Query 025985
Match_columns 245
No_of_seqs 205 out of 621
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 11:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.3 1.9E-11 4.2E-16 88.8 9.3 57 163-220 3-59 (65)
2 KOG4343 bZIP transcription fac 99.2 2.9E-11 6.3E-16 119.1 9.5 58 158-215 274-331 (655)
3 PF00170 bZIP_1: bZIP transcri 99.2 8.2E-11 1.8E-15 85.4 9.1 57 163-220 3-59 (64)
4 PF07716 bZIP_2: Basic region 99.1 3.6E-10 7.7E-15 80.0 8.3 51 163-214 3-53 (54)
5 KOG3584 cAMP response element 99.1 2E-10 4.3E-15 106.5 6.8 58 157-214 283-340 (348)
6 KOG4005 Transcription factor X 98.9 1.3E-08 2.9E-13 92.5 9.7 67 148-215 53-119 (292)
7 KOG0709 CREB/ATF family transc 98.8 3.6E-09 7.7E-14 102.9 5.9 59 157-215 243-301 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.9 7.6E-07 1.7E-11 69.2 -2.6 57 158-214 23-79 (92)
9 KOG0837 Transcriptional activa 97.3 0.0012 2.5E-08 61.2 8.8 57 168-224 209-268 (279)
10 KOG3119 Basic region leucine z 97.3 0.00093 2E-08 61.3 8.1 63 153-215 182-244 (269)
11 KOG4571 Activating transcripti 97.0 0.0037 8.1E-08 58.5 8.8 62 163-224 224-288 (294)
12 KOG3863 bZIP transcription fac 96.0 0.011 2.5E-07 60.0 5.5 48 165-212 490-537 (604)
13 KOG4196 bZIP transcription fac 95.8 0.11 2.3E-06 44.0 9.6 54 160-213 48-101 (135)
14 KOG1414 Transcriptional activa 89.7 0.021 4.6E-07 54.9 -4.5 66 158-224 147-216 (395)
15 PF13863 DUF4200: Domain of un 87.6 9.5 0.00021 30.2 10.2 65 163-229 58-122 (126)
16 PRK00888 ftsB cell division pr 83.0 6.4 0.00014 31.5 7.1 34 181-214 29-62 (105)
17 PF04977 DivIC: Septum formati 81.7 12 0.00026 27.0 7.6 41 182-222 20-62 (80)
18 PF01166 TSC22: TSC-22/dip/bun 81.6 2.6 5.7E-05 31.2 4.0 25 189-213 17-41 (59)
19 PF05812 Herpes_BLRF2: Herpesv 80.3 3.1 6.8E-05 34.6 4.5 27 184-210 1-27 (118)
20 PHA03162 hypothetical protein; 77.3 1.8 3.8E-05 36.8 2.2 28 183-210 10-37 (135)
21 TIGR02894 DNA_bind_RsfA transc 76.0 11 0.00025 32.9 6.9 43 181-224 106-148 (161)
22 PHA03155 hypothetical protein; 75.9 3.7 8E-05 34.1 3.6 25 187-211 9-33 (115)
23 PF12709 Kinetocho_Slk19: Cent 75.4 14 0.00031 29.2 6.7 37 185-222 48-84 (87)
24 PF08172 CASP_C: CASP C termin 74.5 12 0.00025 34.4 7.0 40 184-224 91-130 (248)
25 KOG1414 Transcriptional activa 73.1 0.87 1.9E-05 44.0 -0.7 52 163-214 283-335 (395)
26 PF03980 Nnf1: Nnf1 ; InterPr 72.9 6.4 0.00014 31.0 4.3 32 183-214 77-108 (109)
27 TIGR02209 ftsL_broad cell divi 72.4 36 0.00079 25.1 8.4 43 183-225 28-71 (85)
28 PRK10884 SH3 domain-containing 68.8 37 0.0008 30.4 8.6 29 185-213 124-152 (206)
29 TIGR02449 conserved hypothetic 67.4 26 0.00056 26.3 6.2 33 189-222 10-42 (65)
30 KOG4797 Transcriptional regula 66.5 8.3 0.00018 32.0 3.7 27 182-208 70-96 (123)
31 PF05377 FlaC_arch: Flagella a 66.0 24 0.00052 25.8 5.6 32 190-222 11-42 (55)
32 PF06005 DUF904: Protein of un 65.2 34 0.00073 25.9 6.6 25 189-213 28-52 (72)
33 PF06156 DUF972: Protein of un 64.8 15 0.00032 29.8 4.8 28 187-214 23-50 (107)
34 PF13805 Pil1: Eisosome compon 64.3 26 0.00056 32.9 7.0 36 186-221 165-200 (271)
35 smart00340 HALZ homeobox assoc 64.0 18 0.00039 25.3 4.4 25 190-214 9-33 (44)
36 PF06005 DUF904: Protein of un 63.0 27 0.00059 26.4 5.7 27 188-214 20-46 (72)
37 PRK13169 DNA replication intia 62.8 15 0.00033 30.1 4.6 28 187-214 23-50 (110)
38 PF01486 K-box: K-box region; 61.7 17 0.00037 28.2 4.6 33 178-210 63-99 (100)
39 PF13851 GAS: Growth-arrest sp 61.5 1.1E+02 0.0024 27.0 10.1 52 163-214 70-121 (201)
40 PRK14474 F0F1 ATP synthase sub 60.8 1E+02 0.0022 28.1 10.1 65 158-222 29-93 (250)
41 PF02183 HALZ: Homeobox associ 59.8 27 0.00058 24.2 4.8 25 189-213 15-39 (45)
42 PRK13169 DNA replication intia 59.1 22 0.00047 29.2 4.9 31 183-213 26-56 (110)
43 PF06156 DUF972: Protein of un 57.7 21 0.00046 28.9 4.6 30 185-214 28-57 (107)
44 PF00170 bZIP_1: bZIP transcri 57.5 67 0.0015 22.9 8.7 55 161-215 5-62 (64)
45 KOG2829 E2F-like protein [Tran 57.1 24 0.00052 33.8 5.5 33 159-199 134-166 (326)
46 PF12709 Kinetocho_Slk19: Cent 56.7 52 0.0011 26.1 6.5 34 183-216 39-72 (87)
47 PF05377 FlaC_arch: Flagella a 56.6 34 0.00073 25.0 5.0 27 188-214 2-28 (55)
48 PF15058 Speriolin_N: Sperioli 53.7 23 0.00049 32.0 4.5 26 189-214 8-33 (200)
49 KOG4571 Activating transcripti 53.5 1.3E+02 0.0028 28.8 9.7 63 156-218 222-287 (294)
50 KOG3119 Basic region leucine z 52.5 82 0.0018 29.1 8.1 52 163-214 196-250 (269)
51 PF01166 TSC22: TSC-22/dip/bun 52.3 37 0.0008 25.2 4.7 25 185-209 20-44 (59)
52 TIGR03752 conj_TIGR03752 integ 52.2 27 0.00058 35.3 5.2 8 164-171 72-79 (472)
53 PRK05759 F0F1 ATP synthase sub 52.0 1.3E+02 0.0028 24.6 10.1 65 157-221 27-91 (156)
54 PRK13454 F0F1 ATP synthase sub 50.0 1.7E+02 0.0036 25.2 10.1 53 157-209 54-106 (181)
55 PRK07352 F0F1 ATP synthase sub 49.5 1.6E+02 0.0035 24.9 10.1 64 158-221 43-106 (174)
56 PRK00888 ftsB cell division pr 48.8 38 0.00082 27.1 4.7 17 190-206 45-61 (105)
57 KOG4196 bZIP transcription fac 48.1 68 0.0015 27.4 6.2 34 190-224 85-118 (135)
58 KOG0709 CREB/ATF family transc 48.1 56 0.0012 33.0 6.7 58 157-214 247-314 (472)
59 PHA00728 hypothetical protein 48.1 24 0.00051 30.1 3.5 22 193-214 5-26 (151)
60 PF12999 PRKCSH-like: Glucosid 47.5 1.4E+02 0.0029 26.5 8.3 37 178-214 138-174 (176)
61 PRK14471 F0F1 ATP synthase sub 47.2 1.7E+02 0.0036 24.4 10.1 54 157-210 31-84 (164)
62 PF04999 FtsL: Cell division p 47.1 75 0.0016 24.2 6.0 38 188-225 44-82 (97)
63 PRK14472 F0F1 ATP synthase sub 46.2 1.8E+02 0.004 24.6 10.1 55 157-211 41-95 (175)
64 PF14989 CCDC32: Coiled-coil d 46.1 33 0.00071 29.6 4.2 38 186-223 56-98 (148)
65 CHL00118 atpG ATP synthase CF0 45.9 1.8E+02 0.0038 24.3 10.1 52 157-208 45-96 (156)
66 PRK13461 F0F1 ATP synthase sub 45.8 1.7E+02 0.0038 24.2 10.1 54 157-210 28-81 (159)
67 KOG3335 Predicted coiled-coil 45.7 68 0.0015 28.7 6.1 45 163-213 89-133 (181)
68 PRK13453 F0F1 ATP synthase sub 45.3 1.9E+02 0.0042 24.5 10.1 64 158-221 42-105 (173)
69 KOG4005 Transcription factor X 44.5 2E+02 0.0043 27.2 9.2 62 153-214 61-125 (292)
70 PF07558 Shugoshin_N: Shugoshi 44.3 29 0.00062 24.1 2.9 42 167-209 3-44 (46)
71 PF14197 Cep57_CLD_2: Centroso 44.1 84 0.0018 23.5 5.6 32 168-199 29-60 (69)
72 PF07047 OPA3: Optic atrophy 3 43.7 51 0.0011 27.3 4.9 38 163-206 95-132 (134)
73 PRK09174 F0F1 ATP synthase sub 43.7 2.3E+02 0.0051 25.1 10.1 51 157-207 76-126 (204)
74 PF14931 IFT20: Intraflagellar 43.5 1.9E+02 0.0041 23.9 10.0 59 161-222 55-118 (120)
75 PF04849 HAP1_N: HAP1 N-termin 43.3 48 0.001 31.7 5.2 29 185-213 159-187 (306)
76 PF07334 IFP_35_N: Interferon- 43.2 44 0.00095 25.9 4.1 14 197-210 4-17 (76)
77 PF05103 DivIVA: DivIVA protei 42.6 28 0.00062 27.5 3.1 28 186-213 25-52 (131)
78 TIGR02449 conserved hypothetic 41.6 80 0.0017 23.7 5.1 24 190-213 25-48 (65)
79 PRK13428 F0F1 ATP synthase sub 41.5 2.6E+02 0.0056 27.6 10.1 64 157-220 24-87 (445)
80 COG4026 Uncharacterized protei 41.3 1.4E+02 0.0031 27.9 7.8 45 168-212 145-189 (290)
81 TIGR00219 mreC rod shape-deter 40.6 57 0.0012 30.2 5.2 10 198-207 96-105 (283)
82 PRK14473 F0F1 ATP synthase sub 40.2 2.2E+02 0.0047 23.7 10.1 54 158-211 32-85 (164)
83 PRK09413 IS2 repressor TnpA; R 40.0 61 0.0013 25.9 4.7 27 187-213 79-105 (121)
84 PRK14127 cell division protein 39.3 73 0.0016 26.1 5.0 25 190-214 41-65 (109)
85 PF06698 DUF1192: Protein of u 39.1 82 0.0018 23.2 4.8 25 188-212 23-47 (59)
86 KOG0288 WD40 repeat protein Ti 39.1 2.1E+02 0.0046 28.8 9.0 27 185-211 47-73 (459)
87 PRK10803 tol-pal system protei 39.0 2.5E+02 0.0055 25.6 9.1 31 185-215 60-90 (263)
88 CHL00019 atpF ATP synthase CF0 38.8 2.5E+02 0.0054 24.0 10.1 54 158-211 48-101 (184)
89 PF08781 DP: Transcription fac 38.5 1.6E+02 0.0036 25.2 7.2 20 180-199 16-35 (142)
90 PF11559 ADIP: Afadin- and alp 38.4 2.2E+02 0.0048 23.3 8.7 50 164-213 44-93 (151)
91 PF04977 DivIC: Septum formati 37.8 82 0.0018 22.5 4.7 25 190-214 21-45 (80)
92 KOG4343 bZIP transcription fac 37.7 1.3E+02 0.0027 31.4 7.4 59 156-214 276-337 (655)
93 PRK14127 cell division protein 37.1 71 0.0015 26.1 4.6 38 186-224 30-67 (109)
94 PF12808 Mto2_bdg: Micro-tubul 37.0 67 0.0014 23.2 3.9 24 190-213 26-49 (52)
95 PF04340 DUF484: Protein of un 37.0 1.1E+02 0.0024 26.9 6.2 24 190-213 58-84 (225)
96 PF10473 CENP-F_leu_zip: Leuci 36.5 2.7E+02 0.0058 23.7 9.3 53 162-214 28-80 (140)
97 PF06785 UPF0242: Uncharacteri 36.1 53 0.0011 32.3 4.3 26 182-207 197-222 (401)
98 PRK13922 rod shape-determining 35.4 86 0.0019 28.3 5.4 28 185-212 68-95 (276)
99 PRK14475 F0F1 ATP synthase sub 35.4 2.7E+02 0.0059 23.4 10.1 63 157-219 33-95 (167)
100 TIGR03321 alt_F1F0_F0_B altern 35.1 3.3E+02 0.0072 24.4 10.1 50 158-207 29-78 (246)
101 COG2433 Uncharacterized conser 35.0 1.1E+02 0.0023 32.3 6.4 24 190-213 426-449 (652)
102 PRK08475 F0F1 ATP synthase sub 34.5 2.9E+02 0.0062 23.5 10.1 51 158-208 46-96 (167)
103 KOG0977 Nuclear envelope prote 34.4 88 0.0019 32.2 5.7 35 180-214 36-77 (546)
104 PF02183 HALZ: Homeobox associ 33.9 1.6E+02 0.0035 20.3 5.7 26 189-214 8-33 (45)
105 PF07407 Seadorna_VP6: Seadorn 33.6 62 0.0014 31.8 4.3 12 187-198 47-58 (420)
106 PRK13460 F0F1 ATP synthase sub 33.4 3E+02 0.0064 23.3 10.1 54 157-210 39-92 (173)
107 smart00243 GAS2 Growth-Arrest- 33.3 18 0.0004 27.8 0.6 12 78-89 55-66 (73)
108 PF11460 DUF3007: Protein of u 33.1 91 0.002 25.5 4.6 22 203-224 81-102 (104)
109 cd08533 SAM_PNT-ETS-1,2 Steril 32.9 23 0.0005 26.8 1.1 14 78-91 41-54 (71)
110 PF08614 ATG16: Autophagy prot 32.7 1.4E+02 0.003 25.9 6.0 36 185-220 157-192 (194)
111 cd08531 SAM_PNT-ERG_FLI-1 Ster 32.6 23 0.00051 26.9 1.1 15 78-92 43-57 (75)
112 PF07407 Seadorna_VP6: Seadorn 32.6 93 0.002 30.6 5.3 28 190-217 36-63 (420)
113 KOG2483 Upstream transcription 32.1 1.2E+02 0.0027 27.8 5.9 33 182-214 101-133 (232)
114 PRK13923 putative spore coat p 31.9 1.6E+02 0.0035 26.0 6.3 37 185-222 110-146 (170)
115 PRK09413 IS2 repressor TnpA; R 31.9 92 0.002 24.9 4.5 27 188-214 73-99 (121)
116 PF07047 OPA3: Optic atrophy 3 31.6 97 0.0021 25.6 4.7 34 180-213 99-132 (134)
117 PRK11239 hypothetical protein; 31.6 83 0.0018 28.8 4.6 27 188-214 185-211 (215)
118 PF11382 DUF3186: Protein of u 31.5 69 0.0015 30.0 4.3 40 187-226 33-74 (308)
119 PF06305 DUF1049: Protein of u 31.1 71 0.0015 22.6 3.4 7 197-203 59-65 (68)
120 PF05529 Bap31: B-cell recepto 30.8 3.1E+02 0.0067 23.4 7.9 29 185-213 160-188 (192)
121 cd07429 Cby_like Chibby, a nuc 30.7 88 0.0019 25.7 4.2 19 195-213 81-99 (108)
122 KOG4797 Transcriptional regula 30.6 3.1E+02 0.0067 23.0 7.3 29 186-214 67-95 (123)
123 PF10205 KLRAQ: Predicted coil 30.4 2.8E+02 0.0062 22.6 7.0 28 187-214 41-68 (102)
124 PRK06231 F0F1 ATP synthase sub 30.4 3.8E+02 0.0083 23.6 10.1 53 158-210 72-124 (205)
125 PRK13729 conjugal transfer pil 30.3 1.8E+02 0.004 29.5 7.1 27 186-212 97-123 (475)
126 cd08203 SAM_PNT Sterile alpha 29.8 29 0.00063 25.4 1.2 14 78-91 39-52 (66)
127 KOG3705 Glycoprotein 6-alpha-L 29.7 70 0.0015 32.4 4.1 31 194-224 52-85 (580)
128 PRK13922 rod shape-determining 29.6 1.7E+02 0.0038 26.3 6.4 19 185-203 75-93 (276)
129 PF14077 WD40_alt: Alternative 29.6 46 0.00099 23.7 2.1 19 187-205 19-37 (48)
130 PF07926 TPR_MLP1_2: TPR/MLP1/ 29.5 3.1E+02 0.0067 22.3 7.7 22 188-209 107-128 (132)
131 PF05300 DUF737: Protein of un 29.1 3.5E+02 0.0075 24.1 8.0 48 170-217 118-165 (187)
132 COG1382 GimC Prefoldin, chaper 28.9 2.5E+02 0.0054 23.5 6.6 26 189-214 80-105 (119)
133 cd08757 SAM_PNT_ESE Sterile al 28.5 31 0.00066 25.6 1.1 15 78-92 41-55 (68)
134 PF06785 UPF0242: Uncharacteri 28.1 1.3E+02 0.0028 29.7 5.4 35 182-216 123-157 (401)
135 PF09726 Macoilin: Transmembra 27.9 3.5E+02 0.0075 28.7 8.9 16 193-208 545-560 (697)
136 PRK10803 tol-pal system protei 27.9 1.5E+02 0.0032 27.2 5.6 34 187-221 55-88 (263)
137 PF06244 DUF1014: Protein of u 27.8 92 0.002 26.0 3.9 39 183-228 76-114 (122)
138 PF09766 FimP: Fms-interacting 27.7 1.7E+02 0.0037 28.0 6.3 42 168-209 111-152 (355)
139 PRK10963 hypothetical protein; 27.6 1.5E+02 0.0033 26.3 5.6 24 190-213 55-81 (223)
140 PF06632 XRCC4: DNA double-str 27.2 1.5E+02 0.0034 28.5 5.9 9 79-87 60-68 (342)
141 PF12925 APP_E2: E2 domain of 27.2 2.6E+02 0.0056 25.2 6.9 39 183-221 71-109 (193)
142 COG1792 MreC Cell shape-determ 27.1 1E+02 0.0022 28.6 4.6 24 187-210 84-107 (284)
143 PF11690 DUF3287: Protein of u 26.9 2.3E+02 0.005 23.4 6.0 27 186-212 42-68 (109)
144 PF05700 BCAS2: Breast carcino 26.9 1.8E+02 0.0039 25.9 5.9 28 187-214 137-164 (221)
145 COG2919 Septum formation initi 26.6 1.5E+02 0.0032 24.0 4.9 26 190-215 61-86 (117)
146 PRK08476 F0F1 ATP synthase sub 26.6 3.7E+02 0.008 22.2 10.1 52 158-209 31-82 (141)
147 KOG4661 Hsp27-ERE-TATA-binding 26.4 3.9E+02 0.0083 28.5 8.7 11 80-90 420-430 (940)
148 PF14645 Chibby: Chibby family 26.4 94 0.002 25.5 3.7 20 193-212 78-97 (116)
149 PF11932 DUF3450: Protein of u 26.3 4.7E+02 0.01 23.3 9.6 28 186-213 70-97 (251)
150 COG4026 Uncharacterized protei 26.3 2.2E+02 0.0047 26.8 6.3 7 204-210 174-180 (290)
151 PF07716 bZIP_2: Basic region 26.1 2.3E+02 0.0049 19.6 8.0 45 164-208 7-54 (54)
152 KOG2412 Nuclear-export-signal 26.1 5.9E+02 0.013 26.7 9.9 26 163-188 212-237 (591)
153 KOG3650 Predicted coiled-coil 26.0 2.4E+02 0.0051 23.4 5.8 43 165-214 56-98 (120)
154 PRK10884 SH3 domain-containing 25.8 2.1E+02 0.0047 25.5 6.2 29 185-213 131-159 (206)
155 KOG0982 Centrosomal protein Nu 25.1 3.1E+02 0.0067 28.0 7.6 27 187-213 298-324 (502)
156 PF06210 DUF1003: Protein of u 25.1 3.7E+02 0.0081 21.7 7.6 38 172-214 57-94 (108)
157 PF10226 DUF2216: Uncharacteri 25.0 5.2E+02 0.011 23.4 8.4 54 161-214 19-76 (195)
158 PF11559 ADIP: Afadin- and alp 24.6 2.6E+02 0.0056 23.0 6.1 47 165-211 59-105 (151)
159 PF04568 IATP: Mitochondrial A 24.5 3.8E+02 0.0082 21.6 7.2 40 174-213 57-96 (100)
160 COG5509 Uncharacterized small 24.5 1.3E+02 0.0029 22.6 3.8 23 188-210 27-49 (65)
161 KOG1265 Phospholipase C [Lipid 24.5 4.2E+02 0.009 29.6 8.8 58 166-223 1029-1086(1189)
162 KOG0977 Nuclear envelope prote 24.2 1.9E+02 0.0041 29.9 6.1 27 188-214 164-190 (546)
163 PRK13729 conjugal transfer pil 24.2 1.9E+02 0.0042 29.4 6.1 17 187-203 77-93 (475)
164 cd08540 SAM_PNT-ERG Sterile al 24.1 41 0.00089 25.7 1.1 15 78-92 43-57 (75)
165 cd08532 SAM_PNT-PDEF-like Ster 24.1 41 0.00089 25.7 1.1 40 52-91 11-59 (76)
166 PF15397 DUF4618: Domain of un 24.0 4.6E+02 0.01 24.6 8.2 35 180-214 194-228 (258)
167 KOG4643 Uncharacterized coiled 23.9 1.8E+02 0.0038 32.5 6.0 33 182-214 526-558 (1195)
168 PF15397 DUF4618: Domain of un 23.7 1.9E+02 0.0041 27.1 5.6 47 187-234 194-240 (258)
169 TIGR00219 mreC rod shape-deter 23.5 1.2E+02 0.0027 28.0 4.4 13 198-210 71-83 (283)
170 PF02403 Seryl_tRNA_N: Seryl-t 23.4 2.1E+02 0.0046 22.1 5.1 28 187-214 68-95 (108)
171 COG3074 Uncharacterized protei 23.4 1.8E+02 0.0038 22.6 4.4 12 197-208 50-61 (79)
172 TIGR02894 DNA_bind_RsfA transc 23.2 1.9E+02 0.0041 25.4 5.1 17 196-212 114-130 (161)
173 COG4467 Regulator of replicati 23.2 1.6E+02 0.0036 24.4 4.5 24 190-213 26-49 (114)
174 PRK04325 hypothetical protein; 23.1 3.3E+02 0.0072 20.5 6.5 19 187-205 10-28 (74)
175 TIGR02338 gimC_beta prefoldin, 23.1 3E+02 0.0064 21.7 5.9 25 190-214 78-102 (110)
176 TIGR01834 PHA_synth_III_E poly 23.1 1.3E+02 0.0028 29.0 4.5 27 188-214 291-317 (320)
177 PLN02678 seryl-tRNA synthetase 23.0 3.3E+02 0.007 27.3 7.4 36 186-222 71-106 (448)
178 PF10186 Atg14: UV radiation r 23.0 3.8E+02 0.0083 23.6 7.3 45 171-215 55-99 (302)
179 TIGR02010 IscR iron-sulfur clu 23.0 66 0.0014 26.1 2.2 31 54-90 104-134 (135)
180 PF05266 DUF724: Protein of un 22.6 4.2E+02 0.0092 23.4 7.3 31 180-210 125-155 (190)
181 PRK02793 phi X174 lysis protei 22.6 3.3E+02 0.0073 20.3 6.4 19 186-204 8-26 (72)
182 PF01920 Prefoldin_2: Prefoldi 22.5 3.4E+02 0.0073 20.3 6.7 23 191-213 74-96 (106)
183 PRK07353 F0F1 ATP synthase sub 22.0 4.2E+02 0.009 21.2 10.1 54 158-211 29-82 (140)
184 PRK15422 septal ring assembly 22.0 2.8E+02 0.0061 21.7 5.4 22 189-210 21-42 (79)
185 KOG1363 Predicted regulator of 21.8 4.7E+02 0.01 26.4 8.2 31 163-193 298-331 (460)
186 cd08534 SAM_PNT-GABP-alpha Ste 21.8 48 0.001 26.1 1.1 42 50-91 18-69 (89)
187 PRK00736 hypothetical protein; 21.7 3.4E+02 0.0073 20.1 6.4 20 186-205 5-24 (68)
188 PRK06568 F0F1 ATP synthase sub 21.6 5.2E+02 0.011 22.2 10.1 58 157-214 27-84 (154)
189 COG3074 Uncharacterized protei 21.6 3.6E+02 0.0079 21.0 5.8 24 188-211 20-43 (79)
190 PF04880 NUDE_C: NUDE protein, 21.5 1.6E+02 0.0035 25.8 4.4 20 195-214 26-45 (166)
191 PF11853 DUF3373: Protein of u 21.3 95 0.0021 31.6 3.3 26 187-212 32-57 (489)
192 PRK13455 F0F1 ATP synthase sub 21.2 5.2E+02 0.011 22.0 10.1 50 159-208 52-101 (184)
193 cd07665 BAR_SNX1 The Bin/Amphi 21.2 1.9E+02 0.0042 26.4 5.0 32 182-213 25-56 (234)
194 PF12718 Tropomyosin_1: Tropom 21.1 2.6E+02 0.0057 23.4 5.5 27 186-212 35-61 (143)
195 PF07888 CALCOCO1: Calcium bin 20.9 7.2E+02 0.016 25.8 9.5 50 164-213 149-198 (546)
196 cd08538 SAM_PNT-ESE-2-like Ste 20.7 53 0.0011 25.4 1.1 14 79-92 47-60 (78)
197 cd08535 SAM_PNT-Tel_Yan Steril 20.6 52 0.0011 24.6 1.1 14 78-91 40-53 (68)
198 smart00338 BRLZ basic region l 20.5 3.2E+02 0.007 19.3 8.8 55 161-215 5-62 (65)
199 PRK06569 F0F1 ATP synthase sub 20.5 5.6E+02 0.012 22.1 8.5 50 157-206 33-82 (155)
200 TIGR01144 ATP_synt_b ATP synth 20.3 4.7E+02 0.01 21.1 10.1 50 158-207 19-68 (147)
201 COG4467 Regulator of replicati 20.3 1.2E+02 0.0026 25.2 3.2 26 186-211 29-54 (114)
202 smart00251 SAM_PNT SAM / Point 20.1 55 0.0012 25.1 1.1 40 51-90 17-66 (82)
203 PF11221 Med21: Subunit 21 of 20.1 3.3E+02 0.0072 22.6 5.9 15 195-209 106-120 (144)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.30 E-value=1.9e-11 Score=88.80 Aligned_cols=57 Identities=46% Similarity=0.559 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQL 220 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l 220 (245)
++++.+|+++||+||++||.||++|+.+||.++..|+.+|..|..++..|.. +...|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~-e~~~l 59 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRR-ELEKL 59 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5688999999999999999999999999999999999999999999999886 34433
No 2
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.23 E-value=2.9e-11 Score=119.05 Aligned_cols=58 Identities=47% Similarity=0.564 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
.+|.++-||+.|||||||||+.||+|||+|+..||.++..|..||+.|++++..|+++
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~q 331 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQ 331 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999874
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.22 E-value=8.2e-11 Score=85.38 Aligned_cols=57 Identities=46% Similarity=0.592 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQL 220 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l 220 (245)
..++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..|.. ++..|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~-~~~~L 59 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKK-EIQSL 59 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5678999999999999999999999999999999999999999999998886 34444
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.12 E-value=3.6e-10 Score=79.95 Aligned_cols=51 Identities=49% Similarity=0.634 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
++++.+|. +||++|++||.||++|+.+|+.+|..|+.+|..|..++..|.+
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677787 9999999999999999999999999999999999999998875
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.08 E-value=2e-10 Score=106.55 Aligned_cols=58 Identities=31% Similarity=0.481 Sum_probs=53.6
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
...|+...||+-|+.||||.|+.||+|||+|+.+||.+|.-||..|..|-.++..|+.
T Consensus 283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 3467788999999999999999999999999999999999999999999999888764
No 6
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.86 E-value=1.3e-08 Score=92.51 Aligned_cols=67 Identities=37% Similarity=0.392 Sum_probs=60.1
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 148 RGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 148 ~~~r~r~~~~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
.++|||-..+++.- +||-+||+.|||+.|+-+|.|||+++.++|.++..|.+||+.|+.++..|+.+
T Consensus 53 ~~~rKr~RL~HLS~-EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSW-EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred chHHHHHhhcccCH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56787777777765 88999999999999999999999999999999999999999999998888754
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.84 E-value=3.6e-09 Score=102.94 Aligned_cols=59 Identities=32% Similarity=0.398 Sum_probs=54.3
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
...++.+.||-||+|+|.+||+.||+|||+|++.||.+|....+||.+|++++++|+..
T Consensus 243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~ 301 (472)
T KOG0709|consen 243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELS 301 (472)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhc
Confidence 34677888999999999999999999999999999999999999999999999998753
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.91 E-value=7.6e-07 Score=69.20 Aligned_cols=57 Identities=35% Similarity=0.347 Sum_probs=48.0
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
..+....|..||..|||.+|+.||.||..++.+||.++..|+.+...|..++..+.+
T Consensus 23 ~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~ 79 (92)
T PF03131_consen 23 EEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQ 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667799999999999999999999999999999998888777777776665553
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.32 E-value=0.0012 Score=61.17 Aligned_cols=57 Identities=30% Similarity=0.404 Sum_probs=45.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 025985 168 RRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK---ERYKQLMEKV 224 (245)
Q Consensus 168 rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~---~~~~~l~~~~ 224 (245)
|...+||+.|.+||+||-.++..||.+|..|.-+|..|-..+..|++ ++.+.+++.+
T Consensus 209 Rkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi 268 (279)
T KOG0837|consen 209 RKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHI 268 (279)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468999999999999999999999999999999998888777663 2334444444
No 10
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.31 E-value=0.00093 Score=61.28 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=53.3
Q ss_pred CCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 153 RVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 153 r~~~~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
+....+.+++..+=..|..+|=++|++||.+.|.-..+...+|..|+.||+.|+.++++|+++
T Consensus 182 ~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 182 SKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred ccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666779999999999999999999999999999999999999999873
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.99 E-value=0.0037 Score=58.52 Aligned_cols=62 Identities=32% Similarity=0.412 Sum_probs=49.5
Q ss_pred HHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Q 025985 163 AQQRQRRM-IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE--RYKQLMEKV 224 (245)
Q Consensus 163 ~~rr~rR~-ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~--~~~~l~~~~ 224 (245)
.+++.+|+ +.|..+|.|=|.||++-.+.|+-+...|+.+|++|+.+.++|.++ .+++||..+
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 456667999999999999999999999999999999999999753 456666654
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.95 E-value=0.011 Score=60.02 Aligned_cols=48 Identities=38% Similarity=0.474 Sum_probs=41.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
|-.||.=|||.+|++||+||=..|..||..|..|..|-++|+++..++
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~ 537 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDEL 537 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777899999999999999999999999999998888877765544
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=95.77 E-value=0.11 Score=43.99 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 160 d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+....|.+||-.|||==|+-||-|.=..-.+||.+-..|..+.+.|+.+++.+.
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577788889999999999999998888888655555544444444444443
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=89.72 E-value=0.021 Score=54.92 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985 158 PLDKAAQQRQRRMIKNRESAAR---SRERKQAYQVELESLAVRLE-EENEQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~r---SR~RKkay~~eLE~~v~~Le-~EN~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
...+.+.++..|+.+|+..|+. ||.+++.++.+|+.+|+.|+ .+|..|..++..|.. +++.++..+
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn-e~~~l~~~l 216 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN-EADHLEKEL 216 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc-HHHHHHHHH
Confidence 3446688999999999999999 99999999999999999999 999999988887764 444444444
No 15
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=87.64 E-value=9.5 Score=30.22 Aligned_cols=65 Identities=26% Similarity=0.378 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVVE 229 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~~~~~~ 229 (245)
.+.+..|-++.-+.+.+.+..|.+-+..|..++..|..+...|...+..+. .|...|+.++|..|
T Consensus 58 n~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~--~Y~~fL~~v~~~~~ 122 (126)
T PF13863_consen 58 NEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK--KYEEFLEKVVPKSP 122 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccc
Confidence 344455555666667777788888889999999999999999999999886 58889999886543
No 16
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.97 E-value=6.4 Score=31.54 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 181 RERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 181 R~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
....++.+.+++.++..|+.+|..|+.++..|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3556677889999999999999999999999875
No 17
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.73 E-value=12 Score=27.02 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKEKAER-T-KERYKQLME 222 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l-~-~~~~~~l~~ 222 (245)
...+..+.+|+.++..|+.+|..|+.++..| . .....++..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4456678899999999999999999999998 3 333344444
No 18
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.58 E-value=2.6 Score=31.17 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+-|..++..|++.|.+|..++.-|+
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544333
No 19
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=80.30 E-value=3.1 Score=34.59 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 184 KQAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 184 Kkay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
|..-+++|+.++.+|+-||..|++++.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999875
No 20
>PHA03162 hypothetical protein; Provisional
Probab=77.29 E-value=1.8 Score=36.80 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
+|+.-+++|+.++.+|+-||..|++++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999874
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.02 E-value=11 Score=32.85 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985 181 RERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 181 R~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
-.+.+..+.+|..++..|+.||..|..++..+++ .|+.|+.-+
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e-DY~~L~~Im 148 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEE-DYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3455677788888899999999998888876664 677777543
No 22
>PHA03155 hypothetical protein; Provisional
Probab=75.86 E-value=3.7 Score=34.08 Aligned_cols=25 Identities=32% Similarity=0.240 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
-+++|+.++.+|+-||..|++++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998854
No 23
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=75.36 E-value=14 Score=29.21 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
+..+.+|+.++..|..||.+|+.++...+. +.++|+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~-Ek~~Ll~ 84 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTERE-EKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344667777777777777777777665543 4555553
No 24
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=74.52 E-value=12 Score=34.42 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985 184 KQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 184 Kkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
=+....|||.++..+..++..|+.+++.|++. .-.|.|++
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D-N~kLYEKi 130 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRAD-NVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33445688888888888888888888888763 44566655
No 25
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=73.08 E-value=0.87 Score=43.98 Aligned_cols=52 Identities=35% Similarity=0.490 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL-KEKAERTK 214 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~-~~~~~l~~ 214 (245)
++++++=+++||.+|-+||.|||..+..|+.+...+..+|..|. .+++.|..
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~ 335 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRN 335 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHh
Confidence 44557778899999999999999999999999999999999999 55554443
No 26
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=72.91 E-value=6.4 Score=30.97 Aligned_cols=32 Identities=38% Similarity=0.397 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-|+.++..|...+..++.+|..|..++..+++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45778899999999999999999999987664
No 27
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=72.42 E-value=36 Score=25.10 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAERTK-ERYKQLMEKVV 225 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~-~~~~~l~~~~~ 225 (245)
.....+..++.++..|+.||.+|+.+...|.. .+.+++-..-+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~l 71 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 55667888999999999999999999998864 33344444443
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.81 E-value=37 Score=30.36 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+.-+..++..+..|+++|.+|+.++..++
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566655555555443
No 29
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=67.41 E-value=26 Score=26.30 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
+.|=....+|+.||..|+.+...+.. +-.+|++
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~-ER~~L~e 42 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWRE-ERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33334445666677777666666654 2334443
No 30
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.48 E-value=8.3 Score=32.05 Aligned_cols=27 Identities=33% Similarity=0.198 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKE 208 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~ 208 (245)
.-=|+.+.+|+.++..|++||.-|+.-
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334566778888888888888877763
No 31
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=65.99 E-value=24 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
.|+..+..++.||+.|+..++.+.+ ..+.||.
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~e-nvk~ll~ 42 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEE-NVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3445566677788888888877765 4555553
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.25 E-value=34 Score=25.90 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.+|..+...|.++|..|+.++..|+
T Consensus 28 eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 28 EELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344443444444445555555444
No 33
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.81 E-value=15 Score=29.81 Aligned_cols=28 Identities=29% Similarity=0.190 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-+.+|...+..|.+||.+|+-++..|+.
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777888888888888887765
No 34
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=64.28 E-value=26 Score=32.94 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
..+..||.++..++.+|.....++..++++.+++-+
T Consensus 165 ~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~ 200 (271)
T PF13805_consen 165 PKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAY 200 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Confidence 357899999999999999999999999888777643
No 35
>smart00340 HALZ homeobox associated leucin zipper.
Probab=63.95 E-value=18 Score=25.34 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-|..--+.|.+||.+|++++.+|+.
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555667899999999999999885
No 36
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.96 E-value=27 Score=26.41 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.-|+.++..|+++|..|..+...|..
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444555555555555555555443
No 37
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.76 E-value=15 Score=30.06 Aligned_cols=28 Identities=25% Similarity=0.134 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+.+|...|..|.+||..|+-++..|+.
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666677777777777666654
No 38
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.70 E-value=17 Score=28.23 Aligned_cols=33 Identities=39% Similarity=0.418 Sum_probs=24.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 178 ARSRERKQ----AYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 178 ~rSR~RKk----ay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.+-|.||. ..+..|..++..|.++|..|+.++.
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445554 4577888899999999999998865
No 39
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.46 E-value=1.1e+02 Score=27.04 Aligned_cols=52 Identities=25% Similarity=0.194 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+....++..++-++-..+=..=++.+..++.++..|+-|++.|..++..+.+
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777888889999999999988888888765
No 40
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=60.77 E-value=1e+02 Score=28.06 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
|+-...++|+.+..++-..|...+..=+....+.+.++..++.+-..+..+...--+++.++++.
T Consensus 29 Pi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~ 93 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLN 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888887777777777777777777766666555544444444444443
No 41
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.79 E-value=27 Score=24.20 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+.|......|..||..|+.++..|.
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666655544
No 42
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=59.07 E-value=22 Score=29.15 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.=|.++.+|..+-..|+-||..|+..+.++.
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777888888888888888888888763
No 43
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.72 E-value=21 Score=28.87 Aligned_cols=30 Identities=30% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
|.++.+|..+-..|+-||..|+..+.++.+
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777777777777776553
No 44
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.48 E-value=67 Score=22.87 Aligned_cols=55 Identities=33% Similarity=0.306 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 161 KAAQQRQRRMIKNRESAARSRERKQ---AYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
+...++.+=.+.-|.+-.|-...=+ ..+..|+.+...|..++..|..++..|..+
T Consensus 5 k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 5 KRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666666666666655544 457788999999999999999999988764
No 45
>KOG2829 consensus E2F-like protein [Transcription]
Probab=57.10 E-value=24 Score=33.84 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLE 199 (245)
Q Consensus 159 ~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le 199 (245)
+.+.++.|++||.+- ++|++|+.||..++..++
T Consensus 134 v~~le~Er~k~~erI--------~kK~a~lqEl~~q~~~fk 166 (326)
T KOG2829|consen 134 VSELEEERKKRMERI--------KKKAAQLQELIEQVSAFK 166 (326)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 345556666666554 889999999999987654
No 46
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=56.67 E-value=52 Score=26.10 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAERTKER 216 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~ 216 (245)
=|+-|=.-.+.+|..|+.+|..|..+++.|+.+-
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888899999999999999999999998753
No 47
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.59 E-value=34 Score=25.02 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.+||.++..++.....+++++++++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999998875
No 48
>PF15058 Speriolin_N: Speriolin N terminus
Probab=53.71 E-value=23 Score=32.03 Aligned_cols=26 Identities=31% Similarity=0.167 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.|-+++++|-.||++||+++.-+++
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirE 33 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRE 33 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56677888888888888888877654
No 49
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=53.52 E-value=1.3e+02 Score=28.75 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=39.4
Q ss_pred CccccHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 156 LEPLDKAAQQRQRRMIKNRESAARSRERKQAYQ---VELESLAVRLEEENEQLLKEKAERTKERYK 218 (245)
Q Consensus 156 ~~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~---~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~ 218 (245)
..+.+..-.||+.+++--=-=-++-|+.+.+-+ .+||.+-.+|+..-.+|.+++..|++--..
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777722222345556666554 456677788888888888888877764433
No 50
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=52.50 E-value=82 Score=29.07 Aligned_cols=52 Identities=27% Similarity=0.285 Sum_probs=36.0
Q ss_pred HHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 163 AQQRQRRMI---KNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 163 ~~rr~rR~i---kNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-+||+|-.+ |-|..++.-=..-+..+.+||.+-..|+.++.+|+.++..++.
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 3333333333444556789999999999999999999999886
No 51
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=52.31 E-value=37 Score=25.22 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
|..+.+|+.++.+|+.||..|+...
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788888888999988888654
No 52
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.22 E-value=27 Score=35.28 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 025985 164 QQRQRRMI 171 (245)
Q Consensus 164 ~rr~rR~i 171 (245)
++++..++
T Consensus 72 r~~~~~l~ 79 (472)
T TIGR03752 72 RKRLAKLI 79 (472)
T ss_pred HHHHHHHH
Confidence 33333333
No 53
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=52.02 E-value=1.3e+02 Score=24.57 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=46.6
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
.|+....++|+.+..++=+.|...+..=++.+.+.+.++...+.+-..+..+...--+...++++
T Consensus 27 ~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~ 91 (156)
T PRK05759 27 PPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAK 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888888888888888888888888777777666555444333444433
No 54
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=49.96 E-value=1.7e+02 Score=25.22 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=37.3
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
.|+....++|+.++.+.-+.|...+..=+....+.|.++...+.|-..+...-
T Consensus 54 ~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 54 PRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777788887777777777777777777666666554443
No 55
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=49.53 E-value=1.6e+02 Score=24.88 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
|+....+.|+.++.+.-..|...+..=+..+.+.+.++...+.+-..+..+...--.+..++++
T Consensus 43 pI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~ 106 (174)
T PRK07352 43 FLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIE 106 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888877777777777777777776666655554444333333333
No 56
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.84 E-value=38 Score=27.11 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLL 206 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~ 206 (245)
.|+.+...|+.|...|+
T Consensus 45 ~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 45 KLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33333334444444443
No 57
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=48.14 E-value=68 Score=27.40 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
+|..+|..|.+||.++..++..++. .|+.|..-.
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~-k~e~l~~~~ 118 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKS-KYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhh
Confidence 6888999999999999999988775 455555543
No 58
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=48.14 E-value=56 Score=33.04 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=46.8
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAY----------QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay----------~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.+-+.+.||.|-|++--||-+++...=... =.+|..+|..|+..|..|..++..|..
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4456888999999999999988887654422 358999999999999999999887654
No 59
>PHA00728 hypothetical protein
Probab=48.12 E-value=24 Score=30.06 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025985 193 SLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 193 ~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
..|++|+.||++|++.+.+|..
T Consensus 5 teveql~keneelkkkla~lea 26 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEA 26 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHH
Confidence 4577899999999999888764
No 60
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=47.48 E-value=1.4e+02 Score=26.52 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 178 ARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 178 ~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.-=++|++|+.+-+.+...++.+..+|+.++...++
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334567788888888888888888888888876654
No 61
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=47.24 E-value=1.7e+02 Score=24.42 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=40.0
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.|+-...++|+.+..++-+.|...+..=++...+.|.++...+.+-..+..+-.
T Consensus 31 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14471 31 KPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888888888888877777777555544433
No 62
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=47.10 E-value=75 Score=24.23 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK-ERYKQLMEKVV 225 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~-~~~~~l~~~~~ 225 (245)
++.|+.+...|+.||.+|+-+...+.. .+.+++-..-+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~~~L 82 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAREKL 82 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHcC
Confidence 888999999999999999999988863 33444444333
No 63
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=46.17 E-value=1.8e+02 Score=24.56 Aligned_cols=55 Identities=16% Similarity=0.336 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
.|+-...++|+.+....-+.|...+..=.+.+.+.+.++...+.+-..+..+-..
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~ 95 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKE 95 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888887777788887777777666665544433
No 64
>PF14989 CCDC32: Coiled-coil domain containing 32
Probab=46.12 E-value=33 Score=29.60 Aligned_cols=38 Identities=18% Similarity=0.436 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEEN-----EQLLKEKAERTKERYKQLMEK 223 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN-----~~L~~~~~~l~~~~~~~l~~~ 223 (245)
.|+..||.++..++--+ ..|..-+++.++.++..||..
T Consensus 56 ~YLasLE~KL~rik~~~~~vtsKemL~sL~~aK~d~~~rlL~~ 98 (148)
T PF14989_consen 56 VYLASLERKLKRIKGKNREVTSKEMLRSLSQAKEDCWDRLLSS 98 (148)
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 59999999998888777 356677777777777777755
No 65
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=45.93 E-value=1.8e+02 Score=24.29 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=36.6
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~ 208 (245)
.|+....++|+.+..+.-..|.+.+..=.+...+.+.++...+.+-..+..+
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~ 96 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQ 96 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888878888887777777777777777777766665554443
No 66
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=45.77 E-value=1.7e+02 Score=24.19 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=40.3
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.|+-...++|+.+..+.-+.|...+..=.++..+.+.++...+.+-..+..+-.
T Consensus 28 kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~ 81 (159)
T PRK13461 28 DKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888888888888888888777777555554433
No 67
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=45.73 E-value=68 Score=28.65 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+-.|++|...+++ ...+..+.+|..+|..|+.+.+++++.+.+|.
T Consensus 89 Ey~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 89 EYWRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred hhHHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555542 34455667788888888887788888777775
No 68
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=45.35 E-value=1.9e+02 Score=24.55 Aligned_cols=64 Identities=17% Similarity=0.350 Sum_probs=42.6
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
|+-...++|+.+..+.-+.|...+..=++...+.+.++...+.+-..+..+-..--+...++++
T Consensus 42 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~ 105 (173)
T PRK13453 42 PLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQII 105 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888777777777777777777777666655554443333333333
No 69
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=44.53 E-value=2e+02 Score=27.18 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=41.1
Q ss_pred CCCCccccHHHHHHHHHHHHhHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 153 RVMLEPLDKAAQQRQRRMIKNRESAA--RSRERKQAY-QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 153 r~~~~~~d~~~~rr~rR~ikNReSA~--rSR~RKkay-~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-.-....++...||.|-..--.-+-- ..|.-+-+| +.+|+.+-..|..||+.|+.....|-.
T Consensus 61 L~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~ 125 (292)
T KOG4005|consen 61 LDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLA 125 (292)
T ss_pred hcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455677777777765553322222 234445555 779999999999999999888777643
No 70
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=44.31 E-value=29 Score=24.05 Aligned_cols=42 Identities=29% Similarity=0.219 Sum_probs=12.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 167 QRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 167 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
.++...|++=|...-.. ...+.+||.++..|..||..|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34555566665544332 2457788899999999988888765
No 71
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.05 E-value=84 Score=23.52 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=13.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 168 RRMIKNRESAARSRERKQAYQVELESLAVRLE 199 (245)
Q Consensus 168 rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le 199 (245)
+++..-|.+|.++=.-+-.-+.+|-.++..|+
T Consensus 29 k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 29 KRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544443333333333333333
No 72
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=43.66 E-value=51 Score=27.29 Aligned_cols=38 Identities=29% Similarity=0.205 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL 206 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~ 206 (245)
+..|..|..++|+.+. ++.+++|+.++..|+.+.+.+.
T Consensus 95 E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 95 EYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555544432 3456667777766666665544
No 73
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=43.65 E-value=2.3e+02 Score=25.07 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=38.2
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLK 207 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~ 207 (245)
.|+....++|+.++.+.-+.|.+.+..=...+.+.|.++..-+.+-..+..
T Consensus 76 ~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 76 PRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888887777777777777766666555543
No 74
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=43.46 E-value=1.9e+02 Score=23.91 Aligned_cols=59 Identities=27% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH--HhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 025985 161 KAAQQRQRRMI--KNRE-SAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE--RYKQLME 222 (245)
Q Consensus 161 ~~~~rr~rR~i--kNRe-SA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~--~~~~l~~ 222 (245)
+.+++.+-|=| +|+. |....|.+++.+ |...+...+.|.++|+.+.+.|.+- +.+++|+
T Consensus 55 ~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~---lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 55 KRVENEKLKAIGARNLLKSEAKQREAQQQQ---LQALIAEKKMELERLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566656 4443 344555555554 5556667777777788777777643 3344444
No 75
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=43.30 E-value=48 Score=31.70 Aligned_cols=29 Identities=34% Similarity=0.266 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
-..++.|..++..|++||..|+.+...|.
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777788888888888887777765
No 76
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=43.23 E-value=44 Score=25.89 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 025985 197 RLEEENEQLLKEKA 210 (245)
Q Consensus 197 ~Le~EN~~L~~~~~ 210 (245)
.|.+||.+|+.++.
T Consensus 4 ei~eEn~~Lk~eiq 17 (76)
T PF07334_consen 4 EIQEENARLKEEIQ 17 (76)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666666
No 77
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=42.60 E-value=28 Score=27.47 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.|+..|...+..|..+|..|+.++.+|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777777777777776654
No 78
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=41.57 E-value=80 Score=23.71 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.|-.++..+..|+..|..+++..+
T Consensus 25 ~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 25 LLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666665555444
No 79
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=41.52 E-value=2.6e+02 Score=27.64 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=41.3
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQL 220 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l 220 (245)
.|+-...++|+....++=+.|...+.+=+++..+.|.++...+.|-.++..+-..--++..+++
T Consensus 24 ~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~ 87 (445)
T PRK13428 24 PPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQL 87 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888777777777777777777666666655544443333333333
No 80
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.33 E-value=1.4e+02 Score=27.94 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=27.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 168 RRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 168 rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
...++-.+.-...-.++++-++++..+++.|+-||.+|...+..+
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444556677777777777777777777766654443
No 81
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=40.57 E-value=57 Score=30.24 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 025985 198 LEEENEQLLK 207 (245)
Q Consensus 198 Le~EN~~L~~ 207 (245)
|++||++|++
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 82
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=40.16 E-value=2.2e+02 Score=23.72 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
|+-...++|+.+..++=+.|...+..=+....+.+.++...+.+-..+..+-..
T Consensus 32 pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~ 85 (164)
T PRK14473 32 PVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQE 85 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888877777777777777777666665554443
No 83
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=40.03 E-value=61 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.110 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.+.+|+.++.+|+.||+-|++...-..
T Consensus 79 ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 79 QIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777778888888887777766443
No 84
>PRK14127 cell division protein GpsB; Provisional
Probab=39.35 E-value=73 Score=26.06 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.|..++..|+++|.+|+.++.+++.
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554443
No 85
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=39.14 E-value=82 Score=23.21 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
++||+.++..|+.|..+++..+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888888877643
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.09 E-value=2.1e+02 Score=28.83 Aligned_cols=27 Identities=41% Similarity=0.353 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
++.+.++|..+.+|++||.+|..+.-.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999988776544
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.98 E-value=2.5e+02 Score=25.63 Aligned_cols=31 Identities=10% Similarity=-0.065 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
+..++.|+.+|..|+-.++++..+++.+.++
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666543
No 88
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=38.81 E-value=2.5e+02 Score=23.99 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
|+-...++|+....++=..|...+..=+....+.+.++...+.+-..+..+...
T Consensus 48 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~ 101 (184)
T CHL00019 48 VLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYS 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888777777777777777777666666555544433
No 89
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=38.54 E-value=1.6e+02 Score=25.16 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025985 180 SRERKQAYQVELESLAVRLE 199 (245)
Q Consensus 180 SR~RKkay~~eLE~~v~~Le 199 (245)
+=++|++|+.+|..+...++
T Consensus 16 rI~~K~~~LqEL~~Q~va~k 35 (142)
T PF08781_consen 16 RIKKKKEQLQELILQQVAFK 35 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33789999999998776553
No 90
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.39 E-value=2.2e+02 Score=23.33 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=35.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.....|=...||.......++..-+..|+..+..|+.+++.+.+++..+.
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555677777777777777777788888788777777777766444
No 91
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.82 E-value=82 Score=22.53 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+..++..|+.++..|+.++.+|++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 92
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=37.68 E-value=1.3e+02 Score=31.45 Aligned_cols=59 Identities=20% Similarity=0.093 Sum_probs=48.3
Q ss_pred CccccHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 156 LEPLDKAAQQRQRRMIKNRESAARSRER---KQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 156 ~~~~d~~~~rr~rR~ikNReSA~rSR~R---Kkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+..+-++..|..|-.++-..|-.+-.+- =++.+++|+.+-++|+.||..|++++..+..
T Consensus 276 d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 276 DIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 5667777777777777777777766654 4578999999999999999999999999875
No 93
>PRK14127 cell division protein GpsB; Provisional
Probab=37.06 E-value=71 Score=26.14 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
+|++++-..+..|..||..|+.++..|++ +..++-.++
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~-~l~e~~~~~ 67 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKA-QVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 57777777778888888888888887775 344444433
No 94
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=37.00 E-value=67 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+...++..|+.||..|+.+++.++
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677888889999998887543
No 95
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=36.99 E-value=1.1e+02 Score=26.87 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=11.9
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLE---EENEQLLKEKAERT 213 (245)
Q Consensus 190 eLE~~v~~Le---~EN~~L~~~~~~l~ 213 (245)
+|+.++..|- .+|+.+-.++..+.
T Consensus 58 ~L~~~l~~Li~~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 58 QLEEQLEELIENARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 55666665555443
No 96
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=36.52 E-value=2.7e+02 Score=23.70 Aligned_cols=53 Identities=21% Similarity=0.092 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 162 AAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 162 ~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
..++-..-...|++.+-.--.-+|+.+..|+.++..+..+...|..++..++.
T Consensus 28 ~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 28 SLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788999998888999999999998888877777777777766654
No 97
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.07 E-value=53 Score=32.26 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLK 207 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~ 207 (245)
.++|+|+..||.+|.+|.-|...|..
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999998877766543
No 98
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=35.39 E-value=86 Score=28.27 Aligned_cols=28 Identities=21% Similarity=0.083 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
-....+|.++...|++||.+|+.++.++
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666665543
No 99
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=35.35 E-value=2.7e+02 Score=23.42 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=45.6
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQ 219 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~ 219 (245)
.|+-...++|+.+..+.=+.|.+.|..=.....+.+.++...+.+-..+..+-..--++..++
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~ 95 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAE 95 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888999888888888888888888877777666655544433333333
No 100
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=35.13 E-value=3.3e+02 Score=24.37 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLK 207 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~ 207 (245)
|+-...++|+.+..+.-..|...+..=.....+.+.++...+.+-..+..
T Consensus 29 Pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 29 PILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555555555555555555544444433
No 101
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.96 E-value=1.1e+02 Score=32.26 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.|+..|+.|+.||..|+.++.+++
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k 449 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELK 449 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 102
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=34.53 E-value=2.9e+02 Score=23.46 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~ 208 (245)
|+-...++|+.+....-+.|...+..=+....+.+.++...+.+-..+..+
T Consensus 46 Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~ 96 (167)
T PRK08475 46 PLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVET 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666655555555555555555555544444433
No 103
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=34.36 E-value=88 Score=32.25 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 025985 180 SRERKQAYQVELE-------SLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 180 SR~RKkay~~eLE-------~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
||.|-|..+.+|- .+|..|+.||..|..++..++.
T Consensus 36 sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 36 SREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555554 4889999999999999987764
No 104
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.89 E-value=1.6e+02 Score=20.33 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+-|-.....|..+|..|..+++.|..
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~a 33 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRA 33 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888775
No 105
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=33.56 E-value=62 Score=31.76 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q 025985 187 YQVELESLAVRL 198 (245)
Q Consensus 187 y~~eLE~~v~~L 198 (245)
-.++|-.+|.+|
T Consensus 47 EN~~Lk~eVerL 58 (420)
T PF07407_consen 47 ENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHH
Confidence 445666666666
No 106
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=33.39 E-value=3e+02 Score=23.28 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=37.6
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.|+....++|+.+..++=..|...+..-++...+.+.++...+.|-..+..+..
T Consensus 39 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 92 (173)
T PRK13460 39 DVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAK 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888877777777777777777766666555444433
No 107
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=33.29 E-value=18 Score=27.85 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=10.5
Q ss_pred ccccHHHHHhhh
Q 025985 78 EMMTLEDFLAKA 89 (245)
Q Consensus 78 geMTLEDFLvkA 89 (245)
|=||||+||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 569999999985
No 108
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=33.15 E-value=91 Score=25.55 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025985 203 EQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 203 ~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
++|.+++++|..++.+.|+..+
T Consensus 81 ~~lqkRle~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 81 EELQKRLEELSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh
Confidence 4777777777777777777654
No 109
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=32.86 E-value=23 Score=26.76 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=12.0
Q ss_pred ccccHHHHHhhhcc
Q 025985 78 EMMTLEDFLAKAGA 91 (245)
Q Consensus 78 geMTLEDFLvkAGv 91 (245)
=.||.|||+.+|+.
T Consensus 41 C~ls~edF~~~~p~ 54 (71)
T cd08533 41 CALGKERFLELAPD 54 (71)
T ss_pred HcCCHHHHHHHcCC
Confidence 36999999999874
No 110
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.70 E-value=1.4e+02 Score=25.86 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTKERYKQL 220 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l 220 (245)
+..+.-||.++..|+.||..|..+.-....++-..+
T Consensus 157 ~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 157 QLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 111
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=32.64 E-value=23 Score=26.93 Aligned_cols=15 Identities=47% Similarity=0.428 Sum_probs=12.2
Q ss_pred ccccHHHHHhhhccc
Q 025985 78 EMMTLEDFLAKAGAV 92 (245)
Q Consensus 78 geMTLEDFLvkAGvv 92 (245)
=.||.|||+.+++-.
T Consensus 43 C~lt~edF~~~~~~~ 57 (75)
T cd08531 43 CKMTKEDFLRLTSAY 57 (75)
T ss_pred HcCCHHHHHHHcCCC
Confidence 369999999998644
No 112
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=32.57 E-value=93 Score=30.60 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTKERY 217 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~~~~ 217 (245)
.|..+-..|++||+.|+.+++.|+.+..
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666666666666666654433
No 113
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=32.13 E-value=1.2e+02 Score=27.78 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.|..+|+..|+.+........+.|+++...|++
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~ 133 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKA 133 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999987665555555555555554443
No 114
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=31.93 E-value=1.6e+02 Score=25.99 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
..++..|+.+...|+.+|..|+.++.-.. +.|+.|+.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~-eDy~~Li~ 146 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITE-EDYRALIV 146 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 46778889999999999999988887554 36666664
No 115
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=31.87 E-value=92 Score=24.87 Aligned_cols=27 Identities=7% Similarity=-0.138 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+..++.++..|+.++.+|+.++.-|++
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888886664
No 116
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=31.63 E-value=97 Score=25.62 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 180 SRERKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 180 SR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
|+.+.+..-+.++.++..|+.+...|..+++.+.
T Consensus 99 s~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 99 SARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444666677778888888888777654
No 117
>PRK11239 hypothetical protein; Provisional
Probab=31.61 E-value=83 Score=28.79 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
...||.+|..|+.|...|+.+++++..
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999988887764
No 118
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=31.48 E-value=69 Score=30.00 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcC
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTKER--YKQLMEKVVP 226 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~~~--~~~l~~~~~~ 226 (245)
-+..|+.++..|++||.+|+.+++.++.+. .++++..+.|
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~ 74 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAP 74 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888888777776432 2445555543
No 119
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.11 E-value=71 Score=22.56 Aligned_cols=7 Identities=57% Similarity=0.748 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 025985 197 RLEEENE 203 (245)
Q Consensus 197 ~Le~EN~ 203 (245)
.++.|++
T Consensus 59 ~le~e~~ 65 (68)
T PF06305_consen 59 KLEKELE 65 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 120
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.78 E-value=3.1e+02 Score=23.42 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
++-+++|+.++...+.+.+.|++|.+.+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555556666655554
No 121
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=30.68 E-value=88 Score=25.69 Aligned_cols=19 Identities=32% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025985 195 AVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 195 v~~Le~EN~~L~~~~~~l~ 213 (245)
..+|++||.-|+-+++-|.
T Consensus 81 ~~~LeEENNlLklKievLL 99 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3468889988888887553
No 122
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=30.57 E-value=3.1e+02 Score=22.96 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.++-|..++..|++.|..|.+++.-|+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888889999999999999999998874
No 123
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=30.38 E-value=2.8e+02 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.089 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-+--++.++.-|...|.+|.++++.|..
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777776654
No 124
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.37 E-value=3.8e+02 Score=23.62 Aligned_cols=53 Identities=8% Similarity=0.133 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
|+-...+.|+....++=..|...|..=++++.+.+.++...+.|-..+.....
T Consensus 72 Pi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~ 124 (205)
T PRK06231 72 PTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQAN 124 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777666666555444433
No 125
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.25 E-value=1.8e+02 Score=29.50 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
+...++|.+++.|+.||..|+.+++.+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566777777777887777776433
No 126
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=29.85 E-value=29 Score=25.42 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.2
Q ss_pred ccccHHHHHhhhcc
Q 025985 78 EMMTLEDFLAKAGA 91 (245)
Q Consensus 78 geMTLEDFLvkAGv 91 (245)
=.||.|||+.+++.
T Consensus 39 c~ls~edF~~~~p~ 52 (66)
T cd08203 39 CLLTKEDFLRRAPS 52 (66)
T ss_pred HhCCHHHHHHHcCC
Confidence 36999999999976
No 127
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.72 E-value=70 Score=32.38 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Q 025985 194 LAVRLEEENEQLLKEKAERTKER---YKQLMEKV 224 (245)
Q Consensus 194 ~v~~Le~EN~~L~~~~~~l~~~~---~~~l~~~~ 224 (245)
.++.|++.|+.|+.-++++++.+ .+..|+.+
T Consensus 52 ~le~l~qqNEdLk~~~e~lr~~~~~d~~~am~~v 85 (580)
T KOG3705|consen 52 ALEKLQQQNEDLKSILEKLRQERNDDHKKAMEQV 85 (580)
T ss_pred HHHHHHHhhHHHHHHHHHHhcccccchhhHHHHH
Confidence 35567888888888888777655 24445543
No 128
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.62 E-value=1.7e+02 Score=26.29 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENE 203 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~ 203 (245)
++...+|+.++..|+.++.
T Consensus 75 ~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 75 REENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555
No 129
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=29.62 E-value=46 Score=23.75 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQL 205 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L 205 (245)
++.|||.+|..|++-|..|
T Consensus 19 rv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDL 37 (48)
T ss_pred eHHHHHHHHHHHHHHhHHH
Confidence 3456666666555555544
No 130
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=29.50 E-value=3.1e+02 Score=22.30 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
+.+++.++..|...|.-|-.++
T Consensus 107 ~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 107 LSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 131
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=29.07 E-value=3.5e+02 Score=24.11 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=37.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 170 MIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERY 217 (245)
Q Consensus 170 ~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~ 217 (245)
+++-|.|+..-|.+=+.|..+||.+=..|+......+.++..|.+++.
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~ 165 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNA 165 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666677777888899999888999888888888888876554
No 132
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.86 E-value=2.5e+02 Score=23.46 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.||.++..|+..-..|..++.+|+.
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 133
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=28.45 E-value=31 Score=25.57 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=12.6
Q ss_pred ccccHHHHHhhhccc
Q 025985 78 EMMTLEDFLAKAGAV 92 (245)
Q Consensus 78 geMTLEDFLvkAGvv 92 (245)
=.||.|||+.+++..
T Consensus 41 C~ms~edF~~~~p~~ 55 (68)
T cd08757 41 CSMTEEEFREAAGSY 55 (68)
T ss_pred HcCCHHHHHHHcCCc
Confidence 369999999998763
No 134
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.05 E-value=1.3e+02 Score=29.67 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKEKAERTKER 216 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~ 216 (245)
.|-|..++-||.-+.++++||..|.-++.++.++.
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667778899999999999999999888887643
No 135
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.91 E-value=3.5e+02 Score=28.66 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 025985 193 SLAVRLEEENEQLLKE 208 (245)
Q Consensus 193 ~~v~~Le~EN~~L~~~ 208 (245)
.+..+||.|..+|+.+
T Consensus 545 ~r~~~lE~E~~~lr~e 560 (697)
T PF09726_consen 545 QRRRQLESELKKLRRE 560 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.87 E-value=1.5e+02 Score=27.19 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
-+.+|..++..|+.|..+|+-+++++.- +.+++.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~-~l~~~~ 88 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQY-QLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHH
Confidence 3568899999999999999999998764 455544
No 137
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=27.84 E-value=92 Score=26.00 Aligned_cols=39 Identities=33% Similarity=0.274 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVV 228 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~~~~~ 228 (245)
=|-+|...-|..+..|++||--|+. .+++++|.+.+...
T Consensus 76 ~KAAy~afeE~~Lp~lK~E~PgLrl-------sQ~kq~l~K~w~KS 114 (122)
T PF06244_consen 76 MKAAYKAFEERRLPELKEENPGLRL-------SQYKQMLWKEWQKS 114 (122)
T ss_pred HHHHHHHHHHHHhHHHHhhCCCchH-------HHHHHHHHHHHhcC
Confidence 3678999999999999999987765 25666777665443
No 138
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=27.67 E-value=1.7e+02 Score=28.00 Aligned_cols=42 Identities=10% Similarity=0.190 Sum_probs=21.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 168 RRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 168 rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
+.+.+.+......-++|+.|+..|..++..|.+--.-+...+
T Consensus 111 ~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 111 KELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555555555554444444433
No 139
>PRK10963 hypothetical protein; Provisional
Probab=27.62 E-value=1.5e+02 Score=26.31 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=14.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLE---EENEQLLKEKAERT 213 (245)
Q Consensus 190 eLE~~v~~Le---~EN~~L~~~~~~l~ 213 (245)
.||.++..|- .+|+.+-.++..+.
T Consensus 55 ~Le~~l~~Li~~A~~Ne~l~~~~~~l~ 81 (223)
T PRK10963 55 VLEEEMTLLMEQAIANEDLFYRLLPLQ 81 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444 67777777666554
No 140
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=27.21 E-value=1.5e+02 Score=28.54 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=5.6
Q ss_pred cccHHHHHh
Q 025985 79 MMTLEDFLA 87 (245)
Q Consensus 79 eMTLEDFLv 87 (245)
.|..++|+.
T Consensus 60 ~~~~~eYv~ 68 (342)
T PF06632_consen 60 DMEVEEYVQ 68 (342)
T ss_dssp TS-HHHHHH
T ss_pred cCCHHHHHH
Confidence 477888853
No 141
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=27.18 E-value=2.6e+02 Score=25.15 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
-|++.+...+..|..||+|+..-+.++.+.-+++....|
T Consensus 71 ~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV~a~L 109 (193)
T PF12925_consen 71 FKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRVQAML 109 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888889999999999999999999988877765544
No 142
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=27.07 E-value=1e+02 Score=28.64 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
-+..+..++..|++||.+|+..+.
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445666778888899988888765
No 143
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=26.93 E-value=2.3e+02 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
.+++.++.+...+..|+.+|.+++++|
T Consensus 42 ~F~~kV~~qH~~~~~e~r~L~kKi~~l 68 (109)
T PF11690_consen 42 DFIDKVVDQHQRYCDERRKLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777
No 144
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=26.89 E-value=1.8e+02 Score=25.87 Aligned_cols=28 Identities=36% Similarity=0.405 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
|...||..+..|+.+...+++++++++.
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 145
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=26.63 E-value=1.5e+02 Score=24.00 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
.++.+...|..+|..|..++..|+..
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44455555666666666666666544
No 146
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.55 E-value=3.7e+02 Score=22.17 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
|+-...++|+.+..+.-..|.+.+..=.....+.+..+...+.|-..+..+.
T Consensus 31 Pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a 82 (141)
T PRK08476 31 PLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777776666655555666655555555544444333
No 147
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=26.44 E-value=3.9e+02 Score=28.53 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=6.2
Q ss_pred ccHHHHHhhhc
Q 025985 80 MTLEDFLAKAG 90 (245)
Q Consensus 80 MTLEDFLvkAG 90 (245)
..|-..+.|-|
T Consensus 420 tDLKnlFSKyG 430 (940)
T KOG4661|consen 420 TDLKNLFSKYG 430 (940)
T ss_pred hHHHHHHHHhc
Confidence 34555566665
No 148
>PF14645 Chibby: Chibby family
Probab=26.38 E-value=94 Score=25.47 Aligned_cols=20 Identities=30% Similarity=0.149 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025985 193 SLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 193 ~~v~~Le~EN~~L~~~~~~l 212 (245)
.+..+|++||.-|+-+++-|
T Consensus 78 ~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 78 KENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456677777776666544
No 149
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.34 E-value=4.7e+02 Score=23.34 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.|...|+..|..++++...|..++.++.
T Consensus 70 ~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 70 VYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 150
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.31 E-value=2.2e+02 Score=26.83 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 025985 204 QLLKEKA 210 (245)
Q Consensus 204 ~L~~~~~ 210 (245)
+|..++.
T Consensus 174 ~le~E~s 180 (290)
T COG4026 174 RLEVENS 180 (290)
T ss_pred HHHHHHH
Confidence 3333333
No 151
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=26.12 E-value=2.3e+02 Score=19.60 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=27.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 025985 164 QQRQRRMIKNRESAARSRERKQ---AYQVELESLAVRLEEENEQLLKE 208 (245)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~~v~~Le~EN~~L~~~ 208 (245)
.+|.+=-+.-+-|-.+.+.+-. ..+..|+.+...|..++..|..+
T Consensus 7 ~rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 7 ERRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444444445555554443 45778888888888888888764
No 152
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=26.08 E-value=5.9e+02 Score=26.69 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQAYQ 188 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKkay~ 188 (245)
...++++-.+-|+-|.|+|++-++-.
T Consensus 212 i~~~~~~~e~kr~Eaerk~~~~qEe~ 237 (591)
T KOG2412|consen 212 IRERKERSEEKREEAERKRRAHQEEL 237 (591)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 33444455566666777766655443
No 153
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.00 E-value=2.4e+02 Score=23.37 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=31.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
..+-|||-.= .-=|--+++|-++|...++||-.|+.+++-|-+
T Consensus 56 EEKaRlItQV-------LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 56 EEKARLITQV-------LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 4445666431 234556788889999999999999999887764
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.78 E-value=2.1e+02 Score=25.53 Aligned_cols=29 Identities=10% Similarity=-0.002 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+..+.+|+.+...|++++..++.++..++
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777666666666666665544
No 155
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.14 E-value=3.1e+02 Score=27.96 Aligned_cols=27 Identities=30% Similarity=0.218 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.++.|+.++.+|++||.+|+.....|+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788889999998887776654
No 156
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.08 E-value=3.7e+02 Score=21.73 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 172 KNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 172 kNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.||.+++-.++-...|-..|.. |.|+..|.+++..+..
T Consensus 57 QNRq~~~dr~ra~~D~~inl~a-----e~ei~~l~~~l~~l~~ 94 (108)
T PF06210_consen 57 QNRQAARDRLRAELDYQINLKA-----EQEIERLHRKLDALRE 94 (108)
T ss_pred hhHhHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHH
Confidence 4666666544444455444432 3344445444444443
No 157
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=25.02 E-value=5.2e+02 Score=23.42 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 161 KAAQQRQRRMIKNRESAARSRERKQA----YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKka----y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+...+|.||-+..+.++=.-+-+=-. +++..=.++..|++.|.+|..++.+|+.
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888888887777544433222 2333335667788888888888888764
No 158
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.61 E-value=2.6e+02 Score=22.97 Aligned_cols=47 Identities=28% Similarity=0.272 Sum_probs=20.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
.+.+++...-+.....-.|=+..+.++|.++..++..-..|..++..
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~ 105 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKS 105 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333444445555444444444444444443
No 159
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.52 E-value=3.8e+02 Score=21.62 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 174 RESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 174 ReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
||.|+...-=+|...+.|+.--..|++|-..-++++.++.
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333322233333333455555444
No 160
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.49 E-value=1.3e+02 Score=22.63 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
+.||+.++.-|+.|.++|+.++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888887765
No 161
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=24.48 E-value=4.2e+02 Score=29.63 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=42.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 166 RQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEK 223 (245)
Q Consensus 166 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~ 223 (245)
..-|-++||.--..++++...|-.++|.+-.+|++....|++-+.+...++.++|.+.
T Consensus 1029 ~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~ 1086 (1189)
T KOG1265|consen 1029 GRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKES 1086 (1189)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567887778888888888888888888888888877776666666666665543
No 162
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.22 E-value=1.9e+02 Score=29.90 Aligned_cols=27 Identities=37% Similarity=0.341 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.-||.++..|+.||.+|..++..+++
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445677788888888888888888775
No 163
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.17 E-value=1.9e+02 Score=29.36 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENE 203 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~ 203 (245)
-+.+||.++..|+.|.+
T Consensus 77 kasELEKqLaaLrqElq 93 (475)
T PRK13729 77 TAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666666555444
No 164
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=24.10 E-value=41 Score=25.68 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.5
Q ss_pred ccccHHHHHhhhccc
Q 025985 78 EMMTLEDFLAKAGAV 92 (245)
Q Consensus 78 geMTLEDFLvkAGvv 92 (245)
=.||.|||+.+|+..
T Consensus 43 C~LskedF~~~ap~~ 57 (75)
T cd08540 43 CKMTKDDFQRLTPSY 57 (75)
T ss_pred HhCCHHHHHHHcCCC
Confidence 369999999999754
No 165
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=24.08 E-value=41 Score=25.71 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=22.7
Q ss_pred cccchHHHHHHHHhcccc-cch-h-------hhccccccHHHHHhhhcc
Q 025985 52 AMKSVDDVWREIVSGEKK-EMK-E-------EAIDEMMTLEDFLAKAGA 91 (245)
Q Consensus 52 skKTVDEVWrdIq~~~~~-~~~-~-------~~~~geMTLEDFLvkAGv 91 (245)
..=|.+.|+.=++-..+. +.. . ...+=.||.|||+.+++.
T Consensus 11 ~~Ws~~~V~~WL~w~~~ef~L~~~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 11 YQWSPANVQKWLLWTEHQYRLPPPPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCCchhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 345677787766543211 000 0 011236999999999865
No 166
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.03 E-value=4.6e+02 Score=24.56 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 180 SRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 180 SR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+-.+-+..+++|+.++..|+.|...|..+..+.+.
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 33444556677777777777777777776665554
No 167
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.90 E-value=1.8e+02 Score=32.55 Aligned_cols=33 Identities=39% Similarity=0.339 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
..+...+++|+..+..|++||..|..++..|+.
T Consensus 526 e~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 526 ELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445566789999999999999999999998876
No 168
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.67 E-value=1.9e+02 Score=27.07 Aligned_cols=47 Identities=26% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCC
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVVPVVEKKRPP 234 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~~~~~~~~ep~ 234 (245)
++..--..+..|+++...|+.+++.|..... ..-+.+++-+-...||
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L~~~~~-~~Re~iF~dvll~rpK 240 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQLQAQAQ-DPREVIFADVLLRRPK 240 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHhhHHHhcCCCC
Confidence 3444445678899999999999999987655 4445555443333333
No 169
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.49 E-value=1.2e+02 Score=28.02 Aligned_cols=13 Identities=46% Similarity=0.378 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 025985 198 LEEENEQLLKEKA 210 (245)
Q Consensus 198 Le~EN~~L~~~~~ 210 (245)
|++||++|++++.
T Consensus 71 l~~EN~~Lr~e~~ 83 (283)
T TIGR00219 71 LEYENYKLRQELL 83 (283)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 170
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.44 E-value=2.1e+02 Score=22.05 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-.++|-.++..+..+...|..++.++..
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777766665
No 171
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.36 E-value=1.8e+02 Score=22.65 Aligned_cols=12 Identities=67% Similarity=0.772 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 025985 197 RLEEENEQLLKE 208 (245)
Q Consensus 197 ~Le~EN~~L~~~ 208 (245)
.|+.||++|+.+
T Consensus 50 aL~~eneqlk~e 61 (79)
T COG3074 50 ALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 172
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.23 E-value=1.9e+02 Score=25.40 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025985 196 VRLEEENEQLLKEKAER 212 (245)
Q Consensus 196 ~~Le~EN~~L~~~~~~l 212 (245)
..|..+|..|..++..|
T Consensus 114 ~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 114 ESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 173
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.22 E-value=1.6e+02 Score=24.43 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+|.+.+..|-+||..|+-+++.|+
T Consensus 26 ~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 26 GLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHhhHHHHhhHHHHH
Confidence 344444444455555555555444
No 174
>PRK04325 hypothetical protein; Provisional
Probab=23.14 E-value=3.3e+02 Score=20.45 Aligned_cols=19 Identities=26% Similarity=0.083 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQL 205 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L 205 (245)
.+.+||.++..++.-.+.|
T Consensus 10 Ri~~LE~klAfQE~tIe~L 28 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGL 28 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778887777666444443
No 175
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.14 E-value=3e+02 Score=21.70 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.++..+..|+..-..|..++.++++
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666677777776665
No 176
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=23.08 E-value=1.3e+02 Score=29.02 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
++++..++..|+.+..+|++++.++++
T Consensus 291 lDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 291 LDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445666777777777777777776654
No 177
>PLN02678 seryl-tRNA synthetase
Probab=23.02 E-value=3.3e+02 Score=27.27 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
+-.++|-.++..|.++...|..++.+++.+ +.+++.
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~-l~~~~~ 106 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAA-LDAKLK 106 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 445677778888888888888888887764 334443
No 178
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.02 E-value=3.8e+02 Score=23.57 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 171 IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 171 ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
..+-...+.-...++..+..|..++..+++++..++.++.++++.
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 179
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=23.01 E-value=66 Score=26.05 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=21.2
Q ss_pred cchHHHHHHHHhcccccchhhhccccccHHHHHhhhc
Q 025985 54 KSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAG 90 (245)
Q Consensus 54 KTVDEVWrdIq~~~~~~~~~~~~~geMTLEDFLvkAG 90 (245)
-.+..+|.+++..- ...+..+||+|++.+..
T Consensus 104 c~~~~~~~~~~~~~------~~~L~~~TL~dl~~~~~ 134 (135)
T TIGR02010 104 CLTHDLWADLSKHI------RDYLESISLADLVNQQN 134 (135)
T ss_pred ccHHHHHHHHHHHH------HHHHhcCcHHHHHhhcc
Confidence 34678898886541 22367899999986543
No 180
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.63 E-value=4.2e+02 Score=23.36 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 180 SRERKQAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 180 SR~RKkay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
...++-..+.+||.++..|+.+...+....+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777777766666555544433
No 181
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.56 E-value=3.3e+02 Score=20.31 Aligned_cols=19 Identities=37% Similarity=0.137 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQ 204 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~ 204 (245)
+++.+||.++..++.-.+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~ 26 (72)
T PRK02793 8 ARLAELESRLAFQEITIEE 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777776665544333
No 182
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.46 E-value=3.4e+02 Score=20.30 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025985 191 LESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 191 LE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
++.++..|+..-..+..++.+++
T Consensus 74 ~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 74 LEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 183
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=22.04 E-value=4.2e+02 Score=21.21 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
|+-...++|+.++..+=..|...+..=.++..+.+.++...+.+-..+..+...
T Consensus 29 pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~ 82 (140)
T PRK07353 29 PVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEA 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666666666555554444333
No 184
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.01 E-value=2.8e+02 Score=21.71 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.=|..+|+.|+++|..|..+..
T Consensus 21 ~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555433
No 185
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=21.78 E-value=4.7e+02 Score=26.41 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHH
Q 025985 163 AQQRQRRMIKNRESAARSRERKQ---AYQVELES 193 (245)
Q Consensus 163 ~~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~ 193 (245)
..+.+.|..+-.+.++|.-.+-+ +|...||+
T Consensus 298 ~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~ 331 (460)
T KOG1363|consen 298 ERRLQMRRSEQDEREARLALEQEQDDEYQASLEA 331 (460)
T ss_pred hHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444455555666666655555 67777765
No 186
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=21.75 E-value=48 Score=26.13 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=23.8
Q ss_pred cCcccchHHHHHHHHhcccc------cchhhh----ccccccHHHHHhhhcc
Q 025985 50 AGAMKSVDDVWREIVSGEKK------EMKEEA----IDEMMTLEDFLAKAGA 91 (245)
Q Consensus 50 ~lskKTVDEVWrdIq~~~~~------~~~~~~----~~geMTLEDFLvkAGv 91 (245)
...-=|.+.||.=++-..+. ....-. .+=.||.|||+.++..
T Consensus 18 DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~ 69 (89)
T cd08534 18 DPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPK 69 (89)
T ss_pred ChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCC
Confidence 34455777887766533211 011101 1236999999999874
No 187
>PRK00736 hypothetical protein; Provisional
Probab=21.72 E-value=3.4e+02 Score=20.06 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQL 205 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L 205 (245)
+++.+||.++..++.-.+.|
T Consensus 5 ~Ri~~LE~klafqe~tie~L 24 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEEL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34778887776666444333
No 188
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=21.63 E-value=5.2e+02 Score=22.16 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=40.9
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.|+-...++|..+....=+.|.+.|..=.....+.+.++...+.|-..+..+-.+..+
T Consensus 27 kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 27 KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667778888888888888888888888888888777777766665554444333
No 189
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.58 E-value=3.6e+02 Score=20.95 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
+.-|.-+++.|+++|..|..+..+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~ 43 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHH
Confidence 444556666666666655555443
No 190
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.52 E-value=1.6e+02 Score=25.77 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025985 195 AVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 195 v~~Le~EN~~L~~~~~~l~~ 214 (245)
-+.|+.++++|+.++.+|++
T Consensus 26 KE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888876
No 191
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.34 E-value=95 Score=31.56 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
.|++|+.|+..|+++...|.+++...
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 45555555555555555555544433
No 192
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.19 E-value=5.2e+02 Score=21.98 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208 (245)
Q Consensus 159 ~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~ 208 (245)
+....++|+.+..+.-+.|.+.+..=...+.+.+.++...+.+-..+..+
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777766666666676666666555554443
No 193
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.16 E-value=1.9e+02 Score=26.38 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
..|+.|+++||.++..|-.--..|-++-.+|-
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa 56 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHRKELA 56 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999888877777766655553
No 194
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.13 E-value=2.6e+02 Score=23.41 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
.-|..|..++..|+.+...+..++.++
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555554444
No 195
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.94 E-value=7.2e+02 Score=25.82 Aligned_cols=50 Identities=28% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.+.+..+.+...........-+..+..|+..+...++++..|..+..++.
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666666666555555443
No 196
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=20.68 E-value=53 Score=25.42 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=12.3
Q ss_pred cccHHHHHhhhccc
Q 025985 79 MMTLEDFLAKAGAV 92 (245)
Q Consensus 79 eMTLEDFLvkAGvv 92 (245)
.||.|||+-+||..
T Consensus 47 ~ms~eeF~~~~p~~ 60 (78)
T cd08538 47 SMTQEEFIEAAGIC 60 (78)
T ss_pred cCCHHHHHHHcccc
Confidence 69999999999854
No 197
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=20.58 E-value=52 Score=24.57 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=11.6
Q ss_pred ccccHHHHHhhhcc
Q 025985 78 EMMTLEDFLAKAGA 91 (245)
Q Consensus 78 geMTLEDFLvkAGv 91 (245)
=.||.|||+.+++.
T Consensus 40 C~ls~edF~~r~p~ 53 (68)
T cd08535 40 CLLTKEDFRYRSPH 53 (68)
T ss_pred hcCCHHHHhhhCCC
Confidence 36999999998763
No 198
>smart00338 BRLZ basic region leucin zipper.
Probab=20.48 E-value=3.2e+02 Score=19.31 Aligned_cols=55 Identities=27% Similarity=0.308 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 161 KAAQQRQRRMIKNRESAARSRERKQ---AYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
+...++.+-.+.-+-|-.+-+..-. ..+..|+.+...|..++..|..++..|..+
T Consensus 5 k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 5 KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333 345677777788888888888887777653
No 199
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=20.46 E-value=5.6e+02 Score=22.12 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL 206 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~ 206 (245)
.++....++|+.+...+-..|.+.+..=.+...+.|.++..-+.|-.+++
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~ 82 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLK 82 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777776655555555555544444444443
No 200
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=20.32 E-value=4.7e+02 Score=21.11 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLK 207 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~ 207 (245)
|+-...+.|+.+..++=+.|...+..=+....+.+.++...+.+-..+..
T Consensus 19 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~ 68 (147)
T TIGR01144 19 PLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIE 68 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777777777777777777777766666655555443
No 201
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.31 E-value=1.2e+02 Score=25.22 Aligned_cols=26 Identities=27% Similarity=0.143 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
+.+.+|=.+-..|+-||..|++++.+
T Consensus 29 ~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 29 QHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34567767777788888888888876
No 202
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=20.15 E-value=55 Score=25.09 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=24.0
Q ss_pred CcccchHHHHHHHHhcccc------cchh----hhccccccHHHHHhhhc
Q 025985 51 GAMKSVDDVWREIVSGEKK------EMKE----EAIDEMMTLEDFLAKAG 90 (245)
Q Consensus 51 lskKTVDEVWrdIq~~~~~------~~~~----~~~~geMTLEDFLvkAG 90 (245)
..-=|.++|+.=|+-..+. .... ...+=.||.|||+.+++
T Consensus 17 P~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p 66 (82)
T smart00251 17 PQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP 66 (82)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC
Confidence 3456788888777643211 0100 01123699999999997
No 203
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.10 E-value=3.3e+02 Score=22.61 Aligned_cols=15 Identities=47% Similarity=0.457 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 025985 195 AVRLEEENEQLLKEK 209 (245)
Q Consensus 195 v~~Le~EN~~L~~~~ 209 (245)
+..|++||.....++
T Consensus 106 i~~L~~E~~~~~~el 120 (144)
T PF11221_consen 106 IKELEEENEEAEEEL 120 (144)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
Done!