Query 025985
Match_columns 245
No_of_seqs 205 out of 621
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 22:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 1.9E-15 6.4E-20 107.4 7.1 50 165-214 1-50 (55)
2 2wt7_A Proto-oncogene protein 99.4 1.5E-12 5.3E-17 94.1 9.2 58 164-222 1-58 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 7.5E-12 2.6E-16 89.7 9.2 59 165-224 1-59 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 2.1E-11 7.1E-16 88.6 7.4 44 171-214 15-58 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 1E-10 3.6E-15 84.0 7.8 50 166-215 2-51 (62)
6 1ci6_A Transcription factor AT 98.9 4.3E-09 1.5E-13 76.2 7.9 50 165-214 2-51 (63)
7 1gu4_A CAAT/enhancer binding p 98.7 5E-08 1.7E-12 73.8 8.5 63 159-222 9-71 (78)
8 1hjb_A Ccaat/enhancer binding 98.7 9.9E-08 3.4E-12 73.5 9.0 65 159-224 9-73 (87)
9 1gd2_E Transcription factor PA 98.4 1.3E-06 4.4E-11 64.8 8.3 48 167-214 10-57 (70)
10 3a5t_A Transcription factor MA 98.3 8.5E-08 2.9E-12 76.5 0.5 58 157-214 29-86 (107)
11 2wt7_B Transcription factor MA 97.8 0.0001 3.5E-09 57.1 9.4 57 158-214 20-76 (90)
12 2oqq_A Transcription factor HY 96.6 0.0041 1.4E-07 42.0 5.4 39 185-225 2-40 (42)
13 1skn_P DNA-binding domain of S 95.7 0.0056 1.9E-07 47.5 2.7 37 157-193 54-90 (92)
14 3m48_A General control protein 91.7 0.21 7E-06 32.1 3.7 27 188-214 2-28 (33)
15 2c9l_Y EB1, zebra, BZLF1 trans 91.2 1.2 4.2E-05 31.7 7.7 40 171-210 7-46 (63)
16 2oxj_A Hybrid alpha/beta pepti 91.1 0.3 1E-05 31.5 4.1 28 187-214 2-29 (34)
17 1kd8_B GABH BLL, GCN4 acid bas 89.9 0.43 1.5E-05 31.1 4.1 28 187-214 2-29 (36)
18 3c3f_A Alpha/beta peptide with 88.5 0.64 2.2E-05 29.9 4.1 28 187-214 2-29 (34)
19 1kd8_A GABH AIV, GCN4 acid bas 88.1 0.47 1.6E-05 30.9 3.3 28 187-214 2-29 (36)
20 1gmj_A ATPase inhibitor; coile 87.4 4 0.00014 31.1 8.6 66 149-214 12-79 (84)
21 3c3g_A Alpha/beta peptide with 87.0 1.2 4.1E-05 28.5 4.7 27 188-214 2-28 (33)
22 2kz5_A Transcription factor NF 86.1 0.069 2.4E-06 41.3 -1.8 30 157-186 58-87 (91)
23 1uo4_A General control protein 86.0 1 3.4E-05 29.1 3.9 28 187-214 2-29 (34)
24 2bni_A General control protein 85.9 1 3.5E-05 29.0 3.9 28 187-214 2-29 (34)
25 3s9g_A Protein hexim1; cyclin 85.2 3.4 0.00012 32.5 7.4 29 185-213 64-92 (104)
26 1nlw_A MAD protein, MAX dimeri 84.8 1.9 6.4E-05 31.9 5.6 32 184-215 45-76 (80)
27 1am9_A Srebp-1A, protein (ster 84.6 1.5 5.2E-05 32.3 5.0 29 185-213 49-77 (82)
28 1nkp_B MAX protein, MYC proto- 84.5 1.7 5.7E-05 31.9 5.2 31 185-215 46-76 (83)
29 2wq1_A General control protein 84.3 2 6.8E-05 27.5 4.7 27 188-214 2-28 (33)
30 2hy6_A General control protein 83.7 1.5 5E-05 28.3 3.9 28 187-214 2-29 (34)
31 1dip_A Delta-sleep-inducing pe 82.7 1.3 4.6E-05 33.1 4.0 24 185-208 21-44 (78)
32 1deb_A APC protein, adenomatou 79.3 3.5 0.00012 28.9 4.8 27 188-214 5-31 (54)
33 1nkp_A C-MYC, MYC proto-oncoge 79.2 4.3 0.00015 30.4 5.9 30 185-214 51-80 (88)
34 2wuj_A Septum site-determining 75.8 2.9 9.9E-05 29.1 3.7 29 186-214 27-55 (57)
35 1p9i_A Cortexillin I/GCN4 hybr 75.8 3.7 0.00013 25.4 3.7 26 189-214 2-27 (31)
36 2r2v_A GCN4 leucine zipper; co 73.9 6.6 0.00023 25.2 4.7 28 187-214 2-29 (34)
37 1fmh_A General control protein 72.6 7.1 0.00024 24.5 4.5 27 188-214 3-29 (33)
38 2oa5_A Hypothetical protein BQ 72.6 2 6.9E-05 34.2 2.5 24 187-210 9-32 (110)
39 3plt_A Sphingolipid long chain 70.8 16 0.00056 32.3 8.2 34 187-220 132-165 (234)
40 3he5_A Synzip1; heterodimeric 70.4 5.3 0.00018 27.0 3.8 23 187-209 4-26 (49)
41 1hlo_A Protein (transcription 69.8 3.1 0.00011 30.3 2.9 24 185-208 56-79 (80)
42 2oqq_A Transcription factor HY 69.7 11 0.00037 25.3 5.2 24 186-209 17-40 (42)
43 1zme_C Proline utilization tra 68.6 3.6 0.00012 28.2 2.9 26 185-210 43-68 (70)
44 3w03_C DNA repair protein XRCC 67.1 8 0.00027 33.1 5.3 27 188-214 154-180 (184)
45 2yy0_A C-MYC-binding protein; 66.9 14 0.00047 25.4 5.5 21 194-214 20-40 (53)
46 2dfs_A Myosin-5A; myosin-V, in 62.6 32 0.0011 36.1 9.8 28 186-213 1016-1043(1080)
47 1go4_E MAD1 (mitotic arrest de 59.8 15 0.00052 28.6 5.2 29 187-215 13-41 (100)
48 3w03_C DNA repair protein XRCC 59.1 22 0.00076 30.3 6.6 38 185-223 144-181 (184)
49 2yy0_A C-MYC-binding protein; 57.8 19 0.00064 24.8 4.8 21 189-209 29-49 (53)
50 3oja_A Leucine-rich immune mol 57.5 46 0.0016 30.5 9.0 36 179-214 428-463 (487)
51 2er8_A Regulatory protein Leu3 53.2 7.5 0.00026 26.8 2.3 22 185-206 48-69 (72)
52 3nmd_A CGMP dependent protein 53.1 19 0.00066 26.5 4.5 30 182-211 36-65 (72)
53 1nkp_B MAX protein, MYC proto- 50.8 14 0.00049 26.7 3.5 22 190-211 58-79 (83)
54 2lz1_A Nuclear factor erythroi 46.2 0.49 1.7E-05 36.5 -5.2 29 157-185 58-86 (90)
55 3he4_B Synzip5; heterodimeric 46.0 46 0.0016 22.1 5.0 29 185-213 9-37 (46)
56 2p22_D Hypothetical 12.0 kDa p 45.9 5.3 0.00018 30.1 0.5 10 1-10 1-10 (79)
57 1zxa_A CGMP-dependent protein 45.8 43 0.0015 24.3 5.3 30 183-212 22-51 (67)
58 3q4f_C DNA repair protein XRCC 45.2 21 0.00071 30.7 4.1 23 187-209 162-184 (186)
59 3oja_B Anopheles plasmodium-re 45.0 1.2E+02 0.004 28.3 9.7 28 185-212 536-563 (597)
60 1nkp_A C-MYC, MYC proto-oncoge 43.9 35 0.0012 25.3 4.8 24 190-213 63-86 (88)
61 1ci6_A Transcription factor AT 43.0 62 0.0021 22.5 5.8 27 187-213 31-57 (63)
62 1gd2_E Transcription factor PA 41.8 40 0.0014 24.4 4.7 30 186-215 36-65 (70)
63 2w6b_A RHO guanine nucleotide 40.4 73 0.0025 22.4 5.6 36 190-225 14-51 (56)
64 3oja_B Anopheles plasmodium-re 39.9 1.8E+02 0.0061 27.0 10.1 26 189-214 533-558 (597)
65 3ra3_B P2F; coiled coil domain 38.7 22 0.00075 21.5 2.3 19 195-213 2-20 (28)
66 1gk6_A Vimentin; intermediate 38.5 44 0.0015 23.1 4.3 32 190-222 4-35 (59)
67 4ati_A MITF, microphthalmia-as 38.4 20 0.00067 28.1 2.8 41 161-201 32-89 (118)
68 3mq7_A Bone marrow stromal ant 38.4 1.2E+02 0.0042 24.3 7.4 30 185-214 70-99 (121)
69 1dip_A Delta-sleep-inducing pe 37.9 17 0.00058 27.2 2.1 27 188-214 17-43 (78)
70 4af3_D Incenp, inner centromer 37.4 5.2 0.00018 29.1 -0.7 12 234-245 54-65 (71)
71 1uii_A Geminin; human, DNA rep 37.0 43 0.0015 25.3 4.3 24 190-213 50-73 (83)
72 2aze_A Transcription factor DP 36.1 79 0.0027 26.3 6.2 18 182-199 22-39 (155)
73 1t2k_D Cyclic-AMP-dependent tr 35.8 75 0.0026 21.7 5.2 28 187-214 30-57 (61)
74 4ath_A MITF, microphthalmia-as 35.3 73 0.0025 23.9 5.3 30 186-215 49-78 (83)
75 3nmd_A CGMP dependent protein 35.3 1.3E+02 0.0045 22.0 6.8 32 183-214 30-61 (72)
76 3s4r_A Vimentin; alpha-helix, 35.1 58 0.002 24.5 4.8 23 193-215 23-45 (93)
77 3a2a_A Voltage-gated hydrogen 34.2 97 0.0033 21.9 5.4 29 186-214 18-46 (58)
78 1nlw_A MAD protein, MAX dimeri 33.8 44 0.0015 24.4 3.9 21 190-210 58-78 (80)
79 1jnm_A Proto-oncogene C-JUN; B 32.4 1.2E+02 0.0041 20.7 6.6 51 164-214 4-57 (62)
80 2zvf_A Alanyl-tRNA synthetase; 32.1 70 0.0024 25.3 5.2 35 189-223 28-62 (171)
81 2xv5_A Lamin-A/C; structural p 32.1 1.2E+02 0.0039 22.1 5.9 33 179-211 5-37 (74)
82 2jee_A YIIU; FTSZ, septum, coi 31.4 1.1E+02 0.0037 22.9 5.7 17 191-207 25-41 (81)
83 1wt6_A Myotonin-protein kinase 31.1 1.7E+02 0.0057 22.0 7.6 46 170-215 22-67 (81)
84 2xv5_A Lamin-A/C; structural p 30.9 1.3E+02 0.0046 21.7 6.0 31 190-221 9-39 (74)
85 1ik9_A DNA repair protein XRCC 30.7 88 0.003 26.8 5.9 11 79-89 60-70 (213)
86 2wvr_A Geminin; DNA replicatio 30.3 1.1E+02 0.0038 26.6 6.4 38 186-225 122-159 (209)
87 1a93_B MAX protein, coiled coi 29.7 89 0.003 19.9 4.2 21 190-210 11-31 (34)
88 3m9b_A Proteasome-associated A 29.5 50 0.0017 29.5 4.2 30 185-214 60-89 (251)
89 1sv0_A ETS DNA-binding protein 29.5 18 0.00062 26.9 1.1 43 49-91 8-60 (85)
90 3o0z_A RHO-associated protein 29.5 2.5E+02 0.0086 23.5 10.0 48 166-213 70-117 (168)
91 1r4g_A RNA polymerase alpha su 28.9 43 0.0015 23.2 2.8 15 178-192 15-29 (53)
92 3haj_A Human pacsin2 F-BAR; pa 28.9 2.3E+02 0.008 26.3 8.9 62 161-222 185-246 (486)
93 2jee_A YIIU; FTSZ, septum, coi 28.7 1.4E+02 0.0047 22.3 5.9 25 198-223 53-77 (81)
94 3aco_A Pacsin2, protein kinase 28.3 3E+02 0.01 24.0 9.3 61 161-221 192-252 (350)
95 1hjb_A Ccaat/enhancer binding 28.2 1.9E+02 0.0064 21.6 9.0 65 150-214 4-71 (87)
96 4dzo_A Mitotic spindle assembl 27.7 1.2E+02 0.0042 23.9 5.8 37 187-224 5-41 (123)
97 3a2a_A Voltage-gated hydrogen 27.6 73 0.0025 22.5 3.9 22 192-213 10-31 (58)
98 1wlq_A Geminin; coiled-coil; 2 26.6 1.6E+02 0.0054 22.2 5.9 25 186-210 45-69 (83)
99 1x66_A Friend leukemia integra 26.6 21 0.00071 27.3 1.0 46 47-92 20-76 (98)
100 2dkx_A SAM pointed domain-cont 26.4 22 0.00075 27.0 1.1 13 79-91 62-74 (96)
101 1uii_A Geminin; human, DNA rep 26.4 1.1E+02 0.0038 23.0 5.0 27 185-211 52-78 (83)
102 2wt7_B Transcription factor MA 26.2 1E+02 0.0035 23.4 4.8 26 189-214 58-83 (90)
103 2jws_A GA88; evolution, foldin 26.2 22 0.00077 25.1 1.1 10 52-61 35-44 (56)
104 1x8y_A Lamin A/C; structural p 25.7 2E+02 0.0067 21.0 7.6 35 187-222 29-63 (86)
105 1kd8_A GABH AIV, GCN4 acid bas 24.3 1.4E+02 0.0049 19.2 4.5 24 187-210 9-32 (36)
106 3m91_A Proteasome-associated A 24.2 1.7E+02 0.0059 19.9 6.4 26 189-214 12-37 (51)
107 3m9b_A Proteasome-associated A 24.1 97 0.0033 27.6 5.0 34 188-222 56-89 (251)
108 2zxx_A Geminin; coiled-coil, c 23.9 1.5E+02 0.0052 22.0 5.3 28 186-213 41-68 (79)
109 3he4_A Synzip6; heterodimeric 23.9 1.1E+02 0.0037 21.0 4.1 25 190-214 21-45 (56)
110 4etp_A Kinesin-like protein KA 23.8 99 0.0034 28.6 5.3 18 190-207 21-38 (403)
111 2ve7_C Kinetochore protein NUF 23.7 56 0.0019 28.6 3.4 42 174-215 136-177 (250)
112 2xdj_A Uncharacterized protein 23.6 2.2E+02 0.0077 21.0 10.0 36 182-217 23-58 (83)
113 2j5u_A MREC protein; bacterial 23.4 79 0.0027 27.4 4.3 16 193-208 43-58 (255)
114 1hwt_C Protein (heme activator 23.4 32 0.0011 23.9 1.5 22 184-205 56-77 (81)
115 3a7p_A Autophagy protein 16; c 23.3 1.4E+02 0.0046 24.9 5.4 11 200-210 110-120 (152)
116 2ve7_A Kinetochore protein HEC 23.1 1.4E+02 0.0048 26.7 6.0 28 186-213 185-212 (315)
117 3mq9_A Bone marrow stromal ant 23.1 1.5E+02 0.005 27.0 6.2 36 178-213 431-470 (471)
118 1gk7_A Vimentin; intermediate 23.1 62 0.0021 20.9 2.7 18 193-210 20-37 (39)
119 4dzn_A Coiled-coil peptide CC- 22.8 1.4E+02 0.0049 18.5 4.7 26 189-214 5-30 (33)
120 1iq3_A Ralbp1-interacting prot 22.5 53 0.0018 24.4 2.6 33 51-92 53-85 (110)
121 1sxe_A Transcriptional regulat 22.4 25 0.00087 26.7 0.8 46 47-92 23-79 (97)
122 3tnu_B Keratin, type II cytosk 22.2 2.7E+02 0.0093 21.4 7.9 34 188-222 77-110 (129)
123 1q87_A 39 kDa initiator bindin 22.2 47 0.0016 29.2 2.5 30 52-90 35-64 (221)
124 2xdj_A Uncharacterized protein 22.0 2.3E+02 0.0078 20.9 6.0 36 186-222 20-55 (83)
125 3coq_A Regulatory protein GAL4 21.8 89 0.003 21.8 3.6 21 186-206 45-65 (89)
126 1sxd_A GA repeat binding prote 21.7 31 0.0011 26.0 1.1 42 49-90 21-72 (91)
127 2wg5_A General control protein 21.5 87 0.003 23.9 3.7 25 189-213 10-34 (109)
128 2wvr_A Geminin; DNA replicatio 21.3 1.8E+02 0.0063 25.3 6.1 25 189-213 118-142 (209)
129 2jv3_A ETS1 proto-oncogene; ET 21.2 29 0.001 27.0 0.9 46 47-92 37-92 (110)
130 3tnu_A Keratin, type I cytoske 21.1 2.9E+02 0.01 21.3 7.9 35 187-222 78-112 (131)
131 2xus_A Breast cancer metastasi 21.0 2E+02 0.007 19.5 5.4 23 182-208 6-28 (49)
132 4etp_A Kinesin-like protein KA 20.9 2.1E+02 0.0072 26.4 6.9 15 184-198 22-36 (403)
133 3he4_B Synzip5; heterodimeric 20.9 1.7E+02 0.0059 19.3 4.5 26 188-213 5-30 (46)
134 2ytu_A Friend leukemia integra 20.7 33 0.0011 27.6 1.2 46 47-92 34-90 (128)
135 2e8p_A ELF3 protein; cell-free 20.7 34 0.0012 26.0 1.2 45 48-92 21-77 (92)
136 3s4r_A Vimentin; alpha-helix, 20.4 2.7E+02 0.0092 20.7 6.5 33 182-214 52-84 (93)
137 3pmr_A Amyloid-like protein 1; 20.2 2.6E+02 0.0089 24.4 6.9 39 183-221 66-104 (219)
138 3oja_A Leucine-rich immune mol 20.0 4.9E+02 0.017 23.6 10.4 44 171-214 427-470 (487)
139 3ol1_A Vimentin; structural ge 20.0 1.6E+02 0.0054 22.8 5.0 10 162-171 20-29 (119)
140 3v86_A De novo design helix; c 20.0 1.1E+02 0.0039 18.2 3.1 21 190-210 4-24 (27)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.59 E-value=1.9e-15 Score=107.36 Aligned_cols=50 Identities=36% Similarity=0.542 Sum_probs=47.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
|+++||++||+||++||.|||+|+++||.+|..|+.||..|+.++..|.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998764
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.39 E-value=1.5e-12 Score=94.14 Aligned_cols=58 Identities=28% Similarity=0.339 Sum_probs=52.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
+||++|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|.. ++.+|..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~-e~~~Lk~ 58 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK-EKEKLEF 58 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 479999999999999999999999999999999999999999999998875 4444443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.32 E-value=7.5e-12 Score=89.71 Aligned_cols=59 Identities=29% Similarity=0.363 Sum_probs=52.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
||++|+++||++|++||.||++|+.+||.+|..|+.+|..|..++..|.. +..+|-..+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~-e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN-EVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999886 455554443
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.23 E-value=2.1e-11 Score=88.63 Aligned_cols=44 Identities=36% Similarity=0.336 Sum_probs=41.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 171 IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 171 ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+||+||+|||.||++|+.+||.+|..|+.+|..|..++..|++
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999998875
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.15 E-value=1e-10 Score=84.05 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=46.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 166 RQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 166 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
+.+|..+||++|++||.||++|+.+||.+|..|+.+|..|..++..|..+
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999988763
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.91 E-value=4.3e-09 Score=76.19 Aligned_cols=50 Identities=30% Similarity=0.409 Sum_probs=43.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
|+.+++.+||.+|+|||.||++++.+|+.++..|+.+|..|+.++..|..
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999986
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.71 E-value=5e-08 Score=73.76 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 159 ~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
+|+.++.-..|..+|.++|++||.+++....+++.++..|+.||..|+.++..|.+ ++..|-.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~-E~~~Lr~ 71 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-ELSTLRN 71 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34555555666788999999999999999999999999999999999999998876 4444443
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.67 E-value=9.9e-08 Score=73.48 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=54.1
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 159 ~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
+|+.+++-..|..+|.++|++||.+++....+++.++..|+.||..|+.+++.|.+ +...|-..+
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~-E~~~Lr~ll 73 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-ELSTLRNLF 73 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35555666677788999999999999999999999999999999999999999886 455554444
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.39 E-value=1.3e-06 Score=64.81 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=42.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 167 QRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 167 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+|+..||.|++..|.||++|+.+||.+|..|+.+|..|..++..|+.
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999888777777766654
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.32 E-value=8.5e-08 Score=76.45 Aligned_cols=58 Identities=29% Similarity=0.345 Sum_probs=47.0
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
...+....|.+||..|||.+|+.||.||.+.+.+||.++..|..+.+.|..++..+.+
T Consensus 29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~ 86 (107)
T 3a5t_A 29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL 86 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHH
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999997776666666666665555543
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.84 E-value=0.0001 Score=57.07 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=49.7
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 158 ~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
..+....|..||-.|||..|+-||.||-....+||.++..|..+-+.|+.++..+.+
T Consensus 20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~ 76 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999988888888888888877764
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0041 Score=41.95 Aligned_cols=39 Identities=28% Similarity=0.429 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVV 225 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~~ 225 (245)
|+|+.+||.++..|+..|.+|..++..|..+ ++.+.+++
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~E--N~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNE--NQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHh
Confidence 6899999999999999999999999999753 44455443
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.68 E-value=0.0056 Score=47.50 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~ 193 (245)
........+..||..|||..|++||+||-+.+.+|+.
T Consensus 54 s~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 54 SEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 4455678899999999999999999999999888764
No 14
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.67 E-value=0.21 Score=32.08 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 578999999999999999999997764
No 15
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=91.21 E-value=1.2 Score=31.71 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 171 IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 171 ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
-+||..+++||+|=+..++-.-.-...-.+||++|+--+.
T Consensus 7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~k 46 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLK 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 4799999999999888777766655666788888876543
No 16
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.13 E-value=0.3 Score=31.50 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4789999999999999999999987664
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.91 E-value=0.43 Score=31.10 Aligned_cols=28 Identities=18% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4789999999999999999999997764
No 18
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=88.51 E-value=0.64 Score=29.93 Aligned_cols=28 Identities=14% Similarity=-0.029 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.++.||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4789999999999999999999987664
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=88.10 E-value=0.47 Score=30.91 Aligned_cols=28 Identities=29% Similarity=0.155 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+..||.+|+.|..+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999999987764
No 20
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=87.41 E-value=4 Score=31.08 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=34.0
Q ss_pred CCCCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 149 GKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQ--AYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 149 ~~r~r~~~~~~d~~~~rr~rR~ikNReSA~rSR~RKk--ay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+|..|...+..-+.+.-..-+-++.++-.+..-.||+ ..+..-..++..|+++..++++.+.+|+.
T Consensus 12 ggsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 12 AGAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444454555555555556665 34444455667777777777777776654
No 21
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=87.05 E-value=1.2 Score=28.49 Aligned_cols=27 Identities=7% Similarity=0.013 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678999999999999999999987664
No 22
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=86.11 E-value=0.069 Score=41.34 Aligned_cols=30 Identities=30% Similarity=0.224 Sum_probs=25.5
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQA 186 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKka 186 (245)
........+..||.-|||..|++||+||-.
T Consensus 58 s~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 58 TESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455667889999999999999999999854
No 23
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=85.96 E-value=1 Score=29.05 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999999987664
No 24
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=85.86 E-value=1 Score=29.02 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5688999999999999999999987664
No 25
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.19 E-value=3.4 Score=32.49 Aligned_cols=29 Identities=41% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
-+.+.+|+.+|.+|..||..|+.+.+--.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999987433
No 26
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=84.81 E-value=1.9 Score=31.93 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 184 KQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 184 Kkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
-.+||..|+.+...|..|+..|+.++..|.++
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999988763
No 27
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=84.55 E-value=1.5 Score=32.34 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
-.|+..|+.++..|++||..|+.++.+..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47999999999999999999999887544
No 28
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.53 E-value=1.7 Score=31.86 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
-.|+..|+.++..|+.+...|+.++..|+++
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999998888763
No 29
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=84.29 E-value=2 Score=27.49 Aligned_cols=27 Identities=22% Similarity=0.046 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678999999999999999999987664
No 30
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=83.70 E-value=1.5 Score=28.27 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999999987764
No 31
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=82.70 E-value=1.3 Score=33.14 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKE 208 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~ 208 (245)
|+.|.+|+.++.+|+.||.-|+.-
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777766653
No 32
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=79.26 E-value=3.5 Score=28.87 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+.|-.+|+.|+.||..|++++++...
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 467889999999999999999987543
No 33
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=79.22 E-value=4.3 Score=30.36 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-+|+..|+.+...|..+...|+.++..|.+
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999888888877777777777765
No 34
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=75.77 E-value=2.9 Score=29.05 Aligned_cols=29 Identities=7% Similarity=0.034 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+|++.+...+..|..||..|+.++..++.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888999999999999999999987764
No 35
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=75.76 E-value=3.7 Score=25.42 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.|-.-+..|+.||.+|+..+++|..
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677899999999999887654
No 36
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=73.87 E-value=6.6 Score=25.23 Aligned_cols=28 Identities=11% Similarity=-0.054 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3678999999999999999999886653
No 37
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=72.64 E-value=7.1 Score=24.45 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+..||.+|.+.+.||-+|..++..|.-
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 457899999999999999998887653
No 38
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=72.56 E-value=2 Score=34.19 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
-+++|+.++.+|+-||..|++++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999875
No 39
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=70.78 E-value=16 Score=32.32 Aligned_cols=34 Identities=26% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTKERYKQL 220 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l 220 (245)
.+..||.++..++.+|.....++..++++.+++-
T Consensus 132 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa 165 (234)
T 3plt_A 132 KIPVLEQELVRAEAESLVAEAQLSNITREKLKAA 165 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHH
Confidence 3568888888888888888888888887776653
No 40
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.38 E-value=5.3 Score=26.98 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
.+..||.+|..|+.||+.|++.+
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 35689999999999999998764
No 41
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=69.78 E-value=3.1 Score=30.27 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKE 208 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~ 208 (245)
-.|+..|+.++..|+.++..|+++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777777777777777777654
No 42
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.67 E-value=11 Score=25.27 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
....+||.+|+-|+.||.-|+.-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 446788888888888888887643
No 43
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=68.62 E-value=3.6 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
..|+..|+.++..|+.....|...+.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999988888876543
No 44
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=67.14 E-value=8 Score=33.10 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.+|..++.+|+++|++|+++.++..+
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777776665543
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.91 E-value=14 Score=25.44 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025985 194 LAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 194 ~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.|..|+.||..|+.++..|.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443
No 46
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.65 E-value=32 Score=36.12 Aligned_cols=28 Identities=39% Similarity=0.475 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
...++|+.+|..|++||..|+.++.+|+
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999999888887
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.81 E-value=15 Score=28.58 Aligned_cols=29 Identities=24% Similarity=0.128 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
-+..|..++..|+.||.+|++++..|+-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999988764
No 48
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=59.13 E-value=22 Score=30.32 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEK 223 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~ 223 (245)
++++.-|=.++..|+.+|.+|.++++.|++ ++++.+++
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~-E~n~~l~q 181 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLR-DWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 468888889999999999999999999986 56666554
No 49
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.83 E-value=19 Score=24.78 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~ 209 (245)
.+|..++..|.+++.+|+.++
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.53 E-value=46 Score=30.55 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 179 RSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 179 rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.-|.+.+.+++....+..+|++||++|+..+.++..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 356677788888888899999999999998887754
No 51
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=53.23 E-value=7.5 Score=26.81 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLL 206 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~ 206 (245)
..|+.+||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3788899999888887665543
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.10 E-value=19 Score=26.54 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
..|.+.+.+||.++..++.+...|+.++..
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777999999999999999988888764
No 53
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.79 E-value=14 Score=26.71 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
.|+.++..|+.+|..|+.++..
T Consensus 58 ~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 58 THQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666554
No 54
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.21 E-value=0.49 Score=36.51 Aligned_cols=29 Identities=31% Similarity=0.272 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025985 157 EPLDKAAQQRQRRMIKNRESAARSRERKQ 185 (245)
Q Consensus 157 ~~~d~~~~rr~rR~ikNReSA~rSR~RKk 185 (245)
......-.+..||.-|||..|++||+||-
T Consensus 58 t~~Ql~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 58 NEAQLALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp CHHHHHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHcchhhc
Confidence 34456677888999999999999999874
No 55
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.04 E-value=46 Score=22.12 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
|-|+++||.+-..|+.-.+.|+-...+|.
T Consensus 9 knyiqeleernaelknlkehlkfakaele 37 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 56888888776666655555655555443
No 56
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=45.92 E-value=5.3 Score=30.11 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=9.5
Q ss_pred CChHHhhhhh
Q 025985 1 MTVDGILRNV 10 (245)
Q Consensus 1 Mn~De~L~ni 10 (245)
||||++||+|
T Consensus 1 ~~~e~~Lr~I 10 (79)
T 2p22_D 1 MNVEELLRRI 10 (79)
T ss_dssp CHHHHHHHHS
T ss_pred CCHHHHHhcC
Confidence 8999999987
No 57
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.83 E-value=43 Score=24.25 Aligned_cols=30 Identities=27% Similarity=0.178 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
.|.+.+.+||..+..-..|+.+|+.++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999887643
No 58
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=45.24 E-value=21 Score=30.70 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEK 209 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~ 209 (245)
.+.+|+.+..+|.+||++|.++.
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677777777777777777654
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.04 E-value=1.2e+02 Score=28.28 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAER 212 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l 212 (245)
++.++.|+.++..++...+.-+.++.++
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 3344444455555554444433344333
No 60
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.92 E-value=35 Score=25.28 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.|+.++..|+.+|..|+.++..|+
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555667778888887777653
No 61
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.05 E-value=62 Score=22.52 Aligned_cols=27 Identities=30% Similarity=0.174 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.+.+|+.+...|+.+...|..++..|+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777554
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=41.79 E-value=40 Score=24.42 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
..+.+|+.....|..||..|+.++..|..+
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888889999999999999988763
No 63
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.38 E-value=73 Score=22.41 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhc
Q 025985 190 ELESLAVRLEEENEQLLKEKAERT--KERYKQLMEKVV 225 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~--~~~~~~l~~~~~ 225 (245)
.|-.+|..|+.||.+|++-+++=. ++++..++.+++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~ 51 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999998776543 344555555553
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.90 E-value=1.8e+02 Score=27.03 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+++..+...|++|..+|++++++.++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~ 558 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRA 558 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhh
Confidence 33334444444555555555544443
No 65
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.65 E-value=22 Score=21.49 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025985 195 AVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 195 v~~Le~EN~~L~~~~~~l~ 213 (245)
+.+|+..|.+|+.++..|+
T Consensus 2 irrlkqknarlkqeiaale 20 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALE 20 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHH
Confidence 3456666777776666554
No 66
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=38.50 E-value=44 Score=23.05 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
.++..+..|+.+..+++.+++...+ +|++||.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~-eYq~Lln 35 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKK-LVGDLLN 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3445555555555555555554432 5555554
No 67
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=38.41 E-value=20 Score=28.11 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHH-----H------------HHHHHHHHHHHHHHHHHHH
Q 025985 161 KAAQQRQRRMIKNRESAARSR-----E------------RKQAYQVELESLAVRLEEE 201 (245)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR-----~------------RKkay~~eLE~~v~~Le~E 201 (245)
...||+.|-.|..+-.+=++= . +--.|+..|+.++..|+++
T Consensus 32 n~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 32 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777776654331 1 1236888888777766654
No 68
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.35 E-value=1.2e+02 Score=24.27 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
++.+.+|+-++..|..+......+++.|++
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344778887777777666666666666664
No 69
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=37.91 E-value=17 Score=27.19 Aligned_cols=27 Identities=26% Similarity=0.163 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
++.|..++..|++.|.+|..++.-|+.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999987765
No 70
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=37.45 E-value=5.2 Score=29.08 Aligned_cols=12 Identities=50% Similarity=0.938 Sum_probs=0.0
Q ss_pred CCcccccCCCCC
Q 025985 234 PRVLRRVQSAEW 245 (245)
Q Consensus 234 ~~~LRRt~S~~w 245 (245)
.+-.+||+||.|
T Consensus 54 ~r~~kRtSSA~W 65 (71)
T 4af3_D 54 PRYHKRTSSAVW 65 (71)
T ss_dssp ------------
T ss_pred cccccCCCcccC
Confidence 455789999999
No 71
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.04 E-value=43 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
.|..+|..|++|+..|+.++.+|+
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666554
No 72
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=36.13 E-value=79 Score=26.34 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLE 199 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le 199 (245)
++|++|+.+|..+...++
T Consensus 22 ~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 22 KQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999998776543
No 73
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.79 E-value=75 Score=21.67 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
-+..|+.+...|..+...|+.++..|+.
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777776654
No 74
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=35.31 E-value=73 Score=23.94 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
+.+.+.|.+...|+..|..|..++.+|+.+
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 445577888888999999999999888753
No 75
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.27 E-value=1.3e+02 Score=22.02 Aligned_cols=32 Identities=19% Similarity=-0.031 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+|-+.+...+..+..|+.+..+...++.+|+.
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777766654
No 76
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.07 E-value=58 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025985 193 SLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 193 ~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
.+|..||++|..|..++..+..+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 47888888888888888777653
No 77
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=34.22 E-value=97 Score=21.88 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.-..|-.+|.+|+..|.+...+++.|.+
T Consensus 18 q~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 18 QMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888888888888888776664
No 78
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.84 E-value=44 Score=24.40 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.|+.+...|+.+|..|+.+++
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666666654
No 79
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.44 E-value=1.2e+02 Score=20.73 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 164 QQRQRRMIKNRESAARSRERK---QAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 164 ~rr~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+|.+=.+.-+-|-.+-..+= ..-+.+|+.+...|..+...|..++..|++
T Consensus 4 rrr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 4 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333 234667777778888888888888777664
No 80
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=32.09 E-value=70 Score=25.28 Aligned_cols=35 Identities=17% Similarity=0.014 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTKERYKQLMEK 223 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~ 223 (245)
.+|..+|..|.+|+..|+++++.++++-.......
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~ 62 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADI 62 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888876544443333
No 81
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.07 E-value=1.2e+02 Score=22.09 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 179 RSRERKQAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 179 rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
+-|...+..+..||.++.+++.+-.....+.++
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~ 37 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQE 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777776666655554444443
No 82
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.42 E-value=1.1e+02 Score=22.92 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025985 191 LESLAVRLEEENEQLLK 207 (245)
Q Consensus 191 LE~~v~~Le~EN~~L~~ 207 (245)
|+.++..|+++|..|..
T Consensus 25 LqmEieELKekN~~L~~ 41 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 83
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.06 E-value=1.7e+02 Score=21.97 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 170 MIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 170 ~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
=|+.+.+-++-=.+=++-...++.++...+..|..|..++..++.+
T Consensus 22 EIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 22 EVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444455556667778888888888888888877653
No 84
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.89 E-value=1.3e+02 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
.+...+..|+.+..+++.+++...+ +|++||
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~-EYq~Ll 39 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLD-EYQELL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3444444555555555554443322 444444
No 85
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=30.65 E-value=88 Score=26.82 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=7.3
Q ss_pred cccHHHHHhhh
Q 025985 79 MMTLEDFLAKA 89 (245)
Q Consensus 79 eMTLEDFLvkA 89 (245)
.|+.|+|+...
T Consensus 60 ~~~~eey~~~l 70 (213)
T 1ik9_A 60 AMEKGKYVGEL 70 (213)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 47777776554
No 86
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.35 E-value=1.1e+02 Score=26.61 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKVV 225 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~~ 225 (245)
..++.|+.++..|++||.+|+.-.+.++ -+..+|+++.
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae~~q--~la~vi~~l~ 159 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAEHVQ--YMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 4467777788888888888777666543 2344444443
No 87
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.69 E-value=89 Score=19.93 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.....+..|+.+|..|..++.
T Consensus 11 a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHH
Confidence 344555667777777766654
No 88
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.54 E-value=50 Score=29.49 Aligned_cols=30 Identities=13% Similarity=0.033 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+..+..|+.+...|.++...+++++..|+.
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554
No 89
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=29.52 E-value=18 Score=26.94 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=25.1
Q ss_pred ccCcccchHHHHHHHHhcccc------cchhhhc----cccccHHHHHhhhcc
Q 025985 49 SAGAMKSVDDVWREIVSGEKK------EMKEEAI----DEMMTLEDFLAKAGA 91 (245)
Q Consensus 49 ~~lskKTVDEVWrdIq~~~~~------~~~~~~~----~geMTLEDFLvkAGv 91 (245)
.....=|.+.|+.=|+=..+. ....-.. +=.||.|||+.+++.
T Consensus 8 ~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 8 SDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 344556788888766633211 1111111 236999999999874
No 90
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=29.51 E-value=2.5e+02 Score=23.52 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=32.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 166 RQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 166 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
-.-.+..-=+.=+++|.+-.+.+.+|+.++..|..|..+++.....+.
T Consensus 70 e~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555677777788888888888888888777777665554
No 91
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=28.89 E-value=43 Score=23.21 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHH
Q 025985 178 ARSRERKQAYQVELE 192 (245)
Q Consensus 178 ~rSR~RKkay~~eLE 192 (245)
-.||.-||+|+.+|-
T Consensus 15 ~LS~~~K~sYi~~L~ 29 (53)
T 1r4g_A 15 PLSRAEKAAYVKSLS 29 (53)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 457899999999997
No 92
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.87 E-value=2.3e+02 Score=26.32 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 161 KAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
+..+|.+.+..+-+..|..++..-+..+..+...-...+.+-..+-..+++|..++...|.+
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777778878777777777777655666666677777777777776655543
No 93
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.66 E-value=1.4e+02 Score=22.33 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 198 LEEENEQLLKEKAERTKERYKQLMEK 223 (245)
Q Consensus 198 Le~EN~~L~~~~~~l~~~~~~~l~~~ 223 (245)
|..||.+|+.+...-. .+...|+.+
T Consensus 53 L~~en~qLk~E~~~wq-~Rl~~LLgk 77 (81)
T 2jee_A 53 LERENNHLKEQQNGWQ-ERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 4444444544444322 233444443
No 94
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=28.34 E-value=3e+02 Score=24.04 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 161 KAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 161 ~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
+..+|.+.+..+-+..+..++..-...+..+...-...+++-..+-..++++..++...|.
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk 252 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFR 252 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777788888888877766667777665556666666666666777666655543
No 95
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.22 E-value=1.9e+02 Score=21.64 Aligned_cols=65 Identities=25% Similarity=0.270 Sum_probs=42.3
Q ss_pred CCCCCCCccccHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 150 KRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQ---AYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 150 ~r~r~~~~~~d~~~~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
+.++.++...+.--++|.+=-+.-|-|-...|.|-. ..+.+|+.+-..|+.+...|..++..|+.
T Consensus 4 k~kk~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 4 KAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp ------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455566676666666666555555543 45789999999999999999999997764
No 96
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=27.69 E-value=1.2e+02 Score=23.85 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTKERYKQLMEKV 224 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~~~ 224 (245)
-+.+|+.+|+.++..|.+|+.-.....+ ++.+..-.+
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~-eFReav~~L 41 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQ-EFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4778999999999999999988876654 555555544
No 97
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=27.64 E-value=73 Score=22.52 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025985 192 ESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 192 E~~v~~Le~EN~~L~~~~~~l~ 213 (245)
|.++..|++-|..|-.+++.|+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le 31 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLE 31 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554
No 98
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.61 E-value=1.6e+02 Score=22.19 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
..++.++.++..|++||.+|+.-.+
T Consensus 45 ~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 45 KEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777766665444
No 99
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.55 E-value=21 Score=27.27 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=27.8
Q ss_pred ccccCcccchHHHHHHHHhcccc------cchh-hhccc----cccHHHHHhhhccc
Q 025985 47 AVSAGAMKSVDDVWREIVSGEKK------EMKE-EAIDE----MMTLEDFLAKAGAV 92 (245)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~------~~~~-~~~~g----eMTLEDFLvkAGvv 92 (245)
.+....-=|.++|+.=|+=..+. .... +...| .||.|||+.+++.+
T Consensus 20 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~F~~m~G~~LC~ls~edF~~~~~~~ 76 (98)
T 1x66_A 20 VPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 76 (98)
T ss_dssp CCSSGGGCCTTHHHHHHHHHHHHTTCCSCCGGGGTTCCHHHHHHCCHHHHHTTSCHH
T ss_pred CCCChhhcCHHHHHHHHHHHHHhcCCCCCChhhCCCCCHHHHHcCCHHHHHHHcCCC
Confidence 45556677888888866632211 1111 11223 59999999998754
No 100
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.37 E-value=22 Score=27.02 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=11.4
Q ss_pred cccHHHHHhhhcc
Q 025985 79 MMTLEDFLAKAGA 91 (245)
Q Consensus 79 eMTLEDFLvkAGv 91 (245)
.||.|||+.+++.
T Consensus 62 ~lskedF~~~~p~ 74 (96)
T 2dkx_A 62 AMSEEQFRQRSPL 74 (96)
T ss_dssp HSCHHHHHHHCSS
T ss_pred hCCHHHHHHHcCc
Confidence 5999999999873
No 101
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.36 E-value=1.1e+02 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 185 QAYQVELESLAVRLEEENEQLLKEKAE 211 (245)
Q Consensus 185 kay~~eLE~~v~~Le~EN~~L~~~~~~ 211 (245)
...++.|+.++..|+++|..|+.-.+.
T Consensus 52 h~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 52 HKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888776554
No 102
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.22 E-value=1e+02 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
..|..++..|..||.++.++...+++
T Consensus 58 ~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 58 TQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666665554
No 103
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=26.22 E-value=22 Score=25.08 Aligned_cols=10 Identities=40% Similarity=0.910 Sum_probs=8.8
Q ss_pred cccchHHHHH
Q 025985 52 AMKSVDDVWR 61 (245)
Q Consensus 52 skKTVDEVWr 61 (245)
..||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 5799999996
No 104
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.74 E-value=2e+02 Score=21.03 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
.+..+...+..|+.+..+++.++....+ +|+.||.
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~-EYq~Lln 63 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLD-EYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3445555566666666666666655433 5666664
No 105
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=24.32 E-value=1.4e+02 Score=19.21 Aligned_cols=24 Identities=42% Similarity=0.335 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.+++|..+...|+.|-.+|+..+.
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 355666666666666666666554
No 106
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.19 E-value=1.7e+02 Score=19.87 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.+|..++..|...|.+|-.-+.+.+.
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~ 37 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQ 37 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665555443
No 107
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.06 E-value=97 Score=27.64 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
+.+|+.++..|...|..|...+.++++ +..+|.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~-El~~Lke 89 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQ-QLLALRE 89 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 445666666666666666666666654 3444433
No 108
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.92 E-value=1.5e+02 Score=22.04 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
..++.+..++..|++||..|+.-....+
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777777766555443
No 109
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.86 E-value=1.1e+02 Score=20.99 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.||.-|.+|+..|..|.+.+..|++
T Consensus 21 klenivarlendnanlekdianlek 45 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHH
Confidence 5777888888888888888887765
No 110
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.78 E-value=99 Score=28.65 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLK 207 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~ 207 (245)
+|+.+++.++.++.+|..
T Consensus 21 ~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 111
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=23.74 E-value=56 Score=28.55 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 174 RESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTKE 215 (245)
Q Consensus 174 ReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~ 215 (245)
||+.---=.......+++..++.+|.+||..++.+++.|+.+
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444455667778888888888888888877653
No 112
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.57 E-value=2.2e+02 Score=20.95 Aligned_cols=36 Identities=8% Similarity=-0.067 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKEKAERTKERY 217 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~ 217 (245)
.-=+..++.|..+|..|+-.++++..+++.+.++..
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777777777777765433
No 113
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.45 E-value=79 Score=27.45 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 025985 193 SLAVRLEEENEQLLKE 208 (245)
Q Consensus 193 ~~v~~Le~EN~~L~~~ 208 (245)
.++..|+.||.+|+..
T Consensus 43 ~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 43 SEVADLKKENKDLKES 58 (255)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555443
No 114
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.43 E-value=32 Score=23.91 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025985 184 KQAYQVELESLAVRLEEENEQL 205 (245)
Q Consensus 184 Kkay~~eLE~~v~~Le~EN~~L 205 (245)
+..|+..|+.+|..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999998887655544
No 115
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.32 E-value=1.4e+02 Score=24.85 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 025985 200 EENEQLLKEKA 210 (245)
Q Consensus 200 ~EN~~L~~~~~ 210 (245)
-++..+..++.
T Consensus 110 lq~n~lE~kl~ 120 (152)
T 3a7p_A 110 IENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 116
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.15 E-value=1.4e+02 Score=26.68 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+.++.|+.+...|++|.++|.++.+.+.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555555555555544444433
No 117
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.11 E-value=1.5e+02 Score=27.01 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 178 ARSRERKQAY----QVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 178 ~rSR~RKkay----~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+.|=.+|+.. ++|||.++..|..+.+.++.++++++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 431 MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 118
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=23.10 E-value=62 Score=20.87 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025985 193 SLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 193 ~~v~~Le~EN~~L~~~~~ 210 (245)
.+|..|+.+|..|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578899999999988764
No 119
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.80 E-value=1.4e+02 Score=18.47 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
..|.+++..|+.|...|+-++..|++
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666666666666666666554
No 120
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.45 E-value=53 Score=24.39 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=22.8
Q ss_pred CcccchHHHHHHHHhcccccchhhhccccccHHHHHhhhccc
Q 025985 51 GAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAV 92 (245)
Q Consensus 51 lskKTVDEVWrdIq~~~~~~~~~~~~~geMTLEDFLvkAGvv 92 (245)
++...++++|+++-.. ..|.+++++|+.--..+
T Consensus 53 l~~~el~~i~~~~D~d---------~dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 53 LSIPELSYIWELSDAD---------CDGALTLPEFCAAFHLI 85 (110)
T ss_dssp CSSCCHHHHHHHHCSS---------SCSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCC---------CCCcCcHHHHHHHHHHH
Confidence 5677889999876211 24789999998754433
No 121
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=22.35 E-value=25 Score=26.75 Aligned_cols=46 Identities=20% Similarity=0.060 Sum_probs=28.3
Q ss_pred ccccCcccchHHHHHHHHhcccc------cchhh-hc----cccccHHHHHhhhccc
Q 025985 47 AVSAGAMKSVDDVWREIVSGEKK------EMKEE-AI----DEMMTLEDFLAKAGAV 92 (245)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~------~~~~~-~~----~geMTLEDFLvkAGvv 92 (245)
.+.....=|.+.|+.=|+-..+. ....- .. +=.||.|||+.+++.+
T Consensus 23 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~~m~G~~LC~lt~edF~~~~p~~ 79 (97)
T 1sxe_A 23 VPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLTPSY 79 (97)
T ss_dssp SCSSTTSCCHHHHHHHHHHHHHHHTCSSCCGGGSTTCCHHHHTTCCHHHHTTTSCHH
T ss_pred CCcchhccCHHHHHHHHHHHHHhcCCCCCCHHhcCCCCHHHHHhCCHHHHHHHcCCC
Confidence 45566777899998876643211 11111 11 2369999999998753
No 122
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.21 E-value=2.7e+02 Score=21.43 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
+..+...+..|+.+..+++.++....+ +|++||.
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~-EYq~Lln 110 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLR-EYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHH
Confidence 344455677777777777777765543 6777776
No 123
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1 PDB: 1q88_A 1q89_A
Probab=22.18 E-value=47 Score=29.16 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=22.9
Q ss_pred cccchHHHHHHHHhcccccchhhhccccccHHHHHhhhc
Q 025985 52 AMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAG 90 (245)
Q Consensus 52 skKTVDEVWrdIq~~~~~~~~~~~~~geMTLEDFLvkAG 90 (245)
=++-|++.|-+|.+. +.+.|+||+|.-+|-
T Consensus 35 Fk~~vi~iW~eiv~~---------~~i~~~~~~fI~~aa 64 (221)
T 1q87_A 35 FRAKVDEIWFRLTQK---------TDGTVMRDFLIEKAA 64 (221)
T ss_dssp HHHHHHHHHHHHHSS---------SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---------ccccccHHHHHHHHH
Confidence 467799999999865 235689999977764
No 124
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.98 E-value=2.3e+02 Score=20.91 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
.-+.+|..++..|+.|...|+-+++++.- +.+++..
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~-~l~ql~~ 55 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQY-QLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 44667999999999999999999998764 4555544
No 125
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.82 E-value=89 Score=21.80 Aligned_cols=21 Identities=33% Similarity=0.208 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025985 186 AYQVELESLAVRLEEENEQLL 206 (245)
Q Consensus 186 ay~~eLE~~v~~Le~EN~~L~ 206 (245)
.|+..|+.++..||.....|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 478888888888877666553
No 126
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=21.67 E-value=31 Score=25.99 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=23.9
Q ss_pred ccCcccchHHHHHHHHhcccc------cchhhhccc----cccHHHHHhhhc
Q 025985 49 SAGAMKSVDDVWREIVSGEKK------EMKEEAIDE----MMTLEDFLAKAG 90 (245)
Q Consensus 49 ~~lskKTVDEVWrdIq~~~~~------~~~~~~~~g----eMTLEDFLvkAG 90 (245)
.....=|.+.|+.=|+=..+. ....-+..| .||.|||+.+++
T Consensus 21 ~DP~~Ws~~~V~~WL~W~~~ef~L~~v~~~~f~m~G~~LC~ls~edF~~~~p 72 (91)
T 1sxd_A 21 YDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVP 72 (91)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHTTCCCSCSGGGCSCHHHHHHSCHHHHHHHCT
T ss_pred CChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHCC
Confidence 344556778887766532211 111111123 599999999975
No 127
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.50 E-value=87 Score=23.92 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
..|+.+...|+++...|+.++..|+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555443
No 128
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.27 E-value=1.8e+02 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 189 VELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 189 ~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
..|..++..|++|+..|+.++.+|+
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788889999999999998776
No 129
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=21.18 E-value=29 Score=27.02 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=27.2
Q ss_pred ccccCcccchHHHHHHHHhcccc------cchhhhccc----cccHHHHHhhhccc
Q 025985 47 AVSAGAMKSVDDVWREIVSGEKK------EMKEEAIDE----MMTLEDFLAKAGAV 92 (245)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~------~~~~~~~~g----eMTLEDFLvkAGvv 92 (245)
.+.....=|.+.|+.=|+=..+. ....-...| .||.|||+.+++..
T Consensus 37 ip~DP~~WS~~~V~~WL~W~~~ef~L~~v~~~~F~m~G~~LC~ls~edF~~~~p~~ 92 (110)
T 2jv3_A 37 IPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDF 92 (110)
T ss_dssp CCSSSTTCCHHHHHHHHHHHHHHHTCCCCCTTTTCCCHHHHHHTHHHHHHHHSCHH
T ss_pred CCCChHhCCHHHHHHHHHHHHHhcCCCCCChhcCCCCHHHHHhCCHHHHHHHcCCC
Confidence 34455667888888877532211 111111123 59999999998853
No 130
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.06 E-value=2.9e+02 Score=21.35 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 187 YQVELESLAVRLEEENEQLLKEKAERTKERYKQLME 222 (245)
Q Consensus 187 y~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~~ 222 (245)
.+..+...+..|+.+...++.++....+ +|++||.
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~-EYq~Ll~ 112 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQ-EYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3445556677777777777777766543 6777775
No 131
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=21.02 E-value=2e+02 Score=19.54 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKE 208 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~ 208 (245)
+||.+.+++|.. |+.+...|+.+
T Consensus 6 rrr~e~ld~l~~----LEkqF~~LkEq 28 (49)
T 2xus_A 6 RRRSECVSEMLD----LEKQFSELKEK 28 (49)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 566777766653 55555555443
No 132
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.87 E-value=2.1e+02 Score=26.43 Aligned_cols=15 Identities=13% Similarity=-0.126 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 025985 184 KQAYQVELESLAVRL 198 (245)
Q Consensus 184 Kkay~~eLE~~v~~L 198 (245)
.++++.+++.++..|
T Consensus 22 l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 22 LKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 133
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.86 E-value=1.7e+02 Score=19.31 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 188 QVELESLAVRLEEENEQLLKEKAERT 213 (245)
Q Consensus 188 ~~eLE~~v~~Le~EN~~L~~~~~~l~ 213 (245)
+.+|..-+..|++.|.+|+.-.+.|+
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45788888889999999888777665
No 134
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.74 E-value=33 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=28.4
Q ss_pred ccccCcccchHHHHHHHHhcccc------cchhh-hccc----cccHHHHHhhhccc
Q 025985 47 AVSAGAMKSVDDVWREIVSGEKK------EMKEE-AIDE----MMTLEDFLAKAGAV 92 (245)
Q Consensus 47 ~~~~lskKTVDEVWrdIq~~~~~------~~~~~-~~~g----eMTLEDFLvkAGvv 92 (245)
.+....-=|.+.||.=|+=..+. ....- ...| .||.|||+.+++.+
T Consensus 34 IP~DP~~WS~~~V~~WL~Wa~~ef~L~~id~~~Fq~mnGk~LC~LskeDF~~~~p~~ 90 (128)
T 2ytu_A 34 VPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLY 90 (128)
T ss_dssp CCSCGGGCCTTHHHHHHHHHHHHTCCCSCCCGGGSSCCTTHHHHCCHHHHHHHSCHH
T ss_pred CCcchhhCCHHHHHHHHHHHHHhcCCCCCChHhCCCCCHHHHHcCCHHHHHHHcCCC
Confidence 45566777888998877643211 11111 1223 59999999998764
No 135
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.69 E-value=34 Score=25.99 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=26.8
Q ss_pred cccCcccchHHHHHHHHhccc---cc-----chhhhccc----cccHHHHHhhhccc
Q 025985 48 VSAGAMKSVDDVWREIVSGEK---KE-----MKEEAIDE----MMTLEDFLAKAGAV 92 (245)
Q Consensus 48 ~~~lskKTVDEVWrdIq~~~~---~~-----~~~~~~~g----eMTLEDFLvkAGvv 92 (245)
.....-=|.+.||.=|+-.-+ -+ ...-...| .||.|||+.+|+..
T Consensus 21 ~~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~mskedF~~~~p~~ 77 (92)
T 2e8p_A 21 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPL 77 (92)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHHHHHHSGGG
T ss_pred CCChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHHHHHHcCCc
Confidence 344566788999887764311 11 10111123 59999999998763
No 136
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.38 E-value=2.7e+02 Score=20.68 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 182 ERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 182 ~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
.--..|+.+|-.++..+..+|.+|.-++..|..
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335688899999999999999999988887654
No 137
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=20.22 E-value=2.6e+02 Score=24.40 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 183 RKQAYQVELESLAVRLEEENEQLLKEKAERTKERYKQLM 221 (245)
Q Consensus 183 RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~~~~~~l~ 221 (245)
=||+.++..+..|..|++|+..-+.++.+.-+++.+.+|
T Consensus 66 dkk~m~~rFQ~~v~aLE~E~~~ErqqL~etH~~RV~a~L 104 (219)
T 3pmr_A 66 DRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALI 104 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999988877776654
No 138
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.05 E-value=4.9e+02 Score=23.55 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025985 171 IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKAERTK 214 (245)
Q Consensus 171 ikNReSA~rSR~RKkay~~eLE~~v~~Le~EN~~L~~~~~~l~~ 214 (245)
++-|+-+.+--+..+..++.|+.+-.+|+.++.++..++.+.++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 33344455666666777777777777777777777777776665
No 139
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.02 E-value=1.6e+02 Score=22.77 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 025985 162 AAQQRQRRMI 171 (245)
Q Consensus 162 ~~~rr~rR~i 171 (245)
......|+.+
T Consensus 20 ~~I~~LR~qi 29 (119)
T 3ol1_A 20 EEMRELRRQV 29 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444455544
No 140
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.02 E-value=1.1e+02 Score=18.21 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025985 190 ELESLAVRLEEENEQLLKEKA 210 (245)
Q Consensus 190 eLE~~v~~Le~EN~~L~~~~~ 210 (245)
.|..+|-.|+-|-..|+.+..
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 444444445544444444443
Done!