BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025987
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo
sapiens GN=PROSC PE=1 SV=1
Length = 275
Score = 230 bits (587), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/244 (52%), Positives = 164/244 (67%), Gaps = 18/244 (7%)
Query: 13 ALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
ALR+V RV+QA R R I R+VAVSKTKP ++ + Y G R+FGENYVQE+++
Sbjct: 16 ALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLE 75
Query: 71 KAPQ-----LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG 125
KA L +IKWHF+GHLQ L+ VPNL M+E V + K+A DK S+
Sbjct: 76 KASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLA---DKVNSSWQ 131
Query: 126 RK----PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYT 179
RK LKV+VQ+NTSGEESK G+ PS + IVEH+ +CPNLEF GLMTIG D +
Sbjct: 132 RKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLS 191
Query: 180 STPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPRE 238
P +F+ LL+ R E+CK L + DQ ELSMGMS DF+ A+E+GST+VRIGSTIFG R+
Sbjct: 192 QGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERD 251
Query: 239 YAKK 242
Y+KK
Sbjct: 252 YSKK 255
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus
musculus GN=Prosc PE=1 SV=1
Length = 274
Score = 227 bits (579), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/250 (50%), Positives = 170/250 (68%), Gaps = 14/250 (5%)
Query: 5 TVEGAAVTALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGE 62
T E ALR+V RV+Q+ R R I R+VAVSKTKP ++ + Y G R+FGE
Sbjct: 8 TAELGVGFALRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGE 67
Query: 63 NYVQEIVDKA--PQL----PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANH 116
NYVQE+++KA P++ PE IKWHF+GHLQ L+ VPNL M+E V + K+A+
Sbjct: 68 NYVQELLEKASNPKILSSCPE-IKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADK 125
Query: 117 LDKAVSNLG-RKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM 175
++ + G +PLKV+VQ+NTSGE+SK G+ PS + +VEH++ CP+LEF GLMTIG
Sbjct: 126 VNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGS 185
Query: 176 --PDYTSTPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 232
D + P +F+ LL R E+C+ LG+ +Q ELSMGMS DF+ AIE+GST+VRIGST
Sbjct: 186 FGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGST 245
Query: 233 IFGPREYAKK 242
IFG R+Y+KK
Sbjct: 246 IFGERDYSKK 255
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos
taurus GN=PROSC PE=2 SV=1
Length = 273
Score = 226 bits (577), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 165/242 (68%), Gaps = 14/242 (5%)
Query: 13 ALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
ALR+V RV+QA R R I R+VAVSKTKP ++ + Y G R+FGENYVQE+++
Sbjct: 16 ALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLE 75
Query: 71 KA--PQL----PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL 124
KA PQ+ PE IKWHF+GHLQ L+ VPNL M+E V + K+A+ ++ A
Sbjct: 76 KASNPQILSSCPE-IKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKK 133
Query: 125 GR-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYTST 181
G + LKV+VQ+NTSGE SK G+ P+ +VEH+ +CP+LEF GLMTIG D +
Sbjct: 134 GSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGHDLSQG 193
Query: 182 PE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 240
P +F+ LL+ R E+C+ LG +Q ELSMGMS DF+ AIE+GST+VRIGSTIFG R+Y+
Sbjct: 194 PNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYS 253
Query: 241 KK 242
KK
Sbjct: 254 KK 255
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo
abelii GN=PROSC PE=2 SV=1
Length = 275
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 161/241 (66%), Gaps = 12/241 (4%)
Query: 13 ALRSVLHRVRQAAERSGRTQEQI--RVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
ALR+V RV+QA R I R+VAVSKTKP ++ + Y G R+FGENYVQE+++
Sbjct: 16 ALRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLE 75
Query: 71 KAPQ-----LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG 125
KA L +IKWHF+GHLQ L+ VPNL ++E V + K+A ++ + G
Sbjct: 76 KASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKLAGKVNSSWQKKG 134
Query: 126 R-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM--PDYTSTP 182
+ LKV+VQ+NTSGEESK G+ PS + IVEH+ +CPNLEF GLMTIG D + P
Sbjct: 135 SPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGP 194
Query: 183 E-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 241
+F+ LL+ R E+CK L + DQ ELSMGMS DF+ AIE+GST+VRIGS IFG R+Y+K
Sbjct: 195 NPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGERDYSK 254
Query: 242 K 242
K
Sbjct: 255 K 255
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein
OS=Dictyostelium discoideum GN=prosc PE=3 SV=2
Length = 255
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 159/248 (64%), Gaps = 18/248 (7%)
Query: 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
+++ +++ RV + + R +++VAVSKTKP +IR +YD GHR FGENY+QE+V
Sbjct: 11 ISSYKNIKDRVEIISNKFDR--HNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVS 68
Query: 71 KAPQLPE--DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKP 128
K+ +L E +IKWHF+G +QSNK+K +L V NL +VE V N+KI + L K++ N
Sbjct: 69 KSEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENN 127
Query: 129 LK----------VLVQVNTSGEESKSGIDPSSCLGIVEHV--RLRCPN-LEFSGLMTIGM 175
+++QVNTSGEESKSG P CL +V+H C N L F GLMTIG
Sbjct: 128 NNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGN 187
Query: 176 PDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235
P+ T +F+ L++C+ + K L + D ELSMGMS DFE AIE GSTSVR+GS IFG
Sbjct: 188 PNATPDQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFG 247
Query: 236 PREYAKKQ 243
R+Y+ K+
Sbjct: 248 ERDYSNKK 255
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein
OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1
Length = 244
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 137/238 (57%), Gaps = 10/238 (4%)
Query: 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKA 72
+L +++ V A S T+ + R+VAVSKTK LI Y R FGENYVQE+ +K+
Sbjct: 9 SLFNIIEAVADAVTASQATK-RCRLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKS 67
Query: 73 PQLPE---DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK-- 127
L DI+WHF+G +QSNK + P L VE V EK A DK S G
Sbjct: 68 DVLASKCLDIRWHFIGQVQSNKIGKICNS-PGLWCVETVETEKHARIFDKEWSKHGANLS 126
Query: 128 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT-STPEN-- 184
PL+VLVQVNTSGE++K GI+ + E +R C NL+F G MTIG D + ++ EN
Sbjct: 127 PLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPD 186
Query: 185 FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 242
F L R + G + D ELSMGMS DF QAI G+TSVR+GS +FG REY K
Sbjct: 187 FEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAREYKNK 244
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1
Length = 236
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 138/232 (59%), Gaps = 21/232 (9%)
Query: 20 RVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKA------- 72
++ A ++ GR + ++++AVSKTKPV I + AG R FGENYVQE VDK
Sbjct: 14 QIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHH 73
Query: 73 PQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVL 132
PQL ++WHF+G LQSNK + + + D V + EKIA L + + PL+VL
Sbjct: 74 PQLA--LEWHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLSEQ-RPVNMPPLQVL 127
Query: 133 VQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI--GMPDYTSTPENFRTLLN 190
+QVNTSGE SKSGI+P + E + R PNL GLM+I +PDY + F L
Sbjct: 128 IQVNTSGEASKSGIEPQQLFTLAELIS-RLPNLTLRGLMSIPENVPDYPAQLAAFTQL-- 184
Query: 191 CRAEVCKALGMAEDQCE-LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 241
AE+ + L Q + LSMGMSGD + AIE GST VRIG+ IFG R+Y++
Sbjct: 185 --AELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYSR 234
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio
alginolyticus PE=3 SV=1
Length = 233
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 17/235 (7%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
+ + ++R ++ GRT E ++++AVSKTKPV I + Y AG +FGENYVQE V K
Sbjct: 8 IEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQ 67
Query: 74 QLPED-----IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRK 127
E I+WHF+G +QSNK++ + + D V + KIA L D+ S L K
Sbjct: 68 HFAEHYPDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQRPSEL--K 122
Query: 128 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI--GMPDYTSTPENF 185
PL+VL+QVNTSGE SKSG+ + + E + R PNL GLM+I + DY S F
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELIS-RLPNLTLRGLMSIPANVSDYESQLHEF 181
Query: 186 RTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 240
+ L + + + LSMGMSGD AIE GST VRIG+ IFG R+Y+
Sbjct: 182 QKLATLKQTLEAQFPEIDT---LSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70)
GN=PM0112 PE=3 SV=1
Length = 233
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 11/233 (4%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L + ++ A +++ R + ++++AVSKTKPV I Q Y AG +FGENYVQE V+K
Sbjct: 7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQ 66
Query: 74 QLPED---IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
+ ++WHF+G LQSNK K + + D ++ + +KIA+ L++ + +KPL
Sbjct: 67 YFAQKNIPLEWHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLNEQRPHY-KKPLN 122
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFRTL 188
VL+Q+N S E+SKSGI P+ L + + ++ P+L GLM I P D + + F +
Sbjct: 123 VLIQINISDEDSKSGIQPNEMLDLAKQIQ-NLPHLCLRGLMAIPAPTDDLATQEQAFTQM 181
Query: 189 LNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 241
+ ++ +AL A+ LSMGM+ D AI+ GST VRIG+ IFG R+Y+K
Sbjct: 182 HSLFEQLKQALPDAQIDT-LSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK 233
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC644.09 PE=3 SV=1
Length = 237
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 136/230 (59%), Gaps = 10/230 (4%)
Query: 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
++ + S L +R ++S + + +VAVSK PV + + Y+AG R FGENY+QE +
Sbjct: 1 MSTIHSCLDLIRSQIQQSANGRN-VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLK 59
Query: 71 KAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
K +P+D++WHF+G LQS+K K + V NL +E + EK A ++ A L + PL
Sbjct: 60 KVELMPDDVQWHFIGSLQSSKCKK-IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLN 117
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPE---NFRT 187
V +QVNTSGEE+K G+ PS L + + V+ L GLMTIG + + +F+
Sbjct: 118 VYIQVNTSGEENKGGVTPSKVLELCKQVQ-DMKYLRLKGLMTIGSISNSQLSDHNPDFQV 176
Query: 188 LLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237
L + R + LG+ +LSMGMS D+ AI+ GS SVR+GS+IFG R
Sbjct: 177 LSDLRESLQNELGIP---LQLSMGMSSDYLLAIKYGSDSVRVGSSIFGSR 223
>sp|O66631|Y274_AQUAE UPF0001 protein aq_274 OS=Aquifex aeolicus (strain VF5) GN=aq_274
PE=3 SV=1
Length = 228
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 141/237 (59%), Gaps = 18/237 (7%)
Query: 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIV 69
A L VL R+++A ER+GR + +++ SKT P +IR+ Y+ G + +GEN VQE +
Sbjct: 3 ACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFL 62
Query: 70 DKAPQLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV--SNLGR 126
K L + D++WHF+G LQ+NK K L+G V ++ + + +A+ + K +N+ +
Sbjct: 63 KKYEALKDLDLEWHFIGRLQTNKVKYLMGKVV---LIHSLDRKNLADEIQKRAFKNNIVQ 119
Query: 127 KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPEN-- 184
VL++VN GEE+K G++P + + E+ L PN++ GLMTI P Y PE+
Sbjct: 120 ---DVLIEVNVGGEETKGGVEPENLKELFEYT-LELPNVKVLGLMTI--PPYLENPEDVR 173
Query: 185 --FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 239
FR L R E+ + +A LSMGMS DFE AIE G+T VRIG+ +FG R+Y
Sbjct: 174 PYFRKLRELRDELQREYNVALPH--LSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228
>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1
Length = 237
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 133/235 (56%), Gaps = 11/235 (4%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L + ++ A + R Q ++++AVSKTKP+S I Y AG +FGENYVQE V+K
Sbjct: 7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQ 66
Query: 74 QLPE---DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
+++WHF+G LQSNK + + + D ++ + KIA+ L++ + PL
Sbjct: 67 YFESQGINLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLN 122
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTSTPEN-FRTL 188
VL+Q+N S EESKSGI P L + +H+ P+L GLM I P D + EN FR +
Sbjct: 123 VLIQINISDEESKSGIQPEEMLTLAKHIE-NLPHLCLRGLMAIPAPTDNIAEQENAFRKM 181
Query: 189 LNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQ 243
L ++ + L + LSMGM+ D AI+ GST VRIG+ IFG R Y+ Q
Sbjct: 182 LELFEQLKQVLPNQQIDT-LSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYSTSQ 235
>sp|P38197|YBD6_YEAST UPF0001 protein YBL036C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YBL036C PE=1 SV=1
Length = 257
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 129/212 (60%), Gaps = 12/212 (5%)
Query: 34 QIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAK 93
+I ++ VSK KP S I+ +YD G R FGENYVQE+++KA LP+DIKWHF+G LQ+NK K
Sbjct: 41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 100
Query: 94 TLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSC 151
L VPNL VE + + K A L+++ + P+ VQ+NTS E+ KSG++ +
Sbjct: 101 D-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAE 159
Query: 152 LGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPEN--FRTLLNCRAEVCKALGMAEDQ 205
+ V L C ++ +GLMTIG + + + EN F TL+ + ++ G +
Sbjct: 160 IFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTS--- 216
Query: 206 CELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237
+LSMGMS DF +AI G+ VRIG+ IFG R
Sbjct: 217 LKLSMGMSADFREAIRQGTAEVRIGTDIFGAR 248
>sp|P67080|YGGS_ECOLI UPF0001 protein YggS OS=Escherichia coli (strain K12) GN=yggS PE=1
SV=1
Length = 234
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 125/237 (52%), Gaps = 18/237 (7%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I ++AVSKTKP S I + DAG R FGENYVQE VDK
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++WHF+G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PP 122
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 188
L VL+Q+N S E SKSGI + + V P L GLM I P+ E R
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQF 177
Query: 189 LNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 242
R G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 178 EVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P67081|YGGS_ECOL6 UPF0001 protein YggS OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yggS PE=3 SV=1
Length = 234
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 125/237 (52%), Gaps = 18/237 (7%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I ++AVSKTKP S I + DAG R FGENYVQE VDK
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++WHF+G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PP 122
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 188
L VL+Q+N S E SKSGI + + V P L GLM I P+ E R
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQF 177
Query: 189 LNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 242
R G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 178 EVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P67082|YGGS_ECO57 UPF0001 protein YggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1
Length = 234
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 125/237 (52%), Gaps = 18/237 (7%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
L V ++ AA R GR+ E+I ++AVSKTKP S I + DAG R FGENYVQE VDK
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 74 QLPE----DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKP 128
E ++WHF+G LQSNK++ + + D + +IA L D+ + L P
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PP 122
Query: 129 LKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 188
L VL+Q+N S E SKSGI + + V P L GLM I P+ E R
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQF 177
Query: 189 LNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 242
R G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 178 EVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>sp|P24562|Y394_PSEAE UPF0001 protein PA0394 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0394 PE=3 SV=1
Length = 230
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 120/224 (53%), Gaps = 10/224 (4%)
Query: 17 VLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP 76
V R+R+AA+ +GR + ++AVSKTKP + +R+ + AG R FGENY+QE + K +L
Sbjct: 11 VAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELA 70
Query: 77 E-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV 135
+ + WHF+G +QSNK + + + V V KIA L + G PL V +QV
Sbjct: 71 DLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQV 126
Query: 136 NTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEV 195
N SGE SKSG P + E V+ + PNL GLM I P T E
Sbjct: 127 NVSGEASKSGCAPEDLPALAEAVK-QLPNLRLRGLMAIPEP----TAERAAQHAAFARLR 181
Query: 196 CKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 239
L + LSMGMS D E AI G+T VRIG+ +FG R+Y
Sbjct: 182 ELLLDLNLGLDTLSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225
>sp|P52056|Y556_SYNY3 UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0556 PE=3 SV=1
Length = 218
Score = 114 bits (284), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 25/214 (11%)
Query: 35 IRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSNKA 92
+R+VAV+KTK ++ I Y AG R F E+ +QE + K L +DI WHF+G LQSNKA
Sbjct: 18 VRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQSNKA 77
Query: 93 KTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCL 152
+ + V N + V N IA LD+ L + P + L+Q+ +E+KSG
Sbjct: 78 RKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSG------- 126
Query: 153 GIVEHVRLRCP------NLEFSGLMTIGMPDYTSTPE---NFRTLLNCRAEVCKALGMAE 203
E ++L P NL+ GLMTI +P S + F L N + + ++
Sbjct: 127 WTREELKLDLPQLELLKNLKICGLMTI-LPLGLSPGDRQLTFGELKNLATAINQQSSLS- 184
Query: 204 DQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237
ELSMGMSGD+ +AI G+T +R+G+ +FG R
Sbjct: 185 -LTELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217
>sp|O25156|Y395_HELPY UPF0001 protein HP_0395 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=HP_0395 PE=3 SV=1
Length = 222
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 17/227 (7%)
Query: 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
+ AL + + + R A R +++VAVSK I+ Y+ R+FGEN VQ++
Sbjct: 8 IDALITKIEKARTAYSR----HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 71 KAPQLPE-DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPL 129
K L ++WH +G LQ NK LL P L + + + K+A ++K LG L
Sbjct: 64 KMHSLEHLPLEWHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-L 120
Query: 130 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG--MPDYTSTPENFRT 187
L+QVN++ EESKSG+ P L I + C +L+ GLM IG D ++F T
Sbjct: 121 NALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFIT 180
Query: 188 LLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234
K ++ LSMGMS DFE AI G+ +RIGS +F
Sbjct: 181 -------TKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>sp|O31727|YLME_BACSU UPF0001 protein YlmE OS=Bacillus subtilis (strain 168) GN=ylmE PE=3
SV=1
Length = 230
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 12/228 (5%)
Query: 11 VTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD 70
V LR + R+ +A RSGR+ +++ V+AV+K ++ DAG GEN E++
Sbjct: 4 VDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLR 63
Query: 71 KAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLK 130
K + + +WHF+G LQS KAK+++ V + ++ + L K + ++
Sbjct: 64 KQELMKGNPEWHFIGSLQSRKAKSVVNSVSYIHSLDRLS-------LAKEIEKRAEGTVR 116
Query: 131 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG--MPDYTSTPENFRTL 188
VQVNTS E SK G+ + ++ + ++ +GLMT+ D FR+L
Sbjct: 117 CFVQVNTSLEPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPLTDDQDQIRSCFRSL 175
Query: 189 LNCRAEVCKALGMAEDQC-ELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235
R +V K L C ELSMGMS DFE AIE G+T +RIGS++ G
Sbjct: 176 RELRDQVQK-LNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>sp|Q9ZKF2|Y395_HELPJ UPF0001 protein jhp_0986 OS=Helicobacter pylori (strain J99)
GN=jhp_0986 PE=3 SV=1
Length = 222
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 104/203 (51%), Gaps = 13/203 (6%)
Query: 35 IRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE-DIKWHFVGHLQSNKAK 93
+++VAVSK I+ Y+ R+FGEN VQ++ K L ++WH +G LQ NK
Sbjct: 28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGSLQENKIN 87
Query: 94 TLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLG 153
LL P L + + + K+A ++K LG L L+QVN++ EESKSG+ P L
Sbjct: 88 ALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALE 144
Query: 154 IVEHVRLRCPNLEFSGLMTIG--MPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211
+ C L+ GLM IG D T ++F T K ++ LSMG
Sbjct: 145 TYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTT-------TKKLFDQIKNASVLSMG 197
Query: 212 MSGDFEQAIEMGSTSVRIGSTIF 234
MS DFE AI G+ +RIGS +F
Sbjct: 198 MSDDFELAIACGANLLRIGSFLF 220
>sp|Q8K929|Y531_BUCAP UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_531 PE=3 SV=1
Length = 229
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 16/208 (7%)
Query: 33 EQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSN 90
++I+++AVSK + + I+ +G FGENYVQE +DK +L ++I WHF+G +QSN
Sbjct: 27 KKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFIGKVQSN 86
Query: 91 KAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS 150
K K + N D + + EKIA L+K P+ VL+Q+N S E +K+GI +
Sbjct: 87 KTKII---AENFDWCQTIDREKIAILLNKYREKKSF-PMNVLMQINISNEVTKNGICIKN 142
Query: 151 CLGIVEHVRLRCPNLEFSGLMTIGMPD----YTSTPENFRTLLNCRAEVCKALGMAEDQC 206
+ + + L PNL F G+M MP+ +N++ E+ K +
Sbjct: 143 YKKLAKTISL-MPNLNFRGIMM--MPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDT-- 197
Query: 207 ELSMGMSGDFEQAIEMGSTSVRIGSTIF 234
LS+G S D E A+ S +RIG IF
Sbjct: 198 -LSLGTSFDIENALLFHSNMIRIGRFIF 224
>sp|Q9RUL6|Y1368_DEIRA UPF0001 protein DR_1368 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_1368 PE=3 SV=1
Length = 209
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 108/220 (49%), Gaps = 17/220 (7%)
Query: 16 SVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIR-QVYDAGHRSFGENYVQEIVDKAPQ 74
+VL +R+A ++GR +R+VAV+K + IR QV G EN QE+ DK
Sbjct: 5 AVLAGIREAEAQAGRAAGTVRLVAVTKGHSLDEIRGQVLAHGDFPLAENRGQELRDKVAG 64
Query: 75 LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQ 134
LP +WHF+G LQ NK K L G + +V + A + A + G+ P +L +
Sbjct: 65 LP-GAEWHFIGPLQRNKIKYLRG----VTLVHSIEEPWQAQAIADAAAEWGQAPAVLLQR 119
Query: 135 VNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAE 194
N GE K G+ P ++ VR LE GLM M Y + + A
Sbjct: 120 HN--GEGQKHGVLPDDLPAVLREVR--ATGLEVRGLMA--MAPYDDEARAAQVFADT-AR 172
Query: 195 VCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234
+ LG+ ELSMGMSGD+ A+ G+T VR+G ++F
Sbjct: 173 QAQDLGL----VELSMGMSGDYPLAVAAGATLVRVGRSLF 208
>sp|Q9CCE2|Y919_MYCLE UPF0001 protein ML0919 OS=Mycobacterium leprae (strain TN)
GN=ML0919 PE=3 SV=2
Length = 257
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 20/239 (8%)
Query: 13 ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKA 72
AL +V R+ A++ +GR +I ++ +SK P + + + G RS GE+ QE KA
Sbjct: 18 ALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKA 77
Query: 73 PQLPE----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS 122
+ E I WH VG +Q NK ++L ++ + + A
Sbjct: 78 AEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAAL 137
Query: 123 NLGRK--PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC---PNLEFSGLMTIGMPD 177
GR+ PL+V VQ++ G+ S+ G++ ++ G V+ V + +LE GLM G+P
Sbjct: 138 AGGRREQPLQVYVQISLDGDISRGGVNVTAP-GAVDRVCAQVEESKSLELVGLM--GIPP 194
Query: 178 YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 236
P+ + R E + L D LS GMS DFE A++ GST VR+G+ + GP
Sbjct: 195 LGWNPD--QAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 251
>sp|P57614|Y549_BUCAI UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=BU549 PE=3 SV=1
Length = 200
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 33 EQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP--EDIKWHFVGHLQSN 90
++I ++AVSK + ++ I + +G +FGENY+QE + K L ++I WHF+G +QSN
Sbjct: 2 KKITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSN 61
Query: 91 KAKTLLGGVPNLDMVEGVGNEKIANHLDKAV-SNLGRKPLKVLVQVNTSGE-ESKSGIDP 148
K K + N + V EKIA L+K NL P+ VL+Q+N E ++ ID
Sbjct: 62 KTKKI---AQNFSWCQTVDREKIAVLLNKFRPKNLP--PINVLIQINNLKELQNNRYIDQ 116
Query: 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMPDY-TSTPENFRTLLNCRAEVCKAL-GMAEDQC 206
L + L PNL G+M + P T+ EN N + E K + + Q
Sbjct: 117 YQELA---QLILSMPNLNLRGIMAV--PSIKTNVIEN-----NLQYEKIKTIFNRFKRQY 166
Query: 207 E----LSMGMSGDFEQAIEMGSTSVRIGSTIFG 235
LS+G S D ++++ S VRIG IF
Sbjct: 167 SSVDTLSLGTSVDIKESLLATSNMVRIGRNIFN 199
>sp|P67084|Y2172_MYCBO UPF0001 protein Mb2172c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2172c PE=3 SV=1
Length = 258
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 121/260 (46%), Gaps = 37/260 (14%)
Query: 2 AAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFG 61
A P E AL ++ R+ AAE +GR +I ++ ++K P + + ++ G RS G
Sbjct: 7 AYPDRESELTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVG 66
Query: 62 ENYVQEIVDKAPQLPE-----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGN 110
E+ QE K +L + WH VG +Q NKA +L V +
Sbjct: 67 ESREQEASAKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHT---AHSVDS 123
Query: 111 EKIANHLDKAV------SNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 164
++ LD+AV G + L+V VQV+ G+ S+ G+D S+ G V+ + C
Sbjct: 124 SRLVTALDRAVVAALAEHRRGER-LRVYVQVSLDGDGSRGGVD-STTPGAVDRI---CAQ 178
Query: 165 ------LEFSGLMTIGMPDYTSTP-ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE 217
LE GLM G+P P E F L ++E + M LS GMS D E
Sbjct: 179 VQESEGLELVGLM--GIPPLDWDPDEAFDRL---QSEHNRVRAMFPHAIGLSAGMSNDLE 233
Query: 218 QAIEMGSTSVRIGSTIFGPR 237
A++ GST VR+G+ + GPR
Sbjct: 234 VAVKHGSTCVRVGTALLGPR 253
>sp|P67083|Y2148_MYCTU UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis
GN=Rv2148c PE=3 SV=1
Length = 258
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 121/260 (46%), Gaps = 37/260 (14%)
Query: 2 AAPTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFG 61
A P E AL ++ R+ AAE +GR +I ++ ++K P + + ++ G RS G
Sbjct: 7 AYPDRESELTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVG 66
Query: 62 ENYVQEIVDKAPQLPE-----------DIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGN 110
E+ QE K +L + WH VG +Q NKA +L V +
Sbjct: 67 ESREQEASAKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHT---AHSVDS 123
Query: 111 EKIANHLDKAV------SNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 164
++ LD+AV G + L+V VQV+ G+ S+ G+D S+ G V+ + C
Sbjct: 124 SRLVTALDRAVVAALAEHRRGER-LRVYVQVSLDGDGSRGGVD-STTPGAVDRI---CAQ 178
Query: 165 ------LEFSGLMTIGMPDYTSTP-ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE 217
LE GLM G+P P E F L ++E + M LS GMS D E
Sbjct: 179 VQESEGLELVGLM--GIPPLDWDPDEAFDRL---QSEHNRVRAMFPHAIGLSAGMSNDLE 233
Query: 218 QAIEMGSTSVRIGSTIFGPR 237
A++ GST VR+G+ + GPR
Sbjct: 234 VAVKHGSTCVRVGTALLGPR 253
>sp|Q89A48|Y497_BUCBP UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=bbp_497 PE=3 SV=1
Length = 223
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 14 LRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAP 73
++ + ++ +++ ++I+++AVSK + V+ I++ G SFGENYVQE K
Sbjct: 8 IKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQESQPKI- 66
Query: 74 QLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLV 133
+L +I+WH++G +QSNKA + N + N+K A L+K L L+
Sbjct: 67 KLFNNIEWHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNKYRP-YSLPKLNTLI 122
Query: 134 QVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTP----ENFRTLL 189
Q+N D + + + + NL G+M MP + +T ++++ +
Sbjct: 123 QINIRDNTINIDDDIETIKQLAKTIN-SLDNLNLRGIM--AMPYFKNTYLEQIQSYK-YI 178
Query: 190 NCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234
+ ++ K D +S+G S D + A+ GST +RIGS+IF
Sbjct: 179 HLYFDILKKKYTYID--TVSLGTSHDIQAALYSGSTLLRIGSSIF 221
>sp|O24748|Y2153_CORGL UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=Cgl2153 PE=3 SV=2
Length = 221
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 20 RVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDI 79
R+ R + +R++ V+K PV I+ + + G + GEN QE KA +LP D+
Sbjct: 4 RIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELP-DM 62
Query: 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVS------NLGRKPLKVLV 133
+H +G +QS KA ++ V V +EKIA L + V+ + L +
Sbjct: 63 DFHMIGQIQSKKANSIARWAA---AVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFI 119
Query: 134 QVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRA 193
Q++ G+ S+ G S + + + +L F GLM + P PE + R
Sbjct: 120 QLSLDGDPSRGGTPLSQVTQLADCIS-DTTHLRFEGLMCV--PPLGWGPE--KAFSQARD 174
Query: 194 EVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 240
+ + E S GMSGD AI+ GST VR+G+ I G R A
Sbjct: 175 VLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRPLA 221
>sp|B3EPX5|RIMO_CHLPB Ribosomal protein S12 methylthiotransferase RimO OS=Chlorobium
phaeobacteroides (strain BS1) GN=rimO PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 170
E I ++LD V ++ + L + K GID +G++E +R R PN+
Sbjct: 249 ENICDYLDMPVQHICDRILASM----------KRGIDKQGTIGLLESIRKRNPNIRLRTT 298
Query: 171 MTIGMP 176
M +G P
Sbjct: 299 MIVGYP 304
>sp|B4S8Z6|RIMO_PROA2 Ribosomal protein S12 methylthiotransferase RimO
OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
GN=rimO PE=3 SV=1
Length = 433
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 102 LDMVEGV-GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRL 160
LD+++ + + I N+LD V ++ + LK + + GID +G++E +R
Sbjct: 232 LDVIDTMREHANICNYLDMPVQHISDRILKSM----------QRGIDKKGTIGLLESIRK 281
Query: 161 RCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEV 195
+ P++ M +G P T F LL A++
Sbjct: 282 KNPDIRLRTTMIVGYP--GETDREFDELLEFVAQL 314
>sp|A8MLX7|RIMO_ALKOO Ribosomal protein S12 methylthiotransferase RimO OS=Alkaliphilus
oremlandii (strain OhILAs) GN=rimO PE=3 SV=1
Length = 438
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 83/189 (43%), Gaps = 36/189 (19%)
Query: 2 AAPTVEGAAVT-ALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSF 60
A P ++G ++ + +L R A++ + ++ V+A TK G +
Sbjct: 155 AIPNIQGPYISRTMEDILKEARNLAKQGIK---ELIVIAQDTTK----------YGLDIY 201
Query: 61 GENYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVG-NEKIANHLDK 119
GE + +++++ ++ EDI+W ++ ++++ VG N+KI N+ D
Sbjct: 202 GEARLPQLLEELCKI-EDIEWVRFLYVYPESITD--------ELIKVVGENDKICNYFDI 252
Query: 120 AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT 179
+ ++ LK ++N D +S I+E +R P++ + +G P
Sbjct: 253 PIQHISDSVLK---RMNRKS-------DGASVRNIIEKIRREIPDVIIRTTLIVGFP--G 300
Query: 180 STPENFRTL 188
T E+F+ L
Sbjct: 301 ETEEDFKEL 309
>sp|B3EDL2|RIMO_CHLL2 Ribosomal protein S12 methylthiotransferase RimO OS=Chlorobium
limicola (strain DSM 245 / NBRC 103803) GN=rimO PE=3
SV=1
Length = 429
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 170
E + N+LD + ++ + L+ + GID + + ++E +R R P++
Sbjct: 238 ENVCNYLDMPLQHISDRILRSM----------NRGIDSTGTVRLIESIRQRNPDIRLRTT 287
Query: 171 MTIGMPDYTSTPENFRTLLNCRAE 194
M G P T E F LL AE
Sbjct: 288 MIAGYP--GETGEEFEELLQFVAE 309
>sp|Q8V294|POLN_EEVVC Non-structural polyprotein OS=Venezuelan equine encephalitis virus
(strain CPA201) PE=2 SV=2
Length = 2496
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 4 PTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGEN 63
PT+ A +A+++ L V AA + Q+R + V + ++ A + + E
Sbjct: 2069 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2128
Query: 64 YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV 121
Y + + +L E+ +++ L+ KA L NLDM++ + ++ L + V
Sbjct: 2129 YKKNPI----RLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDV 2182
>sp|Q3MAX6|HIS82_ANAVT Histidinol-phosphate aminotransferase 2 OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=hisC2 PE=3 SV=1
Length = 380
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 70 DKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPL 129
D P+L + + W F ++SN+ GG L + IA +++++ +N+ P+
Sbjct: 42 DLPPELKQKLAWTFQQVIESNRYPD--GGHEEL-------KDAIAQYVNES-ANISSSPI 91
Query: 130 KVL-VQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM--TIGMPDYTST--PEN 184
+ V +E + ++CLG + + P G++ T+G+P T + PEN
Sbjct: 92 TAANISVGNGSDELIRSLLIATCLGAQGSILVANPTFSMYGILAQTLGIPVVTVSRNPEN 151
Query: 185 F 185
F
Sbjct: 152 F 152
>sp|P37415|YTL2_SALTY Uncharacterized protein pSLT051 OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=PSLT051 PE=3 SV=1
Length = 313
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEI 68
AA+T L+ +H+ R AE R + +S ++ +SL+ + AG S E +V+E+
Sbjct: 175 AALTLLQKHIHQ-RDLAELVDRLAPILLAGYLSSSQVISLVHYIVQAGETSDAEAFVREL 233
Query: 69 VDKAPQ 74
+ PQ
Sbjct: 234 AQRVPQ 239
>sp|Q9WJC7|POLN_EEVVM Non-structural polyprotein OS=Venezuelan equine encephalitis virus
(strain Mena II) PE=2 SV=2
Length = 2498
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 4 PTVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGEN 63
PT+ A +A+++ L V AA + Q+R + V + ++ A + + E
Sbjct: 2071 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2130
Query: 64 YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAV 121
Y + + +L E+ +++ L+ KA L NLDM++ + ++ L + V
Sbjct: 2131 YKKNPI----RLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDV 2184
>sp|Q8RB70|HRCA_THETN Heat-inducible transcription repressor HrcA OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=hrcA PE=3 SV=1
Length = 343
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 102 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLR 161
+ + + N+KIA +KA+ N K LK +T G+ + + +++ + L
Sbjct: 173 FEFLNNLLNDKIAGKSEKAIFNFLEKELK-----DTLGDMAFMADE------LIKTILLS 221
Query: 162 CPNLEFSGLMTIG------MPDY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 213
L+ + + T G P+Y + +NF +LL+ ++ + + L +D ++ +G
Sbjct: 222 LKQLQETDVYTDGTLHILDFPEYKDLNKAKNFLSLLDNKSLLNEVLEPVDDFVDVKIGRE 281
Query: 214 GDFEQAIEMG--STSVRIGSTIFG 235
FE+ E+ T+ +I + G
Sbjct: 282 NRFEEMRELSVIKTTYKINDRVVG 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,140,096
Number of Sequences: 539616
Number of extensions: 3687039
Number of successful extensions: 10283
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10167
Number of HSP's gapped (non-prelim): 52
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)