Query 025986
Match_columns 245
No_of_seqs 32 out of 34
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 22:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025986.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025986hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qkka_ c.23.1.1 (A:) Transcri 50.0 16 0.0012 25.9 5.7 18 36-53 87-104 (140)
2 d1ny5a1 c.23.1.1 (A:1-137) Tra 48.1 9.7 0.00071 27.0 4.1 18 36-53 87-104 (137)
3 d1k68a_ c.23.1.1 (A:) Response 33.9 12 0.00089 26.7 2.7 31 35-70 99-129 (140)
4 d2a4ha1 c.47.1.23 (A:62-178) S 33.1 16 0.0011 27.6 3.3 28 147-174 72-99 (117)
5 d1p6qa_ c.23.1.1 (A:) CheY pro 31.0 9.7 0.00071 26.7 1.7 19 35-53 95-113 (129)
6 d1peya_ c.23.1.1 (A:) Sporulat 29.7 11 0.00082 26.1 1.8 18 36-53 88-105 (119)
7 d1krwa_ c.23.1.1 (A:) NTRC rec 29.1 13 0.00098 25.8 2.2 18 36-53 90-107 (123)
8 d1i3ca_ c.23.1.1 (A:) Response 27.7 13 0.00093 26.7 1.9 30 35-69 100-129 (144)
9 d1dz3a_ c.23.1.1 (A:) Sporulat 27.6 15 0.0011 25.5 2.2 20 35-54 90-109 (123)
10 d1jbea_ c.23.1.1 (A:) CheY pro 26.9 14 0.001 25.7 1.9 18 36-53 94-111 (128)
11 d2a9pa1 c.23.1.1 (A:2-118) DNA 26.5 14 0.001 25.4 1.8 18 36-53 86-103 (117)
12 d1p2fa2 c.23.1.1 (A:1-120) Res 26.3 14 0.001 25.6 1.8 20 35-54 85-104 (120)
13 d2r25b1 c.23.1.1 (B:1087-1214) 26.1 15 0.0011 26.0 1.9 21 34-54 93-113 (128)
14 d1kgsa2 c.23.1.1 (A:2-123) Pho 25.9 12 0.00087 25.9 1.4 29 34-67 86-114 (122)
15 d1u0sy_ c.23.1.1 (Y:) CheY pro 25.9 16 0.0011 25.3 2.0 19 35-53 88-106 (118)
16 d1zesa1 c.23.1.1 (A:3-123) Pho 25.6 15 0.0011 25.4 1.8 18 36-53 89-106 (121)
17 d2ayxa1 c.23.1.1 (A:817-949) S 25.1 16 0.0012 25.7 2.0 18 36-53 95-112 (133)
18 d1mb3a_ c.23.1.1 (A:) Cell div 25.0 13 0.00095 25.6 1.4 18 36-53 90-107 (123)
19 d1dbwa_ c.23.1.1 (A:) Transcri 24.9 16 0.0012 25.4 1.9 20 35-54 89-108 (123)
20 d1zgza1 c.23.1.1 (A:2-121) Tor 24.4 16 0.0012 25.0 1.8 18 36-53 87-104 (120)
21 d1mvoa_ c.23.1.1 (A:) PhoP rec 24.2 14 0.001 25.4 1.5 17 37-53 90-106 (121)
22 d2pl1a1 c.23.1.1 (A:1-119) Pho 23.4 18 0.0013 25.0 1.9 18 36-53 87-104 (119)
23 d1w25a1 c.23.1.1 (A:2-140) Res 23.2 66 0.0048 22.4 5.1 18 36-53 90-107 (139)
24 d1a2oa1 c.23.1.1 (A:1-140) Met 23.0 54 0.004 22.8 4.6 20 34-53 91-110 (140)
25 d1k66a_ c.23.1.1 (A:) Response 22.2 19 0.0014 25.9 1.9 18 36-53 107-124 (149)
26 d1xhfa1 c.23.1.1 (A:2-122) Aer 22.1 19 0.0014 24.9 1.8 28 36-68 88-115 (121)
27 d1zh2a1 c.23.1.1 (A:2-120) Tra 21.6 20 0.0014 24.7 1.8 17 37-53 87-103 (119)
28 d1dcfa_ c.23.1.2 (A:) Receiver 20.5 23 0.0017 24.9 2.0 19 35-53 97-115 (134)
No 1
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=49.98 E-value=16 Score=25.94 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..+|-+.|+..||.||..
T Consensus 87 ~~~a~~~Ga~dyl~KP~~ 104 (140)
T d1qkka_ 87 AVQAIQDGAYDFIAKPFA 104 (140)
T ss_dssp HHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEeecCCCC
Confidence 345567899999999954
No 2
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=48.05 E-value=9.7 Score=27.03 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=14.7
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-+.|+.+||.||..
T Consensus 87 ~~~a~~~Ga~dyl~KP~~ 104 (137)
T d1ny5a1 87 AVEAMKMGAYDFLTKPCM 104 (137)
T ss_dssp HHHHHTTTCCEEEEESCC
T ss_pred HHHHHHcCCCEEEeCCCC
Confidence 446678999999999964
No 3
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=33.94 E-value=12 Score=26.65 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=21.0
Q ss_pred HHHHHhhcceeeeccCCccCCCCCccchhhhhhhhh
Q 025986 35 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGVQ 70 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~r~rpN~RFL~atvRGVq 70 (245)
...++-+-|+.+||.||.. ..-|.++|+++.
T Consensus 99 ~~~~a~~~Ga~~yl~KP~~-----~~~L~~~i~~i~ 129 (140)
T d1k68a_ 99 DIFHSYDLHVNCYITKSAN-----LSQLFQIVKGIE 129 (140)
T ss_dssp HHHHHHHTTCSEEEECCSS-----HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCC-----HHHHHHHHHHHH
Confidence 3456667899999999964 334556666553
No 4
>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila melanogaster [TaxId: 7227]}
Probab=33.06 E-value=16 Score=27.61 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHhhhccCCCCCCCCCCC
Q 025986 147 EGLRDEEVEVFLHSRVKRGRGAVGSRMD 174 (245)
Q Consensus 147 ~GL~DdEieeFL~SRvKRGRGAVGSRMD 174 (245)
+++.-|+|++||++|+.+--+|-|+--+
T Consensus 72 ~kw~~D~i~efL~~~l~~~~~~~~~a~~ 99 (117)
T d2a4ha1 72 TKWNTDTVEEFFETHLAKDGAGKNSYSV 99 (117)
T ss_dssp SSSSCSHHHHHHHHHSCCCCSCCSCCCS
T ss_pred ccCCHHHHHHHHHHHHhhhccccccccc
Confidence 4577799999999999885555444433
No 5
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=31.03 E-value=9.7 Score=26.75 Aligned_cols=19 Identities=37% Similarity=0.364 Sum_probs=14.9
Q ss_pred HHHHHhhcceeeeccCCcc
Q 025986 35 LRQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~ 53 (245)
...++..-|+.+||.||..
T Consensus 95 ~~~~a~~~G~~~~l~KP~~ 113 (129)
T d1p6qa_ 95 LVQKAAALGANNVLAKPFT 113 (129)
T ss_dssp HHHHHHHHTCSCEECCCSS
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 3456667899999999964
No 6
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=29.72 E-value=11 Score=26.10 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.6
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-+.|+.+||.||-.
T Consensus 88 ~~~a~~~Ga~~yl~KP~~ 105 (119)
T d1peya_ 88 IQESKELGALTHFAKPFD 105 (119)
T ss_dssp HHHHHHTTCCEEEESSCC
T ss_pred HHHHHHCCCCEEEECCCC
Confidence 345778899999999964
No 7
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=29.14 E-value=13 Score=25.76 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.7
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
+.++-+.|+.+||.||..
T Consensus 90 ~~~a~~~Ga~dyl~KP~~ 107 (123)
T d1krwa_ 90 AVSAYQQGAFDYLPKPFD 107 (123)
T ss_dssp HHHHHHHTEEEECSSCCH
T ss_pred HHHHHHcCCCeEEeCcCC
Confidence 456678899999999964
No 8
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=27.73 E-value=13 Score=26.66 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=20.1
Q ss_pred HHHHHhhcceeeeccCCccCCCCCccchhhhhhhh
Q 025986 35 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGV 69 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~r~rpN~RFL~atvRGV 69 (245)
...++-+-||.+||.||... --|.++|+.+
T Consensus 100 ~~~~a~~~Ga~~yl~KP~~~-----~~L~~~i~~l 129 (144)
T d1i3ca_ 100 DVIASYELHVNCYLTKSRNL-----KDLFKMVQGI 129 (144)
T ss_dssp HHHHHHHTTCSEEEECCSSH-----HHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCH-----HHHHHHHHHH
Confidence 45667789999999999532 3344455444
No 9
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.60 E-value=15 Score=25.49 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=15.6
Q ss_pred HHHHHhhcceeeeccCCccC
Q 025986 35 LRQKAEKEGVHVYLQQPKMR 54 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~r 54 (245)
...++-+.|+.+||.||...
T Consensus 90 ~~~~a~~~Ga~~~l~KP~~~ 109 (123)
T d1dz3a_ 90 VTKKAVELGASYFILKPFDM 109 (123)
T ss_dssp HHHHHHHTTCEEEEECSSCC
T ss_pred HHHHHHHCCCCEEEECCCCH
Confidence 34567789999999999643
No 10
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=26.86 E-value=14 Score=25.75 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.0
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-..|+.+||.||..
T Consensus 94 ~~~a~~~G~~~~l~KP~~ 111 (128)
T d1jbea_ 94 IIAAAQAGASGYVVKPFT 111 (128)
T ss_dssp HHHHHHTTCSEEEESSCC
T ss_pred HHHHHHCCCCEEEECCCC
Confidence 445567899999999954
No 11
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=26.47 E-value=14 Score=25.44 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=14.2
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
+.++-+.|+.+||.||-.
T Consensus 86 ~~~a~~~Ga~d~l~KP~~ 103 (117)
T d2a9pa1 86 KVIGLELGADDYVTKPFS 103 (117)
T ss_dssp HHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 345668899999999953
No 12
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=26.28 E-value=14 Score=25.61 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=15.5
Q ss_pred HHHHHhhcceeeeccCCccC
Q 025986 35 LRQKAEKEGVHVYLQQPKMR 54 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~r 54 (245)
...++-+.|+..||.||-..
T Consensus 85 ~~~~a~~~Ga~dyl~KP~~~ 104 (120)
T d1p2fa2 85 SVLKGFEAGADDYVTKPFNP 104 (120)
T ss_dssp HHHHHHHHTCSEEEESSCCH
T ss_pred HHHHHHHCCCCEEEECCCCH
Confidence 34566788999999999543
No 13
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.15 E-value=15 Score=25.95 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.4
Q ss_pred HHHHHHhhcceeeeccCCccC
Q 025986 34 ELRQKAEKEGVHVYLQQPKMR 54 (245)
Q Consensus 34 ~lr~~ae~~GV~AyL~kP~~r 54 (245)
....++-+-|+.+||.||...
T Consensus 93 ~~~~~~~~~G~~~~l~KP~~~ 113 (128)
T d2r25b1 93 SNIKECLESGMNGFLSKPIKR 113 (128)
T ss_dssp HHHHHHHHTTCSEEEESSCCH
T ss_pred HHHHHHHHcCCCEEEECCCCH
Confidence 345667789999999999653
No 14
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.89 E-value=12 Score=25.91 Aligned_cols=29 Identities=38% Similarity=0.353 Sum_probs=20.2
Q ss_pred HHHHHHhhcceeeeccCCccCCCCCccchhhhhh
Q 025986 34 ELRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVL 67 (245)
Q Consensus 34 ~lr~~ae~~GV~AyL~kP~~r~rpN~RFL~atvR 67 (245)
..+.++-+.|+.+||.||-. ..-|.++|+
T Consensus 86 ~~~~~~~~~Ga~~yl~KP~~-----~~~L~~~i~ 114 (122)
T d1kgsa2 86 EYRVKGLNMGADDYLPKPFD-----LRELIARVR 114 (122)
T ss_dssp HHHHHTCCCCCSEEEESSCC-----HHHHHHHHH
T ss_pred HHHHHHHHcCCceeecCCCC-----HHHHHHHHH
Confidence 34567778999999999964 234555554
No 15
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=25.89 E-value=16 Score=25.29 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.0
Q ss_pred HHHHHhhcceeeeccCCcc
Q 025986 35 LRQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~ 53 (245)
...++-+.|+.+||.||..
T Consensus 88 ~~~~a~~~Ga~~yl~KP~~ 106 (118)
T d1u0sy_ 88 MVIEAIKAGAKDFIVKPFQ 106 (118)
T ss_dssp HHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 3456678899999999964
No 16
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=25.60 E-value=15 Score=25.38 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=14.5
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-+.|+.+||.||..
T Consensus 89 ~~~~~~~G~~d~l~KP~~ 106 (121)
T d1zesa1 89 RVRGLETGADDYITKPFS 106 (121)
T ss_dssp HHHHHHHTCSEEEESSCC
T ss_pred HHHHHHCCCCEEEECCCC
Confidence 456667899999999964
No 17
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.13 E-value=16 Score=25.69 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=15.0
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-..|+..||.||..
T Consensus 95 ~~~~~~~G~~~~l~KP~~ 112 (133)
T d2ayxa1 95 KQRCLESGMDSCLSKPVT 112 (133)
T ss_dssp HHHHHHCCCEEEEESSCC
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 456778999999999964
No 18
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=25.02 E-value=13 Score=25.58 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=14.2
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
+.++..-|+.+||.||..
T Consensus 90 ~~~~~~~G~~~~l~KP~~ 107 (123)
T d1mb3a_ 90 EERIREGGCEAYISKPIS 107 (123)
T ss_dssp HHHHHHHTCSEEECSSCC
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 345667799999999965
No 19
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=24.85 E-value=16 Score=25.39 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=15.5
Q ss_pred HHHHHhhcceeeeccCCccC
Q 025986 35 LRQKAEKEGVHVYLQQPKMR 54 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~r 54 (245)
...++-+.|+..||.||-..
T Consensus 89 ~~~~a~~~Ga~~yl~KP~~~ 108 (123)
T d1dbwa_ 89 MAVEAMKAGAVDFIEKPFED 108 (123)
T ss_dssp HHHHHHHTTCSEEEESSCCH
T ss_pred HHHHHHHCCCCEEEECCCCH
Confidence 34566788999999999653
No 20
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.45 E-value=16 Score=24.98 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.1
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
+.++-+-|+.+||.||..
T Consensus 87 ~~~a~~~Ga~dyl~KP~~ 104 (120)
T d1zgza1 87 RIVGLEMGADDYVTKPLE 104 (120)
T ss_dssp HHHHHHHTCSEEEESSCC
T ss_pred HHHHHHCCCCEEEECCCC
Confidence 345667799999999964
No 21
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.24 E-value=14 Score=25.40 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.7
Q ss_pred HHHhhcceeeeccCCcc
Q 025986 37 QKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 37 ~~ae~~GV~AyL~kP~~ 53 (245)
.++-+-|+.+||.||..
T Consensus 90 ~~~~~~Ga~~yl~KP~~ 106 (121)
T d1mvoa_ 90 VLGLELGADDYMTKPFS 106 (121)
T ss_dssp HHHHHTTCCEEEESSCC
T ss_pred HHHHHCCCCEEEECCCC
Confidence 45667899999999953
No 22
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=23.41 E-value=18 Score=24.99 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.4
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
..++-+.|+..||.||-.
T Consensus 87 ~~~a~~~Ga~~yl~KP~~ 104 (119)
T d2pl1a1 87 KVEVLSAGADDYVTKPFH 104 (119)
T ss_dssp HHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 445668899999999954
No 23
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=23.16 E-value=66 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=14.2
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
+.++-+.|+.+||.||..
T Consensus 90 ~~~a~~~Ga~dyl~KP~~ 107 (139)
T d1w25a1 90 RIQGLESGASDFLTKPID 107 (139)
T ss_dssp HHHHHHHTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 345567899999999964
No 24
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=23.00 E-value=54 Score=22.81 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=15.1
Q ss_pred HHHHHHhhcceeeeccCCcc
Q 025986 34 ELRQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 34 ~lr~~ae~~GV~AyL~kP~~ 53 (245)
+...++-+-|+..||.||..
T Consensus 91 ~~~~~al~~Ga~~yl~KP~~ 110 (140)
T d1a2oa1 91 EVTLRALELGAIDFVTKPQL 110 (140)
T ss_dssp HHHHHHHHHTCCEEEECSSS
T ss_pred HHHHHHHHcCCCEEEECCCC
Confidence 34455667899999999953
No 25
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=22.21 E-value=19 Score=25.86 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHHHhhcceeeeccCCcc
Q 025986 36 RQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~ 53 (245)
.+++-+-|+.+||.||..
T Consensus 107 ~~~~~~~Ga~~~l~KP~~ 124 (149)
T d1k66a_ 107 IEICYSYSISSYIVKPLE 124 (149)
T ss_dssp HHHHHHTTCSEEEECCSS
T ss_pred HHHHHHCCCCEEEECCCC
Confidence 456677899999999964
No 26
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.13 E-value=19 Score=24.94 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=19.3
Q ss_pred HHHHhhcceeeeccCCccCCCCCccchhhhhhh
Q 025986 36 RQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLG 68 (245)
Q Consensus 36 r~~ae~~GV~AyL~kP~~r~rpN~RFL~atvRG 68 (245)
+.++-+.|+.+||.||-. ..-|.++|+.
T Consensus 88 ~~~a~~~Ga~dyl~KP~~-----~~~L~~~v~~ 115 (121)
T d1xhfa1 88 KILGLEIGADDYITKPFN-----PRELTIRARN 115 (121)
T ss_dssp HHHHHHHTCSEEEESSCC-----HHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCC-----HHHHHHHHHH
Confidence 456778999999999964 2335555543
No 27
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.58 E-value=20 Score=24.69 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=13.7
Q ss_pred HHHhhcceeeeccCCcc
Q 025986 37 QKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 37 ~~ae~~GV~AyL~kP~~ 53 (245)
.++-+.|+.+||.||-.
T Consensus 87 ~~a~~~Ga~dyl~KP~~ 103 (119)
T d1zh2a1 87 IAALDAGADDYLSKPFG 103 (119)
T ss_dssp HHHHHHTCSEEEESSCC
T ss_pred HHHHHcCCCEEEECCCC
Confidence 45567899999999964
No 28
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.51 E-value=23 Score=24.93 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.1
Q ss_pred HHHHHhhcceeeeccCCcc
Q 025986 35 LRQKAEKEGVHVYLQQPKM 53 (245)
Q Consensus 35 lr~~ae~~GV~AyL~kP~~ 53 (245)
..+++..-|+.+||.||..
T Consensus 97 ~~~~~~~~G~~~~l~KP~~ 115 (134)
T d1dcfa_ 97 TKEKCMSFGLDGVLLKPVS 115 (134)
T ss_dssp HHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 3456778999999999954
Done!