Query 025984
Match_columns 245
No_of_seqs 201 out of 1709
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sl7_A CBS domain-containing p 99.9 3.5E-24 1.2E-28 167.8 12.1 159 82-240 3-161 (180)
2 4esy_A CBS domain containing m 99.9 4.7E-24 1.6E-28 166.3 8.1 151 80-238 15-165 (170)
3 4gqw_A CBS domain-containing p 99.9 9.2E-23 3.1E-27 155.2 12.2 148 81-242 3-150 (152)
4 3lv9_A Putative transporter; C 99.9 3.5E-22 1.2E-26 152.0 15.0 127 79-236 19-146 (148)
5 3jtf_A Magnesium and cobalt ef 99.9 3.1E-22 1.1E-26 148.9 14.0 124 81-236 3-127 (129)
6 3i8n_A Uncharacterized protein 99.9 9.4E-23 3.2E-27 151.9 11.1 126 80-235 3-129 (130)
7 3nqr_A Magnesium and cobalt ef 99.9 1.6E-22 5.5E-27 150.0 12.0 124 82-235 2-126 (127)
8 3lhh_A CBS domain protein; str 99.9 5.6E-22 1.9E-26 154.9 14.1 128 79-237 38-166 (172)
9 3k6e_A CBS domain protein; str 99.9 1E-22 3.5E-27 156.8 9.7 131 83-238 15-145 (156)
10 3lfr_A Putative metal ION tran 99.9 2.1E-22 7.3E-27 151.2 11.1 127 82-237 2-129 (136)
11 3kpb_A Uncharacterized protein 99.9 6.4E-22 2.2E-26 145.3 12.1 120 83-235 1-120 (122)
12 3hf7_A Uncharacterized CBS-dom 99.9 3.6E-22 1.2E-26 148.9 10.0 126 83-236 2-128 (130)
13 3gby_A Uncharacterized protein 99.9 9.2E-22 3.2E-26 146.0 12.0 125 81-236 3-127 (128)
14 2ef7_A Hypothetical protein ST 99.9 2.2E-21 7.4E-26 144.7 14.0 128 81-239 2-129 (133)
15 3lqn_A CBS domain protein; csg 99.9 9.8E-22 3.4E-26 149.6 10.6 138 79-240 11-148 (150)
16 3fv6_A YQZB protein; CBS domai 99.9 2.2E-21 7.6E-26 149.4 12.7 136 79-244 13-153 (159)
17 3oco_A Hemolysin-like protein 99.9 8.9E-22 3.1E-26 150.7 9.7 128 80-238 17-146 (153)
18 2rih_A Conserved protein with 99.9 8.1E-21 2.8E-25 143.1 14.0 126 82-238 4-131 (141)
19 3kxr_A Magnesium transporter, 99.9 1.2E-20 4.2E-25 151.5 15.5 123 80-237 51-176 (205)
20 2p9m_A Hypothetical protein MJ 99.9 7.1E-21 2.4E-25 142.7 13.1 127 79-235 4-136 (138)
21 3ocm_A Putative membrane prote 99.9 4.9E-21 1.7E-25 149.8 12.6 126 80-237 33-159 (173)
22 3fhm_A Uncharacterized protein 99.9 4.5E-21 1.5E-25 148.6 12.0 136 77-239 18-154 (165)
23 2yzi_A Hypothetical protein PH 99.9 1.6E-20 5.4E-25 140.9 14.4 128 79-237 3-131 (138)
24 2o16_A Acetoin utilization pro 99.9 1.1E-20 3.8E-25 145.7 13.6 138 81-240 3-140 (160)
25 3oi8_A Uncharacterized protein 99.8 4.6E-21 1.6E-25 147.3 10.4 120 80-230 35-155 (156)
26 3ctu_A CBS domain protein; str 99.8 5.9E-21 2E-25 146.3 10.2 135 81-240 13-147 (156)
27 2rc3_A CBS domain; in SITU pro 99.8 2.5E-20 8.4E-25 139.3 12.1 123 84-236 7-132 (135)
28 1pbj_A Hypothetical protein; s 99.8 1.9E-20 6.4E-25 137.9 11.0 123 83-236 1-123 (125)
29 2emq_A Hypothetical conserved 99.8 3.9E-20 1.3E-24 141.7 13.2 136 79-238 7-142 (157)
30 1yav_A Hypothetical protein BS 99.8 1.1E-20 3.7E-25 145.4 9.9 138 79-240 10-147 (159)
31 1o50_A CBS domain-containing p 99.8 4.4E-20 1.5E-24 141.7 13.1 142 79-236 12-154 (157)
32 2nyc_A Nuclear protein SNF4; b 99.8 6.4E-20 2.2E-24 138.2 12.1 128 81-236 6-142 (144)
33 3k2v_A Putative D-arabinose 5- 99.8 3.8E-20 1.3E-24 140.9 10.9 122 82-231 27-148 (149)
34 1y5h_A Hypothetical protein RV 99.8 1.6E-20 5.4E-25 140.0 8.3 126 80-235 5-131 (133)
35 2d4z_A Chloride channel protei 99.8 1.4E-19 4.7E-24 149.4 14.6 154 79-235 9-246 (250)
36 1pvm_A Conserved hypothetical 99.8 7.3E-20 2.5E-24 144.2 12.3 126 82-235 8-133 (184)
37 2j9l_A Chloride channel protei 99.8 8.9E-20 3E-24 143.3 11.3 154 79-238 7-168 (185)
38 1vr9_A CBS domain protein/ACT 99.8 3.5E-19 1.2E-23 143.8 15.0 121 81-236 11-131 (213)
39 2uv4_A 5'-AMP-activated protei 99.8 1.3E-19 4.3E-24 138.4 11.7 127 79-235 19-151 (152)
40 2pfi_A Chloride channel protei 99.8 1.1E-19 3.7E-24 140.0 11.1 134 80-239 10-151 (164)
41 3ddj_A CBS domain-containing p 99.8 2E-19 6.9E-24 151.6 12.9 183 32-240 102-290 (296)
42 2oux_A Magnesium transporter; 99.8 2.8E-19 9.6E-24 150.7 13.4 124 80-238 134-262 (286)
43 4fry_A Putative signal-transdu 99.8 1.7E-19 5.8E-24 138.3 10.9 127 83-237 7-137 (157)
44 2yvy_A MGTE, Mg2+ transporter 99.8 6.4E-19 2.2E-23 147.8 13.7 122 81-237 133-259 (278)
45 3ddj_A CBS domain-containing p 99.8 1.9E-18 6.5E-23 145.7 14.7 174 32-236 29-215 (296)
46 3l2b_A Probable manganase-depe 99.8 9.3E-19 3.2E-23 144.0 11.6 151 82-234 6-243 (245)
47 3t4n_C Nuclear protein SNF4; C 99.8 1.9E-18 6.6E-23 147.3 13.5 176 33-236 124-321 (323)
48 2yzq_A Putative uncharacterize 99.8 2.1E-18 7E-23 144.2 12.6 198 33-235 70-279 (282)
49 3kh5_A Protein MJ1225; AMPK, A 99.8 1.2E-18 4.1E-23 145.3 9.7 181 32-233 93-279 (280)
50 3kh5_A Protein MJ1225; AMPK, A 99.8 9E-18 3.1E-22 139.9 13.5 173 32-235 13-205 (280)
51 2zy9_A Mg2+ transporter MGTE; 99.8 1.3E-17 4.4E-22 149.6 14.7 123 80-237 152-279 (473)
52 2yzq_A Putative uncharacterize 99.7 4.6E-17 1.6E-21 135.9 13.5 167 32-230 10-179 (282)
53 3org_A CMCLC; transporter, tra 99.7 2.4E-18 8.2E-23 159.5 5.8 156 80-236 450-626 (632)
54 2qrd_G Protein C1556.08C; AMPK 99.7 6.3E-17 2.2E-21 138.6 13.6 176 34-237 120-317 (334)
55 3pc3_A CG1753, isoform A; CBS, 99.7 3.2E-17 1.1E-21 149.1 11.2 129 78-237 379-513 (527)
56 3usb_A Inosine-5'-monophosphat 99.7 8.8E-17 3E-21 145.2 11.9 118 84-235 114-234 (511)
57 2v8q_E 5'-AMP-activated protei 99.7 2.3E-16 7.7E-21 135.0 11.9 178 32-237 127-325 (330)
58 2v8q_E 5'-AMP-activated protei 99.7 2.5E-16 8.6E-21 134.7 10.0 144 80-235 32-177 (330)
59 3t4n_C Nuclear protein SNF4; C 99.6 1.6E-15 5.5E-20 129.2 12.7 181 31-237 40-250 (323)
60 1zfj_A Inosine monophosphate d 99.6 2.5E-15 8.6E-20 135.5 13.9 118 84-235 91-211 (491)
61 4fxs_A Inosine-5'-monophosphat 99.6 2.1E-16 7.1E-21 142.3 4.2 117 83-233 89-207 (496)
62 1me8_A Inosine-5'-monophosphat 99.6 4.7E-17 1.6E-21 147.0 -0.7 120 84-236 97-222 (503)
63 2qrd_G Protein C1556.08C; AMPK 99.6 6.8E-15 2.3E-19 125.8 12.3 145 81-235 20-172 (334)
64 1vrd_A Inosine-5'-monophosphat 99.6 1.8E-16 6.1E-21 143.1 -0.1 118 84-235 96-215 (494)
65 4avf_A Inosine-5'-monophosphat 99.6 3E-16 1E-20 141.1 -0.2 117 83-234 88-206 (490)
66 4af0_A Inosine-5'-monophosphat 99.5 3.3E-15 1.1E-19 132.6 0.0 110 89-233 144-256 (556)
67 1jcn_A Inosine monophosphate d 99.5 7.8E-16 2.7E-20 139.5 -4.8 119 84-234 109-232 (514)
68 2cu0_A Inosine-5'-monophosphat 99.4 1.4E-14 4.8E-19 130.4 -0.3 114 84-234 94-207 (486)
69 1vr9_A CBS domain protein/ACT 99.3 1.6E-11 5.5E-16 98.7 9.3 151 30-217 20-173 (213)
70 3ghd_A A cystathionine beta-sy 99.2 4.5E-11 1.5E-15 78.8 7.0 69 95-190 2-70 (70)
71 4esy_A CBS domain containing m 99.0 3.9E-10 1.3E-14 87.1 6.5 60 174-233 15-74 (170)
72 3fio_A A cystathionine beta-sy 99.0 1.8E-09 6.1E-14 70.6 7.0 46 95-141 2-47 (70)
73 3jtf_A Magnesium and cobalt ef 98.9 3.8E-09 1.3E-13 77.6 8.6 101 32-140 16-123 (129)
74 3nqr_A Magnesium and cobalt ef 98.9 4E-09 1.4E-13 77.2 7.9 103 32-140 14-123 (127)
75 3lfr_A Putative metal ION tran 98.9 3E-09 1E-13 78.9 7.3 104 32-140 14-124 (136)
76 3ghd_A A cystathionine beta-sy 98.9 4.7E-09 1.6E-13 69.0 6.6 48 187-235 2-49 (70)
77 3gby_A Uncharacterized protein 98.9 2.1E-09 7.3E-14 78.8 5.4 106 32-141 14-124 (128)
78 3lhh_A CBS domain protein; str 98.9 2.7E-09 9.2E-14 82.5 5.7 104 31-141 52-162 (172)
79 3hf7_A Uncharacterized CBS-dom 98.8 2.8E-09 9.5E-14 78.6 5.3 105 32-140 13-124 (130)
80 3lv9_A Putative transporter; C 98.8 1.3E-08 4.6E-13 76.3 8.3 63 174-236 20-85 (148)
81 3oi8_A Uncharacterized protein 98.8 8E-09 2.7E-13 78.5 6.8 100 32-138 49-155 (156)
82 3i8n_A Uncharacterized protein 98.8 5.6E-09 1.9E-13 76.7 5.2 103 32-140 17-126 (130)
83 3l2b_A Probable manganase-depe 98.8 1.5E-08 5.2E-13 82.7 8.2 60 176-235 6-65 (245)
84 4gqw_A CBS domain-containing p 98.8 8.8E-09 3E-13 77.2 6.2 108 32-141 16-141 (152)
85 3k2v_A Putative D-arabinose 5- 98.8 2.3E-08 7.9E-13 75.2 8.3 60 176-235 27-88 (149)
86 3kpb_A Uncharacterized protein 98.8 9.3E-09 3.2E-13 74.4 5.7 58 178-235 2-59 (122)
87 4fry_A Putative signal-transdu 98.8 9.2E-09 3.1E-13 78.0 5.6 108 31-141 21-133 (157)
88 3k6e_A CBS domain protein; str 98.7 1.9E-08 6.5E-13 76.6 6.9 61 176-236 14-76 (156)
89 3ctu_A CBS domain protein; str 98.7 1.8E-08 6.2E-13 76.2 6.8 63 173-235 11-75 (156)
90 3fio_A A cystathionine beta-sy 98.7 2.6E-08 9E-13 64.9 6.6 48 187-235 2-49 (70)
91 3oco_A Hemolysin-like protein 98.7 4.3E-09 1.5E-13 79.6 3.2 103 32-141 31-141 (153)
92 3kxr_A Magnesium transporter, 98.7 2.9E-08 1E-12 79.1 8.1 105 32-141 63-172 (205)
93 2o16_A Acetoin utilization pro 98.7 2.7E-08 9.2E-13 75.8 7.6 60 176-235 4-63 (160)
94 2yzi_A Hypothetical protein PH 98.7 3.2E-08 1.1E-12 73.1 7.6 57 176-232 6-62 (138)
95 2rc3_A CBS domain; in SITU pro 98.7 1.8E-08 6.3E-13 74.2 6.0 107 32-141 18-129 (135)
96 3sl7_A CBS domain-containing p 98.7 1.1E-08 3.9E-13 79.0 5.1 59 81-141 96-154 (180)
97 2d4z_A Chloride channel protei 98.7 4.3E-08 1.5E-12 80.5 8.7 62 176-237 12-75 (250)
98 2rih_A Conserved protein with 98.7 3.8E-08 1.3E-12 73.2 7.4 60 176-235 4-65 (141)
99 3fv6_A YQZB protein; CBS domai 98.7 6E-08 2.1E-12 73.7 8.6 61 173-234 13-73 (159)
100 2p9m_A Hypothetical protein MJ 98.7 3.6E-08 1.2E-12 72.8 7.2 60 175-234 6-66 (138)
101 1yav_A Hypothetical protein BS 98.7 2.2E-08 7.6E-13 76.0 6.1 60 175-234 12-73 (159)
102 2ef7_A Hypothetical protein ST 98.7 5.3E-08 1.8E-12 71.5 7.8 59 176-235 3-61 (133)
103 1pbj_A Hypothetical protein; s 98.7 3.8E-08 1.3E-12 71.4 6.6 57 178-235 2-58 (125)
104 1y5h_A Hypothetical protein RV 98.7 2.4E-08 8.2E-13 73.3 5.4 106 32-140 17-128 (133)
105 1pvm_A Conserved hypothetical 98.7 3.7E-08 1.3E-12 76.8 6.6 107 32-140 18-130 (184)
106 2uv4_A 5'-AMP-activated protei 98.7 3.5E-08 1.2E-12 74.4 6.2 108 31-140 29-148 (152)
107 3lqn_A CBS domain protein; csg 98.7 2E-08 6.9E-13 75.4 4.8 60 175-234 13-74 (150)
108 2emq_A Hypothetical conserved 98.6 4.5E-08 1.5E-12 74.0 6.4 60 175-234 9-70 (157)
109 2pfi_A Chloride channel protei 98.6 5.9E-08 2E-12 73.7 6.9 61 175-235 11-73 (164)
110 2nyc_A Nuclear protein SNF4; b 98.6 9.5E-08 3.2E-12 70.9 7.6 60 176-235 7-69 (144)
111 3fhm_A Uncharacterized protein 98.6 4.8E-08 1.6E-12 74.8 6.1 63 174-236 21-86 (165)
112 3ocm_A Putative membrane prote 98.6 1.8E-07 6.1E-12 72.4 9.1 63 173-235 32-97 (173)
113 3usb_A Inosine-5'-monophosphat 98.6 3.2E-07 1.1E-11 82.8 12.1 103 32-141 122-232 (511)
114 1me8_A Inosine-5'-monophosphat 98.6 1E-08 3.4E-13 92.5 2.0 104 32-140 106-218 (503)
115 1o50_A CBS domain-containing p 98.5 2E-07 7E-12 70.5 7.4 58 176-234 15-73 (157)
116 2j9l_A Chloride channel protei 98.5 1.8E-07 6.3E-12 72.5 6.6 62 175-236 9-78 (185)
117 2oux_A Magnesium transporter; 98.5 1.6E-07 5.4E-12 78.7 6.5 105 32-141 146-257 (286)
118 2yvy_A MGTE, Mg2+ transporter 98.4 4E-07 1.4E-11 75.7 6.2 101 32-141 144-255 (278)
119 3pc3_A CG1753, isoform A; CBS, 98.4 6.1E-07 2.1E-11 81.4 7.3 61 176-236 383-445 (527)
120 3org_A CMCLC; transporter, tra 98.3 1.2E-06 4E-11 81.2 8.1 54 84-140 569-622 (632)
121 4avf_A Inosine-5'-monophosphat 98.3 7E-07 2.4E-11 80.2 5.2 102 33-140 98-204 (490)
122 2zy9_A Mg2+ transporter MGTE; 98.2 1.8E-06 6.2E-11 77.2 6.2 101 32-141 164-275 (473)
123 4fxs_A Inosine-5'-monophosphat 98.2 4.3E-07 1.5E-11 81.6 1.6 105 31-141 97-207 (496)
124 2cu0_A Inosine-5'-monophosphat 98.1 1.6E-06 5.4E-11 77.9 3.1 100 31-140 101-205 (486)
125 4af0_A Inosine-5'-monophosphat 98.0 8.3E-07 2.8E-11 79.2 0.0 97 35-140 150-255 (556)
126 1jcn_A Inosine monophosphate d 98.0 4.7E-06 1.6E-10 75.3 4.6 109 33-141 118-231 (514)
127 1vrd_A Inosine-5'-monophosphat 98.0 6.6E-06 2.2E-10 74.0 5.4 104 32-141 104-213 (494)
128 1zfj_A Inosine monophosphate d 97.9 2.1E-05 7.1E-10 70.6 7.4 104 32-142 99-210 (491)
129 1tif_A IF3-N, translation init 60.2 21 0.00071 23.1 5.1 19 195-213 30-48 (78)
130 3k2t_A LMO2511 protein; lister 53.3 27 0.00091 21.1 4.4 34 100-134 11-45 (57)
131 3ka5_A Ribosome-associated pro 51.8 33 0.0011 21.3 4.8 36 100-135 11-46 (65)
132 1tif_A IF3-N, translation init 47.5 25 0.00084 22.7 3.8 26 115-140 12-37 (78)
133 1svj_A Potassium-transporting 44.5 10 0.00035 28.0 1.9 34 196-230 121-154 (156)
134 3lyv_A Ribosome-associated fac 43.7 34 0.0012 21.3 3.9 36 100-135 12-47 (66)
135 3by8_A Sensor protein DCUS; hi 37.7 23 0.00079 25.2 2.9 28 210-237 110-137 (142)
136 3fan_A Non-structural protein; 35.3 22 0.00074 27.7 2.5 23 207-229 125-147 (213)
137 2lrn_A Thiol:disulfide interch 34.7 37 0.0013 23.8 3.6 43 198-240 100-143 (152)
138 1p0z_A Sensor kinase CITA; tra 33.1 34 0.0012 23.8 3.1 26 103-128 36-62 (131)
139 3ia1_A THIO-disulfide isomeras 29.3 26 0.0009 24.6 2.0 49 194-242 96-148 (154)
140 2w5e_A Putative serine proteas 28.4 36 0.0012 25.1 2.6 22 205-226 123-144 (163)
141 3drn_A Peroxiredoxin, bacterio 28.1 1.3E+02 0.0043 21.2 5.7 19 208-226 111-129 (161)
142 1svj_A Potassium-transporting 28.1 55 0.0019 23.9 3.6 34 104-138 121-154 (156)
143 2qkp_A Uncharacterized protein 27.4 34 0.0012 24.6 2.4 23 117-139 109-132 (151)
144 3tjo_A Serine protease HTRA1; 26.9 37 0.0013 26.4 2.6 21 207-227 187-207 (231)
145 3lgi_A Protease DEGS; stress-s 26.0 35 0.0012 26.6 2.3 20 207-226 174-193 (237)
146 3raz_A Thioredoxin-related pro 24.1 1.1E+02 0.0038 21.1 4.7 51 188-238 84-140 (151)
147 3sti_A Protease DEGQ; serine p 24.0 44 0.0015 26.4 2.6 20 207-226 185-204 (245)
148 3k6y_A Serine protease, possib 23.0 48 0.0017 25.7 2.6 21 207-227 181-201 (237)
149 2as9_A Serine protease; trypsi 23.0 42 0.0014 25.5 2.2 20 207-226 156-175 (210)
150 2kuc_A Putative disulphide-iso 22.3 71 0.0024 21.5 3.2 45 195-239 74-122 (130)
151 2w7s_A Serine protease SPLA; h 20.6 59 0.002 24.2 2.6 21 207-227 152-172 (200)
No 1
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.91 E-value=3.5e-24 Score=167.84 Aligned_cols=159 Identities=77% Similarity=1.218 Sum_probs=128.6
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.++|+++|++..+++++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||+++....+.......+++...+.|
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW 82 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence 45899999875568999999999999999999999999999999999999999999975433333333445566677889
Q ss_pred cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~ 240 (245)
..|.+++.........++.++|.++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++.......
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~~ 161 (180)
T 3sl7_A 83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRNA 161 (180)
T ss_dssp CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhhhh
Confidence 9998888877777888999999999999999999999999999999999999998999999999999999998876543
No 2
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.90 E-value=4.7e-24 Score=166.32 Aligned_cols=151 Identities=24% Similarity=0.306 Sum_probs=118.2
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
+..++|+++|++ +++++.+++++.+|++.|.+++++++||+|++|+++|+||..|++++........ ......
T Consensus 15 l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~-----~~~~~~ 87 (170)
T 4esy_A 15 IRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYE-----ASEILS 87 (170)
T ss_dssp HHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHH-----HHHHHT
T ss_pred HcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccc-----hhhhhh
Confidence 356799999998 8999999999999999999999999999999999999999999987531100000 000000
Q ss_pred cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~ 238 (245)
..................++.++|+++++++.+++++.+|+++|.+++++++||+| +|+++|+||.+||++++.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~~~~ 165 (170)
T 4esy_A 88 RAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLLEES 165 (170)
T ss_dssp TTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCCC--
T ss_pred hccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHhccC
Confidence 00011122333345567899999999999999999999999999999999999999 6999999999999998866544
No 3
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.89 E-value=9.2e-23 Score=155.20 Aligned_cols=148 Identities=86% Similarity=1.275 Sum_probs=116.7
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
..++|+++|++..+++++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+..+.. ....
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~--------------~~~~ 68 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDS--------------GDST 68 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC------------------C
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhc--------------ccCc
Confidence 35689999987556899999999999999999999999999999899999999999986521 1122
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~ 240 (245)
|..+.............++.++|.++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++.+.....
T Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~~~ 148 (152)
T 4gqw_A 69 WKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSG 148 (152)
T ss_dssp CHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-----
T ss_pred ccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccccc
Confidence 33333333333334567899999998999999999999999999999999999998899999999999999998876654
Q ss_pred hh
Q 025984 241 EM 242 (245)
Q Consensus 241 ~~ 242 (245)
.+
T Consensus 149 ~~ 150 (152)
T 4gqw_A 149 DR 150 (152)
T ss_dssp --
T ss_pred cC
Confidence 43
No 4
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.89 E-value=3.5e-22 Score=151.99 Aligned_cols=127 Identities=17% Similarity=0.288 Sum_probs=114.2
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
.+...+|+++|++..++.++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|+..+..
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~--------------- 83 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI--------------- 83 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH---------------
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh---------------
Confidence 45678999999976679999999999999999999999999999987 89999999999987531
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
.....++.++| ++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++...
T Consensus 84 ---------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 84 ---------------NENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp ---------------HHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred ---------------cCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence 11267899999 7799999999999999999999999999999889999999999999998753
No 5
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.89 E-value=3.1e-22 Score=148.90 Aligned_cols=124 Identities=22% Similarity=0.361 Sum_probs=109.4
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+..
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~----------------- 65 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML----------------- 65 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence 456899999954478999999999999999999999999999985 89999999999987531
Q ss_pred cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
....++.++|.+ +.++.+++++.+++++|.+++.+.+||+|++|+++|+||.+|+++++...
T Consensus 66 --------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 66 --------------EPALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp --------------CTTSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred --------------cCCcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence 125678999976 88999999999999999999999999999889999999999999998753
No 6
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.89 E-value=9.4e-23 Score=151.88 Aligned_cols=126 Identities=20% Similarity=0.292 Sum_probs=108.6
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
+...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+...
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~--------------- 67 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS--------------- 67 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT---------------
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc---------------
Confidence 4678999999974467799999999999999999999999999987 899999999999976321
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.....++.++|. ++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++..
T Consensus 68 --------------~~~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 68 --------------GSGQKQLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp --------------TTTTSBHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred --------------CCCcCCHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence 112578899995 48899999999999999999999999999988999999999999999864
No 7
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.89 E-value=1.6e-22 Score=150.01 Aligned_cols=124 Identities=23% Similarity=0.402 Sum_probs=108.0
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
+.+|+++|++..++.++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|+.++...
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~----------------- 64 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS----------------- 64 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence 46899999973359999999999999999999999999999987 899999999999976321
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.....++.++|.+ +.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++..
T Consensus 65 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 65 ------------DAEAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp ------------TCCCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred ------------cCCCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 1135788999966 7899999999999999999999999999989999999999999998753
No 8
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.88 E-value=5.6e-22 Score=154.88 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=111.2
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
.+...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+..
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~--------------- 102 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI--------------- 102 (172)
T ss_dssp -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH---------------
T ss_pred ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh---------------
Confidence 56778999999954378999999999999999999999999999987 89999999999997631
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.....++.++| ++++++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++++....
T Consensus 103 ---------------~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~ 166 (172)
T 3lhh_A 103 ---------------AGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF 166 (172)
T ss_dssp ---------------TTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTC
T ss_pred ---------------hcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCC
Confidence 11257899999 88999999999999999999999999999998899999999999999988643
No 9
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.88 E-value=1e-22 Score=156.84 Aligned_cols=131 Identities=25% Similarity=0.341 Sum_probs=111.7
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
.+++++|+|+.+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++.+......
T Consensus 15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~---------------- 78 (156)
T 3k6e_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL---------------- 78 (156)
T ss_dssp TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC----------------
T ss_pred ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc----------------
Confidence 3788999998899999999999999999999999999999998999999999999875321110
Q ss_pred chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238 (245)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~ 238 (245)
........++.++|.+++.++.+++++.+++++|.+.+ .+||||++|+++|+||.+|+++++....+
T Consensus 79 -------~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~~ 145 (156)
T 3k6e_A 79 -------SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLH 145 (156)
T ss_dssp -------CHHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHSC
T ss_pred -------ccccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHhc
Confidence 00122467899999999999999999999999998775 59999999999999999999999976543
No 10
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.88 E-value=2.1e-22 Score=151.21 Aligned_cols=127 Identities=23% Similarity=0.318 Sum_probs=108.8
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
..+|+++|++..++.++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+....
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~---------------- 65 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA---------------- 65 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS----------------
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc----------------
Confidence 46899999954478999999999999999999999999999987 8999999999999763210
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.....++.++|.+ ++++.+++++.+++++|.+++.+++||+|++|+++|+||.+|+++++....
T Consensus 66 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~ 129 (136)
T 3lfr_A 66 ------------DGDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDI 129 (136)
T ss_dssp ------------SGGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC----
T ss_pred ------------cCCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence 1135689999977 899999999999999999999999999998999999999999999887644
No 11
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.87 E-value=6.4e-22 Score=145.30 Aligned_cols=120 Identities=24% Similarity=0.403 Sum_probs=109.2
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
++|+++|.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+..+..
T Consensus 1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~-------------------- 58 (122)
T 3kpb_A 1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA-------------------- 58 (122)
T ss_dssp CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH--------------------
T ss_pred CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH--------------------
Confidence 368899998 8999999999999999999999999999999999999999999987531
Q ss_pred chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
....++.++|.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++.+
T Consensus 59 -----------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 59 -----------QNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp -----------TTCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred -----------hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 12458999999999999999999999999999999999999988999999999999998765
No 12
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.87 E-value=3.6e-22 Score=148.89 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=107.7
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC-CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~-~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
++|+++|++..+++++++++++.++++.|.+++++.+||+++ +|+++|+|+.+|++++.....
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~---------------- 65 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK---------------- 65 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSS----------------
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccC----------------
Confidence 578999986447899999999999999999999999999975 589999999999997642100
Q ss_pred cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
.....++.++| ++++++.+++++.+++++|.+++.+.+||+|++|+++|+||.+|+++++...
T Consensus 66 -----------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 66 -----------EFTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD 128 (130)
T ss_dssp -----------CCCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred -----------ccchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence 00124678888 5688999999999999999999999999999889999999999999998753
No 13
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.87 E-value=9.2e-22 Score=145.99 Aligned_cols=125 Identities=19% Similarity=0.204 Sum_probs=111.5
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
..++++++|.+ +++++++++++.++.+.|.+++++.+||+|+ |+++|+|+.+|+.++.....
T Consensus 3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~--------------- 64 (128)
T 3gby_A 3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWP--------------- 64 (128)
T ss_dssp TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSC---------------
T ss_pred cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCC---------------
Confidence 46799999998 8999999999999999999999999999998 99999999999997532100
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
....++.++|.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++.+.
T Consensus 65 -------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 65 -------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp -------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred -------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence 013679999999899999999999999999999999999999899999999999999998753
No 14
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.87 E-value=2.2e-21 Score=144.67 Aligned_cols=128 Identities=26% Similarity=0.407 Sum_probs=112.8
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
...+|+++|.+ ++.++++++++.++.+.|.+++++.+||+| +|+++|+|+..|+..+....
T Consensus 2 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~---------------- 62 (133)
T 2ef7_A 2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKG---------------- 62 (133)
T ss_dssp CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT----------------
T ss_pred CcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcC----------------
Confidence 46799999998 799999999999999999999999999999 88999999999998753210
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHH
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHA 239 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~ 239 (245)
.....++.++|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||.+|+++++.+....
T Consensus 63 ------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~~ 129 (133)
T 2ef7_A 63 ------------KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFET 129 (133)
T ss_dssp ------------CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC--
T ss_pred ------------CCcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHHH
Confidence 0125789999988899999999999999999999999999999889999999999999998876554
No 15
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.86 E-value=9.8e-22 Score=149.65 Aligned_cols=138 Identities=21% Similarity=0.288 Sum_probs=114.8
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
.+..++|+++|++..+++++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+..+...... . .
T Consensus 11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~------~-~--- 80 (150)
T 3lqn_A 11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLER------I-E--- 80 (150)
T ss_dssp HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSS------B-C---
T ss_pred hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcc------c-c---
Confidence 34677999999963369999999999999999999999999999999999999999999976421100 0 0
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~ 238 (245)
.......++.++|.+++.++.+++++.+++++|.+.+. +||+|++|+++|+||.+|+++++.+...
T Consensus 81 ------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 81 ------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp ------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred ------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhH
Confidence 01123678999999999999999999999999999986 9999988999999999999999988765
Q ss_pred Hh
Q 025984 239 AT 240 (245)
Q Consensus 239 ~~ 240 (245)
..
T Consensus 147 ~~ 148 (150)
T 3lqn_A 147 QH 148 (150)
T ss_dssp --
T ss_pred hh
Confidence 44
No 16
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.86 E-value=2.2e-21 Score=149.39 Aligned_cols=136 Identities=23% Similarity=0.295 Sum_probs=117.1
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
.+..++|+++|++ . +++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+..+.....
T Consensus 13 ~l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------- 76 (159)
T 3fv6_A 13 KLKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ------------- 76 (159)
T ss_dssp HHTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS-------------
T ss_pred HHhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC-------------
Confidence 3467899999987 4 59999999999999999999999999998899999999999997531100
Q ss_pred ccccchhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC---cEEEEEEhHHHHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADG---KLVGIITRGNVVRAA 233 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g---~~vGiIt~~dll~~~ 233 (245)
.....++.++|.+ ++.++.+++++.+++++|.+.+.+++||+|++| +++|+||.+||++++
T Consensus 77 --------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l 142 (159)
T 3fv6_A 77 --------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142 (159)
T ss_dssp --------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHH
T ss_pred --------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHH
Confidence 1135789999987 889999999999999999999999999999877 999999999999999
Q ss_pred HHhHHHhhhcC
Q 025984 234 LQIKHATEMGA 244 (245)
Q Consensus 234 ~~~~~~~~~~~ 244 (245)
.+.......+.
T Consensus 143 ~~~~~~~~~~~ 153 (159)
T 3fv6_A 143 VSLSENEILLQ 153 (159)
T ss_dssp HHHHTTCCC--
T ss_pred HHHhhcchhhh
Confidence 98877655443
No 17
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.86 E-value=8.9e-22 Score=150.68 Aligned_cols=128 Identities=23% Similarity=0.330 Sum_probs=111.7
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEE-cC-CCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vv-d~-~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
+...+|+++|+++.++.++++++++.+|++.|.+++++.+||+ |+ +|+++|+|+.+|++.+..
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~--------------- 81 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR--------------- 81 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH---------------
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh---------------
Confidence 3567999999864478999999999999999999999999999 65 489999999999997531
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.....++.++| ++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++....
T Consensus 82 ---------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~ 145 (153)
T 3oco_A 82 ---------------IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNL 145 (153)
T ss_dssp ---------------HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC--
T ss_pred ---------------cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccC
Confidence 11267899999 78999999999999999999999999999998899999999999999998654
Q ss_pred H
Q 025984 238 H 238 (245)
Q Consensus 238 ~ 238 (245)
.
T Consensus 146 ~ 146 (153)
T 3oco_A 146 R 146 (153)
T ss_dssp -
T ss_pred C
Confidence 3
No 18
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.86 E-value=8.1e-21 Score=143.14 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=111.1
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCC--cEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g--~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
.++|+++|.+ ++.++++++++.++++.|.+++++.+||+|++| +++|+|+.+|+..+....
T Consensus 4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~--------------- 66 (141)
T 2rih_A 4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR--------------- 66 (141)
T ss_dssp -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT---------------
T ss_pred ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC---------------
Confidence 4689999998 899999999999999999999999999999888 999999999998753210
Q ss_pred cccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~ 238 (245)
.....++.++|.++++++.++ ++.+++++|.+.+.+++||+|++|+++|+||.+||++++.....
T Consensus 67 -------------~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~ 131 (141)
T 2rih_A 67 -------------LDLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE 131 (141)
T ss_dssp -------------CCTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHHHH
T ss_pred -------------CCCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHHHHH
Confidence 012578999999999999999 99999999999999999999988999999999999988776543
No 19
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.85 E-value=1.2e-20 Score=151.52 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=112.7
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhc---CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~---~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~ 156 (245)
+...+|+++|++ +++++++++++.++++.|.+. +++.+||+|++|+++|+|+.+||+...
T Consensus 51 ~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~--------------- 113 (205)
T 3kxr_A 51 YSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE--------------- 113 (205)
T ss_dssp SCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC---------------
T ss_pred CCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC---------------
Confidence 356699999999 899999999999999999987 789999999999999999999998531
Q ss_pred ccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
...++.++|.++++++.+++++.+++++|.+++++.+||||++|+++|+||..|+++.+.+.
T Consensus 114 ------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 114 ------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH 175 (205)
T ss_dssp ------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred ------------------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 25789999999899999999999999999999999999999999999999999999998765
Q ss_pred H
Q 025984 237 K 237 (245)
Q Consensus 237 ~ 237 (245)
.
T Consensus 176 ~ 176 (205)
T 3kxr_A 176 Y 176 (205)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.85 E-value=7.1e-21 Score=142.66 Aligned_cols=127 Identities=31% Similarity=0.484 Sum_probs=111.5
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhh-hhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl-~~~~~~~~~~~~~~~~~~~~ 157 (245)
.+...+++++|++ ++.++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+ ..+....
T Consensus 4 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------- 68 (138)
T 2p9m_A 4 TLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK------------- 68 (138)
T ss_dssp -CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC-------------
T ss_pred ccccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc-------------
Confidence 4567899999988 79999999999999999999999999999988999999999999 7653100
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcC-----CCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETK-----YRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~-----~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.....++.++|.+++.++.+++++.++++.|.+.+ .+++||+|++|+++|+||.+|++++
T Consensus 69 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~ 133 (138)
T 2p9m_A 69 ---------------YTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRT 133 (138)
T ss_dssp ---------------CCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHH
T ss_pred ---------------ccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHH
Confidence 11357899999988999999999999999999999 9999999988999999999999998
Q ss_pred HHH
Q 025984 233 ALQ 235 (245)
Q Consensus 233 ~~~ 235 (245)
+.+
T Consensus 134 ~~~ 136 (138)
T 2p9m_A 134 ISK 136 (138)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 21
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.85 E-value=4.9e-21 Score=149.84 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=110.1
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
+...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+||+.+..
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~---------------- 96 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI---------------- 96 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh----------------
Confidence 4677999999864478999999999999999999999999999986 89999999999997531
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.....++. ++ ++++++.+++++.+++++|.+.+.+.+||+|++|+++|+||.+|+++++....
T Consensus 97 --------------~~~~~~v~-~~-~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i 159 (173)
T 3ocm_A 97 --------------TEGRVRRN-RL-RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF 159 (173)
T ss_dssp --------------HHSSCCGG-GS-BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred --------------cCCcchhH-hc-CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence 11245677 44 66899999999999999999999999999998999999999999999988543
No 22
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=4.5e-21 Score=148.58 Aligned_cols=136 Identities=24% Similarity=0.331 Sum_probs=116.7
Q ss_pred CCCCCcceecccccCC-CceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCc
Q 025984 77 APSSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (245)
Q Consensus 77 ~~~~~~~~v~~im~~~-~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~ 155 (245)
...+..++|+++|+++ .++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+.++....
T Consensus 18 ~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------- 86 (165)
T 3fhm_A 18 YFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ----------- 86 (165)
T ss_dssp CCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH-----------
T ss_pred hHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc-----------
Confidence 4567889999999952 2589999999999999999999999999999999999999999998753210
Q ss_pred cccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.......++.++|.++++++.+++++.+++++|.+.+.+++||+|+ |+++|+||..||++++.+
T Consensus 87 ---------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 87 ---------------GAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG 150 (165)
T ss_dssp ---------------GGGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred ---------------CCccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 0022468899999999999999999999999999999999999997 999999999999999876
Q ss_pred hHHH
Q 025984 236 IKHA 239 (245)
Q Consensus 236 ~~~~ 239 (245)
....
T Consensus 151 ~~~~ 154 (165)
T 3fhm_A 151 EIEA 154 (165)
T ss_dssp C---
T ss_pred HHHH
Confidence 5543
No 23
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.85 E-value=1.6e-20 Score=140.85 Aligned_cols=128 Identities=26% Similarity=0.398 Sum_probs=112.6
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhh-hhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~-~~~~~~~~~~~~~~~~~~ 157 (245)
.+...+|+++|++ +++++++++++.++.+.|.+++++.+||+|++|+++|+|+..|+.+ +.. .+
T Consensus 3 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-~~------------ 67 (138)
T 2yzi_A 3 MDMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV-PG------------ 67 (138)
T ss_dssp CCTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT-TC------------
T ss_pred chhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh-cC------------
Confidence 3567899999998 8999999999999999999999999999998899999999999973 321 00
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.....++.++|.+++.++.+++++.+++++|.+.+.+++ |+|++|+++|+||.+|+++++....
T Consensus 68 ---------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~ 131 (138)
T 2yzi_A 68 ---------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRL 131 (138)
T ss_dssp ---------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred ---------------CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHH
Confidence 012578999999999999999999999999999999999 9998899999999999999987644
No 24
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.85 E-value=1.1e-20 Score=145.67 Aligned_cols=138 Identities=28% Similarity=0.324 Sum_probs=113.9
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
..++|+++|++ +++++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||..+......
T Consensus 3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~-------------- 66 (160)
T 2o16_A 3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ-------------- 66 (160)
T ss_dssp CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC--------------
T ss_pred CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhc--------------
Confidence 35689999998 79999999999999999999999999999988999999999999875321000
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~ 240 (245)
.+ ..........++.++|.++++++.+++++.+++++|.+.+.+.+||+|+ |+++|+||..||++++.+.....
T Consensus 67 --~~---~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~~~~ 140 (160)
T 2o16_A 67 --RS---AQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLELQ 140 (160)
T ss_dssp --------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHHHH
T ss_pred --cc---ccccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHhccc
Confidence 00 0000112367899999999999999999999999999999999999997 99999999999999988755443
No 25
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.85 E-value=4.6e-21 Score=147.28 Aligned_cols=120 Identities=22% Similarity=0.347 Sum_probs=107.0
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
+...+|+++|++..+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+...
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~--------------- 99 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN--------------- 99 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC---------------
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc---------------
Confidence 4677999999875568999999999999999999999999999987 499999999999975310
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll 230 (245)
....++.++|.+ ++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|++
T Consensus 100 ---------------~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 100 ---------------PEQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp ---------------GGGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred ---------------CCcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 025688999976 88999999999999999999999999999899999999999986
No 26
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.84 E-value=5.9e-21 Score=146.35 Aligned_cols=135 Identities=24% Similarity=0.318 Sum_probs=112.7
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
...+++++|++..+++++++++++.++.+.|.+++++.+||+|++|+++|+|+.+|+..+......
T Consensus 13 ~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~-------------- 78 (156)
T 3ctu_A 13 LLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL-------------- 78 (156)
T ss_dssp HHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccc--------------
Confidence 445889999965589999999999999999999999999999999999999999999876321000
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~ 240 (245)
........++.++|.+++.++.+++++.+++++|.+.+ ++||+|++|+++|+||.+|+++++.+.....
T Consensus 79 ---------~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l~~~~~~~ 147 (156)
T 3ctu_A 79 ---------SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHDF 147 (156)
T ss_dssp ---------CHHHHTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHHHHHSCC-
T ss_pred ---------cccccccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHHHHHHHhh
Confidence 00112367899999998999999999999999999886 7999998899999999999999998766543
No 27
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.84 E-value=2.5e-20 Score=139.35 Aligned_cols=123 Identities=27% Similarity=0.457 Sum_probs=107.9
Q ss_pred eeccccc---CCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 84 TVGDFMT---TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 84 ~v~~im~---~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
+|+++|+ + +++++++++++.++++.|.+++++.+||+| +|+++|+|+.+|+.+.....+.
T Consensus 7 ~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~-------------- 69 (135)
T 2rc3_A 7 TVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK-------------- 69 (135)
T ss_dssp BHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS--------------
T ss_pred eHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC--------------
Confidence 8999998 6 799999999999999999999999999999 7899999999999853211110
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
.....++.++|.+++.++.+++++.+++++|.+.+.+++||+| +|+++|+||.+|+++++.+.
T Consensus 70 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 70 ------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp ------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred ------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence 1135789999999999999999999999999999999999999 79999999999999998754
No 28
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.84 E-value=1.9e-20 Score=137.90 Aligned_cols=123 Identities=21% Similarity=0.339 Sum_probs=107.2
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
++|+++|.+ ++.++++++++.++.+.|.+++.+.+||+| +|+++|+|+..|+.++....
T Consensus 1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~------------------ 59 (125)
T 1pbj_A 1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEG------------------ 59 (125)
T ss_dssp -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHT------------------
T ss_pred CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcC------------------
Confidence 368899998 899999999999999999999999999999 89999999999998653110
Q ss_pred chhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
......++.++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||.+|+++++.+.
T Consensus 60 ---------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 60 ---------DDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp ---------CCTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC--
T ss_pred ---------CcccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence 011357899999988999999999999999999999999999997 9999999999999987643
No 29
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.84 E-value=3.9e-20 Score=141.68 Aligned_cols=136 Identities=24% Similarity=0.322 Sum_probs=112.6
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
.+...+|+++|.+..+++++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+..+.....
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~------------- 73 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLE------------- 73 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSS-------------
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhccc-------------
Confidence 4567899999985336889999999999999999999999999998899999999999987632100
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~ 238 (245)
.|. .......++.++|.+++.++.+++++.+++++|.+.+. +||+|++|+++|+||.+|+++++.....
T Consensus 74 -~~~--------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~ 142 (157)
T 2emq_A 74 -RIE--------FERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH 142 (157)
T ss_dssp -SBC--------GGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred -ccc--------hHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence 000 00123678999999999999999999999999999987 9999988999999999999999887543
No 30
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.83 E-value=1.1e-20 Score=145.38 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=113.6
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
.+...+|+++|.+..++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+..+...... + .
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~------~-~--- 79 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER------I-E--- 79 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS------B-C---
T ss_pred HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcc------c-c---
Confidence 45678999999864468999999999999999999999999999988999999999999876421100 0 0
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKH 238 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~ 238 (245)
.......++.++|.+++.++.+++++.+++++|.+.+. +||+|++|+++|+||.+|+++++.+...
T Consensus 80 ------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~ 145 (159)
T 1yav_A 80 ------------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIR 145 (159)
T ss_dssp ------------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred ------------hhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHH
Confidence 00123678999999999999999999999999998876 9999988999999999999999887665
Q ss_pred Hh
Q 025984 239 AT 240 (245)
Q Consensus 239 ~~ 240 (245)
..
T Consensus 146 ~~ 147 (159)
T 1yav_A 146 SL 147 (159)
T ss_dssp --
T ss_pred hh
Confidence 43
No 31
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.83 E-value=4.4e-20 Score=141.72 Aligned_cols=142 Identities=25% Similarity=0.396 Sum_probs=113.3
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCce-eEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~-~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
.....+|+++|++ +++++++++++.+|++.|.+++++. +||+|++ +++|+|+..|++.+..... ......
T Consensus 12 ~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~-----~~~~~~- 82 (157)
T 1o50_A 12 HMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHF-----FGFIPK- 82 (157)
T ss_dssp TCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHH-----HCCCC--
T ss_pred hhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhH-----Hhhhcc-
Confidence 4577899999998 8999999999999999999999999 9999987 9999999999987532000 000000
Q ss_pred cccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
+. .+..........++.++|.+ ++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++.+.
T Consensus 83 ---~~---~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 83 ---EE---LIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp ------------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred ---HH---HHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence 00 00000011235789999999 99999999999999999999999999999889999999999999998764
No 32
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.83 E-value=6.4e-20 Score=138.22 Aligned_cols=128 Identities=22% Similarity=0.344 Sum_probs=107.5
Q ss_pred Ccceecc---cccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 81 GVYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 81 ~~~~v~~---im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
.+.++++ +|.+ +++++++++++.++++.|.+++++.+||+|++|+++|+|+..|+..+.....
T Consensus 6 ~~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------ 71 (144)
T 2nyc_A 6 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI------------ 71 (144)
T ss_dssp GGSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------------
T ss_pred hhcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc------------
Confidence 3457777 7876 7999999999999999999999999999998899999999999987532100
Q ss_pred cccccchhHHHHHHhhccCCcccccccC------CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
......++.++|.+ ++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++
T Consensus 72 --------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~ 137 (144)
T 2nyc_A 72 --------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILK 137 (144)
T ss_dssp -----------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred --------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHH
Confidence 00125678888865 5789999999999999999999999999998899999999999999
Q ss_pred HHHHh
Q 025984 232 AALQI 236 (245)
Q Consensus 232 ~~~~~ 236 (245)
++.+.
T Consensus 138 ~l~~~ 142 (144)
T 2nyc_A 138 YILLG 142 (144)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98753
No 33
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.82 E-value=3.8e-20 Score=140.87 Aligned_cols=122 Identities=25% Similarity=0.364 Sum_probs=107.4
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.++|+++|++..+++++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+.++.....
T Consensus 27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~---------------- 90 (149)
T 3k2v_A 27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV---------------- 90 (149)
T ss_dssp TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS----------------
T ss_pred ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC----------------
Confidence 3599999987556899999999999999999999999999998999999999999997642100
Q ss_pred cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
.....++.++|.+++.++.+++++.+++++|.+.+.+++||+|++ +++|+||.+||++
T Consensus 91 -----------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 91 -----------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp -----------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred -----------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 013578999999989999999999999999999999999999965 9999999999975
No 34
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.82 E-value=1.6e-20 Score=139.96 Aligned_cols=126 Identities=25% Similarity=0.404 Sum_probs=107.7
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh-hhhcccCCCCCCCCCCcccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~-~~~~~~~~~~~~~~~~~~~~ 158 (245)
+...+++++|.+ ++.++++++++.++.+.|.+++++.+||+|++|+++|+|+..|+. ++... +.
T Consensus 5 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-~~------------ 69 (133)
T 1y5h_A 5 FTMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA-GL------------ 69 (133)
T ss_dssp ---CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-TC------------
T ss_pred hhhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-CC------------
Confidence 345689999998 799999999999999999999999999998889999999999998 33210 00
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.....++.++|.++++++.+++++.+++++|.+.+.+++||+|+ |+++|+||.+|+++++.+
T Consensus 70 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 70 --------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp --------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred --------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 01257899999988999999999999999999999999999997 999999999999987643
No 35
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.82 E-value=1.4e-19 Score=149.36 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=113.1
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC--CcEEEEEehhhhhhhhccc--CCCCCC----
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDSIS--GSGRAD---- 150 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~--g~~~Giv~~~dl~~~~~~~--~~~~~~---- 150 (245)
....++|+|+|++ +++++.+++++.++.++|.+++++.+||||++ |+++|+|+..||+.++... ......
T Consensus 9 ~~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~ 86 (250)
T 2d4z_A 9 NKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA 86 (250)
T ss_dssp CCSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred ccCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence 4567899999998 89999999999999999999999999999974 6899999999998764311 000000
Q ss_pred -------------------CC---CCcccc---------------ccc--------------------------------
Q 025984 151 -------------------NS---MFPEVD---------------STW-------------------------------- 161 (245)
Q Consensus 151 -------------------~~---~~~~~~---------------~~~-------------------------------- 161 (245)
+. +..... ..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (250)
T 2d4z_A 87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR 166 (250)
T ss_dssp CBCCC---------------------------------------------------------------------------
T ss_pred cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence 00 000000 000
Q ss_pred ----cchhHHHHHHhhccCCcc--c-ccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 162 ----KTFNEVQKLLSKTNGKMV--G-DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 162 ----~~~~~~~~~~~~~~~~~v--~-~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
-...+...+.......++ . .+|++.|++|.+++++.+++.+|.+.|++++||++ .|+++||||++||++++.
T Consensus 167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence 000111122222244555 3 47999999999999999999999999999999998 699999999999999987
Q ss_pred H
Q 025984 235 Q 235 (245)
Q Consensus 235 ~ 235 (245)
.
T Consensus 246 ~ 246 (250)
T 2d4z_A 246 G 246 (250)
T ss_dssp C
T ss_pred H
Confidence 4
No 36
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.82 E-value=7.3e-20 Score=144.25 Aligned_cols=126 Identities=27% Similarity=0.337 Sum_probs=111.3
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.++|+++|++ +++++++++++.+|+++|.+++++.+||+|++|+++|+|+.+|++.+.....
T Consensus 8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~---------------- 69 (184)
T 1pvm_A 8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN---------------- 69 (184)
T ss_dssp CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGC----------------
T ss_pred ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc----------------
Confidence 4799999998 8999999999999999999999999999998899999999999987532100
Q ss_pred cchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
......++.++|.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++..
T Consensus 70 ----------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 70 ----------KKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp ----------CCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred ----------cCcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 0113568999999889999999999999999999999999999988999999999999987765
No 37
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.81 E-value=8.9e-20 Score=143.33 Aligned_cols=154 Identities=22% Similarity=0.331 Sum_probs=114.1
Q ss_pred CCCcceecccccCCCc--eeEE--CCCCCHHHHHHHHHhcCCceeEEE--cCCCcEEEEEehhhhhhhhcccCCCCCCCC
Q 025984 79 SSGVYTVGDFMTTKEE--LHVV--KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGRADNS 152 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~--~~~v--~~~~~v~~~~~~~~~~~~~~~~Vv--d~~g~~~Giv~~~dl~~~~~~~~~~~~~~~ 152 (245)
.+...+|+++|++..+ +.++ .+++++.+|++.|.+++++.+||+ |++|+++|+|+..|++.+........ ..
T Consensus 7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~--~~ 84 (185)
T 2j9l_A 7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQ--DG 84 (185)
T ss_dssp --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSC--SC
T ss_pred hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccC--CC
Confidence 4567899999998311 7788 999999999999999999999999 78899999999999987642110000 00
Q ss_pred CCccccccccchhHH--HHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984 153 MFPEVDSTWKTFNEV--QKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230 (245)
Q Consensus 153 ~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll 230 (245)
+... .+..+... ..........++.++|.++++++.+++++.+++++|.+.+.+++||+| +|+++|+||.+||+
T Consensus 85 ~~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll 160 (185)
T 2j9l_A 85 VVST---SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVL 160 (185)
T ss_dssp CCTT---CEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred cccc---ceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHH
Confidence 0000 00000000 000001235689999988899999999999999999999999999999 89999999999999
Q ss_pred HHHHHhHH
Q 025984 231 RAALQIKH 238 (245)
Q Consensus 231 ~~~~~~~~ 238 (245)
+++.+...
T Consensus 161 ~~l~~~~~ 168 (185)
T 2j9l_A 161 KHIAQMAN 168 (185)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhc
Confidence 99887654
No 38
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.81 E-value=3.5e-19 Score=143.80 Aligned_cols=121 Identities=26% Similarity=0.347 Sum_probs=109.9
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
...+++++|.. +++++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|+..+.
T Consensus 11 ~~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~------------------- 69 (213)
T 1vr9_A 11 HHMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD------------------- 69 (213)
T ss_dssp --CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC-------------------
T ss_pred cccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc-------------------
Confidence 34588999998 899999999999999999999999999999889999999999998642
Q ss_pred ccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
...++.++|.++++++.+++++.+++++|.+.+++++||+|++|+++|+||.+|+++.+...
T Consensus 70 --------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~ 131 (213)
T 1vr9_A 70 --------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA 131 (213)
T ss_dssp --------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred --------------CCCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence 14689999999999999999999999999999999999999889999999999999987653
No 39
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.81 E-value=1.3e-19 Score=138.43 Aligned_cols=127 Identities=24% Similarity=0.397 Sum_probs=108.2
Q ss_pred CCCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 79 ~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
.+..++|+++ + ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+..+......
T Consensus 19 ~l~~~~v~~~--~--~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~------------ 82 (152)
T 2uv4_A 19 SLEELQIGTY--A--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY------------ 82 (152)
T ss_dssp BHHHHTCSBC--S--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSC------------
T ss_pred hHHHccCCcc--C--CceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhh------------
Confidence 4566788887 4 68999999999999999999999999999988999999999999875321100
Q ss_pred ccccchhHHHHHHhhccCCccccccc------CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMT------PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~------~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
.....++.++|. ++++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|++++
T Consensus 83 --------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~ 148 (152)
T 2uv4_A 83 --------------NNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQA 148 (152)
T ss_dssp --------------CCTTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred --------------hhhcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHH
Confidence 012467888886 678999999999999999999999999999988999999999999998
Q ss_pred HHH
Q 025984 233 ALQ 235 (245)
Q Consensus 233 ~~~ 235 (245)
+.+
T Consensus 149 l~~ 151 (152)
T 2uv4_A 149 LVL 151 (152)
T ss_dssp HC-
T ss_pred HHh
Confidence 754
No 40
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=139.99 Aligned_cols=134 Identities=18% Similarity=0.313 Sum_probs=111.3
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC--CCcEEEEEehhhhhhhhcccCCCCCCCCCCccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~--~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 157 (245)
....+|+++|.+ +++++++++++.++++.|.+++++.+||+|+ +|+++|+|+..|+..+....... .
T Consensus 10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~-----~---- 78 (164)
T 2pfi_A 10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS-----R---- 78 (164)
T ss_dssp CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC--------------
T ss_pred ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc-----c----
Confidence 456799999998 8999999999999999999999999999996 78999999999998764211000 0
Q ss_pred cccccchhHHHHHHhhccCCcccccccCC------ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHH
Q 025984 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPA------PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVR 231 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~------~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~ 231 (245)
......++.++|..+ +.++.+++++.+++++|.+.+.+++||+| +|+++|+||.+||++
T Consensus 79 --------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~ 143 (164)
T 2pfi_A 79 --------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKK 143 (164)
T ss_dssp ----------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHH
T ss_pred --------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHH
Confidence 001235677777765 78999999999999999999999999999 799999999999999
Q ss_pred HHHHhHHH
Q 025984 232 AALQIKHA 239 (245)
Q Consensus 232 ~~~~~~~~ 239 (245)
++.+..+.
T Consensus 144 ~~~~~~~~ 151 (164)
T 2pfi_A 144 AISNLTNP 151 (164)
T ss_dssp HHHHHHSC
T ss_pred HHHhhhCC
Confidence 99876543
No 41
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.81 E-value=2e-19 Score=151.65 Aligned_cols=183 Identities=19% Similarity=0.280 Sum_probs=139.3
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccc--cc---cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
.+.++..+.++.++...+.+... .++... +. -....+..... .......+++++|.+ ++.++++++++.
T Consensus 102 ~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~---~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 176 (296)
T 3ddj_A 102 NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY---KDLDEIFPVKVFMST--KVQTIYKEVRLD 176 (296)
T ss_dssp SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG---GGSCCCCBHHHHSBC--SCCCEETTSBHH
T ss_pred CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhh---hcccccccHHHhhcC--CCeEECCCCCHH
Confidence 45577788899999998876654 343332 11 11111111100 112345599999987 899999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccC
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP 185 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~ 185 (245)
++++.|.+++++.+||+|++|+++|+|+..|++.+... .|..+.. ......++.++|.+
T Consensus 177 ~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~----------------~~~~~~~-----~~~~~~~v~~~m~~ 235 (296)
T 3ddj_A 177 QAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK----------------AVDKLDP-----DYFYGKVVKDVMVT 235 (296)
T ss_dssp HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH----------------HHHHTCT-----HHHHTCBHHHHSBC
T ss_pred HHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH----------------HHhhcCh-----hhhcCcCHHHHhCC
Confidence 99999999999999999999999999999999875310 0000000 11236789999999
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhHHHh
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAT 240 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~~~~ 240 (245)
+++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+||++++.+.....
T Consensus 236 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~~~ 290 (296)
T 3ddj_A 236 NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVME 290 (296)
T ss_dssp CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhcch
Confidence 9999999999999999999999999999998999999999999999999876544
No 42
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.81 E-value=2.8e-19 Score=150.66 Aligned_cols=124 Identities=27% Similarity=0.388 Sum_probs=113.2
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~ 154 (245)
....+|+++|++ +++++++++++.++++.|.++ +++++||+|++|+++|+|+.+|++.+.
T Consensus 134 ~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~------------- 198 (286)
T 2oux_A 134 YEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND------------- 198 (286)
T ss_dssp SCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-------------
T ss_pred CChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC-------------
Confidence 456799999998 899999999999999999987 788899999989999999999998641
Q ss_pred ccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
...++.++|.+++++|++++++.+++++|.+++.+++||||++|+++|+||..|+++.+.
T Consensus 199 --------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 199 --------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 258 (286)
T ss_dssp --------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred --------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 257899999998999999999999999999999999999998999999999999999987
Q ss_pred HhHH
Q 025984 235 QIKH 238 (245)
Q Consensus 235 ~~~~ 238 (245)
+...
T Consensus 259 ~e~~ 262 (286)
T 2oux_A 259 DEAA 262 (286)
T ss_dssp HHHH
T ss_pred HHhH
Confidence 6543
No 43
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.81 E-value=1.7e-19 Score=138.30 Aligned_cols=127 Identities=25% Similarity=0.445 Sum_probs=109.9
Q ss_pred ceecccccCC----CceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 83 YTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 83 ~~v~~im~~~----~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
.+|+++|++. .++.++.+++++.+|++.|.+++++.+||++ +|+++|+|+..|+.++....+.
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~------------ 73 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER------------ 73 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC------------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC------------
Confidence 4799999853 3679999999999999999999999999965 7899999999999876321110
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.....++.++|.+++.++.+++++.+++++|.+.+.+++||+| +|+++|+||.+||++++....
T Consensus 74 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~ 137 (157)
T 4fry_A 74 --------------SSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQ 137 (157)
T ss_dssp --------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred --------------CccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence 0136789999999999999999999999999999999999999 799999999999999988654
No 44
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.80 E-value=6.4e-19 Score=147.84 Aligned_cols=122 Identities=34% Similarity=0.487 Sum_probs=109.3
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~ 155 (245)
...+++++|++ +++++++++++.++++.|.++ ++..+||+|++|+++|+|+.+|++...
T Consensus 133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~-------------- 196 (278)
T 2yvy_A 133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD-------------- 196 (278)
T ss_dssp CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC--------------
T ss_pred CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC--------------
Confidence 46689999998 899999999999999999987 689999999889999999999998631
Q ss_pred cccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
...++.++|.+++++|++++++.+++++|.+++.+.+||||++|+++|+||..|+++.+.+
T Consensus 197 -------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 197 -------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp -------------------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred -------------------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence 2578999998889999999999999999999999999999989999999999999998876
Q ss_pred hH
Q 025984 236 IK 237 (245)
Q Consensus 236 ~~ 237 (245)
..
T Consensus 258 e~ 259 (278)
T 2yvy_A 258 EA 259 (278)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 45
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.79 E-value=1.9e-18 Score=145.65 Aligned_cols=174 Identities=24% Similarity=0.287 Sum_probs=137.3
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccccc---cccccccccccCCCCC---------CCCcceecccccCCCceeEE
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS---SAVFASGTLTANSAAP---------SSGVYTVGDFMTTKEELHVV 98 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~v~~im~~~~~~~~v 98 (245)
.++++..+.++.+++..|.+... .++...+. -+...+.......... .....+++++|++ ++.++
T Consensus 29 ~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v 106 (296)
T 3ddj_A 29 NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--NPVTV 106 (296)
T ss_dssp SCCEECTTSBHHHHHHHTTGGGCCEEEEESSSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--SCCCE
T ss_pred CCcEECCCccHHHHHHHHHHCCCceEEEECCeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccC--CCEEE
Confidence 57789999999999999987764 33332221 1111121111100000 0125689999998 89999
Q ss_pred CCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCc
Q 025984 99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKM 178 (245)
Q Consensus 99 ~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (245)
.+++++.++++.|.+++++.+||+|++|+++|+++.+|++.+... .....+
T Consensus 107 ~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~-----------------------------~~~~~~ 157 (296)
T 3ddj_A 107 YNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD-----------------------------LDEIFP 157 (296)
T ss_dssp ETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG-----------------------------SCCCCB
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhc-----------------------------cccccc
Confidence 999999999999999999999999999999999999999875321 123568
Q ss_pred ccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 179 VGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 179 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
+.++|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||.+|+++++...
T Consensus 158 v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~ 215 (296)
T 3ddj_A 158 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA 215 (296)
T ss_dssp HHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred HHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence 9999999899999999999999999999999999999899999999999999998743
No 46
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.78 E-value=9.3e-19 Score=144.00 Aligned_cols=151 Identities=22% Similarity=0.279 Sum_probs=107.0
Q ss_pred cceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCC------------
Q 025984 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA------------ 149 (245)
Q Consensus 82 ~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~------------ 149 (245)
..+|+++|++ +++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+.++.........
T Consensus 6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~ 83 (245)
T 3l2b_A 6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL 83 (245)
T ss_dssp CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence 5689999998 89999999999999999999999999999998999999999999976421110000
Q ss_pred ---------CC-C------------CC-cccc------------cccc--------------------------------
Q 025984 150 ---------DN-S------------MF-PEVD------------STWK-------------------------------- 162 (245)
Q Consensus 150 ---------~~-~------------~~-~~~~------------~~~~-------------------------------- 162 (245)
.. . +. ..+. ..++
T Consensus 84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~ 163 (245)
T 3l2b_A 84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKN 163 (245)
T ss_dssp HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHH
T ss_pred HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHc
Confidence 00 0 00 0000 0000
Q ss_pred -------chhHHHHHHhhccCCccccccc-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 163 -------TFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 163 -------~~~~~~~~~~~~~~~~v~~~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
.+..+.-........++.++|+ +++.++.+++++.+++++|.+++++++||+|++|+++|+||.+|++++..
T Consensus 164 ~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~~ 243 (245)
T 3l2b_A 164 NITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHK 243 (245)
T ss_dssp TCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-------
T ss_pred CCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchhh
Confidence 0000000001123567899999 88999999999999999999999999999998899999999999998754
No 47
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.78 E-value=1.9e-18 Score=147.35 Aligned_cols=176 Identities=19% Similarity=0.266 Sum_probs=132.1
Q ss_pred cccccCCCCchhhhhhhhccCC-ccccccccc------c----cccccccccC--CCCCCCCcceeccc---ccCCCcee
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS------A----VFASGTLTAN--SAAPSSGVYTVGDF---MTTKEELH 96 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~------~----~~~~~~~~~~--~~~~~~~~~~v~~i---m~~~~~~~ 96 (245)
+.++..+.++.++...+.+... .++...+.. + ...+....+. .........+++++ |.+ ++.
T Consensus 124 ~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~--~~~ 201 (323)
T 3t4n_C 124 TASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQD--NMK 201 (323)
T ss_dssp CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCT--TCC
T ss_pred ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCC--CcE
Confidence 4566778888999888865544 333222111 0 0000000000 00012345689999 877 799
Q ss_pred EECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccC
Q 025984 97 VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNG 176 (245)
Q Consensus 97 ~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (245)
++.+++++.++.+.|.+++++.+||+|++|+++|+|+..|++++.... ......
T Consensus 202 ~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~--------------------------~~~~~~ 255 (323)
T 3t4n_C 202 SCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG--------------------------IYNDLS 255 (323)
T ss_dssp CBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTT--------------------------HHHHTT
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhc--------------------------hhhhcc
Confidence 999999999999999999999999999999999999999998763200 001235
Q ss_pred CcccccccC------CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 177 KMVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 177 ~~v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
.++.++|.+ ++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++...
T Consensus 256 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 256 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp SBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 688999987 789999999999999999999999999999889999999999999998764
No 48
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.77 E-value=2.1e-18 Score=144.19 Aligned_cols=198 Identities=18% Similarity=0.232 Sum_probs=133.0
Q ss_pred cccccCCCCchhhhhhhhccCC-ccccccc--c---ccccccccc-ccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR--S---SAVFASGTL-TANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~---~~~~~~~~~-~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
.+++..+.++.++...+.+... .++...+ . -....+... .+. ........+++++|.+ ++.++++++++.
T Consensus 70 ~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~-~~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 146 (282)
T 2yzq_A 70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA-KSEKYKGVEIEPYYQR--YVSIVWEGTPLK 146 (282)
T ss_dssp CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT-TCSGGGGCBSTTTSBS--CCCCEETTSBHH
T ss_pred CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh-ccCCcccCcHHHHhCC--CCEEECCCCCHH
Confidence 5677889999999999876654 3333221 1 111112111 111 0112345689999987 799999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhccc-CCCCCCCCCCcc----ccccccchhHHHHHHhhccCCccc
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-GSGRADNSMFPE----VDSTWKTFNEVQKLLSKTNGKMVG 180 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~ 180 (245)
++.+.|.+++++.+||+|++|+++|+|+..|++...... ........+... ....+..+.. .........+++
T Consensus 147 ~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~ 224 (282)
T 2yzq_A 147 AALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFE--KFELQLPNKPVA 224 (282)
T ss_dssp HHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------------------------CCCBGG
T ss_pred HHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHh--HhhhhhccCCHH
Confidence 999999999999999999889999999999998321000 000000000000 0011111100 001123467899
Q ss_pred ccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 181 DLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 181 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
++|.+++.++.+++++.+|+++|.+.+++++||+|++|+++|+||++|+++++.+
T Consensus 225 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 225 EIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp GTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred HhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence 9999999999999999999999999999999999977899999999999987654
No 49
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.76 E-value=1.2e-18 Score=145.27 Aligned_cols=181 Identities=15% Similarity=0.246 Sum_probs=131.8
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccc--cc---cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
.+.++..+.++.++...+.++.. .++... +. -....+...... .......+++++|.+ ++.++++++++.
T Consensus 93 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~--~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 168 (280)
T 3kh5_A 93 NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALL--DKIDENEVIDDYITR--DVIVATPGERLK 168 (280)
T ss_dssp SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHG--GGSCTTCBSGGGCBC--SCCCBCTTCBHH
T ss_pred CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHh--hcCCCCCCHHHHhCC--CCeEECCCCcHH
Confidence 46677888999999999877654 333322 11 111111111100 112234589999988 799999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccC
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP 185 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~ 185 (245)
++++.|.+++++.+||+ ++|+++|+|+.+|+++..... ..|..+.. .........++.++|.+
T Consensus 169 ~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~--------------~~~~~~~~--~~~~~~~~~~v~~~m~~ 231 (280)
T 3kh5_A 169 DVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSD--------------WAFNHMQT--GNVREITNVRMEEIMKR 231 (280)
T ss_dssp HHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSH--------------HHHHHHHS--CCTHHHHHCBHHHHSBS
T ss_pred HHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhh--------------hhhhhhcc--cchhhhhCCcHHHHhcC
Confidence 99999999999999999 578999999999998763200 00000000 00001135689999999
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 186 APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 186 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
++.++++++++.+|+++|.+.+.+++||+|++|+++|+||.+|+++++
T Consensus 232 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 232 DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence 999999999999999999999999999999888999999999999875
No 50
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.75 E-value=9e-18 Score=139.91 Aligned_cols=173 Identities=20% Similarity=0.343 Sum_probs=133.7
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc--c----cccccccccccCC----------CCC---CCCcceecccccC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAVFASGTLTANS----------AAP---SSGVYTVGDFMTT 91 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~~~~----------~~~---~~~~~~v~~im~~ 91 (245)
.+.++..+.++.+++..|.++.. .++...+ . -....+....... ... .....+++++|++
T Consensus 13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 92 (280)
T 3kh5_A 13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEE 92 (280)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBC
T ss_pred CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCC
Confidence 46678889999999999987665 4444432 1 1111111110000 000 0124589999998
Q ss_pred CCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHH
Q 025984 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLL 171 (245)
Q Consensus 92 ~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (245)
++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|+.+.....
T Consensus 93 --~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~--------------------------- 143 (280)
T 3kh5_A 93 --NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK--------------------------- 143 (280)
T ss_dssp --SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGG---------------------------
T ss_pred --CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhc---------------------------
Confidence 899999999999999999999999999999999999999999998753210
Q ss_pred hhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 172 SKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 172 ~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.....++.++|.+++.++.+++++.++++.|.+.+.+++||++ +|+++|+||.+|+++++..
T Consensus 144 -~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~Givt~~dl~~~~~~ 205 (280)
T 3kh5_A 144 -IDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGS 205 (280)
T ss_dssp -SCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHTS
T ss_pred -CCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHhh
Confidence 1124589999998899999999999999999999999999994 7999999999999998854
No 51
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.75 E-value=1.3e-17 Score=149.65 Aligned_cols=123 Identities=34% Similarity=0.478 Sum_probs=112.2
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhc-----CCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCC
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~-----~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~ 154 (245)
....+++++|++ +++++++++++.++.+.|+++ ++.++||+|++|+++|+|+.+|++...
T Consensus 152 ~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~------------- 216 (473)
T 2zy9_A 152 YEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD------------- 216 (473)
T ss_dssp SCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC-------------
T ss_pred CCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC-------------
Confidence 456799999998 899999999999999999986 478999999889999999999998631
Q ss_pred ccccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
.+.++.++|.+++.++++++++.+++++|.+++.+.+||||++|+++|+||.+|+++.+.
T Consensus 217 --------------------~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~ 276 (473)
T 2zy9_A 217 --------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE 276 (473)
T ss_dssp --------------------TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred --------------------CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHH
Confidence 267899999988999999999999999999999999999999999999999999999987
Q ss_pred HhH
Q 025984 235 QIK 237 (245)
Q Consensus 235 ~~~ 237 (245)
+..
T Consensus 277 ~e~ 279 (473)
T 2zy9_A 277 AEA 279 (473)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 52
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.72 E-value=4.6e-17 Score=135.93 Aligned_cols=167 Identities=20% Similarity=0.246 Sum_probs=113.9
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccc-cccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHHHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALE 109 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~~~ 109 (245)
.+.++..+.++.++...+.+... .++... +..+...-....+ .......+++++|.+ ++.++++++++.++++
T Consensus 10 ~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl---~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~ 84 (282)
T 2yzq_A 10 NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI---LVNPDEEQLAMLVKR--DVPVVKENDTLKKAAK 84 (282)
T ss_dssp SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------CCCBS--CCCEEETTSBHHHHHH
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHH---HhhhccCCHHHHcCC--CCcEECCCCcHHHHHH
Confidence 35567778888888888866554 344333 1111110000000 112346789999998 7899999999999999
Q ss_pred HHHhcCCceeEEEcCCCcEEEEEehhhhhh-hhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccCCce
Q 025984 110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPV 188 (245)
Q Consensus 110 ~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~ 188 (245)
.|.+++.+.+||+|++|+++|+++..|+.+ +.... ......++.++|..++.
T Consensus 85 ~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~---------------------------~~~~~~~v~~~m~~~~~ 137 (282)
T 2yzq_A 85 LMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS---------------------------EKYKGVEIEPYYQRYVS 137 (282)
T ss_dssp HHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC---------------------------SGGGGCBSTTTSBSCCC
T ss_pred HHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhcc---------------------------CCcccCcHHHHhCCCCE
Confidence 999999999999998899999999999987 53210 01124678899988899
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984 189 VVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230 (245)
Q Consensus 189 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll 230 (245)
++.+++++.++++.|.+.+.+++||+|++|+++|+||..|++
T Consensus 138 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~ 179 (282)
T 2yzq_A 138 IVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179 (282)
T ss_dssp CEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence 999999999999999999999999999889999999999999
No 53
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.72 E-value=2.4e-18 Score=159.49 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=109.3
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHH-hcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCC-CCCccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN-SMFPEV 157 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~-~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~ 157 (245)
..+++|+|+|+++.+++++++++++.++.+.|. +++++.+||+|++|+++|+|+.+|+.+...........+ ......
T Consensus 450 ~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~ 529 (632)
T 3org_A 450 SPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL 529 (632)
T ss_dssp CTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC--------------
T ss_pred cccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence 367899999995448999999999999999999 799999999999999999999999997643211100000 000000
Q ss_pred -cccccchh-HHHHHHh-----------------hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q 025984 158 -DSTWKTFN-EVQKLLS-----------------KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG 218 (245)
Q Consensus 158 -~~~~~~~~-~~~~~~~-----------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g 218 (245)
...+..+. ....... .....++.++|+++|.++++++++.+++++|.+++.+++||+ ++|
T Consensus 530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G 608 (632)
T 3org_A 530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG 608 (632)
T ss_dssp -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence 00000000 0000000 011224889999999999999999999999999999999999 589
Q ss_pred cEEEEEEhHHHHHHHHHh
Q 025984 219 KLVGIITRGNVVRAALQI 236 (245)
Q Consensus 219 ~~vGiIt~~dll~~~~~~ 236 (245)
+++|+||++|+++++.+.
T Consensus 609 ~lvGIVT~~Dll~~~~~~ 626 (632)
T 3org_A 609 KLVGIVEREDVAYGYSNS 626 (632)
T ss_dssp EEEEEEEGGGTEECCCC-
T ss_pred EEEEEEehhhHHHHHhhh
Confidence 999999999998876554
No 54
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.72 E-value=6.3e-17 Score=138.57 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=129.4
Q ss_pred ccccCCCCchhhhhhhhccCC-ccccccc--cc----c----cccccccccC--CCCCCCCcceecc---cccCCCceeE
Q 025984 34 PCLLLSRPGCRVFSVLATSSD-RVSALRR--SS----A----VFASGTLTAN--SAAPSSGVYTVGD---FMTTKEELHV 97 (245)
Q Consensus 34 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~----~----~~~~~~~~~~--~~~~~~~~~~v~~---im~~~~~~~~ 97 (245)
.++..+.++.++...+.+... .++...+ .. . ...+...... .........++++ +|.+ ++.+
T Consensus 120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~--~~~~ 197 (334)
T 2qrd_G 120 IYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWS--NLAT 197 (334)
T ss_dssp CCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCS--SCCC
T ss_pred eeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCcccC--CceE
Confidence 566778888899988876554 3332211 10 1 1111000000 0000123467888 4877 7999
Q ss_pred ECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCC
Q 025984 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGK 177 (245)
Q Consensus 98 v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (245)
+++++++.++++.|.+++++.+||+|++|+++|+|+..|++.+..... ......
T Consensus 198 v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~--------------------------~~~~~~ 251 (334)
T 2qrd_G 198 ASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGD--------------------------YSNLDL 251 (334)
T ss_dssp BCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSC--------------------------GGGGGS
T ss_pred ECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccc--------------------------cccccC
Confidence 999999999999999999999999998899999999999987632100 001246
Q ss_pred cccccccC------CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 178 MVGDLMTP------APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 178 ~v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
++.++|.+ +++++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++....
T Consensus 252 ~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~ 317 (334)
T 2qrd_G 252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK 317 (334)
T ss_dssp BHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCC
T ss_pred cHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcc
Confidence 78888874 7899999999999999999999999999998899999999999999987654
No 55
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.71 E-value=3.2e-17 Score=149.10 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=111.8
Q ss_pred CCCCcceecccccCCCceeEECCC-CCHHHHHHHHHhcCCceeEEEc-CCCcEEEEEehhhhhhhhcccCCCCCCCCCCc
Q 025984 78 PSSGVYTVGDFMTTKEELHVVKPT-TTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (245)
Q Consensus 78 ~~~~~~~v~~im~~~~~~~~v~~~-~~v~~~~~~~~~~~~~~~~Vvd-~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~ 155 (245)
..+...+|+++|++ +++++.++ +++.+++++|.+++++.+||+| ++|+++|+||.+||+++....
T Consensus 379 ~~l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~----------- 445 (527)
T 3pc3_A 379 HWWWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM----------- 445 (527)
T ss_dssp CTTTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH-----------
T ss_pred ccccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc-----------
Confidence 34667899999998 89999999 9999999999999999999999 789999999999998753210
Q ss_pred cccccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEEhHHHHH
Q 025984 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD----GKLVGIITRGNVVR 231 (245)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~----g~~vGiIt~~dll~ 231 (245)
......++.++|.++++++.+++++.+++++|.+.++ +||||++ |+++||||+.||++
T Consensus 446 ----------------~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~ 507 (527)
T 3pc3_A 446 ----------------NRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTT 507 (527)
T ss_dssp ----------------CCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHH
T ss_pred ----------------cCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHH
Confidence 0123678999999999999999999999999977664 7999974 89999999999999
Q ss_pred HHHHhH
Q 025984 232 AALQIK 237 (245)
Q Consensus 232 ~~~~~~ 237 (245)
++.+..
T Consensus 508 ~l~~~~ 513 (527)
T 3pc3_A 508 FIAAGK 513 (527)
T ss_dssp HHHTCC
T ss_pred HHHhcc
Confidence 998765
No 56
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.69 E-value=8.8e-17 Score=145.21 Aligned_cols=118 Identities=25% Similarity=0.441 Sum_probs=106.4
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC--CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~--~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
+.++.|.+ +++++++++++.++.++|.+++++.+||+|+ +|+++|+|+.+|++..
T Consensus 114 ~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~--------------------- 170 (511)
T 3usb_A 114 RSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI--------------------- 170 (511)
T ss_dssp TSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---------------------
T ss_pred cccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---------------------
Confidence 44566766 7899999999999999999999999999998 8999999999999742
Q ss_pred cchhHHHHHHhhccCCcccccccC-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 162 KTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.....++.++|++ +++++++++++.+++++|.+++.+.+||||++|+++|+||.+|+++.+..
T Consensus 171 -----------~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 171 -----------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp -----------CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred -----------ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 1136789999997 89999999999999999999999999999999999999999999998764
No 57
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.68 E-value=2.3e-16 Score=134.95 Aligned_cols=178 Identities=20% Similarity=0.266 Sum_probs=127.1
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccc--ccc----ccccccccccC-----CCCCCCCcceeccc--cc-CCCcee
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS----AVFASGTLTAN-----SAAPSSGVYTVGDF--MT-TKEELH 96 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~----~~~~~~~~~~~-----~~~~~~~~~~v~~i--m~-~~~~~~ 96 (245)
.+.++..+.++.++...+.+... .++... +.. ....+...... .....+...+++++ |. . ++.
T Consensus 127 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~ 204 (330)
T 2v8q_E 127 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA--NIA 204 (330)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCS--SCC
T ss_pred CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcC--Cce
Confidence 45667788889999988865543 333222 111 11111100000 00011123355555 43 4 689
Q ss_pred EECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccC
Q 025984 97 VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNG 176 (245)
Q Consensus 97 ~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (245)
++.+++++.++.+.|.+++++.+||+|++|+++|+|+..|++.+...... ....
T Consensus 205 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~--------------------------~~~~ 258 (330)
T 2v8q_E 205 MVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY--------------------------NNLD 258 (330)
T ss_dssp CEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCC--------------------------CCCS
T ss_pred EECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhcccc--------------------------cccc
Confidence 99999999999999999999999999988999999999999976421100 0013
Q ss_pred Ccccccc------cCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 177 KMVGDLM------TPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 177 ~~v~~~m------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.++.++| .+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++.+..
T Consensus 259 ~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~ 325 (330)
T 2v8q_E 259 VSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG 325 (330)
T ss_dssp SBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred CcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence 4566666 478999999999999999999999999999998899999999999999987653
No 58
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.66 E-value=2.5e-16 Score=134.67 Aligned_cols=144 Identities=20% Similarity=0.243 Sum_probs=110.1
Q ss_pred CCcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCcccc
Q 025984 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (245)
Q Consensus 80 ~~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (245)
+...+|+++|+++.++.++++++++.+|++.|.+++++.+||+|++ ++++|+|+..|++.++...... .. ......
T Consensus 32 l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~-~~-~~~~~l- 108 (330)
T 2v8q_E 32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-AL-VQIYEL- 108 (330)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHH-HT-TTCCCG-
T ss_pred HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhc-cc-cchhHH-
Confidence 3567999999655489999999999999999999999999999987 7899999999998753210000 00 000000
Q ss_pred ccccchhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHHHHHHHH
Q 025984 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA-DGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~vGiIt~~dll~~~~~ 235 (245)
... .+..+ ...+.++|.+++.++.+++++.+++++|.+.+.+++||+|+ +|+++|+||.+|+++++..
T Consensus 109 ---~~~-~~~~~-----~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~ 177 (330)
T 2v8q_E 109 ---EEH-KIETW-----REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL 177 (330)
T ss_dssp ---GGC-BHHHH-----HHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred ---hhc-cHHHH-----HHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHH
Confidence 000 00000 12345778888999999999999999999999999999998 8999999999999998764
No 59
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.64 E-value=1.6e-15 Score=129.20 Aligned_cols=181 Identities=17% Similarity=0.152 Sum_probs=127.7
Q ss_pred cccccccCCCCchhhhhhhhccCC-cccccccc------ccccccccccc------CC---CCCCCCcce------eccc
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS------SAVFASGTLTA------NS---AAPSSGVYT------VGDF 88 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~------~~---~~~~~~~~~------v~~i 88 (245)
.++.++..+.++.+++..|.+... .++...+. -+...++...+ .. .-....... +.++
T Consensus 40 ~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~ 119 (323)
T 3t4n_C 40 YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGV 119 (323)
T ss_dssp EEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC
T ss_pred CcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 346677888999999999887765 44443321 00000100000 00 000011122 3334
Q ss_pred ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCc-----EEEEEehhhhhhhhcccCCCCCCCCCCccccccccc
Q 025984 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 163 (245)
Q Consensus 89 m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~-----~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (245)
|.+ +++++++++++.++++.|.+++++.+||+|++|. ++|+|+.+|++.+......
T Consensus 120 ~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~----------------- 180 (323)
T 3t4n_C 120 DQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCR----------------- 180 (323)
T ss_dssp ------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCG-----------------
T ss_pred CCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCC-----------------
Confidence 566 7899999999999999999999999999998775 9999999999975321000
Q ss_pred hhHHHHHHhhccCCccccc---ccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 164 FNEVQKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 164 ~~~~~~~~~~~~~~~v~~~---m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
.......++.++ |.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+++++....
T Consensus 181 -------~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~ 250 (323)
T 3t4n_C 181 -------ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI 250 (323)
T ss_dssp -------GGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTH
T ss_pred -------chhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhch
Confidence 012235688999 8888999999999999999999999999999998899999999999999887543
No 60
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.63 E-value=2.5e-15 Score=135.52 Aligned_cols=118 Identities=28% Similarity=0.472 Sum_probs=108.3
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEc--CCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccc
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd--~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
.++++|.+ ++.++++++++.++++.|.+++++.+||+| ++++++|+|+.+|++...
T Consensus 91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~-------------------- 148 (491)
T 1zfj_A 91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS-------------------- 148 (491)
T ss_dssp HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--------------------
T ss_pred hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--------------------
Confidence 56789998 899999999999999999999999999999 789999999999998631
Q ss_pred cchhHHHHHHhhccCCcccccccC-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 162 KTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
....++.++|++ +++++++++++.+++++|.+++.+.+||||++|+++|+||.+|+++.+..
T Consensus 149 ------------~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 149 ------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp ------------CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred ------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 125789999998 89999999999999999999999999999999999999999999999874
No 61
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.61 E-value=2.1e-16 Score=142.29 Aligned_cols=117 Identities=22% Similarity=0.346 Sum_probs=92.7
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
.+++++|.. +++++++++++.++.++|.+++++.+||+|++|+++|+|+.+||+..
T Consensus 89 k~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---------------------- 144 (496)
T 4fxs_A 89 KIFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---------------------- 144 (496)
T ss_dssp HHCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC----------------------
T ss_pred ccccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc----------------------
Confidence 356788987 89999999999999999999999999999998999999999999732
Q ss_pred chhHHHHHHhhccCCccccccc-C-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 163 TFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~~m~-~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
.....++.++|+ + +++++++++++.+++++|.+++++.+||||++|+++|+||.+|+++..
T Consensus 145 ----------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 145 ----------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp ----------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred ----------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence 113678999999 4 489999999999999999999999999999999999999999999864
No 62
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.60 E-value=4.7e-17 Score=146.97 Aligned_cols=120 Identities=28% Similarity=0.319 Sum_probs=2.5
Q ss_pred eeccc-ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC---CcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 84 TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 84 ~v~~i-m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~---g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
...++ |++ +++++++++++.+++++|.+++++.+||+|++ |+++|+|+.+|++...
T Consensus 97 ~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~------------------ 156 (503)
T 1me8_A 97 KNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDL------------------ 156 (503)
T ss_dssp HTTTC---------------------------------------------------------------------------
T ss_pred hhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhh------------------
Confidence 33445 888 89999999999999999999999999999987 8999999999998520
Q ss_pred cccchhHHHHHHhhccCCcccccccCC--ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 160 TWKTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
.....++.++|+++ ++++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++.+...
T Consensus 157 -------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~ 222 (503)
T 1me8_A 157 -------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH 222 (503)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred -------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence 11257899999987 99999999999999999999999999999999999999999999987643
No 63
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.60 E-value=6.8e-15 Score=125.85 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=105.8
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEehhhhhhhhcccCCCCCCCCCCccccc
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (245)
...+++++|+++.+++++++++++.++++.|.+++++.+||+|++ |+++|+|+.+|++.+..................
T Consensus 20 ~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~- 98 (334)
T 2qrd_G 20 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEID- 98 (334)
T ss_dssp HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGG-
T ss_pred hcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHh-
Confidence 357999999886678999999999999999999999999999986 899999999999875311000000000000000
Q ss_pred cccchhHHHHHHhhccCCcccccccCCc--eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCc-----EEEEEEhHHHHHH
Q 025984 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAP--VVVRETTNLEDAARLLLETKYRRLPVVDADGK-----LVGIITRGNVVRA 232 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~--~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~-----~vGiIt~~dll~~ 232 (245)
......+.+. +.++|.+++ +++.+++++.++++.|.+.+.+++||+|++|. ++|+||.+|++++
T Consensus 99 -~~~~~~i~~~--------l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~ 169 (334)
T 2qrd_G 99 -KFRLLGLREV--------ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKF 169 (334)
T ss_dssp -SCBHHHHHHH--------HHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHH
T ss_pred -hhchhhHHHH--------HHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHH
Confidence 0001111111 123465556 89999999999999999999999999997654 9999999999998
Q ss_pred HHH
Q 025984 233 ALQ 235 (245)
Q Consensus 233 ~~~ 235 (245)
+..
T Consensus 170 ~~~ 172 (334)
T 2qrd_G 170 ISM 172 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 64
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.57 E-value=1.8e-16 Score=143.11 Aligned_cols=118 Identities=32% Similarity=0.530 Sum_probs=6.7
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccc
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 163 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (245)
+++++|.+ +++++++++++.++++.|.+++++.+||+|++|+++|+|+.+|++...
T Consensus 96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~---------------------- 151 (494)
T 1vrd_A 96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK---------------------- 151 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc----------------------
Confidence 56788988 899999999999999999999999999999889999999999998520
Q ss_pred hhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 164 FNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 164 ~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
....++.++|.+ +++++.+++++.+++++|.+.+++.+||||++|+++|+||.+|+++.+..
T Consensus 152 ----------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 152 ----------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp -------------------------------------------------------------------CHHHHTC
T ss_pred ----------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence 125789999997 89999999999999999999999999999999999999999999998754
No 65
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.55 E-value=3e-16 Score=141.09 Aligned_cols=117 Identities=30% Similarity=0.417 Sum_probs=3.5
Q ss_pred ceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccccc
Q 025984 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (245)
Q Consensus 83 ~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
.+++++|.. +++++++++++.++.++|.+++++.+||+| +|+++|+|+.+||...
T Consensus 88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~---------------------- 142 (490)
T 4avf_A 88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK---------------------- 142 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc----------------------
Confidence 467888987 899999999999999999999999999999 7899999999999742
Q ss_pred chhHHHHHHhhccCCccccccc-C-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 163 TFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~~m~-~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
.....++.++|+ + +++++++++++.+++++|.+++++.+||||++|+++|+||++|+++...
T Consensus 143 ----------~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 143 ----------PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ----------cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence 113578999999 4 6899999999999999999999999999999999999999999998754
No 66
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.47 E-value=3.3e-15 Score=132.61 Aligned_cols=110 Identities=31% Similarity=0.491 Sum_probs=0.0
Q ss_pred ccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchh
Q 025984 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN 165 (245)
Q Consensus 89 m~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
|.. +++++.++.++.++.++|.+++++.+||+|+ +|+++||||.+|+.-.
T Consensus 144 ~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~------------------------- 196 (556)
T 4af0_A 144 FIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ------------------------- 196 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-------------------------
Confidence 444 6899999999999999999999999999986 5799999999998632
Q ss_pred HHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 166 ~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
....++.++|++++++++.+.++++|.++|.++++..+||||++|+++|+||++|+++..
T Consensus 197 --------d~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 197 --------DAETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp --------------------------------------------------------------------
T ss_pred --------ccceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence 135789999999999999999999999999999999999999999999999999998764
No 67
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.47 E-value=7.8e-16 Score=139.52 Aligned_cols=119 Identities=29% Similarity=0.460 Sum_probs=71.4
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcC---CCcEEEEEehhhhhhhhcccCCCCCCCCCCcccccc
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~---~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (245)
++.++|.+ +++++.+++++.++.++|.+++++.+||+|+ +|+++|+|+.+|+.....
T Consensus 109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------------------ 168 (514)
T 1jcn_A 109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------------------ 168 (514)
T ss_dssp TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------------
T ss_pred hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------------------
Confidence 67788987 7899999999999999999999999999997 589999999999975310
Q ss_pred ccchhHHHHHHhhccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
.....++.++|.+ +++++.+++++.+++++|.+.+.+.+||||++|+++|+||++|+++.+.
T Consensus 169 ------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~ 232 (514)
T 1jcn_A 169 ------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD 232 (514)
T ss_dssp ------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred ------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence 0125789999998 8999999999999999999999999999999999999999999987653
No 68
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.41 E-value=1.4e-14 Score=130.36 Aligned_cols=114 Identities=36% Similarity=0.631 Sum_probs=1.8
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccc
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 163 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (245)
...+.|.. ++.++.+++++.++.+.|.+++++.+||+|+ ++++|+|+.+|++. .
T Consensus 94 ~~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-~---------------------- 147 (486)
T 2cu0_A 94 RAERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-R---------------------- 147 (486)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred chhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-C----------------------
Confidence 34567887 8999999999999999999999999999998 89999999999873 0
Q ss_pred hhHHHHHHhhccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 164 ~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
...++.++|.++++++++++++.+++++|.+.+.+.+||||++|+++|+||.+||++.+.
T Consensus 148 -----------~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 148 -----------EGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp ----------------------------------------------------------------------C
T ss_pred -----------CCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 256889999988999999999999999999999999999999999999999999999864
No 69
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.27 E-value=1.6e-11 Score=98.67 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=79.8
Q ss_pred ccccccccCCCCchhhhhhhhccCC-cccccc-cccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 30 ALQLPCLLLSRPGCRVFSVLATSSD-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
...++++..+.++.++...+.++.. .++... +..+...-....+. ......+++++|++ ++.++.+++++.++
T Consensus 20 ~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~---~~~~~~~v~~im~~--~~~~v~~~~~l~~a 94 (213)
T 1vr9_A 20 TQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLL---DLDLDSSVFNKVSL--PDFFVHEEDNITHA 94 (213)
T ss_dssp BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGT---TSCTTSBSGGGCBC--TTCCEETTSBHHHH
T ss_pred cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHH---hhcCCCcHHHHccC--CCEEECCCCcHHHH
Confidence 4456778889999999999887665 444332 22111111111111 11235689999998 89999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhccCCcccccccCC-
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPA- 186 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~- 186 (245)
++.|.+++++.+||+|++|+++|+|+.+|++..... .....+.+.+-
T Consensus 95 ~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~--------------------------------~~~~~~~~~~l~ 142 (213)
T 1vr9_A 95 LLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE--------------------------------ALAMDVPGIRFS 142 (213)
T ss_dssp HHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH--------------------------------SCC---------
T ss_pred HHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH--------------------------------HhcCCCCcEEEE
Confidence 999999999999999988999999999999975321 11112222221
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 025984 187 PVVVRETTNLEDAARLLLETKYRRLPVVDAD 217 (245)
Q Consensus 187 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~ 217 (245)
+.+.....++.++.++|.+.+.+.++|++.+
T Consensus 143 ~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~ 173 (213)
T 1vr9_A 143 VLLEDKPGELRKVVDALALSNINILSVITTR 173 (213)
T ss_dssp -------------------------------
T ss_pred EEeCCCCccHHHHHHHHHHCCCcEEEEEEEe
Confidence 1111333459999999999999999987643
No 70
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.19 E-value=4.5e-11 Score=78.82 Aligned_cols=69 Identities=28% Similarity=0.426 Sum_probs=56.1
Q ss_pred eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhcccCCCCCCCCCCccccccccchhHHHHHHhhc
Q 025984 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (245)
Q Consensus 95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (245)
++++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+.+.....+. ..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~--------------------------~~ 54 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK--------------------------NP 54 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC--------------------------CG
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC--------------------------Cc
Confidence 68899999999999999999999999998 5799999999999864321111 11
Q ss_pred cCCcccccccCCceEe
Q 025984 175 NGKMVGDLMTPAPVVV 190 (245)
Q Consensus 175 ~~~~v~~~m~~~~~~v 190 (245)
.+.+++++|+++|++|
T Consensus 55 ~~~~V~~iMt~~~iTV 70 (70)
T 3ghd_A 55 KEVKVEEIMTKNPVKI 70 (70)
T ss_dssp GGCBGGGTCEECTTCC
T ss_pred ccCCHHHhcCCCCeEC
Confidence 2568999999988764
No 71
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.02 E-value=3.9e-10 Score=87.08 Aligned_cols=60 Identities=37% Similarity=0.583 Sum_probs=56.2
Q ss_pred ccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHH
Q 025984 174 TNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAA 233 (245)
Q Consensus 174 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~ 233 (245)
..+.+|+++|+++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+
T Consensus 15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~ 74 (170)
T 4esy_A 15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGS 74 (170)
T ss_dssp HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGT
T ss_pred HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999998654
No 72
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.96 E-value=1.8e-09 Score=70.57 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=43.1
Q ss_pred eeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 95 ~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+.++.+++++.++++.|.+++++.+||+|+ |+++|+|+.+|+.++.
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~ 47 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKV 47 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 678999999999999999999999999997 8999999999999864
No 73
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=98.93 E-value=3.8e-09 Score=77.59 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=75.6
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc--cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+.++..+.++.++...+.+... .++...+ .. ....+...... -...+++++|++ +.++.+++++
T Consensus 16 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----~~~~~v~~~m~~---~~~v~~~~~l 87 (129)
T 3jtf_A 16 RMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----EPALDIRSLVRP---AVFIPEVKRL 87 (129)
T ss_dssp GCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----CTTSCGGGGCBC---CCEEETTCBH
T ss_pred HeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----cCCcCHHHHhCC---CeEeCCCCcH
Confidence 45678889999999999887665 4443332 11 12222211111 135689999975 7899999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.++++.|.+++.+.+||+|++|+++|+||..|+++.
T Consensus 88 ~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~ 123 (129)
T 3jtf_A 88 NVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQ 123 (129)
T ss_dssp HHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence 999999999999999999998999999999999975
No 74
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=98.90 E-value=4e-09 Score=77.19 Aligned_cols=103 Identities=20% Similarity=0.198 Sum_probs=76.8
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc--c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+.++..+.++.++...+.+... .++...+ . -....+...... ......+++++|++ +.++++++++
T Consensus 14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~---~~~~~~~v~~~m~~---~~~v~~~~~l 87 (127)
T 3nqr_A 14 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR---SDAEAFSMDKVLRT---AVVVPESKRV 87 (127)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGS---TTCCCCCHHHHCBC---CCEEETTCBH
T ss_pred HeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh---ccCCCCCHHHHcCC---CeEECCCCcH
Confidence 36678889999999999876654 4443322 1 122222221111 12356789999965 6789999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.++++.|.+++.+.+||+|++|+++|+||..|++++
T Consensus 88 ~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~ 123 (127)
T 3nqr_A 88 DRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILEL 123 (127)
T ss_dssp HHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence 999999999999999999999999999999999875
No 75
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.90 E-value=3e-09 Score=78.93 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=77.7
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc--c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+.++..+.++.++...+.+... .++...+ . -+...+...... .......+++++|++ +.++++++++
T Consensus 14 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~--~~~~~~~~v~~~m~~---~~~v~~~~~l 88 (136)
T 3lfr_A 14 QMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL--KADGDSDDVKKLLRP---ATFVPESKRL 88 (136)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG--SSSGGGCCGGGTCBC---CCEEETTCBH
T ss_pred HEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH--hccCCCcCHHHHcCC---CeEECCCCcH
Confidence 46678889999999999876654 4443322 1 122222222111 122356689999976 7899999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.++++.|.+++.+.+||+|++|+++|+||..|++++
T Consensus 89 ~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~ 124 (136)
T 3lfr_A 89 NVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQ 124 (136)
T ss_dssp HHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTT
T ss_pred HHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence 999999999999999999999999999999999975
No 76
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.88 E-value=4.7e-09 Score=69.02 Aligned_cols=48 Identities=17% Similarity=0.419 Sum_probs=44.2
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 187 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
++++.+++++.+|+++|.++++.++||+| +|+++|+||.+|+++.+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence 67899999999999999999999999998 6899999999999977543
No 77
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.87 E-value=2.1e-09 Score=78.76 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=77.6
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
.++.+..+.++.++...+.++.. .++...+.. ....+...... .......+++++|.+ ++.++.+++++.+
T Consensus 14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~--~~~~~~~~v~~~m~~--~~~~v~~~~~l~~ 89 (128)
T 3gby_A 14 DYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRK--GWPTVKEKLGEELLE--TVRSYRPGEQLFD 89 (128)
T ss_dssp CSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCS--SSCCTTCBCCGGGCB--CCCCBCTTSBGGG
T ss_pred CcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHh--hCCcccCcHHHHccC--CCcEECCCCCHHH
Confidence 36677789999999999876654 333322221 11222111111 112223679999998 8999999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+++.|.+++.+.+||+|++|+++|+|+..|+++++
T Consensus 90 ~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (128)
T 3gby_A 90 NLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124 (128)
T ss_dssp SHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred HHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence 99999999999999999999999999999999763
No 78
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.85 E-value=2.7e-09 Score=82.52 Aligned_cols=104 Identities=17% Similarity=0.087 Sum_probs=78.3
Q ss_pred cccccccCCCCchhhhhhhhccCC-ccccccc--cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 103 (245)
..+.++..+.++.++...+.++.. .++...+ .. +...+...... .-...+++++| + ++.+++++++
T Consensus 52 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~----~~~~~~v~~im-~--~~~~v~~~~~ 124 (172)
T 3lhh_A 52 SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI----AGERLELVDLV-K--NCNFVPNSLS 124 (172)
T ss_dssp GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH----TTCCCCGGGGC-B--CCEEEETTCC
T ss_pred HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh----hcCcccHHHHh-c--CCeEeCCCCC
Confidence 456788899999999999987665 4444332 11 12222111111 11266899999 5 6899999999
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+.++++.|.+++.+.+||+|++|+++|+||..|++.++
T Consensus 125 l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l 162 (172)
T 3lhh_A 125 GMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDAL 162 (172)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHH
Confidence 99999999999999999999999999999999999763
No 79
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=2.8e-09 Score=78.55 Aligned_cols=105 Identities=14% Similarity=0.059 Sum_probs=77.7
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc--c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+.++..+.++.++...+.++.. .++...+ . -....+...... ........+++++|. ++.++++++++
T Consensus 13 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~-~~~~~~~~~v~~~m~---~~~~v~~~~~l 88 (130)
T 3hf7_A 13 EIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT-EKKEFTKEIMLRAAD---EIYFVPEGTPL 88 (130)
T ss_dssp GCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT-SSSCCCHHHHHHHSB---CCCEEETTCBH
T ss_pred HEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh-ccCccchhhHHHhcc---CCeEeCCCCcH
Confidence 46678889999999999887665 4554321 1 112222221111 112234568999995 48899999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.++++.|.+++.+.+||+|++|+++|+||.+|++++
T Consensus 89 ~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~ 124 (130)
T 3hf7_A 89 STQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEE 124 (130)
T ss_dssp HHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHH
Confidence 999999999999999999999999999999999975
No 80
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.82 E-value=1.3e-08 Score=76.34 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=57.6
Q ss_pred ccCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHHHHHHHHh
Q 025984 174 TNGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 174 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGiIt~~dll~~~~~~ 236 (245)
....+++++|.+ ++.++.+++++.++++.|.+.+.+++||+|++ |+++|+||.+|+++.+...
T Consensus 20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~ 85 (148)
T 3lv9_A 20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE 85 (148)
T ss_dssp GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 347889999998 89999999999999999999999999999987 8999999999999987653
No 81
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=8e-09 Score=78.49 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=75.2
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccccc--c----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--S----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+.++..+.++.++...+.++.. .++...+. . +...+...... . . ...+++++|++ +.++++++++
T Consensus 49 ~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~--~-~-~~~~v~~im~~---~~~v~~~~~l 121 (156)
T 3oi8_A 49 RMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF--N-P-EQFHLKSILRP---AVFVPEGKSL 121 (156)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS--C-G-GGCCHHHHCBC---CCEEETTSBH
T ss_pred HeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH--c-C-CcccHHHHcCC---CEEECCCCCH
Confidence 46778889999999999876654 44433221 1 22222221111 1 1 46789999976 7899999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~ 138 (245)
.++++.|.+++.+.+||+|++|+++|+||..|++
T Consensus 122 ~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 122 TALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp HHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred HHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 9999999999999999999999999999999986
No 82
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=98.79 E-value=5.6e-09 Score=76.72 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=75.5
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc--cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR--SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+.++..+.++.++...+.+... .++...+ .. ....+...... ......+++++|++ +.++++++++
T Consensus 17 ~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~---~~~~~~~v~~~m~~---~~~v~~~~~l 90 (130)
T 3i8n_A 17 VVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ---SGSGQKQLGAVMRP---IQVVLNNTAL 90 (130)
T ss_dssp CCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHH---TTTTTSBHHHHSEE---CCEEETTSCH
T ss_pred HEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHh---cCCCcCCHHHHhcC---CcCcCCCCcH
Confidence 35567889999999999887654 4443322 11 11111111110 11236689999954 7899999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.++++.|.+++.+.+||+|++|+++|+||..|++++
T Consensus 91 ~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~ 126 (130)
T 3i8n_A 91 PKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEH 126 (130)
T ss_dssp HHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHH
Confidence 999999999999999999999999999999999875
No 83
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.78 E-value=1.5e-08 Score=82.67 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=56.9
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
..+++++|.++++++.+++++.+|+++|.+.+++++||+|++|+++|+||..|+++++..
T Consensus 6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~ 65 (245)
T 3l2b_A 6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65 (245)
T ss_dssp CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHC
T ss_pred cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence 578999999999999999999999999999999999999988999999999999999864
No 84
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=98.78 E-value=8.8e-09 Score=77.23 Aligned_cols=108 Identities=20% Similarity=0.247 Sum_probs=76.2
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc-cc----ccccccccccC------------CCCCCCCcceecccccCCC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR-SS----AVFASGTLTAN------------SAAPSSGVYTVGDFMTTKE 93 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~~----~~~~~~~~~~~------------~~~~~~~~~~v~~im~~~~ 93 (245)
.++++..+.++.++...+.+... .++...+ .. +...+...... .........+++++|.+
T Consensus 16 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~-- 93 (152)
T 4gqw_A 16 DLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTP-- 93 (152)
T ss_dssp TCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHHHSEE--
T ss_pred CCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHHhcCC--
Confidence 36677888999999999876654 3333222 11 11111100000 00012345689999998
Q ss_pred ceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 94 ~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+++++++++++.++++.|.+++.+.+||+|++|+++|+|+..|++++.
T Consensus 94 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~ 141 (152)
T 4gqw_A 94 APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAA 141 (152)
T ss_dssp SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 789999999999999999999999999999999999999999999864
No 85
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.77 E-value=2.3e-08 Score=75.17 Aligned_cols=60 Identities=23% Similarity=0.236 Sum_probs=56.1
Q ss_pred CCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 176 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 176 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
..+++++|.+ +++++.+++++.+++++|.+.+.+++||+|++|+++|+||..|+++.+.+
T Consensus 27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence 4689999998 89999999999999999999999999999988999999999999987754
No 86
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.76 E-value=9.3e-09 Score=74.37 Aligned_cols=58 Identities=34% Similarity=0.665 Sum_probs=54.2
Q ss_pred cccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 178 ~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
+++++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++.+..
T Consensus 2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~ 59 (122)
T 3kpb_A 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ 59 (122)
T ss_dssp BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 5778899999999999999999999999999999999988999999999999998764
No 87
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=98.76 E-value=9.2e-09 Score=77.99 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=79.0
Q ss_pred cccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
..+.++..+.++.+++..+.++.. .++...+.. +...+....+..........+++++|.+ ++.++.+++++.
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 98 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTD 98 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHH
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHH
Confidence 346778889999999999876654 333322221 1111111111101122356799999998 899999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
++++.|.+++++.+||+| +|+++|+|+..|++++.
T Consensus 99 ~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l 133 (157)
T 4fry_A 99 ECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSV 133 (157)
T ss_dssp HHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 999999999999999999 79999999999999864
No 88
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=98.74 E-value=1.9e-08 Score=76.64 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=54.4
Q ss_pred CCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 176 GKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 176 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
...++++|.+ ++.++.+++++.+|+.+|.+++++++||+|++|+++|+||.+|+++++...
T Consensus 14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~ 76 (156)
T 3k6e_A 14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEH 76 (156)
T ss_dssp HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHH
T ss_pred hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhc
Confidence 4578889974 688999999999999999999999999999889999999999999987654
No 89
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=98.74 E-value=1.8e-08 Score=76.22 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=56.4
Q ss_pred hccCCccccccc--CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 173 KTNGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 173 ~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
.....+++++|. .++.++.+++++.+|+++|.+.+.+++||+|++|+++|+||.+|+++.+..
T Consensus 11 ~l~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~ 75 (156)
T 3ctu_A 11 TFLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQME 75 (156)
T ss_dssp HHHHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHh
Confidence 334678999998 678999999999999999999999999999988999999999999998865
No 90
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.73 E-value=2.6e-08 Score=64.88 Aligned_cols=48 Identities=17% Similarity=0.421 Sum_probs=44.9
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 187 PVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 187 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
+.++.+++++.+++++|.+.+.+.+||+|+ |+++|+||.+|+++++..
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~ 49 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 678999999999999999999999999996 999999999999998754
No 91
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=98.73 E-value=4.3e-09 Score=79.64 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=76.1
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccc-c---cc---cccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSAL-R---RS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~-~---~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 103 (245)
.+.++..+.++.++...+.++.. .++.. . +. -+...+...... .-...+++++| + ++.++.++++
T Consensus 31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~----~~~~~~v~~~m-~--~~~~v~~~~~ 103 (153)
T 3oco_A 31 SMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR----IDDKAKISTIM-R--DIVSVPENMK 103 (153)
T ss_dssp GCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH----HHTTSBGGGTC-B--CCEEEETTSB
T ss_pred heEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh----cCCCCcHHHHh-C--CCeEECCCCC
Confidence 46677889999999999876654 44433 1 11 111111111000 00256899999 5 6999999999
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+.++++.|.+++.+.+||+|++|+++|+||..|+++++
T Consensus 104 l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l 141 (153)
T 3oco_A 104 VPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEEL 141 (153)
T ss_dssp HHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHH
Confidence 99999999999999999999999999999999999764
No 92
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=98.73 E-value=2.9e-08 Score=79.09 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=76.1
Q ss_pred ccccccCCCCchhhhhhhhcc---C-Cccc-ccccccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATS---S-DRVS-ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
.+.++..+.++.+++..+.+. . ..++ ...+..+...-....+. ......+++++|++ ++.++++++++.+
T Consensus 63 ~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll---~~~~~~~v~~im~~--~~~~v~~~~~l~~ 137 (205)
T 3kxr_A 63 QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF---KHEPHEPLISLLSE--DSRALTANTTLLD 137 (205)
T ss_dssp CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHT---TSCTTSBGGGGCCS--SCCCEETTSCHHH
T ss_pred ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHH---hCCCcchHHHHhcC--CCeEECCCCCHHH
Confidence 577888999999999988763 2 1222 11111111100000001 01245689999988 7999999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+++.|.+++.+.+||+|++|+++|+||..|++...
T Consensus 138 a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i 172 (205)
T 3kxr_A 138 AAEAIEHSREIELPVIDDAGELIGRVTLRAATALV 172 (205)
T ss_dssp HHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 99999999999999999999999999999999764
No 93
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.73 E-value=2.7e-08 Score=75.81 Aligned_cols=60 Identities=33% Similarity=0.501 Sum_probs=55.9
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
..+++++|.++++++.+++++.+|+++|.+.+.+.+||+|++|+++|+||.+||++.+..
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~ 63 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES 63 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHH
Confidence 468899999889999999999999999999999999999988999999999999988764
No 94
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.72 E-value=3.2e-08 Score=73.14 Aligned_cols=57 Identities=28% Similarity=0.503 Sum_probs=53.6
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRA 232 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~ 232 (245)
..+++++|.++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||.+|+++.
T Consensus 6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~ 62 (138)
T 2yzi_A 6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR 62 (138)
T ss_dssp TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred hhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence 578999999999999999999999999999999999999988999999999999854
No 95
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=98.71 E-value=1.8e-08 Score=74.24 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=76.6
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDE 106 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~ 106 (245)
.++++..+.++.++...+.+... .++...+.. ....+...............+++++|.+ ++.++++++++.+
T Consensus 18 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~ 95 (135)
T 2rc3_A 18 TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNED 95 (135)
T ss_dssp CCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHH
T ss_pred CcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHHH
Confidence 46677788899999998876554 333222211 1111111000100112356799999998 8999999999999
Q ss_pred HHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 107 ALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 107 ~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+++.|.+++.+.+||+| +|+++|+|+..|++++.
T Consensus 96 ~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~ 129 (135)
T 2rc3_A 96 CMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA 129 (135)
T ss_dssp HHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHH
Confidence 99999999999999999 79999999999998753
No 96
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=98.71 E-value=1.1e-08 Score=78.97 Aligned_cols=59 Identities=31% Similarity=0.513 Sum_probs=54.8
Q ss_pred CcceecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 81 ~~~~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
...+++++|++ ++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|++++.
T Consensus 96 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~ 154 (180)
T 3sl7_A 96 YGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA 154 (180)
T ss_dssp TTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred ccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence 45689999998 789999999999999999999999999999999999999999999863
No 97
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.71 E-value=4.3e-08 Score=80.50 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=56.9
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEEhHHHHHHHHHhH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDAD--GKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--g~~vGiIt~~dll~~~~~~~ 237 (245)
...++++|.++++++.+++++.+|.++|.+.+++.+||||++ ++++|+||++||++++....
T Consensus 12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~ 75 (250)
T 2d4z_A 12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI 75 (250)
T ss_dssp SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999999963 68999999999999877654
No 98
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.70 E-value=3.8e-08 Score=73.17 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=55.1
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC--cEEEEEEhHHHHHHHHH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADG--KLVGIITRGNVVRAALQ 235 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g--~~vGiIt~~dll~~~~~ 235 (245)
..+++++|.+++.++.+++++.+++++|.+.+.+.+||+|++| +++|+||.+|+++.+.+
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~ 65 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999877 99999999999998754
No 99
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.70 E-value=6e-08 Score=73.72 Aligned_cols=61 Identities=33% Similarity=0.476 Sum_probs=55.6
Q ss_pred hccCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 173 ~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
.....+++++|.+ ++++.+++++.+|+++|.+.+.+++||+|++|+++|+||.+|+++.+.
T Consensus 13 ~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 73 (159)
T 3fv6_A 13 KLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI 73 (159)
T ss_dssp HHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT
T ss_pred HHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh
Confidence 3456799999997 669999999999999999999999999998899999999999999873
No 100
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.70 E-value=3.6e-08 Score=72.79 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=55.2
Q ss_pred cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHH-HHHHH
Q 025984 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNV-VRAAL 234 (245)
Q Consensus 175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dl-l~~~~ 234 (245)
...+++++|.+++.++.+++++.+++++|.+.+.+++||+|++|+++|+||.+|+ ++.+.
T Consensus 6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 66 (138)
T 2p9m_A 6 KNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR 66 (138)
T ss_dssp TTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred ccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 3678999999889999999999999999999999999999988999999999999 87654
No 101
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=98.69 E-value=2.2e-08 Score=76.05 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=55.8
Q ss_pred cCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 175 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 175 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
...++.++|.+ ++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+||..||++.+.
T Consensus 12 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~ 73 (159)
T 1yav_A 12 LEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF 73 (159)
T ss_dssp TTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred hHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhh
Confidence 46789999988 8999999999999999999999999999998899999999999998764
No 102
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.68 E-value=5.3e-08 Score=71.46 Aligned_cols=59 Identities=31% Similarity=0.454 Sum_probs=54.9
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
+.+++++|.+++.++.+++++.+|++.|.+.+.+++||+| +|+++|+||.+|+++.+..
T Consensus 3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~ 61 (133)
T 2ef7_A 3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGK 61 (133)
T ss_dssp CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHT
T ss_pred cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhc
Confidence 5689999999899999999999999999999999999999 8999999999999987654
No 103
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.67 E-value=3.8e-08 Score=71.35 Aligned_cols=57 Identities=32% Similarity=0.353 Sum_probs=52.5
Q ss_pred cccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 178 MVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 178 ~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
+++++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||.+|+++.+.+
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~ 58 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE 58 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhc
Confidence 46788998899999999999999999999999999999 8999999999999987654
No 104
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=98.66 E-value=2.4e-08 Score=73.35 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=75.7
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccc--ccc---cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSAL--RRS---SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
.++++..+.++.++...+.+... .++.. .+. -....+...............+++++|.+ ++.++++++++.
T Consensus 17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~ 94 (133)
T 1y5h_A 17 GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQ 94 (133)
T ss_dssp TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHH
T ss_pred CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcC--CCEEECCCCCHH
Confidence 35667788899999998876544 33332 221 11111111000001122346789999988 799999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
++++.|.+++.+.+||+|+ |+++|+|+..|++++
T Consensus 95 ~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~ 128 (133)
T 1y5h_A 95 EMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH 128 (133)
T ss_dssp HHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence 9999999999999999998 899999999999875
No 105
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=98.66 E-value=3.7e-08 Score=76.77 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=77.2
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
.++++..+.++.++...+.+... .++... +.. +...+...............+++++|.+ ++.++.+++++.
T Consensus 18 ~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~ 95 (184)
T 1pvm_A 18 NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVK 95 (184)
T ss_dssp TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHH
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHH
Confidence 46677889999999999876554 333332 211 1111111100000112346689999998 799999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
++++.|.+++.+.+||+|++|+++|+|+..|++++
T Consensus 96 ~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~ 130 (184)
T 1pvm_A 96 DVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 130 (184)
T ss_dssp HHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred HHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence 99999999999999999988999999999999975
No 106
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=98.66 E-value=3.5e-08 Score=74.41 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=75.9
Q ss_pred cccccccCCCCchhhhhhhhccCC-cccccc--cc---cccccccccccCCCCCCCCcceeccccc------CCCceeEE
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALR--RS---SAVFASGTLTANSAAPSSGVYTVGDFMT------TKEELHVV 98 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~v~~im~------~~~~~~~v 98 (245)
..+.++..+.++.++...+.+... .++... +. -+...+...............++.++|. + ++.++
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~--~~~~v 106 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKC 106 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSCCCTTSBGGGGGGTCCHHHH--TCSEE
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhhhhhcchHHHHHhhhhcccC--CCeEE
Confidence 346677888999999999876554 333322 21 1111111110000000123568999996 4 68999
Q ss_pred CCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 99 ~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
.+++++.++++.|.+++.+.+||+|++|+++|+|+..|++++
T Consensus 107 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~ 148 (152)
T 2uv4_A 107 YLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQA 148 (152)
T ss_dssp CTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHH
Confidence 999999999999999999999999988999999999999875
No 107
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.65 E-value=2e-08 Score=75.42 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=55.4
Q ss_pred cCCccccccc--CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 175 NGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 175 ~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
...+++++|. .+++++.+++++.+|++.|.+.+.+++||+|++|+++|+||.+||++.+.
T Consensus 13 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 74 (150)
T 3lqn_A 13 QQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGIL 74 (150)
T ss_dssp HHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTB
T ss_pred hcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 4678999998 45899999999999999999999999999998999999999999998874
No 108
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=98.64 E-value=4.5e-08 Score=73.97 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=55.0
Q ss_pred cCCcccccccC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 175 NGKMVGDLMTP--APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 175 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
...+++++|.+ +++++.+++++.+|++.|.+.+.+++||+|++|+++|+||..|+++.+.
T Consensus 9 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 70 (157)
T 2emq_A 9 MQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAIL 70 (157)
T ss_dssp -CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSB
T ss_pred hhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence 46789999986 7899999999999999999999999999998899999999999998764
No 109
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=98.63 E-value=5.9e-08 Score=73.75 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=55.9
Q ss_pred cCCcccccccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC--CCcEEEEEEhHHHHHHHHH
Q 025984 175 NGKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDA--DGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 175 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~g~~vGiIt~~dll~~~~~ 235 (245)
...+++++|.+++.++.+++++.+|+++|.+.+.+++||+|+ +|+++|+||..|+++.+..
T Consensus 11 ~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~ 73 (164)
T 2pfi_A 11 HHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA 73 (164)
T ss_dssp CSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred cCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence 467899999999999999999999999999999999999996 6899999999999988753
No 110
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=98.62 E-value=9.5e-08 Score=70.88 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=54.3
Q ss_pred CCcccc---cccCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHH
Q 025984 176 GKMVGD---LMTPAPVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 176 ~~~v~~---~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~ 235 (245)
+.++.+ +|.++++++.+++++.+|++.|.+.+.+.+||+|++|+++|+||..|+++.+..
T Consensus 7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence 456777 788889999999999999999999999999999988999999999999987654
No 111
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=98.62 E-value=4.8e-08 Score=74.75 Aligned_cols=63 Identities=30% Similarity=0.380 Sum_probs=57.4
Q ss_pred ccCCcccccccC---CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHHHHHHHh
Q 025984 174 TNGKMVGDLMTP---APVVVRETTNLEDAARLLLETKYRRLPVVDADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 174 ~~~~~v~~~m~~---~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll~~~~~~ 236 (245)
....+++++|.+ ++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+||.+||++.+...
T Consensus 21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc
Confidence 346789999985 689999999999999999999999999999889999999999999988764
No 112
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.61 E-value=1.8e-07 Score=72.41 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=56.4
Q ss_pred hccCCccccccc--CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHHHHHHHH
Q 025984 173 KTNGKMVGDLMT--PAPVVVRETTNLEDAARLLLETKYRRLPVVDAD-GKLVGIITRGNVVRAALQ 235 (245)
Q Consensus 173 ~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-g~~vGiIt~~dll~~~~~ 235 (245)
.....+++++|+ .+++++.+++++.+++++|.+.++..+||+|++ |+++|+||.+||++++..
T Consensus 32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~ 97 (173)
T 3ocm_A 32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLIT 97 (173)
T ss_dssp HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHH
T ss_pred ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhc
Confidence 346789999996 368899999999999999999999999999976 899999999999998754
No 113
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=98.61 E-value=3.2e-07 Score=82.80 Aligned_cols=103 Identities=19% Similarity=0.170 Sum_probs=78.8
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc---cc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR---SS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 103 (245)
+..++..+.++.++...+.++.. .++...+ .. ++..+... ......+++++|++ .++++++++++
T Consensus 122 d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------~~~~~~~V~~vM~~-~~~vtv~~~~~ 194 (511)
T 3usb_A 122 DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------IQDYSIKISDVMTK-EQLITAPVGTT 194 (511)
T ss_dssp SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------CCCSSSBHHHHCCC-CCCCCEETTCC
T ss_pred CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------hccCCCcHHHhccc-CCCEEECCCCC
Confidence 45677889999999999887765 4444432 11 11111111 12346789999995 35899999999
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+.+++++|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus 195 l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~ 232 (511)
T 3usb_A 195 LSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232 (511)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhh
Confidence 99999999999999999999999999999999999863
No 114
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=98.60 E-value=1e-08 Score=92.54 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccccc--------cccccccccccCCCCCCCCcceecccccCCCceeEECCCC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRRS--------SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTT 102 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~ 102 (245)
++.++..+.++.++...+.++.. .++...+. -++..+.... ......+++++|++..+++++++++
T Consensus 106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-----~~~~~~~V~diM~~~~~~~tv~~~~ 180 (503)
T 1me8_A 106 SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-----LTQTETKVSDMMTPFSKLVTAHQDT 180 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-----hccccCcHHHHhCCCCCCEEEcCCC
Confidence 45667778888888888776654 44433221 1111111100 1224568999999822399999999
Q ss_pred CHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 103 ~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
++.+++++|.+++++.+||+|++|+++|+||.+|+++.
T Consensus 181 sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~ 218 (503)
T 1me8_A 181 KLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRS 218 (503)
T ss_dssp --------------------------------------
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHh
Confidence 99999999999999999999999999999999999975
No 115
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.53 E-value=2e-07 Score=70.52 Aligned_cols=58 Identities=31% Similarity=0.401 Sum_probs=54.1
Q ss_pred CCcccccccCCceEecCCCCHHHHHHHHHHcCCCE-EEEEcCCCcEEEEEEhHHHHHHHH
Q 025984 176 GKMVGDLMTPAPVVVRETTNLEDAARLLLETKYRR-LPVVDADGKLVGIITRGNVVRAAL 234 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~-l~Vvd~~g~~vGiIt~~dll~~~~ 234 (245)
..+++++|.++++++.+++++.+|+++|.+.+.+. +||+|++ +++|+||..||++.+.
T Consensus 15 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~ 73 (157)
T 1o50_A 15 VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSG 73 (157)
T ss_dssp HHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHH
T ss_pred cccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHh
Confidence 56789999999999999999999999999999999 9999977 9999999999998865
No 116
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=98.50 E-value=1.8e-07 Score=72.45 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=56.1
Q ss_pred cCCcccccccCC----ceEe--cCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHHHHHHHHh
Q 025984 175 NGKMVGDLMTPA----PVVV--RETTNLEDAARLLLETKYRRLPVV--DADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 175 ~~~~v~~~m~~~----~~~v--~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~vGiIt~~dll~~~~~~ 236 (245)
...+++++|.+. ++++ .+++++.+|+++|.+.+.+.+||+ |++|+++|+||..|+++.+...
T Consensus 9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~ 78 (185)
T 2j9l_A 9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENA 78 (185)
T ss_dssp CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence 467899999886 7888 999999999999999999999999 7789999999999999987653
No 117
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=98.50 E-value=1.6e-07 Score=78.65 Aligned_cols=105 Identities=13% Similarity=0.141 Sum_probs=76.4
Q ss_pred ccccccCCCCchhhhhhhhccC-----C-cccccc-cccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSS-----D-RVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~-----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+.++..+.++.++...+.++. . .+++.. +..+...-....+. ......+++++|.+ +++++++++++
T Consensus 146 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll---~~~~~~~v~~im~~--~~~~v~~~~~l 220 (286)
T 2oux_A 146 EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLI---VNDDDTLIADILNE--RVISVHVGDDQ 220 (286)
T ss_dssp CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHT---TSCTTSBHHHHSBS--CCCCEETTSBH
T ss_pred CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHH---cCCCCCcHHHHcCC--CCeeecCCCCH
Confidence 5677888999999999987762 1 222222 11111100000001 11246689999988 79999999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
.++++.|.+++.+.+||+|++|+++|+||..|++...
T Consensus 221 ~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i 257 (286)
T 2oux_A 221 EDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI 257 (286)
T ss_dssp HHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 9999999999999999999999999999999999763
No 118
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=98.38 E-value=4e-07 Score=75.73 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=75.5
Q ss_pred ccccccCCCCchhhhhhhhccC------Ccccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSS------DRVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP 100 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~ 100 (245)
.+.++..+.++.++...+..+. ..+++.. +.. .+..+... .....+++++|.+ +++++++
T Consensus 144 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~-------~~~~~~v~~im~~--~~~~v~~ 214 (278)
T 2yvy_A 144 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV-------ADPRTRVAEIMNP--KVVYVRT 214 (278)
T ss_dssp CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHH-------SCTTCBSTTTSBS--SCCCEET
T ss_pred CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhc-------CCCCCcHHHHhCC--CCeEEeC
Confidence 5677888999999999887652 2222221 111 11111100 1245689999987 7999999
Q ss_pred CCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 101 ~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
++++.++++.|.+++.+.+||+|++|+++|+||..|++...
T Consensus 215 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i 255 (278)
T 2yvy_A 215 DTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 255 (278)
T ss_dssp TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred CCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence 99999999999999999999999999999999999999763
No 119
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=98.36 E-value=6.1e-07 Score=81.38 Aligned_cols=61 Identities=25% Similarity=0.550 Sum_probs=57.0
Q ss_pred CCcccccccCCceEecCC-CCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHHHHHHHHh
Q 025984 176 GKMVGDLMTPAPVVVRET-TNLEDAARLLLETKYRRLPVVD-ADGKLVGIITRGNVVRAALQI 236 (245)
Q Consensus 176 ~~~v~~~m~~~~~~v~~~-~~l~~~~~~~~~~~~~~l~Vvd-~~g~~vGiIt~~dll~~~~~~ 236 (245)
..++.++|.++++++.++ +++.+++++|.+.+++++||+| ++|+++|+||.+||++.+...
T Consensus 383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~ 445 (527)
T 3pc3_A 383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM 445 (527)
T ss_dssp TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH
T ss_pred CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc
Confidence 578999999999999999 9999999999999999999999 789999999999999988753
No 120
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=98.31 E-value=1.2e-06 Score=81.17 Aligned_cols=54 Identities=20% Similarity=0.050 Sum_probs=49.4
Q ss_pred eecccccCCCceeEECCCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 84 ~v~~im~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
+++++|++ ++.++++++++.++.+.|.+++.+.+||+ ++|+++|+||.+|+.++
T Consensus 569 ~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~ 622 (632)
T 3org_A 569 SLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYG 622 (632)
T ss_dssp --CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEEC
T ss_pred ccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHH
Confidence 38899998 89999999999999999999999999999 67999999999999875
No 121
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=98.26 E-value=7e-07 Score=80.16 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=0.0
Q ss_pred cccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
..++..+.++.++...+.++.. .++...+.. ++..+.. .......+++++|+++++++++++++++.++
T Consensus 98 ~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~------~~~~~~~~V~~vMtp~~~~vtv~~~~~l~ea 171 (490)
T 4avf_A 98 PVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR------VKPNAGDTVAAIMTPKDKLVTAREGTPLEEM 171 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh------hccccCCcHHHHhccCCCCEEECCCCcHHHH
Confidence 4466677888888888776654 333322211 1111111 1122456899999943348999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
+++|.+++.+.+||+|++|+++|+||.+|++++
T Consensus 172 ~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~ 204 (490)
T 4avf_A 172 KAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA 204 (490)
T ss_dssp ---------------------------------
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhh
Confidence 999999999999999999999999999999976
No 122
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=98.19 E-value=1.8e-06 Score=77.20 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=76.1
Q ss_pred ccccccCCCCchhhhhhhhccC------Ccccccc--ccc---ccccccccccCCCCCCCCcceecccccCCCceeEECC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSS------DRVSALR--RSS---AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP 100 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~ 100 (245)
.+.++..+.+..++...+.++. ..++... +.. .+..+... .....+++++|++ ++.++++
T Consensus 164 ~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~-------~~~~~~v~dim~~--~~~~v~~ 234 (473)
T 2zy9_A 164 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV-------ADPRTRVAEIMNP--KVVYVRT 234 (473)
T ss_dssp CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHH-------SCTTSBGGGTSBS--SCCCEES
T ss_pred CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhc-------CCCCCcHHHHhCC--CCeEEeC
Confidence 5677888999999999987652 1222221 111 11111100 1145689999987 7999999
Q ss_pred CCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 101 ~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
++++.++++.|.+++.+.+||+|++|+++|+||.+|+....
T Consensus 235 ~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i 275 (473)
T 2zy9_A 235 DTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 275 (473)
T ss_dssp SSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred CCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHH
Confidence 99999999999999999999999999999999999998753
No 123
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=98.16 E-value=4.3e-07 Score=81.63 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=68.0
Q ss_pred cccccccCCCCchhhhhhhhccCC-cccccccc-c----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCH
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRS-S----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTV 104 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v 104 (245)
.+..++..+.++.++...+.++.. .++...+. . ....+.. .......++.++|+++++++++++++++
T Consensus 97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~------~~~~~~~~v~diM~p~~~~vtv~~~~~l 170 (496)
T 4fxs_A 97 THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR------FVTDLTKSVAAVMTPKERLATVKEGATG 170 (496)
T ss_dssp BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT------TCCCTTSBGGGTSEEGGGCCEEECC---
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh------hcccCCCcHHHHhcCCCCCEEECCCCCH
Confidence 445677889999999999987765 44443321 1 1111111 1122466899999943348999999999
Q ss_pred HHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 105 DEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 105 ~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
.+++++|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus 171 ~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 171 AEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp -CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence 9999999999999999999999999999999999753
No 124
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.05 E-value=1.6e-06 Score=77.86 Aligned_cols=100 Identities=25% Similarity=0.293 Sum_probs=0.0
Q ss_pred cccccccCCCCchhhhhhhhccCC-ccccccccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 31 LQLPCLLLSRPGCRVFSVLATSSD-RVSALRRSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 31 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
.++.++..+.++.++...+.++.. .++...+.. .+..+. . . -...++.++|++ ++.++++++++.
T Consensus 101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl----~--~--~~~~~v~~im~~--~~~~v~~~~~l~ 170 (486)
T 2cu0_A 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDI----A--A--REGKLVKELMTK--EVITVPESIEVE 170 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHh----c--c--CCCCCHHHHccC--CCeEECCcCcHH
Confidence 345566667777777777665543 333322110 011110 0 0 135688999997 789999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
++++.|.+++.+.+||+|++|+++|+||.+|+++.
T Consensus 171 eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~ 205 (486)
T 2cu0_A 171 EALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR 205 (486)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence 99999999999999999999999999999999975
No 125
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=97.99 E-value=8.3e-07 Score=79.15 Aligned_cols=97 Identities=24% Similarity=0.217 Sum_probs=0.0
Q ss_pred cccCCCCchhhhhhhhccCC-ccccccc----c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 35 CLLLSRPGCRVFSVLATSSD-RVSALRR----S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 35 ~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
++.++.++.++...+.++.. .++.-.+ . -....+. . ..-...+|+++|++ ++++++.+.++.
T Consensus 150 tl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~----r---f~d~~~~V~evMT~--~lvt~~~~~~le 220 (556)
T 4af0_A 150 CLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV----Q---FQDAETPIKSVMTT--EVVTGSSPITLE 220 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccc----c---ccccceEhhhhccc--ceEEecCCCCHH
Confidence 45667777777777776664 3332211 0 1111111 1 01235689999998 899999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
+|.++|.++++..+||||++|+++|+||.+|+.+.
T Consensus 221 eA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 221 KANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN 255 (556)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence 99999999999999999999999999999999875
No 126
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=97.98 E-value=4.7e-06 Score=75.28 Aligned_cols=109 Identities=21% Similarity=0.156 Sum_probs=48.5
Q ss_pred cccccCCCCchhhhhhhhccCC-ccccccc----ccccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHHHH
Q 025984 33 LPCLLLSRPGCRVFSVLATSSD-RVSALRR----SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107 (245)
Q Consensus 33 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~~~ 107 (245)
..++..+.++.++...+.++.. .++...+ ..+...-....+..........++.++|++..+++++++++++.++
T Consensus 118 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~~tv~~~~~l~ea 197 (514)
T 1jcn_A 118 PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAPAGVTLKEA 197 (514)
T ss_dssp CCCCCC-----------------CEESCC--------CCEECTTTTC----------------CCBCCCCEETTCCSTTT
T ss_pred CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCCeEECCCCCHHHH
Confidence 4456667777788877765554 2332211 1111000000001000012456899999863358999999999999
Q ss_pred HHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 108 ~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
.++|.+++...+||+|++|+++|+|+..|+++..
T Consensus 198 ~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 198 NEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp TTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred HHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 9999999999999999999999999999998753
No 127
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=97.97 E-value=6.6e-06 Score=73.98 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=3.9
Q ss_pred ccccccCCCCchhhhhhhhccCC-ccccccc-c----cccccccccccCCCCCCCCcceecccccCCCceeEECCCCCHH
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALRR-S----SAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVD 105 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~v~ 105 (245)
.++++..+.++.++...+.++.. .++...+ . -+...+... ......++.++|++..++.++++++++.
T Consensus 104 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~------~~~~~~~v~~im~~~~~~~~v~~~~~l~ 177 (494)
T 1vrd_A 104 DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF------EKNLSKKIKDLMTPREKLIVAPPDISLE 177 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh------hcCCCCcHHHHhCCCCCCeEECCCCCHH
Confidence 34556667777777777765543 2222211 1 111111110 0113468999998533589999999999
Q ss_pred HHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhh
Q 025984 106 EALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (245)
Q Consensus 106 ~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~ 141 (245)
+++++|.+++...+||+|++|+++|+|+.+|+++..
T Consensus 178 ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 213 (494)
T 1vrd_A 178 KAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213 (494)
T ss_dssp -------------------------------CHHHH
T ss_pred HHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence 999999999999999999999999999999999864
No 128
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=97.90 E-value=2.1e-05 Score=70.64 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=74.4
Q ss_pred ccccccCCCCchhhhhhhhccCC-cccccc---ccc----ccccccccccCCCCCCCCcceecccccCCCceeEECCCCC
Q 025984 32 QLPCLLLSRPGCRVFSVLATSSD-RVSALR---RSS----AVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTT 103 (245)
Q Consensus 32 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 103 (245)
.+.++..+.++.++...+.++.. .++... +.. .+..+.... .....+++++|++. ++.+++++++
T Consensus 99 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~------~~~~~~v~~im~~~-~~~~v~~~~~ 171 (491)
T 1zfj_A 99 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI------SDYNAPISEHMTSE-HLVTAAVGTD 171 (491)
T ss_dssp SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC------SCSSSBTTTSCCCS-CCCCEETTCC
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh------ccCCCcHHHHcCCC-CCEEECCCCC
Confidence 45566777888888888876654 333322 110 111111000 01356899999841 4788999999
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhhhhhc
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~~~~~ 142 (245)
+.++++.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus 172 l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 172 LETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp HHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence 999999999999999999999999999999999998653
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=60.22 E-value=21 Score=23.10 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHcCCCEEEE
Q 025984 195 NLEDAARLLLETKYRRLPV 213 (245)
Q Consensus 195 ~l~~~~~~~~~~~~~~l~V 213 (245)
++.+|+++..+.+++-+-|
T Consensus 30 ~~~eAl~~A~e~~LDLVev 48 (78)
T 1tif_A 30 SKQEALEIAARRNLDLVLV 48 (78)
T ss_dssp EHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHcCCCEEEE
Confidence 4556666666666544433
No 130
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=53.29 E-value=27 Score=21.06 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEcCC-CcEEEEEeh
Q 025984 100 PTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSD 134 (245)
Q Consensus 100 ~~~~v~~~~~~~~~~~~~~~~Vvd~~-g~~~Giv~~ 134 (245)
+-++++||+..|...++..+...|.+ |+ +.+|.+
T Consensus 11 kpmsveEAv~qmel~gh~F~vF~n~~t~~-~nVvYr 45 (57)
T 3k2t_A 11 KPMDSEEAVLQMNLLGHSFYVYTDAETNG-TNIVYS 45 (57)
T ss_dssp CCBCHHHHHHHHHHHTCSEEEEEBSSSCC-EEEEEE
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEcCCCCC-EEEEEE
Confidence 56899999999999999999999865 44 455544
No 131
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=51.79 E-value=33 Score=21.29 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehh
Q 025984 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135 (245)
Q Consensus 100 ~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~ 135 (245)
+-++++||+..|...++..+...|.+..-+.+|.++
T Consensus 11 kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR 46 (65)
T 3ka5_A 11 KPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKR 46 (65)
T ss_dssp SCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEC
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEe
Confidence 468999999999999999999998763345666554
No 132
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=47.46 E-value=25 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCceeEEEcCCCcEEEEEehhhhhhh
Q 025984 115 RITGFPVIDDDWKLVGLVSDYDLLAL 140 (245)
Q Consensus 115 ~~~~~~Vvd~~g~~~Giv~~~dl~~~ 140 (245)
+...+-+++++|..+|+++..+.+..
T Consensus 12 r~~eVrli~~~Ge~lGv~~~~eAl~~ 37 (78)
T 1tif_A 12 RAREVRLIDQNGDQLGIKSKQEALEI 37 (78)
T ss_dssp CCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred CCCEEEEECCCCcCCCcccHHHHHHH
Confidence 45668899999999999999998865
No 133
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=44.49 E-value=10 Score=28.01 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHHH
Q 025984 196 LEDAARLLLETKYRRLPVVDADGKLVGIITRGNVV 230 (245)
Q Consensus 196 l~~~~~~~~~~~~~~l~Vvd~~g~~vGiIt~~dll 230 (245)
+.+..+.+.+.|...+.|.. +|+++|+|...|.+
T Consensus 121 ~~~~~~~la~~G~T~v~VA~-d~~l~GvIalaD~i 154 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVE-GSRVLGVIALKDIV 154 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEE-TTEEEEEEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEEE-CCEEEEEEEEecCC
Confidence 67777888888887777766 68999999998854
No 134
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=43.70 E-value=34 Score=21.30 Aligned_cols=36 Identities=14% Similarity=-0.036 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhcCCceeEEEcCCCcEEEEEehh
Q 025984 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135 (245)
Q Consensus 100 ~~~~v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~ 135 (245)
+-++++||+..|...++..+...|.+..-+.+|.++
T Consensus 12 kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR 47 (66)
T 3lyv_A 12 KPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRR 47 (66)
T ss_dssp CEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEEC
T ss_pred CCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEE
Confidence 457899999999999999999998652234555443
No 135
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=37.69 E-value=23 Score=25.20 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEcCCCcEEEEEEhHHHHHHHHHhH
Q 025984 210 RLPVVDADGKLVGIITRGNVVRAALQIK 237 (245)
Q Consensus 210 ~l~Vvd~~g~~vGiIt~~dll~~~~~~~ 237 (245)
..||.+++|+++|+|+..-.+..+....
T Consensus 110 ~~PV~~~~g~viGvv~vg~~~~~~~~~~ 137 (142)
T 3by8_A 110 FTPIYDENHKQIGVVAIGLELSRVTQQI 137 (142)
T ss_dssp EEEEECTTSCEEEEEEEEEEHHHHHHHH
T ss_pred EEeEEcCCCCEEEEEEEeEEHHHHHHHH
Confidence 3589876799999998776666555443
No 136
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=35.26 E-value=22 Score=27.67 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=17.3
Q ss_pred CCCEEEEEcCCCcEEEEEEhHHH
Q 025984 207 KYRRLPVVDADGKLVGIITRGNV 229 (245)
Q Consensus 207 ~~~~l~Vvd~~g~~vGiIt~~dl 229 (245)
|-+--||+|.+|+++||-+.+|=
T Consensus 125 GdSGsPVvn~dG~VIGVHt~s~~ 147 (213)
T 3fan_A 125 GDSGSPVITEAGELVGVHTGSNK 147 (213)
T ss_dssp CSTTCEEEETTSCEEEEEEC---
T ss_pred CCCCCccCCCCCcEEEEEeccCC
Confidence 55566999999999999998763
No 137
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=34.68 E-value=37 Score=23.81 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCEEEEEcCCCcEEEE-EEhHHHHHHHHHhHHHh
Q 025984 198 DAARLLLETKYRRLPVVDADGKLVGI-ITRGNVVRAALQIKHAT 240 (245)
Q Consensus 198 ~~~~~~~~~~~~~l~Vvd~~g~~vGi-It~~dll~~~~~~~~~~ 240 (245)
++.+.+.-.+...+.++|.+|++++. ++..++.+.+.+.....
T Consensus 100 ~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~l~~~l~~l~~~~ 143 (152)
T 2lrn_A 100 DVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGA 143 (152)
T ss_dssp HHHHHTTCCSSCEEEEECTTSEEEEECCCTTHHHHHHHHHHTSS
T ss_pred HHHHHhCCCcCCeEEEECCCCeEEEeeCCHHHHHHHHHHHHhhc
Confidence 34444444456677889999999888 67777777776655433
No 138
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=33.07 E-value=34 Score=23.81 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=18.2
Q ss_pred CHHHHHHHHH-hcCCceeEEEcCCCcE
Q 025984 103 TVDEALEILV-EKRITGFPVIDDDWKL 128 (245)
Q Consensus 103 ~v~~~~~~~~-~~~~~~~~Vvd~~g~~ 128 (245)
.+...++.++ ..+...+.|+|.+|..
T Consensus 36 ~l~~~~~~~~~~~~~~~i~v~d~~G~~ 62 (131)
T 1p0z_A 36 RIKALIDPMRSFSDATYITVGDASGQR 62 (131)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEETTSBE
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCcE
Confidence 3555555555 4688899999988864
No 139
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=29.34 E-value=26 Score=24.56 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEE----EEhHHHHHHHHHhHHHhhh
Q 025984 194 TNLEDAARLLLETKYRRLPVVDADGKLVGI----ITRGNVVRAALQIKHATEM 242 (245)
Q Consensus 194 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~vGi----It~~dll~~~~~~~~~~~~ 242 (245)
..-.++.+.+.-.+...+.++|.+|++++. .+..++.+.+.+......+
T Consensus 96 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 96 DRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp CCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred cchHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence 345555555555567777899989976655 5667777777766554433
No 140
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=28.39 E-value=36 Score=25.12 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=17.5
Q ss_pred HcCCCEEEEEcCCCcEEEEEEh
Q 025984 205 ETKYRRLPVVDADGKLVGIITR 226 (245)
Q Consensus 205 ~~~~~~l~Vvd~~g~~vGiIt~ 226 (245)
..|.+--|++|.+|+++||.+.
T Consensus 123 ~pGnSGGPl~n~~G~VVGI~~~ 144 (163)
T 2w5e_A 123 QDGMSGAPVCDKYCRVLAVHQT 144 (163)
T ss_dssp SSCCTTCEEECTTSCEEEEEEE
T ss_pred CCCCchhhEEcCCCEEEEEEcc
Confidence 4455667999999999999874
No 141
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=28.14 E-value=1.3e+02 Score=21.24 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCEEEEEcCCCcEEEEEEh
Q 025984 208 YRRLPVVDADGKLVGIITR 226 (245)
Q Consensus 208 ~~~l~Vvd~~g~~vGiIt~ 226 (245)
.....++|.+|+++....-
T Consensus 111 ~P~~~lid~~G~i~~~~~g 129 (161)
T 3drn_A 111 ARITFVIDKKGIIRHIYNS 129 (161)
T ss_dssp CCEEEEECTTSBEEEEEEC
T ss_pred cceEEEECCCCEEEEEEec
Confidence 6678899999998887654
No 142
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=28.12 E-value=55 Score=23.93 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcEEEEEehhhhh
Q 025984 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (245)
Q Consensus 104 v~~~~~~~~~~~~~~~~Vvd~~g~~~Giv~~~dl~ 138 (245)
+.+..+.+...+...+.|.. +|+++|+|...|-+
T Consensus 121 ~~~~~~~la~~G~T~v~VA~-d~~l~GvIalaD~i 154 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVE-GSRVLGVIALKDIV 154 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEE-TTEEEEEEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEEE-CCEEEEEEEEecCC
Confidence 67777788888877777775 57999999998865
No 143
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=27.39 E-value=34 Score=24.56 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=16.5
Q ss_pred ceeEEEcCCCcEEEEE-ehhhhhh
Q 025984 117 TGFPVIDDDWKLVGLV-SDYDLLA 139 (245)
Q Consensus 117 ~~~~Vvd~~g~~~Giv-~~~dl~~ 139 (245)
++.||.|++|+++|+| ...|+-.
T Consensus 109 ~~~Pi~d~~G~~~G~vev~~Dit~ 132 (151)
T 2qkp_A 109 TYAAVRDQAGDFQGVLEYVQDIKP 132 (151)
T ss_dssp EEEEEECTTCCEEEEEEEEEECGG
T ss_pred EEEEEECCCCCEEEEEEEEEECHH
Confidence 3678888889999988 3445543
No 144
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=26.94 E-value=37 Score=26.42 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=15.9
Q ss_pred CCCEEEEEcCCCcEEEEEEhH
Q 025984 207 KYRRLPVVDADGKLVGIITRG 227 (245)
Q Consensus 207 ~~~~l~Vvd~~g~~vGiIt~~ 227 (245)
|-+-=|++|.+|+++||++..
T Consensus 187 G~SGGPLv~~~G~vVGI~s~~ 207 (231)
T 3tjo_A 187 GNAGGPLVNLDGEVIGINTLK 207 (231)
T ss_dssp TTTTSEEECTTSCEEEEEEEE
T ss_pred CCchhHeecCCCeEEEEEeEE
Confidence 333448998889999998863
No 145
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=25.97 E-value=35 Score=26.63 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=15.8
Q ss_pred CCCEEEEEcCCCcEEEEEEh
Q 025984 207 KYRRLPVVDADGKLVGIITR 226 (245)
Q Consensus 207 ~~~~l~Vvd~~g~~vGiIt~ 226 (245)
|-+-=|++|.+|+++||++.
T Consensus 174 G~SGGPlv~~~G~vvGI~s~ 193 (237)
T 3lgi_A 174 GNSGGALVNSLGELMGINTL 193 (237)
T ss_dssp TCTTCEEECTTCCEEEEECC
T ss_pred CCchHHeeCCCCeEEEEEee
Confidence 44455899888999999876
No 146
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=24.05 E-value=1.1e+02 Score=21.11 Aligned_cols=51 Identities=6% Similarity=-0.132 Sum_probs=32.8
Q ss_pred eEecCCCCHHHHHHHHH--HcCCCEEEEEcCCCcEEE----EEEhHHHHHHHHHhHH
Q 025984 188 VVVRETTNLEDAARLLL--ETKYRRLPVVDADGKLVG----IITRGNVVRAALQIKH 238 (245)
Q Consensus 188 ~~v~~~~~l~~~~~~~~--~~~~~~l~Vvd~~g~~vG----iIt~~dll~~~~~~~~ 238 (245)
.....+....++...+. -.++....++|.+|+++. ..+..++.+.+.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~ 140 (151)
T 3raz_A 84 IWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHS 140 (151)
T ss_dssp EEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHT
T ss_pred eEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 33445555666666655 456677889998897655 4677777776665543
No 147
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=24.02 E-value=44 Score=26.38 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.9
Q ss_pred CCCEEEEEcCCCcEEEEEEh
Q 025984 207 KYRRLPVVDADGKLVGIITR 226 (245)
Q Consensus 207 ~~~~l~Vvd~~g~~vGiIt~ 226 (245)
|-+-=|++|.+|+++||.+.
T Consensus 185 G~SGGPLvn~~G~vVGI~s~ 204 (245)
T 3sti_A 185 GNSGGALLNLNGELIGINTA 204 (245)
T ss_dssp TTTTSEEECTTSCEEEEEEC
T ss_pred CcchhHeecCCCeEEEEEEe
Confidence 44455899988999999875
No 148
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=23.01 E-value=48 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=16.3
Q ss_pred CCCEEEEEcCCCcEEEEEEhH
Q 025984 207 KYRRLPVVDADGKLVGIITRG 227 (245)
Q Consensus 207 ~~~~l~Vvd~~g~~vGiIt~~ 227 (245)
|-+-=|++|.+|+++||++..
T Consensus 181 GdSGGPLv~~~G~vvGI~s~~ 201 (237)
T 3k6y_A 181 GDSGGPLIDLNGQVLGVVFGA 201 (237)
T ss_dssp TCTTCEEECTTSCEEEEEEEE
T ss_pred CccHHHEECCCCEEEEEEEee
Confidence 444558898789999999863
No 149
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=22.98 E-value=42 Score=25.45 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=15.3
Q ss_pred CCCEEEEEcCCCcEEEEEEh
Q 025984 207 KYRRLPVVDADGKLVGIITR 226 (245)
Q Consensus 207 ~~~~l~Vvd~~g~~vGiIt~ 226 (245)
|-+-=|+++.+|+++||++.
T Consensus 156 GdSGGPlv~~~g~lvGI~s~ 175 (210)
T 2as9_A 156 GNSGSPVLNSNNEVIGVVYG 175 (210)
T ss_dssp TCTTCEEECTTSCEEEEECC
T ss_pred CCccCcEECCCCeEEEEEec
Confidence 44445888877999999985
No 150
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=22.28 E-value=71 Score=21.46 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEcCCCcEE----EEEEhHHHHHHHHHhHHH
Q 025984 195 NLEDAARLLLETKYRRLPVVDADGKLV----GIITRGNVVRAALQIKHA 239 (245)
Q Consensus 195 ~l~~~~~~~~~~~~~~l~Vvd~~g~~v----GiIt~~dll~~~~~~~~~ 239 (245)
.-.++.+.+.-.++..+.++|.+|+++ |..+..++.+.+.+....
T Consensus 74 ~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 74 EGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES 122 (130)
T ss_dssp THHHHHHHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred chHHHHHHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence 345555555556677777888788765 455677777777665443
No 151
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=20.60 E-value=59 Score=24.20 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=15.6
Q ss_pred CCCEEEEEcCCCcEEEEEEhH
Q 025984 207 KYRRLPVVDADGKLVGIITRG 227 (245)
Q Consensus 207 ~~~~l~Vvd~~g~~vGiIt~~ 227 (245)
|-+-=|+++.+|+++||++..
T Consensus 152 GdSGGPl~~~~g~lvGI~s~g 172 (200)
T 2w7s_A 152 GNSGSPVLNSKHELIGILYAG 172 (200)
T ss_dssp TCTTCEEECTTSCEEEEEEEE
T ss_pred CCccCeEECcCCEEEEEEecc
Confidence 444458888778999999864
Done!