Query 025987
Match_columns 245
No_of_seqs 176 out of 1150
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0325 Predicted enzyme with 100.0 1.2E-47 2.6E-52 321.9 23.8 223 9-239 2-228 (228)
2 cd06824 PLPDE_III_Yggs_like Py 100.0 1.8E-45 4E-50 315.0 25.9 216 10-236 2-224 (224)
3 cd06822 PLPDE_III_YBL036c_euk 100.0 3E-45 6.5E-50 313.2 25.8 221 10-235 1-227 (227)
4 TIGR00044 pyridoxal phosphate 100.0 4.2E-45 9.1E-50 313.8 26.8 222 8-237 2-229 (229)
5 cd00635 PLPDE_III_YBL036c_like 100.0 2.3E-42 5.1E-47 295.3 24.5 219 10-235 1-222 (222)
6 PF01168 Ala_racemase_N: Alani 100.0 1.1E-41 2.5E-46 289.3 22.7 209 6-238 2-218 (218)
7 KOG3157 Proline synthetase co- 100.0 2.7E-40 5.8E-45 271.0 21.6 237 1-242 1-242 (244)
8 cd06815 PLPDE_III_AR_like_1 Ty 100.0 5.4E-40 1.2E-44 298.6 24.1 214 6-240 7-230 (353)
9 COG0787 Alr Alanine racemase [ 100.0 2.3E-40 5E-45 298.2 20.9 205 6-241 10-227 (360)
10 cd06825 PLPDE_III_VanT Type II 100.0 2.5E-39 5.4E-44 295.7 22.3 207 6-240 7-226 (368)
11 cd06826 PLPDE_III_AR2 Type III 100.0 1.9E-38 4.1E-43 289.7 22.8 214 6-239 7-230 (365)
12 TIGR00492 alr alanine racemase 100.0 5.4E-38 1.2E-42 286.7 22.8 212 6-240 8-230 (367)
13 PRK03646 dadX alanine racemase 100.0 2.8E-38 6.1E-43 287.4 19.8 201 6-240 9-218 (355)
14 PRK11930 putative bifunctional 100.0 2.4E-36 5.3E-41 300.8 23.5 211 6-240 465-687 (822)
15 PRK00053 alr alanine racemase; 100.0 2.9E-36 6.4E-41 275.0 22.0 208 6-240 9-227 (363)
16 PRK13340 alanine racemase; Rev 100.0 1.7E-35 3.7E-40 273.7 23.8 211 6-238 46-269 (406)
17 cd00430 PLPDE_III_AR Type III 100.0 2.3E-35 5.1E-40 269.2 23.6 213 6-241 7-229 (367)
18 cd06827 PLPDE_III_AR_proteobac 100.0 1.5E-35 3.2E-40 269.5 20.5 201 6-240 7-218 (354)
19 cd07376 PLPDE_III_DSD_D-TA_lik 100.0 1.3E-35 2.8E-40 268.8 19.4 213 9-240 1-228 (345)
20 cd06821 PLPDE_III_D-TA Type II 100.0 1.4E-34 2.9E-39 263.6 17.1 216 6-239 15-242 (361)
21 cd06817 PLPDE_III_DSD Type III 100.0 7.6E-34 1.6E-38 260.9 21.4 220 6-240 12-259 (389)
22 cd06820 PLPDE_III_LS_D-TA_like 100.0 1.3E-33 2.9E-38 256.4 19.3 215 6-239 9-234 (353)
23 cd06814 PLPDE_III_DSD_D-TA_lik 100.0 4.8E-32 1E-36 248.4 21.9 214 6-239 15-252 (379)
24 cd06811 PLPDE_III_yhfX_like Ty 100.0 2.4E-31 5.1E-36 244.2 24.2 212 6-240 34-266 (382)
25 cd06813 PLPDE_III_DSD_D-TA_lik 100.0 1.6E-29 3.4E-34 232.7 21.3 214 6-239 17-266 (388)
26 cd06819 PLPDE_III_LS_D-TA Type 100.0 1.5E-29 3.3E-34 230.1 18.2 216 6-239 13-241 (358)
27 cd06808 PLPDE_III Type III Pyr 100.0 4.6E-29 1E-33 210.0 19.0 202 10-231 1-211 (211)
28 cd06812 PLPDE_III_DSD_D-TA_lik 100.0 5.1E-28 1.1E-32 221.4 22.0 215 6-239 12-240 (374)
29 cd06818 PLPDE_III_cryptic_DSD 100.0 3.3E-27 7.1E-32 216.9 22.6 219 6-238 9-249 (382)
30 COG3457 Predicted amino acid r 99.9 4.3E-23 9.4E-28 179.8 20.3 212 12-237 8-230 (353)
31 COG3616 Predicted amino acid a 99.9 4.9E-22 1.1E-26 179.6 19.8 215 6-238 24-244 (368)
32 cd06810 PLPDE_III_ODC_DapDC_li 99.9 1.6E-20 3.4E-25 171.3 19.7 183 6-212 7-209 (368)
33 cd06839 PLPDE_III_Btrk_like Ty 99.9 1.1E-20 2.3E-25 173.3 17.7 211 6-237 13-243 (382)
34 cd06828 PLPDE_III_DapDC Type I 99.9 1.5E-19 3.2E-24 165.2 22.2 187 6-213 9-215 (373)
35 cd00622 PLPDE_III_ODC Type III 99.8 4.4E-20 9.6E-25 168.2 16.6 206 6-238 8-231 (362)
36 cd06842 PLPDE_III_Y4yA_like Ty 99.8 6.6E-19 1.4E-23 163.9 23.0 190 6-214 16-214 (423)
37 cd06843 PLPDE_III_PvsE_like Ty 99.8 9.1E-19 2E-23 160.6 21.3 185 6-211 8-211 (377)
38 TIGR03099 dCO2ase_PEP1 pyridox 99.8 5.5E-19 1.2E-23 163.1 18.1 206 6-234 31-256 (398)
39 PLN02537 diaminopimelate decar 99.8 2.6E-18 5.6E-23 159.3 21.7 186 6-211 24-228 (410)
40 TIGR01048 lysA diaminopimelate 99.8 3.2E-18 6.9E-23 158.8 21.4 187 6-213 31-237 (417)
41 cd06841 PLPDE_III_MccE_like Ty 99.8 2E-17 4.3E-22 151.8 22.3 186 6-211 13-210 (379)
42 PRK11165 diaminopimelate decar 99.5 7.8E-12 1.7E-16 116.5 19.3 177 6-214 32-228 (420)
43 COG0019 LysA Diaminopimelate d 99.3 3.6E-10 7.8E-15 104.3 19.7 185 6-212 33-237 (394)
44 cd06830 PLPDE_III_ADC Type III 99.3 1.6E-09 3.5E-14 100.7 24.1 199 6-211 11-231 (409)
45 PF02784 Orn_Arg_deC_N: Pyrido 99.2 6.6E-10 1.4E-14 96.5 15.2 183 6-211 1-203 (251)
46 cd06836 PLPDE_III_ODC_DapDC_li 99.2 4.7E-09 1E-13 96.6 21.1 184 6-211 9-214 (379)
47 cd06831 PLPDE_III_ODC_like_AZI 99.1 1.1E-08 2.4E-13 94.7 18.4 178 6-211 19-210 (394)
48 TIGR01273 speA arginine decarb 99.0 1.6E-07 3.5E-12 91.3 23.8 200 6-211 63-283 (624)
49 TIGR01047 nspC carboxynorsperm 99.0 1.4E-07 3E-12 87.0 20.4 177 6-211 9-199 (380)
50 PRK05354 arginine decarboxylas 98.9 3.4E-07 7.5E-12 89.1 23.3 200 6-211 70-290 (634)
51 cd06840 PLPDE_III_Bif_AspK_Dap 98.9 3E-07 6.5E-12 84.4 20.9 146 6-176 18-181 (368)
52 PRK08961 bifunctional aspartat 98.8 2.5E-07 5.4E-12 93.5 19.1 177 6-211 509-703 (861)
53 PLN02439 arginine decarboxylas 98.8 3.4E-06 7.5E-11 81.2 23.7 197 7-210 6-226 (559)
54 cd06829 PLPDE_III_CANSDC Type 98.7 3.7E-06 7.9E-11 76.5 19.3 144 6-176 7-164 (346)
55 KOG0622 Ornithine decarboxylas 98.1 0.0001 2.2E-09 67.6 14.9 172 6-202 62-246 (448)
56 COG0386 BtuE Glutathione perox 78.4 10 0.00023 30.6 6.8 57 129-190 25-84 (162)
57 COG3589 Uncharacterized conser 75.1 4.3 9.3E-05 36.9 4.1 93 141-235 1-103 (360)
58 PF00834 Ribul_P_3_epim: Ribul 72.4 32 0.00069 28.9 8.7 170 47-236 16-200 (201)
59 TIGR03693 ocin_ThiF_like putat 71.6 54 0.0012 32.5 10.9 118 5-126 101-232 (637)
60 COG0036 Rpe Pentose-5-phosphat 68.3 77 0.0017 27.2 14.7 73 164-239 131-206 (220)
61 COG1166 SpeA Arginine decarbox 64.1 1.5E+02 0.0033 29.1 18.0 194 8-211 88-306 (652)
62 PRK08091 ribulose-phosphate 3- 63.5 97 0.0021 26.6 15.9 170 47-237 29-214 (228)
63 TIGR00612 ispG_gcpE 1-hydroxy- 56.9 77 0.0017 29.0 8.4 124 47-176 38-175 (346)
64 cd06533 Glyco_transf_WecG_TagA 55.5 96 0.0021 25.1 8.3 55 103-170 24-78 (171)
65 COG0269 SgbH 3-hexulose-6-phos 55.4 59 0.0013 27.8 7.1 62 33-94 55-124 (217)
66 COG3412 Uncharacterized protei 54.5 54 0.0012 25.6 6.1 59 102-164 3-61 (129)
67 COG0821 gcpE 1-hydroxy-2-methy 53.8 1.1E+02 0.0023 28.1 8.7 99 36-139 25-134 (361)
68 PRK00366 ispG 4-hydroxy-3-meth 53.0 74 0.0016 29.3 7.7 90 47-139 46-141 (360)
69 PRK02048 4-hydroxy-3-methylbut 52.0 1.3E+02 0.0029 29.7 9.7 146 47-202 45-229 (611)
70 cd07948 DRE_TIM_HCS Saccharomy 51.0 1.7E+02 0.0036 25.5 15.9 39 115-162 115-153 (262)
71 cd02429 PTH2_like Peptidyl-tRN 48.0 75 0.0016 24.4 6.0 46 101-148 55-100 (116)
72 TIGR00696 wecB_tagA_cpsF bacte 48.0 95 0.0021 25.5 7.1 54 104-170 27-80 (177)
73 TIGR02356 adenyl_thiF thiazole 47.5 1.6E+02 0.0035 24.3 9.3 80 44-126 32-137 (202)
74 PF11823 DUF3343: Protein of u 45.2 98 0.0021 21.2 6.4 62 103-172 3-71 (73)
75 cd07943 DRE_TIM_HOA 4-hydroxy- 44.8 2.1E+02 0.0045 24.7 15.5 69 85-162 84-153 (263)
76 PF04551 GcpE: GcpE protein; 43.9 73 0.0016 29.3 6.2 103 34-139 16-142 (359)
77 PRK00694 4-hydroxy-3-methylbut 43.8 2E+02 0.0044 28.3 9.5 125 47-177 49-212 (606)
78 PRK07534 methionine synthase I 43.6 1E+02 0.0022 28.0 7.3 64 104-173 149-214 (336)
79 COG2040 MHT1 Homocysteine/sele 42.8 80 0.0017 28.3 6.1 65 105-175 153-218 (300)
80 PRK09485 mmuM homocysteine met 41.5 1.4E+02 0.003 26.6 7.7 61 104-170 158-220 (304)
81 cd01573 modD_like ModD; Quinol 41.5 81 0.0017 27.8 6.1 67 43-112 190-261 (272)
82 PRK05690 molybdopterin biosynt 40.9 2.3E+02 0.0051 24.3 9.0 80 44-126 43-148 (245)
83 PHA01627 DNA binding protein 39.5 1.5E+02 0.0033 22.4 6.4 54 81-138 20-73 (107)
84 PLN02489 homocysteine S-methyl 39.1 1.7E+02 0.0036 26.6 7.9 62 104-170 185-247 (335)
85 COG3454 Metal-dependent hydrol 39.1 69 0.0015 29.3 5.2 27 149-176 142-168 (377)
86 PF07476 MAAL_C: Methylasparta 38.7 2E+02 0.0043 24.9 7.7 111 111-230 50-168 (248)
87 TIGR02355 moeB molybdopterin s 38.4 1.7E+02 0.0037 25.1 7.5 81 44-128 35-141 (240)
88 PLN02925 4-hydroxy-3-methylbut 37.6 4.5E+02 0.0098 26.6 11.6 148 47-202 114-298 (733)
89 PF02581 TMP-TENI: Thiamine mo 37.4 1.6E+02 0.0035 23.8 7.0 58 37-97 97-168 (180)
90 TIGR03217 4OH_2_O_val_ald 4-hy 36.2 3.3E+02 0.0072 24.7 15.2 69 85-162 86-155 (333)
91 COG4080 SpoU rRNA Methylase fa 33.9 1.1E+02 0.0023 24.4 4.9 67 12-85 8-81 (147)
92 TIGR00190 thiC thiamine biosyn 33.7 2.4E+02 0.0052 26.5 7.9 129 50-211 84-222 (423)
93 PRK07428 nicotinate-nucleotide 32.6 3.6E+02 0.0078 24.0 8.9 58 40-97 200-262 (288)
94 PRK08005 epimerase; Validated 32.1 3.1E+02 0.0068 23.2 12.4 166 47-237 17-198 (210)
95 PRK06512 thiamine-phosphate py 32.0 2.4E+02 0.0052 23.9 7.4 59 36-96 111-182 (221)
96 PRK00278 trpC indole-3-glycero 31.7 3.4E+02 0.0075 23.5 11.8 173 33-236 48-246 (260)
97 TIGR00343 pyridoxal 5'-phospha 31.3 84 0.0018 28.0 4.5 38 12-62 57-95 (287)
98 PRK08072 nicotinate-nucleotide 30.9 3.8E+02 0.0082 23.7 10.3 66 43-111 195-262 (277)
99 PRK06806 fructose-bisphosphate 29.6 3.2E+02 0.007 24.1 8.0 19 44-62 153-172 (281)
100 PRK00278 trpC indole-3-glycero 29.5 3.7E+02 0.0079 23.3 8.3 28 37-64 161-188 (260)
101 cd04727 pdxS PdxS is a subunit 29.5 90 0.0019 27.8 4.4 37 12-61 55-92 (283)
102 COG0134 TrpC Indole-3-glycerol 28.8 2.9E+02 0.0063 24.2 7.4 99 33-138 44-166 (254)
103 cd07939 DRE_TIM_NifV Streptomy 28.7 3.8E+02 0.0082 23.0 15.1 104 49-162 26-151 (259)
104 COG2100 Predicted Fe-S oxidore 28.7 2.6E+02 0.0056 25.8 7.1 62 107-176 140-201 (414)
105 PRK14057 epimerase; Provisiona 28.6 4E+02 0.0087 23.3 14.6 71 164-236 154-227 (254)
106 TIGR01859 fruc_bis_ald_ fructo 28.2 1.5E+02 0.0032 26.3 5.6 20 44-63 153-173 (282)
107 PRK12475 thiamine/molybdopteri 27.6 4.6E+02 0.01 23.7 8.8 81 44-128 35-143 (338)
108 PRK13352 thiamine biosynthesis 27.5 3.3E+02 0.0071 25.8 7.8 131 50-211 84-225 (431)
109 PRK07998 gatY putative fructos 27.2 4.5E+02 0.0097 23.4 9.1 49 10-64 110-174 (283)
110 COG3010 NanE Putative N-acetyl 26.9 1.2E+02 0.0026 25.9 4.5 39 12-62 56-104 (229)
111 PRK11377 dihydroxyacetone kina 26.7 2.9E+02 0.0062 26.5 7.6 60 103-164 3-64 (473)
112 COG4090 Uncharacterized protei 26.5 79 0.0017 25.0 3.1 35 137-175 93-129 (154)
113 cd02933 OYE_like_FMN Old yello 25.9 5E+02 0.011 23.5 8.8 88 8-97 196-304 (338)
114 cd01572 QPRTase Quinolinate ph 25.7 3.5E+02 0.0075 23.7 7.5 15 82-96 230-244 (268)
115 cd00331 IGPS Indole-3-glycerol 25.6 3.8E+02 0.0083 22.1 11.4 172 34-237 10-208 (217)
116 PF03808 Glyco_tran_WecB: Glyc 25.2 2.3E+02 0.005 22.8 5.9 55 104-171 27-81 (172)
117 cd01568 QPRTase_NadC Quinolina 25.1 4.6E+02 0.01 22.9 9.5 66 42-111 187-257 (269)
118 COG2159 Predicted metal-depend 25.1 3.5E+02 0.0075 24.0 7.4 60 110-177 142-203 (293)
119 COG4992 ArgD Ornithine/acetylo 24.8 86 0.0019 29.4 3.5 35 108-146 201-235 (404)
120 PRK08745 ribulose-phosphate 3- 24.7 4.4E+02 0.0095 22.4 14.5 72 164-237 132-206 (223)
121 PRK09140 2-dehydro-3-deoxy-6-p 23.8 4.3E+02 0.0094 22.0 8.5 20 52-71 100-120 (206)
122 PF00682 HMGL-like: HMGL-like 23.2 4.4E+02 0.0096 22.0 12.0 171 49-236 20-219 (237)
123 PRK07315 fructose-bisphosphate 23.2 2.1E+02 0.0046 25.4 5.7 20 44-63 154-173 (293)
124 COG1157 FliI Flagellar biosynt 22.3 3.4E+02 0.0075 25.7 6.9 61 114-178 241-319 (441)
125 PF03460 NIR_SIR_ferr: Nitrite 21.9 1.7E+02 0.0037 19.4 3.9 46 110-159 22-67 (69)
126 PF00255 GSHPx: Glutathione pe 21.8 2.2E+02 0.0048 21.4 4.8 54 130-188 22-78 (108)
127 PRK10605 N-ethylmaleimide redu 21.8 6.2E+02 0.013 23.1 9.0 57 8-64 203-270 (362)
128 PRK07877 hypothetical protein; 21.1 8.9E+02 0.019 24.6 10.4 89 33-126 108-222 (722)
129 PRK09722 allulose-6-phosphate 21.0 5.3E+02 0.012 22.1 14.6 70 165-236 131-204 (229)
130 PRK05581 ribulose-phosphate 3- 20.5 4.8E+02 0.01 21.3 18.2 169 47-237 20-205 (220)
131 cd06831 PLPDE_III_ODC_like_AZI 20.3 6.9E+02 0.015 23.1 11.7 44 29-74 77-120 (394)
No 1
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=1.2e-47 Score=321.93 Aligned_cols=223 Identities=46% Similarity=0.662 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCCC--Cceeeeecc
Q 025987 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE--DIKWHFVGH 86 (245)
Q Consensus 9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~~--~i~~~~lG~ 86 (245)
.+.+|+..|+++|.++++.++|++..|+|+||+|++.++.++.++++|++.||+|++||+..+.+++.. +|.||+||+
T Consensus 2 ~i~~nl~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~ 81 (228)
T COG0325 2 DIKENLAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGP 81 (228)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHHHHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEech
Confidence 378999999999999999999999999999999999999999999999999999999999999999665 499999999
Q ss_pred CChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCee
Q 025987 87 LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (245)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~ 166 (245)
+|+||++.+++ ++++++|||++..|++|++.|...++ +++|+|+||+++|.+|.|+.|+++..++..+. .+|+|+
T Consensus 82 LQsNK~k~v~~---~~~~ihSlDr~klA~~l~kra~~~~~-~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~ 156 (228)
T COG0325 82 LQSNKVKLVAE---NFDWIHSLDRLKLAKELNKRALELPK-PLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLE 156 (228)
T ss_pred hhhhHHHHHHh---hcceeeecCHHHHHHHHHHHHHhCCC-CceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCe
Confidence 99999999994 69999999999999999999988887 89999999999999999999999999999999 999999
Q ss_pred EeEeeeeCCCCCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCCCcc
Q 025987 167 FSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 239 (245)
Q Consensus 167 l~Gl~TH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~~p~ 239 (245)
++||||+.+.+++ ....+|+.+.++++.+.++ ++ ++..+|||||+||+.++..|.|+||+|++|||.++|
T Consensus 157 l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~-~~--~~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~ 228 (228)
T COG0325 157 LRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAK-YP--PIDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY 228 (228)
T ss_pred EeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHh-cC--CCCeecCcCcccHHHHHHcCCCEEEEcHHhhCCCCC
Confidence 9999999997433 4557888888888988875 44 468899999999999999999999999999999886
No 2
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=100.00 E-value=1.8e-45 Score=315.02 Aligned_cols=216 Identities=43% Similarity=0.636 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHH----hhcCCCCCceeeeec
Q 025987 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD----KAPQLPEDIKWHFVG 85 (245)
Q Consensus 10 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~----lr~~~~~~i~~~~lG 85 (245)
+.+|++.|+++|.++++..++++++++++||||+||++.+..++++|+++|||++++||++ ||+.. .+.|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~~~G~~~fgva~~~Ea~~k~~~Lr~~g--~~~~~~lg 79 (224)
T cd06824 2 IAENLAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAYAAGQRHFGENYVQEALEKIEALRDLQ--DIEWHFIG 79 (224)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCcccCcChHHHHHHHHHHhccCC--CeeEEEEc
Confidence 5689999999999999999998888999999999999887544689999999999999997 77652 46789999
Q ss_pred cCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCe
Q 025987 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNL 165 (245)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l 165 (245)
++++++....+ ..++++++|+|.++++.|++.+.+.++ +++|||+||||+||+|+||+|+++.++++.+. .+|+|
T Consensus 80 ~~~~~~~~~~~---~~~~~~~~I~s~~~~~~l~~~a~~~g~-~~~v~l~id~~~Gm~R~Gi~~~~~~~~~~~i~-~~~~l 154 (224)
T cd06824 80 PIQSNKTKLIA---ENFDWVHSVDRLKIAKRLNDQRPAGLP-PLNVCIQVNISGEDSKSGVAPEDAAELAEAIS-QLPNL 154 (224)
T ss_pred CchhhhHHHHH---hhCCEEEecCCHHHHHHHHHHHHhcCC-CCcEEEEEEcCCCCCCCCCCHHHHHHHHHHHh-cCCCC
Confidence 99997744444 148999999999999999999988888 99999999998889999999988999999999 89999
Q ss_pred eEeEeeeeCCCCCCCcHHHHHHHHHH---HHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCC
Q 025987 166 EFSGLMTIGMPDYTSTPENFRTLLNC---RAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 166 ~l~Gl~TH~a~~~~~~~~~~~~~~~~---~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~ 236 (245)
+++||||||++.++ ...|.+.|.++ .+.+++. |+.+ ..+|+|||+++..+++.++|+||||+++||.
T Consensus 155 ~l~Gl~tH~a~~~~-~~~q~~~f~~~~~~~~~l~~~-~~~~--~~is~gnS~~~~~~~~~~~~~vRpG~~lyG~ 224 (224)
T cd06824 155 RLRGLMAIPAPTDD-EAAQRAAFKRLRQLFDQLKKQ-YPDL--DTLSMGMSGDLEAAIAAGSTMVRIGTAIFGA 224 (224)
T ss_pred cEEEEEEeCCCCCC-hHHHHHHHHHHHHHHHHHHhh-CCCC--CEEeCcCcHhHHHHHHcCCCEEEcChHhcCC
Confidence 99999999997443 34455555555 5666653 6653 5789999999998888899999999999995
No 3
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=100.00 E-value=3e-45 Score=313.18 Aligned_cols=221 Identities=58% Similarity=0.968 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCCCCceeeeeccCCh
Q 025987 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQS 89 (245)
Q Consensus 10 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~lG~~~~ 89 (245)
+.+|++.|+++|.++++. |.+.+++|+||+|+|+.+.++.++++|++.||+|++||+..+.+.++.+|.|||||++|+
T Consensus 1 ~~~~l~~i~~~i~~a~~~--r~~~~v~LvaVsK~~~~~~i~~~~~~G~~~fGENrvQe~~~K~~~l~~~i~wHfIG~LQ~ 78 (227)
T cd06822 1 LIANLKRIRQAVKRASKK--LPASKPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEKAPDLPIDIKWHFIGHLQS 78 (227)
T ss_pred ChHHHHHHHHHHHHHHHh--CCCCCcEEEEEECCCCHHHHHHHHHcCCccccCcHHHHHHHHHHhccCCceEEEECCCch
Confidence 468999999999998887 556889999999999999999999999999999999999998877766799999999999
Q ss_pred HHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhc--CCCCceEEEEEeCCCCCCcccCChhhHHHHHHHH-HhcCCCee
Q 025987 90 NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV-RLRCPNLE 166 (245)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~--~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i-~~~~~~l~ 166 (245)
||++.+++. +.++++++|||++.|+.|++.+.+. ++ +++|+|+||+|++.+|.|+.|+++.++++.+ . ++|+|+
T Consensus 79 NK~k~i~~~-~~~~~ihsvDs~~la~~L~~~a~~~~~~~-~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~-~~~~L~ 155 (227)
T cd06822 79 NKVKKLLKV-PNLYMVETVDSEKLADKLNKAWEKLGERE-PLKVMVQVNTSGEESKSGLEPSEAVELVKHIIE-ECPNLK 155 (227)
T ss_pred hhHHHHhcc-ccccEEEecCCHHHHHHHHHHHHHhcCCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHh-hCCCce
Confidence 999999620 2589999999999999999999988 88 9999999999977799999999999999999 5 799999
Q ss_pred EeEeeeeCCCCCC---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 167 FSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 167 l~Gl~TH~a~~~~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
+.|||||.+.+++ ..++.|+.+.++++.|++.+|+...+..+|||||+||+.+++.|+|+||||+++||
T Consensus 156 l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS~D~~~Ai~~GsT~VRiGt~IFg 227 (227)
T cd06822 156 FSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred EEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecccHhHHHHHHcCCCEEeCCchhcC
Confidence 9999999997433 23568889999999988743554234789999999999999999999999999998
No 4
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=100.00 E-value=4.2e-45 Score=313.77 Aligned_cols=222 Identities=41% Similarity=0.647 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHH----hhcCCCCCceeee
Q 025987 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVD----KAPQLPEDIKWHF 83 (245)
Q Consensus 8 ~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~----lr~~~~~~i~~~~ 83 (245)
+.+.+|++.|+++|..+++.++|++++++++||+|+...+.++.++++|+++||||+++||++ +|+.. .+.||+
T Consensus 2 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~l~aV~K~~~~~~i~~l~~~G~~~fg~~~~~Ea~~k~~~lr~~~--~~~~~~ 79 (229)
T TIGR00044 2 SDIIHYLEDIKTKIEAANTHVNRNPSKVKLLAVSKTKPASAIQIAYDAGQRAFGENYVQELVEKIKLLEDLG--KLEWHF 79 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCccccEEcHHHHHHHHHHhcccC--CceEEE
Confidence 457899999999999999999999899999999999998888668899999999999999998 54332 467899
Q ss_pred eccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCC
Q 025987 84 VGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 163 (245)
Q Consensus 84 lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~ 163 (245)
+|++|+++....+ ..++++++|||.++++.|++.+.+.++ +++|||+||||+||+|+||.|+++.++++.+. ++|
T Consensus 80 ig~~q~~~~~~~~---~~~~l~~~vds~~~~~~l~~~a~~~~~-~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~-~~~ 154 (229)
T TIGR00044 80 IGPLQSNKDRLVV---ENFDWVHTIDSLKIAKKLNEQREKLQP-PLNVLLQINISDEESKSGIQPEELLELAIQIE-ELK 154 (229)
T ss_pred ECCCcchHHHHHh---hhcCEEEEECCHHHHHHHHHHHHhcCC-CceEEEEEECCCCCCCCCCCHHHHHHHHHHHh-cCC
Confidence 9999998988776 358999999999999999999998898 99999999998779999999988999999999 899
Q ss_pred CeeEeEeeeeCCCCCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCCC
Q 025987 164 NLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 164 ~l~l~Gl~TH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~~ 237 (245)
+|++.|+||||++.++ ...+.|+.+.++++.++.. ++..++..+|+|||++|+.+.+.++|+||||+++||++
T Consensus 155 ~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~lS~G~t~~~~~a~~~g~tevR~G~~if~dr 229 (229)
T TIGR00044 155 HLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQIKQD-SPFGTIDTLSMGMSDDFEEAIAAGATMVRIGTAIFGAR 229 (229)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCCCCEEeeeCcHhHHHHHHCCCCEEECChHHcCCC
Confidence 9999999999998433 2335677788888888774 54223578899999999988889999999999999975
No 5
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=100.00 E-value=2.3e-42 Score=295.33 Aligned_cols=219 Identities=48% Similarity=0.725 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCCC-CceeeeeccCC
Q 025987 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE-DIKWHFVGHLQ 88 (245)
Q Consensus 10 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~~-~i~~~~lG~~~ 88 (245)
+.+|++++++|++.+++.+++.+++++++||||+||++.+..++++|+++||||+++||+.+|+.+.. .+.|+++|.++
T Consensus 1 ~~~~~~~l~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~llg~~~ 80 (222)
T cd00635 1 IAENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKAEELPDPDIEWHFIGHLQ 80 (222)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCcccCCCcHHHHHHHHHHccCCCceEEEECccc
Confidence 35788889999988888886555789999999999998875557899999999999999999998544 45677889989
Q ss_pred hHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEe
Q 025987 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFS 168 (245)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~ 168 (245)
+++++.+++ .++++++|+|.++++.|++.+.+.++ +++|||+||||..|+|+||.++++.++++.+. ++|+|++.
T Consensus 81 ~~~~~~~~~---~~~~~~~v~s~~~l~~l~~~a~~~~~-~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~-~~~~l~~~ 155 (222)
T cd00635 81 TNKVKYAVR---LFDLIHSVDSLKLAEELNKRAEKEGR-VLDVLVQVNIGGEESKSGVAPEELEELLEEIA-ALPNLRIR 155 (222)
T ss_pred cccHHHHHh---hCCEEEEcCCHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHHH-cCCCCcEE
Confidence 999999983 36899999999999999999988888 99999999999445999999999999999999 89999999
Q ss_pred EeeeeCCCCC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 169 GLMTIGMPDY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 169 Gl~TH~a~~~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
|+|||+++.+ +...+.++.+.++.+.+++..|+. +..+|.|||++|+.+...++|++|||+++||
T Consensus 156 Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~is~G~t~~~~~~~~~~~~~~r~G~~if~ 222 (222)
T cd00635 156 GLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVN--LKELSMGMSGDFEIAIEEGATLVRIGTAIFG 222 (222)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCC--CCEEECcccHhHHHHHHcCCCEEEeChhhcC
Confidence 9999999743 244567888888888888753465 4789999999999888889999999999998
No 6
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=100.00 E-value=1.1e-41 Score=289.29 Aligned_cols=209 Identities=24% Similarity=0.328 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHHHHHHHcCCCeeecccHHHHHHhhcCCCCCcee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKW 81 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~ 81 (245)
|.++|++|++.+++.++ +..+++||+|+ ||...+......|+++|||++++||+.+|+.+ .+|
T Consensus 2 dl~al~~Ni~~~~~~~~----------~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g-~~i-- 68 (218)
T PF01168_consen 2 DLDALRHNIRKIRQRAG----------PGTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAG-API-- 68 (218)
T ss_dssp EHHHHHHHHHHHHHHHC----------TTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTT-SEE--
T ss_pred CHHHHHHHHHHHHHHcC----------CCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcC-Cce--
Confidence 45788888888888772 46789999999 55544433233369999999999999999998 666
Q ss_pred eeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhc
Q 025987 82 HFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLR 161 (245)
Q Consensus 82 ~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~ 161 (245)
+++++++++++..+++ ++++++|+|.++++.|++.+.+.++ +++|||+|||| |+|.||.++++.++++.+. +
T Consensus 69 l~l~~~~~~~~~~~~~----~~~~~~v~s~~~~~~l~~~~~~~~~-~~~v~l~vdtG--~~R~G~~~~~~~~l~~~i~-~ 140 (218)
T PF01168_consen 69 LVLGPIPPEELEELVE----YNIIPTVDSLEQLEALSKAAKKQGK-PLKVHLKVDTG--MGRLGVRPEELEELAEAIK-A 140 (218)
T ss_dssp EEESESTGGGHHHHHH----TTEEEEE-SHHHHHHHHHHHHHHTS-TEEEEEEBESS--SSSSSBECHHHHHHHHHHH-H
T ss_pred EEEcCCChhhHHHHhh----CcEEEEEchhhHHHHHHHHHHHcCC-ceEEEEeeccc--ccccCCCHHHHHHHHHHHh-c
Confidence 7888899999999994 5999999999999999999999998 99999999999 9999999999999999999 8
Q ss_pred CCCeeEeEeeeeCCCCCC--CcHH-HHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHH-HcCCCeeeeCccccCCC
Q 025987 162 CPNLEFSGLMTIGMPDYT--STPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 162 ~~~l~l~Gl~TH~a~~~~--~~~~-~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~-~~~~d~VR~G~~lyG~~ 237 (245)
+|+|++.||||||++.++ +... |+++|.++.+.++++ |+.+ ..+|+|+|+++..++ ..++|+||||++|||++
T Consensus 141 ~~~l~l~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~-~~~~--~~~s~g~S~~~~~~~~~~~~~~vR~G~~lyG~~ 217 (218)
T PF01168_consen 141 LPNLRLEGLMTHFAHADDPDYTNQEQFERFRELAEALEKA-GIPP--PIVSMGNSAAFLLAPAHEGITMVRPGIALYGYR 217 (218)
T ss_dssp TTTEEEEEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHT-TTTC--SEEEEEBHHHHHHHGGTTTTSEEEESGGGGT-H
T ss_pred CCCceEeeEeccccccCCHHHHHHHHHHHHHHHHHHHHhc-cCCC--ceecCCCCcchhhcccccCCcEEEechhhhCCC
Confidence 999999999999998443 2334 999999999999874 7554 688999999998777 66799999999999998
Q ss_pred c
Q 025987 238 E 238 (245)
Q Consensus 238 p 238 (245)
|
T Consensus 218 P 218 (218)
T PF01168_consen 218 P 218 (218)
T ss_dssp S
T ss_pred C
Confidence 7
No 7
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=271.03 Aligned_cols=237 Identities=60% Similarity=0.918 Sum_probs=203.0
Q ss_pred CCCcchHH-HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCCCCc
Q 025987 1 MAAPTVEG-AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDI 79 (245)
Q Consensus 1 ~~~~~~~~-~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i 79 (245)
|+++.+.+ +|+. +.+++.++....+|....++|+||+|++.+..+..++++|.++||++++||.+++...+..+|
T Consensus 1 Ms~~~~~~~~L~~----v~~rv~qa~~~~~r~~~~~rlvaVSKtKPa~~i~~~Y~~GqR~FGENYVQEl~eKap~lp~DI 76 (244)
T KOG3157|consen 1 MSAEIVYASALRA----VIERVQQAVNQRPRDENAVRLVAVSKTKPASLIIEAYDAGQRHFGENYVQELIEKAPLLPDDI 76 (244)
T ss_pred CchHHHHHHHHHH----HHHHHHHHHHhccccccceEEEEeecCCcHHHHHHHHHcCcChhhHHHHHHHHHhcccCcccc
Confidence 56666654 4544 444455555555666778899999999999999999999999999999999999887788889
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCC-CCceEEEEEeCCCCCCcccCChhhHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR-KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 158 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~-~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i 158 (245)
.|||||.+|.++++.++. ..+.-.+.|||+.+.|..+++...+.|. .|++|+|+|||.+|.++.|+.|.++.++++.+
T Consensus 77 ~WHFIG~lQsnK~kkl~s-vpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSGEd~K~Giepse~~~l~~~i 155 (244)
T KOG3157|consen 77 KWHFIGHLQSNKCKKLLS-VPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSGEDSKSGIEPSEAPELAEHI 155 (244)
T ss_pred eeeeechhhhcccchhcc-CCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEeecCCccccCCCChhhhHHHHHHH
Confidence 999999999999999974 3556688999999999999999887764 38999999999999999999999999999999
Q ss_pred HhcCCCeeEeEeeeeCCCCCC---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 159 RLRCPNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
+..|+||+|.||||+.+.+.+ ....-|+.|.++.+.+++++|+++....+|||||.||..+++.|.|.||+|+.|||
T Consensus 156 ~~~c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~r~~ic~~lg~~~dq~eLSMGMS~DF~~AIe~Gst~VRvGStIFG 235 (244)
T KOG3157|consen 156 KSECKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKLRESICKKLGIPADQVELSMGMSADFLLAIEQGSTNVRVGSTIFG 235 (244)
T ss_pred HHhCCcceeeeeEEeccccccccCCCCccHHHHHHHHHHHHHHhCCChHHhhhhcccchhHHHHHHhCCceEEecccccc
Confidence 834999999999999997533 22345888999999998878987656788999999999999999999999999999
Q ss_pred CCccCcc
Q 025987 236 PREYAKK 242 (245)
Q Consensus 236 ~~p~~~~ 242 (245)
.+||.++
T Consensus 236 ~R~y~kk 242 (244)
T KOG3157|consen 236 AREYKKK 242 (244)
T ss_pred CCCCCCC
Confidence 9999876
No 8
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=100.00 E-value=5.4e-40 Score=298.60 Aligned_cols=214 Identities=16% Similarity=0.217 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc-cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT-KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa-Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~ 82 (245)
|.++|++|++.+++.+. +++++++||+|+ ||+..+ +.++++|+++|||++++||+.+|+. +..++ +
T Consensus 7 dl~al~~Ni~~i~~~~~---------~~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~~~i--l 75 (353)
T cd06815 7 NLSKIRHNAKVLVELCK---------SRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPK--M 75 (353)
T ss_pred eHHHHHHHHHHHHHHHh---------hcCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCCCCE--E
Confidence 45889999999988773 157899999999 698665 7788999999999999999999998 54465 7
Q ss_pred eeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcC
Q 025987 83 FVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (245)
Q Consensus 83 ~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~ 162 (245)
++|..++++++.+++ ++++.+++|.++++.|++++.+.++ +++|||||||| |+|+||.++++.++++.+. ++
T Consensus 76 llg~~~~~~~~~~~~----~~~~~~i~s~~~~~~l~~~a~~~~~-~~~vhlkvDtG--m~R~G~~~~e~~~~~~~i~-~~ 147 (353)
T cd06815 76 LLRIPMLSEVEDVVK----YADISLNSELETIKALSEEAKKQGK-IHKIILMVDLG--DLREGVLPEDLLDFVEEIL-KL 147 (353)
T ss_pred EECCCCHHHHHHHHh----hcceeccChHHHHHHHHHHHHHcCC-ccceEEEEecC--CCccccCHHHHHHHHHHHh-CC
Confidence 889989999999983 6778889999999999999988888 99999999999 9999999988999999999 89
Q ss_pred CCeeEeEeeeeCCCCCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHH----cCCCeeeeCccc-cC
Q 025987 163 PNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE----MGSTSVRIGSTI-FG 235 (245)
Q Consensus 163 ~~l~l~Gl~TH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~----~~~d~VR~G~~l-yG 235 (245)
++|+++||||||++.++ .+..++++|.++.+.+++..|+.+ ..+|+|||+++....+ .++|+||||++| ||
T Consensus 148 ~~l~~~Gi~tH~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~~~~~~S~~~~~~~~~~~~~~~~~vRpG~~l~yG 225 (353)
T cd06815 148 PGIELVGIGTNLGCYGGVLPTEENMGKLVELKEEIEKEFGIKL--PIISGGNSASLPLLLKGELPGGINQLRIGEAILLG 225 (353)
T ss_pred CCcEEEecccCccccCCCCCCHHHHHHHHHHHHHHHHhhCCCC--CEEeccchHHHHHHHhcCCcCCCceeEeehhhhcc
Confidence 99999999999997332 344567777777677765225543 5789999988775532 278999999998 69
Q ss_pred CCccC
Q 025987 236 PREYA 240 (245)
Q Consensus 236 ~~p~~ 240 (245)
..|+.
T Consensus 226 ~~p~~ 230 (353)
T cd06815 226 RETTY 230 (353)
T ss_pred ccccC
Confidence 98853
No 9
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.3e-40 Score=298.22 Aligned_cols=205 Identities=17% Similarity=0.229 Sum_probs=167.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCC-C
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-D 78 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-~ 78 (245)
|-++|+||++.++++. .+++++||||| ||++.+ ++++++||++||||+++||++||+. +.. |
T Consensus 10 dl~Al~~N~~~i~~~~-----------~~~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~ 78 (360)
T COG0787 10 DLGALRHNLRALRELA-----------GPAKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAP 78 (360)
T ss_pred eHHHHHHHHHHHHHhC-----------CCcEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCCC
Confidence 5589999999999987 23899999999 999776 7889999999999999999999999 663 8
Q ss_pred ceeeeec-cCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHH
Q 025987 79 IKWHFVG-HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEH 157 (245)
Q Consensus 79 i~~~~lG-~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~ 157 (245)
| ++++ .+++++...++ .++++++|.|.+|++.+.+.+.+. . +++|||||||| |||+||.|++...++..
T Consensus 79 I--lvL~g~~~~~~~~~~~----~~~l~~~v~s~~ql~~l~~~~~~~-~-~l~vhLkiDTG--M~RlG~~~~e~~~~~~~ 148 (360)
T COG0787 79 I--LVLEGFFPAEELELAA----AYNLTPVVNSLEQLEALKNAALKN-K-PLKVHLKIDTG--MNRLGLRPEEAVALAID 148 (360)
T ss_pred E--EEEcCcCChhhHHHHH----HcCCeEEECCHHHHHHHHHhhhhc-C-ceEEEEEECCC--CCcCCCChHHHHHHHHH
Confidence 8 6775 66666665566 389999999999999999888766 6 89999999999 99999999888888888
Q ss_pred HHhcCCCeeEeEeeeeCCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeee-ccCcccHHHHHHcCCCeeeeCcc
Q 025987 158 VRLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELS-MGMSGDFEQAIEMGSTSVRIGST 232 (245)
Q Consensus 158 i~~~~~~l~l~Gl~TH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S-~g~s~~~~~~~~~~~d~VR~G~~ 232 (245)
+. .++++.++|+||||+++|+ .+..|+++|. +.. .+++++..|++ +|.+.+++ ..++||||||++
T Consensus 149 ~~-~~~~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~-----~~~-~~~~~~~~h~aNSa~~~~~~---~~~~d~vRpGi~ 218 (360)
T COG0787 149 LI-ALKNLDLEGIFSHFACADEPEDPYTLKQLERFN-----LAK-QGLPGELSHLANSAGLLLGP---DYHFDMVRPGIA 218 (360)
T ss_pred Hh-hccCCceEEEEcccCCCCCCCChHHHHHHHHHH-----HHh-ccCCCceEEEeccHHHhcCc---ccccceeeccee
Confidence 87 7888889999999998443 4556777776 333 36766455553 33333333 679999999999
Q ss_pred ccCCCccCc
Q 025987 233 IFGPREYAK 241 (245)
Q Consensus 233 lyG~~p~~~ 241 (245)
+||.+|+..
T Consensus 219 lYG~~P~~~ 227 (360)
T COG0787 219 LYGLSPSGG 227 (360)
T ss_pred eecCCcccc
Confidence 999999864
No 10
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=100.00 E-value=2.5e-39 Score=295.68 Aligned_cols=207 Identities=17% Similarity=0.182 Sum_probs=173.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.|++.+ +++++++||||+ ||+..+ +.+.++|+++|||++++||+.||+. +..||
T Consensus 7 dl~al~~N~~~i~~~~----------~~~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~~I 76 (368)
T cd06825 7 DLSALEHNVKEIKRLL----------PSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGEI 76 (368)
T ss_pred EHHHHHHHHHHHHHhC----------CCCCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCCCE
Confidence 5689999999998887 346799999999 999776 7778899999999999999999998 66687
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~ 159 (245)
+++|+..++++..+++ ++++++|+|.++++.|++.+ + +++|||||||| |+|+||.|+++ +++..+.
T Consensus 77 --lvl~~~~~~~~~~~~~----~~l~~~i~~~~~l~~l~~~~----~-~~~vhlkvDtG--m~R~G~~~~~~-~~~~~~~ 142 (368)
T cd06825 77 --LILGYTPPVRAKELKK----YSLTQTLISEAYAEELSKYA----V-NIKVHLKVDTG--MHRLGESPEDI-DSILAIY 142 (368)
T ss_pred --EEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHhcC----C-CceEEEEeeCC--CCCCCCCHHHH-HHHHHHH
Confidence 6778878888999883 89999999999999998865 5 78999999999 99999999654 6677787
Q ss_pred hcCCCeeEeEeeeeCCCCCC-------CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcc
Q 025987 160 LRCPNLEFSGLMTIGMPDYT-------STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 232 (245)
Q Consensus 160 ~~~~~l~l~Gl~TH~a~~~~-------~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ 232 (245)
++|+|+++|+||||++.++ ++.+|+++|.++.+.+++. |+.+ ..+|+|+|......++.++|+||||++
T Consensus 143 -~~~~l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~-g~~~--~~~h~~nSa~~l~~~~~~~d~vR~G~~ 218 (368)
T cd06825 143 -RLKNLKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKAR-GIEV--GKIHIQSSYGILNYPDLKYDYVRPGIL 218 (368)
T ss_pred -hCCCCcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhc-CCCC--CcEEeeCCHHHhCCccccCCeEccCeE
Confidence 8999999999999997332 3567899999999998874 7765 356677775544334568999999999
Q ss_pred ccCCCccC
Q 025987 233 IFGPREYA 240 (245)
Q Consensus 233 lyG~~p~~ 240 (245)
+||..|+.
T Consensus 219 lYG~~p~~ 226 (368)
T cd06825 219 LYGVLSDP 226 (368)
T ss_pred EECCCCCC
Confidence 99998854
No 11
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=1.9e-38 Score=289.65 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.|++.+ ++++++++|||+ ||+..+ +.+.++|+++|+|++++||..+|++ +..+|
T Consensus 7 dl~al~~N~~~i~~~~----------~~~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~i 76 (365)
T cd06826 7 STGAFENNIKLLKKLL----------GGNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKI 76 (365)
T ss_pred EHHHHHHHHHHHHHhC----------CCCCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCCE
Confidence 5689999999999887 346799999999 999776 7788999999999999999999998 66676
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeC-CCCCCcccCChhh--HHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSS--CLGIVE 156 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidt-G~~m~R~G~~~~e--~~~~~~ 156 (245)
+++|...+++++.+++ ++++++|+|+++++.|++.+.+.++ +++|||+||| | |+|+||.+++ ..+++.
T Consensus 77 --lvl~~~~~~e~~~~i~----~~i~~~v~s~~~l~~l~~~a~~~~~-~~~v~LkvDt~G--m~R~Gi~~~~~~~~~~~~ 147 (365)
T cd06826 77 --LRVRTATPSEIEDALA----YNIEELIGSLDQAEQIDSLAKRHGK-TLPVHLALNSGG--MSRNGLELSTAQGKEDAV 147 (365)
T ss_pred --EEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC--CCCCCCCcchhhHHHHHH
Confidence 5678788899999993 7899999999999999999988888 9999999999 8 9999999843 567777
Q ss_pred HHHhcCCCeeEeEeeeeCCC-CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 157 HVRLRCPNLEFSGLMTIGMP-DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 157 ~i~~~~~~l~l~Gl~TH~a~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
.+. ++|+|+++||||||++ |+..+..|+++|.++.+.+.+..|+.++....|+++|......++.++|+||||+++||
T Consensus 148 ~~~-~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~~l~~~~~~~d~vR~G~~lyG 226 (365)
T cd06826 148 AIA-TLPNLKIVGIMTHFPVEDEDDVRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVPEAHLDMVRPGGILYG 226 (365)
T ss_pred HHH-HCCCCcEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHHHhcCccccCCcCccCeeeeC
Confidence 888 8999999999999998 43345679999999888773324665332344555555443233568999999999999
Q ss_pred CCcc
Q 025987 236 PREY 239 (245)
Q Consensus 236 ~~p~ 239 (245)
+.|+
T Consensus 227 ~~p~ 230 (365)
T cd06826 227 DTPP 230 (365)
T ss_pred CCCC
Confidence 9985
No 12
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=100.00 E-value=5.4e-38 Score=286.75 Aligned_cols=212 Identities=17% Similarity=0.216 Sum_probs=184.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.|++.+ +.++++++|+|+ ||...+ +.+.++|+++|+|++++||..+|+. ++.++
T Consensus 8 dl~~l~~N~~~i~~~~----------~~~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~i 77 (367)
T TIGR00492 8 DLAALKHNLSAIRNHI----------GPKSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITAPI 77 (367)
T ss_pred EHHHHHHHHHHHHHhc----------CCCCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCE
Confidence 5689999999998887 245789999999 998765 7788999999999999999999998 44566
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~ 159 (245)
+++|+++++++..+++ ++++++|+|+++++.|++.+.+.++ +++|||+|||| |+|+|+.++++.++++.+.
T Consensus 78 --lvl~~~~~~~~~~~~~----~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~l~VdtG--m~R~Gi~~~e~~~~~~~i~ 148 (367)
T TIGR00492 78 --LLLGGFFAEDLKILAA----WDLTTTVHSVEQLQALEEALLKEPK-RLKVHLKIDTG--MNRLGVKPDEAALFVQKLR 148 (367)
T ss_pred --EEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeeCC--CCCCCCChHHHHHHHHHHH
Confidence 7788888889998883 7899999999999999999988888 99999999999 9999999988888899898
Q ss_pred hcCCCee-EeEeeeeCCCCC--C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcccc
Q 025987 160 LRCPNLE-FSGLMTIGMPDY--T--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234 (245)
Q Consensus 160 ~~~~~l~-l~Gl~TH~a~~~--~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ly 234 (245)
++|+|+ +.||||||++.+ + ++.+|+++|.++.+.+++. |+++ ..+|+|+|+++...++.++|+||||+++|
T Consensus 149 -~~~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~-g~~~--~~~~~~nS~~~~~~~~~~~d~vR~G~~ly 224 (367)
T TIGR00492 149 -QLKKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQ-NIEP--PFRHIANSAAILNWPESHFDMVRPGIILY 224 (367)
T ss_pred -hCCCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhc-CCCC--CcEEccCCHHHhCCccccCCeEccCeEEE
Confidence 899999 999999999733 2 4567999999999998874 7654 56788888887766677899999999999
Q ss_pred CCCccC
Q 025987 235 GPREYA 240 (245)
Q Consensus 235 G~~p~~ 240 (245)
|.+|+.
T Consensus 225 G~~~~~ 230 (367)
T TIGR00492 225 GLYPSA 230 (367)
T ss_pred CCCcCc
Confidence 999864
No 13
>PRK03646 dadX alanine racemase; Reviewed
Probab=100.00 E-value=2.8e-38 Score=287.36 Aligned_cols=201 Identities=17% Similarity=0.164 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ + +++++||||+ ||+..+ +.+. ++++|||++++||++||+. +..||
T Consensus 9 dl~al~~N~~~i~~~~----------~-~~~i~aVVKanAYGhG~~~va~~l~--~~~~faVa~l~Ea~~LR~~Gi~~~I 75 (355)
T PRK03646 9 DLQALKQNLSIVREAA----------P-GARVWSVVKANAYGHGIERIWSALG--ATDGFAVLNLEEAITLRERGWKGPI 75 (355)
T ss_pred EHHHHHHHHHHHHHhC----------C-CCeEEEEEeeccccCCHHHHHHHHh--cCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 5689999999998876 2 4799999999 999776 5543 3999999999999999998 66687
Q ss_pred eeeee-ccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHH
Q 025987 80 KWHFV-GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 158 (245)
Q Consensus 80 ~~~~l-G~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i 158 (245)
+++ |...++++..++ +++++++|+|.++++.|++.+ .++ +++|||||||| |+|+||.|+++.++++.+
T Consensus 76 --lvl~~~~~~~~~~~~~----~~~l~~~i~s~~~l~~l~~~~--~~~-~~~vhLkvDTG--M~R~G~~~~e~~~~~~~i 144 (355)
T PRK03646 76 --LMLEGFFHAQDLELYD----QHRLTTCVHSNWQLKALQNAR--LKA-PLDIYLKVNSG--MNRLGFQPERVQTVWQQL 144 (355)
T ss_pred --EEEeCCCCHHHHHHHH----HCCCEEEECCHHHHHHHHHhc--cCC-CeEEEEEeeCC--CCCCCCCHHHHHHHHHHH
Confidence 566 666888888888 389999999999999999875 466 89999999999 999999998899999999
Q ss_pred HhcCCCeeEeEeeeeCCCCCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCC
Q 025987 159 RLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~ 236 (245)
. .+|+|+++|+||||+++++ .+.+|+++|.++.+ ++.. ..|.++|......++.++|+||||+++||.
T Consensus 145 ~-~~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~~~~------~~~~---~~h~~nSa~~~~~~~~~~d~vR~Gi~lYG~ 214 (355)
T PRK03646 145 R-AMGNVGEMTLMSHFARADHPDGISEAMARIEQAAE------GLEC---ERSLSNSAATLWHPQAHFDWVRPGIILYGA 214 (355)
T ss_pred H-hCCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh------ccCC---CeeeeCCHHHHCCccccCCeeccceeeeCC
Confidence 8 8999999999999998443 45678888877553 3332 134555555443346689999999999999
Q ss_pred CccC
Q 025987 237 REYA 240 (245)
Q Consensus 237 ~p~~ 240 (245)
+|+.
T Consensus 215 ~p~~ 218 (355)
T PRK03646 215 SPSG 218 (355)
T ss_pred CCCc
Confidence 9864
No 14
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=2.4e-36 Score=300.79 Aligned_cols=211 Identities=13% Similarity=0.145 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.|++.+ +++++++||||+ ||++.+ +.+.++|+++|||++++||+.+|++ +..||
T Consensus 465 dl~al~~N~~~i~~~~----------~~~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~l~Ea~~lr~~g~~~~I 534 (822)
T PRK11930 465 NLNAIVHNLNYYRSKL----------KPETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAYADEGVSLRKAGITLPI 534 (822)
T ss_pred hHHHHHHHHHHHHhhC----------CCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 4467777777777665 246799999999 998776 7778999999999999999999998 66687
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcC-CCCceEEEEEeCCCCCCcccCChhhHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 158 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~-~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i 158 (245)
+++|+. ++++..+++ ++++++|+|.++++.|++.+.+.+ + +++|||+|||| |+|+||.|+++.++++.+
T Consensus 535 --lvl~~~-~~~~~~~~~----~~l~~~i~s~~~l~~l~~~~~~~~~~-~~~v~l~vDtG--m~R~G~~~~~~~~~~~~i 604 (822)
T PRK11930 535 --MVMNPE-PTSFDTIID----YKLEPEIYSFRLLDAFIKAAQKKGIT-GYPIHIKIDTG--MHRLGFEPEDIPELARRL 604 (822)
T ss_pred --EEEeCC-HHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCCC-ceEEEEEeeCC--CCCCCCChHHHHHHHHHH
Confidence 677876 788888883 899999999999999999998877 7 89999999999 999999998888999999
Q ss_pred HhcCCCeeEeEeeeeCCCCCC-----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccc
Q 025987 159 RLRCPNLEFSGLMTIGMPDYT-----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTI 233 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~l 233 (245)
. ++|+|+++|+||||++.++ ++.+|+++|.++.+.+++. |... ...|.++|......++.++|+||||++|
T Consensus 605 ~-~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~-~~~~--~~~h~~nS~~~~~~~~~~~d~vR~G~~l 680 (822)
T PRK11930 605 K-KQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEA-LGYK--PIRHILNSAGIERFPDYQYDMVRLGIGL 680 (822)
T ss_pred H-hCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhc-cCCC--CcEEccCCHHHhCCccccCCeEeeCcee
Confidence 8 8999999999999997432 2567999999999988764 4322 2345555555443346689999999999
Q ss_pred cCCCccC
Q 025987 234 FGPREYA 240 (245)
Q Consensus 234 yG~~p~~ 240 (245)
||.+|..
T Consensus 681 yG~~p~~ 687 (822)
T PRK11930 681 YGVSASG 687 (822)
T ss_pred ECCCCCC
Confidence 9999863
No 15
>PRK00053 alr alanine racemase; Reviewed
Probab=100.00 E-value=2.9e-36 Score=274.99 Aligned_cols=208 Identities=19% Similarity=0.298 Sum_probs=175.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.|++.+ +.++++++|+|+ ||...+ +.+.++|+++|+|++++||..+|+. +..+|
T Consensus 9 dl~~l~~N~~~i~~~~----------~~~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~~~i 78 (363)
T PRK00053 9 DLDALRHNLRQIRKHA----------PPKSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITAPI 78 (363)
T ss_pred eHHHHHHHHHHHHHhC----------CCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCE
Confidence 5689999999998887 345899999998 998776 6667899999999999999999998 55577
Q ss_pred eeeeecc-CChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHH
Q 025987 80 KWHFVGH-LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 158 (245)
Q Consensus 80 ~~~~lG~-~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i 158 (245)
+++|+ ..++++..+++ ++++++|+|+++++.|++. +.++ +++|||+|||| |+|+||.++++.++++.+
T Consensus 79 --l~l~~~~~~~e~~~~~~----~~i~~~v~s~~~l~~l~~~--~~~~-~~~V~l~vdtG--~~R~Gi~~~e~~~~~~~i 147 (363)
T PRK00053 79 --LILGGFFPAEDLPLIIA----YNLTTAVHSLEQLEALEKA--ELGK-PLKVHLKIDTG--MHRLGVRPEEAEAALERL 147 (363)
T ss_pred --EEEeCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHh--ccCC-CeEEEEEecCC--CCcCCCCHHHHHHHHHHH
Confidence 56665 57788988883 7899999999999999985 5677 89999999999 999999998899999999
Q ss_pred HhcCCCeeEeEeeeeCCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcccc
Q 025987 159 RLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ly 234 (245)
. ++|+|++.||||||++.++ .+.+|+++|.++.+.+++ .|+ ...|.|+|..+...++.++|+||||+++|
T Consensus 148 ~-~~~~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~-~g~----~~~h~~nS~~~~~~~~~~~d~vRpG~~ly 221 (363)
T PRK00053 148 L-ACPNVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPG-KGK----PLRHLANSAAILRWPDLHFDWVRPGIALY 221 (363)
T ss_pred H-hCCCCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhh-cCC----ceEeccCCHHHhCCCcccCceEccCeeee
Confidence 8 8999999999999997332 356789999999988876 366 24567777766544466899999999999
Q ss_pred CCCccC
Q 025987 235 GPREYA 240 (245)
Q Consensus 235 G~~p~~ 240 (245)
|+.|+.
T Consensus 222 G~~p~~ 227 (363)
T PRK00053 222 GLSPSG 227 (363)
T ss_pred CCCCCc
Confidence 999974
No 16
>PRK13340 alanine racemase; Reviewed
Probab=100.00 E-value=1.7e-35 Score=273.65 Aligned_cols=211 Identities=18% Similarity=0.243 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ ++.+++++|+|+ ||+..+ +.+.++|+++|+|++++||..+|++ +..++
T Consensus 46 dl~ai~~N~~~i~~~~----------~~~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~i 115 (406)
T PRK13340 46 SPGAFRHNIKTLRSLL----------ANKSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQL 115 (406)
T ss_pred cHHHHHHHHHHHHHhC----------CCCCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCCE
Confidence 6689999999988877 244799999999 888665 7788999999999999999999998 55565
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeC-CCCCCcccCChhhHH--HHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSSCL--GIVE 156 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidt-G~~m~R~G~~~~e~~--~~~~ 156 (245)
++++...+++++.+++ ++++++|+|+++++.|++.+++.++ +++|||+||| | |+|+||.+++.. ..+.
T Consensus 116 --lvl~~~~~~el~~~~~----~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~LkVDt~G--m~R~G~~~~e~~~~~~~~ 186 (406)
T PRK13340 116 --LRVRSASPAEIEQALR----YDLEELIGDDEQAKLLAAIAKKNGK-PIDIHLALNSGG--MSRNGLDMSTARGKWEAL 186 (406)
T ss_pred --EEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC--CCCcCCChhhhhHHHHHH
Confidence 5666678899999983 7899999999999999999988888 9999999999 7 999999986543 3344
Q ss_pred HHHhcCCCeeEeEeeeeCCC-CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHH--HHHcCCCeeeeCccc
Q 025987 157 HVRLRCPNLEFSGLMTIGMP-DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ--AIEMGSTSVRIGSTI 233 (245)
Q Consensus 157 ~i~~~~~~l~l~Gl~TH~a~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~--~~~~~~d~VR~G~~l 233 (245)
.+. ++++|++.||||||++ |++.+..|+++|.++.+.+.++.|+.+ ..+++++++++.. .++.++|+||||+++
T Consensus 187 ~l~-~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~l~~~~g~~~--~~~~~h~anSa~~~~~~~~~~d~vR~G~~l 263 (406)
T PRK13340 187 RIA-TLPSLGIVGIMTHFPNEDEDEVRWKLAQFKEQTAWLIGEAGLKR--EKITLHVANSYATLNVPEAHLDMVRPGGIL 263 (406)
T ss_pred HHH-hCCCccEEEEEEECCCCCcHHHHHHHHHHHHHHHHHHHhcCCCC--CcCeEEecCCHHHHcCchhcCCeEeeCeee
Confidence 777 8999999999999997 434556799999998888754346643 2233333444432 236689999999999
Q ss_pred cCC-Cc
Q 025987 234 FGP-RE 238 (245)
Q Consensus 234 yG~-~p 238 (245)
||+ .|
T Consensus 264 yG~~~p 269 (406)
T PRK13340 264 YGDRHP 269 (406)
T ss_pred eCCCCC
Confidence 999 66
No 17
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=100.00 E-value=2.3e-35 Score=269.17 Aligned_cols=213 Identities=20% Similarity=0.261 Sum_probs=183.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcCC-CCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQL-PEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~-~~~i 79 (245)
|.++|++|++.|++.+ ++++++++|+|+ ||...+ +.+.++|+++|+|++++||..+|+++ ..++
T Consensus 7 d~~~i~~N~~~l~~~~----------~~~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~~i 76 (367)
T cd00430 7 DLDALRHNLRVIRRLL----------GPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPI 76 (367)
T ss_pred EHHHHHHHHHHHHHhC----------CCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCE
Confidence 5689999999998887 246899999999 898776 77889999999999999999999984 4355
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~ 159 (245)
+++|++++++++.+++ ++++++|||+++++.|++.+.+.++ +++|||+|||| |+|+|+.++++.++++.+.
T Consensus 77 --~~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~v~l~vdtG--~~R~G~~~~e~~~~~~~i~ 147 (367)
T cd00430 77 --LVLGGTPPEEAEEAIE----YDLTPTVSSLEQAEALSAAAARLGK-TLKVHLKIDTG--MGRLGFRPEEAEELLEALK 147 (367)
T ss_pred --EEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEcCC--CCCCCCCHHHHHHHHHHHH
Confidence 7788888999999984 6889999999999999999988887 99999999999 9999999999999999999
Q ss_pred hcCCCeeEeEeeeeCCCCC----CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 160 LRCPNLEFSGLMTIGMPDY----TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 160 ~~~~~l~l~Gl~TH~a~~~----~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
++++|++.|||||+++.+ +...+|+++|.++.+.+++ .|+.+ ..+|.|+|..+...++.++|++|||+++||
T Consensus 148 -~~~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~-~g~~~--~~v~~g~s~~~~~~~~~~~d~vR~G~~lyG 223 (367)
T cd00430 148 -ALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEE-AGIPP--PLKHLANSAAILRFPEAHFDMVRPGIALYG 223 (367)
T ss_pred -hCCCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CcEEccCCHHHhCCccccCCeEeeCeEEEC
Confidence 899999999999999732 2456789999999999887 47654 567888888776555678999999999999
Q ss_pred CCccCc
Q 025987 236 PREYAK 241 (245)
Q Consensus 236 ~~p~~~ 241 (245)
..|+..
T Consensus 224 ~~~~~~ 229 (367)
T cd00430 224 LYPSPE 229 (367)
T ss_pred cCCCcc
Confidence 998643
No 18
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=1.5e-35 Score=269.51 Aligned_cols=201 Identities=18% Similarity=0.245 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.|++.+ + +++++||||+ ||...+ +.+.+ +++|+|++++||+.+|++ +..+|
T Consensus 7 dl~~l~~N~~~l~~~~----------~-~~~l~~vvKanaYGhG~~~ia~~l~~--~~~f~Vas~~Ea~~lr~~G~~~~i 73 (354)
T cd06827 7 DLAALRHNLRLVRELA----------P-NSKILAVVKANAYGHGLVRVAKALAD--ADGFAVACIEEALALREAGITKPI 73 (354)
T ss_pred EHHHHHHHHHHHHhhC----------C-CCeEEEEEeeccccCCHHHHHHHHHc--CCEEEEccHHHHHHHHhCCCCCCE
Confidence 5688999999998887 2 3789999999 998776 55555 999999999999999998 55577
Q ss_pred eeeee-ccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHH
Q 025987 80 KWHFV-GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 158 (245)
Q Consensus 80 ~~~~l-G~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i 158 (245)
+++ |+..+++++.+++ ++++++|+|.++++.+++.+ .++ +++|||+|||| |+|+|+.++++.++++.+
T Consensus 74 --lvl~~~~~~~~~~~~~~----~~l~~~v~s~~~l~~l~~~~--~~~-~~~v~l~vDtG--m~R~Gi~~~e~~~~~~~i 142 (354)
T cd06827 74 --LLLEGFFSADELPLAAE----YNLWTVVHSEEQLEWLEQAA--LSK-PLNVWLKLDSG--MHRLGFSPEEYAAAYQRL 142 (354)
T ss_pred --EEEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhc--CCC-CeEEEEEeeCC--cCCCCCCHHHHHHHHHHH
Confidence 566 6667788888873 78999999999999999877 466 89999999999 999999998898999999
Q ss_pred HhcCCCeeEeEeeeeCCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcccc
Q 025987 159 RLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ly 234 (245)
. ++++|+++|+||||+++++ ++..|+++|.++.+.+ ++ ..|.++|......++.++|+||||+++|
T Consensus 143 ~-~~~~l~l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~~------~~---~~h~~nS~~~~~~~~~~~d~vR~G~~ly 212 (354)
T cd06827 143 K-ASPNVASIVLMTHFACADEPDSPGTAKQLAIFEQATAGL------PG---PRSLANSAAILAWPEAHGDWVRPGIMLY 212 (354)
T ss_pred H-hCCCceEEEEEeeccCCCCCCcHHHHHHHHHHHHHHhcc------CC---CeeecCCHHHHCCccccCceEccCceee
Confidence 8 8999999999999998432 3456777777755531 11 1245555444433466899999999999
Q ss_pred CCCccC
Q 025987 235 GPREYA 240 (245)
Q Consensus 235 G~~p~~ 240 (245)
|.+|+.
T Consensus 213 G~~p~~ 218 (354)
T cd06827 213 GASPFA 218 (354)
T ss_pred CCCCCc
Confidence 999854
No 19
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=100.00 E-value=1.3e-35 Score=268.84 Aligned_cols=213 Identities=19% Similarity=0.219 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeeeccC
Q 025987 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHL 87 (245)
Q Consensus 9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~lG~~ 87 (245)
+|++|++.|++.+. +.+++++||+|+||+..+ +.+.++|+++|+|++++||+.+|+.+..+| ++.+++
T Consensus 1 ~l~~Ni~~~~~~~~---------~~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~~~I--li~~~~ 69 (345)
T cd07376 1 ALEANISRMAARAR---------ASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGVKDI--LMAYPL 69 (345)
T ss_pred ChHHHHHHHHHHHH---------HcCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCCCeE--EEECCc
Confidence 47899999998883 256899999999998665 778899999999999999999999843677 666777
Q ss_pred C-hHHHHHHHccCC-CccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHH--HHHhcCC
Q 025987 88 Q-SNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVE--HVRLRCP 163 (245)
Q Consensus 88 ~-~~~~~~~~~~~~-~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~--~i~~~~~ 163 (245)
. +++++.+++... .++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.+++...+.. .+. +++
T Consensus 70 ~~~~~~~~~~~l~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~ID~G--~~R~Gv~~~~~~~l~~~~~i~-~~~ 145 (345)
T cd07376 70 VGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGV-RLRVMLEVDVG--GHRSGVRPEEAAALALADAVQ-ASP 145 (345)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEeCCC--CCcCCCCCcHHHHHHHHHHhc-cCC
Confidence 6 777777753222 26799999999999999999988888 99999999999 9999999754433332 345 689
Q ss_pred CeeEeEeeeeCCCC-CC--------CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHH-HcCCCeeeeCccc
Q 025987 164 NLEFSGLMTIGMPD-YT--------STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTI 233 (245)
Q Consensus 164 ~l~l~Gl~TH~a~~-~~--------~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~-~~~~d~VR~G~~l 233 (245)
+|++.|||||+++. +. ....++++|.++.+.++ . |+++ ..+|+|+|+++.... ..++|+||||+++
T Consensus 146 ~l~l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-g~~~--~~vs~G~S~~~~~~~~~~~~~~vR~G~~l 221 (345)
T cd07376 146 GLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE-R-GLAC--PTVSGGGTPTYQLTAGDRAVTELRAGSYV 221 (345)
T ss_pred CeEEeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH-c-CCCC--CEEEeCCCcChhhcccCCCCEEEcCceEE
Confidence 99999999999963 22 22356666766666655 2 6653 678999999988664 5689999999999
Q ss_pred cCCCccC
Q 025987 234 FGPREYA 240 (245)
Q Consensus 234 yG~~p~~ 240 (245)
||+++|.
T Consensus 222 yg~~~~~ 228 (345)
T cd07376 222 FMDTGFD 228 (345)
T ss_pred ecchHHh
Confidence 9999874
No 20
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=100.00 E-value=1.4e-34 Score=263.63 Aligned_cols=216 Identities=20% Similarity=0.241 Sum_probs=172.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCc--eee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDI--KWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i--~~~ 82 (245)
|.++|++|++.|++.+. .+.++++|+|+||+..+ +.++++|+++|+|++++||+.+++.+.+++ .|+
T Consensus 15 d~~~l~~Ni~~~~~~~~----------~~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ill~~~ 84 (361)
T cd06821 15 YPDRIEENIRRMIRMAG----------DPQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAPDVLLAYP 84 (361)
T ss_pred eHHHHHHHHHHHHHHHh----------cCCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCCeEEEeCC
Confidence 55888888888888773 34589999999999775 778899999999999999999999843453 232
Q ss_pred eeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChh-hHHHHHHHHHhc
Q 025987 83 FVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVRLR 161 (245)
Q Consensus 83 ~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~-e~~~~~~~i~~~ 161 (245)
+.|...++.++.+.+ ....+++++|||.++++.|++++.+.++ +++|||+||+| |+|+|+.++ ++.++++.+. +
T Consensus 85 ~~~~~~~~~~~l~~~-~~~~~~~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~Vd~G--~~R~Gv~~~~~~~~l~~~i~-~ 159 (361)
T cd06821 85 LVGPNIERFLELAKK-YPGTRFSALVDDLEAAEALSAAAGSAGL-TLSVLLDVNTG--MNRTGIAPGEDAEELYRAIA-T 159 (361)
T ss_pred CCHHHHHHHHHHHhh-CCCCeEEEEECCHHHHHHHHHHHHHcCC-eEEEEEEeCCC--CCcCCCCChHHHHHHHHHHh-h
Confidence 224322223333331 0124689999999999999999998888 99999999999 999999986 7999999999 8
Q ss_pred CCCeeEeEeeeeCCC---CC-----CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccc
Q 025987 162 CPNLEFSGLMTIGMP---DY-----TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTI 233 (245)
Q Consensus 162 ~~~l~l~Gl~TH~a~---~~-----~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~l 233 (245)
+|+|++.|||+|.++ .+ ....++++.|.++.+.+++. |+.+ ..+|+|+|+++....+.+.|+||||+++
T Consensus 160 ~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~v~~GgS~~~~~~~~~~~~~vr~G~~l 236 (361)
T cd06821 160 LPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAA-GLPV--PELVAGGTPSFPFHAAYTDVECSPGTFV 236 (361)
T ss_pred CCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC--CEEEECCCcchhhhccCCCcEECCceEE
Confidence 999999999986664 11 12346788888888888874 7653 6789999999887766678999999999
Q ss_pred cCCCcc
Q 025987 234 FGPREY 239 (245)
Q Consensus 234 yG~~p~ 239 (245)
||+.|+
T Consensus 237 ~gd~~~ 242 (361)
T cd06821 237 LWDAGY 242 (361)
T ss_pred EecHHH
Confidence 999986
No 21
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=100.00 E-value=7.6e-34 Score=260.94 Aligned_cols=220 Identities=15% Similarity=0.176 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCC--CeeecccHHHHHHhhcC-CCCCcee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGH--RSFGENYVQEIVDKAPQ-LPEDIKW 81 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~--~~~~va~~~Ea~~lr~~-~~~~i~~ 81 (245)
|.++|++|++.|++.+. +.+++++||+|+||+..+ +.++++|+ ++|+|++++||+.+|+. +..+|.-
T Consensus 12 dl~al~~Ni~~m~~~~~---------~~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~d 82 (389)
T cd06817 12 DRAKFKRNCERMLQRAK---------ALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVDD 82 (389)
T ss_pred EHHHHHHHHHHHHHHHH---------HcCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhcccccccc
Confidence 45899999999998875 236899999999999776 77788999 99999999999999998 5445422
Q ss_pred eeec-cCChHHHHHHHccCCCcc-EEEeeCCHHHHHHHHHH-HHhcCCCCceEEEEEeCCCCCCcccCCh--hhHHHHHH
Q 025987 82 HFVG-HLQSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKA-VSNLGRKPLKVLVQVNTSGEESKSGIDP--SSCLGIVE 156 (245)
Q Consensus 82 ~~lG-~~~~~~~~~~~~~~~~~~-l~~~v~s~~~a~~l~~~-a~~~~~~~~~V~lkidtG~~m~R~G~~~--~e~~~~~~ 156 (245)
+++| ++.+++++.+++..+..+ ++++|||.++++.|++. +.+.++ +++|||+|||| |+|+||.+ +++.++++
T Consensus 83 illa~~~~~~~~~~l~~l~~~~~~i~~~Vds~~~l~~l~~~~a~~~g~-~~~V~lkvDtG--m~R~Gv~~~~~~~~~l~~ 159 (389)
T cd06817 83 ILYGLPVPPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGK-KWSVFIKVDCG--THRAGVPPESEDAKELIQ 159 (389)
T ss_pred EEEECCCCHHHHHHHHHHHhhcCceEEEECCHHHHHHHHHHHhhccCC-ceEEEEEEcCC--CCcCCCCCChHHHHHHHH
Confidence 4557 467889999885211124 99999999999999998 877787 99999999999 99999986 35788999
Q ss_pred HHHhc-CCCeeEeEeeeeCCCCCC---C------cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHH------
Q 025987 157 HVRLR-CPNLEFSGLMTIGMPDYT---S------TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI------ 220 (245)
Q Consensus 157 ~i~~~-~~~l~l~Gl~TH~a~~~~---~------~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~------ 220 (245)
.+. + +|+|++.|+|||+++... . ....++...++.+.|++.+|+.+ ..+|.|+|+++....
T Consensus 160 ~i~-~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~vs~GgTpt~~~~~~~~~~~ 236 (389)
T cd06817 160 KLE-KASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRK--LTLSVGATPTAHAAEALVLIP 236 (389)
T ss_pred HHH-hhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CEEEeCCCcchhhhccccccc
Confidence 998 8 999999999999997431 1 11234455666666664137653 788999999887532
Q ss_pred ---HcCCCeeeeCccccCCCccC
Q 025987 221 ---EMGSTSVRIGSTIFGPREYA 240 (245)
Q Consensus 221 ---~~~~d~VR~G~~lyG~~p~~ 240 (245)
..+.+++|||+|+|.+..|.
T Consensus 237 ~~~~~~~tel~pG~Yvf~D~~~~ 259 (389)
T cd06817 237 APSLSGLLELHAGNYPFYDLQQV 259 (389)
T ss_pred cccCCcceEEccCccccccHHHH
Confidence 24679999999999997663
No 22
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=100.00 E-value=1.3e-33 Score=256.41 Aligned_cols=215 Identities=20% Similarity=0.285 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCc--eee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDI--KWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i--~~~ 82 (245)
|.++|++|++.|++.+. +.++++++|+|+||+..+ +.+.++|+++|+|++++||..+++.+..+| .++
T Consensus 9 d~~~l~~Ni~~~~~~~~---------~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~i~i~~~ 79 (353)
T cd06820 9 DLDRLERNIARMQAYAD---------AHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLSDIFIAYP 79 (353)
T ss_pred eHHHHHHHHHHHHHHHH---------HcCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCCeEEEECC
Confidence 55889999999988874 246899999999998765 778899999999999999999999843443 333
Q ss_pred eeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHHHHhc
Q 025987 83 FVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLR 161 (245)
Q Consensus 83 ~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~i~~~ 161 (245)
++|+.+.+++..++ +..+++++|||+++++.|++++++.++ +++|+|+||+| |+|+|+.+ +++.++++.+. +
T Consensus 80 ~~~~~~~~~l~~l~---~~~~~~~~vds~~~l~~L~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~-~ 152 (353)
T cd06820 80 IVGRQKLERLRALA---ERVTLSVGVDSAEVARGLAEVAEGAGR-PLEVLVEVDSG--MNRCGVQTPEDAVALARAIA-S 152 (353)
T ss_pred cCCHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEECCC--CCcCCCCChHHHHHHHHHHH-h
Confidence 34554455566666 357899999999999999999999998 99999999999 99999998 89999999999 8
Q ss_pred CCCeeEeEeeeeCCCCCC------CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHH-HcCCCeeeeCcccc
Q 025987 162 CPNLEFSGLMTIGMPDYT------STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTIF 234 (245)
Q Consensus 162 ~~~l~l~Gl~TH~a~~~~------~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~-~~~~d~VR~G~~ly 234 (245)
+|+|++.|+|||+++.+. ...++++.+.++.+.+++ .|+. ...+|+|+|++++.+. ..++|++|||+++|
T Consensus 153 ~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~--~~~vs~Ggs~t~~~~~~~~~~~elR~G~~i~ 229 (353)
T cd06820 153 APGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEE-AGLE--PPVVSGGSTPTLWRSHEVPGITEIRPGTYIF 229 (353)
T ss_pred CCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHh-cCCC--CCEEEeCcChhhhhhhccCCceEEccccEEe
Confidence 999999999999997331 344677888888888887 4765 3788999999988663 46899999999999
Q ss_pred CCCcc
Q 025987 235 GPREY 239 (245)
Q Consensus 235 G~~p~ 239 (245)
|+..+
T Consensus 230 ~d~~~ 234 (353)
T cd06820 230 NDASQ 234 (353)
T ss_pred ecHHH
Confidence 99755
No 23
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=100.00 E-value=4.8e-32 Score=248.42 Aligned_cols=214 Identities=14% Similarity=0.147 Sum_probs=166.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHH-HHHHH-HcCCCeeecccHHHHHHhhcC-CCCCceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVY-DAGHRSFGENYVQEIVDKAPQ-LPEDIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~-i~~~~-~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~ 82 (245)
|.++|++|++.|++.+ +.+++++||+|+|+... ++.++ ++|+++|+|++++||+++|+. ...|| +
T Consensus 15 Dl~al~~Ni~~m~~~~----------~~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~~dI--L 82 (379)
T cd06814 15 DKDRLDHNIDLLREHL----------AGSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPDADI--L 82 (379)
T ss_pred EHHHHHHHHHHHHHhh----------CCCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCCcCe--E
Confidence 4588999999988887 25789999999999854 46555 789999999999999999988 44477 4
Q ss_pred eec-cCChHHHHHHHc-cCC-----CccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChh-hHHHH
Q 025987 83 FVG-HLQSNKAKTLLG-GVP-----NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-SCLGI 154 (245)
Q Consensus 83 ~lG-~~~~~~~~~~~~-~~~-----~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~-e~~~~ 154 (245)
+| ++.++++..+++ +.+ .++++++|||.++++.|++.+.+.++ +++|||||||| |+|+||.++ ++.++
T Consensus 83 -l~~p~~~~~~~r~~~~l~~~~~~~~~~l~~~Vds~e~l~~l~~~a~~~g~-~l~V~lkVDtG--m~R~Gv~~~~~~~~l 158 (379)
T cd06814 83 -LGKPMPVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGL-TLRINLELDVG--LHRGGFADPQTLPKA 158 (379)
T ss_pred -EeCCCCcHHHHHHHhhccccccchhcCEEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeCCC--CCCCCCCCHHHHHHH
Confidence 56 435666655532 111 36799999999999999999988888 99999999999 999999884 68899
Q ss_pred HHHHHhcCCCeeEeEeeeeCCCC---CCC---cH------HHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHH-
Q 025987 155 VEHVRLRCPNLEFSGLMTIGMPD---YTS---TP------ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE- 221 (245)
Q Consensus 155 ~~~i~~~~~~l~l~Gl~TH~a~~---~~~---~~------~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~- 221 (245)
++.+. ++++|+++|||||.++. .+. .. +.++.+.++.+.++. .|+. +..+|.|+|++++....
T Consensus 159 ~~~i~-~~~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~vs~GgTpT~~~~~~~ 234 (379)
T cd06814 159 LTAID-APPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLG-AHTQ--KLTLNTGGSPTYRLYEGD 234 (379)
T ss_pred HHHHH-hCCCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhc-cCCC--ccEEecCCCcceEEEcCC
Confidence 99999 89999999999999962 111 11 122334444444444 2665 47889999999875443
Q ss_pred cCCCeeeeCccccCCCcc
Q 025987 222 MGSTSVRIGSTIFGPREY 239 (245)
Q Consensus 222 ~~~d~VR~G~~lyG~~p~ 239 (245)
.++|++|||+++|.+..|
T Consensus 235 ~~~tE~~pGsy~f~D~~~ 252 (379)
T cd06814 235 GPVNEVSAGSALVKPTDF 252 (379)
T ss_pred CcceEeccccEEEccccc
Confidence 568999999999999988
No 24
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=100.00 E-value=2.4e-31 Score=244.17 Aligned_cols=212 Identities=19% Similarity=0.189 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccc--ChHHHHHHHHcCCCeeecccHHHHHHhhcC-CCC-Ccee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTK--PVSLIRQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKW 81 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaH--g~~~i~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-~i~~ 81 (245)
|.++|++|++.+++.+. ..++++++|+|++ +...++.+.++|+++|+|++++||..+|++ ++. .|
T Consensus 34 Dl~~I~~N~~~l~~~~~---------~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~Ea~~lr~aGi~~~~I-- 102 (382)
T cd06811 34 DLDQIEENARLLAETAE---------KYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHV-- 102 (382)
T ss_pred cHHHHHHHHHHHHHHHh---------hCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHHHHHHHHcCCCHHhE--
Confidence 56888899988888773 1368999999996 444457788999999999999999999998 433 33
Q ss_pred eeeccCChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcc------cCChhhHHHH
Q 025987 82 HFVGHLQSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKS------GIDPSSCLGI 154 (245)
Q Consensus 82 ~~lG~~~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~------G~~~~e~~~~ 154 (245)
..++..++++++.+++ +++ +++|+|++++++|++.|++.|+ +++|||+|||| |+|+ ||.++++.++
T Consensus 103 ~~l~~~~~~el~~~v~----~~~~~i~V~s~~~l~~L~~~A~~~g~-~~~V~LrVdtg--~~ri~~g~~~G~~~~e~~~~ 175 (382)
T cd06811 103 GHLVQIPRHQVPAVLA----MRPEVITVYSLEKAREISDAAVELGR-VQDVLLRVYGD--EDTLYPGQEGGFPLEELPAV 175 (382)
T ss_pred EEccCCCHHHHHHHHH----cCCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEECC--CCccccCccceecHHHHHHH
Confidence 3344456889999984 554 7999999999999999998998 99999999999 9987 9998899999
Q ss_pred HHHHHhcCCCeeEeEeeeeCCC---CCCC----cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc---ccHHHHHHcCC
Q 025987 155 VEHVRLRCPNLEFSGLMTIGMP---DYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMS---GDFEQAIEMGS 224 (245)
Q Consensus 155 ~~~i~~~~~~l~l~Gl~TH~a~---~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s---~~~~~~~~~~~ 224 (245)
++.+. ++++|++.|+ |||++ |++. ...+++.|.++.+.+++. |+.. .++|+|++ .+++...+.++
T Consensus 176 ~~~i~-~l~~l~l~Gi-thf~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~~-g~~~--~~is~Gga~ss~~l~~~~~~~~ 250 (382)
T cd06811 176 LAAIK-ALPGIRIAGL-TSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKR-GIEI--LQLNAPSATSCATLPLLAEYGV 250 (382)
T ss_pred HHHHH-cCCCcEEEeE-cccchhhcccCcccccHHHHHHHHHHHHHHHHHC-CCCC--eEEccCCCcchhhHHHHHhCCC
Confidence 99998 8999999999 88875 3221 234778888888888874 7653 66776533 34455567899
Q ss_pred CeeeeCccccCCCccC
Q 025987 225 TSVRIGSTIFGPREYA 240 (245)
Q Consensus 225 d~VR~G~~lyG~~p~~ 240 (245)
|++|||++|||+.|+.
T Consensus 251 t~vRpG~~LyG~~p~~ 266 (382)
T cd06811 251 THGEPGHALTGTTPLH 266 (382)
T ss_pred cEEeccEEEecCcchh
Confidence 9999999999999974
No 25
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.97 E-value=1.6e-29 Score=232.68 Aligned_cols=214 Identities=17% Similarity=0.179 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHH-cCCCeeecccHHHHHHhhcCCCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYD-AGHRSFGENYVQEIVDKAPQLPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~-~G~~~~~va~~~Ea~~lr~~~~~~i~~~~ 83 (245)
|.++|++|++.|++.. .+.++++|+|+|....+ +.+++ .|+++|+|++++||+.+|+++..+| ++
T Consensus 17 Dldal~~N~~~l~~~~-----------~~~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~~~I--Ll 83 (388)
T cd06813 17 DLDALDANAADLVRRA-----------GGKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGFDDI--LV 83 (388)
T ss_pred EHHHHHHHHHHHHHHc-----------CCCcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCCCeE--EE
Confidence 5688999999888776 35689999999998654 65665 6999999999999999999843676 44
Q ss_pred ecc-CChHHHHHHHccCC-CccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCC----------hhhH
Q 025987 84 VGH-LQSNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID----------PSSC 151 (245)
Q Consensus 84 lG~-~~~~~~~~~~~~~~-~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~----------~~e~ 151 (245)
.++ ..+.++..+++..+ ..+++++|||.++++.|++.+.+.++ +++|||+|||| |+|.|+. ++++
T Consensus 84 ~~p~~~~~~l~~~~~~~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~IDtG--m~R~G~~~G~~Rs~~~~~~~~ 160 (388)
T cd06813 84 AYPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRV-EVRVCIDIDAS--LRFGGLHFGVRRSPLHTPAQA 160 (388)
T ss_pred eCCCCCHHHHHHHHhhhccCCeEEEEEcCHHHHHHHHHHHHhcCC-ceEEEEEECCC--ccccccccCcCCCCCCCHHHH
Confidence 434 36778888884100 13789999999999999999988888 99999999999 9988873 6788
Q ss_pred HHHHHHHHhcCCCeeEeEeeeeCCC-C---C-CCc---------------HHHHHHHH-HHHHHHHHHhCCCCCCCeeec
Q 025987 152 LGIVEHVRLRCPNLEFSGLMTIGMP-D---Y-TST---------------PENFRTLL-NCRAEVCKALGMAEDQCELSM 210 (245)
Q Consensus 152 ~~~~~~i~~~~~~l~l~Gl~TH~a~-~---~-~~~---------------~~~~~~~~-~~~~~l~~~~g~~~~~~~~S~ 210 (245)
.++++.+. ++++|++.|||||+++ . + ... ..|+..+. ++.+.|++ .|+. +..+++
T Consensus 161 ~~l~~~i~-~~~~l~l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~-~g~~--~~~vNs 236 (388)
T cd06813 161 LALAKAIA-ARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRA-EGED--LEFVNG 236 (388)
T ss_pred HHHHHHHh-cCCCcEEEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC--CCEEeC
Confidence 89999998 8999999999999664 1 1 111 11222222 55556665 3654 355678
Q ss_pred cCcccHHHHH-HcCCCeeeeCccccCCCcc
Q 025987 211 GMSGDFEQAI-EMGSTSVRIGSTIFGPREY 239 (245)
Q Consensus 211 g~s~~~~~~~-~~~~d~VR~G~~lyG~~p~ 239 (245)
|+|++++... +.++|+||||+++||+.|+
T Consensus 237 gGt~s~~~~~~~~~~tevrpGs~lyg~~~~ 266 (388)
T cd06813 237 GGTGSLESTAADAVVTEVTAGSGLYAPALF 266 (388)
T ss_pred CCchhheeecCCCCceEeccceEEecchhh
Confidence 8888877332 3467899999999999886
No 26
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.97 E-value=1.5e-29 Score=230.11 Aligned_cols=216 Identities=19% Similarity=0.223 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|.++|++|++.|++.+.. .++++++++|+|+...+ +.+.++|+++|+|++++||..+++++.++| ++.
T Consensus 13 d~~~l~~N~~~l~~~~~~---------~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~i--li~ 81 (358)
T cd06819 13 DLDALERNIKRMAAFAKA---------HGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIRDI--LIT 81 (358)
T ss_pred EHHHHHHHHHHHHHHHHH---------cCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCCeE--EEE
Confidence 558899999999888742 36789999999998665 778899999999999999999999844555 333
Q ss_pred c-cCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHHHHhcC
Q 025987 85 G-HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRC 162 (245)
Q Consensus 85 G-~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~i~~~~ 162 (245)
- .+.+.+...+++.+.++++.++|||+++++.|++.+.+.++ +++|+|+||+| |+|+|+.+ +++.++++.+. ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~~vDs~~~l~~l~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~-~~ 157 (358)
T cd06819 82 NEVVGPAKIARLAALARRAPLIVCVDHPDNVRALAAAAVEAGV-RLDVLVEIDVG--QGRCGVPPGEAALALARTIA-AL 157 (358)
T ss_pred CCcCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCcCCCCChHHHHHHHHHHH-hC
Confidence 1 12233333322211357899999999999999999998898 99999999999 99999984 78999999999 89
Q ss_pred CCeeEeEeeeeCCC------CCC---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHH-cCCCeeeeCcc
Q 025987 163 PNLEFSGLMTIGMP------DYT---STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MGSTSVRIGST 232 (245)
Q Consensus 163 ~~l~l~Gl~TH~a~------~~~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~-~~~d~VR~G~~ 232 (245)
|+|++.||++|.++ .++ ...++++.|.++.+.+++ .|+.+ ..+|+|+|+++..... .+.|++|||++
T Consensus 158 ~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~vsgGgs~~~~~~~~~~~~~elr~G~~ 234 (358)
T cd06819 158 PGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEA-AGLPC--EIVTGGGTGTYEFEAASGVYTELQAGSY 234 (358)
T ss_pred CCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CEEecCCCcChhhhccCCcceEEccCce
Confidence 99999999775553 111 234577788888888887 47754 6779999999876544 45899999999
Q ss_pred ccCCCcc
Q 025987 233 IFGPREY 239 (245)
Q Consensus 233 lyG~~p~ 239 (245)
+|++..+
T Consensus 235 i~~d~~~ 241 (358)
T cd06819 235 VFMDADY 241 (358)
T ss_pred EEecHHH
Confidence 9998655
No 27
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.97 E-value=4.6e-29 Score=210.04 Aligned_cols=202 Identities=19% Similarity=0.179 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeeeccCC
Q 025987 10 AVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVGHLQ 88 (245)
Q Consensus 10 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~lG~~~ 88 (245)
|++|++.+++.+ +.++++++|+|+.+...+ +.+.++ +++|+|++++|+..+++.+..+-.+++.|+..
T Consensus 1 l~~N~~~i~~~~----------~~~~~i~~~vKan~~~~i~~~~~~~-~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~ 69 (211)
T cd06808 1 IRHNYRRLREAA----------PAGITLFAVVKANANPEVARTLAAL-GTGFDVASLGEALLLRAAGIPPEPILFLGPCK 69 (211)
T ss_pred ChHHHHHHHHhC----------CCCCEEEEEEecCCCHHHHHHHHHc-CCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCC
Confidence 478999998888 237899999999987554 767777 78999999999999998843222237888887
Q ss_pred -hHHHHHHHccCCCc-cEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCee
Q 025987 89 -SNKAKTLLGGVPNL-DMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (245)
Q Consensus 89 -~~~~~~~~~~~~~~-~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~ 166 (245)
+++++.+++ + +++++++|.++++.|.+.+++.+. +++|+|+||+|..|+|+|+.++++.++++.+. ++|+++
T Consensus 70 ~~~~l~~~~~----~~~~~~~ids~~~l~~l~~~~~~~~~-~~~v~lrv~~g~~~~R~G~~~~e~~~~~~~i~-~~~~l~ 143 (211)
T cd06808 70 QVSELEDAAE----QGVIVVTVDSLEELEKLEEAALKAGP-PARVLLRIDTGDENGKFGVRPEELKALLERAK-ELPHLR 143 (211)
T ss_pred CHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHHhCC-CceEEEEEcCCCCCCCCCCCHHHHHHHHHHHH-hCCCCc
Confidence 789999984 5 688999999999999999988888 99999999998779999999999999999999 899999
Q ss_pred EeEeeeeCCCCCC---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHH---HHcCCCeeeeCc
Q 025987 167 FSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA---IEMGSTSVRIGS 231 (245)
Q Consensus 167 l~Gl~TH~a~~~~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~---~~~~~d~VR~G~ 231 (245)
+.|+|||+++.+. ....+++.|.++++.+++ .|+.. ..+|.|++..++.. ++.++|+||||+
T Consensus 144 l~Gl~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~i~~Ggg~~~~~~~~~~~~~~~~vR~G~ 211 (211)
T cd06808 144 LVGLHTHFGSADEDYSPFVEALSRFVAALDQLGE-LGIDL--EQLSIGGSFAILYLQELPLGTFIIVEPGR 211 (211)
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEECCCCCcCcCCCCCCCceEEeCCCC
Confidence 9999999997322 345678889998888887 47653 56788877776655 566899999996
No 28
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.96 E-value=5.1e-28 Score=221.38 Aligned_cols=215 Identities=18% Similarity=0.189 Sum_probs=167.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|.++|++|++.|++.+. +.++++++|+|+|++..+ +.+.++|+++|+|++++||..+++++..++ ++..
T Consensus 12 d~~~l~~Ni~~~~~~~~---------~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~~i-l~~~ 81 (374)
T cd06812 12 DEARMDRNIARLRQRLS---------RLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYRDI-LYAV 81 (374)
T ss_pred eHHHHHHHHHHHHHHHH---------HcCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCee-EEeC
Confidence 56899999999999884 236899999999998665 778899999999999999999999843444 2344
Q ss_pred ccCChHHHHHHHccCC-CccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChh-h-HHHHHHHHHhc
Q 025987 85 GHLQSNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-S-CLGIVEHVRLR 161 (245)
Q Consensus 85 G~~~~~~~~~~~~~~~-~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~-e-~~~~~~~i~~~ 161 (245)
+ +.+.++..+++.++ ..++.++|||.+.++.|++.+.+.++ +++|+|+||+| |+|+|+.++ + +.++++.+. .
T Consensus 82 ~-~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~~l~~~i~-~ 156 (374)
T cd06812 82 G-IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGV-RFPVLIEIDCD--GHRGGIAPDSDALLEIARILH-D 156 (374)
T ss_pred C-CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeCCC--CCcCCCCCCcHHHHHHHHHHh-c
Confidence 5 35667766653211 24688999999999999999998898 99999999999 999999884 3 566677775 4
Q ss_pred CCCeeEeEeeeeCCCC----C-C----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHH-cCCCeeeeCc
Q 025987 162 CPNLEFSGLMTIGMPD----Y-T----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MGSTSVRIGS 231 (245)
Q Consensus 162 ~~~l~l~Gl~TH~a~~----~-~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~-~~~d~VR~G~ 231 (245)
++|++.|+|+|+++. + + ....+++.|.++.+.+++. |+.+ ..+|.|+|+++..... .+.|++|||+
T Consensus 157 -~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~v~~Ggt~~~~~~~~~~~~~el~~G~ 232 (374)
T cd06812 157 -GGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAA-GLPC--PVVSVGSTPTAHFAEDLTGVTEVRAGV 232 (374)
T ss_pred -CCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC--CEEeecCChhhhhhcccCCceEeccCc
Confidence 899999999999642 1 1 1223555688888888874 8753 7789998988775433 4679999999
Q ss_pred cccCCCcc
Q 025987 232 TIFGPREY 239 (245)
Q Consensus 232 ~lyG~~p~ 239 (245)
++|.+.++
T Consensus 233 y~~~D~~~ 240 (374)
T cd06812 233 YVFFDLVM 240 (374)
T ss_pred eeeccHHH
Confidence 99997665
No 29
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.96 E-value=3.3e-27 Score=216.87 Aligned_cols=219 Identities=16% Similarity=0.212 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceee--
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWH-- 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~-- 82 (245)
|.++|++|++.|++.+. +.++++++|+|+|....+ +.+.++|+++|+|++++||..+|+....++.+.
T Consensus 9 dl~~l~~N~~~m~~~~~---------~~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~~il~~~~ 79 (382)
T cd06818 9 DASALAHNLAWMQAFAA---------AHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVRRVLLANQ 79 (382)
T ss_pred EHHHHHHHHHHHHHHHh---------hcCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCCeEEEecC
Confidence 55889999999988874 246899999999998665 777899999999999999999998843444221
Q ss_pred eeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHHHHhc
Q 025987 83 FVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLR 161 (245)
Q Consensus 83 ~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~i~~~ 161 (245)
++|+...+++..+++.....++.+.|||.++++.|++.+.+.++ +++|+|+||+| |+|.|+.+ +++.++++.+. +
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~-~~~v~i~vn~g--~~R~G~~~~~~~~~l~~~i~-~ 155 (382)
T cd06818 80 LVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALER-PLNVLIELGVP--GGRTGVRTEAEALALADAIA-A 155 (382)
T ss_pred cCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCCCCCCCHHHHHHHHHHHH-c
Confidence 24555555676776311135688999999999999999988898 99999999998 99999975 77889999999 8
Q ss_pred CCCeeEeEeeeeCCCC---C-C----CcHHHHHHHHHHHHHHHHHhCC-CCCCCeeeccCcccHHHHHHc--C-------
Q 025987 162 CPNLEFSGLMTIGMPD---Y-T----STPENFRTLLNCRAEVCKALGM-AEDQCELSMGMSGDFEQAIEM--G------- 223 (245)
Q Consensus 162 ~~~l~l~Gl~TH~a~~---~-~----~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~S~g~s~~~~~~~~~--~------- 223 (245)
+|+|++.|||+|.++. . . ...+.++.+.++.+.++++ ++ ..+...+|+|||+++..+.+. +
T Consensus 156 ~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~ilSgGgT~~~~~~~~~~~~~~~~~~~ 234 (382)
T cd06818 156 SPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAER-GLFPDRELILTAGGSAWFDLVAEALAALALDGPV 234 (382)
T ss_pred CCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEEEecCCHhHHHHHHhhcccccCCce
Confidence 9999999999998752 1 1 1224577778888888764 54 223457899999999864321 2
Q ss_pred CCeeeeCccccCCCc
Q 025987 224 STSVRIGSTIFGPRE 238 (245)
Q Consensus 224 ~d~VR~G~~lyG~~p 238 (245)
.+++|||.++|++..
T Consensus 235 ~~el~pG~y~~~D~g 249 (382)
T cd06818 235 TLVLRSGCYVTHDHG 249 (382)
T ss_pred eEEEecCeeEEecHH
Confidence 579999999999963
No 30
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.91 E-value=4.3e-23 Score=179.78 Aligned_cols=212 Identities=19% Similarity=0.237 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccc-ChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeeeeccCC
Q 025987 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTK-PVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHFVGHLQ 88 (245)
Q Consensus 12 ~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaH-g~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~lG~~~ 88 (245)
-|+++|++|.+.+++.+.+ .++++++|+|-. |...+ ..+...|+..+++++++|++.+|++ ++.|. +++-...
T Consensus 8 Idl~~ieeNak~~~~~a~~--~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~--~Llr~P~ 83 (353)
T COG3457 8 IDLDKIEENAKVLQETAAR--YGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPG--HLLRSPC 83 (353)
T ss_pred EeHHHHHHhHHHHHHHHHH--cCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCc--eEeeccc
Confidence 3455555555555555554 789999999995 45565 6678899999999999999999999 77775 6665455
Q ss_pred hHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh---hhHHHHHHHHHhcCCCe
Q 025987 89 SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP---SSCLGIVEHVRLRCPNL 165 (245)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~---~e~~~~~~~i~~~~~~l 165 (245)
.++++..++ +.| +.++++++.|+.++++|.+.|+ ..+|.++||.| ..|.|+.+ +++.+.+++|. ++|++
T Consensus 84 ~sei~~vv~---~~D-vs~~sel~~arqlse~A~~~Gk-~h~VlLmVd~~--DlreG~~~~~~~~l~~~V~eI~-~lkGi 155 (353)
T COG3457 84 MSEIEDVVR---KVD-VSTVSELDTARQLSEAAVRMGK-VHDVLLMVDYG--DLREGQWGFLIEDLEETVEEIQ-QLKGI 155 (353)
T ss_pred HHHHHHHHH---hcC-eEEEecHHHHHHHHHHHHHhCc-ceeEEEEEEcc--cccCcchhhHHHHHHHHHHHHh-cCCCc
Confidence 688999995 578 4779999999999999999998 99999999999 69999886 88999999999 99999
Q ss_pred eEeEeeeeCCC--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHH---HcCCCeeeeCccccCCC
Q 025987 166 EFSGLMTIGMP--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI---EMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 166 ~l~Gl~TH~a~--~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~---~~~~d~VR~G~~lyG~~ 237 (245)
++.||-|||++ +.-++.+.+..|.+..+.|++..|+.. ..+|+|++.+++.-+ .++.|..|||-+++|-.
T Consensus 156 ~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~l--~~vsagnats~~~L~~~~~~~inhlriG~al~~g~ 230 (353)
T COG3457 156 HLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQL--KQVSAGNATSLTLLPMGSLPGINHLRIGEALTGGV 230 (353)
T ss_pred eEEeeecccccccCcCCCcccHHHHHHHHHHHHHhcCcee--EEecCCCccchhhhhcccccccccccccceeeccc
Confidence 99999999998 556888888889998899887447763 778999988876432 45799999999999984
No 31
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.89 E-value=4.9e-22 Score=179.63 Aligned_cols=215 Identities=17% Similarity=0.179 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|++++.+|++++++++ ++ .+++++||+|+|.+..+ +.++++|+.++.++++.|++.+..++-++|-| -.
T Consensus 24 D~dr~~~Ni~r~qa~~-------~~--~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi~dIl~-a~ 93 (368)
T COG3616 24 DLDRLDGNIDRMQARA-------DD--HGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGIDDILL-AY 93 (368)
T ss_pred hHHHHhhhHHHHHHhc-------cc--cCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCccceEE-ec
Confidence 4466666666666655 43 68999999999998775 77889999999999999999999886566511 12
Q ss_pred ccCChHHHHHHHccCCCcc-EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHHHHhcC
Q 025987 85 GHLQSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRC 162 (245)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~-l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~i~~~~ 162 (245)
+.........+.+..+..+ +...+||.+.++.+.+.+.+.++ +++|+|++|+| ++|.|+.. +....+.+.+. ..
T Consensus 94 p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~-pl~v~iE~D~G--~~R~Gv~t~~~~~~La~~~~-~~ 169 (368)
T COG3616 94 PLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGK-PLRVLIEIDSG--LHRSGVRTPEVAEALAAEIA-AA 169 (368)
T ss_pred CCCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCC-CeeEEEEeCCC--CCccCcCChHHHHHHHHhhh-hc
Confidence 2233333333333323456 99999999999999999999998 99999999999 99999987 55566677787 89
Q ss_pred CCeeEeEeeeeCCCCC-CCc-HHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHH-HcCCCeeeeCccccCCCc
Q 025987 163 PNLEFSGLMTIGMPDY-TST-PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGSTSVRIGSTIFGPRE 238 (245)
Q Consensus 163 ~~l~l~Gl~TH~a~~~-~~~-~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~-~~~~d~VR~G~~lyG~~p 238 (245)
+.|++.|+|||.++.. ... .....+ ..+...+.. .|+. +..+|+|+|+++.... ....+++|+|.|+|.+..
T Consensus 170 ~~l~~~Gv~~y~gh~~~~~~~~~~~~~-~~a~~~~~~-~g~~--~~~vt~ggtp~~~~~~~~~~~~e~r~G~Y~~~D~~ 244 (368)
T COG3616 170 PGLRLAGVMTYPGHSYGPGSEVAAAER-VHAAALLGA-VGRA--APVLTSGGTPTAELVAGLSSTTELRAGNYVFNDLV 244 (368)
T ss_pred cceEEeeeecccccccCCcchhhhhhh-hhHHHHhcc-cCCc--cceeecCCCCchhhhccCCcceeeccCceeehhhh
Confidence 9999999999997632 111 111122 333334444 3654 4778999999988553 346799999999999865
No 32
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=99.86 E-value=1.6e-20 Score=171.26 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCC-CCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQL-PEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~-~~~i~~~~ 83 (245)
|.++|++|++.+++.+ +.++++++++|++....+ +.+.+.|+ +|.|+++.|+..+++.+ ..+. +.+
T Consensus 7 d~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~i~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~-iv~ 74 (368)
T cd06810 7 DLDIIRAHYAALKEAL----------PSGVKLFYAVKANPNPHVLRTLAEAGT-GFDVASKGELALALAAGVPPER-IIF 74 (368)
T ss_pred eHHHHHHHHHHHHHhC----------CCCCeEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCHHH-EEE
Confidence 5688999999988887 246899999999887555 77778998 99999999999999884 3332 145
Q ss_pred eccC-ChHHHHHHHccCCCcc-EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC-------------CcccCCh
Q 025987 84 VGHL-QSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE-------------SKSGIDP 148 (245)
Q Consensus 84 lG~~-~~~~~~~~~~~~~~~~-l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m-------------~R~G~~~ 148 (245)
-|+. .+++++.+++ ++ .++++||+++++.|++.+++.++ +++|+|+||+| | +|+|+.+
T Consensus 75 ~gp~~~~~~l~~~~~----~~~~~~~vds~~el~~l~~~~~~~~~-~~~v~lrin~g--~~~~~~~~~~~~~~srfGi~~ 147 (368)
T cd06810 75 TGPAKSVSEIEAALA----SGVDHIVVDSLDELERLNELAKKLGP-KARILLRVNPD--VSAGTHKISTGGLKSKFGLSL 147 (368)
T ss_pred cCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHHhCC-CCeEEEEECCC--CCCCcccCccCCCCCCcCCCH
Confidence 5775 4578888884 67 79999999999999999988887 89999999998 5 8999999
Q ss_pred hhHHHHHHHHHhcCCCeeEeEeeeeCCCC-C--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025987 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMPD-Y--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 212 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~-~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~ 212 (245)
+++.++++.+. +++ +++.||++|+++. . +...+.++++.++++.+++ .|.. ...+|+|+
T Consensus 148 ~e~~~~~~~~~-~~~-l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~-~g~~--~~~id~GG 209 (368)
T cd06810 148 SEARAALERAK-ELD-LRLVGLHFHVGSQILDLETIVQALSDARELIEELVE-MGFP--LEMLDLGG 209 (368)
T ss_pred HHHHHHHHHHH-hCC-CcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHh-cCCC--CCEEEeCC
Confidence 99999999998 888 9999999999972 2 2334566777777778877 4765 46778753
No 33
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=99.86 E-value=1.1e-20 Score=173.26 Aligned_cols=211 Identities=17% Similarity=0.169 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCC-C-CCceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQL-P-EDIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~-~-~~i~~~ 82 (245)
+.++|++|++.+++.+ +.++++++++|++....+ +.+.+.| .+|.|+++.|+...++.+ + .+| +
T Consensus 13 d~~~l~~n~~~l~~~~----------~~~~~~~yavKan~~~~v~~~l~~~g-~g~~vaS~~E~~~~~~~G~~~~~I--~ 79 (382)
T cd06839 13 DRDRVRERYAALRAAL----------PPAIEIYYSLKANPNPALVAHLRQLG-DGAEVASAGELALALEAGVPPEKI--L 79 (382)
T ss_pred eHHHHHHHHHHHHHhc----------CCCcEEEEEeccCCCHHHHHHHHHcC-CCEEEeCHHHHHHHHHcCCCHHHE--E
Confidence 5688999999988876 345899999999887665 6667766 899999999999999884 3 256 5
Q ss_pred eeccC-ChHHHHHHHccCCCcc-EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC-----CCC------CcccCChh
Q 025987 83 FVGHL-QSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-----GEE------SKSGIDPS 149 (245)
Q Consensus 83 ~lG~~-~~~~~~~~~~~~~~~~-l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG-----~~m------~R~G~~~~ 149 (245)
+.|+. .++++..+++ .+ ..++|||.++++.|.+.+++.+. +++|+|+||++ .+| +|+|++++
T Consensus 80 ~~~~~k~~~~l~~a~~----~g~~~i~vds~~el~~l~~~a~~~~~-~~~v~lRin~~~~~~~~g~~~~~~~sKfG~~~~ 154 (382)
T cd06839 80 FAGPGKSDAELRRAIE----AGIGTINVESLEELERIDALAEEHGV-VARVALRINPDFELKGSGMKMGGGPSQFGIDVE 154 (382)
T ss_pred EeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCccccCCCCCCcCCCHH
Confidence 67774 7888888883 67 78999999999999999988887 89999999962 125 89999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEeeeeCCCC-CC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHH-HcCCC
Q 025987 150 SCLGIVEHVRLRCPNLEFSGLMTIGMPD-YT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAI-EMGST 225 (245)
Q Consensus 150 e~~~~~~~i~~~~~~l~l~Gl~TH~a~~-~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~-~~~~d 225 (245)
++.++++.++ +++++++.||+.|.++. .+ ...++++++.++++++.++.|++ ...++.|++...+... ..++|
T Consensus 155 ~~~~~~~~~~-~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~idiGGG~~~~~~~~~~~~~ 231 (382)
T cd06839 155 ELPAVLARIA-ALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLP--LEFLDLGGGFGIPYFPGETPLD 231 (382)
T ss_pred HHHHHHHHHH-hCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCC--CCEEEecCccccccCCCCCCCC
Confidence 9999999998 88999999999998752 22 23456777777777776545665 3677877655433211 34568
Q ss_pred eeeeCccccCCC
Q 025987 226 SVRIGSTIFGPR 237 (245)
Q Consensus 226 ~VR~G~~lyG~~ 237 (245)
+.|+|..||+..
T Consensus 232 ~~~~~~~i~~~l 243 (382)
T cd06839 232 LEALGAALAALL 243 (382)
T ss_pred HHHHHHHHHHHH
Confidence 888888888754
No 34
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.85 E-value=1.5e-19 Score=165.18 Aligned_cols=187 Identities=21% Similarity=0.221 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCC-CC-Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQL-PE-DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~-~~-~i~~~ 82 (245)
|.++|++|++.+++.+. ..++++++++|++....+ +.+.+.| .+|.|++..|+..+++.+ .. +| +
T Consensus 9 d~~~l~~n~~~l~~~~~---------~~~~~~~yavKaN~~~~v~~~l~~~G-~g~~vaS~~E~~~~~~~G~~~~~I--~ 76 (373)
T cd06828 9 DEATIRENYRRLKEAFS---------GPGFKICYAVKANSNLAILKLLAEEG-LGADVVSGGELYRALKAGFPPERI--V 76 (373)
T ss_pred cHHHHHHHHHHHHHhhC---------CCCcEEEEEehhCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCCcccE--E
Confidence 56889999999888872 147899999999887665 7778889 899999999999999884 43 45 5
Q ss_pred eeccC-ChHHHHHHHccCCCcc-EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEe------------CCCCCCcccCCh
Q 025987 83 FVGHL-QSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEESKSGIDP 148 (245)
Q Consensus 83 ~lG~~-~~~~~~~~~~~~~~~~-l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkid------------tG~~m~R~G~~~ 148 (245)
+.|+. .+++++.+++ ++ .++++||.++++.|.+.+.+.++ +++|+|+|+ ||...+|+|+.+
T Consensus 77 ~~~p~k~~~~l~~a~~----~g~~~~~ids~~el~~l~~~a~~~~~-~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~~ 151 (373)
T cd06828 77 FTGNGKSDEELELALE----LGILRINVDSLSELERLGEIAPELGK-GAPVALRVNPGVDAGTHPYISTGGKDSKFGIPL 151 (373)
T ss_pred EeCCCCCHHHHHHHHH----cCCeEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCCCeecCCCCCCCCCCH
Confidence 66775 7788999884 56 89999999999999999998887 889988664 563349999999
Q ss_pred hhHHHHHHHHHhcCCCeeEeEeeeeCCCCC---CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025987 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 213 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s 213 (245)
+++.++++.+. .++++++.||++|+++.. +...++++++.++.+.+++ .|+.+ ..++.|+.
T Consensus 152 ~e~~~~~~~~~-~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~idiGGG 215 (373)
T cd06828 152 EQALEAYRRAK-ELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRE-LGIDL--EFLDLGGG 215 (373)
T ss_pred HHHHHHHHHHH-hCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCCC
Confidence 99999999998 889999999999999632 2345688888888888886 47653 66776543
No 35
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=99.84 E-value=4.4e-20 Score=168.23 Aligned_cols=206 Identities=16% Similarity=0.134 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|+++|++|++.+++.+ ++.++++++||+....+ +.+.+.|+ +|.|+++.|+..+|+. +..+. +++
T Consensus 8 d~~~l~~N~~~~~~~~-----------~~~~~~~avKAN~~~~v~~~l~~~G~-g~~vaS~~E~~~~~~~G~~~~~-i~~ 74 (362)
T cd00622 8 DLGDVVRKYRRWKKAL-----------PRVRPFYAVKCNPDPAVLRTLAALGA-GFDCASKGEIELVLGLGVSPER-IIF 74 (362)
T ss_pred eHHHHHHHHHHHHHHC-----------CCCeEEEEeccCCCHHHHHHHHHcCC-CeEecCHHHHHHHHHcCCCcce-EEE
Confidence 5689999999988876 35689999999987665 77788999 9999999999999998 44343 255
Q ss_pred eccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCC------cccCChhhHHHHH
Q 025987 84 VGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEES------KSGIDPSSCLGIV 155 (245)
Q Consensus 84 lG~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~------R~G~~~~e~~~~~ 155 (245)
.|+. .+++++.+++ .++ ...+||+++++.+.+.+. +. ++.|+|++|+| |+ |+|+.++++.+++
T Consensus 75 ~~~~k~~~~l~~a~~----~gi~~~~~ds~~el~~l~~~~~--~~-~v~vri~~~~~--~~~~~~~sRfGi~~~~~~~~~ 145 (362)
T cd00622 75 ANPCKSISDIRYAAE----LGVRLFTFDSEDELEKIAKHAP--GA-KLLLRIATDDS--GALCPLSRKFGADPEEARELL 145 (362)
T ss_pred cCCCCCHHHHHHHHH----cCCCEEEECCHHHHHHHHHHCC--CC-EEEEEEeeCCC--CCCCcccCCCCCCHHHHHHHH
Confidence 5655 7889999884 465 345799999999998774 34 77888999988 77 8999999899999
Q ss_pred HHHHhcCCCeeEeEeeeeCCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHH-----HHHcCCCee
Q 025987 156 EHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ-----AIEMGSTSV 227 (245)
Q Consensus 156 ~~i~~~~~~l~l~Gl~TH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~-----~~~~~~d~V 227 (245)
+.+. + .++++.||++|+++.. + ...++++++.++++.+++ .|.. +..++.|+....+. ..+..++++
T Consensus 146 ~~~~-~-~~~~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~~~~--~~~id~GGG~~~~y~~~~~~~~~~~~~i 220 (362)
T cd00622 146 RRAK-E-LGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAE-LGFK--LKLLDIGGGFPGSYDGVVPSFEEIAAVI 220 (362)
T ss_pred HHHH-H-cCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCC--cCEEEeCCCcCcccCCCCCCHHHHHHHH
Confidence 9988 6 5899999999999732 2 345677788888888876 4654 35566553332221 112345778
Q ss_pred eeCccccCCCc
Q 025987 228 RIGSTIFGPRE 238 (245)
Q Consensus 228 R~G~~lyG~~p 238 (245)
|.++..|+..+
T Consensus 221 ~~~~~~~~~~~ 231 (362)
T cd00622 221 NRALDEYFPDE 231 (362)
T ss_pred HHHHHHhCCcC
Confidence 88888887654
No 36
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=99.84 E-value=6.6e-19 Score=163.93 Aligned_cols=190 Identities=13% Similarity=0.065 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCC-ceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~-i~~~ 82 (245)
|+++|++|++.+++.+... +.+++++.++|++....+ +.+.+.|+ +|.|+++.|+...++. ++.+ | +
T Consensus 16 d~~~l~~N~~~l~~~~~~~-------~~~~~~~yavKaN~~~~il~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~ 85 (423)
T cd06842 16 FPQTFRENIAALRAVLDRH-------GVDGRVYFARKANKSLALVRAAAAAGI-GVDVASLAELRQALAAGVRGDRI--V 85 (423)
T ss_pred cHHHHHHHHHHHHHHHHHh-------CCCeEEEEEeccCCCHHHHHHHHHcCC-CEEECCHHHHHHHHHCCCCCCeE--E
Confidence 5689999999998887531 346789999999998665 77889998 9999999999999888 4433 6 6
Q ss_pred eeccCCh-HHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHh-cCCCCceEEEEEeCCC--CCCcccCChhhHHHHHHHH
Q 025987 83 FVGHLQS-NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSN-LGRKPLKVLVQVNTSG--EESKSGIDPSSCLGIVEHV 158 (245)
Q Consensus 83 ~lG~~~~-~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~-~~~~~~~V~lkidtG~--~m~R~G~~~~e~~~~~~~i 158 (245)
+.|+..+ +.++.+++ .++.+.+||.++++.|.+.+++ .+. +++|+|+||+|. +|+|+|++++++.++++.+
T Consensus 86 ~~g~~k~~~~i~~a~~----~gi~i~vDs~~el~~l~~~a~~~~~~-~~~v~lRIn~~~~~~~sRfGi~~~e~~~~~~~i 160 (423)
T cd06842 86 ATGPAKTDEFLWLAVR----HGATIAVDSLDELDRLLALARGYTTG-PARVLLRLSPFPASLPSRFGMPAAEVRTALERL 160 (423)
T ss_pred EECCCCCHHHHHHHHh----CCCEEEECCHHHHHHHHHHHHhcCCC-CCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 6788866 44777773 6788999999999999999987 777 899999999974 4799999888899999999
Q ss_pred HhcC-CCeeEeEeeeeCCCC-CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025987 159 RLRC-PNLEFSGLMTIGMPD-YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 214 (245)
Q Consensus 159 ~~~~-~~l~l~Gl~TH~a~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~ 214 (245)
+ ++ +++++.||++|+++. .+...+.++.+.++++.+++ .|+. +..++.|+..
T Consensus 161 ~-~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~l~~-~g~~--~~~idiGGG~ 214 (423)
T cd06842 161 A-QLRERVRLVGFHFHLDGYSAAQRVAALQECLPLIDRARA-LGLA--PRFIDIGGGF 214 (423)
T ss_pred H-hcCCCCeEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh-cCCC--CCEEEeCCCc
Confidence 8 88 899999999999973 22223455666666777766 4765 4778866543
No 37
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=99.83 E-value=9.1e-19 Score=160.59 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCC-CCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLP-EDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~-~~i~~~~ 83 (245)
|.++|++|++.+++.+ ++++++++++|+++...+ +.+.+ +..+|.|+++.|+..+++... .+| ++
T Consensus 8 d~~~l~~N~~~l~~~~----------~~~~~i~yavKaN~~~~vl~~l~~-~g~g~dvaS~~E~~~~~~~~~~~~I--~~ 74 (377)
T cd06843 8 DLAALRAHARALRASL----------PPGCELFYAIKANSDPPILRALAP-HVDGFEVASGGEIAHVRAAVPDAPL--IF 74 (377)
T ss_pred cHHHHHHHHHHHHHhc----------CCCCeEEEEeccCCCHHHHHHHHH-cCCcEEEeCHHHHHHHHhcCCCCeE--EE
Confidence 6789999999998877 346789999999987665 65544 668999999999999988743 346 56
Q ss_pred ecc-CChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC--------CCC----cccCChh
Q 025987 84 VGH-LQSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG--------EES----KSGIDPS 149 (245)
Q Consensus 84 lG~-~~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~--------~m~----R~G~~~~ 149 (245)
.|+ ..+++++.+++ +++ ..+|||.++++.|.+.+.+.++ +++|+|+||+|. +|+ |+|++++
T Consensus 75 ~gp~k~~~~l~~a~~----~gi~~i~vds~~el~~l~~~a~~~~~-~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~ 149 (377)
T cd06843 75 GGPGKTDSELAQALA----QGVERIHVESELELRRLNAVARRAGR-TAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEA 149 (377)
T ss_pred eCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHHcCC-CceEEEEECCCCCCCCCcceecCCCCCCCCcCHH
Confidence 676 45677788873 566 4579999999999999988887 899999999962 143 9999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEeeeeCCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 150 SCLGIVEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 150 e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
++.++++.++ +++++++.||++|+++.. + ...+.++...++..++.++.|++ ...+..|
T Consensus 150 ~~~~~~~~~~-~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~idiG 211 (377)
T cd06843 150 DLPDALELLR-DLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLD--LDVVNVG 211 (377)
T ss_pred HHHHHHHHHH-hCCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCCC--CcEEEec
Confidence 9999999998 899999999999999632 1 12233444334444444434654 3666655
No 38
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=99.82 E-value=5.5e-19 Score=163.05 Aligned_cols=206 Identities=14% Similarity=0.134 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCC-Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-~i~~~ 82 (245)
|.++|++|++.+++.+ +.+++++.++|++....+ +.+.+ +..+|.|+++.|+...++. ++. +| +
T Consensus 31 d~~~l~~n~~~l~~~~----------~~~~~i~yavKaN~~~~vl~~l~~-~g~g~dvaS~~E~~~~~~~G~~~~~I--~ 97 (398)
T TIGR03099 31 DRGLVSERVAALRKAL----------PEELAIHYAVKANPMPALLAHMAP-LVDGFDVASAGELAVALDTGYDPGCI--S 97 (398)
T ss_pred eHHHHHHHHHHHHHhc----------cccCcEEEEeccCCCHHHHHHHHH-cCCcEEEeCHHHHHHHHHcCCChhHE--E
Confidence 5688899999888877 345789999999887555 55554 6789999999999999988 444 36 6
Q ss_pred eeccC-ChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC-----CC------CcccCChhh
Q 025987 83 FVGHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-----EE------SKSGIDPSS 150 (245)
Q Consensus 83 ~lG~~-~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~-----~m------~R~G~~~~e 150 (245)
+.|+. .+++++.+++ +++.++|||+++++.|.+.+++.+. +++|+|+||++. +| +|+|+++++
T Consensus 98 ~~gp~k~~~~l~~a~~----~gv~i~vDs~~el~~l~~~a~~~~~-~~~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e 172 (398)
T TIGR03099 98 FAGPGKTDAELRRALA----AGVLINVESLRELNRLAALSEALGL-RARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQ 172 (398)
T ss_pred EeCCCCCHHHHHHHHh----CCCEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCCCCcccccCCCCCcCCCCHHH
Confidence 77884 6788888883 7889999999999999999988887 899999999631 25 999999989
Q ss_pred HHHHHHHHHhcCCCeeEeEeeeeCCCCC-C---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHH-cCCC
Q 025987 151 CLGIVEHVRLRCPNLEFSGLMTIGMPDY-T---STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MGST 225 (245)
Q Consensus 151 ~~~~~~~i~~~~~~l~l~Gl~TH~a~~~-~---~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~-~~~d 225 (245)
+.++++.++ ++ +|++.|+..|.+++. + ..+.+.+.+..+.+..++ .|+.+ ..++.|++...+.... ..+|
T Consensus 173 ~~~~~~~~~-~~-~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~--~~idiGGG~~v~~~~~~~~~~ 247 (398)
T TIGR03099 173 VPAALAFIK-AA-DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAES-APAPV--RVINIGGGFGIPYFPGNPPLD 247 (398)
T ss_pred HHHHHHHHH-hC-CCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHH-hCCCC--CEEEeCCcccCCCCCCCCCCC
Confidence 999999998 77 899999976665532 2 122233334444444444 47654 4566664433221111 2568
Q ss_pred eeeeCcccc
Q 025987 226 SVRIGSTIF 234 (245)
Q Consensus 226 ~VR~G~~ly 234 (245)
+.|+|..||
T Consensus 248 ~~~~~~~l~ 256 (398)
T TIGR03099 248 LAPVGAALA 256 (398)
T ss_pred HHHHHHHHH
Confidence 888888876
No 39
>PLN02537 diaminopimelate decarboxylase
Probab=99.82 E-value=2.6e-18 Score=159.27 Aligned_cols=186 Identities=13% Similarity=0.077 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.+++.+. ..++++++++|++....+ +.+.+.|+..++++..++...+ +. ++.+. +.+
T Consensus 24 d~~~l~~N~~~~~~~~~---------~~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~~al-~~G~~~~~-ii~ 92 (410)
T PLN02537 24 SKPQITRNYEAYKEALE---------GLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLAL-RAGFDPTR-CIF 92 (410)
T ss_pred eHHHHHHHHHHHHHHhc---------cCCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHHHHH-HcCCCcce-EEE
Confidence 56889999999888773 135679999999998665 7788999999999887666665 44 55553 134
Q ss_pred ecc-CChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC----------CCC--CcccCChhh
Q 025987 84 VGH-LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS----------GEE--SKSGIDPSS 150 (245)
Q Consensus 84 lG~-~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG----------~~m--~R~G~~~~e 150 (245)
.|+ ..+++++.+++ +++.+++||.++++.|.+.+++.++ +++|+|+||.| ++| +|+|+.+++
T Consensus 93 ~g~~k~~~~l~~a~~----~gv~i~ids~~el~~l~~~a~~~~~-~~~v~lRvnp~~~~~~~~~i~tG~~~sRfGi~~~~ 167 (410)
T PLN02537 93 NGNGKLLEDLVLAAQ----EGVFVNVDSEFDLENIVEAARIAGK-KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK 167 (410)
T ss_pred ECCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCccccCCCCCCCCCCHHH
Confidence 444 46778888873 6888999999999999999988887 89999999832 237 999999988
Q ss_pred HHHHHHHHHhcCC-CeeEeEeeeeCCCCC---CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 151 CLGIVEHVRLRCP-NLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 151 ~~~~~~~i~~~~~-~l~l~Gl~TH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
+.++++.++ +++ +|++.|+++|+++.. +...+.++...++.+.+++ .|+.+ ..++.|
T Consensus 168 ~~~~~~~~~-~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~--~~idiG 228 (410)
T PLN02537 168 LQWFLDAVK-AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRA-QGFEL--SYLNIG 228 (410)
T ss_pred HHHHHHHHH-hCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHH-cCCCc--cEEEcC
Confidence 999999998 888 899999999999731 1223445566777777777 47653 666655
No 40
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=99.81 E-value=3.2e-18 Score=158.84 Aligned_cols=187 Identities=20% Similarity=0.201 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCC-Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-~i~~~ 82 (245)
|.++|++|++.+++.+. ..++++++++|++....+ +.+.+.|+ +|.|+++.|+..+++. ++. +| .
T Consensus 31 d~~~l~~n~~~l~~~~~---------~~~~~i~yavKaN~~~~vl~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~ 98 (417)
T TIGR01048 31 DEETIRERFRAYKEAFG---------GAYSLVCYAVKANSNLALLRLLAELGS-GFDVVSGGELYRALAAGFPPEKI--V 98 (417)
T ss_pred eHHHHHHHHHHHHHhhC---------CCCceEEEEehhCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCcceE--E
Confidence 56888888888888772 125899999999887665 77888996 9999999999999987 443 34 5
Q ss_pred eecc-CChHHHHHHHccCCCccEE-EeeCCHHHHHHHHHHHHhcCCCCceEEEEEeC------------CCCCCcccCCh
Q 025987 83 FVGH-LQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDP 148 (245)
Q Consensus 83 ~lG~-~~~~~~~~~~~~~~~~~l~-~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidt------------G~~m~R~G~~~ 148 (245)
+.|+ ..+++++.+++ +++. +++||.++++.|.+.+.+.++ +++|.|+||. |...+|+|+.+
T Consensus 99 ~~gp~k~~~~l~~a~~----~gi~~i~iDs~~el~~l~~~a~~~~~-~~~v~lRIn~~~~~~~~~~~~~g~~~srfGi~~ 173 (417)
T TIGR01048 99 FNGNGKSRAELERALE----LGIRCINVDSESELELLNEIAPELGK-KARVSLRVNPGVDAKTHPYISTGLEDSKFGIDV 173 (417)
T ss_pred EeCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCCeecCCCCCCCCCCH
Confidence 5576 47888998884 6886 999999999999999988887 8899888873 43339999999
Q ss_pred hhHHHHHHHHHhcCCCeeEeEeeeeCCCC-C--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025987 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMPD-Y--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 213 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~-~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s 213 (245)
+++.++++.+. +++++++.||++|+++. . +...+.++.+.++++.+++ .|.. ...+++|+.
T Consensus 174 ~~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~-~g~~--l~~idiGGG 237 (417)
T TIGR01048 174 EEALEAYLYAL-QLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKA-EGID--LEFLDLGGG 237 (417)
T ss_pred HHHHHHHHHHH-hCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHh-cCCC--ccEEEeCCc
Confidence 98999999998 89999999999999962 2 2334567778888888876 4654 467887754
No 41
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=99.79 E-value=2e-17 Score=151.82 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHH-HHHHHHcCCCeeecccHHHHHHhhcC-CCCC-ceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~-i~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~-i~~~ 82 (245)
|.++|++|++.+++.+.+. ..+++++.++|+..... ++.+.+.|+..+ |++..|+...++. +..+ | .
T Consensus 13 d~~~l~~n~~~l~~~~~~~-------~~~~~i~yavKaN~~~~vl~~l~~~g~~~d-vaS~~E~~~~~~~G~~~~~I--i 82 (379)
T cd06841 13 DEDALRENYRELLGAFKKR-------YPNVVIAYSYKTNYLPAICKILHEEGGYAE-VVSAMEYELALKLGVPGKRI--I 82 (379)
T ss_pred eHHHHHHHHHHHHHHHhhc-------CCCeEEEEEehhcccHHHHHHHHHcCCeEE-EeCHHHHHHHHHcCCChHHE--E
Confidence 5688999999998877421 13578999999977645 477788999888 7889999999988 4333 4 5
Q ss_pred eeccC-ChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC---CCcccCChhhHHHHHHHH
Q 025987 83 FVGHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE---ESKSGIDPSSCLGIVEHV 158 (245)
Q Consensus 83 ~lG~~-~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~---m~R~G~~~~e~~~~~~~i 158 (245)
+.|+. .+++++.+++ ++++++|||+++++.|.+.+.+.++ +++|+|+||++.+ |+|+|++++++.++++.+
T Consensus 83 ~~g~~k~~~~l~~a~~----~g~~i~ids~~el~~l~~~~~~~~~-~~~v~lRv~~~~g~~~~~rfGi~~~e~~~~~~~~ 157 (379)
T cd06841 83 FNGPYKSKEELEKALE----EGALINIDSFDELERILEIAKELGR-VAKVGIRLNMNYGNNVWSRFGFDIEENGEALAAL 157 (379)
T ss_pred EECCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHhcCC-cceEEEEECCCCCCCCCCCCCCchhhhHHHHHHH
Confidence 56876 4588888884 6789999999999999999988887 8999999999766 999999987775555544
Q ss_pred Hh--cCCCeeEeEeeeeCCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 159 RL--RCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 159 ~~--~~~~l~l~Gl~TH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
.+ +++++++.|+++|+++.. + ...++++++.++.+++ .|.+. ..+..|
T Consensus 158 ~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~---~g~~~--~~idiG 210 (379)
T cd06841 158 KKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL---FGLEL--EYLDLG 210 (379)
T ss_pred HHhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh---cCCCC--CEEEeC
Confidence 40 458999999999999732 2 2234455555555544 15442 455543
No 42
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=99.45 E-value=7.8e-12 Score=116.49 Aligned_cols=177 Identities=15% Similarity=0.116 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCC-----C
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-----D 78 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-----~ 78 (245)
|++.|++|++.+++ + + +++..+|+|....+ +.+.+.|+ +|-|++..|+...++. ... +
T Consensus 32 d~~~l~~n~~~l~~-~----------~---~i~yavKan~~~~il~~~~~~G~-g~dvaS~~E~~~a~~~G~~~~~~~~~ 96 (420)
T PRK11165 32 DADIIRRRIAQLRQ-F----------D---VIRFAQKACSNIHILRLMREQGV-KVDAVSLGEIERALAAGYKPGTEPDE 96 (420)
T ss_pred cHHHHHHHHHHHhc-c----------C---cceEEehhCCCHHHHHHHHHcCC-CEEEeCHHHHHHHHHcCCCCCCCCCe
Confidence 45666777666653 2 2 58899999998665 77889998 8999999999988877 332 3
Q ss_pred ceeeeeccC-ChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC------------CCCccc
Q 025987 79 IKWHFVGHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------------EESKSG 145 (245)
Q Consensus 79 i~~~~lG~~-~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~------------~m~R~G 145 (245)
| .+-|+. .+++++.+++ .+++.++||.+.++.|++.+. ..+|.|.||.|. .-+|+|
T Consensus 97 I--i~~gp~k~~~~l~~a~~----~gv~i~vDs~~el~~i~~~~~-----~~~v~lRvn~~~~~~~~~~~~~~~~~sKFG 165 (420)
T PRK11165 97 I--VFTADVIDRATLARVVE----LKIPVNAGSIDMLDQLGQVSP-----GHRVWLRINPGFGHGHSQKTNTGGENSKHG 165 (420)
T ss_pred E--EEeCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcC-----CCcEEEEECCCCCCCCCCceecCCCCCCCC
Confidence 5 566777 5788898884 678889999999999998864 357888998762 235699
Q ss_pred CChhhHHHHHHHHHhcCCCeeEeEeeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025987 146 IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 214 (245)
Q Consensus 146 ~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~ 214 (245)
+.++++..+++.++ . ++|++.||.+|.++.-++ ....+....+.+.+++ .|.. +..++.|++.
T Consensus 166 i~~~~~~~~~~~~~-~-~~l~l~GlH~H~GS~~~~-~~~~~~~~~l~~~~~~-~g~~--~~~IdiGGGf 228 (420)
T PRK11165 166 IWHEDLPAALAVIQ-R-YGLKLVGIHMHIGSGVDY-GHLEQVCGAMVRQVIE-LGQD--IEAISAGGGL 228 (420)
T ss_pred CCHHHHHHHHHHHH-h-CCCcEEEEEEeccCCCCh-HHHHHHHHHHHHHHHH-hCCC--CcEEEeCCCc
Confidence 98888888777776 4 589999999999863221 1122223444445555 4654 3667766544
No 43
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=99.29 E-value=3.6e-10 Score=104.29 Aligned_cols=185 Identities=21% Similarity=0.224 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCC--Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPE--DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~--~i~~~ 82 (245)
|++.|++|++.+++... ..+.+++-.+||-....+ +.+.+.| .+|-|+++-|...-.+++-. .| +
T Consensus 33 d~~~l~~~~~~~~~a~~---------~~~~~i~yAvKAn~~~~il~~l~~~g-~g~Dv~S~gEl~~al~aG~~~~~I--~ 100 (394)
T COG0019 33 DEATLRRNARELKSAFP---------GSGAKVFYAVKANSNPAILRLLAEEG-SGFDVASLGELELALAAGFPPERI--V 100 (394)
T ss_pred cHHHHHHHHHHHHHHhc---------cCCceEEEEEcCCCCHHHHHHHHHhC-CCceecCHHHHHHHHHcCCChhhE--E
Confidence 67889999999888874 125799999999877665 6555654 56778999999887777333 36 5
Q ss_pred eeccCC-hHHHHHHHccCCCccEE-EeeCCHHHHHHHHHHHHhcCCCCceEEEEEe------------CCCCCCcccCCh
Q 025987 83 FVGHLQ-SNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEESKSGIDP 148 (245)
Q Consensus 83 ~lG~~~-~~~~~~~~~~~~~~~l~-~~v~s~~~a~~l~~~a~~~~~~~~~V~lkid------------tG~~m~R~G~~~ 148 (245)
+-|+.. .+++..+++ .++. ++++|.++++.|++.+.+. +.+|.+.|| ||..++|+|+.+
T Consensus 101 f~g~~ks~~ei~~a~e----~gi~~i~vdS~~El~~l~~~a~~~---~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~ 173 (394)
T COG0019 101 FSGPAKSEEEIAFALE----LGIKLINVDSEEELERLSAIAPGL---VARVSLRINPGVSAGTHEYIATGGKSSKFGISP 173 (394)
T ss_pred ECCCCCCHHHHHHHHH----cCCcEEEeCCHHHHHHHHHhcccc---CceEEEEECCCCCCccCccccCCccccccCCCH
Confidence 666554 577888884 5665 9999999999999998743 467777777 556679999999
Q ss_pred hhHHHHHHHHHhcCCCeeEeEeeeeCCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025987 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 212 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~---~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~ 212 (245)
+++.++++... +.+++++.||..|-++. .+.....++++.+++.++.+..|+.. .+++.|.
T Consensus 174 ~~a~~~~~~~~-~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l--~~inlGG 237 (394)
T COG0019 174 EEALDVLERAA-KLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQL--EWLNLGG 237 (394)
T ss_pred HHHHHHHHHHH-hcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCc--eEEEecC
Confidence 88888888888 89999999999999862 23344567778888888843357664 6777654
No 44
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=99.29 E-value=1.6e-09 Score=100.66 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHH-HHHHHHcCC---CeeecccHHHHHHhhcC-CCCCce
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVYDAGH---RSFGENYVQEIVDKAPQ-LPEDIK 80 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~-i~~~~~~G~---~~~~va~~~Ea~~lr~~-~~~~i~ 80 (245)
|++.|++|++.+++.+....+..+-. .++++.-.+|+..... ++.+.+.|+ .+|=|++..|.....++ ...+-
T Consensus 11 d~~~i~~~~~~l~~af~~~~~~~~~~-~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al~~G~~~~~- 88 (409)
T cd06830 11 FPDILRHRIERLNAAFAKAIEEYGYK-GKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAALALLKTPDA- 88 (409)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcC-CceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHHhcCCCCCC-
Confidence 67899999999999886443332221 2578888999977655 488888895 68999999999887776 43332
Q ss_pred eeee-ccCChHHHHHHHccCC-CccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC-----------CCCCcccCC
Q 025987 81 WHFV-GHLQSNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-----------GEESKSGID 147 (245)
Q Consensus 81 ~~~l-G~~~~~~~~~~~~~~~-~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG-----------~~m~R~G~~ 147 (245)
..+. |.-..++++.+++..+ ..++.+++||.+.++.|.+.+++.++ +.+|.|.|+.+ +.-+|+|++
T Consensus 89 ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~-~~~v~lRinp~~~~~~~~~~~~~~~sKFGi~ 167 (409)
T cd06830 89 LIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGV-KPLLGVRIKLASKGSGKWQESGGDRSKFGLT 167 (409)
T ss_pred EEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEccCCCCCcceeccCCCCCCCCCC
Confidence 1333 4345667777763100 12467899999999999999988887 88899888754 234889999
Q ss_pred hhhHHHHHHHHHhcC-CCeeEeEeeeeCCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 148 PSSCLGIVEHVRLRC-PNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 148 ~~e~~~~~~~i~~~~-~~l~l~Gl~TH~a~~---~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
++++.++++.++ +. +++++.|+-.|.++. .+...+.++.+.++++.+++ .|+.+ ..+..|
T Consensus 168 ~~~~~~~~~~~~-~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~-~g~~l--~~iDiG 231 (409)
T cd06830 168 ASEILEVVEKLK-EAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRK-LGANL--RYLDIG 231 (409)
T ss_pred HHHHHHHHHHHH-hcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH-hCCCC--cEEEcC
Confidence 999999999998 76 589999999998852 22233456667777777776 37543 566544
No 45
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=99.20 E-value=6.6e-10 Score=96.48 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHH-HHHHHHcCCCeeecccHHHHHHhhcCC-CC-Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVYDAGHRSFGENYVQEIVDKAPQL-PE-DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~-i~~~~~~G~~~~~va~~~Ea~~lr~~~-~~-~i~~~ 82 (245)
|++.+.++++.+.+... +.+++++--+|+-.... ++.+.+.| .+|=|++..|....++.. .. .| .
T Consensus 1 d~~~~~~~~~~~~~~~~---------~~~~~i~yA~KaN~~~~vl~~l~~~g-~g~dv~S~~El~~a~~~g~~~~~I--i 68 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAFL---------PYNVKIFYAVKANPNPAVLKILAEEG-CGFDVASPGELELALKAGFPPDRI--I 68 (251)
T ss_dssp EHHHHHHHHHHHHHHHT---------TT-EEEEEEGGGS--HHHHHHHHHTT-CEEEESSHHHHHHHHHTTTTGGGE--E
T ss_pred ChHHHHHHHHHHHHhcC---------CCCcEEEEEECcCCCHHHHHHHHHcC-CceEEecccchHHHHhhhccccce--e
Confidence 34445555555444441 33589999999976544 47788888 589999999998776763 33 35 5
Q ss_pred eeccCC-hHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCcccCChh
Q 025987 83 FVGHLQ-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPS 149 (245)
Q Consensus 83 ~lG~~~-~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------------~~m~R~G~~~~ 149 (245)
+-|+.. .+++..+++ .....++|||.++++.|.+.+.+. +|.|.|+.+ +..+|+|++++
T Consensus 69 ~~gp~k~~~~l~~a~~---~~~~~i~vDs~~el~~l~~~~~~~-----~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~ 140 (251)
T PF02784_consen 69 FTGPGKSDEELEEAIE---NGVATINVDSLEELERLAELAPEA-----RVGLRINPGIGAGSHPKISTGGKDSKFGIDIE 140 (251)
T ss_dssp EECSS--HHHHHHHHH---HTESEEEESSHHHHHHHHHHHCTH-----EEEEEBE-SESTTTSCHHCSSSHTSSSSBEGG
T ss_pred EecCcccHHHHHHHHh---CCceEEEeCCHHHHHHHhccCCCc-----eeeEEEeeccccccccccCCCCCCCcCCcChH
Confidence 667764 567777773 123468999999999999988643 566666543 33479999998
Q ss_pred h-HHHHHHHHHhcCCCeeEeEeeeeCCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 150 S-CLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 150 e-~~~~~~~i~~~~~~l~l~Gl~TH~a~~---~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
+ +.++++.++ +.+ +++.||..|.++. .+...+.++.+.++++.+.+++|++. ...+..|
T Consensus 141 ~~~~~~l~~~~-~~~-l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-l~~idiG 203 (251)
T PF02784_consen 141 EEAEEALERAK-ELG-LRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFED-LEFIDIG 203 (251)
T ss_dssp GHHHHHHHHHH-HTT-EEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT--SEEEEE
T ss_pred HHHHHHHHhhc-cce-EEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhcccccccc-ccEEEee
Confidence 8 999999998 888 9999999998752 22223456667777777875467651 3667654
No 46
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=99.18 E-value=4.7e-09 Score=96.61 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCC-ceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~-i~~~ 82 (245)
|++.|++|++.+++.+ +.++++.--+|+.....+ +.+.+.|+ +|=|++..|.....+. .+.+ | .
T Consensus 9 d~~~l~~~~~~l~~a~----------~~~~~~~yAvKaN~~~~il~~l~~~G~-g~DvaS~~El~~al~~G~~~~~I--i 75 (379)
T cd06836 9 DLDGFRALVARLTAAF----------PAPVLHTFAVKANPLVPVLRLLAEAGA-GAEVASPGELELALAAGFPPERI--V 75 (379)
T ss_pred cHHHHHHHHHHHHHhc----------CCCcEEEEEEecCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCChhhE--E
Confidence 6788888988888877 235788888999876554 77778886 7889999999887776 4333 5 5
Q ss_pred eeccCC-hHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHh-cCCCCceEEEEEeCC------------CCCCcccCCh
Q 025987 83 FVGHLQ-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSN-LGRKPLKVLVQVNTS------------GEESKSGIDP 148 (245)
Q Consensus 83 ~lG~~~-~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~-~~~~~~~V~lkidtG------------~~m~R~G~~~ 148 (245)
+-|+.. .++++.+++ +++.+++||++.++.|.+.+.+ .+. +.+|.|.||.+ ...+|+|+++
T Consensus 76 ~~gp~K~~~~L~~ai~----~gv~i~iDS~~El~~i~~~a~~~~~~-~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~~ 150 (379)
T cd06836 76 FDSPAKTRAELREALE----LGVAINIDNFQELERIDALVAEFKEA-SSRIGLRVNPQVGAGKIGALSTATATSKFGVAL 150 (379)
T ss_pred EeCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCccccccCCCCCCCCcCc
Confidence 557765 477777774 6778899999999999999877 666 78899998743 3458999998
Q ss_pred h--hHHHHHHHHHhcCCCeeEeEeeeeCCCC-C--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 149 S--SCLGIVEHVRLRCPNLEFSGLMTIGMPD-Y--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 149 ~--e~~~~~~~i~~~~~~l~l~Gl~TH~a~~-~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
+ ++.++++.+. ..++ +.||-.|.++. . +...+.++.+.++.+.+++.+|.. ....+..|
T Consensus 151 ~~~~~~~~~~~~~-~~~~--l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~~~~IDiG 214 (379)
T cd06836 151 EDGARDEIIDAFA-RRPW--LNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRR-QITRIDIG 214 (379)
T ss_pred chhHHHHHHHHHh-cCCC--eEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeC
Confidence 7 4666666655 4454 67999999852 1 122234445555566666533421 13556654
No 47
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=99.08 E-value=1.1e-08 Score=94.71 Aligned_cols=178 Identities=14% Similarity=0.165 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHH-HHHHHHcCCCeeecccHHHHHHhhcC-CCC-Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~-i~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-~i~~~ 82 (245)
|.+.|++|++.+++.+ +.+++.-.+|+..... ++.+.+.|+ +|=|++..|....++. ... .| .
T Consensus 19 d~~~i~~~~~~l~~~l-----------p~~~~~YAvKaN~~~~il~~l~~~G~-g~DvaS~gEl~~al~~G~~~~~I--i 84 (394)
T cd06831 19 DLGKIVKKHSQWQTVM-----------AQIKPFYTVRCNSTPAVLEILAALGT-GFACSSKNEMALVQELGVSPENI--I 84 (394)
T ss_pred EHHHHHHHHHHHHHHC-----------CCCeEEeeeccCCCHHHHHHHHHcCC-CeEeCCHHHHHHHHhcCCCcCCE--E
Confidence 5678888888888877 3678888999977655 477778885 7889999999877766 333 36 5
Q ss_pred eeccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC----CC--CCcccCChhhHHHH
Q 025987 83 FVGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS----GE--ESKSGIDPSSCLGI 154 (245)
Q Consensus 83 ~lG~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG----~~--m~R~G~~~~e~~~~ 154 (245)
+-|+. ..++++.+++ .++ +.++||++.++.|.+.+. ..+|.|.|+.+ ++ .+|+|++++++.++
T Consensus 85 f~gp~K~~~~l~~a~~----~Gv~~i~vDS~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~KFGi~~~~~~~~ 155 (394)
T cd06831 85 YTNPCKQASQIKYAAK----VGVNIMTCDNEIELKKIARNHP-----NAKLLLHIATEDNIGGEEMNMKFGTTLKNCRHL 155 (394)
T ss_pred EeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHhCC-----CCcEEEEEeccCCCCCCccCCCCCCCHHHHHHH
Confidence 66776 4677787773 677 579999999999987653 34555565532 21 26999999999999
Q ss_pred HHHHHhcCCCeeEeEeeeeCCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 155 VEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 155 ~~~i~~~~~~l~l~Gl~TH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
++.++ .. ++++.||-.|.++.- + .....++....+++.+++ .|++. ..+..|
T Consensus 156 l~~~~-~~-~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~-~g~~l--~~ldiG 210 (394)
T cd06831 156 LECAK-EL-DVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEE-FGFKM--NMLDIG 210 (394)
T ss_pred HHHHH-HC-CCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCC--CEEEeC
Confidence 99988 65 799999999988522 1 111223333445555555 46653 566644
No 48
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=99.00 E-value=1.6e-07 Score=91.30 Aligned_cols=200 Identities=15% Similarity=0.110 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccCh-HHHHHHHHcCC---CeeecccHHHHHHhhcCCC-CCce
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPV-SLIRQVYDAGH---RSFGENYVQEIVDKAPQLP-EDIK 80 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~-~~i~~~~~~G~---~~~~va~~~Ea~~lr~~~~-~~i~ 80 (245)
+++.|++|++.+++.+.++.+..+- +.+.++.--+|+-.. ..++.+.+.|. .+|=|++..|......... .+..
T Consensus 63 d~~iL~~~i~~l~~aF~~a~~~~~Y-~g~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~g~~p~~~ 141 (624)
T TIGR01273 63 FPDILQHRIRSLNDAFANAIEEYQY-AGHYQGVYPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAP 141 (624)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcc-CCCeeEEEEeccCCcHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCCCCCCE
Confidence 4678899999999988766554443 245788889999554 45688888895 5788899999887666643 3332
Q ss_pred eeeeccCChHHHHHHHccC-CCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCcccCCh
Q 025987 81 WHFVGHLQSNKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDP 148 (245)
Q Consensus 81 ~~~lG~~~~~~~~~~~~~~-~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkid-----------tG~~m~R~G~~~ 148 (245)
+..=|.-..+.+..++... ...+++++|||++.++.|.+.+++.++ +..|-|.|+ ||++-+|+|++.
T Consensus 142 Ii~NG~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~-~~~IglRvnl~~~~~g~~~~tgg~~SKFGl~~ 220 (624)
T TIGR01273 142 IVCNGYKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGV-KPKLGLRARLASKGSGKWASSGGEKSKFGLSA 220 (624)
T ss_pred EEeCCCCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCC-CceEEEEEecCCCCCCCcccCCCCCCCCCCCH
Confidence 2344765666677665210 014788999999999999999998887 777777775 445568999999
Q ss_pred hhHHHHHHHHHhcCCCee-EeEeeeeCCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 149 SSCLGIVEHVRLRCPNLE-FSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~-l~Gl~TH~a~~---~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
+++.++++.++ +.+.+. +.||-.|.++. .+.....++...+++.++++ .|.+ ...+..|
T Consensus 221 ~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~eL~~-~G~~--l~~LDIG 283 (624)
T TIGR01273 221 TQILEVVRLLE-QNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCELRK-LGAK--ITYVDVG 283 (624)
T ss_pred HHHHHHHHHHH-hcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCC--CCEEEeC
Confidence 99999999998 887764 99998888862 22334566667777777877 4754 3555544
No 49
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=98.96 E-value=1.4e-07 Score=86.98 Aligned_cols=177 Identities=12% Similarity=0.032 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|++.|++|++.+++... ..++++.-.+||.....+ +.+.+.|+ +|=|+++.|...-..+.+..+ .+.
T Consensus 9 d~~~i~~~~~~l~~~~~---------~~~~~i~YAvKAN~~~~il~~l~~~g~-G~D~aS~gEl~~al~a~~~~~--i~~ 76 (380)
T TIGR01047 9 EEEKLRKNLEILEHVQQ---------QSGAKVLLALKGFAFWGVFPILREYLD-GCTASGLWEAKLAKEEFGKEI--HVY 76 (380)
T ss_pred cHHHHHHHHHHHHHHHh---------hcCCEEEEEEcccCChHHHHHHHHHCC-cccccCHHHHHHHHHHCCCcE--EEE
Confidence 56888899988887763 246789999999776554 66767664 567899999886554555445 344
Q ss_pred ccC-ChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCcccCChhhH
Q 025987 85 GHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSC 151 (245)
Q Consensus 85 G~~-~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------------~~m~R~G~~~~e~ 151 (245)
|+. .+++++.+++ .++..++||+++++.|.+.+++.++ +.+|.|.||-+ +..+|+|++++++
T Consensus 77 ~~~k~~~el~~a~~----~g~~i~idS~~el~~l~~~a~~~~~-~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~ 151 (380)
T TIGR01047 77 SPAYSEEDVPEIIP----LADHIIFNSLAQWARYRHLVEGKNS-AVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQADHF 151 (380)
T ss_pred CCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCcccccCCCCCCCCCCCHHHH
Confidence 654 5678888884 5678999999999999999977776 78899999854 2358999998766
Q ss_pred HHHHHHHHhcCCCeeEeEeeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 152 LGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 152 ~~~~~~i~~~~~~l~l~Gl~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
.+. . .+++.||-.|.++. .+.+.+.+..+....+..+++.. ...+..|
T Consensus 152 ~~~----~----~~~i~GlH~HiGS~--~~~~~~~~~i~~~~~~~~~~~~~--~~~iDiG 199 (380)
T TIGR01047 152 EES----L----LDGINGLHFHTLCE--KDADALERTLEVIEERFGEYLPQ--MDWVNFG 199 (380)
T ss_pred hHh----H----hhcCcEEEEecCCC--CCHHHHHHHHHHHHHHHHHhhCC--CCEEEeC
Confidence 543 1 24677998898864 22334444444443443322222 3556655
No 50
>PRK05354 arginine decarboxylase; Provisional
Probab=98.94 E-value=3.4e-07 Score=89.13 Aligned_cols=200 Identities=18% Similarity=0.139 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccCh-HHHHHHHHcCC---CeeecccHHHHHHhhcCCCC-Cce
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPV-SLIRQVYDAGH---RSFGENYVQEIVDKAPQLPE-DIK 80 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~-~~i~~~~~~G~---~~~~va~~~Ea~~lr~~~~~-~i~ 80 (245)
+.+.|++|++.+++.+.++.+..+- +.+.+++--+|+-.. ..++.+.+.|. .+|=|++..|.......... ...
T Consensus 70 ~~~~L~~ri~~L~~aF~~a~~~~~y-~g~~~~~YAiKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~AL~~g~~~~~l 148 (634)
T PRK05354 70 FPDILQDRVRSLNAAFKKAIEEYGY-QGDYRGVYPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGAL 148 (634)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcc-CCCceEEEEeccCChHHHHHHHHHcCCCCceeEEECCHHHHHHHHHcCCCCCcE
Confidence 4578899999998888665544343 235678888999665 44588888996 47888999998876666433 221
Q ss_pred eeeeccCChHHHHHHHccCC-CccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCcccCCh
Q 025987 81 WHFVGHLQSNKAKTLLGGVP-NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDP 148 (245)
Q Consensus 81 ~~~lG~~~~~~~~~~~~~~~-~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkid-----------tG~~m~R~G~~~ 148 (245)
+..=|.-..+.++.++...+ ..+++++|||++.++.|.+.+++.++ +..|-|.|+ ||+.-+|+|+++
T Consensus 149 Ii~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~-~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~~ 227 (634)
T PRK05354 149 IVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGV-KPRLGVRARLASQGSGKWQSSGGEKSKFGLSA 227 (634)
T ss_pred EEcCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEEecCCCCCCCcccCCCCCCCCCCCH
Confidence 22336555566776642100 24688999999999999999998887 767777664 455568999999
Q ss_pred hhHHHHHHHHHhcCCCe-eEeEeeeeCCCC--C-CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 149 SSCLGIVEHVRLRCPNL-EFSGLMTIGMPD--Y-TSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l-~l~Gl~TH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
+++.++++.++ +.+.+ ++.||-.|.++. + ....+.++...+++..+++ .|.+ ...+..|
T Consensus 228 ~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~~~~~eL~~-~G~~--l~~LDIG 290 (634)
T PRK05354 228 TEVLEAVERLR-EAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARFYVELRK-LGAP--IQYLDVG 290 (634)
T ss_pred HHHHHHHHHHH-hCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCC--CCEEEeC
Confidence 99999999999 88877 599998888852 2 2233455666666777776 4654 3555543
No 51
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=98.91 E-value=3e-07 Score=84.36 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHH-HHHHHHcCCCeeecccHHHHHHhhcC--CCC--Cce
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVYDAGHRSFGENYVQEIVDKAPQ--LPE--DIK 80 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~-i~~~~~~G~~~~~va~~~Ea~~lr~~--~~~--~i~ 80 (245)
|.+.+++|++.++. + +...++.--+|+..... ++.+.+.|+ +|=|++..|....++. .-. .|
T Consensus 18 d~~~l~~~~~~l~~-~----------~~~~~~~yAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~I- 84 (368)
T cd06840 18 DLETVRARARQVSA-L----------KAVDSLFYAIKANPHPDVLRTLEEAGL-GFECVSIGELDLVLKLFPDLDPRRV- 84 (368)
T ss_pred cHHHHHHHHHHHHh-C----------CCCCeEEEEeccCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcccCCCcceE-
Confidence 45677777776643 3 23347888999977655 477888885 7999999999876664 222 35
Q ss_pred eeeeccCC-hHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCcccCC
Q 025987 81 WHFVGHLQ-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGID 147 (245)
Q Consensus 81 ~~~lG~~~-~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------------~~m~R~G~~ 147 (245)
.+-|+.. .++++.+++ .++..++||++.++.|.+.+. ..+|.|.|+.+ +..+|+|++
T Consensus 85 -if~gp~K~~~~l~~a~~----~gv~i~~Ds~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~ 154 (368)
T cd06840 85 -LFTPNFAARSEYEQALE----LGVNVTVDNLHPLREWPELFR-----GREVILRIDPGQGEGHHKHVRTGGPESKFGLD 154 (368)
T ss_pred -EEcCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcc-----cCCEEEEECCCCCCCCCCceecCCCCCCCCCC
Confidence 4557765 477888884 677889999999999887764 34566666653 335999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEeeeeCCC
Q 025987 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMP 176 (245)
Q Consensus 148 ~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~ 176 (245)
++++.++++.++ .. ++++.|+-.|.++
T Consensus 155 ~~~~~~~l~~~~-~~-~l~l~GlhfH~GS 181 (368)
T cd06840 155 VDELDEARDLAK-KA-GIIVIGLHAHSGS 181 (368)
T ss_pred HHHHHHHHHHHH-hC-CCcEEEEEEECCC
Confidence 999999998887 55 7999999889986
No 52
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=98.84 E-value=2.5e-07 Score=93.52 Aligned_cols=177 Identities=15% Similarity=0.157 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC--CCC--Cce
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ--LPE--DIK 80 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~--~~~--~i~ 80 (245)
|++.|++|++.+++.. ...+++-.+|+.....+ +.+.+.|+ +|=|++..|.....+. .-. .|
T Consensus 509 d~~~i~~n~~~l~~~~-----------~~~~i~yAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~I- 575 (861)
T PRK08961 509 HLPTVRARARALAALA-----------AVDQRFYAIKANPHPAILRTLEEEGF-GFECVSIGELRRVFELFPELSPERV- 575 (861)
T ss_pred EHHHHHHHHHHHHhcC-----------CCCcEEEEeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHhcCCCCCCeE-
Confidence 5677777777776522 34578999999887554 78889998 8999999999876664 222 24
Q ss_pred eeeeccCC-hHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCcccCC
Q 025987 81 WHFVGHLQ-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGID 147 (245)
Q Consensus 81 ~~~lG~~~-~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------------~~m~R~G~~ 147 (245)
.+-|+.. .+++..+++ .++..++||++.++.|.+.+.. .+|.|.|+.+ +..+|+|++
T Consensus 576 -i~~gp~K~~~~l~~A~~----~gv~i~vDS~~EL~~i~~~~~~-----~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~ 645 (861)
T PRK08961 576 -LFTPNFAPRAEYEAAFA----LGVTVTLDNVEPLRNWPELFRG-----REVWLRIDPGHGDGHHEKVRTGGKESKFGLS 645 (861)
T ss_pred -EECCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhCCC-----CcEEEEECCCCCCCCCcccccCCCCCCCCCC
Confidence 4446654 578888873 6778899999999999987642 2455566543 335899999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEeeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 148 ~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
++++.++++.+. . .++++.|+..|.++... +.+.+....+....+.+. .. ....+..|
T Consensus 646 ~~~~~~~~~~~~-~-~~l~l~GlH~H~GS~~~-~~~~~~~~~~~~~~l~~~-~~--~~~~iDiG 703 (861)
T PRK08961 646 QTRIDEFVDLAK-T-LGITVVGLHAHLGSGIE-TGEHWRRMADELASFARR-FP--DVRTIDLG 703 (861)
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEEEecCCCCC-CHHHHHHHHHHHHHHHHh-cc--CCcEEEec
Confidence 999999999887 5 58999999999986211 122344444444444443 22 23556654
No 53
>PLN02439 arginine decarboxylase
Probab=98.77 E-value=3.4e-06 Score=81.17 Aligned_cols=197 Identities=16% Similarity=0.123 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccCh-HHHHHHHHcCC---CeeecccHHHHHHhhcCC-CC-C-c
Q 025987 7 EGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPV-SLIRQVYDAGH---RSFGENYVQEIVDKAPQL-PE-D-I 79 (245)
Q Consensus 7 ~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~-~~i~~~~~~G~---~~~~va~~~Ea~~lr~~~-~~-~-i 79 (245)
.+.|++|++.+++....+.+..+- ..+.+++--+|+... ..++.+.+.|. .++=+++..|........ .. + .
T Consensus 6 ~d~l~~ri~~L~~aF~~ai~~~~y-~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~~~~ 84 (559)
T PLN02439 6 PDVLKNRLESLQSAFDYAIQSQGY-NSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSPDA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-CCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCCCCe
Confidence 367889999998877654333232 235678888899554 55688888885 357788899988765543 22 2 2
Q ss_pred eeeee-ccCChHHHHHHHcc-CCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCcccC
Q 025987 80 KWHFV-GHLQSNKAKTLLGG-VPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGI 146 (245)
Q Consensus 80 ~~~~l-G~~~~~~~~~~~~~-~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkid-----------tG~~m~R~G~ 146 (245)
. .+- |.-..+.++.++.. .-..++++++||++.++.|.+.+++.++ +..|-|.|+ ||++-+|+|+
T Consensus 85 i-i~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~-~p~IglRi~~~~~~~~~~~~tgg~~sKFGl 162 (559)
T PLN02439 85 F-LICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGV-RPVIGVRAKLRTKHSGHFGSTSGEKGKFGL 162 (559)
T ss_pred E-EECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCC-CceEEEEEecCCCCCCCccccCCCCCCCCC
Confidence 1 222 54455556654310 0014568899999999999999988886 656665653 5556789999
Q ss_pred ChhhHHHHHHHHHhcCCCee-EeEeeeeCCCC--C-CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeec
Q 025987 147 DPSSCLGIVEHVRLRCPNLE-FSGLMTIGMPD--Y-TSTPENFRTLLNCRAEVCKALGMAEDQCELSM 210 (245)
Q Consensus 147 ~~~e~~~~~~~i~~~~~~l~-l~Gl~TH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~ 210 (245)
+++++.++++.++ +.+.+. +.||-.|.++. + ......++...+++.++++ .|.+. ..+..
T Consensus 163 ~~~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~-~G~~l--~~lDI 226 (559)
T PLN02439 163 TATEIVRVVRKLR-KEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVR-LGAPM--RVIDI 226 (559)
T ss_pred CHHHHHHHHHHHH-hCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--cEEEe
Confidence 9999999999999 888887 99998888752 2 2334456666777777876 47543 45543
No 54
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=98.66 E-value=3.7e-06 Score=76.55 Aligned_cols=144 Identities=9% Similarity=0.015 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|.+.|++|++.+++... .+++++.-.+|+.....+ +.+.+.|+ +|=|++..|...-+......+ .+.
T Consensus 7 d~~~i~~~~~~~~~~~~---------~~~~~i~YAvKaN~~~~il~~l~~~G~-g~DvaS~~El~~a~~~~~~~~--i~~ 74 (346)
T cd06829 7 DEAKLRRNLEILKRVQE---------RSGAKILLALKAFSMWSVFPLIREYLD-GTTASSLFEARLGREEFGGEV--HTY 74 (346)
T ss_pred eHHHHHHHHHHHHHHHh---------ccCCEEEEEEhhcCCHHHHHHHHHhCC-ccEecCHHHHHHHHHHCCCce--EEE
Confidence 56788888888877552 246789889999776554 77778884 788999999887655533343 334
Q ss_pred ccCC-hHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCcccCChhhH
Q 025987 85 GHLQ-SNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSC 151 (245)
Q Consensus 85 G~~~-~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------------~~m~R~G~~~~e~ 151 (245)
|+.. .+++..+++ .....++||++.++.|.+.+.+ + +.+|.|.|+.+ +..+|+|++++++
T Consensus 75 ~~~k~~~el~~a~~----~~~~~~~Ds~~EL~~l~~~~~~--~-~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~~~~~ 147 (346)
T cd06829 75 SPAYRDDEIDEILR----LADHIIFNSLSQLERFKDRAKA--A-GISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDEL 147 (346)
T ss_pred CCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHhc--c-CCeEEEEECCCCCCCCCceecCCCCCCCCCCChHHh
Confidence 6544 566777773 4568899999999999998875 4 66888888753 2358999988754
Q ss_pred HHHHHHHHhcCCCeeEeEeeeeCCC
Q 025987 152 LGIVEHVRLRCPNLEFSGLMTIGMP 176 (245)
Q Consensus 152 ~~~~~~i~~~~~~l~l~Gl~TH~a~ 176 (245)
.+ . . ++++.||-.|.++
T Consensus 148 ~~---~-~----~~~v~Glh~HvGS 164 (346)
T cd06829 148 EE---E-D----LDGIEGLHFHTLC 164 (346)
T ss_pred hh---h-h----hcCceEEEEccCc
Confidence 32 1 1 3678899889875
No 55
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=98.13 E-value=0.0001 Score=67.55 Aligned_cols=172 Identities=14% Similarity=0.091 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCC-Cceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPE-DIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~-~i~~~~ 83 (245)
|.++|..++...++.+ +.++..-.||.-....+ +.|-+.|+-..++|.-++.+.++-.+.. .| .+
T Consensus 62 Dl~~I~Rkl~~w~~~L-----------prV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~ri--Iy 128 (448)
T KOG0622|consen 62 DLGAIERKLEAWKKAL-----------PRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERI--IY 128 (448)
T ss_pred cHHHHHHHHHHHHHhc-----------ccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHHHHHhcCCChHHe--Ee
Confidence 4456666666666665 35777778899776554 7777889888888888888766555443 35 44
Q ss_pred eccC-ChHHHHHHHccCCCcc-EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCcccCChhhHHHHH
Q 025987 84 VGHL-QSNKAKTLLGGVPNLD-MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIV 155 (245)
Q Consensus 84 lG~~-~~~~~~~~~~~~~~~~-l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~------m~R~G~~~~e~~~~~ 155 (245)
.++. +.+.++.++. .+ .+.|+|+.+.+..+.+. .. ..++.|.|.|... -.++|.+.+++..++
T Consensus 129 anpcK~~s~IkyAa~----~gV~~~tfDne~el~kv~~~----hP-~a~llLrIatdds~a~~~l~~KFG~~~~~~~~lL 199 (448)
T KOG0622|consen 129 ANPCKQVSQIKYAAK----HGVSVMTFDNEEELEKVAKS----HP-NANLLLRIATDDSTATCRLNLKFGCSLDNCRHLL 199 (448)
T ss_pred cCCCccHHHHHHHHH----cCCeEEeecCHHHHHHHHHh----CC-CceEEEEEccCCCcccccccCccCCCHHHHHHHH
Confidence 5555 4577777773 33 44668888766665543 33 5677777775532 457889999999999
Q ss_pred HHHHhcCCCeeEeEeeeeCCC--CC-CCcHHHHHHHHHHHHHHHHHhCCC
Q 025987 156 EHVRLRCPNLEFSGLMTIGMP--DY-TSTPENFRTLLNCRAEVCKALGMA 202 (245)
Q Consensus 156 ~~i~~~~~~l~l~Gl~TH~a~--~~-~~~~~~~~~~~~~~~~l~~~~g~~ 202 (245)
+.++ .+ ++++.|+.-|.++ .+ +.........+.+++...+ +|+.
T Consensus 200 d~ak-~l-~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e-~Gf~ 246 (448)
T KOG0622|consen 200 DMAK-EL-ELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAE-LGFE 246 (448)
T ss_pred HHHH-Hc-CceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHh-cCce
Confidence 9998 66 8999999889885 22 2223445556666776665 5765
No 56
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=78.45 E-value=10 Score=30.65 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=40.8
Q ss_pred ceEEEEEeCCCCCCcccCCh--hhHHHHHHHHHhcCCCeeEeEe-eeeCCCCCCCcHHHHHHHHH
Q 025987 129 LKVLVQVNTSGEESKSGIDP--SSCLGIVEHVRLRCPNLEFSGL-MTIGMPDYTSTPENFRTLLN 190 (245)
Q Consensus 129 ~~V~lkidtG~~m~R~G~~~--~e~~~~~~~i~~~~~~l~l~Gl-~TH~a~~~~~~~~~~~~~~~ 190 (245)
=+|+|-|||. +++|+.| +.+..+.+.-+ -.++.+-|. +--|..-++-+.+.+..|.+
T Consensus 25 GkVlLIVNtA---SkCGfTpQYegLe~Ly~ky~--~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 25 GKVLLIVNTA---SKCGFTPQYEGLEALYKKYK--DKGFEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred CcEEEEEEcc---cccCCcHhHHHHHHHHHHHh--hCCcEEEeccccccccCCCCCHHHHHHHHH
Confidence 3588999996 9999998 67888888775 468999887 44555433345566666654
No 57
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=75.05 E-value=4.3 Score=36.89 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=59.1
Q ss_pred CCcccCC--h--hhHHHHHHHHHhcCCCeeEeEeeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCC----CCCee-ecc
Q 025987 141 ESKSGID--P--SSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAE----DQCEL-SMG 211 (245)
Q Consensus 141 m~R~G~~--~--~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~----~~~~~-S~g 211 (245)
|.++||+ | +...+-..+|+ .+-+.-+.+|||=.-..++.....+..|.++.+...+ +|+.. +...+ ..|
T Consensus 1 m~~~GfSifp~~~~~~~~~~Yi~-~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ank-lg~~vivDvnPsil~~l~ 78 (360)
T COG3589 1 MRMLGFSIFPNRSPKEKDIAYID-RMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANK-LGLRVIVDVNPSILKELN 78 (360)
T ss_pred CcceeEEeccCCCcchhHHHHHH-HHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHh-cCcEEEEEcCHHHHhhcC
Confidence 6678875 3 33445667777 6777889999886654222234678899998888877 58642 11233 355
Q ss_pred CcccHH-HHHHcCCCeeeeCccccC
Q 025987 212 MSGDFE-QAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 212 ~s~~~~-~~~~~~~d~VR~G~~lyG 235 (245)
.|.+.. ...+.|.+.+|.-..+=|
T Consensus 79 ~S~~~l~~f~e~G~~glRlD~gfS~ 103 (360)
T COG3589 79 ISLDNLSRFQELGVDGLRLDYGFSG 103 (360)
T ss_pred CChHHHHHHHHhhhhheeecccCCH
Confidence 565532 345678999997655444
No 58
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=72.44 E-value=32 Score=28.91 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=91.8
Q ss_pred HHHHHHHHcCCCeeecc------------cHHHHHHhhcCCCCCceeeeeccCChHHHHHHHccCCCccEEEeeCCHHHH
Q 025987 47 SLIRQVYDAGHRSFGEN------------YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIA 114 (245)
Q Consensus 47 ~~i~~~~~~G~~~~~va------------~~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a 114 (245)
..++.+.++|++++=+- .++....+|+....|+-.|++-.-+...++.+++. .-..+++-+.+.+..
T Consensus 16 ~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~-g~~~i~~H~E~~~~~ 94 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEA-GADYITFHAEATEDP 94 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHH-T-SEEEEEGGGTTTH
T ss_pred HHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhc-CCCEEEEcccchhCH
Confidence 44666777787753211 14445556666434443366655455566666631 112355555666666
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC--CCCCcHHHHHHHHHHH
Q 025987 115 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFRTLLNCR 192 (245)
Q Consensus 115 ~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~--~~~~~~~~~~~~~~~~ 192 (245)
.++-+..++.|. +.. |-++-++ +.+.+ +.+ ++.+...-+||--+- ...+....+++..++.
T Consensus 95 ~~~i~~ik~~g~-k~G--ialnP~T-------~~~~~----~~~---l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~ 157 (201)
T PF00834_consen 95 KETIKYIKEAGI-KAG--IALNPET-------PVEEL----EPY---LDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELR 157 (201)
T ss_dssp HHHHHHHHHTTS-EEE--EEE-TTS--------GGGG----TTT---GCCSSEEEEESS-TTTSSB--HGGHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CEE--EEEECCC-------CchHH----HHH---hhhcCEEEEEEecCCCCcccccHHHHHHHHHHH
Confidence 666666677776 444 4555551 22322 222 356778888987763 2345556788888888
Q ss_pred HHHHHHhCCCCCCCeeeccCcc-cHHHHHHcCCCeeeeCccccCC
Q 025987 193 AEVCKALGMAEDQCELSMGMSG-DFEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 193 ~~l~~~~g~~~~~~~~S~g~s~-~~~~~~~~~~d~VR~G~~lyG~ 236 (245)
+.+.++ |... ...+=.|.+. +.+...+.|.|.+=.|+++|+.
T Consensus 158 ~~~~~~-~~~~-~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 158 KLIPEN-GLDF-EIEVDGGINEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp HHHHHH-TCGS-EEEEESSESTTTHHHHHHHT--EEEESHHHHTS
T ss_pred HHHHhc-CCce-EEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 877764 6442 0122344333 3444457899999999999974
No 59
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=71.57 E-value=54 Score=32.50 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc-cChHHHHHHHHcCCCee-ec---------ccHHHHHHhhc
Q 025987 5 TVEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT-KPVSLIRQVYDAGHRSF-GE---------NYVQEIVDKAP 73 (245)
Q Consensus 5 ~~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa-Hg~~~i~~~~~~G~~~~-~v---------a~~~Ea~~lr~ 73 (245)
++...+..|+..+....+....+..+- ...++..+-=. .+...+..|.+.|+..| +| +++.|..++.+
T Consensus 101 a~lERYaaqI~F~~~fs~s~~~rF~~q-R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~ 179 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADADSGALKFELS-RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAE 179 (637)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhh-hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHH
Confidence 355888899988877765544444332 23344322212 33344567889998888 55 23346655555
Q ss_pred CCCCCceeeeeccCChHHHHHHHccCCCccEEEeeCC---HHHHHHHHHHHHhcCC
Q 025987 74 QLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGN---EKIANHLDKAVSNLGR 126 (245)
Q Consensus 74 ~~~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s---~~~a~~l~~~a~~~~~ 126 (245)
.....+.+-.+.....+.+..+++ .+|+++.+.+ .+.+.++++.+.+.|+
T Consensus 180 ~~n~~v~v~~i~~~~~~dl~ev~~---~~DiVi~vsDdy~~~~Lr~lN~acvkegk 232 (637)
T TIGR03693 180 ETDDALLVQEIDFAEDQHLHEAFE---PADWVLYVSDNGDIDDLHALHAFCKEEGK 232 (637)
T ss_pred HhCCCCceEeccCCcchhHHHhhc---CCcEEEEECCCCChHHHHHHHHHHHHcCC
Confidence 544444335566556788888884 5887777654 5668899999988875
No 60
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=68.26 E-value=77 Score=27.17 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=47.2
Q ss_pred CeeEeEeeeeCCC--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCccc-HHHHHHcCCCeeeeCccccCCCcc
Q 025987 164 NLEFSGLMTIGMP--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREY 239 (245)
Q Consensus 164 ~l~l~Gl~TH~a~--~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~-~~~~~~~~~d~VR~G~~lyG~~p~ 239 (245)
.+.+.=+||=-+- ...+....+++.+++.+.+.++ | +. ...+-.|.+.. .+...+.|.|.+=.|+++|+...|
T Consensus 131 ~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~-~-~~-~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~ 206 (220)
T COG0036 131 DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDER-L-DI-LIEVDGGINLETIKQLAAAGADVFVAGSALFGADDY 206 (220)
T ss_pred hCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhccc-C-Ce-EEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccH
Confidence 4556668876653 3456677888888877776652 4 21 12234554432 344446899999999999998653
No 61
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=64.14 E-value=1.5e+02 Score=29.10 Aligned_cols=194 Identities=19% Similarity=0.171 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc--cChHHHHHHHHcC-CCeeec--ccHHHHH-HhhcC-CCCCce
Q 025987 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT--KPVSLIRQVYDAG-HRSFGE--NYVQEIV-DKAPQ-LPEDIK 80 (245)
Q Consensus 8 ~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa--Hg~~~i~~~~~~G-~~~~~v--a~~~Ea~-~lr~~-~~~~i~ 80 (245)
+-|++.++.|-....++.+.++=. .+-..+-=+|- |.. .+..+...| -..||. .+=.|.+ .|.-+ -+.++
T Consensus 88 ~IL~~Rl~~ln~aF~~Ai~ey~Y~-g~Y~~VyPIKvNQ~r~-vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~~~~~~~~- 164 (652)
T COG1166 88 QILQHRLRSLNAAFARAIEEYGYP-GGYFAVYPIKVNQHRR-VVESLVASGKGYPLGLEAGSKAELMAVLAHAGNPGSL- 164 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CceeEEEEeeecchHH-HHHHHHhccCCCCCcccCCCHHHHHHHHHhcCCCCCe-
Confidence 457788888888888887877753 34444445687 443 223344433 111222 2333333 34333 22332
Q ss_pred eeeeccCChHHHHHHH--ccCCCccEEEeeCCHHHHHHHHHHHHhcCCC-CceEEEEEe---------CCCCCCcccCCh
Q 025987 81 WHFVGHLQSNKAKTLL--GGVPNLDMVEGVGNEKIANHLDKAVSNLGRK-PLKVLVQVN---------TSGEESKSGIDP 148 (245)
Q Consensus 81 ~~~lG~~~~~~~~~~~--~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~-~~~V~lkid---------tG~~m~R~G~~~ 148 (245)
+..-|+-+.+.++.+. ++. .+++.++|.-+..++.+-+.|++.|.+ .+.|-+++- +|++-+++|.+.
T Consensus 165 IvCNGyKDrEyI~lAlig~kL-Gh~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~RL~sqGsGkW~~SgG~ksKFGLsa 243 (652)
T COG1166 165 IVCNGYKDREYIRLALIGEKL-GHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLSA 243 (652)
T ss_pred EEecCcccHHHHHHHHHHHHh-CCceEEEEechHHHHHHHHHHHHcCCCCcceeEEEEecccccccccccCchhccCCCH
Confidence 1233887777776642 212 267999999999999988899988863 245555554 778889999999
Q ss_pred hhHHHHHHHHHhcCCCeeEeEe-eeeCC--C--CC-CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025987 149 SSCLGIVEHVRLRCPNLEFSGL-MTIGM--P--DY-TSTPENFRTLLNCRAEVCKALGMAEDQCELSMG 211 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~l~Gl-~TH~a--~--~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g 211 (245)
.++.++++.++ ...- ++.+ |-||- + ++ ......++.-.+++-+|++ +|.+. .++..|
T Consensus 244 ~qvL~~v~~Lr-e~~~--Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~k-lGa~i--~~~dVG 306 (652)
T COG1166 244 TQVLQVVERLR-EANL--LDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRK-LGANI--KYFDVG 306 (652)
T ss_pred HHHHHHHHHHH-hcch--HHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHH-cCCCc--eEEecc
Confidence 99999999997 5443 3334 44553 2 21 1223344455555667777 58663 666544
No 62
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=63.53 E-value=97 Score=26.65 Aligned_cols=170 Identities=9% Similarity=0.037 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCCeee--------cccHH----HHHHhhcCCCCCceeeeeccCChHHHHHHHccCCCcc-EEEeeCCHHH
Q 025987 47 SLIRQVYDAGHRSFG--------ENYVQ----EIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLD-MVEGVGNEKI 113 (245)
Q Consensus 47 ~~i~~~~~~G~~~~~--------va~~~----Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~~~~~~-l~~~v~s~~~ 113 (245)
+.++.+.++|++++= |-++. .-..+|....-++ |++-.-+.+.++.+++. ..+ +++-+.+...
T Consensus 29 ~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~~~Dv--HLMv~~P~~~i~~~~~a--Gad~It~H~Ea~~~ 104 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPTHCFKDV--HLMVRDQFEVAKACVAA--GADIVTLQVEQTHD 104 (228)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCCCCCEEE--EeccCCHHHHHHHHHHh--CCCEEEEcccCccc
Confidence 446677778877631 12211 1222332222234 55443344555666631 233 3333332223
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC--CCCCcHHHHHHHHHH
Q 025987 114 ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFRTLLNC 191 (245)
Q Consensus 114 a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~--~~~~~~~~~~~~~~~ 191 (245)
..+.-+..++.|. ++++=|-+|-+ .+.+.+.. .+. .+...=+||.-+- ...+....+++..++
T Consensus 105 ~~~~l~~Ik~~g~-~~kaGlalnP~-------Tp~~~i~~---~l~----~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~l 169 (228)
T PRK08091 105 LALTIEWLAKQKT-TVLIGLCLCPE-------TPISLLEP---YLD----QIDLIQILTLDPRTGTKAPSDLILDRVIQV 169 (228)
T ss_pred HHHHHHHHHHCCC-CceEEEEECCC-------CCHHHHHH---HHh----hcCEEEEEEECCCCCCccccHHHHHHHHHH
Confidence 3233233455564 55665666655 12233332 333 3456667887763 334556678888887
Q ss_pred HHHHHHHhCCCCCCCeeeccCcc-cHHHHHHcCCCeeeeCccccCCC
Q 025987 192 RAEVCKALGMAEDQCELSMGMSG-DFEQAIEMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 192 ~~~l~~~~g~~~~~~~~S~g~s~-~~~~~~~~~~d~VR~G~~lyG~~ 237 (245)
.+.+.+ .|++. ...+-.|.+. +.+...+.|.|.+=.|+++|+..
T Consensus 170 r~~~~~-~~~~~-~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~ 214 (228)
T PRK08091 170 ENRLGN-RRVEK-LISIDGSMTLELASYLKQHQIDWVVSGSALFSQG 214 (228)
T ss_pred HHHHHh-cCCCc-eEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCC
Confidence 777766 36542 1222344332 23344578999999999999843
No 63
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=56.88 E-value=77 Score=28.98 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCe--eecccHHHHHHhhcC---CCCCceeeeeccCChHHHHHHHcc-CCCccEEE-eeCCHHHHHHHHH
Q 025987 47 SLIRQVYDAGHRS--FGENYVQEIVDKAPQ---LPEDIKWHFVGHLQSNKAKTLLGG-VPNLDMVE-GVGNEKIANHLDK 119 (245)
Q Consensus 47 ~~i~~~~~~G~~~--~~va~~~Ea~~lr~~---~~~~i~~~~lG~~~~~~~~~~~~~-~~~~~l~~-~v~s~~~a~~l~~ 119 (245)
.+++.+.++|++- ++|.+.++|..+.+- .+.|+ .-=-+++...+-.+++. +...++-+ .+.+.+..+.+-+
T Consensus 38 ~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPl--VADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~ 115 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPL--VADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDVVE 115 (346)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCE--EEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHHH
Confidence 3356677899885 888888888876533 22232 11123333333333321 12233333 2677888899999
Q ss_pred HHHhcCCCCceEEEEEeCCCC----CCccc-CChhhH-HHHHHHHHhcCCCeeEeEe-eeeCCC
Q 025987 120 AVSNLGRKPLKVLVQVNTSGE----ESKSG-IDPSSC-LGIVEHVRLRCPNLEFSGL-MTIGMP 176 (245)
Q Consensus 120 ~a~~~~~~~~~V~lkidtG~~----m~R~G-~~~~e~-~~~~~~i~~~~~~l~l~Gl-~TH~a~ 176 (245)
.|++.+. +++ |=||.|.- +.|.| ..|+.+ ...++++. -+..+.|.-+ .|.=++
T Consensus 116 ~ak~~~i-pIR--IGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~-~le~~~F~diviS~KsS 175 (346)
T TIGR00612 116 KARDHGK-AMR--IGVNHGSLERRLLEKYGDATAEAMVQSALEEAA-ILEKLGFRNVVLSMKAS 175 (346)
T ss_pred HHHHCCC-CEE--EecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHH-HHHHCCCCcEEEEEEcC
Confidence 9999887 655 57898841 23566 344332 23334443 3333334333 444443
No 64
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=55.53 E-value=96 Score=25.06 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=36.9
Q ss_pred cEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEe
Q 025987 103 DMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 170 (245)
Q Consensus 103 ~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl 170 (245)
.....++..+.+..+-+.+.+.+. ++-+ +|-.++.+..+.+.+.+.+|++++.|.
T Consensus 24 ~~~~r~~g~dl~~~ll~~~~~~~~-~v~l------------lG~~~~~~~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 24 PLPERVTGSDLMPALLELAAQKGL-RVFL------------LGAKPEVLEKAAERLRARYPGLKIVGY 78 (171)
T ss_pred CCCcccCcHHHHHHHHHHHHHcCC-eEEE------------ECCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 355677788888777777766554 4333 234566677777777656888888884
No 65
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=55.38 E-value=59 Score=27.77 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=39.0
Q ss_pred CCcEEEEEecc--cChHHHHHHHHcCCCeeecc------cHHHHHHhhcCCCCCceeeeeccCChHHHHH
Q 025987 33 EQIRVVAVSKT--KPVSLIRQVYDAGHRSFGEN------YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKT 94 (245)
Q Consensus 33 ~~~~l~aVvKa--Hg~~~i~~~~~~G~~~~~va------~~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~ 94 (245)
++..++|=.|+ -|..+++.+.++|++++.|. |+..+++..+.....+..-++|...+.+...
T Consensus 55 pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~ 124 (217)
T COG0269 55 PDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAK 124 (217)
T ss_pred CCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHH
Confidence 45689999999 67778888899999997764 3444544333333333234556555444333
No 66
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.50 E-value=54 Score=25.60 Aligned_cols=59 Identities=8% Similarity=0.192 Sum_probs=46.7
Q ss_pred ccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCC
Q 025987 102 LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 164 (245)
Q Consensus 102 ~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~ 164 (245)
+++.+.=+|.+.++.+.+..++.. . +|.|----|++.+++|.+++-+.+.++... ...+
T Consensus 3 vgiVIVSHS~~lAeGv~~li~em~--~-dv~i~~~gGtddg~iGTs~~~I~~aI~~~~-~ad~ 61 (129)
T COG3412 3 VGIVIVSHSKELAEGVAELIREMA--G-DVPITYAGGTDDGQIGTSFEKIMEAIEKAN-EADH 61 (129)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHh--C-CCceEEecCCCCCCcCcCHHHHHHHHHhcc-ccCc
Confidence 467777799999999999988775 3 777788888889999999887777777654 4444
No 67
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=53.76 E-value=1.1e+02 Score=28.13 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=59.3
Q ss_pred EEEEEecccCh----HHHHHHHHcCCCe--eecccHHHHHHhhcC---CCCCceeeeeccCChHHHHHHHcc-CCCccEE
Q 025987 36 RVVAVSKTKPV----SLIRQVYDAGHRS--FGENYVQEIVDKAPQ---LPEDIKWHFVGHLQSNKAKTLLGG-VPNLDMV 105 (245)
Q Consensus 36 ~l~aVvKaHg~----~~i~~~~~~G~~~--~~va~~~Ea~~lr~~---~~~~i~~~~lG~~~~~~~~~~~~~-~~~~~l~ 105 (245)
+=|--+|+|.. ..+++|.++|++- ++|.+.+.|..+.+- ...|+ ..=-+++..-+-..++. +..+++-
T Consensus 25 QSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPL--VaDiHf~~rla~~~~~~g~~k~RIN 102 (361)
T COG0821 25 QSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPL--VADIHFDYRLALEAAECGVDKVRIN 102 (361)
T ss_pred EeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCE--EEEeeccHHHHHHhhhcCcceEEEC
Confidence 33444566654 3356788899885 899999998875432 33342 11112333333333321 1223444
Q ss_pred Ee-eCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 025987 106 EG-VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 139 (245)
Q Consensus 106 ~~-v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~ 139 (245)
+- +.+.+....+-+.|++.|+ +++ |-||.|.
T Consensus 103 PGNig~~~~v~~vVe~Ak~~g~-piR--IGVN~GS 134 (361)
T COG0821 103 PGNIGFKDRVREVVEAAKDKGI-PIR--IGVNAGS 134 (361)
T ss_pred CcccCcHHHHHHHHHHHHHcCC-CEE--EecccCc
Confidence 42 6778888888889999998 655 5788883
No 68
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=53.05 E-value=74 Score=29.28 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCCe--eecccHHHHHHhhcC-CCCCceeeeeccCChHHHHHHHcc-CCCccEEEe-eCC-HHHHHHHHHH
Q 025987 47 SLIRQVYDAGHRS--FGENYVQEIVDKAPQ-LPEDIKWHFVGHLQSNKAKTLLGG-VPNLDMVEG-VGN-EKIANHLDKA 120 (245)
Q Consensus 47 ~~i~~~~~~G~~~--~~va~~~Ea~~lr~~-~~~~i~~~~lG~~~~~~~~~~~~~-~~~~~l~~~-v~s-~~~a~~l~~~ 120 (245)
.+++.+.++|++- ++|.+.++|..+.+- -..++++.-=.++++..+-.+++. +...++-+- +.+ .+..+.+-+.
T Consensus 46 ~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ 125 (360)
T PRK00366 46 AQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEA 125 (360)
T ss_pred HHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHH
Confidence 3356677899885 888888888876543 111332122245566555555532 111222221 456 7778888889
Q ss_pred HHhcCCCCceEEEEEeCCC
Q 025987 121 VSNLGRKPLKVLVQVNTSG 139 (245)
Q Consensus 121 a~~~~~~~~~V~lkidtG~ 139 (245)
|++.+. +++ |=+|.|.
T Consensus 126 ak~~~i-pIR--IGvN~GS 141 (360)
T PRK00366 126 AKDYGI-PIR--IGVNAGS 141 (360)
T ss_pred HHHCCC-CEE--EecCCcc
Confidence 998887 655 5789883
No 69
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=52.00 E-value=1.3e+02 Score=29.65 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCe--eecccHHHHHHhhcC--------CCCCceeeeeccCChHHHHHHHccCCCccEEEe-e-C-----
Q 025987 47 SLIRQVYDAGHRS--FGENYVQEIVDKAPQ--------LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEG-V-G----- 109 (245)
Q Consensus 47 ~~i~~~~~~G~~~--~~va~~~Ea~~lr~~--------~~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~-v-~----- 109 (245)
.+++.+.++|++. ++|.+.+||..++.- ...|+ .-=-++++.-+..+++.+.+.++-+- + +
T Consensus 45 ~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPL--VADIHF~~~~A~~a~~~v~kiRINPGN~~~~~k~f 122 (611)
T PRK02048 45 AQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPL--VADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTF 122 (611)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCE--EEecCCCcHHHHHHHHhhCCEEECCCcCCCccccc
Confidence 3456678899885 899999999875532 12232 12234455444444432222233221 1 1
Q ss_pred ------CH----------HHHHHHHHHHHhcCCCCceEEEEEeCCCC----CCcccCChhhH-HHHHHHHHhcCCCeeEe
Q 025987 110 ------NE----------KIANHLDKAVSNLGRKPLKVLVQVNTSGE----ESKSGIDPSSC-LGIVEHVRLRCPNLEFS 168 (245)
Q Consensus 110 ------s~----------~~a~~l~~~a~~~~~~~~~V~lkidtG~~----m~R~G~~~~e~-~~~~~~i~~~~~~l~l~ 168 (245)
+. +....+-+.|++.|+ +++ |=+|.|.- |.|.|-.|+-+ ...++++. -+..+.+.
T Consensus 123 ~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~-~iR--IGvN~GSL~~~i~~~yg~tpe~mVeSAle~~~-i~e~~~f~ 198 (611)
T PRK02048 123 KKLEYTDEEYAQEIQKIRDRFVPFLNICKENHT-AIR--IGVNHGSLSDRIMSRYGDTPEGMVESCMEFLR-ICVEEHFT 198 (611)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHCCC-CEE--EecCCcCchHHHHHHhCCChHHHHHHHHHHHH-HHHHCCCC
Confidence 12 333445566778887 655 57887731 45778666433 23333333 23333333
Q ss_pred Ee-eeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 025987 169 GL-MTIGMPDYTSTPENFRTLLNCRAEVCKALGMA 202 (245)
Q Consensus 169 Gl-~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~ 202 (245)
-+ +|.=+++. ..-....+.+.+.+.+. |++
T Consensus 199 diviS~KsS~~---~~~V~AyRlLa~~l~~~-g~d 229 (611)
T PRK02048 199 DVVISIKASNT---VVMVRTVRLLVAVMEAE-GMH 229 (611)
T ss_pred cEEEEEEeCCc---HHHHHHHHHHHHHHHhc-CCC
Confidence 33 66666543 23344455555566553 654
No 70
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.04 E-value=1.7e+02 Score=25.54 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcC
Q 025987 115 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (245)
Q Consensus 115 ~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~ 162 (245)
..+-+.|+..|. .+.+. +-.. ++.+++.+.++++.+. ..
T Consensus 115 ~~~i~~a~~~G~-~v~~~--~eda-----~r~~~~~l~~~~~~~~-~~ 153 (262)
T cd07948 115 VEVIEFVKSKGI-EVRFS--SEDS-----FRSDLVDLLRVYRAVD-KL 153 (262)
T ss_pred HHHHHHHHHCCC-eEEEE--EEee-----CCCCHHHHHHHHHHHH-Hc
Confidence 333355666665 44443 3222 2345788888888887 55
No 71
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=48.02 E-value=75 Score=24.37 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=39.3
Q ss_pred CccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh
Q 025987 101 NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP 148 (245)
Q Consensus 101 ~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~ 148 (245)
...++.-++|.+.+..|.+.|.+.|. +..++.++.-|+ -+=+|+.|
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi-~~~l~te~p~gt-~T~LaigP 100 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSI-KHKLWIEQPENI-PTCIALKP 100 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEEcCCCC-ceEEEeCC
Confidence 35688999999999999999999998 888999998774 56678877
No 72
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=47.98 E-value=95 Score=25.47 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=32.5
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEe
Q 025987 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 170 (245)
Q Consensus 104 l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl 170 (245)
...-+.-.+.+..+-+.+.+.+. ++-+ +|-.|+.+..+.+.+.+.+|++++.|.
T Consensus 27 ~~~Rv~G~dl~~~l~~~~~~~~~-~vfl------------lG~~~~v~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 27 QQSRVAGPDLMEELCQRAGKEKL-PIFL------------YGGKPDVLQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred CCCccChHHHHHHHHHHHHHcCC-eEEE------------ECCCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 33445566777666666655544 3322 234555566677777646788888875
No 73
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=47.48 E-value=1.6e+02 Score=24.35 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=46.6
Q ss_pred cChHHHHHHHHcCCCeeeccc------------------------HHHHHHhhcCCCCCceeeee-ccCChHHHHHHHcc
Q 025987 44 KPVSLIRQVYDAGHRSFGENY------------------------VQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLLGG 98 (245)
Q Consensus 44 Hg~~~i~~~~~~G~~~~~va~------------------------~~Ea~~lr~~~~~~i~~~~l-G~~~~~~~~~~~~~ 98 (245)
.|++.++.+..+|+..+.+.. .+.+.+..+.+...+.+..+ ..+.++.+..++
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~-- 109 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLI-- 109 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHH--
Confidence 667777778888885544433 33333322233222322222 344555566666
Q ss_pred CCCccEEE-eeCCHHHHHHHHHHHHhcCC
Q 025987 99 VPNLDMVE-GVGNEKIANHLDKAVSNLGR 126 (245)
Q Consensus 99 ~~~~~l~~-~v~s~~~a~~l~~~a~~~~~ 126 (245)
+.+|+++ ++|+.+.-..+++.+.+.++
T Consensus 110 -~~~D~Vi~~~d~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 110 -NNVDLVLDCTDNFATRYLINDACVALGT 137 (202)
T ss_pred -hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 3467554 56888887889999888776
No 74
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=45.19 E-value=98 Score=21.16 Aligned_cols=62 Identities=16% Similarity=0.319 Sum_probs=42.0
Q ss_pred cEEEeeCCHHHHHHHHHHHHhcCCCCceEE---EEEeCCCCCCcccC----ChhhHHHHHHHHHhcCCCeeEeEeee
Q 025987 103 DMVEGVGNEKIANHLDKAVSNLGRKPLKVL---VQVNTSGEESKSGI----DPSSCLGIVEHVRLRCPNLEFSGLMT 172 (245)
Q Consensus 103 ~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~---lkidtG~~m~R~G~----~~~e~~~~~~~i~~~~~~l~l~Gl~T 172 (245)
....+.+|...+-...+.+++.|. +.++. =+|..| +|+ .+++...+.+.++ -.++.++|++.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi-~~~liP~P~~i~~~-----CG~al~~~~~d~~~i~~~l~--~~~i~~~~iy~ 71 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI-PVRLIPTPREISAG-----CGLALRFEPEDLEKIKEILE--ENGIEYEGIYE 71 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC-cEEEeCCChhccCC-----CCEEEEEChhhHHHHHHHHH--HCCCCeeEEEE
Confidence 456889999999999999998876 44431 223333 553 4456666666664 46799999974
No 75
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.78 E-value=2.1e+02 Score=24.74 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=40.4
Q ss_pred ccCChHHHHHHHcc-CCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcC
Q 025987 85 GHLQSNKAKTLLGG-VPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (245)
Q Consensus 85 G~~~~~~~~~~~~~-~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~ 162 (245)
+....+.++.+.+. ++..++...+++...+...-+.+++.|. .+.+-+. +++ ..+|+.+.++++.+. +.
T Consensus 84 ~~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~-~v~~~~~-~~~------~~~~~~~~~~~~~~~-~~ 153 (263)
T cd07943 84 GIGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGM-DVVGFLM-MSH------MASPEELAEQAKLME-SY 153 (263)
T ss_pred CccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCC-eEEEEEE-ecc------CCCHHHHHHHHHHHH-Hc
Confidence 44556777777642 1112344444555566666677777776 4444331 332 257788888888887 55
No 76
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=43.87 E-value=73 Score=29.35 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=55.6
Q ss_pred CcEEEEEecc--cCh----HHHHHHHHcCCCe--eecccHHHHHHhhcC------CCCCceeeeeccCChHHHHHHHccC
Q 025987 34 QIRVVAVSKT--KPV----SLIRQVYDAGHRS--FGENYVQEIVDKAPQ------LPEDIKWHFVGHLQSNKAKTLLGGV 99 (245)
Q Consensus 34 ~~~l~aVvKa--Hg~----~~i~~~~~~G~~~--~~va~~~Ea~~lr~~------~~~~i~~~~lG~~~~~~~~~~~~~~ 99 (245)
.+.+=.++++ ... .+++.+.++|++- ++|.+.++|..+.+- ...++++.-=-++++.-+-.+++.+
T Consensus 16 PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~v 95 (359)
T PF04551_consen 16 PISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEAV 95 (359)
T ss_dssp --EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC-
T ss_pred CEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHHh
Confidence 3455455555 432 3356678899885 889999998875432 1123322222455665555555422
Q ss_pred CCccEEEe-e--------CC-HHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 025987 100 PNLDMVEG-V--------GN-EKIANHLDKAVSNLGRKPLKVLVQVNTSG 139 (245)
Q Consensus 100 ~~~~l~~~-v--------~s-~~~a~~l~~~a~~~~~~~~~V~lkidtG~ 139 (245)
...++-+- + .+ .+..+.+-+.|++.+. +++ |=+|.|.
T Consensus 96 ~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~i-pIR--IGvN~GS 142 (359)
T PF04551_consen 96 DKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGI-PIR--IGVNSGS 142 (359)
T ss_dssp SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT--EEE--EEEEGGG
T ss_pred CeEEECCCcccccccccccchHHHHHHHHHHHHHCCC-CEE--Eeccccc
Confidence 22333332 3 56 7888888889999887 555 5899883
No 77
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=43.82 E-value=2e+02 Score=28.32 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCCe--eecccHHHHHHhhc-------C-CCCCceeeeeccCChHHHHHHHccCCCccEEEe-eCC-----
Q 025987 47 SLIRQVYDAGHRS--FGENYVQEIVDKAP-------Q-LPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEG-VGN----- 110 (245)
Q Consensus 47 ~~i~~~~~~G~~~--~~va~~~Ea~~lr~-------~-~~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~-v~s----- 110 (245)
.+++.+.++|++. ++|.+.+||..+.. . ...|+ .-=-++++.-+..+++.+.+.++-+- +.+
T Consensus 49 ~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPL--VADIHF~~~~A~~a~~~vdkiRINPGNi~~~~k~F 126 (606)
T PRK00694 49 RQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPL--VADIHFFPQAAMHVADFVDKVRINPGNYVDKRNMF 126 (606)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCE--EeecCCChHHHHHHHHhcCceEECCcccCCccccc
Confidence 3356678899885 89999999987542 1 22232 22234456555444432222333221 122
Q ss_pred -----------------HHHHHHHHHHHHhcCCCCceEEEEEeCCCC----CCcccCChhhH-HHHHHHHHhcCCCeeEe
Q 025987 111 -----------------EKIANHLDKAVSNLGRKPLKVLVQVNTSGE----ESKSGIDPSSC-LGIVEHVRLRCPNLEFS 168 (245)
Q Consensus 111 -----------------~~~a~~l~~~a~~~~~~~~~V~lkidtG~~----m~R~G~~~~e~-~~~~~~i~~~~~~l~l~ 168 (245)
.+....+-+.|++.|+ +++ |-+|.|.- |+|.|-.|+-+ ...++++. -+..+.+.
T Consensus 127 ~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~-~IR--IGvN~GSL~~~i~~~yG~tpegmVeSAle~~~-i~e~~~f~ 202 (606)
T PRK00694 127 TGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGK-AMR--IGVNHGSLSERVMQRYGDTIEGMVYSALEYIE-VCEKLDYR 202 (606)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHCCC-CEE--EecCCcCchHHHHHHhCCCHHHHHHHHHHHHH-HHHHCCCC
Confidence 2444555567788887 655 57887731 45778655433 22333333 23333333
Q ss_pred Ee-eeeCCCC
Q 025987 169 GL-MTIGMPD 177 (245)
Q Consensus 169 Gl-~TH~a~~ 177 (245)
-+ +|.=+++
T Consensus 203 diviS~KsSn 212 (606)
T PRK00694 203 DVVFSMKSSN 212 (606)
T ss_pred cEEEEEEcCC
Confidence 33 6666654
No 78
>PRK07534 methionine synthase I; Validated
Probab=43.61 E-value=1e+02 Score=28.03 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=41.4
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcC-CCeeEeEe-eee
Q 025987 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC-PNLEFSGL-MTI 173 (245)
Q Consensus 104 l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~-~~l~l~Gl-~TH 173 (245)
+..|+.|++.++.+-+.+++.++ ++-|.+-++.++ -.+.|.+.+++. +.+. .+ +.+...|+ ++|
T Consensus 149 ~~ET~p~l~E~~a~~~~~~~~~~-Pv~vSft~~~~g-~l~~G~~~~~~~---~~~~-~~~~~~~avGvNC~~ 214 (336)
T PRK07534 149 WVETISAPEEIRAAAEAAKLAGM-PWCGTMSFDTAG-RTMMGLTPADLA---DLVE-KLGEPPLAFGANCGV 214 (336)
T ss_pred EEeccCCHHHHHHHHHHHHHcCC-eEEEEEEECCCC-eeCCCCcHHHHH---HHHH-hcCCCceEEEecCCC
Confidence 56789999999999998887776 666666665542 345666554444 4444 33 24566677 554
No 79
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=42.81 E-value=80 Score=28.27 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=50.2
Q ss_pred EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEe-eeeCC
Q 025987 105 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL-MTIGM 175 (245)
Q Consensus 105 ~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl-~TH~a 175 (245)
-.|+.+...++++-++.++.++ +.-+-.-++.++ --|.|-..+ +.+.-+. .+|++-..|+ ++|+-
T Consensus 153 ~ETip~i~Ea~Aiv~l~~~~s~-p~wISfT~~d~~-~lr~Gt~l~---eaa~~~~-~~~~iaa~gvNC~~p~ 218 (300)
T COG2040 153 CETLPNITEAEAIVQLVQEFSK-PAWISFTLNDDT-RLRDGTPLS---EAAAILA-GLPNIAALGVNCCHPD 218 (300)
T ss_pred ecccCChHHHHHHHHHHHHhCC-ceEEEEEeCCCC-ccCCCccHH---HHHHHHh-cCcchhheeeccCChh
Confidence 4689999999999999998888 877778888653 677786544 4455666 7888888888 77763
No 80
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=41.52 E-value=1.4e+02 Score=26.62 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=41.0
Q ss_pred EEEeeCCHHHHHHHHHHHHhc--CCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEe
Q 025987 104 MVEGVGNEKIANHLDKAVSNL--GRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 170 (245)
Q Consensus 104 l~~~v~s~~~a~~l~~~a~~~--~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl 170 (245)
+..|+.+++.++.+-+.+++. ++ ++-+.+-++.++ ..+.|.+ +.+.++.+. +.+.+...|+
T Consensus 158 ~~ET~~~~~E~~~~~~~~~~~~~~~-pv~is~~~~~~g-~l~~G~~---~~~~~~~l~-~~~~~~~iGi 220 (304)
T PRK09485 158 ACETIPNLDEAEALVELLKEEFPGV-PAWLSFTLRDGT-HISDGTP---LAEAAALLA-ASPQVVAVGV 220 (304)
T ss_pred EEeccCCHHHHHHHHHHHHHhcCCC-cEEEEEEeCCCC-cCCCCCC---HHHHHHHHh-cCCCceEEEe
Confidence 567899999999888888755 55 555555555442 5566765 445566666 5666777777
No 81
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=41.45 E-value=81 Score=27.78 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=41.5
Q ss_pred ccChHHHHHHHHcCCCeeeccc-----HHHHHHhhcCCCCCceeeeeccCChHHHHHHHccCCCccEEEeeCCHH
Q 025987 43 TKPVSLIRQVYDAGHRSFGENY-----VQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEK 112 (245)
Q Consensus 43 aHg~~~i~~~~~~G~~~~~va~-----~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~ 112 (245)
.|..+++..+.++|+|++++.. +.++....+....++++..+|.+.++.+..+++ ...+.+ ++.++-
T Consensus 190 v~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~--~Gvd~I-~vsai~ 261 (272)
T cd01573 190 VDSLEEALAAAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAA--AGADIL-VTSAPY 261 (272)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHH--cCCcEE-EEChhh
Confidence 5777777667788999887633 334443222221124446788888888888874 235666 666653
No 82
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=40.88 E-value=2.3e+02 Score=24.27 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=47.9
Q ss_pred cChHHHHHHHHcCCCeeecc------------------------cHHHHHHhhcCCCCCceee-eeccCChHHHHHHHcc
Q 025987 44 KPVSLIRQVYDAGHRSFGEN------------------------YVQEIVDKAPQLPEDIKWH-FVGHLQSNKAKTLLGG 98 (245)
Q Consensus 44 Hg~~~i~~~~~~G~~~~~va------------------------~~~Ea~~lr~~~~~~i~~~-~lG~~~~~~~~~~~~~ 98 (245)
.|++.++.+..+|+..|.+- +.+.+.+....+...+... +-..+.++.+..++.
T Consensus 43 lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~- 121 (245)
T PRK05690 43 LGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDDDELAALIA- 121 (245)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHh-
Confidence 66777777888897554443 3333333222222222112 224555666666663
Q ss_pred CCCccEEE-eeCCHHHHHHHHHHHHhcCC
Q 025987 99 VPNLDMVE-GVGNEKIANHLDKAVSNLGR 126 (245)
Q Consensus 99 ~~~~~l~~-~v~s~~~a~~l~~~a~~~~~ 126 (245)
.+|+++ +.|+.+.-..+++++.+.++
T Consensus 122 --~~DiVi~~~D~~~~r~~ln~~~~~~~i 148 (245)
T PRK05690 122 --GHDLVLDCTDNVATRNQLNRACFAAKK 148 (245)
T ss_pred --cCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 577555 67888877789999988876
No 83
>PHA01627 DNA binding protein
Probab=39.50 E-value=1.5e+02 Score=22.39 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=40.3
Q ss_pred eeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 025987 81 WHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 138 (245)
Q Consensus 81 ~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG 138 (245)
+..+..+..++++.++. ..+++-.|.+.+.|+.+++.+.-.=. .=++-++++.|
T Consensus 20 ~v~~~~i~~~Eak~~v~---~~~~vSaIGH~sTA~lls~llg~~ip-~NRi~i~~~~G 73 (107)
T PHA01627 20 TVVIDKIDIEEAKELLE---NEEFVSAIGHDATANLLSNLCGVNLP-KNRIEIKLDKG 73 (107)
T ss_pred EEEEecCCHHHHHHHhc---ccCeEEeeccHHHHHHHHHHhCcccc-ccceEEEecCC
Confidence 34568888999999994 46799999999999999999863211 22455677777
No 84
>PLN02489 homocysteine S-methyltransferase
Probab=39.14 E-value=1.7e+02 Score=26.60 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=41.5
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC-CCCCcccCChhhHHHHHHHHHhcCCCeeEeEe
Q 025987 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS-GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 170 (245)
Q Consensus 104 l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG-~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl 170 (245)
+..|+.++..++.+-+.+++.+. .++|++.+..- ++..+.|.+.+ +.++.+. +...+...|+
T Consensus 185 ~~ET~~~l~E~~a~~~~~~~~~~-~~p~~iS~t~~~~~~l~~G~~~~---~~~~~~~-~~~~~~~iGi 247 (335)
T PLN02489 185 AFETIPNKLEAQAYVELLEEENI-KIPAWISFNSKDGVNVVSGDSLL---ECASIAD-SCKKVVAVGI 247 (335)
T ss_pred EEeccCChHHHHHHHHHHHHcCC-CCeEEEEEEeCCCCccCCCCcHH---HHHHHHH-hcCCceEEEe
Confidence 56789999999999888887764 56777777552 11345676544 4455555 5555667777
No 85
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=39.05 E-value=69 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhcCCCeeEeEeeeeCCC
Q 025987 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMP 176 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~l~Gl~TH~a~ 176 (245)
.+....++... ..|.+++.-+|-|.+-
T Consensus 142 ~~~l~~~e~~~-~~p~v~LiSlMDH~PG 168 (377)
T COG3454 142 PATLPLFEDLM-DHPRVKLISLMDHTPG 168 (377)
T ss_pred hhHHHHHHHHh-cCCCeeEEEecCCCCC
Confidence 44556667777 8999999999999984
No 86
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=38.69 E-value=2e+02 Score=24.92 Aligned_cols=111 Identities=16% Similarity=0.275 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccC--C--hhhHHHHHHHHHh-cCC-CeeEeEeeeeCCCCCCCcHHH
Q 025987 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGI--D--PSSCLGIVEHVRL-RCP-NLEFSGLMTIGMPDYTSTPEN 184 (245)
Q Consensus 111 ~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~--~--~~e~~~~~~~i~~-~~~-~l~l~Gl~TH~a~~~~~~~~~ 184 (245)
++++++|.+...+.+.....--++||+= +-+|. . ++.+.+.+..+.+ ..| .|+++|=|-..+ ...|
T Consensus 50 ~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVY---GtiG~~f~~d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~-----r~~Q 121 (248)
T PF07476_consen 50 LEYVKWLKDRIRELGDEDYRPVLHIDVY---GTIGLAFDNDPDRMADYLAELEEAAAPFKLRIEGPMDAGS-----REAQ 121 (248)
T ss_dssp HHHHHHHHHHHHHHSSTT---EEEEE-T---THHHHHTTT-HHHHHHHHHHHHHHHTTS-EEEE-SB--SS-----HHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccEEEEcc---chHHHHhCCCHHHHHHHHHHHHHhcCCCeeeeeCCcCCCC-----hHHH
Confidence 4566667666555543122334678874 44563 2 2344444444320 245 499999774332 4679
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeeeccCcc-cHHHHH-HcCCCeeeeC
Q 025987 185 FRTLLNCRAEVCKALGMAEDQCELSMGMSG-DFEQAI-EMGSTSVRIG 230 (245)
Q Consensus 185 ~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~-~~~~~~-~~~~d~VR~G 230 (245)
++.+..+.+.|.. .|++..+..=-+++|. |..... ....+||.+=
T Consensus 122 I~~l~~Lr~~L~~-~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIK 168 (248)
T PF07476_consen 122 IEALAELREELDR-RGINVEIVADEWCNTLEDIREFADAKAADMVQIK 168 (248)
T ss_dssp HHHHHHHHHHHHH-CT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-
T ss_pred HHHHHHHHHHHHh-cCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEec
Confidence 9999999999988 4876422111244442 222212 2345788653
No 87
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=38.37 E-value=1.7e+02 Score=25.12 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=48.3
Q ss_pred cChHHHHHHHHcCCCeeec------------------------ccHHHHHHhhcCCCCCceeeee-ccCChHHHHHHHcc
Q 025987 44 KPVSLIRQVYDAGHRSFGE------------------------NYVQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLLGG 98 (245)
Q Consensus 44 Hg~~~i~~~~~~G~~~~~v------------------------a~~~Ea~~lr~~~~~~i~~~~l-G~~~~~~~~~~~~~ 98 (245)
.|+..+..+..+|+..|.+ .+.+-+.+....+...+....+ ..+..+.+..++
T Consensus 35 lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~-- 112 (240)
T TIGR02355 35 LGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALI-- 112 (240)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--
Confidence 6666677777888755544 2333333222222222221222 445556666666
Q ss_pred CCCccEEE-eeCCHHHHHHHHHHHHhcCCCC
Q 025987 99 VPNLDMVE-GVGNEKIANHLDKAVSNLGRKP 128 (245)
Q Consensus 99 ~~~~~l~~-~v~s~~~a~~l~~~a~~~~~~~ 128 (245)
+.+|+++ ..|+.+.-..|++.+.+.++ |
T Consensus 113 -~~~DlVvd~~D~~~~r~~ln~~~~~~~i-p 141 (240)
T TIGR02355 113 -AEHDIVVDCTDNVEVRNQLNRQCFAAKV-P 141 (240)
T ss_pred -hcCCEEEEcCCCHHHHHHHHHHHHHcCC-C
Confidence 3578666 66888887889999998876 5
No 88
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=37.61 E-value=4.5e+02 Score=26.64 Aligned_cols=148 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCe--eecccHHHHHHhhcC---C---CCCceeeeeccCChHHHHHHHccCCCccEEEe--eC-------
Q 025987 47 SLIRQVYDAGHRS--FGENYVQEIVDKAPQ---L---PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEG--VG------- 109 (245)
Q Consensus 47 ~~i~~~~~~G~~~--~~va~~~Ea~~lr~~---~---~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~--v~------- 109 (245)
.+++.+.++|++. ++|.+.+||..++.- + ..++++.-=.++.+.-+..+++.+.+.++-+- .+
T Consensus 114 ~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~ 193 (733)
T PLN02925 114 DQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEK 193 (733)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccc
Confidence 3456677899875 899999999875421 1 11222122244566555555532222222221 11
Q ss_pred ----CHHHHHH----------HHHHHHhcCCCCceEEEEEeCCCC----CCcccCChhhH-HHHHHHHHhcCCCeeEeEe
Q 025987 110 ----NEKIANH----------LDKAVSNLGRKPLKVLVQVNTSGE----ESKSGIDPSSC-LGIVEHVRLRCPNLEFSGL 170 (245)
Q Consensus 110 ----s~~~a~~----------l~~~a~~~~~~~~~V~lkidtG~~----m~R~G~~~~e~-~~~~~~i~~~~~~l~l~Gl 170 (245)
+.++++. +-+.|++.++ +++ |-+|.|.- |+|.|-.|+-+ ...++++. -+..+.|.-+
T Consensus 194 ~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~-~iR--IGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~-i~e~~~f~di 269 (733)
T PLN02925 194 LEYTEDDYQKELEHIEEVFTPLVEKCKKYGR-AMR--IGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR-ICRKLDYHNF 269 (733)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHCCC-CEE--EecCCcCchHHHHHHhCCChHHHHHHHHHHHH-HHHHCCCCcE
Confidence 2233333 3445667776 555 57887731 45677666433 22333333 2333334443
Q ss_pred -eeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 025987 171 -MTIGMPDYTSTPENFRTLLNCRAEVCKALGMA 202 (245)
Q Consensus 171 -~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~ 202 (245)
+|.=+++. ..-...++.+...|.++ |++
T Consensus 270 viS~KsSn~---~~~V~AyR~La~~L~~~-g~~ 298 (733)
T PLN02925 270 VFSMKASNP---VVMVQAYRLLVAEMYVL-GWD 298 (733)
T ss_pred EEEEEcCCh---HHHHHHHHHHHHHHHhc-CCC
Confidence 66666432 22344455555566653 654
No 89
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=37.45 E-value=1.6e+02 Score=23.75 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=31.0
Q ss_pred EEEEecccChHHHHHHHHcCCCeeecccHH--------------HHHHhhcCCCCCceeeeeccCChHHHHHHHc
Q 025987 37 VVAVSKTKPVSLIRQVYDAGHRSFGENYVQ--------------EIVDKAPQLPEDIKWHFVGHLQSNKAKTLLG 97 (245)
Q Consensus 37 l~aVvKaHg~~~i~~~~~~G~~~~~va~~~--------------Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~ 97 (245)
++.++ .|..++++.+.+.|+|+++++.+- ...+.++....|+ ..+|.+.++.+..+.+
T Consensus 97 ~ig~S-~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv--~AlGGI~~~~i~~l~~ 168 (180)
T PF02581_consen 97 IIGAS-CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPV--YALGGITPENIPELRE 168 (180)
T ss_dssp EEEEE-ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCE--EEESS--TTTHHHHHH
T ss_pred EEEee-cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCE--EEEcCCCHHHHHHHHH
Confidence 44443 477766666667777777666551 1112222233344 5667777777776653
No 90
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=36.25 E-value=3.3e+02 Score=24.66 Aligned_cols=69 Identities=9% Similarity=0.044 Sum_probs=39.8
Q ss_pred ccCChHHHHHHHcc-CCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcC
Q 025987 85 GHLQSNKAKTLLGG-VPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (245)
Q Consensus 85 G~~~~~~~~~~~~~-~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~ 162 (245)
|....++++.+.+. ++..++....+..+.++..-+.+++.|. .+.+.+. .. ...+|+++.+.++.+. ++
T Consensus 86 g~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~-~v~~~l~--~s-----~~~~~e~l~~~a~~~~-~~ 155 (333)
T TIGR03217 86 GIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGM-DTVGFLM--MS-----HMTPPEKLAEQAKLME-SY 155 (333)
T ss_pred CccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCC-eEEEEEE--cc-----cCCCHHHHHHHHHHHH-hc
Confidence 54556778777642 1123343444555666666667787776 4443332 22 1256788888888876 54
No 91
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=33.94 E-value=1.1e+02 Score=24.45 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccc------ChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKTK------PVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 12 ~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaH------g~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
||+-..++. ..+++.+.. -+++.+.++|+- |...+ +.+++.|..-+-...+++|+++ +..++++ ++
T Consensus 8 HN~~S~~rv-~e~ariayg--fg~k~lV~tka~g~AAQsGIp~~~kla~k~G~~vlvf~dL~DAlev---L~P~v~l-l~ 80 (147)
T COG4080 8 HNVSSVQRV-LEFARIAYG--FGAKRLVLTKAKGSAAQSGIPEVLKLAFKLGKPVLVFPDLDDALEV---LRPDVTL-LV 80 (147)
T ss_pred ecCCchHHH-HHHHHHHcc--cCccEEEEEecccHhhhhccHHHHHHHHHhCCcEEEehhHHHHHHh---cCCceEE-Ee
Confidence 455444443 334444443 468999999994 44445 6668899999999999999864 3334543 44
Q ss_pred c
Q 025987 85 G 85 (245)
Q Consensus 85 G 85 (245)
|
T Consensus 81 ~ 81 (147)
T COG4080 81 G 81 (147)
T ss_pred c
Confidence 4
No 92
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=33.65 E-value=2.4e+02 Score=26.54 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=69.4
Q ss_pred HHHHHcCCCeee-cccHHHHHHhhcC-CC-CCceeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCC
Q 025987 50 RQVYDAGHRSFG-ENYVQEIVDKAPQ-LP-EDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGR 126 (245)
Q Consensus 50 ~~~~~~G~~~~~-va~~~Ea~~lr~~-~~-~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~ 126 (245)
+.+++.|++.+= .|+-...-+.|+. +. .|+ .+|.++--++..-. ..-....+..+..+.+.+.|+ .|+
T Consensus 84 ~~A~~~GADtiMDLStGgdl~~iR~~il~~s~v---pvGTVPiYqa~~~~-----~~~~~~mt~d~~~~~ie~qa~-dGV 154 (423)
T TIGR00190 84 LIAIKYGADTVMDLSTGGDLDEIRKAILDAVPV---PVGTVPIYQAAEKV-----HGAVEDMDEDDMFRAIEKQAK-DGV 154 (423)
T ss_pred HHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCC---CccCccHHHHHHHh-----cCChhhCCHHHHHHHHHHHHH-hCC
Confidence 345678998643 3444444445666 33 243 44777653332211 122234566677788888876 354
Q ss_pred CCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC---CC----CCcHHHHHHHHHHHHHHHHHh
Q 025987 127 KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DY----TSTPENFRTLLNCRAEVCKAL 199 (245)
Q Consensus 127 ~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~---~~----~~~~~~~~~~~~~~~~l~~~~ 199 (245)
+ ++-|-+| +. .+.++.++ +.+ ++.||.|-.+. .+ ......++.|.++.+.+++ |
T Consensus 155 ---D-fmTiH~G-------i~----~~~~~~~~-~~~--R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~-y 215 (423)
T TIGR00190 155 ---D-FMTIHAG-------VL----LEYVERLK-RSG--RITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKE-Y 215 (423)
T ss_pred ---C-EEEEccc-------hh----HHHHHHHH-hCC--CccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHH-h
Confidence 3 2455565 43 23456666 444 78888887663 11 1223355566666666666 4
Q ss_pred CCCCCCCeeecc
Q 025987 200 GMAEDQCELSMG 211 (245)
Q Consensus 200 g~~~~~~~~S~g 211 (245)
. ..+|.|
T Consensus 216 D-----VtlSLG 222 (423)
T TIGR00190 216 D-----VTLSLG 222 (423)
T ss_pred C-----eeeecc
Confidence 3 346776
No 93
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.56 E-value=3.6e+02 Score=24.00 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=36.6
Q ss_pred EecccChHHHHHHHHcCCCeeec-----ccHHHHHHhhcCCCCCceeeeeccCChHHHHHHHc
Q 025987 40 VSKTKPVSLIRQVYDAGHRSFGE-----NYVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLG 97 (245)
Q Consensus 40 VvKaHg~~~i~~~~~~G~~~~~v-----a~~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~ 97 (245)
-+-.|..+++.++.++|+|++.+ ..+.++..+.+.....+.+...|.+..+.+.+++.
T Consensus 200 ~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~ 262 (288)
T PRK07428 200 EVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAE 262 (288)
T ss_pred EEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHH
Confidence 34557777777777888887544 44555555433222334446778888888888774
No 94
>PRK08005 epimerase; Validated
Probab=32.12 E-value=3.1e+02 Score=23.15 Aligned_cols=166 Identities=13% Similarity=0.074 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCCeeec--------c----cHHHHHHhhcCCCCCceeeeeccCChHHHHHHHccCCCcc-EEEeeCCHHH
Q 025987 47 SLIRQVYDAGHRSFGE--------N----YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLD-MVEGVGNEKI 113 (245)
Q Consensus 47 ~~i~~~~~~G~~~~~v--------a----~~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~~~~~~-l~~~v~s~~~ 113 (245)
+.++.+.++|++++=+ - -++.-..+|+....|+-.|++-.-+.+.++.+++. ..+ +++-+.+...
T Consensus 17 ~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~--gad~It~H~Ea~~~ 94 (210)
T PRK08005 17 EALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAI--RPGWIFIHAESVQN 94 (210)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHh--CCCEEEEcccCccC
Confidence 3455666677664211 1 12233345554333433366554445556666631 233 3332332223
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC--CCCCcHHHHHHHHHH
Q 025987 114 ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--DYTSTPENFRTLLNC 191 (245)
Q Consensus 114 a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~--~~~~~~~~~~~~~~~ 191 (245)
..++-+..++.|. +.. |-+|-+ .+.+.+..+ +. .+...=+||.-+- +..+....+++..++
T Consensus 95 ~~~~l~~Ik~~G~-k~G--lAlnP~-------Tp~~~i~~~---l~----~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l 157 (210)
T PRK08005 95 PSEILADIRAIGA-KAG--LALNPA-------TPLLPYRYL---AL----QLDALMIMTSEPDGRGQQFIAAMCEKVSQS 157 (210)
T ss_pred HHHHHHHHHHcCC-cEE--EEECCC-------CCHHHHHHH---HH----hcCEEEEEEecCCCccceecHHHHHHHHHH
Confidence 3344445566676 444 345544 122333332 22 3456667888763 334555666777665
Q ss_pred HHHHHHHhCCCCCCCeeeccCcc-cHHHHHHcCCCeeeeCccccCCC
Q 025987 192 RAEVCKALGMAEDQCELSMGMSG-DFEQAIEMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 192 ~~~l~~~~g~~~~~~~~S~g~s~-~~~~~~~~~~d~VR~G~~lyG~~ 237 (245)
.+...+ .. ..+-.|.+. +.+...+.|.|.+=.|+++|+..
T Consensus 158 ~~~~~~---~~---I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~ 198 (210)
T PRK08005 158 REHFPA---AE---CWADGGITLRAARLLAAAGAQHLVIGRALFTTA 198 (210)
T ss_pred HHhccc---CC---EEEECCCCHHHHHHHHHCCCCEEEEChHhhCCC
Confidence 443321 11 223344432 23344578999999999999843
No 95
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=32.04 E-value=2.4e+02 Score=23.90 Aligned_cols=59 Identities=5% Similarity=-0.141 Sum_probs=29.6
Q ss_pred EEEEEecccChHHHHHHHHcCCCeeecccHH------------HHH-HhhcCCCCCceeeeeccCChHHHHHHH
Q 025987 36 RVVAVSKTKPVSLIRQVYDAGHRSFGENYVQ------------EIV-DKAPQLPEDIKWHFVGHLQSNKAKTLL 96 (245)
Q Consensus 36 ~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~------------Ea~-~lr~~~~~~i~~~~lG~~~~~~~~~~~ 96 (245)
.+++++=.|....+..+.+.|+|+++++-+. |.. .+++....|+ ..||.+.++.+..+.
T Consensus 111 ~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPv--vAIGGI~~~n~~~~~ 182 (221)
T PRK06512 111 MIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPC--IVQAGSDLASAVEVA 182 (221)
T ss_pred CEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCE--EEEeCCCHHHHHHHH
Confidence 4556552244444444556777777765442 111 1112222343 556666666666665
No 96
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=31.66 E-value=3.4e+02 Score=23.49 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=93.0
Q ss_pred CCcEEEEEecc----cCh-------HHH-HHHHHcCCCeeec--------ccHHHHHHhhcCCCCCceeeeeccCChHHH
Q 025987 33 EQIRVVAVSKT----KPV-------SLI-RQVYDAGHRSFGE--------NYVQEIVDKAPQLPEDIKWHFVGHLQSNKA 92 (245)
Q Consensus 33 ~~~~l~aVvKa----Hg~-------~~i-~~~~~~G~~~~~v--------a~~~Ea~~lr~~~~~~i~~~~lG~~~~~~~ 92 (245)
+++.++|=+|. .|. ... +...+.|++.+.| .+++.....|+....||..-- =.+.+.++
T Consensus 48 ~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kd-fi~~~~qi 126 (260)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKD-FIIDPYQI 126 (260)
T ss_pred CCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeee-ecCCHHHH
Confidence 34788898988 232 333 5556789999999 888888888887666641111 12445567
Q ss_pred HHHHccCCCccEEEe---eCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeE
Q 025987 93 KTLLGGVPNLDMVEG---VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 169 (245)
Q Consensus 93 ~~~~~~~~~~~l~~~---v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~G 169 (245)
..+... ..|.+.. .-+.+.++.+-+.+.+.|. .+.+.+.+- +|+ +... ++ +..+.|
T Consensus 127 ~~a~~~--GAD~VlLi~~~l~~~~l~~li~~a~~lGl---~~lvevh~~----------~E~----~~A~-~~-gadiIg 185 (260)
T PRK00278 127 YEARAA--GADAILLIVAALDDEQLKELLDYAHSLGL---DVLVEVHDE----------EEL----ERAL-KL-GAPLIG 185 (260)
T ss_pred HHHHHc--CCCEEEEEeccCCHHHHHHHHHHHHHcCC---eEEEEeCCH----------HHH----HHHH-Hc-CCCEEE
Confidence 666531 2454433 3345678888888887765 454444442 333 2222 22 456766
Q ss_pred eeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeee-ccC-ccc-HHHHHHcCCCeeeeCccccCC
Q 025987 170 LMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELS-MGM-SGD-FEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 170 l~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S-~g~-s~~-~~~~~~~~~d~VR~G~~lyG~ 236 (245)
+ | ..|-......++.+.+ +... ++.....++ +|. |+. .......|+|.|=+|++|...
T Consensus 186 i--n-~rdl~~~~~d~~~~~~----l~~~--~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 186 I--N-NRNLKTFEVDLETTER----LAPL--IPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred E--C-CCCcccccCCHHHHHH----HHHh--CCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 5 2 2111100001333333 2221 111113344 332 222 223346789999999999874
No 97
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=31.29 E-value=84 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc-cChHHHHHHHHcCCCeeec
Q 025987 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT-KPVSLIRQVYDAGHRSFGE 62 (245)
Q Consensus 12 ~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa-Hg~~~i~~~~~~G~~~~~v 62 (245)
.+++.|++.+ ++-+|+.+|- | ..+++.+.++|+|.+..
T Consensus 57 ~~I~~I~~~V------------~iPVig~~kigh-~~Ea~~L~~~GvDiIDe 95 (287)
T TIGR00343 57 KMIKEIMDAV------------SIPVMAKVRIGH-FVEAQILEALGVDYIDE 95 (287)
T ss_pred HHHHHHHHhC------------CCCEEEEeeccH-HHHHHHHHHcCCCEEEc
Confidence 4566666655 4789999998 6 66788889999999853
No 98
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.88 E-value=3.8e+02 Score=23.70 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=43.2
Q ss_pred ccChHHHHHHHHcCCCeeeccc--HHHHHHhhcCCCCCceeeeeccCChHHHHHHHccCCCccEEEeeCCH
Q 025987 43 TKPVSLIRQVYDAGHRSFGENY--VQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNE 111 (245)
Q Consensus 43 aHg~~~i~~~~~~G~~~~~va~--~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~ 111 (245)
.|..+++..+.+.|+|+++.-. +++..+.++.+..|+....+|.+..+.+..+++. ..+. +++.++
T Consensus 195 v~tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~--Gvd~-IAvg~l 262 (277)
T PRK08072 195 TETEEQVREAVAAGADIIMFDNRTPDEIREFVKLVPSAIVTEASGGITLENLPAYGGT--GVDY-ISLGFL 262 (277)
T ss_pred eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHc--CCCE-EEEChh
Confidence 4787888777889999987753 4444444444444554467899999999988841 2444 344544
No 99
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.60 E-value=3.2e+02 Score=24.13 Aligned_cols=19 Identities=0% Similarity=0.060 Sum_probs=13.1
Q ss_pred cChHHHHHHH-HcCCCeeec
Q 025987 44 KPVSLIRQVY-DAGHRSFGE 62 (245)
Q Consensus 44 Hg~~~i~~~~-~~G~~~~~v 62 (245)
|..+.++.+. +.|+|++|+
T Consensus 153 t~~eea~~f~~~tg~DyLAv 172 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAV 172 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEE
Confidence 5566665554 458888888
No 100
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=29.54 E-value=3.7e+02 Score=23.33 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=20.7
Q ss_pred EEEEecccChHHHHHHHHcCCCeeeccc
Q 025987 37 VVAVSKTKPVSLIRQVYDAGHRSFGENY 64 (245)
Q Consensus 37 l~aVvKaHg~~~i~~~~~~G~~~~~va~ 64 (245)
+-+++=.|..+++..+.++|++.+|++.
T Consensus 161 l~~lvevh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 161 LDVLVEVHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred CeEEEEeCCHHHHHHHHHcCCCEEEECC
Confidence 5566666887777667788888888775
No 101
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=29.49 E-value=90 Score=27.81 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc-cChHHHHHHHHcCCCeee
Q 025987 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT-KPVSLIRQVYDAGHRSFG 61 (245)
Q Consensus 12 ~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa-Hg~~~i~~~~~~G~~~~~ 61 (245)
.|++.|++.+ ++-+++.+|- | ..++..+.++|++.+.
T Consensus 55 ~~I~~Ik~~V------------~iPVIGi~K~~~-~~Ea~~L~eaGvDiID 92 (283)
T cd04727 55 KMIKEIMDAV------------SIPVMAKVRIGH-FVEAQILEALGVDMID 92 (283)
T ss_pred HHHHHHHHhC------------CCCeEEeeehhH-HHHHHHHHHcCCCEEe
Confidence 4666666665 4789999998 6 6678888999999985
No 102
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=28.79 E-value=2.9e+02 Score=24.21 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=59.6
Q ss_pred CCcEEEEEecc----cC-------hHHH-HHHHHcCCCeeeccc--------HHHHHHhhcCCCCCceeeee-ccCChHH
Q 025987 33 EQIRVVAVSKT----KP-------VSLI-RQVYDAGHRSFGENY--------VQEIVDKAPQLPEDIKWHFV-GHLQSNK 91 (245)
Q Consensus 33 ~~~~l~aVvKa----Hg-------~~~i-~~~~~~G~~~~~va~--------~~Ea~~lr~~~~~~i~~~~l-G~~~~~~ 91 (245)
.+..++|=+|- .| ...+ +...+.|+.++.|=| .+-....|+....|+ +.= -.+++-+
T Consensus 44 ~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~Pv--L~KDFiiD~yQ 121 (254)
T COG0134 44 GKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPV--LRKDFIIDPYQ 121 (254)
T ss_pred CCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCe--eeccCCCCHHH
Confidence 46789999887 44 1223 334466899988866 344444445544453 110 1145556
Q ss_pred HHHHHccCCCcc---EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC
Q 025987 92 AKTLLGGVPNLD---MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS 138 (245)
Q Consensus 92 ~~~~~~~~~~~~---l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG 138 (245)
+.++... ..| ++..+=+.+.++.|.+.|.+.|. .|+++|..-
T Consensus 122 I~~Ar~~--GADavLLI~~~L~~~~l~el~~~A~~LGm---~~LVEVh~~ 166 (254)
T COG0134 122 IYEARAA--GADAVLLIVAALDDEQLEELVDRAHELGM---EVLVEVHNE 166 (254)
T ss_pred HHHHHHc--CcccHHHHHHhcCHHHHHHHHHHHHHcCC---eeEEEECCH
Confidence 6555310 123 55556677788899999998875 788888764
No 103
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=28.73 E-value=3.8e+02 Score=23.01 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=49.8
Q ss_pred HHHHHHcCCCee--ecccH--HH--H-HHhhcCCCCCceeeeeccCChHHHHHHHcc-CCCccEEEeeCCH---------
Q 025987 49 IRQVYDAGHRSF--GENYV--QE--I-VDKAPQLPEDIKWHFVGHLQSNKAKTLLGG-VPNLDMVEGVGNE--------- 111 (245)
Q Consensus 49 i~~~~~~G~~~~--~va~~--~E--a-~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~-~~~~~l~~~v~s~--------- 111 (245)
++.+.++|++.+ |+-.. ++ . ..+++.. .+..+..+.....+.++.+.+. ++..++..+++..
T Consensus 26 ~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~-~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~ 104 (259)
T cd07939 26 ARALDEAGVDEIEVGIPAMGEEEREAIRAIVALG-LPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKD 104 (259)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCC
Confidence 355667888875 33222 22 2 2222221 2232234455567777776642 1112233333332
Q ss_pred -----HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcC
Q 025987 112 -----KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (245)
Q Consensus 112 -----~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~ 162 (245)
+.+...-+.+++.|. .+. ++.-. .+| .+++.+.++++.+. +.
T Consensus 105 ~~~~~~~~~~~i~~a~~~G~-~v~----~~~~~-~~~--~~~~~~~~~~~~~~-~~ 151 (259)
T cd07939 105 RAWVLDQLRRLVGRAKDRGL-FVS----VGAED-ASR--ADPDFLIEFAEVAQ-EA 151 (259)
T ss_pred HHHHHHHHHHHHHHHHHCCC-eEE----Eeecc-CCC--CCHHHHHHHHHHHH-HC
Confidence 223344456666665 433 32211 233 46788888888887 55
No 104
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=28.67 E-value=2.6e+02 Score=25.76 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=45.7
Q ss_pred eeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC
Q 025987 107 GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 176 (245)
Q Consensus 107 ~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~ 176 (245)
+||=.-.++++++.++-+|+ -+.+| +|- +|--+.-| .+.++++.++ .+|++.+..+.||.-.
T Consensus 140 ~Vd~eyLl~w~~kVa~~Kgk-glEaH--lDG---qGEP~lYP-~l~~lVqalk-~~~~v~vVSmQTng~~ 201 (414)
T COG2100 140 VVDPEYLLEWFEKVARFKGK-GLEAH--LDG---QGEPLLYP-HLVDLVQALK-EHKGVEVVSMQTNGVL 201 (414)
T ss_pred EecHHHHHHHHHHHHhhhCC-CeEEE--ecC---CCCCccch-hHHHHHHHHh-cCCCceEEEEeeCcee
Confidence 34444556889999888787 66655 553 55445444 5788999999 9999999999999864
No 105
>PRK14057 epimerase; Provisional
Probab=28.56 E-value=4e+02 Score=23.30 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=45.9
Q ss_pred CeeEeEeeeeCCC--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCccc-HHHHHHcCCCeeeeCccccCC
Q 025987 164 NLEFSGLMTIGMP--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 164 ~l~l~Gl~TH~a~--~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~-~~~~~~~~~d~VR~G~~lyG~ 236 (245)
.+...=+||--+- ...+....+++..++.+.+.++ |++. ...+-.|.+.. .+...+.|.|.+=.|+++|+.
T Consensus 154 ~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~-~~~~-~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~ 227 (254)
T PRK14057 154 DVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDK-REGK-IIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRD 227 (254)
T ss_pred hCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhc-CCCc-eEEEECCCCHHHHHHHHHCCCCEEEEChHhhCC
Confidence 3556667887763 3346667888888887777663 6542 12223444432 334457899999999999984
No 106
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=28.22 E-value=1.5e+02 Score=26.27 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=13.7
Q ss_pred cChHHHHHHHH-cCCCeeecc
Q 025987 44 KPVSLIRQVYD-AGHRSFGEN 63 (245)
Q Consensus 44 Hg~~~i~~~~~-~G~~~~~va 63 (245)
|..+++..+.+ .|+|+++++
T Consensus 153 t~~eea~~f~~~tgvD~Lavs 173 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAA 173 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeec
Confidence 55666666654 788888865
No 107
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=27.61 E-value=4.6e+02 Score=23.74 Aligned_cols=81 Identities=9% Similarity=0.089 Sum_probs=48.3
Q ss_pred cChHHHHHHHHcCCCeeecccHH--------------------------HHHHhhcCCCCCceeee-eccCChHHHHHHH
Q 025987 44 KPVSLIRQVYDAGHRSFGENYVQ--------------------------EIVDKAPQLPEDIKWHF-VGHLQSNKAKTLL 96 (245)
Q Consensus 44 Hg~~~i~~~~~~G~~~~~va~~~--------------------------Ea~~lr~~~~~~i~~~~-lG~~~~~~~~~~~ 96 (245)
.|+..+..|..+|+..|.+-.-+ .|.+..+.+...+.... ...+.++.+..++
T Consensus 35 lGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~ 114 (338)
T PRK12475 35 LGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV 114 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh
Confidence 66777778888998776643322 22222222333332222 2445566777777
Q ss_pred ccCCCccEEEe-eCCHHHHHHHHHHHHhcCCCC
Q 025987 97 GGVPNLDMVEG-VGNEKIANHLDKAVSNLGRKP 128 (245)
Q Consensus 97 ~~~~~~~l~~~-v~s~~~a~~l~~~a~~~~~~~ 128 (245)
. .+|+++. .|+.+.-..+++.+.+.++ |
T Consensus 115 ~---~~DlVid~~D~~~~r~~in~~~~~~~i-p 143 (338)
T PRK12475 115 K---EVDLIIDATDNFDTRLLINDLSQKYNI-P 143 (338)
T ss_pred c---CCCEEEEcCCCHHHHHHHHHHHHHcCC-C
Confidence 3 5775554 5777776789999988876 5
No 108
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=27.48 E-value=3.3e+02 Score=25.75 Aligned_cols=131 Identities=10% Similarity=0.165 Sum_probs=72.1
Q ss_pred HHHHHcCCCeee-cccHHHHHHhhcC-CCC-CceeeeeccCCh-HHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcC
Q 025987 50 RQVYDAGHRSFG-ENYVQEIVDKAPQ-LPE-DIKWHFVGHLQS-NKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLG 125 (245)
Q Consensus 50 ~~~~~~G~~~~~-va~~~Ea~~lr~~-~~~-~i~~~~lG~~~~-~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~ 125 (245)
+.+++.|++.+= .|+-...-+.|+. +.. |+ .+|.++- +-+.+..+ +..-...++..+..+.+.+.|+ .|
T Consensus 84 ~~A~~~GADtiMDLStggdl~~iR~~il~~s~v---pvGTVPiYqa~~~~~~---k~~~~~~mt~d~~~~~ie~qa~-~G 156 (431)
T PRK13352 84 KVAVKYGADTIMDLSTGGDLDEIRRAIIEASPV---PVGTVPIYQAAVEAAR---KYGSVVDMTEDDLFDVIEKQAK-DG 156 (431)
T ss_pred HHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCC---CCcChhHHHHHHHHHh---cCCChhhCCHHHHHHHHHHHHH-hC
Confidence 345678998643 3444444445666 322 33 3476764 23333332 2344455677788888888876 35
Q ss_pred CCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC---CC----CCcHHHHHHHHHHHHHHHHH
Q 025987 126 RKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP---DY----TSTPENFRTLLNCRAEVCKA 198 (245)
Q Consensus 126 ~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~---~~----~~~~~~~~~~~~~~~~l~~~ 198 (245)
+ + ++-|-+| +. .+.++.++ +.+ ++.||.|-.+. .+ ......++.|.++.+.+++
T Consensus 157 V---D-fmTiHcG-------i~----~~~~~~~~-~~~--R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~- 217 (431)
T PRK13352 157 V---D-FMTIHCG-------VT----RETLERLK-KSG--RIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKE- 217 (431)
T ss_pred C---C-EEEEccc-------hh----HHHHHHHH-hcC--CccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHH-
Confidence 4 3 2445555 43 23456666 443 78888887663 11 1223355566666666666
Q ss_pred hCCCCCCCeeecc
Q 025987 199 LGMAEDQCELSMG 211 (245)
Q Consensus 199 ~g~~~~~~~~S~g 211 (245)
|. ..+|.|
T Consensus 218 yD-----VtlSLG 225 (431)
T PRK13352 218 YD-----VTLSLG 225 (431)
T ss_pred hC-----eeeecc
Confidence 43 346776
No 109
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.16 E-value=4.5e+02 Score=23.37 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEE---EEEecc------------cChHHHHHH-HHcCCCeeeccc
Q 025987 10 AVTALRSVLHRVRQAAERSGRTQEQIRV---VAVSKT------------KPVSLIRQV-YDAGHRSFGENY 64 (245)
Q Consensus 10 l~~Nl~~i~~~i~~~~~~~~~~~~~~~l---~aVvKa------------Hg~~~i~~~-~~~G~~~~~va~ 64 (245)
+.+|++.-++-++.+ ..+ ++.+ ++.+.. -..+.+..+ .+.|+|.|+|+-
T Consensus 110 ~eeNi~~T~~vve~A-h~~-----gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvai 174 (283)
T PRK07998 110 FEENIAFTKEAVDFA-KSY-----GVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSI 174 (283)
T ss_pred HHHHHHHHHHHHHHH-HHc-----CCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhc
Confidence 667888777765443 332 3322 445533 122445444 467888888765
No 110
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=26.90 E-value=1.2e+02 Score=25.89 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----------cChHHHHHHHHcCCCeeec
Q 025987 12 TALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----------KPVSLIRQVYDAGHRSFGE 62 (245)
Q Consensus 12 ~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----------Hg~~~i~~~~~~G~~~~~v 62 (245)
+|++.++..+ ++-+++++|- --...+..+.++|++-+|+
T Consensus 56 ~dIkai~~~v------------~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~ 104 (229)
T COG3010 56 EDIKAIRAVV------------DVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAF 104 (229)
T ss_pred hhHHHHHhhC------------CCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEe
No 111
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=26.70 E-value=2.9e+02 Score=26.52 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=45.8
Q ss_pred cEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC--CcccCChhhHHHHHHHHHhcCCC
Q 025987 103 DMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE--SKSGIDPSSCLGIVEHVRLRCPN 164 (245)
Q Consensus 103 ~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m--~R~G~~~~e~~~~~~~i~~~~~~ 164 (245)
++.+.=+|.+.|+.+.+++.+... .-+|.|..--|++. +++|.+++.+.+.++.+. ...+
T Consensus 3 ~iviVSHs~~la~g~~~l~~qm~~-~~~v~i~~agG~~d~~~~~Gt~~~~i~~ai~~~~-~~~g 64 (473)
T PRK11377 3 NLVIVSHSARLGEGVGELARQMLM-SDGCKLAIAAGIDDPQNPIGTDAVKVMEAIESVA-DADH 64 (473)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcC-CCCceEEEecCCCCCCCCCCCCHHHHHHHHHhcc-CCCC
Confidence 566777899999999999987632 22677777777666 899999988888888876 5444
No 112
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.47 E-value=79 Score=24.96 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=26.1
Q ss_pred CCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEe--eeeCC
Q 025987 137 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL--MTIGM 175 (245)
Q Consensus 137 tG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl--~TH~a 175 (245)
-|.-|-++|+.|+++.++++++. .+ ++.|+ |.+|.
T Consensus 93 GGLaMP~~gv~~d~~kel~ee~~--~k--kliGvCfm~mF~ 129 (154)
T COG4090 93 GGLAMPKIGVTPDDAKELLEELG--NK--KLIGVCFMNMFE 129 (154)
T ss_pred cccccCcCCCCHHHHHHHHHhcC--CC--ceEEeeHHHHHH
Confidence 34559999999999999988764 22 78888 44554
No 113
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.95 E-value=5e+02 Score=23.48 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEE--ec----ccChH---HH-HHHHHcCCCeeecccH-----------H
Q 025987 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAV--SK----TKPVS---LI-RQVYDAGHRSFGENYV-----------Q 66 (245)
Q Consensus 8 ~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aV--vK----aHg~~---~i-~~~~~~G~~~~~va~~-----------~ 66 (245)
..+.+..+.+.+-++.+++.++..+=.+++-+. +. ....+ .+ +.+.+.|++++-|+.- +
T Consensus 196 GslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~ 275 (338)
T cd02933 196 GSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPD 275 (338)
T ss_pred CcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchH
Confidence 447788888899999888888742211222111 00 01212 23 5566789999988432 2
Q ss_pred HHHHhhcCCCCCceeeeeccCChHHHHHHHc
Q 025987 67 EIVDKAPQLPEDIKWHFVGHLQSNKAKTLLG 97 (245)
Q Consensus 67 Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~ 97 (245)
-+..+|+....|+ ...|.+.++.++.+++
T Consensus 276 ~~~~ik~~~~ipv--i~~G~i~~~~a~~~l~ 304 (338)
T cd02933 276 FLDFLRKAFKGPL--IAAGGYDAESAEAALA 304 (338)
T ss_pred HHHHHHHHcCCCE--EEECCCCHHHHHHHHH
Confidence 2333344443343 3445555666666653
No 114
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.75 E-value=3.5e+02 Score=23.71 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=7.8
Q ss_pred eeeccCChHHHHHHH
Q 025987 82 HFVGHLQSNKAKTLL 96 (245)
Q Consensus 82 ~~lG~~~~~~~~~~~ 96 (245)
..+|.+.++.+..++
T Consensus 230 ~AiGGI~~~ni~~~a 244 (268)
T cd01572 230 EASGGITLENIRAYA 244 (268)
T ss_pred EEECCCCHHHHHHHH
Confidence 445555555555554
No 115
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=25.62 E-value=3.8e+02 Score=22.09 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=88.6
Q ss_pred CcEEEEEecc----cC-------hHH-HHHHHHcCCCeeecc--------cHHHHHHhhcCCCCCceeeeecc-CChHHH
Q 025987 34 QIRVVAVSKT----KP-------VSL-IRQVYDAGHRSFGEN--------YVQEIVDKAPQLPEDIKWHFVGH-LQSNKA 92 (245)
Q Consensus 34 ~~~l~aVvKa----Hg-------~~~-i~~~~~~G~~~~~va--------~~~Ea~~lr~~~~~~i~~~~lG~-~~~~~~ 92 (245)
++.++|=+|- .| ... ++.+.+.|++++-|. .++.....|+....|| .+.|. ..+..+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi--~~~~~i~~~~~v 87 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPV--LRKDFIIDPYQI 87 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCE--EECCeecCHHHH
Confidence 5788898888 22 223 366678999999996 6666666776655565 33333 445577
Q ss_pred HHHHccCCCccEEE---eeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeE
Q 025987 93 KTLLGGVPNLDMVE---GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 169 (245)
Q Consensus 93 ~~~~~~~~~~~l~~---~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~G 169 (245)
+.+.+. ..+.++ +..+.+.++.+.+.+...|. .+ .+++. .++++ +.+. ++ +..+.|
T Consensus 88 ~~~~~~--Gad~v~l~~~~~~~~~~~~~~~~~~~~g~---~~--~v~v~--------~~~e~----~~~~-~~-g~~~i~ 146 (217)
T cd00331 88 YEARAA--GADAVLLIVAALDDEQLKELYELARELGM---EV--LVEVH--------DEEEL----ERAL-AL-GAKIIG 146 (217)
T ss_pred HHHHHc--CCCEEEEeeccCCHHHHHHHHHHHHHcCC---eE--EEEEC--------CHHHH----HHHH-Hc-CCCEEE
Confidence 777642 234332 22344666666666665554 22 33332 22332 3333 33 233434
Q ss_pred eeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCee-eccCcc--cHHHHHHcCCCeeeeCccccCCC
Q 025987 170 LMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCEL-SMGMSG--DFEQAIEMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 170 l~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~-S~g~s~--~~~~~~~~~~d~VR~G~~lyG~~ 237 (245)
+ + +.+.......++.+ ..+++. ++...+.+ +.|.+. +.......|.+-|=+|++||...
T Consensus 147 ~--t-~~~~~~~~~~~~~~----~~l~~~--~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~ 208 (217)
T cd00331 147 I--N-NRDLKTFEVDLNTT----ERLAPL--IPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAP 208 (217)
T ss_pred E--e-CCCccccCcCHHHH----HHHHHh--CCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 3 2 22211111112223 234332 11112334 445432 33444567899999999999743
No 116
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.24 E-value=2.3e+02 Score=22.76 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=25.9
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEee
Q 025987 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 171 (245)
Q Consensus 104 l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~ 171 (245)
+...++..+.+..+-+.+.+.+. ++-+ +|-+++.+..+.+.+.+.+|++++.|.+
T Consensus 27 ~~~rv~g~dl~~~l~~~~~~~~~-~ifl------------lG~~~~~~~~~~~~l~~~yP~l~ivg~~ 81 (172)
T PF03808_consen 27 LPERVTGSDLFPDLLRRAEQRGK-RIFL------------LGGSEEVLEKAAANLRRRYPGLRIVGYH 81 (172)
T ss_pred CCcccCHHHHHHHHHHHHHHcCC-eEEE------------EeCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 33445555555555554444433 2222 1223444455555554355666665554
No 117
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.07 E-value=4.6e+02 Score=22.85 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=39.3
Q ss_pred cccChHHHHHHHHcCCCeeecc-----cHHHHHHhhcCCCCCceeeeeccCChHHHHHHHccCCCccEEEeeCCH
Q 025987 42 KTKPVSLIRQVYDAGHRSFGEN-----YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNE 111 (245)
Q Consensus 42 KaHg~~~i~~~~~~G~~~~~va-----~~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~ 111 (245)
=.|..+++..++++|+|++++- .+.++.+..+.. .++.+...|.+.++.+..+++ ...+.+. +.++
T Consensus 187 ev~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~--~Gad~Is-vgal 257 (269)
T cd01568 187 EVETLEEAEEALEAGADIIMLDNMSPEELKEAVKLLKGL-PRVLLEASGGITLENIRAYAE--TGVDVIS-TGAL 257 (269)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHH--cCCCEEE-EcHH
Confidence 3467777777778899988773 334443332222 134446778888888888874 1245543 3443
No 118
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.06 E-value=3.5e+02 Score=23.97 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChh-hHHHHHH-HHHhcCCCeeEeEeeeeCCCC
Q 025987 110 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPS-SCLGIVE-HVRLRCPNLEFSGLMTIGMPD 177 (245)
Q Consensus 110 s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~-e~~~~~~-~i~~~~~~l~l~Gl~TH~a~~ 177 (245)
+..-+.-+-+.|.+.|. ++. |.||.+-.-.|.... -..-.++ -+. ++|+|++ |+.|++.+
T Consensus 142 ~~~~~~pi~~~a~~~gv-pv~----ihtG~~~~~~~~~~~~~~p~~~~~va~-~fP~l~I--Vl~H~G~~ 203 (293)
T COG2159 142 DDPRLYPIYEAAEELGV-PVV----IHTGAGPGGAGLEKGHSDPLYLDDVAR-KFPELKI--VLGHMGED 203 (293)
T ss_pred CChHHHHHHHHHHHcCC-CEE----EEeCCCCCCcccccCCCCchHHHHHHH-HCCCCcE--EEEecCCC
Confidence 34445567778888887 544 466643333332210 1122233 345 8999999 99999853
No 119
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=24.75 E-value=86 Score=29.38 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=28.0
Q ss_pred eCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccC
Q 025987 108 VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGI 146 (245)
Q Consensus 108 v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~ 146 (245)
+.+.+.++.+.+++.+.|. +=|.=+|-|| |+|+|=
T Consensus 201 ~~~~~fl~~lr~lCd~~g~--LLI~DEVQtG--~GRTGk 235 (404)
T COG4992 201 PAPPEFLKALRELCDEHGA--LLILDEVQTG--LGRTGK 235 (404)
T ss_pred CCCHHHHHHHHHHHHHhCe--EEEEeccccC--CCccch
Confidence 4788999999999998874 4455567799 999993
No 120
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=24.72 E-value=4.4e+02 Score=22.43 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=44.6
Q ss_pred CeeEeEeeeeCCC--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCccc-HHHHHHcCCCeeeeCccccCCC
Q 025987 164 NLEFSGLMTIGMP--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 164 ~l~l~Gl~TH~a~--~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~-~~~~~~~~~d~VR~G~~lyG~~ 237 (245)
.+...=+||--+- ...+....++++.++.+.+.+ .+.+. ...+-.|.+.. .+...+.|.|.+=.|+++|+..
T Consensus 132 ~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~-~~~~~-~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~ 206 (223)
T PRK08745 132 ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDA-LGKPI-RLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAP 206 (223)
T ss_pred hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHh-cCCCe-eEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCC
Confidence 3456667887763 334666777888877776665 35431 01223444322 3334567999999999999853
No 121
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=23.76 E-value=4.3e+02 Score=22.04 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=9.5
Q ss_pred HHHcCCC-eeecccHHHHHHh
Q 025987 52 VYDAGHR-SFGENYVQEIVDK 71 (245)
Q Consensus 52 ~~~~G~~-~~~va~~~Ea~~l 71 (245)
....|.. ..|+.+++|+.+-
T Consensus 100 ~~~~~~~~~~G~~t~~E~~~A 120 (206)
T PRK09140 100 AVALGMVVMPGVATPTEAFAA 120 (206)
T ss_pred HHHCCCcEEcccCCHHHHHHH
Confidence 3344433 3555555555443
No 122
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.23 E-value=4.4e+02 Score=21.95 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=82.0
Q ss_pred HHHHHHcCCCeeecc----cHHHHHHhhcC---CCCCceeeeeccCChHHHHHHHc-----cCCCccEEEeeCC------
Q 025987 49 IRQVYDAGHRSFGEN----YVQEIVDKAPQ---LPEDIKWHFVGHLQSNKAKTLLG-----GVPNLDMVEGVGN------ 110 (245)
Q Consensus 49 i~~~~~~G~~~~~va----~~~Ea~~lr~~---~~~~i~~~~lG~~~~~~~~~~~~-----~~~~~~l~~~v~s------ 110 (245)
++.+.++|++.+=+. +.++...+++. ... ..+..+.......++..++ ..+..++...+++
T Consensus 20 ~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~ 98 (237)
T PF00682_consen 20 AKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKN 98 (237)
T ss_dssp HHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHH
T ss_pred HHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHh
Confidence 356678888875444 23333333322 222 1123334455566666442 1222445555665
Q ss_pred --------HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCCCCCCcH
Q 025987 111 --------EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTP 182 (245)
Q Consensus 111 --------~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~~~~~ 182 (245)
++.+...-+.+++.|. .| .+.. +.-...+++++.++++.+. ++ +.....|.=.++. .+.
T Consensus 99 ~~~~~~~~~~~~~~~v~~ak~~g~---~v--~~~~---~~~~~~~~~~~~~~~~~~~-~~-g~~~i~l~Dt~G~---~~P 165 (237)
T PF00682_consen 99 LNKSREEALERIEEAVKYAKELGY---EV--AFGC---EDASRTDPEELLELAEALA-EA-GADIIYLADTVGI---MTP 165 (237)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHTTS---EE--EEEE---TTTGGSSHHHHHHHHHHHH-HH-T-SEEEEEETTS----S-H
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCC---ce--EeCc---cccccccHHHHHHHHHHHH-Hc-CCeEEEeeCccCC---cCH
Confidence 5666666667777765 33 2333 2223457788999999887 55 2333333322221 122
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCC-CeeeccCcc-cHHHHHHcCCCeeeeCccccCC
Q 025987 183 ENFRTLLNCRAEVCKALG-MAEDQ-CELSMGMSG-DFEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 183 ~~~~~~~~~~~~l~~~~g-~~~~~-~~~S~g~s~-~~~~~~~~~~d~VR~G~~lyG~ 236 (245)
.+ ..+++..+++.++ +...+ .|...|+.. ....+.+.|.+.|=....=+|.
T Consensus 166 ~~---v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~ 219 (237)
T PF00682_consen 166 ED---VAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE 219 (237)
T ss_dssp HH---HHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS
T ss_pred HH---HHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC
Confidence 33 3344445555433 22111 233355432 2335568899987655444443
No 123
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=23.22 E-value=2.1e+02 Score=25.44 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=13.7
Q ss_pred cChHHHHHHHHcCCCeeecc
Q 025987 44 KPVSLIRQVYDAGHRSFGEN 63 (245)
Q Consensus 44 Hg~~~i~~~~~~G~~~~~va 63 (245)
|..+.++.+.+.|+|++|++
T Consensus 154 t~peea~~f~~tgvD~LAv~ 173 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAG 173 (293)
T ss_pred CCHHHHHHHHHcCCCEEeec
Confidence 45566655557788888877
No 124
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.27 E-value=3.4e+02 Score=25.72 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCCCceEEEEEe---------------CCCCCCcccCChh---hHHHHHHHHHhcCCCeeEeEeeeeCC
Q 025987 114 ANHLDKAVSNLGRKPLKVLVQVN---------------TSGEESKSGIDPS---SCLGIVEHVRLRCPNLEFSGLMTIGM 175 (245)
Q Consensus 114 a~~l~~~a~~~~~~~~~V~lkid---------------tG~~m~R~G~~~~---e~~~~~~~i~~~~~~l~l~Gl~TH~a 175 (245)
|..++++-..+|+ +|++-+| .|.-..+-|+.|+ .++.+++..- ..++=.++++||-+-
T Consensus 241 At~IAEyFRDqG~---~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG-~~~~GsITafYTVLv 316 (441)
T COG1157 241 ATTIAEYFRDQGK---RVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAG-NGDKGSITAFYTVLV 316 (441)
T ss_pred HHHHHHHHHhCCC---eEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcC-CCCCCcEEEEEEEEe
Confidence 3445555566776 7888888 4544556688874 5667777665 344445999999998
Q ss_pred CCC
Q 025987 176 PDY 178 (245)
Q Consensus 176 ~~~ 178 (245)
..|
T Consensus 317 eGD 319 (441)
T COG1157 317 EGD 319 (441)
T ss_pred ecC
Confidence 633
No 125
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=21.89 E-value=1.7e+02 Score=19.38 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHH
Q 025987 110 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (245)
Q Consensus 110 s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~ 159 (245)
+.+++..|.+.+++.+. -.+++-+...+-=.|++++++.++.+.+.
T Consensus 22 ~~~~l~~la~ia~~yg~----~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 22 SAEQLRALAEIAEKYGD----GEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp EHHHHHHHHHHHHHHST----SEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC----CeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 56788888888887763 13445444324445667788888888775
No 126
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=21.85 E-value=2.2e+02 Score=21.36 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCCCcccCCh--hhHHHHHHHHHhcCCCeeEeEe-eeeCCCCCCCcHHHHHHH
Q 025987 130 KVLVQVNTSGEESKSGIDP--SSCLGIVEHVRLRCPNLEFSGL-MTIGMPDYTSTPENFRTL 188 (245)
Q Consensus 130 ~V~lkidtG~~m~R~G~~~--~e~~~~~~~i~~~~~~l~l~Gl-~TH~a~~~~~~~~~~~~~ 188 (245)
+|.|-||+. +++|+.+ +++.++.++.. ..+|+|-|. +-.|...++.+.+.+..|
T Consensus 22 kv~LIVNvA---s~Cg~t~qy~~L~~L~~ky~--~~gl~ILaFPcnqFg~QEp~~~~ei~~~ 78 (108)
T PF00255_consen 22 KVLLIVNVA---SKCGYTKQYKQLNELYEKYK--DKGLEILAFPCNQFGNQEPGSNEEIKEF 78 (108)
T ss_dssp SEEEEEEEE---SSSTTHHHHHHHHHHHHHHG--GGTEEEEEEEBSTTTTTTSSCHHHHHHH
T ss_pred CEEEEEecc---cccCCccccHHHHHHHHHHh--cCCeEEEeeehHHhccccCCCHHHHHHH
Confidence 577889996 8999987 34455555543 247998887 656664443444454444
No 127
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=21.83 E-value=6.2e+02 Score=23.12 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEE-----ecc-cChH----H-HHHHHHcCCCeeeccc
Q 025987 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAV-----SKT-KPVS----L-IRQVYDAGHRSFGENY 64 (245)
Q Consensus 8 ~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aV-----vKa-Hg~~----~-i~~~~~~G~~~~~va~ 64 (245)
..+++..+.+.+-++.+.+.++...=++++-+- .+. ...+ . ++.+.+.|++++-|+.
T Consensus 203 GslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 203 GSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 567888999999999999988742111122111 111 1112 2 2556678999998885
No 128
>PRK07877 hypothetical protein; Provisional
Probab=21.09 E-value=8.9e+02 Score=24.65 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=55.6
Q ss_pred CCcEEEEEecccChHHHHHHHHcCC------------------------CeeecccHHHHHHhhcCCCCCceeee-eccC
Q 025987 33 EQIRVVAVSKTKPVSLIRQVYDAGH------------------------RSFGENYVQEIVDKAPQLPEDIKWHF-VGHL 87 (245)
Q Consensus 33 ~~~~l~aVvKaHg~~~i~~~~~~G~------------------------~~~~va~~~Ea~~lr~~~~~~i~~~~-lG~~ 87 (245)
..+-|+++ ..|+..+..|..+|+ ..+|..+++-|.+....+...+.... -..+
T Consensus 108 ~~V~IvG~--GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGL--SVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEe--cHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 45667777 477766666777786 23445555555544444444332222 2556
Q ss_pred ChHHHHHHHccCCCccEEE-eeCCHHHHHHHHHHHHhcCC
Q 025987 88 QSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKAVSNLGR 126 (245)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~-~v~s~~~a~~l~~~a~~~~~ 126 (245)
.++.+..++. .+|+++ ..|+++.=-.|++.|.+.++
T Consensus 186 ~~~n~~~~l~---~~DlVvD~~D~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 186 TEDNVDAFLD---GLDVVVEECDSLDVKVLLREAARARRI 222 (722)
T ss_pred CHHHHHHHhc---CCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 6778888873 577554 46888766789999988876
No 129
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.03 E-value=5.3e+02 Score=22.06 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=43.9
Q ss_pred eeEeEeeeeCCC--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc-cHHHHHHcCCCeeeeCcc-ccCC
Q 025987 165 LEFSGLMTIGMP--DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG-DFEQAIEMGSTSVRIGST-IFGP 236 (245)
Q Consensus 165 l~l~Gl~TH~a~--~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~-~~~~~~~~~~d~VR~G~~-lyG~ 236 (245)
+...=+||.-+- ...+....+++..++.+.+.+ .|++. ...+-.|.+. +.+...+.|.|.+=.|++ +|+.
T Consensus 131 vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~-~~~~~-~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 131 LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRER-NGLEY-LIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHh-cCCCe-EEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCC
Confidence 446667887663 334667788888887777665 36541 1122344432 233445789999999964 9984
No 130
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=20.49 E-value=4.8e+02 Score=21.33 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCCeeec-----c-------cHHHHHHhhcCCCCCceeeeeccCChHHHHHHHccCCCccE--EEeeCCHH
Q 025987 47 SLIRQVYDAGHRSFGE-----N-------YVQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVPNLDM--VEGVGNEK 112 (245)
Q Consensus 47 ~~i~~~~~~G~~~~~v-----a-------~~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~~~~~~l--~~~v~s~~ 112 (245)
+.++.+.+.|++++.+ . .++.+.++++..+.++..+++..-..+.+..+.+ + ..+. .+...+ +
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~-~-g~d~v~vh~~~~-~ 96 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAK-A-GADIITFHVEAS-E 96 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH-c-CCCEEEEeeccc-h
Confidence 4456778889998777 2 2555666665443343234554433344555542 1 2444 222222 2
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC-C-CCCcHHHHHHHHH
Q 025987 113 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-D-YTSTPENFRTLLN 190 (245)
Q Consensus 113 ~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~-~-~~~~~~~~~~~~~ 190 (245)
......+..++.+. .+ -+.++ .+ .. .+.++.+. .. ..+.++++.++. + .......++.+.+
T Consensus 97 ~~~~~~~~~~~~~~-~~----g~~~~--~~------t~-~e~~~~~~-~~--~d~i~~~~~~~g~tg~~~~~~~~~~i~~ 159 (220)
T PRK05581 97 HIHRLLQLIKSAGI-KA----GLVLN--PA------TP-LEPLEDVL-DL--LDLVLLMSVNPGFGGQKFIPEVLEKIRE 159 (220)
T ss_pred hHHHHHHHHHHcCC-EE----EEEEC--CC------CC-HHHHHHHH-hh--CCEEEEEEECCCCCcccccHHHHHHHHH
Confidence 22233333444443 22 22222 10 11 22334443 22 235567776553 2 2223334455555
Q ss_pred HHHHHHHHhCCCCCCCeeeccCccc-HHHHHHcCCCeeeeCccccCCC
Q 025987 191 CRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 191 ~~~~l~~~~g~~~~~~~~S~g~s~~-~~~~~~~~~d~VR~G~~lyG~~ 237 (245)
+.+.... .++++ ...+-.|.+.. .....+.|.|.|=+|+++++..
T Consensus 160 ~~~~~~~-~~~~~-~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~ 205 (220)
T PRK05581 160 LRKLIDE-RGLDI-LIEVDGGINADNIKECAEAGADVFVAGSAVFGAP 205 (220)
T ss_pred HHHHHHh-cCCCc-eEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCC
Confidence 4433322 12211 11234565543 2233357899999999999853
No 131
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=20.27 E-value=6.9e+02 Score=23.05 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcC
Q 025987 29 GRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQ 74 (245)
Q Consensus 29 ~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~ 74 (245)
|-.+..+-.-...|.- ..++.+++.|+..|-+-+++|...+.+.
T Consensus 77 G~~~~~Iif~gp~K~~--~~l~~a~~~Gv~~i~vDS~~El~~i~~~ 120 (394)
T cd06831 77 GVSPENIIYTNPCKQA--SQIKYAAKVGVNIMTCDNEIELKKIARN 120 (394)
T ss_pred CCCcCCEEEeCCCCCH--HHHHHHHHCCCCEEEECCHHHHHHHHHh
Confidence 3334444444555542 4567778899999999999999987665
Done!