Query 025986
Match_columns 245
No_of_seqs 32 out of 34
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 22:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2p_A Selenoprotein M, SELM p 42.7 32 0.0011 28.0 4.7 40 147-186 75-117 (129)
2 1dbw_A Transcriptional regulat 25.1 40 0.0014 23.1 2.2 29 36-69 90-118 (126)
3 3to5_A CHEY homolog; alpha(5)b 24.8 35 0.0012 26.1 2.0 18 36-53 102-119 (134)
4 3gl9_A Response regulator; bet 22.4 43 0.0015 23.2 1.9 19 35-53 90-108 (122)
5 3m6m_D Sensory/regulatory prot 21.6 44 0.0015 23.9 1.9 20 35-54 104-123 (143)
6 3h1g_A Chemotaxis protein CHEY 20.8 47 0.0016 23.0 1.9 19 35-53 95-113 (129)
7 2qvg_A Two component response 20.2 17 0.0006 25.4 -0.5 20 35-54 103-122 (143)
8 3f6p_A Transcriptional regulat 19.1 49 0.0017 22.7 1.6 18 36-53 88-105 (120)
9 3eqz_A Response regulator; str 18.8 71 0.0024 21.7 2.4 18 36-53 94-111 (135)
10 1dcf_A ETR1 protein; beta-alph 18.5 60 0.0021 22.5 2.0 18 36-53 98-115 (136)
No 1
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=42.70 E-value=32 Score=27.99 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=30.1
Q ss_pred CCCChHHHHHHHhhh--ccCCCCCCCCCCC-CCCCCCCCCCCC
Q 025986 147 EGLRDEEVEVFLHSR--VKRGRGAVGSRMD-EAGPYLAPSADS 186 (245)
Q Consensus 147 ~GL~DdEieeFL~SR--vKRGRGAVGSRMD-EpGPYLp~~~~~ 186 (245)
+++.-|+|++||.++ ++++-.+.+-.-+ .-+||.|....+
T Consensus 75 ekw~~d~I~efL~e~GF~rk~~~~~~~p~e~~~~p~~~~~~~~ 117 (129)
T 2a2p_A 75 SQMTRDEINALVQELGFYRKSAPEAQVPPEYLWAPAKPPEEAS 117 (129)
T ss_dssp SSSCHHHHHHHHHHHTCCBCSSTTCCCCGGGSSTTSCCCSTTT
T ss_pred ccCCHHHHHHHHHHcCCccccccccCCCHHHHhCCCCCccCCc
Confidence 567899999999887 6777776666555 578998876443
No 2
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=25.10 E-value=40 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=18.8
Q ss_pred HHHHhhcceeeeccCCccCCCCCccchhhhhhhh
Q 025986 36 RQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGV 69 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~r~rpN~RFL~atvRGV 69 (245)
..++-+.|+..||.||... .-|..+|+.+
T Consensus 90 ~~~~~~~ga~~~l~Kp~~~-----~~l~~~i~~~ 118 (126)
T 1dbw_A 90 AVEAMKAGAVDFIEKPFED-----TVIIEAIERA 118 (126)
T ss_dssp HHHHHHTTCSEEEESSCCH-----HHHHHHHHHH
T ss_pred HHHHHHhCHHHheeCCCCH-----HHHHHHHHHH
Confidence 3456678999999998542 3344455444
No 3
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=24.84 E-value=35 Score=26.10 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=14.4
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-+-|+.+||.||-.
T Consensus 102 ~~~~~~~Ga~~yl~KP~~ 119 (134)
T 3to5_A 102 IIEAAQAGVNGYIVKPFT 119 (134)
T ss_dssp HHHHHHTTCCEEEESSCC
T ss_pred HHHHHHCCCCEEEECCCC
Confidence 345667899999999964
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.39 E-value=43 Score=23.17 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=15.0
Q ss_pred HHHHHhhcceeeeccCCcc
Q 025986 35 LRQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~ 53 (245)
...++-..|+.+||.||..
T Consensus 90 ~~~~~~~~Ga~~~l~KP~~ 108 (122)
T 3gl9_A 90 DESLALSLGARKVMRKPFS 108 (122)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHhcChhhhccCCCC
Confidence 3455678999999999964
No 5
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=21.62 E-value=44 Score=23.86 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=15.5
Q ss_pred HHHHHhhcceeeeccCCccC
Q 025986 35 LRQKAEKEGVHVYLQQPKMR 54 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~r 54 (245)
...++...|+.+||.||...
T Consensus 104 ~~~~~~~~Ga~~~l~KP~~~ 123 (143)
T 3m6m_D 104 AIRACEQAGARAFLAKPVVA 123 (143)
T ss_dssp HHHHHHHTTCSEEEESSCCH
T ss_pred HHHHHHHcChhheeeCCCCH
Confidence 34566788999999999753
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=20.80 E-value=47 Score=23.01 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=14.9
Q ss_pred HHHHHhhcceeeeccCCcc
Q 025986 35 LRQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~ 53 (245)
...++-+.|+..||.||..
T Consensus 95 ~~~~~~~~g~~~~l~KP~~ 113 (129)
T 3h1g_A 95 EVITALKAGVNNYIVKPFT 113 (129)
T ss_dssp HHHHHHHHTCCEEEESCCC
T ss_pred HHHHHHHcCccEEEeCCCC
Confidence 3455668899999999964
No 7
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.23 E-value=17 Score=25.38 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=15.5
Q ss_pred HHHHHhhcceeeeccCCccC
Q 025986 35 LRQKAEKEGVHVYLQQPKMR 54 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~r 54 (245)
....+-+.|+..||.||...
T Consensus 103 ~~~~~~~~g~~~~l~kP~~~ 122 (143)
T 2qvg_A 103 DKLAFESLNIRGHLIKPLDY 122 (143)
T ss_dssp HHHHHTTTTCCEEEESSCCH
T ss_pred HHHHHHhcCCCeEEECCCCH
Confidence 44566788999999999753
No 8
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=19.05 E-value=49 Score=22.73 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=14.2
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-..|+.+||.||..
T Consensus 88 ~~~~~~~ga~~~l~KP~~ 105 (120)
T 3f6p_A 88 KVIGLEIGADDYVTKPFS 105 (120)
T ss_dssp HHHHHHTTCCEEEEESCC
T ss_pred HHHHHhCCcceeEcCCCC
Confidence 345667899999999964
No 9
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=18.84 E-value=71 Score=21.74 Aligned_cols=18 Identities=11% Similarity=-0.108 Sum_probs=14.3
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-.-|+..||.||..
T Consensus 94 ~~~~~~~g~~~~l~KP~~ 111 (135)
T 3eqz_A 94 LALSCGLNVINTFTKPIN 111 (135)
T ss_dssp HHHHTTCEEEEEEESSCC
T ss_pred HHHHcCCCcceeeCCCCC
Confidence 345667899999999975
No 10
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=18.46 E-value=60 Score=22.50 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.0
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-+.|+..||.||..
T Consensus 98 ~~~~~~~ga~~~l~KP~~ 115 (136)
T 1dcf_A 98 KEKCMSFGLDGVLLKPVS 115 (136)
T ss_dssp HHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCeEEECCCC
Confidence 345567899999999964
Done!