGGALTTPVNEAMTR--GGTTLQAQSRAID 284 (321)
T ss_pred CcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh--CCCCcCCcHHHhcCC--CCEEECCCCCHHH
Confidence 6778889999999988865543 333 222211 11111110000 111234568999998 8999999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
+++.|.+++...+||+|++|+++|+|+..|+.++
T Consensus 285 a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 285 AKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred HHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 9999999999999999988899999999999864
No 127
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.30 E-value=5.7e-06 Score=74.90 Aligned_cols=101 Identities=22% Similarity=0.234 Sum_probs=74.7
Q ss_pred cccccccCCCCchhhhhhhhccCC-ccccc-ccc-c---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSAL-RRS-S---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
....++..+.++.++...+.++.. .++.. .+. + ....+. .. .....++.++|+. +++++++++++
T Consensus 97 ~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL-~~------~~~~~~V~diMt~--~~itV~~d~sL 167 (479)
T PRK07807 97 DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADC-AG------VDRFTQVRDVMST--DLVTLPAGTDP 167 (479)
T ss_pred cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHH-hc------CccCCCHHHhccC--CceEECCCCcH
Confidence 445677888899999998876653 22221 111 1 111111 00 0123479999998 89999999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.++++.|.+++...+||+|++|+++|+|+.+||.+.
T Consensus 168 ~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~ 203 (479)
T PRK07807 168 REAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRA 203 (479)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 999999999999999999988999999999999975
No 128
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.29 E-value=2.1e-06 Score=61.30 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=69.3
Q ss_pred cccccCCCCchhhhhhhhccCC-ccccc--cccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSAL--RRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
...+..+.+..++...+.+... .++.. .+.+ +...+... ......++.++|.+ .+..+++++++.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~------~~~~~~~v~~~~~~--~~~~v~~~~~~~~ 75 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQ------AYKEAKSLEDIMLE--DVFTVQPDASLRD 75 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHH------HhhcCCcHhHhhcC--CceEECCCCcHHH
Confidence 4456677788888888765543 22221 1111 11111000 00123468888987 7899999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+.+.|.+.+...+||++++|+++|+++.+|+++
T Consensus 76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999998899999999999874
No 129
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.28 E-value=3.5e-06 Score=50.40 Aligned_cols=47 Identities=51% Similarity=0.784 Sum_probs=42.9
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 187 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56789999999999999999999999999878999999999998764
No 130
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.27 E-value=3.4e-06 Score=59.87 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=66.8
Q ss_pred ccccCCCCchhhhhhhhccCC-cccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHHHH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILV 112 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~ 112 (245)
..+..+.+..++...+.++.. .++...+..+...-....+. . .....++.++|.+ ++..+++++++.++++.|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~--~-~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~ 78 (105)
T cd04599 4 ITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVR--R-AHPNRLVADAMTR--EVVTISPEASLLEAKRLME 78 (105)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhh--c-ccccCCHHHHccC--CCEEECCCCCHHHHHHHHH
Confidence 345667777888877765543 23222121111000000000 0 0123468889987 7999999999999999999
Q ss_pred hcCCceeEEEcCCCcEEEEEehhhhh
Q 025984 113 EKRITGFPVIDDDWKLVGLVSDYDLL 138 (245)
Q Consensus 113 ~~~~~~~~Vvd~~g~~~Giv~~~dl~ 138 (245)
+++...+||+|+ |+++|+|+.+|+.
T Consensus 79 ~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 79 EKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred HcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 999999999997 8999999999986
No 131
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.27 E-value=2.2e-06 Score=61.87 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=50.6
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~ 138 (245)
..++.++|.+ .+.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 3468899987 788999999999999999999999999999889999999999986
No 132
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.26 E-value=2.8e-06 Score=62.41 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=46.3
Q ss_pred ccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh
Q 025984 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (245)
Q Consensus 87 ~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~ 138 (245)
++|.. ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+.
T Consensus 72 ~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 72 TIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 46766 789999999999999999999999999999889999999999986
No 133
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.26 E-value=4.7e-06 Score=59.55 Aligned_cols=99 Identities=22% Similarity=0.223 Sum_probs=67.1
Q ss_pred cccccCCCCchhhhhhhhccCC-ccc--ccccccc---cccccccccCCCCCCCCcceecccccCCCceeEECC-CCCHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVS--ALRRSSA---VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP-TTTVD 105 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~v~ 105 (245)
...+..+.++.++...+.+... .++ ...+.+. ...+... ......++.++|.. .+..+.. ++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~------~~~~~~~v~~~~~~--~~~~~~~~~~~l~ 75 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF------ETDLDKPVSEVMTP--ENLLTTVEGTSLE 75 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee------cccCCCCHHHhccc--CceEEecCCCCHH
Confidence 4456667778888877754443 222 2222211 1111100 01134578899976 5666666 99999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus 76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999999999999998899999999999874
No 134
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.26 E-value=4.6e-06 Score=59.99 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=69.1
Q ss_pred cccccCCCCchhhhhhhhccCC-cccccccccc----cccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
++++..+.++.++...+.+... .++...+..+ ...+...............++.++|.. .+.++.+++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 80 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDVDEA 80 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCHHHH
Confidence 4456677778888877765433 2222111111 101100000000111223358899987 78999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.+.|...+...+||++++|+++|+++..|+.+
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999874
No 135
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.26 E-value=3e-06 Score=61.37 Aligned_cols=103 Identities=20% Similarity=0.200 Sum_probs=67.0
Q ss_pred cccccCCCCchhhhhhhhccCC-cccc-cc---cccccccccccccCCCCCCCCcceecccccCCCceeEECC--CCCHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSA-LR---RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP--TTTVD 105 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~--~~~v~ 105 (245)
..++..+.++.++...+..... .++. .. +..+...-....+.... ....+++++|.. ....+.. ++++.
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~--~~~~~v~~~~~~--~~~~~~~~~~~~l~ 79 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT--DSETPLSEVMTP--REVLVVAPTGITLE 79 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh--ccCCCHHHhcCC--CceEEECCCCCCHH
Confidence 3455677788888888765442 2222 11 11111100000000000 123458899987 5667755 99999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++++.|.+++...+||++++|+++|+|+.+|+.+
T Consensus 80 ~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 80 EANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999998899999999999874
No 136
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.25 E-value=4.5e-06 Score=61.01 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=45.1
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|++.+..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 4678999999999999999999999999998899999999999997653
No 137
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=2.5e-06 Score=61.22 Aligned_cols=101 Identities=24% Similarity=0.302 Sum_probs=70.1
Q ss_pred cccccCCCCchhhhhhhhccCC-cccccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
++++..+.++.++...+..... .++... +.+ +...+..... .......++.++|.+ ++..+.+++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~---~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~ 78 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKAL---RHGLGHAPVKDYMST--DVVTVPPDTPLSEV 78 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHH---hcccccCcHHHHhcC--CCEEECCCCcHHHH
Confidence 4566677788888888764443 333221 221 1111111100 111145678899987 78999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.|.+++...+||++ +|+++|+|+..|+.+
T Consensus 79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 9999999999999999 789999999999874
No 138
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.24 E-value=2.7e-06 Score=61.10 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=69.3
Q ss_pred ccccCCCCchhhhhhhhccCC-ccccc-cccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVSAL-RRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL 108 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~ 108 (245)
+++..+.++.++...+.++.. .++.. .+.. +...+...... ........++.++|.+ ++..+++++++.+++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~ 80 (111)
T cd04589 4 LIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATF--PLITVDPDDFLFNAL 80 (111)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCC--CcEEECCCCcHHHHH
Confidence 456677888888888765543 23321 1111 11111100000 0112234578899987 799999999999999
Q ss_pred HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+.|.+++...+||+|+ |+++|+|+..|+.+
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 9999999999999985 89999999999874
No 139
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.24 E-value=5.4e-06 Score=62.30 Aligned_cols=50 Identities=36% Similarity=0.474 Sum_probs=46.2
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
++.++.+++++.++++.|.+.+...+||+|++|+++|+||..|+++++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 46889999999999999999999999999988999999999999998764
No 140
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=2.2e-06 Score=62.57 Aligned_cols=56 Identities=38% Similarity=0.657 Sum_probs=50.8
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
...++.++|.. ++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 34578888987 7999999999999999999999999999998 89999999999874
No 141
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.23 E-value=2.8e-06 Score=60.93 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=68.9
Q ss_pred cccccCCCCchhhhhhhhccCC-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
++.+..+.++.++...+.+... .++. ..+.+ ....+...... ....++.++|.. ++..+.+++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~-----~~~~~~~~~~~~--~~~~v~~~~~l~~ 76 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA-----RDKKSVEDIMTR--NVITATPDEPIDV 76 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-----hCccCHHHhcCC--CCeEECCCCcHHH
Confidence 4456777888888887765543 2322 21221 11111100000 012358888877 7899999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+++.|.+++...+||++++|+++|+|+..|+.+
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999998899999999999863
No 142
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.23 E-value=2.4e-06 Score=61.47 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=69.3
Q ss_pred cccccCCCCchhhhhhhhccCC-cccc-ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSA-LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
++.+..+.++.++...+.++.. .+.. ..+.+ +...+...............++.++|.+ ++.++.+++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l~~~ 80 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPVLEA 80 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCHHHH
Confidence 4455667778888877765443 2221 11211 1111110000000111112578899987 78899999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.|.+++...+||++++|+++|+|+..|++.
T Consensus 81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 81 LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 99999999999999998899999999999874
No 143
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.22 E-value=3.1e-06 Score=75.49 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=78.8
Q ss_pred cccccccCCCCchhhhhhhhccCC-ccccccccc------ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 103 (245)
.++.++..+.+..++...+.++.. .+|.+++.. .+..+...... . ....+.++|++ +.+++++++
T Consensus 201 ~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~--~---~~~~l~~~~~~---~~~Vpe~~~ 272 (408)
T TIGR03520 201 LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN--K---KNFDWQSLLRE---PYFVPENKK 272 (408)
T ss_pred HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc--c---CCCCHHHHcCC---CeEeCCCCc
Confidence 346678889999999999887776 888776531 12222211001 0 23457788876 789999999
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+.++++.|++++.+.++|+|+.|..+|+||.+|++...
T Consensus 273 l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei 310 (408)
T TIGR03520 273 LDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI 310 (408)
T ss_pred HHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 99999999999999999999999999999999999863
No 144
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.22 E-value=3.1e-06 Score=61.57 Aligned_cols=56 Identities=39% Similarity=0.748 Sum_probs=51.4
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..++.++|.+ ++.++++++++.++++.|.+.+...+||++++|+++|+|+..|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 4578899987 7999999999999999999999999999998899999999999875
No 145
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.21 E-value=3.5e-06 Score=60.45 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=51.9
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
..+++++|.+ ++..+.+++++.++++.|...+...+||+|++|+++|+|+..|++++
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 4578899987 78999999999999999999999999999988999999999999863
No 146
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.21 E-value=3.5e-06 Score=59.98 Aligned_cols=98 Identities=16% Similarity=0.262 Sum_probs=67.7
Q ss_pred cccccCCCCchhhhhhhhccCC-cccccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
++.+..+.+..++...+..... .++... +.+ ++..+... .....+++++|.+ .+.++.+++++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~-------~~~~~~~~~~~~~--~~~~v~~~~~l~~~ 74 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLG-------KDPDETVEEIMSK--DLVVAVPEMDIMDA 74 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc-------cCccccHHHhCCC--CCeEECCCCCHHHH
Confidence 3455667777787777654332 222211 111 11111100 0123468899987 78999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.|.+++...+||++++|+++|+++..|+++
T Consensus 75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 75 ARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999998899999999999874
No 147
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=2.9e-06 Score=62.70 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=66.2
Q ss_pred ccccCCCCchhhhhhhhccCC-ccc--cccccc---ccccccccc-----cCCCCCCCCcceecccccCCCceeE--E--
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVS--ALRRSS---AVFASGTLT-----ANSAAPSSGVYTVGDFMTTKEELHV--V-- 98 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~v~~im~~~~~~~~--v-- 98 (245)
..+..+.++.++...+.++.. .++ ...+.. +...+.... ...........++.++|.+ +... +
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~~~~ 81 (126)
T cd04640 4 IVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKALDL 81 (126)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhccccH
Confidence 345667788888888765553 222 211111 111221110 0000012235678999986 4333 3
Q ss_pred --CCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhh
Q 025984 99 --KPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (245)
Q Consensus 99 --~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~ 139 (245)
.+++++.++++.|.+++.+.+||+|++ |+++|+|+.+|+.+
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 368899999999999999999999986 78999999999874
No 148
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.20 E-value=3.9e-06 Score=60.41 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=69.3
Q ss_pred cccCCCCchhhhhhhhccCC-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984 35 CLLLSRPGCRVFSVLATSSD-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL 108 (245)
Q Consensus 35 ~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~ 108 (245)
++..+.+..+++..+.+... .++. ..+.+ +...+...... ....+...++.++|.. ++.++..++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~ 81 (113)
T cd04615 5 CVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYAL-ESEELKDAKVREVMNS--PVITIDANDSIAKAR 81 (113)
T ss_pred EeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhh-hhhhhcCCcHHHhccC--CceEECCCCcHHHHH
Confidence 44566777888777765543 2222 21121 11111111000 1122345678899987 789999999999999
Q ss_pred HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+.|.+++...+||+|++|+++|+++..|+.+
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999998899999999999874
No 149
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.20 E-value=4.1e-06 Score=76.38 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=79.0
Q ss_pred cccccccccCCCCchhhhhhhhccCC-ccccccc----cc----ccccccccccCCCCCCCCcceecccccCCCceeEEC
Q 025984 29 FALQLPCLLLSRPGCRVFSVLATSSD-RVSALRR----SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVK 99 (245)
Q Consensus 29 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~ 99 (245)
+..+..++..+.++.++...+.++.. .++...+ .. ....+... ......+|.++|++..++++++
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~------v~~~~~~V~eIMt~~~~lvtv~ 179 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF------VNDRETKLSEVMTSDDDLVTAP 179 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh------ccccCCcHHHHhccCCCcEEEC
Confidence 44567778889999999988876664 3332221 11 11111100 0123568999999732388999
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (245)
Q Consensus 100 ~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~ 142 (245)
+++++.++++.|.+++...+||+|++|+++|+|+.+|+.+...
T Consensus 180 ~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 180 AGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 9999999999999999999999999999999999999998754
No 150
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=3.6e-06 Score=60.47 Aligned_cols=102 Identities=24% Similarity=0.284 Sum_probs=69.1
Q ss_pred cccccCCCCchhhhhhhhccCC-cccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
++.+..+.++.++...+.+... .++... +.+ +...+... .. ........++.++|.. ++.++.+++++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~-~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~ 78 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILD-LD-LFESFLEKKVFNIVSQ--DVFYVNEEDTIDE 78 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHH-HH-hhcccccCcHHHHhcC--CcEEEcCCCcHHH
Confidence 4556677788888888765543 333221 111 11111100 00 0011123478888987 7899999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+++.|.+++...+||+++ |+++|+|+..|+..
T Consensus 79 ~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 79 ALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 999999999999999997 89999999999863
No 151
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=4.2e-06 Score=61.12 Aligned_cols=57 Identities=39% Similarity=0.612 Sum_probs=51.7
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
...++.++|.. ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+..
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 35678889987 7899999999999999999999999999998889999999999874
No 152
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=3.6e-06 Score=60.42 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=50.5
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.++.++|.. ++..+.+++++.++++.|.+++...+||++++|+++|+++..|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 478899987 7999999999999999999999999999998799999999999874
No 153
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.18 E-value=3.9e-06 Score=61.31 Aligned_cols=57 Identities=32% Similarity=0.538 Sum_probs=51.5
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
...++.++|.. ++..+..++++.++++.|.+++.+.+||+|++|+++|+++..|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 34578888877 7899999999999999999999999999998899999999999874
No 154
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.17 E-value=4e-06 Score=61.51 Aligned_cols=56 Identities=41% Similarity=0.723 Sum_probs=50.9
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..++.++|.+ +++++++++++.++++.|.+.+...+||+|++|+++|+|+..|+.+
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3478888887 7999999999999999999999999999998789999999999875
No 155
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.17 E-value=4.1e-06 Score=60.24 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=49.8
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..++.++|.. ++.++.+++++.++++.|.+++...+||++ +|+++|+|+.+|+.+
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 3578899987 788999999999999999999999999998 589999999999874
No 156
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.16 E-value=3.5e-06 Score=60.50 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=67.1
Q ss_pred cccccCCCCchhhhhhhhccCC-ccc--ccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVS--ALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
+.++..+.++.++...+.++.. .++ ... +.+ +...+...... . .....++.++|. ++..+.+++++.
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~--~-~~~~~~~~~~~~---~~~~v~~~~~l~ 76 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA--E-GEEDLDLRDLLR---PPLFVPESTPLD 76 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH--c-CCCcCCHHHHhc---CCeecCCCCcHH
Confidence 4556778888888888876543 222 222 211 11111000000 0 011145666664 478899999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++++.|.+++.+.+||+|++|+++|+|+..|+.+
T Consensus 77 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 77 DLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 9999999999999999998899999999999873
No 157
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.16 E-value=1.3e-05 Score=70.68 Aligned_cols=121 Identities=25% Similarity=0.359 Sum_probs=94.6
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEc-CCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd-~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (245)
.+..+.+..++.++...+.+++++++||.| +.|.+.++++.+-+++.....+... | + .
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~------------~--~-------~ 221 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL------------P--L-------P 221 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc------------c--c-------H
Confidence 348899999999999999999999999999 4589999999999998754222211 1 0 0
Q ss_pred hccCCcccccc---cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 173 KTNGKMVGDLM---TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 173 ~~~~~~v~~~m---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.....++.++- -.+...+.+++++.+|+++|...++..+||||++|+.+|+++..|+.....+
T Consensus 222 ~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~ 287 (381)
T KOG1764|consen 222 SLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE 287 (381)
T ss_pred HHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence 11123333321 1257889999999999999999999999999999999999999999877654
No 158
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.16 E-value=6.7e-06 Score=58.99 Aligned_cols=103 Identities=22% Similarity=0.189 Sum_probs=68.8
Q ss_pred cccccCCCCchhhhhhhhccCC-cccccc-ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALR-RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
+.++..+.++.++...+.+... .++... +.+ +...+...... ........++.++|.. +++.+++++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~ 79 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVV-AEGLDPDTPVSEVMTA--PPITIPPDATVFEA 79 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHh-ccCCCccCCHHHHhCC--CCeEECCCCcHHHH
Confidence 3445667778888877765443 232211 211 11111100000 0111234578899987 79999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.|.+++...+||+++ |+++|+++..|+.+
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 80 LLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 99999999999999987 89999999999874
No 159
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.13 E-value=8e-06 Score=58.67 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=67.6
Q ss_pred ccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL 108 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~ 108 (245)
..+..+.++.++...+..+.. .++...+.. +...+...............++.++|.+ ++..+.+++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~ 81 (112)
T cd04802 4 ITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASLNEAA 81 (112)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCCHHHHH
Confidence 345567778888877765543 222211111 1111110000000111234578899987 789999999999999
Q ss_pred HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+.|.+++...+||+|++ +++|+|+..|+..
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999875 8999999999873
No 160
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.12 E-value=7.2e-06 Score=61.59 Aligned_cols=55 Identities=31% Similarity=0.583 Sum_probs=50.3
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..++.++|.+ ++..+.+++++.++++.|.+++.+.+||+++ |+++|+|+..|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4578999987 7889999999999999999999999999987 89999999999874
No 161
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.11 E-value=6e-06 Score=60.16 Aligned_cols=56 Identities=38% Similarity=0.595 Sum_probs=50.6
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
...++.++|.. ++.++..++++.++++.|.+++...+||+++ |+++|+++.+|+.+
T Consensus 65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 44678899988 7899999999999999999999999999987 89999999999874
No 162
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.10 E-value=1.7e-05 Score=58.55 Aligned_cols=51 Identities=37% Similarity=0.625 Sum_probs=46.3
Q ss_pred CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 185 PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 185 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
+++.++.++.++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++.+..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence 357889999999999999999999999999988999999999999987654
No 163
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.10 E-value=4.8e-06 Score=62.26 Aligned_cols=55 Identities=38% Similarity=0.498 Sum_probs=50.6
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+| +|+++|+|+.+|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 4578899987 799999999999999999999999999999 799999999999874
No 164
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.10 E-value=8.8e-06 Score=74.15 Aligned_cols=104 Identities=22% Similarity=0.217 Sum_probs=76.1
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc----ccc----cccccccccCCCCCCCCcceecccccCCCceeEECCCC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR----SSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT 102 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~ 102 (245)
...++..+.++.++...+.++.. .++...+ ..+ ...+... ......++.++|++..+++++++++
T Consensus 105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~------~~~~~~~V~diMt~~~~lvtv~~~~ 178 (495)
T PTZ00314 105 DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF------VKDKSTPVSEVMTPREKLVVGNTPI 178 (495)
T ss_pred CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh------cccCCCCHHHhhCCcCCceEeCCCC
Confidence 34577888899999988876654 3332221 111 1111100 0113467999998654689999999
Q ss_pred CHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 103 ~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
++.++.++|.+++...+||+|++++++|+||.+|+.+..
T Consensus 179 sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 179 SLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 999999999999999999999999999999999999763
No 165
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.09 E-value=8.5e-06 Score=58.34 Aligned_cols=55 Identities=22% Similarity=0.412 Sum_probs=50.2
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.++.++|.. ++.++++++++.++++.|.+.+.+.+||++++|+++|+|+..|+.+
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 568888877 7899999999999999999999999999998899999999999874
No 166
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.08 E-value=1.1e-05 Score=57.82 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=64.1
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc----ccccccccccccCCCCCCCCcceecc-------cccCCCceeEEC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR----SSAVFASGTLTANSAAPSSGVYTVGD-------FMTTKEELHVVK 99 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~-------im~~~~~~~~v~ 99 (245)
+++++..+.++.++...+.+... .++...+ ..+. +-.+..+ +|.+ ++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~---------------G~v~~~dl~~~~~~~m~~--~~~~v~ 65 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLV---------------GYILRSQLVVALKNYIDP--SPFTVS 65 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEE---------------EEEeHHHHHHHHHHhccC--CCceEC
Confidence 35667778888888877765532 2322211 1110 1111111 7877 788999
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 100 ~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+++++.++.+.|.+++...+||++ +|+++|+|+.+|+.+
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 66 PRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 999999999999999999999995 689999999999874
No 167
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.08 E-value=5.9e-06 Score=59.52 Aligned_cols=55 Identities=38% Similarity=0.607 Sum_probs=50.1
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..++.++|.+ ++..+.+++++.++++.|.+++...+||+|+ |+++|+|+.+|+.+
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 4578899987 7899999999999999999999999999997 89999999999874
No 168
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.08 E-value=1.1e-05 Score=59.44 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=46.2
Q ss_pred ccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 87 ~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+.|.. ++..+++++++.++++.|.+++.+.+||+|++|+++|+|+..|+.+
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 45655 7899999999999999999999999999998899999999999874
No 169
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.08 E-value=7.9e-06 Score=60.81 Aligned_cols=53 Identities=36% Similarity=0.605 Sum_probs=49.3
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 78889987 7899999999999999999999999999998 89999999999874
No 170
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.07 E-value=1e-05 Score=70.10 Aligned_cols=59 Identities=25% Similarity=0.243 Sum_probs=52.2
Q ss_pred CCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 176 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 176 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
..+++++|.+ +++++++++++.++++.|.+.+...+||+|++|+++|+||.+|+.+.+.
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 3468899987 8999999999999999999999888888898899999999999987543
No 171
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.06 E-value=6.5e-06 Score=70.15 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=75.8
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccccc------cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
++.++..+.++.++...+..... .++...+. -++..+...... . .....++.++|++ +.++++++++
T Consensus 78 ~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~--~-~~~~~~l~~l~r~---~~~V~e~~~l 151 (292)
T PRK15094 78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR--S-DAEAFSMDKVLRQ---AVVVPESKRV 151 (292)
T ss_pred HEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh--c-cCCcCCHHHHcCC---CcCcCCCCcH
Confidence 46688889999999988876664 66655432 111111111000 0 0112357889987 5689999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
.++++.|++++.+.+||+|+.|.++|+||.+|++..+
T Consensus 152 ~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~i 188 (292)
T PRK15094 152 DRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 188 (292)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHH
Confidence 9999999999999999999999999999999999863
No 172
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.05 E-value=1.1e-05 Score=57.66 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=68.2
Q ss_pred ccccCCCCchhhhhhhhccCC-ccccc-cccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVSAL-RRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEAL 108 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~ 108 (245)
..+..+.++.++...+.+... .++.. .+.+ ....+...... .......++.++|.+ ++..+.+++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~--~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~ 79 (111)
T cd04612 4 VTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPA--EGREATVLVGDVMTR--DPVTASPDETLRDAL 79 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHh--cCcccccCHHHhccC--CCeEECCCCCHHHHH
Confidence 345567788888887765443 33221 1221 11111100000 011111367788887 799999999999999
Q ss_pred HHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 109 ~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
+.|.+++.+.+||+|++|+++|+++..|+.+
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999999999998899999999999874
No 173
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.05 E-value=3.9e-05 Score=69.32 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=75.6
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccccc----c----ccccccccccCCCCCCCCcceeccccc-CCCceeEECCC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS----S----AVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPT 101 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~ 101 (245)
++.++..+.++.++...+.++.. .++...+. . .+..+... . .....++.++|+ . ++++++++
T Consensus 89 ~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~-----~-~~~~~~V~dvm~~~--~~~~V~~~ 160 (450)
T TIGR01302 89 DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF-----V-KDKGKPVSEVMTRE--EVITVPEG 160 (450)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh-----h-hcCCCCHHHhhCCC--CCEEECCC
Confidence 45677888899999988876654 44433221 1 11111100 0 112457899998 4 68999999
Q ss_pred CCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 102 ~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+++.++++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 9999999999999999999999999999999999999753
No 174
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.04 E-value=2.1e-05 Score=56.81 Aligned_cols=50 Identities=28% Similarity=0.456 Sum_probs=45.5
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.++++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~ 51 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG 51 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence 46789999999999999999999999999988999999999999987753
No 175
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.04 E-value=2.4e-05 Score=56.11 Aligned_cols=50 Identities=34% Similarity=0.522 Sum_probs=45.2
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 46789999999999999999999999999988999999999999887543
No 176
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.04 E-value=1e-05 Score=59.07 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=50.5
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.++.++|.. +++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 468888987 7999999999999999999999999999998899999999999875
No 177
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.02 E-value=1.3e-05 Score=57.09 Aligned_cols=53 Identities=30% Similarity=0.492 Sum_probs=48.2
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
++.++|.+ ...+++++.++.++++.|.+++...+||+| +|+++|+++..|+..
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 57788887 789999999999999999999999999998 589999999999874
No 178
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.02 E-value=2e-05 Score=47.03 Aligned_cols=46 Identities=41% Similarity=0.710 Sum_probs=41.9
Q ss_pred eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
+..+.+++++.++.+.|.+.+.+.+||++++++++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 5678999999999999999999999999988899999999998764
No 179
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.99 E-value=2.9e-05 Score=68.49 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
...-++++++|.+ .......+.+ .+++. ++...++|+|+ |+++..+...+..
T Consensus 270 ~~~~l~a~~~m~~--~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~---------------- 321 (382)
T TIGR03415 270 PLNVLTARSLMRP--LTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQA---------------- 321 (382)
T ss_pred cccceeHHHHhcc--cccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhh----------------
Confidence 4556688999966 2222333323 34433 67888999985 8888777654311
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
......+.+ +.....++++++++.+++..+.+.+. .++|+|+ |+++|+|++.++++++..
T Consensus 322 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 322 --------------WAAEQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred --------------cccccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 001334555 55567889999999999999888776 5888885 999999999999998753
No 180
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.98 E-value=3.5e-05 Score=56.82 Aligned_cols=49 Identities=41% Similarity=0.632 Sum_probs=44.5
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
++.++.+++++.+++++|.+.+...+||+|++|+++|+||..|+++.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~ 50 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV 50 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHh
Confidence 4678999999999999999999999999998899999999999987653
No 181
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.96 E-value=1.9e-05 Score=73.64 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=71.9
Q ss_pred cccccCCCCchhhhhhhhccCC-cccc--ccccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSA--LRRSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
.+.+..+.++.++...+.+... .++. ..+.. ....+...... ........++.++|++ ++.++++++++.+
T Consensus 457 ~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~-~~~~~~~~~v~dim~~--~~~~v~~d~~L~~ 533 (574)
T PRK01862 457 QTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLL-DKRDTTDKTAADYAHT--PFPLLTPDMPLGD 533 (574)
T ss_pred CceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhh-cccccccchHHHhccC--CCeeECCCCCHHH
Confidence 4456677888888888765543 2222 11111 11111111000 0112233578899988 7899999999999
Q ss_pred HHHHHHhcCCceeEEEcCC--CcEEEEEehhhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLAL 140 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~--g~~~Giv~~~dl~~~ 140 (245)
+.+.|.+++.+.+||+|++ ++++|+|+.+|+.++
T Consensus 534 al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~ 569 (574)
T PRK01862 534 ALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDA 569 (574)
T ss_pred HHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHH
Confidence 9999999999999999876 579999999999975
No 182
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.93 E-value=3.2e-05 Score=69.96 Aligned_cols=62 Identities=35% Similarity=0.538 Sum_probs=56.2
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
....++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+||.+|+++.+..
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA 393 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999988999999999999987653
No 183
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.92 E-value=2.6e-05 Score=65.93 Aligned_cols=115 Identities=28% Similarity=0.327 Sum_probs=88.2
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
...-++++++|.+......-.....-..+...+.......+.+++..++.+|+|+..++...
T Consensus 270 ~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------------ 331 (386)
T COG4175 270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------------ 331 (386)
T ss_pred hhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------------------
Confidence 44566889999852122222233344568888888887788888877779999999987641
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.+...+.++..++++.+.+....+.+. .++|+|++|+++|+|++..++.++..
T Consensus 332 -----------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 -----------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred -----------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 245567889999999999999888776 68899999999999999999998764
No 184
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=55.67 Aligned_cols=104 Identities=25% Similarity=0.335 Sum_probs=73.7
Q ss_pred cccccccCCCCchhhhhhhhccCC-cccccccc----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
...+++....+..++...+.++.. .++..... -+...+...... .......++.++|.. ++.++.++.++.
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~--~~~~~~~~v~~v~~~--~~~~~~~~~~~~ 82 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALA--AGGKRLLPVKEVMTK--PVVTVDPDTPLE 82 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHh--ccCCccccHHHhccC--CcEEECCCCCHH
Confidence 346677788889999999888875 44433321 111112111111 111111168999997 789999999999
Q ss_pred HHHHHHHh-cCCceeEEEcCCC-cEEEEEehhhhh
Q 025984 106 EALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL 138 (245)
Q Consensus 106 ~~~~~~~~-~~~~~~~Vvd~~g-~~~Giv~~~dl~ 138 (245)
++.+.|.+ +++..+||+++++ +++|+++..|+.
T Consensus 83 ~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 83 EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 99999999 6999999999886 999999999973
No 185
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.86 E-value=3.1e-05 Score=65.02 Aligned_cols=58 Identities=33% Similarity=0.436 Sum_probs=53.0
Q ss_pred CcccccccCC-ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 177 KMVGDLMTPA-PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 177 ~~v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
.++.++|.++ ++++.+++++.++++.|.+.+.+.++|+|++|+++|+|+..|+.+.+.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 5788999888 899999999999999999999999999998899999999999988653
No 186
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.86 E-value=3.8e-05 Score=69.14 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=75.3
Q ss_pred ccccCCCCchhhhhhhhccCC-cccc-cccccc----cccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVSA-LRRSSA----VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
+.+++..+..++...|..... .+.. ....|. ...+.... ..........+|+++|+. ++.++..++-+.+|
T Consensus 160 ~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~-v~~~g~~~~~~V~evmT~--p~~svd~~~~~feA 236 (610)
T COG2905 160 VTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSR-VIADGRSKTQKVSEVMTS--PVISVDRGDFLFEA 236 (610)
T ss_pred cccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHH-HHhcCCCcccchhhhhcc--CceeecCcchHHHH
Confidence 456678888888888875554 1221 122221 11111111 112345567799999999 89999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+-.|.+++++++||++ +|+++|+|+..||+...
T Consensus 237 ml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 237 MLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF 269 (610)
T ss_pred HHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence 9999999999999997 58999999999999863
No 187
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.85 E-value=9.4e-05 Score=52.31 Aligned_cols=51 Identities=41% Similarity=0.612 Sum_probs=45.9
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
++.++.+++++.++++.|.+.+...+||++++++++|+++.+|+++.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc
Confidence 467899999999999999999999999999889999999999999887653
No 188
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.80 E-value=8.2e-05 Score=52.93 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=44.4
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
++.++.+++++.++...|.+.+.+.+||+++ |+++|+++..|+.+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence 3678999999999999999999999999997 999999999999987653
No 189
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.79 E-value=4.7e-05 Score=55.21 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=48.6
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCc---eeEEEcCCCcEEEEEehhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~---~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
...+++++|.+ ++..+.+++++.++++.|.+++.. ..+|++++|+++|+|+..|+.+
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 34579999988 799999999999999999987753 4468888899999999999873
No 190
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.0004 Score=64.60 Aligned_cols=83 Identities=20% Similarity=0.236 Sum_probs=61.5
Q ss_pred ccCCcccccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC--CcE
Q 025984 51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKL 128 (245)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~--g~~ 128 (245)
.|.+++. -++.|++..-.-. ....-.+.|.++|.. ++..+..++|..|..+.+..+..+.+|+||+. -.+
T Consensus 562 iYDSII~-IKklPYLPDlpps-----~~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiL 633 (931)
T KOG0476|consen 562 IYDSIIR-IKKLPYLPDLPPS-----RSSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMIL 633 (931)
T ss_pred hhhheee-eccCCcCCCCCCc-----ccceeEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCccccee
Confidence 3444333 3446766543211 233456789999999 99999999999999999998879999999864 347
Q ss_pred EEEEehhhhhhhh
Q 025984 129 VGLVSDYDLLALD 141 (245)
Q Consensus 129 ~Giv~~~dl~~~~ 141 (245)
+|.|.++.|...+
T Consensus 634 lGSV~R~~L~~ll 646 (931)
T KOG0476|consen 634 LGSVARRYLTALL 646 (931)
T ss_pred eehhHHHHHHHHH
Confidence 9999999887653
No 191
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.76 E-value=7.9e-05 Score=64.06 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=77.4
Q ss_pred cccccCCCCchhhhhhhhccCC-ccccccccc------ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
+-.+..+.|..++...+....+ .++.+++.. +|..+..+.+. ++ .+.+-.++++-..++.++++.+++.
T Consensus 212 i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~--e~--~~~~k~d~~~~a~epyFVPe~Tpl~ 287 (423)
T COG4536 212 IIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLN--EK--NEFTKEDILRAADEPYFVPEGTPLS 287 (423)
T ss_pred eeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhh--cc--CcccHhHHHHHhcCCeecCCCCcHH
Confidence 4567789999999998876666 899888762 33333323222 11 1134444443333589999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
+.+..|.+++.+...||||-|.+.|+||.+|++.-
T Consensus 288 ~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEE 322 (423)
T COG4536 288 DQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEE 322 (423)
T ss_pred HHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHH
Confidence 99999999999999999999999999999999863
No 192
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.72 E-value=7.8e-05 Score=56.40 Aligned_cols=55 Identities=31% Similarity=0.642 Sum_probs=49.7
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..++.++|.. ++.++++++++.++++.|.+.+...+||+++ |+++|+|+..|++.
T Consensus 88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 4567888987 7999999999999999999999999999987 89999999999873
No 193
>PRK11573 hypothetical protein; Provisional
Probab=97.71 E-value=6.7e-05 Score=67.02 Aligned_cols=106 Identities=14% Similarity=0.050 Sum_probs=76.8
Q ss_pred cccccccCCCCchhhhhhhhccCC-ccccccccc------ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 103 (245)
.++.+++.+.+..++...+.+..+ .+|.+++.. .+..+...... .........+.+++++ +..++++++
T Consensus 197 ~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~-~~~~~~~~~l~~~~r~---~~~Vpe~~~ 272 (413)
T PRK11573 197 NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT-EKKEFTKENMLRAADE---IYFVPEGTP 272 (413)
T ss_pred ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh-ccCcCCHHHHHhhccC---CeEeCCCCc
Confidence 467788889999999999876665 888876642 12222111000 0011111234466665 789999999
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
+.++++.|++++.+-+.|+|+.|...|+||.+|++..
T Consensus 273 l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEe 309 (413)
T PRK11573 273 LSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE 309 (413)
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHH
Confidence 9999999999999999999999999999999999975
No 194
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.66 E-value=0.0001 Score=52.33 Aligned_cols=54 Identities=37% Similarity=0.551 Sum_probs=47.7
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.++.++|.. ++.++..++++.+++..|.+++...+||+|+ |+++|+++..|+..
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 356777877 7888999999999999999999999999985 79999999999874
No 195
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.58 E-value=0.00019 Score=64.59 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=73.9
Q ss_pred ccccccccCCCCchhhhhhhhccC-Ccccccccc------cccccccccccCCCCCCCCcceecccccCCCceeEECCCC
Q 025984 30 ALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRS------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT 102 (245)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~ 102 (245)
..++.+++.+.+..++...+.+.. ++++.+++. -.+..+.......... .......+. ++..+++++
T Consensus 215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~~---~~~~Vpet~ 288 (429)
T COG1253 215 RTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLVR---PPLFVPETL 288 (429)
T ss_pred cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhccc---CCeEecCCC
Confidence 356777888899999999985555 478877743 1222222111110000 112222222 488999999
Q ss_pred CHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 103 ~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
++.++++.|++.+.+-+.|+|+.|...|+||.+|++..
T Consensus 289 ~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEe 326 (429)
T COG1253 289 SLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEE 326 (429)
T ss_pred cHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHH
Confidence 99999999999999999999999999999999999986
No 196
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.45 E-value=0.00024 Score=60.66 Aligned_cols=62 Identities=23% Similarity=0.354 Sum_probs=57.5
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~ 142 (245)
...+.++..+|++ ++.++.+.+++..+.+.|--.++.-+||+|++.+++|+|++.|+++.+.
T Consensus 245 ~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 245 KKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred CCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 3467799999999 8999999999999999999999999999999999999999999998765
No 197
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00034 Score=62.78 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=54.7
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
....++++|.+ +++.+.+++..+++.+.+++++.-.+||||++++++|+||..|+....
T Consensus 194 ~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 194 PDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred cHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence 45588999998 799999999999999999999999999999999999999999998764
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.09 E-value=0.0011 Score=58.20 Aligned_cols=55 Identities=25% Similarity=0.438 Sum_probs=49.4
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
++.+.+.+ ...++++++++.+++..|.++++. +||+|++|+++|+|+..+++.++
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 46677776 788999999999999999999988 99999999999999999998764
No 199
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0095 Score=52.10 Aligned_cols=104 Identities=22% Similarity=0.144 Sum_probs=72.9
Q ss_pred cccccCCCCchhhhhhhhccCC-ccccc----ccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSAL----RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
-.++.+...+.++.+....+.. .++.- .++.+...-..+.++.. .-....+.++|++ ..++.+.+.++.++
T Consensus 118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~~~~~~~~~vmt~--~~~~~~~gi~l~~~ 193 (503)
T KOG2550|consen 118 PIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--EDNSLLVSDVMTK--NPVTGAQGITLKEA 193 (503)
T ss_pred CcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--hcccchhhhhccc--ccccccccccHHHH
Confidence 3455666677777777665554 23221 12222222222222211 2356688999999 66888999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
-+++++++-..+||||++|+++.++++.||.+.
T Consensus 194 neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 194 NEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 999999999999999999999999999999874
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.63 E-value=0.0043 Score=55.28 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=48.8
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~ 142 (245)
++.+.+.+ ...++.+++++.+++..+..+... +||+|++|+++|+|+..+++.++.
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 56666766 688999999999999999987765 999999999999999999998753
No 201
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.86 E-value=0.12 Score=43.10 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=65.9
Q ss_pred eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc------ccCCCCCCCCCCccccccccchhHHH
Q 025984 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS------ISGSGRADNSMFPEVDSTWKTFNEVQ 168 (245)
Q Consensus 95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
++.|+.| +.||+++- +.+.|++ +|+++-+-+..+++.... ..+.+. ..|
T Consensus 189 ivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~----------~~~------- 243 (309)
T COG1125 189 IVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESE----------RGL------- 243 (309)
T ss_pred EEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhcccc----------ccc-------
Confidence 4444444 66666654 3466776 688999999888875311 000000 000
Q ss_pred HHHhhccCCcccccccCCc----eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 169 KLLSKTNGKMVGDLMTPAP----VVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 169 ~~~~~~~~~~v~~~m~~~~----~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.......+.+.+.... -.+.......+++..+...+...+||+|++|+++|.||..+++.+
T Consensus 244 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 244 ---RLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ---cccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 0011223333333221 113333445568888888999999999999999999999999865
No 202
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.029 Score=45.75 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=51.2
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.-+.+.++.+| .+.+++...+.-.++.|+.++.+-+.|+|+-|...|+||.+|++.-
T Consensus 131 ~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq 187 (293)
T COG4535 131 EPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ 187 (293)
T ss_pred ccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHH
Confidence 33577788887 7889999999999999999999999999999999999999999864
No 203
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.047 Score=50.38 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=49.7
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
...-+|++ .++++++++++..+..+++.-+.+++.|++...+.+|++|++|+...
T Consensus 691 Dl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 691 DLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred ccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 45567888 89999999999999999999999999999988888999999999864
No 204
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=94.52 E-value=0.038 Score=50.62 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=92.8
Q ss_pred CCCCCcceecccccCCCceeEECCCCCHH-HHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984 77 APSSGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMF 154 (245)
Q Consensus 77 ~~~~~~~~v~~im~~~~~~~~v~~~~~v~-~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~ 154 (245)
...+....++++|++-+++..+..+..+. +......+.+++.+||.+.+ ...+|.+-...+.......
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~---------- 267 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE---------- 267 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----------
Confidence 44567779999999988888888888776 55666668899999999864 3334443333333321000
Q ss_pred ccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
......++...+......++.++++.+.++.|++...+.+.|.+ ..--+|+++..|+ ++..
T Consensus 268 -----------------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 268 -----------------VPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred -----------------cccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence 01124567777777788899999999999999988887776666 5568899999998 6655
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.42 E-value=0.16 Score=45.09 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=43.0
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
++.+ +.. +..++++++++.+++..+.++++ .++|+|+ |+++|+|+..+++.++
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHH
Confidence 3444 333 57889999999999999887765 4888886 9999999999998763
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.54 E-value=0.47 Score=45.01 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=53.9
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEEhHHHHHHHHHhH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--g~~vGiIt~~dll~~~~~~~ 237 (245)
...++++|.++..++..+++..|..+.+....++.+|+||.. --++|.|.++.|...+..+.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI 650 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence 456899999999999999999999999988879999999853 36999999999998887643
No 207
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=89.26 E-value=0.95 Score=42.11 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=48.9
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.....+++|.. .+.++...++.+.+++++++-+.....|. ++|++.|+|+.+|++.+
T Consensus 637 ~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 637 SRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH 693 (696)
T ss_pred CCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence 44566788877 78999999999999999999998888775 47999999999999875
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.13 E-value=0.78 Score=39.50 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=40.9
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
.+..+..++++.+.+....+.. ..++|+|++|+++|+++...++.++
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHH
Confidence 5788999999999999887665 4689999999999999999998764
No 209
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=88.44 E-value=0.99 Score=37.75 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=43.1
Q ss_pred CCCcceecccccCCC--ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 79 SSGVYTVGDFMTTKE--ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 79 ~~~~~~v~~im~~~~--~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
.+...++.+.|.+.. +--.+.....-.+++..+...+...+||+|++|+++|.|+..++..
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 245 LLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred ccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 345566777766521 1122333445556777777888899999999999999999999875
No 210
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=72.20 E-value=12 Score=26.75 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCcccccccCCceEecCCCC---HHHHHHHHHHcCCCEEEEEcC-CCcE----EEEEEhHHHHHHHHHhHH
Q 025984 176 GKMVGDLMTPAPVVVRETTN---LEDAARLLLETKYRRLPVVDA-DGKL----VGIITRGNVVRAALQIKH 238 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~---l~~~~~~~~~~~~~~l~Vvd~-~g~~----vGiIt~~dll~~~~~~~~ 238 (245)
+..+.+.+..+.+.+..+.+ ..+....+...+...+.+++. +|++ .|.++.++++..+.+...
T Consensus 42 ~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 42 NESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred CHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 34455555544555444432 334444555566777788887 6754 588999999988776543
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=68.72 E-value=16 Score=34.83 Aligned_cols=120 Identities=15% Similarity=0.212 Sum_probs=66.8
Q ss_pred eecccccCCCceeEECCCCC-HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984 84 TVGDFMTTKEELHVVKPTTT-VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~-v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
...+.+.. +-..+....+ +....+.+...+ ..+++.|.+|.++.+....++.......+. ..+ ..|.
T Consensus 42 ~~~~~~~~--~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~-~~G--------~~w~ 109 (638)
T PRK11388 42 TFASIYRR--KKALLTLGQAALEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGF-NDG--------TYCA 109 (638)
T ss_pred HHHHHHHH--hHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCC-ccC--------Cccc
Confidence 34444444 3333444444 455555665555 688899999999999888877653221110 000 1111
Q ss_pred chhHHHHHHhhccCCcccccc-cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEh
Q 025984 163 TFNEVQKLLSKTNGKMVGDLM-TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITR 226 (245)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~~m-~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~ 226 (245)
. +..+..-++... ...|..|.......+.++ ...+...||.|.+|+++|+|+.
T Consensus 110 E--------~~~GTnaig~al~~~~pv~v~g~EH~~~~~~---~~~c~aaPI~d~~G~liGvl~l 163 (638)
T PRK11388 110 E--------GIIGTNALSLAAISGQPVKTMGDQHFKQALH---NWAFCATPVFDSKGRLTGTIAL 163 (638)
T ss_pred h--------hccCcCHHHHHHhcCCceEEecHHHHHHhcc---CceEEeeEEEcCCCCEEEEEEE
Confidence 0 001111222222 345677776665555443 4455678999999999999963
No 212
>smart00594 UAS UAS domain.
Probab=61.16 E-value=18 Score=26.24 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHH---HcCCCEEEEEcCCC---------cEEEEEEhHHHHHHH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLL---ETKYRRLPVVDADG---------KLVGIITRGNVVRAA 233 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~---~~~~~~l~Vvd~~g---------~~vGiIt~~dll~~~ 233 (245)
+..|.+++..+.+.+..+.+-.+..+++. -.+...+.+++.++ ++-|-++.++++..+
T Consensus 52 ~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 52 NEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 44556666666666444544444444444 45667788888765 455667777776654
No 213
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=57.94 E-value=30 Score=23.10 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 209 RRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 209 ~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
..+-||+++|..+|+++.++-++...+
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~~ 39 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAKE 39 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHHH
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHHH
Confidence 567788989999999999998876544
No 214
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=53.85 E-value=20 Score=33.15 Aligned_cols=40 Identities=23% Similarity=0.433 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 194 TNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 194 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
..++.+.+...+.|-..++|+. +|+++|+|..+|+++-=.
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi 452 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGI 452 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchhH
Confidence 3477788888888988999988 799999999999987633
No 215
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=45.87 E-value=24 Score=25.28 Aligned_cols=17 Identities=41% Similarity=0.843 Sum_probs=12.9
Q ss_pred EEEEEcCCCcEEEEEEh
Q 025984 210 RLPVVDADGKLVGIITR 226 (245)
Q Consensus 210 ~l~Vvd~~g~~vGiIt~ 226 (245)
..||.|.+|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 56999889999999875
No 216
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=44.53 E-value=36 Score=22.68 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=19.4
Q ss_pred CceeEEEcCCCcEEEEEehhhhhhh
Q 025984 116 ITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 116 ~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
...+-|+|++|..+|+++..+.+..
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 5678889999999999999998865
No 217
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=44.09 E-value=46 Score=30.91 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh
Q 025984 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (245)
Q Consensus 102 ~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~ 139 (245)
..+..+.+...+.+-.-++|++ +|++.|+|..+|+.+
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcc
Confidence 3467778888888888888887 579999999999986
No 218
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=41.76 E-value=29 Score=24.88 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=14.2
Q ss_pred ceeEEEcCCCcEEEEEehh
Q 025984 117 TGFPVIDDDWKLVGLVSDY 135 (245)
Q Consensus 117 ~~~~Vvd~~g~~~Giv~~~ 135 (245)
-..||.|.+|+++|+|...
T Consensus 92 ~~~PV~d~~g~viG~V~VG 110 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSVG 110 (116)
T ss_dssp EEEEEE-TTS-EEEEEEEE
T ss_pred EEEeeECCCCcEEEEEEEE
Confidence 4689998899999999754
No 219
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=36.81 E-value=1e+02 Score=28.70 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHh-cCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCc
Q 025984 100 PTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM 178 (245)
Q Consensus 100 ~~~~v~~~~~~~~~-~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (245)
.+..+....+.++. ++..++.|.|.+| +-+-+...=. +........
T Consensus 71 ~~~~iq~~~~~i~~~t~a~fIVV~d~~g--IR~~HP~per-------------------------------IGkp~~ggd 117 (537)
T COG3290 71 QEARIQAIAEAIRSITDADFIVVGDMKG--IRLTHPNPER-------------------------------IGKPFQGGD 117 (537)
T ss_pred cchhHHHHHHHHHhhcCceEEEEecCCc--ceecCCChHH-------------------------------hCCCccCCC
Confidence 34667777887874 5777788888765 3333322200 000001111
Q ss_pred ccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 179 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
-..++.-...+....-++..++.- ..||.|++|+.+|+|+.-=++..+.+..
T Consensus 118 e~a~~~G~~yvS~~kGslg~s~R~-------~~PI~d~~g~~IGvVsVG~~l~~i~~~i 169 (537)
T COG3290 118 EEAALAGESYVSTAKGSLGKSLRA-------KVPIFDEDGKQIGVVSVGYLLSEIDDVI 169 (537)
T ss_pred HHHHhCCceeEEEeeccchhhhee-------ecceECCCCCEEEEEEEeeEhhhHHHHH
Confidence 122222233444445566655543 4799999999999998766655554443
No 220
>PHA00673 acetyltransferase domain containing protein
Probab=35.81 E-value=1.6e+02 Score=22.65 Aligned_cols=33 Identities=15% Similarity=-0.030 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEh
Q 025984 194 TNLEDAARLLLETKYRRLPVVDADGKLVGIITR 226 (245)
Q Consensus 194 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~ 226 (245)
.+-.++++.+.+.+-..+.|...+|+++|.+..
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l 72 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACL 72 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEE
Confidence 566777888888888899888768999996544
No 221
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=32.88 E-value=2.3e+02 Score=25.43 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=49.0
Q ss_pred CceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCccccc-ccCCceEecCCC
Q 025984 116 ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDL-MTPAPVVVRETT 194 (245)
Q Consensus 116 ~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-m~~~~~~v~~~~ 194 (245)
++.++|.++ +.|++|-.||+ .+. ...+++. +-+. ...-.|.
T Consensus 306 v~v~~v~n~---VagLlTg~Di~-~l~---------------------------------~~~~~d~~liP~-~~fldd~ 347 (404)
T TIGR03278 306 VNVVPVKKD---IACLITEDDLE-ELD---------------------------------LSEVKETVIIPG-RAFVHDM 347 (404)
T ss_pred EEEEEecCc---ccccchHHHHH-Hhc---------------------------------CCCCCCEEEecC-ccccccc
Confidence 455555543 99999999999 431 2223332 2233 3334477
Q ss_pred CHHHHHHHHHHcCCCEEEEEc-----CCCcEEEEEEhHHHHHHHHHh
Q 025984 195 NLEDAARLLLETKYRRLPVVD-----ADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 195 ~l~~~~~~~~~~~~~~l~Vvd-----~~g~~vGiIt~~dll~~~~~~ 236 (245)
+++++.+.+ +...++|-. -+|+.-|..|++++++.=.+.
T Consensus 348 t~~~~~~~l---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (404)
T TIGR03278 348 VAEEILKRD---GVDRIVVRGPDRLTADGEMSGGMTREEVLEFELEA 391 (404)
T ss_pred cHHHHHHHh---CCcEEEecCCceeeecceecccccHHHHHHHHHHH
Confidence 777777654 655554421 258899999999998764433
No 222
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=32.64 E-value=41 Score=22.05 Aligned_cols=18 Identities=33% Similarity=0.840 Sum_probs=13.0
Q ss_pred EEEEEcCCCcEEEEEEhH
Q 025984 210 RLPVVDADGKLVGIITRG 227 (245)
Q Consensus 210 ~l~Vvd~~g~~vGiIt~~ 227 (245)
..||.+++|+++|++...
T Consensus 18 s~pi~~~~g~~~Gvv~~d 35 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGID 35 (81)
T ss_dssp EEEEEETTTEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEEE
Confidence 347888788999986543
No 223
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=32.17 E-value=35 Score=23.82 Aligned_cols=18 Identities=44% Similarity=0.708 Sum_probs=14.0
Q ss_pred cCCCEEEEEcCCCcEEEE
Q 025984 206 TKYRRLPVVDADGKLVGI 223 (245)
Q Consensus 206 ~~~~~l~Vvd~~g~~vGi 223 (245)
.+.+--||+|.+|+++||
T Consensus 103 ~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 103 PGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp TTTTTSEEEETTSEEEEE
T ss_pred CCcEeHhEECCCCEEEeC
Confidence 344556899999999997
No 224
>PF14044 NETI: NETI protein
Probab=29.72 E-value=71 Score=20.03 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.7
Q ss_pred EecCCCCHHHHHHHHHHcCCCEE
Q 025984 189 VVRETTNLEDAARLLLETKYRRL 211 (245)
Q Consensus 189 ~v~~~~~l~~~~~~~~~~~~~~l 211 (245)
.|.++.++.++++.|.+.|+..+
T Consensus 3 eV~enETI~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYMPV 25 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCCce
Confidence 47889999999999999997544
No 225
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.02 E-value=91 Score=19.60 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=27.7
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhH
Q 025984 191 RETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRG 227 (245)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~ 227 (245)
....++.+.++...+.|++.+.+.|. +.+.|.....
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh-~~~~~~~~~~ 47 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDH-GNLFGAVEFY 47 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeC-CcccCHHHHH
Confidence 55678999999999999999999985 5566654333
No 226
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=26.84 E-value=1.2e+02 Score=22.92 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=19.4
Q ss_pred EcCCCcEEEEEEhHHHHHHHHHh
Q 025984 214 VDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 214 vd~~g~~vGiIt~~dll~~~~~~ 236 (245)
++++|++.|-||..||.+++...
T Consensus 83 ~g~~gklfGsVt~~~I~~~l~~~ 105 (147)
T PRK00137 83 AGEDGKLFGSVTTKDIAEALKKQ 105 (147)
T ss_pred cCCCCeEEeeeCHHHHHHHHHHc
Confidence 35689999999999999998654
No 227
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=25.80 E-value=60 Score=22.52 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCCEEEEEcCCCc----EEEEEEhHHHHHHH
Q 025984 198 DAARLLLETKYRRLPVVDADGK----LVGIITRGNVVRAA 233 (245)
Q Consensus 198 ~~~~~~~~~~~~~l~Vvd~~g~----~vGiIt~~dll~~~ 233 (245)
+..+.+.-.+...+.+.|.+|+ +.|.++.+++.+.+
T Consensus 73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 3445555566667778887775 56777888777653
No 228
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=24.00 E-value=2e+02 Score=22.78 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=37.2
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 191 RETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
.....+-+++..+.+.++..++|.|.+|--.|..+..++...-...
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m 76 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKM 76 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHH
Confidence 3445678889999999999999999889888999999987764333
No 229
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=23.46 E-value=1.1e+02 Score=24.04 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984 115 RITGFPVIDDDWKLVGLVSDYDLLALDS 142 (245)
Q Consensus 115 ~~~~~~Vvd~~g~~~Giv~~~dl~~~~~ 142 (245)
+...+-+++++|.-+|+++..+.+....
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~ 44 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAE 44 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHH
Confidence 5667888999999999999999887533
No 230
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=23.43 E-value=1.5e+02 Score=20.31 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhH
Q 025984 194 TNLEDAARLLLETKYRRLPVVDADGKLVGIITRG 227 (245)
Q Consensus 194 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~ 227 (245)
.+.....+.+. .+...+.|++.+|+++|.+..+
T Consensus 30 ~~~~~~~~~~~-~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 30 YSPEDLEEYLE-EGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp SSHHHHHHHHC-TCCCEEEEEEETTEEEEEEEEE
T ss_pred cCHHHHHHHHH-hcCCEEEEEEECCEEEEEEEEc
Confidence 34444544444 4435666666689999998754
No 231
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=23.36 E-value=81 Score=21.69 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=11.8
Q ss_pred CceeEEEcCCCcEEEEE
Q 025984 116 ITGFPVIDDDWKLVGLV 132 (245)
Q Consensus 116 ~~~~~Vvd~~g~~~Giv 132 (245)
....|+.|++|++.|++
T Consensus 83 ~~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 83 VRYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 35678888889999987
No 232
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=22.89 E-value=2e+02 Score=21.91 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCcEEEEE--------EhHHHHHHHHHhHH
Q 025984 208 YRRLPVVDADGKLVGII--------TRGNVVRAALQIKH 238 (245)
Q Consensus 208 ~~~l~Vvd~~g~~vGiI--------t~~dll~~~~~~~~ 238 (245)
.+...|+|.+|+++... ...++++.+.....
T Consensus 120 ~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~ 158 (173)
T cd03015 120 LRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQF 158 (173)
T ss_pred eeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 45788999999988887 24556766654443
No 233
>PRK03972 ribosomal biogenesis protein; Validated
Probab=22.23 E-value=2e+02 Score=23.30 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=28.9
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEE
Q 025984 187 PVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGI 223 (245)
Q Consensus 187 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGi 223 (245)
...-....++.+..+.-.+.+...++||+++ |.+-|+
T Consensus 29 ~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L 66 (208)
T PRK03972 29 LYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKM 66 (208)
T ss_pred EEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeE
Confidence 4556678899999999999999999999874 444443
No 234
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=20.87 E-value=2e+02 Score=21.90 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=19.3
Q ss_pred EcCCCcEEEEEEhHHHHHHHHHh
Q 025984 214 VDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 214 vd~~g~~vGiIt~~dll~~~~~~ 236 (245)
+.++|++.|-||..||.+++.+.
T Consensus 83 ~ge~gklfGSVt~~~I~~~l~~~ 105 (148)
T TIGR00158 83 VGDEGKLFGSITTKQIADALKAA 105 (148)
T ss_pred eCCCCeEEEeECHHHHHHHHHHc
Confidence 35689999999999999998553
No 235
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.37 E-value=2.8e+02 Score=18.64 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHH
Q 025984 193 TTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 239 (245)
Q Consensus 193 ~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~ 239 (245)
.-++.++++.+.+.|++.+.|+- -.-.-|.=+..|+...+.+....
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvP-l~~~~g~h~~~di~~~~~~~~~~ 89 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVP-LAPVSGDEVFYDIDSEIGLVRKQ 89 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEe-CccccChhhHHHHHHHHHHHHHh
Confidence 45789999999999999998886 34345777888998888776653
No 236
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=20.20 E-value=99 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=17.4
Q ss_pred cCCceeEEEcCCCcEEEEEehh
Q 025984 114 KRITGFPVIDDDWKLVGLVSDY 135 (245)
Q Consensus 114 ~~~~~~~Vvd~~g~~~Giv~~~ 135 (245)
.+-+.=|+.|+.|+++|||--.
T Consensus 105 ~GDSGRpi~DNsGrVVaIVLGG 126 (158)
T PF00944_consen 105 PGDSGRPIFDNSGRVVAIVLGG 126 (158)
T ss_dssp TTSTTEEEESTTSBEEEEEEEE
T ss_pred CCCCCCccCcCCCCEEEEEecC
Confidence 3556689999999999999543
Done!