BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025987
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
Length = 257
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 12/212 (5%)
Query: 34 QIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAK 93
+I ++ VSK KP S I+ +YD G R FGENYVQE+++KA LP+DIKWHF+G LQ+NK K
Sbjct: 41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 100
Query: 94 TLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSC 151
L VPNL VE + + K A L+++ + P+ VQ+NTS E+ KSG++ +
Sbjct: 101 D-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 159
Query: 152 LGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPEN--FRTLLNCRAEVCKALGMAEDQ 205
+ V L C ++ +GLMTIG + + + EN F TL+ + ++ G +
Sbjct: 160 IFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTS--- 216
Query: 206 CELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237
+LSMGMS DF +AI G+ VRIG+ IFG R
Sbjct: 217 LKLSMGMSADFREAIRQGTAEVRIGTDIFGAR 248
>pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs
Length = 234
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 125/237 (52%), Gaps = 18/237 (7%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I ++AVSKTKP S I + DAG R FGENYVQE VDK
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++WHF+G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PP 122
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 188
L VL+Q+N S E SKSGI + + V P L GLM I P+ E R
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQF 177
Query: 189 LNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 242
R G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 178 EVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein
Ybl036c-Selenomet Crystal
Length = 256
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 34 QIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAK 93
+I ++ VSK KP S I+ +YD G R FGENYVQE+++KA LP+DIKWHF+G LQ+NK K
Sbjct: 40 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 99
Query: 94 TLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSC 151
L VPNL VE + + K A L+++ + P+ VQ+NTS E+ KSG++ +
Sbjct: 100 D-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 158
Query: 152 LGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPEN--FRTLLNCRAEVCKALGMAEDQ 205
+ V L C ++ +GL TIG + + + EN F TL+ + ++ G +
Sbjct: 159 IFEVIDFFLSEECKYIKLNGLXTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTS--- 215
Query: 206 CELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237
+LS G S DF +AI G+ VRIG+ IFG R
Sbjct: 216 LKLSXGXSADFREAIRQGTAEVRIGTDIFGAR 247
>pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
pdb|3R79|B Chain B, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
Length = 244
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 119/229 (51%), Gaps = 21/229 (9%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V R+ AE+SGR + +VAVSKT I+ V DAG R FGEN VQE K P
Sbjct: 10 LEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWP 69
Query: 74 QLPE---DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
L E DI+ H +G LQSNKA V D+VE + EKIA L + + GR L+
Sbjct: 70 ALKEKTSDIELHLIGPLQSNKAAD---AVALFDVVESIDREKIARALSEECARQGRS-LR 125
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVR--LRCPNLEFSGLMTIGMPDYTSTPENFRTL 188
VQVNT E K+GIDP + V R L+ P GL I P P L
Sbjct: 126 FYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLP---VEGLXCI--PPAEENPGPHFAL 180
Query: 189 LNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237
L A C G+ +LS G SGDFE A+E G+TSVR+GS IFG R
Sbjct: 181 LAKLAGQC---GLE----KLSXGXSGDFETAVEFGATSVRVGSAIFGSR 222
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or70
Length = 245
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 120/237 (50%), Gaps = 18/237 (7%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I +VAVSKTKP S I + DAG R F E+YVQE VDK
Sbjct: 9 LAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIR 68
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++W+F G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 69 HFQELGVTGLEWNFAGPLQSNKSRLV---AEHFDWCITIDRLRIATRLNDQRPAEL--PP 123
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 188
L VL+Q+N S E SKSGI + + V P L GL I P+ E R
Sbjct: 124 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLSAIPAPE----SEYVRQF 178
Query: 189 LNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 242
R G+ L++G S D E AI GST V IG+ IFG R+Y+KK
Sbjct: 179 EVARQMAVAFAGLKTRYPHIDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSKK 235
>pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From
Bifidobacterium Adolescentis
Length = 282
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 122/247 (49%), Gaps = 29/247 (11%)
Query: 17 VLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP 76
VL R+ A E++GR +R++A +KT+ + I DAG R GEN QE+ KA L
Sbjct: 32 VLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIXAAIDAGVRXIGENRPQEVTAKAEGLA 91
Query: 77 ---------------------EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIAN 115
E I +H +G LQSNK +L P +D +E V + +A
Sbjct: 92 RRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVL---PVVDTIESVDSIDLAE 148
Query: 116 HLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG- 174
+ + G + VL++VN SGEESKSG DP+ + I + + +E GL TIG
Sbjct: 149 KISRRAVARG-ITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGT-LDGIELQGLXTIGA 206
Query: 175 -MPDYTSTPENFRTLLNCRAEVCKALGMAEDQC-ELSMGMSGDFEQAIEMGSTSVRIGST 232
+ D T F L R + + D+C ELS G +GD E AI GST VR+G+
Sbjct: 207 HVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSXGXTGDXELAIAEGSTIVRVGTA 266
Query: 233 IFGPREY 239
IFG R +
Sbjct: 267 IFGERAF 273
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 31 TQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVG 85
+QEQ + + T PV+ ++V+D + F ENY I+D P+++ HF G
Sbjct: 1681 SQEQGMGMDLYATSPVA--KEVWDRADKHFRENYGFSIIDIVKNNPKELTVHFGG 1733
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 130 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI--GMPDYTSTPENFRT 187
+ L Q+ G+++ + ++PS+ L +E+V C + +M++ G + PE
Sbjct: 103 RTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVC---DLILIMSVNPGFGGQSFIPEVLPK 159
Query: 188 LLNCRAEVCKALGMAEDQCELSMGMS-GDFEQAIEMGSTSVRIGSTIFGPREYAK 241
+ R ++C G+ + E+ G+ + Q +E G+ ++ GS +F YA+
Sbjct: 160 IRALR-QMCDERGL-DPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAE 212
>pdb|3OIR|A Chain A, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|3OIR|B Chain B, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|4DGF|A Chain A, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
pdb|4DGF|B Chain B, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
Length = 135
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS 122
L S + L G + +E +G E++ +H+DKA++
Sbjct: 88 LLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALA 123
>pdb|1URJ|A Chain A, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
pdb|1URJ|B Chain B, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
Length = 1136
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 173 IGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 232
G DYT P + + A +C+ LG+ D+ L + ++ F++A+ + +T + +G +
Sbjct: 123 FGFSDYTPRPGDLKHETTGEA-LCERLGLDPDRALLYLVVTEGFKEAVCINNTFLHLGGS 181
>pdb|3P3L|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
pdb|3P3L|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
Length = 406
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 58 RSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL 117
+ F + V++++DK PQ D HF L + LLG L+ + VG I +L
Sbjct: 118 QPFVRSTVEQLIDKLPQGDFDFVQHFAHPLPALVMCQLLGF--PLEDYDTVGRLSIETNL 175
Query: 118 DKAVSN 123
A+SN
Sbjct: 176 GLALSN 181
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 213 SGDFEQAIEMGSTSVRIGSTIFGPRE 238
SGD +A+ +G++SV IGS + G E
Sbjct: 258 SGDIGKALAVGASSVMIGSILAGTEE 283
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 213 SGDFEQAIEMGSTSVRIGSTIFGPRE 238
SGD +A+ +G++SV IGS + G E
Sbjct: 219 SGDIGKALAVGASSVMIGSILAGTEE 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,004,227
Number of Sequences: 62578
Number of extensions: 284104
Number of successful extensions: 799
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 16
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)