Query 025987
Match_columns 245
No_of_seqs 176 out of 1150
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 22:06:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r79_A Uncharacterized protein 100.0 7.4E-53 2.5E-57 363.1 20.1 220 9-242 5-227 (244)
2 3sy1_A UPF0001 protein YGGS; e 100.0 1.2E-52 4.1E-57 362.5 21.2 226 9-242 4-235 (245)
3 1ct5_A Protein (yeast hypothet 100.0 3.2E-51 1.1E-55 355.9 24.2 231 8-244 12-254 (256)
4 3cpg_A Uncharacterized protein 100.0 6.2E-44 2.1E-48 314.0 26.0 225 9-240 24-274 (282)
5 4ecl_A Serine racemase, vantg; 100.0 5.6E-40 1.9E-44 299.3 20.3 208 6-241 12-232 (374)
6 4a3q_A Alanine racemase 1; iso 100.0 4.9E-40 1.7E-44 300.2 18.7 208 6-240 14-231 (382)
7 3e5p_A Alanine racemase; ALR, 100.0 7.3E-40 2.5E-44 298.2 18.2 210 6-241 14-235 (371)
8 3mub_A Alanine racemase; alpha 100.0 8.4E-39 2.9E-43 290.8 22.0 207 6-241 14-231 (367)
9 3kw3_A Alanine racemase; niaid 100.0 4.1E-39 1.4E-43 293.5 16.9 207 6-241 26-243 (376)
10 3hur_A Alanine racemase; struc 100.0 1.3E-38 4.3E-43 291.8 19.9 205 6-241 15-237 (395)
11 2vd8_A Alanine racemase; pyrid 100.0 4.7E-38 1.6E-42 287.9 22.5 211 6-240 17-238 (391)
12 1vfs_A Alanine racemase; TIM-b 100.0 1.3E-37 4.3E-42 284.6 21.9 211 6-240 13-236 (386)
13 1xfc_A Alanine racemase; alpha 100.0 2.9E-37 1E-41 281.9 23.1 211 6-240 17-240 (384)
14 1bd0_A Alanine racemase; isome 100.0 2.9E-37 9.9E-42 282.5 22.4 210 6-239 13-230 (388)
15 3llx_A Predicted amino acid al 100.0 1.5E-37 5.1E-42 283.2 15.6 212 6-240 20-246 (376)
16 3gwq_A D-serine deaminase; str 100.0 6.1E-36 2.1E-40 276.9 21.3 217 6-238 52-286 (426)
17 2dy3_A Alanine racemase; alpha 100.0 1.1E-35 3.7E-40 269.3 20.3 208 6-240 9-226 (361)
18 3co8_A Alanine racemase; prote 100.0 3.8E-35 1.3E-39 267.7 21.3 205 6-240 15-234 (380)
19 2rjg_A Alanine racemase; alpha 100.0 1.9E-35 6.5E-40 269.7 18.4 203 6-240 29-241 (379)
20 1rcq_A Catabolic alanine racem 100.0 5.7E-35 2E-39 264.2 20.6 202 6-240 9-220 (357)
21 3anu_A D-serine dehydratase; P 100.0 2.6E-34 8.7E-39 261.3 13.4 215 6-239 18-250 (376)
22 2p3e_A Diaminopimelate decarbo 100.0 2.6E-31 9E-36 244.8 16.6 210 6-239 40-277 (420)
23 1twi_A Diaminopimelate decarbo 99.9 4E-26 1.4E-30 211.1 19.6 216 6-234 36-278 (434)
24 2qgh_A Diaminopimelate decarbo 99.9 9.8E-26 3.4E-30 208.2 18.2 210 6-235 39-273 (425)
25 2j66_A BTRK, decarboxylase; bu 99.9 3.4E-24 1.2E-28 197.8 20.2 209 6-235 23-257 (428)
26 2plj_A Lysine/ornithine decarb 99.9 3.6E-25 1.2E-29 204.3 12.5 203 6-236 61-283 (419)
27 2nva_A Arginine decarboxylase, 99.9 2.7E-25 9.1E-30 201.7 11.4 199 6-234 23-241 (372)
28 2o0t_A Diaminopimelate decarbo 99.9 8.1E-25 2.8E-29 204.4 13.5 212 6-236 48-294 (467)
29 1f3t_A ODC, ornithine decarbox 99.9 3.2E-23 1.1E-27 191.5 14.4 204 6-236 44-264 (425)
30 2yxx_A Diaminopimelate decarbo 99.9 5.8E-24 2E-28 193.8 8.6 198 6-235 19-241 (386)
31 3vab_A Diaminopimelate decarbo 99.9 3.5E-22 1.2E-26 185.5 20.8 187 6-212 55-260 (443)
32 3n2b_A Diaminopimelate decarbo 99.9 1.3E-21 4.6E-26 181.5 21.6 187 6-212 58-263 (441)
33 3btn_A Antizyme inhibitor 1; T 99.9 1.6E-21 5.6E-26 181.2 15.8 201 6-234 44-259 (448)
34 2oo0_A ODC, ornithine decarbox 99.9 4E-21 1.4E-25 179.7 16.3 204 6-236 54-274 (471)
35 1knw_A Diaminopimelate decarbo 99.8 4.2E-20 1.4E-24 170.5 14.0 178 6-212 32-226 (425)
36 7odc_A Protein (ornithine deca 99.8 2.9E-19 9.8E-24 165.1 18.6 179 6-212 44-236 (424)
37 3nzp_A Arginine decarboxylase; 99.7 6.9E-16 2.4E-20 148.0 22.0 198 6-211 51-272 (619)
38 3nzq_A ADC, biosynthetic argin 99.7 1.7E-15 5.7E-20 146.2 21.6 200 6-212 92-311 (666)
39 3n2o_A ADC, biosynthetic argin 99.7 6.8E-15 2.3E-19 141.6 19.9 200 6-212 70-294 (648)
40 3mt1_A Putative carboxynorsper 99.5 3.2E-14 1.1E-18 128.8 10.8 148 6-177 10-166 (365)
41 3n29_A Carboxynorspermidine de 99.4 7.5E-13 2.6E-17 121.9 13.3 143 6-177 50-206 (418)
42 1tqj_A Ribulose-phosphate 3-ep 85.4 8.2 0.00028 31.7 10.5 167 47-236 21-207 (230)
43 1x7f_A Outer surface protein; 72.8 4.7 0.00016 36.2 5.3 97 130-230 17-123 (385)
44 1h1y_A D-ribulose-5-phosphate 65.0 53 0.0018 26.4 11.1 178 35-236 7-207 (228)
45 3inp_A D-ribulose-phosphate 3- 60.1 73 0.0025 26.4 12.1 170 47-237 44-230 (246)
46 3ctl_A D-allulose-6-phosphate 57.5 77 0.0026 25.8 11.3 166 48-236 18-202 (231)
47 1zud_1 Adenylyltransferase THI 54.7 42 0.0014 27.6 7.6 80 44-126 39-144 (251)
48 3tsm_A IGPS, indole-3-glycerol 53.2 1E+02 0.0035 25.9 12.2 171 34-236 58-255 (272)
49 3cu2_A Ribulose-5-phosphate 3- 46.9 1E+02 0.0034 25.3 8.6 72 163-236 147-223 (237)
50 3noy_A 4-hydroxy-3-methylbut-2 46.7 80 0.0027 27.9 8.2 101 34-139 31-144 (366)
51 1nvm_A HOA, 4-hydroxy-2-oxoval 43.8 1.6E+02 0.0053 25.4 13.3 104 49-162 36-161 (345)
52 3o63_A Probable thiamine-phosp 41.3 85 0.0029 25.8 7.4 54 44-97 143-210 (243)
53 1tqx_A D-ribulose-5-phosphate 39.2 1.5E+02 0.0053 24.0 9.7 164 47-236 22-207 (227)
54 1vyr_A Pentaerythritol tetrani 33.7 84 0.0029 27.4 6.5 87 9-97 206-313 (364)
55 4a29_A Engineered retro-aldol 33.2 2.1E+02 0.0073 23.9 10.6 171 33-235 44-238 (258)
56 3qja_A IGPS, indole-3-glycerol 31.3 2.3E+02 0.0078 23.6 11.1 171 34-236 51-248 (272)
57 3igs_A N-acetylmannosamine-6-p 30.5 2.1E+02 0.0073 23.0 8.2 169 36-235 19-215 (232)
58 1lt8_A Betaine-homocysteine me 29.4 1.2E+02 0.0043 27.0 6.9 63 104-174 157-219 (406)
59 1jw9_B Molybdopterin biosynthe 28.2 2.1E+02 0.0072 23.1 7.8 80 44-126 42-147 (249)
60 3tsm_A IGPS, indole-3-glycerol 26.3 1.2E+02 0.0041 25.4 5.9 60 37-96 170-239 (272)
61 2xvc_A ESCRT-III, SSO0910; cel 26.3 48 0.0016 21.3 2.5 28 141-169 32-59 (59)
62 2nly_A BH1492 protein, diverge 25.8 2.8E+02 0.0095 22.8 9.9 116 102-228 28-155 (245)
63 1vc4_A Indole-3-glycerol phosp 25.1 2.8E+02 0.0096 22.7 9.1 173 34-236 45-242 (254)
64 3qja_A IGPS, indole-3-glycerol 24.6 2E+02 0.0067 24.0 7.0 25 40-64 166-190 (272)
65 3ble_A Citramalate synthase fr 24.3 3.3E+02 0.011 23.3 8.5 123 33-173 88-221 (337)
66 3rui_A Ubiquitin-like modifier 24.1 1.9E+02 0.0066 25.0 7.0 111 7-126 9-165 (340)
67 3fx7_A Putative uncharacterize 23.8 7 0.00024 27.8 -2.0 55 141-197 1-59 (94)
68 3gr7_A NADPH dehydrogenase; fl 23.8 2.8E+02 0.0097 23.7 8.0 87 8-97 188-297 (340)
69 2l69_A Rossmann 2X3 fold prote 23.2 2E+02 0.0068 20.3 5.6 63 91-170 41-107 (134)
70 2r14_A Morphinone reductase; H 22.1 1.5E+02 0.0051 26.0 6.0 87 9-97 211-318 (377)
71 2gou_A Oxidoreductase, FMN-bin 21.4 1.8E+02 0.0063 25.2 6.4 87 9-97 206-312 (365)
72 4g9p_A 4-hydroxy-3-methylbut-2 20.9 66 0.0023 28.9 3.3 100 35-139 26-148 (406)
73 1pii_A N-(5'phosphoribosyl)ant 20.1 4.8E+02 0.016 23.5 10.1 97 34-137 47-166 (452)
No 1
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=100.00 E-value=7.4e-53 Score=363.11 Aligned_cols=220 Identities=43% Similarity=0.603 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCC---CCceeeeec
Q 025987 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLP---EDIKWHFVG 85 (245)
Q Consensus 9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~---~~i~~~~lG 85 (245)
.|.+|++.|+++|.++++.++|.|++++|+||||+||++.++.++++|+++||||++|||+++|+.+. .+|.|++||
T Consensus 5 ~i~~nl~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG 84 (244)
T 3r79_A 5 EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIG 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHHHHHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecC
Confidence 48899999999999999999998889999999999999888888999999999999999999999854 368899999
Q ss_pred cCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCe
Q 025987 86 HLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNL 165 (245)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l 165 (245)
++|+++++.+++ .++++++|||+++++.|++.|.+.++ +++||||||||+||+|+|+.|+++.++++.+. ++|+|
T Consensus 85 ~lq~nk~~~~v~---~~~~i~sVds~~~a~~L~~~a~~~g~-~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~-~l~~L 159 (244)
T 3r79_A 85 PLQSNKAADAVA---LFDVVESIDREKIARALSEECARQGR-SLRFYVQVNTGLEPQKAGIDPRETVAFVAFCR-DELKL 159 (244)
T ss_dssp CCCGGGHHHHHH---HCSEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHH-HTSCC
T ss_pred CCCHHHHHHHHH---HCCEEEeeCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCCCCCHHHHHHHHHHHH-cCCCC
Confidence 999999999984 47999999999999999999999998 99999999999999999999999999999999 99999
Q ss_pred eEeEeeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCCCccCcc
Q 025987 166 EFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 242 (245)
Q Consensus 166 ~l~Gl~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~~p~~~~ 242 (245)
+++||||||++.+++. .+|..|.++.+.+ + ...+|||||+||+.+++.|+|+||||++|||.+||..-
T Consensus 160 ~l~GlmTh~a~~dd~~-~~f~~l~~l~~~l----~----~~~lSmGmS~d~~~Ai~~G~t~vRvGtaIfg~r~~~~~ 227 (244)
T 3r79_A 160 PVEGLMCIPPAEENPG-PHFALLAKLAGQC----G----LEKLSMGMSGDFETAVEFGATSVRVGSAIFGSRAENLY 227 (244)
T ss_dssp CCCEEECCCCTTSCSH-HHHHHHHHHHHHH----T----CCEEECCCTTTHHHHHHTTCSEEEECHHHHCCHHHHHH
T ss_pred EEEEEEecCCCCCCHH-HHHHHHHHHHHhC----C----CCEEEeecchhHHHHHHcCCCEEEeeHHHhCCCchhhh
Confidence 9999999999855543 6788887766543 2 35799999999999999999999999999999987654
No 2
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=100.00 E-value=1.2e-52 Score=362.45 Aligned_cols=226 Identities=39% Similarity=0.544 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCCC----Cceeeee
Q 025987 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPE----DIKWHFV 84 (245)
Q Consensus 9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~~----~i~~~~l 84 (245)
.|++|++.|+++|.++++.++|.+++++|+||||+||++.++.++++|+++||||++|||+++|+.+.. +|.|++|
T Consensus 4 ~i~~nl~~i~~~i~~a~~~~~r~~~~v~l~AV~Kahg~~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~i 83 (245)
T 3sy1_A 4 DIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFA 83 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTCCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCHHHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeec
Confidence 589999999999999999999988899999999999998888889999999999999999999988442 7889999
Q ss_pred ccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCC
Q 025987 85 GHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 164 (245)
Q Consensus 85 G~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~ 164 (245)
|++|+++++.+++ .++++++|||+++++.|++.|.+.++ +++|||+||||++|+|+||.|+++.++++.+. ++|+
T Consensus 84 G~lq~nk~~~~~~---~~~~i~sVds~~~a~~l~~~a~~~~~-~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~~ 158 (245)
T 3sy1_A 84 GPLQSNKSRLVAE---HFDWCITIDRLRIATRLNDQRPAELP-PLNVLIQINISDENSKSGIQLAELDELAAAVA-ELPR 158 (245)
T ss_dssp SCCCGGGHHHHHH---HCSEEEEECCHHHHHHHHHHSCTTSC-CEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCTT
T ss_pred CCCChHHHHHHHH---HCCEEEecCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCCC
Confidence 9999999999983 48999999999999999999998898 99999999999999999999999999999999 9999
Q ss_pred eeEeEeeeeCCCCCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCCCccCcc
Q 025987 165 LEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 242 (245)
Q Consensus 165 l~l~Gl~TH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~~p~~~~ 242 (245)
|+++|||||++..++ ..++.|+++.++++.|+++ +. ++..+|||||+||+.+++.|.|+||||++|||+++|..+
T Consensus 159 l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~-~~--~~~~LSmGmS~d~~~Ai~~G~t~vRvGt~iFg~r~y~~~ 235 (245)
T 3sy1_A 159 LRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTR-YP--HIDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSKK 235 (245)
T ss_dssp EEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT-ST--TCCEEECCCSTTHHHHHHHTCCEEEESHHHHCC------
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHh-CC--CCCEEeccCcHhHHHHHHcCCCEEECchHHhCCCCCCCC
Confidence 999999999998443 3457899999999999874 53 358899999999999999999999999999999998764
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=100.00 E-value=3.2e-51 Score=355.85 Aligned_cols=231 Identities=38% Similarity=0.622 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--CCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCCCCCceeeeec
Q 025987 8 GAAVTALRSVLHRVRQAAERSGRT--QEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFVG 85 (245)
Q Consensus 8 ~~l~~Nl~~i~~~i~~~~~~~~~~--~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~lG 85 (245)
..|.+|++.|+++|..+++.++|. +++++|+||+|+||++.++.++++|+++||||+++||+++|+++..++.|+++|
T Consensus 12 ~~i~~nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~~~~~aG~~~fgva~vqEa~~~r~~~~~~l~~h~iG 91 (256)
T 1ct5_A 12 TQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIG 91 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHHHHHHcCCCEEEEEcHHHHHHHHHhcccCeeEeecC
Confidence 359999999999999999999986 678999999999999888778899999999999999999999866679999999
Q ss_pred cCChHHHHHH--HccCCCccEEEeeCCHHHHHHHHHHHHhcCCC--CceEEEEEeCCCCCCcccCCh-hhHHHHHHHHH-
Q 025987 86 HLQSNKAKTL--LGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK--PLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVR- 159 (245)
Q Consensus 86 ~~~~~~~~~~--~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~--~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~i~- 159 (245)
++|+++++.+ + ..++++++|||+++++.|++.+.+.++. +++||||||||+||+|+||.| +++.++++.+.
T Consensus 92 ~lq~nk~~~~~~~---~~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~~i~~ 168 (256)
T 1ct5_A 92 GLQTNKCKDLAKV---PNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLS 168 (256)
T ss_dssp CCCGGGHHHHHHC---TTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhcc---cccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCCCCcCcCchHHHHHHHHHHHH
Confidence 9999999999 5 3589999999999999999998887631 589999999999999999999 89999999886
Q ss_pred hcCCCeeEeEeeeeC--CCCC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 160 LRCPNLEFSGLMTIG--MPDY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 160 ~~~~~l~l~Gl~TH~--a~~~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
..+|+|+++|||||| ++++ +.+..+|++|.++++.+++ ++. ++.|+|+|||++|+.+++.++||||||++|||
T Consensus 169 ~~~~~L~l~Glmth~~~~~ad~~~~~~~~f~~~~~~~~~l~~--~~~-~~~~lS~Gms~d~~~ai~~g~t~VR~G~~lfG 245 (256)
T 1ct5_A 169 EECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDA--KFG-TSLKLSMGMSADFREAIRQGTAEVRIGTDIFG 245 (256)
T ss_dssp TTCCSEEEEEEECCCCCC---------HHHHHHHHHHHHHHH--HHC-CCCEEECCCTTTHHHHHHTTCSEEEESHHHHC
T ss_pred ccCCCeeEEEEEEECCcCCCCCHHHHHHHHHHHHHHHHHHHh--cCC-CCCEEEecccHhHHHHHHcCCCEEEecHHHhC
Confidence 158999999999999 7633 2456799999999999876 333 36799999999999888899999999999999
Q ss_pred CCccCcccc
Q 025987 236 PREYAKKQQ 244 (245)
Q Consensus 236 ~~p~~~~~~ 244 (245)
++||.++.|
T Consensus 246 ~~~~~~~~~ 254 (256)
T 1ct5_A 246 ARPPKNEAR 254 (256)
T ss_dssp ---------
T ss_pred CCcCCCccc
Confidence 999977654
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=6.2e-44 Score=313.95 Aligned_cols=225 Identities=36% Similarity=0.544 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHHHHHHHcCCCeeecccHHHHHHhhcCC-------------
Q 025987 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIVDKAPQL------------- 75 (245)
Q Consensus 9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~~------------- 75 (245)
.+..|++.|++|++.+++.+++.+.+++++||+|+||+..+..++++|+++|||++++||+.+|+++
T Consensus 24 ~l~idl~ai~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~ 103 (282)
T 3cpg_A 24 EITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGV 103 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCCHHHHHHHHHCCCCEEEEEeHHHHHHHHHhhhhhcccccccccc
Confidence 4889999999999999999887667899999999999987744588999999999999999999872
Q ss_pred --------CCCceeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC--Cccc
Q 025987 76 --------PEDIKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE--SKSG 145 (245)
Q Consensus 76 --------~~~i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m--~R~G 145 (245)
..+|.|+++|+.++++++.+++ .++++++|||+++++.|++.+.+.++ +++|||+|||| | +|+|
T Consensus 104 ~G~~~d~~~~~i~~~~iG~~~~~~~~~~~~---~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~lkVdtG--me~~R~G 177 (282)
T 3cpg_A 104 AGAAPDAAAEHIPFHLIGQLQSNKIGKVLP---VVDTIESVDSIDLAEKISRRAVARGI-TVGVLLEVNES--GEESKSG 177 (282)
T ss_dssp C------CCEEECEEECSCCCGGGHHHHTT---TCSEEEEECCHHHHHHHHHHHHHHTC-CEEEEEEBCCS--SCTTSSS
T ss_pred ccccccccccceeeeecChhHHHHHHHHHH---hCCEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEECC--CCCCCCC
Confidence 1247788899999999999983 48999999999999999999988888 99999999999 7 9999
Q ss_pred CChhhHHHHHHHHHhcCCCeeEeEeeeeCCCCCC--CcHHHHHHHHHHHHHHHHHhCCC-CCCCeeeccCcccHHHHHHc
Q 025987 146 IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGMA-EDQCELSMGMSGDFEQAIEM 222 (245)
Q Consensus 146 ~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~S~g~s~~~~~~~~~ 222 (245)
|.++++.++++.+. ++|+|++.|||||+++.++ ....+|++|.++.+.+++.+|+. .++.++|+|||++++.+++.
T Consensus 178 ~~~ee~~~l~~~i~-~~~~l~l~Gl~th~~~~~~~~~~~~~~~~l~~~~~~l~~~~g~~~~~~~~lS~g~S~~~~~~~~~ 256 (282)
T 3cpg_A 178 CDPAHAIRIAQKIG-TLDGIELQGLMTIGAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAE 256 (282)
T ss_dssp BCGGGHHHHHHHHH-TCTTEEEEEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCCTTTHHHHHHT
T ss_pred cCHHHHHHHHHHHH-hCCCceEEeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCEEEecCcHhHHHHHHc
Confidence 99999999999999 9999999999999998443 23457888888888887633653 23567899999999988888
Q ss_pred CCCeeeeCccccCCCccC
Q 025987 223 GSTSVRIGSTIFGPREYA 240 (245)
Q Consensus 223 ~~d~VR~G~~lyG~~p~~ 240 (245)
++|+||||++|||++|+.
T Consensus 257 ~~~~VR~G~~lyG~~p~~ 274 (282)
T 3cpg_A 257 GSTIVRVGTAIFGERAFI 274 (282)
T ss_dssp TCSEEEESTTTC------
T ss_pred CCCEEEeccHHhCCCCCC
Confidence 999999999999999964
No 5
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=100.00 E-value=5.6e-40 Score=299.29 Aligned_cols=208 Identities=13% Similarity=0.170 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ +++++++||+|+ ||+..+ +.+.++|+++|+|++++||+.+|++ +..+|
T Consensus 12 dl~al~~N~~~l~~~~----------~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~i 81 (374)
T 4ecl_A 12 NLNNLEHNVNTLQKAM----------SPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGISSEI 81 (374)
T ss_dssp CHHHHHHHHHHHHHTS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEE
T ss_pred cHHHHHHHHHHHHHhc----------CCCCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCCCCCE
Confidence 5689999999988876 357899999999 999776 7778999999999999999999998 44566
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~ 159 (245)
+++|++++++++.+++ ++++++|+|+++++.|++. ++ +++|||||||| |+|+||. +++.++++.+.
T Consensus 82 --lvlg~~~~~~~~~~~~----~~i~~~v~s~~~l~~l~~~----~~-~~~v~lkvdtG--m~R~G~~-~e~~~~~~~i~ 147 (374)
T 4ecl_A 82 --LILGYTSPSRAKELCK----YELTQTLIDYRYSLLLNKQ----GY-DIKAHIKIDTG--MHRLGFS-TEDKDKILAAF 147 (374)
T ss_dssp --EECSCCCGGGHHHHHH----TTCEEEECCHHHHHHHHTT----CC-CEEEEEEEESS--SCSSSEE-SSCHHHHHHHT
T ss_pred --EEEeCCCHHHHHHHHH----CCCEEEECCHHHHHHHHhc----CC-CccEEEEEcCC--CCcCccC-HHHHHHHHHHH
Confidence 6779999999999994 7899999999999999876 77 99999999999 9999999 88899999999
Q ss_pred hcCCCeeEeEeeeeCCCCCC-------CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcc
Q 025987 160 LRCPNLEFSGLMTIGMPDYT-------STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 232 (245)
Q Consensus 160 ~~~~~l~l~Gl~TH~a~~~~-------~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ 232 (245)
++|+|++.||||||++.++ ++.+|+++|.++.+.|++ .|+.+ ..+|+|||.++...++.++|+||||++
T Consensus 148 -~~~~l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~-~g~~~--~~~~~~nSa~~~~~~~~~~d~vR~Gi~ 223 (374)
T 4ecl_A 148 -SLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKS-SGLNI--PKVHIQSSYGLLNYPELECDYIRVGVA 223 (374)
T ss_dssp -TCTTEEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCHHHHHHCTTCCCSEEEESGG
T ss_pred -hCCCceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHH-cCCCC--CeEEecCCchhhcCcccCCCEEcccce
Confidence 8999999999999998433 235688999999999987 48764 667999999888777789999999999
Q ss_pred ccCCCccCc
Q 025987 233 IFGPREYAK 241 (245)
Q Consensus 233 lyG~~p~~~ 241 (245)
|||.+|+..
T Consensus 224 lyG~~p~~~ 232 (374)
T 4ecl_A 224 LYGVLSSTN 232 (374)
T ss_dssp GGTCCSSSC
T ss_pred eeCCCCccc
Confidence 999998754
No 6
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=100.00 E-value=4.9e-40 Score=300.21 Aligned_cols=208 Identities=16% Similarity=0.189 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++ +++.+ +++++++||||+ ||+..+ +.+.++|+++|+|++++||+.+|++ +..+|
T Consensus 14 dl~al~~N~~-l~~~~----------~~~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi~~~i 82 (382)
T 4a3q_A 14 DLNAVASNFK-VFSTL----------HPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKI 82 (382)
T ss_dssp EHHHHHHHHH-HHHHH----------CTTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSEE
T ss_pred EHHHHHHHHH-HHhhc----------CCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCCCCCE
Confidence 5699999999 99887 357899999999 999776 7788999999999999999999998 55566
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhh-HHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS-CLGIVEHV 158 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e-~~~~~~~i 158 (245)
+++|++++++++.+++ ++++++|+|+++++.|++.|.+.++.+++|||||||| |+|+||.+++ +.++++.+
T Consensus 83 --lvlg~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~a~~~~~~~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i 154 (382)
T 4a3q_A 83 --LVLGVLPAKDIDKAIQ----HRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTG--MGRLGIKDTNTYQEVIEII 154 (382)
T ss_dssp --EECSCCCGGGHHHHHH----TTCBEEECCHHHHHHHHHTCCTTCCSCEEEEEEBCSS--SSSSSBCCHHHHHHHHHHH
T ss_pred --EEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCCCceeEEEEECCC--CCcCCCChHHHHHHHHHHH
Confidence 6779999999999984 7899999999999999998877662168999999999 9999999965 99999999
Q ss_pred HhcCCCeeEeEeeeeCCCCCCC---cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 159 RLRCPNLEFSGLMTIGMPDYTS---TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~~~---~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
. ++|+|+++||||||++.+++ +..|+++|.++.+.+ +. ....|.+||......++.++||||||++|||
T Consensus 155 ~-~~~~l~l~Gl~tH~a~ad~~~~~~~~Q~~~F~~~~~~l-----~~--~~~~h~aNSa~~l~~~~~~~d~vR~Gi~lYG 226 (382)
T 4a3q_A 155 Q-QYEQLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNEA-----IK--PEYIHCQNSAGSLLMDCQFCNAIRPGISLYG 226 (382)
T ss_dssp H-HCTTEEEEEEECCC-------CHHHHHHHHHHHHHTTS-----CC--CSEEECCCHHHHHHCCCTTCSEECCCGGGGT
T ss_pred H-hCCCceEEEEEEECcCCCCCCchHHHHHHHHHHHHHhh-----CC--CCcEEEEcChhhhcCcccCCCeEeecceeEC
Confidence 9 89999999999999984432 456777777644432 22 2456777777655555678999999999999
Q ss_pred CCccC
Q 025987 236 PREYA 240 (245)
Q Consensus 236 ~~p~~ 240 (245)
.+|+.
T Consensus 227 ~~p~~ 231 (382)
T 4a3q_A 227 YYPSE 231 (382)
T ss_dssp CCSSH
T ss_pred CCccc
Confidence 99864
No 7
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=100.00 E-value=7.3e-40 Score=298.16 Aligned_cols=210 Identities=13% Similarity=0.142 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ ++++++++|+|+ ||+..+ +.+.++|+++|+|++++||+.+|++ +..+|
T Consensus 14 dl~al~~N~~~l~~~~----------~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~I 83 (371)
T 3e5p_A 14 DTQAITENVQKECQRL----------PEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPI 83 (371)
T ss_dssp CHHHHHHHHHHHHHSS----------CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCE
T ss_pred EHHHHHHHHHHHHHhc----------CCCCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCCCCCE
Confidence 6689999999988877 357899999999 999776 7788999999999999999999998 55577
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHH-HHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHL-DKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEH 157 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l-~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~ 157 (245)
+++|++++++++.+++ ++++++|+|+++++.| ++.|.+.++ +++|||||||| |+|+||.+ +++.++++.
T Consensus 84 --lvlg~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~~a~~~~~-~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~ 154 (371)
T 3e5p_A 84 --LILSVVDLAYVPLLIQ----YDLSVTVATQEWLEAALQQLTPESNT-PLRVHLKVDTG--MGRIGFLTPEETKQAVRF 154 (371)
T ss_dssp --EEEEECCGGGHHHHHH----HTCEEEECCHHHHHHHHHHHCSCCSC-CBCEEEEBCSS--SCSSSBCSSHHHHHHHHH
T ss_pred --EEEcCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHHcCC-ceEEEEEECCC--CCcCCCCCHHHHHHHHHH
Confidence 6779999999999984 7999999999999999 999988888 99999999999 99999999 999999999
Q ss_pred HHhcCCCeeEeEeeeeCCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccc
Q 025987 158 VRLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTI 233 (245)
Q Consensus 158 i~~~~~~l~l~Gl~TH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~l 233 (245)
+. ++|+|+++||||||++.++ ++.+|+++|.++.+.+++ . ....|.+||......++.++||||||++|
T Consensus 155 i~-~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~----~--~~~~h~~NSa~~~~~~~~~~d~vR~Gi~l 227 (371)
T 3e5p_A 155 VQ-SHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEE----L--PRYVHVSNSATALWHPDVPGNMIRYGVAM 227 (371)
T ss_dssp HH-HSTTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSC----C--CSEEECBCHHHHHHCTTSSCSEEEECGGG
T ss_pred HH-hCCCccEEEEEEEcCCCCCCCcHHHHHHHHHHHHHHHHhhh----c--CCeEEEecChhHhcCcccCCCeEeeCcee
Confidence 99 8999999999999998443 245677777765444322 1 24467777766555557899999999999
Q ss_pred cCCCccCc
Q 025987 234 FGPREYAK 241 (245)
Q Consensus 234 yG~~p~~~ 241 (245)
||.+|+..
T Consensus 228 YG~~p~~~ 235 (371)
T 3e5p_A 228 YGLNPSGN 235 (371)
T ss_dssp GTCCTTTT
T ss_pred ECCCcccc
Confidence 99998643
No 8
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=100.00 E-value=8.4e-39 Score=290.79 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ +++++++||||+ ||+..+ +.+.++ +++|+|++++||+.+|++ +..+|
T Consensus 14 dl~al~~N~~~l~~~~----------~~~~~l~aVvKanaYGhg~~~va~~l~~~-~~~f~va~~~Ea~~lr~~G~~~~i 82 (367)
T 3mub_A 14 HLGAIRQNIQQMGAHI----------PQGTLKLAVVKANAYGHGAVAVAKAIQDD-VDGFCVSNIDEAIELRQAGLSKPI 82 (367)
T ss_dssp CHHHHHHHHHHHHHTS----------CTTCEEEEECHHHHHTTCHHHHHHHHGGG-CSEEEESSHHHHHHHHHTTCCSCE
T ss_pred eHHHHHHHHHHHHHhC----------CCCCEEEEEECcccccCCHHHHHHHHHHh-CCeEEEeEHHHHHHHHHcCCCCCE
Confidence 5689999999988877 357899999999 999776 667788 999999999999999998 55577
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHV 158 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~i 158 (245)
+++|++++++++.+++ ++++++|+|+++++.|++.+.+. + +++|||||||| |+|+||.+ +++.++++.+
T Consensus 83 --lvlg~~~~~~~~~~~~----~~l~~~V~s~~~l~~l~~~a~~~-~-~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i 152 (367)
T 3mub_A 83 --LILGVSEIEAVALAKE----YDFTLTVAGLEWIQALLDKEVDL-T-GLTVHLKIDSG--MGRIGFREASEVEQAQDLL 152 (367)
T ss_dssp --EEEEECCGGGHHHHHH----TTEEEEECCHHHHHHHHHTTCCC-T-TCEEEEEECSS--CCSSSBCSHHHHHHHHHHH
T ss_pred --EEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhc-C-CeeEEEEECCC--CCcCCCCcHHHHHHHHHHH
Confidence 6779999999999984 79999999999999999988777 7 99999999999 99999999 9999999999
Q ss_pred HhcCCCeeEeEeeeeCCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcccc
Q 025987 159 RLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ly 234 (245)
. + |+|+++||||||++.++ ++.+|+++|.++.+.+++ .+ ...|.+||......++.++||||||++||
T Consensus 153 ~-~-~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~----~~--~~~h~~NSa~~l~~~~~~~d~vR~Gi~lY 224 (367)
T 3mub_A 153 Q-Q-HGVCVEGIFTHFATADEESDDYFNAQLERFKTILASMKE----VP--ELVHASNSATTLWHVETIFNAVRMGDAMY 224 (367)
T ss_dssp H-H-TTCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHHHTCSS----CC--SEEEEECHHHHHHCGGGCCSEEEECTTTT
T ss_pred c-c-CCcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHHhhh----cC--CeEEEecChHHhcCcccCCCeEEhhhHhh
Confidence 9 8 99999999999998433 345788888776665432 12 34566666655544577999999999999
Q ss_pred CCCccCc
Q 025987 235 GPREYAK 241 (245)
Q Consensus 235 G~~p~~~ 241 (245)
|.+|+..
T Consensus 225 G~~p~~~ 231 (367)
T 3mub_A 225 GLNPSGA 231 (367)
T ss_dssp TCCTTTT
T ss_pred CCCCccc
Confidence 9998643
No 9
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=100.00 E-value=4.1e-39 Score=293.55 Aligned_cols=207 Identities=16% Similarity=0.170 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcCC-C-CC
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQL-P-ED 78 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~-~-~~ 78 (245)
|.++|++|++.+++.+ ++ ++++||||+ ||+..+ +.+.++|+++|+|++++||+++|+++ . .+
T Consensus 26 dl~al~~N~~~l~~~~----------~~-~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag~~~~~ 94 (376)
T 3kw3_A 26 DVRAIVANYRTLAQHV----------AP-TECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVM 94 (376)
T ss_dssp CHHHHHHHHHHHHHHH----------TT-SEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCE
T ss_pred cHHHHHHHHHHHHHhC----------CC-CEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcCCCCCC
Confidence 5699999999999988 23 899999999 998775 78889999999999999999999875 3 45
Q ss_pred ceeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHH
Q 025987 79 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 158 (245)
Q Consensus 79 i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i 158 (245)
| +++|++++++++.+++ ++++++|+|+++++.|++.|.+.++ +++|||||||| |+|+||.++++.++++.+
T Consensus 95 i--lvl~~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~a~~~~~-~~~V~lkVdtG--m~R~G~~~~e~~~l~~~i 165 (376)
T 3kw3_A 95 I--ALLNGFPHKAEEFVAQ----SGIIPLLNSWSTIEDWQTLCQKKNK-KFPAIIQVDTN--MSRLGLDKKELQKLIKNP 165 (376)
T ss_dssp E--EETTCCCTTCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--CCSSSBCHHHHHHHHHCC
T ss_pred E--EEEeCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHcCC-CeEEEEEECCC--CCcccCCHHHHHHHHHHH
Confidence 6 7888889999998884 7899999999999999999998898 99999999999 999999999999999988
Q ss_pred HhcCCCeeEeEeeeeCCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcccc
Q 025987 159 RLRCPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ly 234 (245)
. ++|+|+++||||||++.++ ++.+|+++|.++.+.++ ++ . .|.+||......++.++||||||++||
T Consensus 166 ~-~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~---~~----~-~h~aNSa~~l~~~~~~~d~vR~Gi~lY 236 (376)
T 3kw3_A 166 T-IFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLP---TC----K-VSFANSGGIFLGSDFYFDLVRPGIALY 236 (376)
T ss_dssp T-HHHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSC---CC----C-EECCCHHHHTTCGGGTTTEECCSGGGG
T ss_pred H-hCCCCcEEEEEEECCCCCCCCcHHHHHHHHHHHHHHhhcc---CC----C-EEEEeChhhhcCccccCCEEecChhhc
Confidence 8 8899999999999998443 24567777776544321 21 2 566666554444467999999999999
Q ss_pred CCCccCc
Q 025987 235 GPREYAK 241 (245)
Q Consensus 235 G~~p~~~ 241 (245)
|.+|+..
T Consensus 237 G~~p~~~ 243 (376)
T 3kw3_A 237 GVDPHGK 243 (376)
T ss_dssp TCCTTCC
T ss_pred CCCCCcc
Confidence 9998653
No 10
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=100.00 E-value=1.3e-38 Score=291.75 Aligned_cols=205 Identities=17% Similarity=0.168 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHc-CCCeeecccHHHHHHhhcC-CCCC
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDA-GHRSFGENYVQEIVDKAPQ-LPED 78 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~-G~~~~~va~~~Ea~~lr~~-~~~~ 78 (245)
|.++|++|++.+++. . ++++++||||+ ||+..+ +.+.++ |+++||||+++||+++|++ +..|
T Consensus 15 dl~al~~N~~~l~~~-~----------~~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aGi~~~ 83 (395)
T 3hur_A 15 DLDAAAHNLQEIREW-T----------KAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLP 83 (395)
T ss_dssp EHHHHHHHHHHHHHH-H----------TCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSC
T ss_pred eHHHHHHHHHHHHhc-C----------CCCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcCCCCC
Confidence 568999999999887 3 57899999999 999776 778899 9999999999999999998 5567
Q ss_pred ceeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhh-HHHHHHH
Q 025987 79 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS-CLGIVEH 157 (245)
Q Consensus 79 i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e-~~~~~~~ 157 (245)
| +++|++++++++.+++ ++++++|+|+++++.|++. . + +++|||||||| |+|+||.+++ +.++++.
T Consensus 84 I--lvlg~~~~~~~~~~~~----~~l~~~V~s~~~l~~l~~~-~--~--~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~ 150 (395)
T 3hur_A 84 I--WVLGAWDYSDLKLFID----HDIVITIPSLAWLQNLPDF-E--G--TLKVSLAIDTG--MTRIGFDKADEISAAKKI 150 (395)
T ss_dssp E--EESSCCCGGGHHHHHH----TTEEEEECCHHHHHTCCCC-S--S--CEEEEEEBCCS--SCSSSBCCHHHHHHHHHH
T ss_pred E--EEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHh-c--C--CCcEEEEEcCC--CCCcCCChHHHHHHHHHH
Confidence 7 7789999999999994 7999999999999998876 3 3 68999999999 9999999976 9999999
Q ss_pred HHhcCCCeeEeEeeeeCCCCCCC-------cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHH-cC--CCee
Q 025987 158 VRLRCPNLEFSGLMTIGMPDYTS-------TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MG--STSV 227 (245)
Q Consensus 158 i~~~~~~l~l~Gl~TH~a~~~~~-------~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~-~~--~d~V 227 (245)
+. ++|+|+++||||||++.+++ +..|+++|.++.+.+ .+. ....|.+||......++ .+ +|||
T Consensus 151 i~-~~~~l~l~Gl~TH~a~ad~~~~~~~~~~~~Q~~~F~~~~~~l----~~~--~~~~h~aNSa~~l~~~~~~~~~~d~v 223 (395)
T 3hur_A 151 ID-KNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQ----GFD--PSLFSMANSATCIWHHDDPRISFAAI 223 (395)
T ss_dssp HH-HCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTS----CCC--GGGEECCCHHHHHHTTTCTTSCCSEE
T ss_pred HH-hCCCceEEEEEEeCcCCCCCCCcchHHHHHHHHHHHHHHHhc----cCC--CCeEEEcCCHHHhcCcccccccCceE
Confidence 99 89999999999999984432 345666776644432 222 23457777766554456 67 9999
Q ss_pred eeCccccCCCccCc
Q 025987 228 RIGSTIFGPREYAK 241 (245)
Q Consensus 228 R~G~~lyG~~p~~~ 241 (245)
|||++|||.+|+..
T Consensus 224 R~Gi~LYG~~p~~~ 237 (395)
T 3hur_A 224 RPGQLISGVNVSNG 237 (395)
T ss_dssp CCCGGGGTCCTTTT
T ss_pred ecChhhcCCCCCcc
Confidence 99999999998643
No 11
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=100.00 E-value=4.7e-38 Score=287.92 Aligned_cols=211 Identities=13% Similarity=0.163 Sum_probs=183.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ ++++++++|+|+ ||+..+ +.+.++|+++|+|++++||..+|++ +..+|
T Consensus 17 dl~ai~~N~~~l~~~~----------~~~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~~i 86 (391)
T 2vd8_A 17 DLDAIYNNVTHIXEFI----------PSDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPI 86 (391)
T ss_dssp EHHHHHHHHHHHHHHS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCE
T ss_pred cHHHHHHHHHHHHHhc----------CCCCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCCce
Confidence 5689999999998876 247899999999 999776 6677999999999999999999998 66677
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHV 158 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~i 158 (245)
+++|+.++++++.+++ ++++++|+|+++++.|++ +.+.++ +++|||+|||| |+|+||.+ +++.++++.+
T Consensus 87 --l~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a~~~~~-~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~i 156 (391)
T 2vd8_A 87 --LVLGPSPPRDINVAAE----NDVALTVFQXEWVDEAIX-LWDGSS-TMXYHINFDSG--MGRIGIRERXELXGFLXSL 156 (391)
T ss_dssp --EECSCCCGGGHHHHHH----TTEEEECCCHHHHHHHHH-HCCSSC-CEEEEEEBCSS--CCSSSBCCHHHHHHHHHHH
T ss_pred --EEecCCChHHHHHHHH----CCeEEEEcCHHHHHHHHH-HHhcCC-ceEEEEEEeCC--CCCCCCCchhhHHHHHHHH
Confidence 5679999999999994 789999999999999999 888888 99999999999 99999997 8999999999
Q ss_pred HhcCCCeeEeEeeeeCCCCC--CC--cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcccc
Q 025987 159 RLRCPNLEFSGLMTIGMPDY--TS--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF 234 (245)
Q Consensus 159 ~~~~~~l~l~Gl~TH~a~~~--~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ly 234 (245)
. ++|+|++.||||||++.+ +. +..|+++|.++.+.+++ .|+.+ ..+|+|||.++...++.++|+||||+++|
T Consensus 157 ~-~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~-~g~~~--~~~~~gnS~g~~~~~~~~~~~vR~G~~ly 232 (391)
T 2vd8_A 157 E-GAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXE-FGVDP--XFVHTANSAATLRFQGITFNAVRIGIAMY 232 (391)
T ss_dssp T-TCTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHH-TTCCC--CSEECCCHHHHTTCTTCCTTEEEESTTTT
T ss_pred h-hcCCceEEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHh-ccCCc--ceEEecchhHhhcCcccCCCEEehhHHhc
Confidence 9 899999999999999733 22 45689999999998887 48764 55788888887655677899999999999
Q ss_pred CCCccC
Q 025987 235 GPREYA 240 (245)
Q Consensus 235 G~~p~~ 240 (245)
|.+|+.
T Consensus 233 g~~p~~ 238 (391)
T 2vd8_A 233 GLSPSV 238 (391)
T ss_dssp TCCSCT
T ss_pred CCCCcc
Confidence 998853
No 12
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=100.00 E-value=1.3e-37 Score=284.56 Aligned_cols=211 Identities=14% Similarity=0.114 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ +++++++|+|+ ||+..+ +.+.++|+++|+|++++||..+|++ +..+|
T Consensus 13 dl~~i~~N~~~l~~~~-----------~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~~~i 81 (386)
T 1vfs_A 13 DLDAVRANVRALRARA-----------PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRI 81 (386)
T ss_dssp EHHHHHHHHHHHHTTS-----------TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEE
T ss_pred eHHHHHHHHHHHHHhC-----------CCcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 5688999999888766 36899999999 999776 6677899999999999999999998 55566
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHH---HH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGI---VE 156 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~---~~ 156 (245)
+++|++++++++.+++ ++++++|+|+++++.|++.|.+.++ +++|||+|||| |+|+||.++++.++ ++
T Consensus 82 --l~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~e~~~~~~~~~ 152 (386)
T 1vfs_A 82 --MCWLWTPGGPWREAIE----TDIDVSVSGMWALDEVRAAARAAGR-TARIQLKADTG--LGRNGCQPADWAELVGAAV 152 (386)
T ss_dssp --EECCCCTTCCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTS-CEEEEEEBCSS--CCSSSBCHHHHHHHHHHHH
T ss_pred --EEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEcCC--CCCCCCCHhHHHHHHHHHH
Confidence 5788888899999994 7899999999999999999988888 99999999999 99999999887444 89
Q ss_pred HHHhcCCCeeEeEeeeeCCCCCC--C--cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcc
Q 025987 157 HVRLRCPNLEFSGLMTIGMPDYT--S--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 232 (245)
Q Consensus 157 ~i~~~~~~l~l~Gl~TH~a~~~~--~--~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ 232 (245)
.+. ++|+|++.|||||+++.++ . +..|++.|.++.+.+++ .|+.+ ..+|+|||.+++..++.++|+||||++
T Consensus 153 ~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~-~g~~~--~~~~~g~s~g~~~~~~~~~~~vR~G~~ 228 (386)
T 1vfs_A 153 AAQ-AEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEK-EGVDP--EVRHIANSPATLTLPETHFDLVRTGLA 228 (386)
T ss_dssp HHH-HTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHH-TTCCC--SEEEEECHHHHHHCGGGCSSEEEECGG
T ss_pred HHH-hCCCceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEecCCHHHHcCccccCCEEEeChh
Confidence 998 8999999999999997332 2 46789999999998887 48764 678999999988777789999999999
Q ss_pred ccCCCccC
Q 025987 233 IFGPREYA 240 (245)
Q Consensus 233 lyG~~p~~ 240 (245)
+||.+|+.
T Consensus 229 lyg~~p~~ 236 (386)
T 1vfs_A 229 VYGVSPSP 236 (386)
T ss_dssp GGTCCSCG
T ss_pred hhCCCccc
Confidence 99999863
No 13
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.9e-37 Score=281.86 Aligned_cols=211 Identities=18% Similarity=0.173 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ + ++++++|+|+ ||...+ +.+.++|+++|+|++++||..+|++ +..+|
T Consensus 17 dl~~i~~N~~~l~~~~----------~-~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~~I 85 (384)
T 1xfc_A 17 DLGAIEHNVRVLREHA----------G-HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPV 85 (384)
T ss_dssp EHHHHHHHHHHHHHHH----------T-TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCE
T ss_pred eHHHHHHHHHHHHHhC----------C-CCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCE
Confidence 5689999999998877 3 6899999999 999776 6677899999999999999999998 55566
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh---hhHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP---SSCLGIVE 156 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~---~e~~~~~~ 156 (245)
+++|+.++++++.+++ ++++++|||+++++.|++.+.+.++ +++|||+|||| |+|+||.+ +++.++++
T Consensus 86 --l~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~~~~~~~~~~~ 156 (384)
T 1xfc_A 86 --LAWLHPPGIDFGPALL----ADVQVAVSSLRQLDELLHAVRRTGR-TATVTVKVDTG--LNRNGVGPAQFPAMLTALR 156 (384)
T ss_dssp --EECCCCTTCCCHHHHH----TTCEEEECSHHHHHHHHHHHHHHCC-CEEEEEEBCSS--CCSSSBCTTTHHHHHHHHH
T ss_pred --EEEcCCCHHHHHHHHH----cCcEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEECC--CCccCCCcCcHHHHHHHHH
Confidence 6788888999999994 7899999999999999999988888 99999999999 99999998 89999999
Q ss_pred HHHhcCCCeeEeEeeeeCCCCC--C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCcc
Q 025987 157 HVRLRCPNLEFSGLMTIGMPDY--T--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 232 (245)
Q Consensus 157 ~i~~~~~~l~l~Gl~TH~a~~~--~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~ 232 (245)
.+. ++|+|++.|||||+++.+ + ....|+++|.++.+.+++ .|+.+ ..+|+|||.+++..++.++|+||||++
T Consensus 157 ~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~l~~g~s~~~~~~~~~~~~~vR~G~~ 232 (384)
T 1xfc_A 157 QAM-AEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQARE-QGVRF--EVAHLSNSSATMARPDLTFDLVRPGIA 232 (384)
T ss_dssp HHH-HTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHH-TTCCC--SEEECBCHHHHHHCGGGCCSEECCSGG
T ss_pred HHH-hCCCCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEEecCHHHhcCccccCCEEccCHH
Confidence 999 899999999999999733 2 245789999999999887 48764 678999999988777779999999999
Q ss_pred ccCCCccC
Q 025987 233 IFGPREYA 240 (245)
Q Consensus 233 lyG~~p~~ 240 (245)
+||.+|+.
T Consensus 233 lyg~~~~~ 240 (384)
T 1xfc_A 233 VYGLSPVP 240 (384)
T ss_dssp GGTCCSSG
T ss_pred hHCCCccc
Confidence 99998863
No 14
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=100.00 E-value=2.9e-37 Score=282.53 Aligned_cols=210 Identities=14% Similarity=0.119 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCc-EEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCC
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQI-RVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED 78 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~-~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~ 78 (245)
|.++|++|++.+++.+ +++ ++++|+|+ ||...+ +.+.++|+++|+|++++||..+|++ +..+
T Consensus 13 dl~ai~~N~~~l~~~~-----------~~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~~ 81 (388)
T 1bd0_A 13 DLDAIYDNVENLRRLL-----------PDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAP 81 (388)
T ss_dssp EHHHHHHHHHHHHHHS-----------CTTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHHHHHHHhC-----------CCCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCCC
Confidence 5689999999998876 368 99999999 999776 6677999999999999999999998 5557
Q ss_pred ceeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHH
Q 025987 79 IKWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEH 157 (245)
Q Consensus 79 i~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~ 157 (245)
| +++|+.++++++.+++ ++++++|+|+++++.|++.| +.++ +++|||+|||| |+|+||.+ +++.++++.
T Consensus 82 I--l~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a-~~~~-~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~ 151 (388)
T 1bd0_A 82 I--LVLGASRPADAALAAQ----QRIALTVFRSDWLEEASALY-SGPF-PIHFHLKMDTG--MGRLGVKDEEETKRIVAL 151 (388)
T ss_dssp E--EECSCCCGGGHHHHHH----TTEEEEECCHHHHHHHHHHC-CCSS-CEEEEEEBCSS--SCSSSBCSHHHHHHHHHH
T ss_pred E--EEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHh-ccCC-CeEEEEEEcCC--CCcCCCCCHHHHHHHHHH
Confidence 7 5779999999999994 78999999999999999988 8887 99999999999 99999997 899999999
Q ss_pred HHhcCCCeeEeEeeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccCCC
Q 025987 158 VRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 158 i~~~~~~l~l~Gl~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG~~ 237 (245)
+. ++|+|++.||||||++.+++....+....+.+..+++.+|+.+ ..+|+|||.++...++.++|+||||+++||.+
T Consensus 152 i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~l~~~~g~~~--~~~~~g~S~~~~~~~~~~~~~vR~G~~lyG~~ 228 (388)
T 1bd0_A 152 IE-RHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRP--PLVHCANSAASLRFPDRTFNMVRFGIAMYGLA 228 (388)
T ss_dssp HH-HSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCC--SEEECCCHHHHHHCTTSCTTEEEECGGGGTCC
T ss_pred HH-hCCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHHHhhcCCCC--CeEEecCCHHHhcCcccCCCEEehhHHHHCCC
Confidence 99 8999999999999997433222222222333333554226653 57899999998876677999999999999998
Q ss_pred cc
Q 025987 238 EY 239 (245)
Q Consensus 238 p~ 239 (245)
|+
T Consensus 229 p~ 230 (388)
T 1bd0_A 229 PS 230 (388)
T ss_dssp SC
T ss_pred cc
Confidence 86
No 15
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=100.00 E-value=1.5e-37 Score=283.24 Aligned_cols=212 Identities=17% Similarity=0.149 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.|++.+.. .+++++||+|+||+..+ +.++++|+++|+|++++||+.+|++ +..+| +.
T Consensus 20 dl~al~~N~~~l~~~~~~---------~~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~Gi~~~i--l~ 88 (376)
T 3llx_A 20 DEAKLKSNINYLKQRVES---------LGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLL--YA 88 (376)
T ss_dssp EHHHHHHHHHHHHHHHHH---------TTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEE--EE
T ss_pred cHHHHHHHHHHHHHHHHh---------CCCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhCCCCcEE--Ee
Confidence 569999999999998842 47899999999998776 7778899999999999999999998 44334 45
Q ss_pred eccCChHHHHHHHccC-CCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhh--HHHHHHHHHh
Q 025987 84 VGHLQSNKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS--CLGIVEHVRL 160 (245)
Q Consensus 84 lG~~~~~~~~~~~~~~-~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e--~~~~~~~i~~ 160 (245)
+|.+ +++++.+++.. ..++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.+++ +.++++
T Consensus 89 ~~~~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~~~~l~~~~~---- 160 (376)
T 3llx_A 89 VGIA-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQ-DFSVFIEIDSD--DHRGGIKPSDSKLLTIAK---- 160 (376)
T ss_dssp EECC-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--SSSSCBCTTCTHHHHHHH----
T ss_pred CCCC-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCCCCCCCchHHHHHHHH----
Confidence 6777 88998887210 136899999999999999999998898 99999999999 9999999965 444433
Q ss_pred cCCCeeEeEeeeeCCCCC-C--------CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHc-CCCeeeeC
Q 025987 161 RCPNLEFSGLMTIGMPDY-T--------STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEM-GSTSVRIG 230 (245)
Q Consensus 161 ~~~~l~l~Gl~TH~a~~~-~--------~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~-~~d~VR~G 230 (245)
.+ +|++.||||||++.+ . ...+|++.|.++.+.+++ .|+++ ..+|+|||+++...++. ++|+||||
T Consensus 161 ~l-~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~-~g~~~--~~vs~g~S~~~~~~~~~~~~~~vR~G 236 (376)
T 3llx_A 161 TL-GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLET-AGIHC--AITSVGSTPTAHFGEDFSDISEVRAG 236 (376)
T ss_dssp HH-GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEEECCHHHHHHCSCCTTCSEECCC
T ss_pred Hh-CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEEcCChhhhhhhhcCCccEeccc
Confidence 34 899999999999732 1 135688889999888887 48754 67899999998866555 78999999
Q ss_pred ccccCCCccC
Q 025987 231 STIFGPREYA 240 (245)
Q Consensus 231 ~~lyG~~p~~ 240 (245)
+++||++|+.
T Consensus 237 ~~lyg~~~~~ 246 (376)
T 3llx_A 237 VYTTFDLVMK 246 (376)
T ss_dssp GGGTCCHHHH
T ss_pred eEEeccHhHh
Confidence 9999999864
No 16
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=100.00 E-value=6.1e-36 Score=276.89 Aligned_cols=217 Identities=12% Similarity=0.125 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|.++|++|++.|++.+.+ .++++++|+|+||+..+ +.++++|+++|+|++++||+.+|+++..+| ++.
T Consensus 52 Dl~al~~N~~~l~~~~~~---------~gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi~~i--ll~ 120 (426)
T 3gwq_A 52 YADRVEHNLKWMQAFVAE---------YGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRV--LMA 120 (426)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEE--EEC
T ss_pred eHHHHHHHHHHHHHHHhh---------cCCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCCCeE--EEE
Confidence 569999999999998852 36899999999998776 778899999999999999999999844555 333
Q ss_pred -ccCChHHHHHHHccCC--CccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCCh-hhHHHHHHHHHh
Q 025987 85 -GHLQSNKAKTLLGGVP--NLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRL 160 (245)
Q Consensus 85 -G~~~~~~~~~~~~~~~--~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~-~e~~~~~~~i~~ 160 (245)
+.+.+++++.+++.++ .++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+|+.+ +++.++++.+.
T Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~l~VdtG--~~R~Gv~~~~e~~~l~~~i~- 196 (426)
T 3gwq_A 121 NQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNK-QLQVLLELGVP--GGRTGVRDAAQRNAVLEAIT- 196 (426)
T ss_dssp SCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-CEEEEEEECCT--TSSSSBCSHHHHHHHHHHHH-
T ss_pred CCcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCC-eeEEEEEeCCC--CCcCCCCCHHHHHHHHHHHH-
Confidence 4456788887753222 25799999999999999999999998 99999999999 99999986 89999999999
Q ss_pred cCC-CeeEeEeeeeCCCCCC--CcHHHHHHHHHHHHHHHHHhCC-CCCCCeeeccCcccHHHHHHc---------CCCee
Q 025987 161 RCP-NLEFSGLMTIGMPDYT--STPENFRTLLNCRAEVCKALGM-AEDQCELSMGMSGDFEQAIEM---------GSTSV 227 (245)
Q Consensus 161 ~~~-~l~l~Gl~TH~a~~~~--~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~S~g~s~~~~~~~~~---------~~d~V 227 (245)
++| +|++.|||||++..++ ..+.+|+++.++++.|++. |+ ..++..+|+|||++|+.+.+. +.|+|
T Consensus 197 ~~~~~l~l~Gl~th~g~~~~~~~~~~~~~~l~~l~~~L~~~-g~~~~~~~~lS~G~S~~~~~a~~~~~~~~~~~~g~t~v 275 (426)
T 3gwq_A 197 RYPDTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQ-ERFARAPAVLSGAGSAWYDVVAEEFVKASETGKVEVVL 275 (426)
T ss_dssp TSTTTEEEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHHHH-TCCSSSSEEEEECCSTTHHHHHHHTHHHHHSSSEEEEE
T ss_pred cCCCCEEEEeEEEEccccCCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEEEecCChhHHHHHhhhhccccCCCcCEEE
Confidence 999 9999999999997332 3467899999999999885 75 223478899999999877653 88999
Q ss_pred eeCccccCCCc
Q 025987 228 RIGSTIFGPRE 238 (245)
Q Consensus 228 R~G~~lyG~~p 238 (245)
|+|+++||++.
T Consensus 276 R~Gs~if~d~~ 286 (426)
T 3gwq_A 276 RPGCYLTHDVG 286 (426)
T ss_dssp CCCCSSSSCSH
T ss_pred ecceEEEcChH
Confidence 99999999984
No 17
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.1e-35 Score=269.26 Aligned_cols=208 Identities=16% Similarity=0.180 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ +. +++++|+|+ ||...+ +.+.++|+++|+|++++|+..+|++ +..+|
T Consensus 9 dl~~l~~N~~~~~~~~----------~~-~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~~~i 77 (361)
T 2dy3_A 9 DLDAIAHNTRVLKQMA----------GP-AKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEV 77 (361)
T ss_dssp CHHHHHHHHHHHHHHH----------TT-SEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEE
T ss_pred eHHHHHHHHHHHHHhC----------CC-cEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCE
Confidence 5699999999999887 23 899999999 999776 6677899999999999999999998 55566
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~ 159 (245)
+++|+.++++++.+++ ++++++|||.++++.|++.+.+ +++|||+|||| |+|+|++++++.++++.+.
T Consensus 78 --l~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~----~~~v~l~vdtG--~~R~G~~~~~~~~~~~~~~ 145 (361)
T 2dy3_A 78 --LCWIWTPEQDFRAAID----RNIDLAVISPAHAKALIETDAE----HIRVSIKIDSG--LHRSGVDEQEWEGVFSALA 145 (361)
T ss_dssp --EECCCCTTSCHHHHHT----TTCEEEECSHHHHHHHHTSCCS----CEEEEEEBCCS--SCSSSBCHHHHHHHHHHHH
T ss_pred --EEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhCcc----CCEEEEEEeCC--CCCCCCCHHHHHHHHHHHH
Confidence 6778888999999993 7899999999999999886543 58999999999 9999999999999999999
Q ss_pred hcCCCeeEeEeeeeCCC-CC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 160 LRCPNLEFSGLMTIGMP-DY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 160 ~~~~~l~l~Gl~TH~a~-~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
++|+|++.|||||+++ ++ + ....|+++|.++.+.+++ .|+++ ..+|+|+|.+++..++.++|+||||+++||
T Consensus 146 -~~~~l~~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~~~~g~s~~~~~~~~~~~~~vR~G~~l~g 221 (361)
T 2dy3_A 146 -AAPHIEVTGMFTHLACADEPENPETDRQIIAFRRALALARK-HGLEC--PVNHVCNSPAFLTRSDLHMEMVRPGLAFYG 221 (361)
T ss_dssp -TCTTEEEEEEECCCC--------CHHHHHHHHHHHHHHHHH-TTCCC--CSCBCCCHHHHHHCGGGCTTEECCCGGGGT
T ss_pred -hCCCCCEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEEeCCHHHhcCcccCCCEEecchHhhC
Confidence 8999999999999997 32 2 356789999999999887 48764 567999999888766778999999999999
Q ss_pred CCccC
Q 025987 236 PREYA 240 (245)
Q Consensus 236 ~~p~~ 240 (245)
.+|+.
T Consensus 222 ~~~~~ 226 (361)
T 2dy3_A 222 LEPVA 226 (361)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 98853
No 18
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=100.00 E-value=3.8e-35 Score=267.73 Aligned_cols=205 Identities=11% Similarity=0.109 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++.+ +++++++|+|+ ||+..+ +.+.++|+++|+|++++||..+|++ +..+|
T Consensus 15 dl~~l~~N~~~l~~~~-----------~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~~i 83 (380)
T 3co8_A 15 SKSSLAYNVQYTKQVS-----------GAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFI 83 (380)
T ss_dssp CHHHHHHHHHHHHHHH-----------CCSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCE
T ss_pred cHHHHHHHHHHHHHhC-----------CCcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 5689999999998877 36899999999 999776 6677899999999999999999998 55577
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCC-hhhHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHV 158 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~-~~e~~~~~~~i 158 (245)
+++|++++++++.+++ ++++++|+|+++++.|++.+. .+ +++|||+|||| |+|+||. ++++.++++.+
T Consensus 84 --l~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~-~~--~~~V~l~vdtG--~~R~G~~~~ee~~~~~~~i 152 (380)
T 3co8_A 84 --LILGPIDVKYAPIASK----YHFLTTVSSLDWLKSADKILG-KE--KLSVNLAVDTG--MNRIGVRSKKDLKDEIEFL 152 (380)
T ss_dssp --EECSCCCGGGHHHHHH----TTCEEEECCHHHHHHHHHHCT-TC--CEEEEEEBCSS--SCSSSBCSHHHHHHHHHHH
T ss_pred --EEECCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcc-cC--CceEEEEEcCC--CCCCCCCCHHHHHHHHHHH
Confidence 5669999999999994 689999999999999999877 54 68999999999 9999999 89999999999
Q ss_pred Hhc-CCCeeEeEeeeeCCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHc---CCCeeeeC
Q 025987 159 RLR-CPNLEFSGLMTIGMPDYT----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEM---GSTSVRIG 230 (245)
Q Consensus 159 ~~~-~~~l~l~Gl~TH~a~~~~----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~---~~d~VR~G 230 (245)
. + +|+|++.|||||+++.++ ++..|++.|.++.+. . .. ...+|+|+|.++...++. ++|+||||
T Consensus 153 ~-~~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~~~~~--~---~~--~~~~~~~nS~g~~~~~~~~~~~~~~vR~G 224 (380)
T 3co8_A 153 Q-EHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDG--L---IM--PRYVHVMNSGAAMYHSKELPGCNSIARVG 224 (380)
T ss_dssp H-HCTTTEEEEEEECCCC---------CHHHHHHHHHHHTT--S---CC--CSEEECBCHHHHHHCGGGCTTSCSEEEES
T ss_pred H-hhCCCceEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHhc--c---CC--CCcEEEeCCHHHhcCcccccCCCceEccc
Confidence 9 8 999999999999997332 234566666654332 1 11 245688889888766666 89999999
Q ss_pred ccccCCCccC
Q 025987 231 STIFGPREYA 240 (245)
Q Consensus 231 ~~lyG~~p~~ 240 (245)
+++||.+|+.
T Consensus 225 ~~lyG~~p~~ 234 (380)
T 3co8_A 225 TVVYGVEPSE 234 (380)
T ss_dssp TTTTTCCTTT
T ss_pred HhhhCcCCCc
Confidence 9999999863
No 19
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=100.00 E-value=1.9e-35 Score=269.73 Aligned_cols=203 Identities=16% Similarity=0.225 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHHHHHHHcCCCeeecccHHHHHHhhcC-CCCCce
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLIRQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIK 80 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~ 80 (245)
|.++|++|++.+++.+ +++++++|+|+ ||+..+..++.. +++|+|++++||+.+|++ +..+|.
T Consensus 29 dl~al~~N~~~l~~~~-----------~~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~~Il 96 (379)
T 2rjg_A 29 NRRALRHNLQRLRELA-----------PASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPVL 96 (379)
T ss_dssp EHHHHHHHHHHHHHHS-----------TTSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCEE
T ss_pred eHHHHHHHHHHHHHhC-----------CCCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCCCEE
Confidence 5689999999988775 37899999999 999877444444 899999999999999998 555772
Q ss_pred eeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHh
Q 025987 81 WHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRL 160 (245)
Q Consensus 81 ~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~ 160 (245)
+++|..++++++.+++ ++++++|+|+++++.|++ + +.++ +++|||+|||| |+|+||.++++.++++.+.
T Consensus 97 -~~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG--m~R~G~~~~e~~~~~~~i~- 165 (379)
T 2rjg_A 97 -LLEGFFDARDLPTISA----QHFHTAVHNEEQLAALEE-A-SLDE-PVTVWMKLDTG--MHRLGVRPEQAEAFYHRLT- 165 (379)
T ss_dssp -ETTCCSCGGGHHHHHH----TTEEEEECSHHHHHHHHH-C-CCSS-CBCEEEEBCSS--CCSSSBCHHHHHHHHHHHT-
T ss_pred -EEECCCCHHHHHHHHH----cCcEEEECCHHHHHHHHh-h-CCCC-CeEEEEEECCC--CCccCCCHHHHHHHHHHHH-
Confidence 3679889999999994 789999999999999999 6 7787 99999999999 9999999999999999999
Q ss_pred cCCC-eeEeEeeeeCCCCCCC----cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 161 RCPN-LEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 161 ~~~~-l~l~Gl~TH~a~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
++|+ |+++||||||++.++. ...|+++|.+ +.+ .+.. . +|+|||.++...++.++|+||||+++||
T Consensus 166 ~~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~----~~~--~l~~--~-~s~gnS~~~~~~~~~~~~~vR~G~~lyG 236 (379)
T 2rjg_A 166 QCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNT----FCE--GKPG--Q-RSIAASGGILLWPQSHFDWVRPGIILYG 236 (379)
T ss_dssp TCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHH----HHT--TCCS--C-EECCCHHHHHHCGGGCSSEECCCGGGGT
T ss_pred hCCCcEEEEEEEEECCccCCCCcHHHHHHHHHHHH----HHh--ccCC--C-eEEEECcchhcCcccCCCEECccHHHHC
Confidence 8999 9999999999974322 2345555544 322 2332 3 8999999988777789999999999999
Q ss_pred CCccC
Q 025987 236 PREYA 240 (245)
Q Consensus 236 ~~p~~ 240 (245)
.+|+.
T Consensus 237 ~~p~~ 241 (379)
T 2rjg_A 237 VSPLE 241 (379)
T ss_dssp CCSSS
T ss_pred CCccc
Confidence 99864
No 20
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=100.00 E-value=5.7e-35 Score=264.22 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=168.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc----cChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT----KPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa----Hg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i 79 (245)
|.++|++|++.+++. . ++++++|+|+ ||...+ +.+.++ +++|+|++++||..+|++ +..+|
T Consensus 9 dl~~l~~N~~~l~~~-~-----------~~~l~~vvKanaYG~g~~~i~~~l~~~-~~~~~va~~~Ea~~~~~~G~~~~I 75 (357)
T 1rcq_A 9 DLQALRHNYRLAREA-T-----------GARALAVIKADAYGHGAVRCAEALAAE-ADGFAVACIEEGLELREAGIRQPI 75 (357)
T ss_dssp EHHHHHHHHHHHHHH-H-----------CSEEEEECHHHHHTTCHHHHHHHHTTT-CSEEEESSHHHHHHHHHTTCCSCE
T ss_pred eHHHHHHHHHHHHhC-C-----------CCeEEEEEEeccccCCHHHHHHHHHHh-CCEEEEccHHHHHHHHhCCcCCCE
Confidence 568999999998876 3 4799999999 999776 556677 999999999999999998 55577
Q ss_pred eeeeeccCChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHH
Q 025987 80 KWHFVGHLQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 159 (245)
Q Consensus 80 ~~~~lG~~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~ 159 (245)
. +++|+.++++++.+++ ++++++|+|+++++.|++ + +.++ +++|||+|||| |+|+||.++++.++++.+.
T Consensus 76 l-~~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG--~~R~G~~~~~~~~~~~~i~ 145 (357)
T 1rcq_A 76 L-LLEGFFEASELELIVA----HDFWCVVHCAWQLEAIER-A-SLAR-PLNVWLKMDSG--MHRVGFFPEDFRAAHERLR 145 (357)
T ss_dssp E-ETTCCSSGGGHHHHHH----TTEEEEECSHHHHHHHHH-C-CCSS-CEEEEEEBCSS--SCSSSBCHHHHHHHHHHHH
T ss_pred E-EEeCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHh-h-ccCC-CeEEEEEEcCC--CCCCCCCHHHHHHHHHHHH
Confidence 2 3679989999999994 789999999999999999 7 7787 99999999999 9999999999999999999
Q ss_pred hcCCCeeEeEeeeeCCCCCCC----cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHHHHcCCCeeeeCccccC
Q 025987 160 LRCPNLEFSGLMTIGMPDYTS----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 160 ~~~~~l~l~Gl~TH~a~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~~~~~~d~VR~G~~lyG 235 (245)
++|+|++.|||||+++.++. ...|++.|.+ +.+ .+.. . +|+|||+++...++.++|+||||+++||
T Consensus 146 -~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~f~~----~~~--~l~~--~-~s~~ns~~~~~~~~~~~~~vR~G~~lyg 215 (357)
T 1rcq_A 146 -ASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSA----ASQ--GLEG--E-ISLRNSPAVLGWPKVPSDWVRPGILLYG 215 (357)
T ss_dssp -HTTCEEEEEEECCCSSTTCTTCTHHHHHHHHHHH----HHT--TCCS--C-EECCCHHHHHHCTTSCCSEECCCGGGGT
T ss_pred -hCCCCcEEEEEEcccCCCCCCcHHHHHHHHHHHH----HHh--ccCC--C-eEEEeCHHhhcCcccCCCEEccCHHhhC
Confidence 89999999999999973321 2235555544 322 2222 2 7999999888777788999999999999
Q ss_pred CCccC
Q 025987 236 PREYA 240 (245)
Q Consensus 236 ~~p~~ 240 (245)
.+|+.
T Consensus 216 ~~~~~ 220 (357)
T 1rcq_A 216 ATPFE 220 (357)
T ss_dssp CCSSS
T ss_pred CCccc
Confidence 99863
No 21
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=100.00 E-value=2.6e-34 Score=261.28 Aligned_cols=215 Identities=13% Similarity=0.078 Sum_probs=175.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|.++|++|++.+++.+.. .++++++|+|+||+..+ +.+.++|+++|+|++++||..+|+.+..++. ++.
T Consensus 18 dl~~l~~N~~~l~~~~~~---------~~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~ii-~~~ 87 (376)
T 3anu_A 18 DRTTARRNAERMRERCRA---------LGVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFDDIL-LAY 87 (376)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HTCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCEEEE-EEE
T ss_pred eHHHHHHHHHHHHHHHHH---------cCCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCCeEE-EEC
Confidence 569999999999998842 36899999999999776 6667899999999999999999998433542 456
Q ss_pred ccCChHHHHHHHccCCC-ccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhh--HHHHHHHHHhc
Q 025987 85 GHLQSNKAKTLLGGVPN-LDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS--CLGIVEHVRLR 161 (245)
Q Consensus 85 G~~~~~~~~~~~~~~~~-~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e--~~~~~~~i~~~ 161 (245)
|.. +++++.+++.++. ++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+|+.+++ +.++++.+. +
T Consensus 88 ~~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~g--~~R~G~~~~~~~~~~l~~~i~-~ 162 (376)
T 3anu_A 88 PVP-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGK-RWLVWLKLDCG--NGRAGVRPTDPAALELAQAIA-N 162 (376)
T ss_dssp ECC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTC-CEEEEEEECCC----CSSBCTTSHHHHHHHHHHH-H
T ss_pred CCc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCC-ceEEEEEECCC--CCcCCCCCCchhHHHHHHHHh-C
Confidence 888 8899998831101 5899999999999999998888887 99999999999 9999999977 999999999 8
Q ss_pred CC---CeeEeEeeeeCCC----CCC-----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCccc-HHHHHH-cCCCee
Q 025987 162 CP---NLEFSGLMTIGMP----DYT-----STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIE-MGSTSV 227 (245)
Q Consensus 162 ~~---~l~l~Gl~TH~a~----~~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~-~~~~~~-~~~d~V 227 (245)
| +|++.|||||+++ .++ ....+++.|.++.+.+++ .|+++ ..+|+|+|.+ +....+ .++|+|
T Consensus 163 -~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~vs~Ggs~~~~~~~~~~~~~~~v 238 (376)
T 3anu_A 163 -DAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQ-AGVPC--PQASIGSTPSCSHPIPEMSQLTEL 238 (376)
T ss_dssp -SCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEEECCHHHHHSCCGGGGGSSEE
T ss_pred -CCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEEccCHHHhhhhhhcCCceEe
Confidence 9 9999999999553 221 233478889999998887 48764 6789999988 765545 589999
Q ss_pred eeCccccCCCcc
Q 025987 228 RIGSTIFGPREY 239 (245)
Q Consensus 228 R~G~~lyG~~p~ 239 (245)
|||+++||+.++
T Consensus 239 r~G~~l~~~~~~ 250 (376)
T 3anu_A 239 HPGNYIFYDLQQ 250 (376)
T ss_dssp CCCGGGTCCHHH
T ss_pred ccceEEEecccc
Confidence 999999998654
No 22
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.97 E-value=2.6e-31 Score=244.81 Aligned_cols=210 Identities=11% Similarity=0.072 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.+++.+ +++++++|+|+++...+ +.+.++|+ +|+|++++|+..+|++ ++.+ .+++
T Consensus 40 dl~~l~~N~~~l~~~~-----------~~~~l~~vvKan~~~~v~~~l~~~G~-~~~vas~~E~~~~~~~G~~~~-~Il~ 106 (420)
T 2p3e_A 40 SSNFIKERFEAYRKAF-----------PDALICYAVKANFNPHLVKLLGELGA-GADIVSGGELYLAKKAGIPPE-RIVY 106 (420)
T ss_dssp EHHHHHHHHHHHHHHS-----------TTSEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGG-GEEE
T ss_pred EHHHHHHHHHHHHHhC-----------CcCeEEEEEecCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChh-HEEE
Confidence 5688999999888876 25799999999998666 77889999 9999999999999998 4433 2378
Q ss_pred ecc-CChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceE------------EEEEeCCCCC--CcccCC
Q 025987 84 VGH-LQSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKV------------LVQVNTSGEE--SKSGID 147 (245)
Q Consensus 84 lG~-~~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V------------~lkidtG~~m--~R~G~~ 147 (245)
.|+ .++++++.+++ +++ +++|+|.++++.|++.+.+.++ +++| |+++||| | +|+|+.
T Consensus 107 ~g~~~~~~~l~~a~~----~~i~~~~vds~~~l~~l~~~a~~~~~-~~~v~lRvn~~~~~~~~~~idtG--~~~~R~G~~ 179 (420)
T 2p3e_A 107 AGVGKTEKELTDAVD----SEILMFNVESRQELDVLNEIAGKLGK-KARIAIRVNPDVDPKTHPYIATG--MQKSKFGVD 179 (420)
T ss_dssp CSSCCCHHHHHHHHH----TTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEEC------------------CCSCEE
T ss_pred eCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCCCCCcccccC--CCCCCCCCC
Confidence 887 58899999984 688 6999999999999999988887 8999 9999999 8 999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEeeeeCCC-CC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHH------
Q 025987 148 PSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ------ 218 (245)
Q Consensus 148 ~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~-~~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~------ 218 (245)
++++.++++.+. ++|+|++.|||||+++ +. +...+++++|.++++.+++. |+++ .++|+|++...+.
T Consensus 180 ~~e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~l~~Ggg~~~~~~~~~~~ 255 (420)
T 2p3e_A 180 IREAQKEYEYAS-KLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQK-GFDI--KYLDIGGGLGIKYKPEDKE 255 (420)
T ss_dssp GGGHHHHHHHHH-TCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHT-TCCC--CEEECCCCBCCCCSTTCCC
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCC--CEEEECCCcCcCCCCCCCC
Confidence 999999999999 9999999999999997 32 23457899999999998874 8764 5677776554321
Q ss_pred -HHHcCCCeeeeCccccCCCcc
Q 025987 219 -AIEMGSTSVRIGSTIFGPREY 239 (245)
Q Consensus 219 -~~~~~~d~VR~G~~lyG~~p~ 239 (245)
+++.++|+||+|+.+||..+.
T Consensus 256 ~~~~~~~~~vr~g~~~yg~~~~ 277 (420)
T 2p3e_A 256 PAPQDLADLLKDLLENVKAKII 277 (420)
T ss_dssp CCHHHHHHHHTTTC--CCSEEE
T ss_pred CCHHHHHHHHHHHHHhcCCEEE
Confidence 124467999999999996543
No 23
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.94 E-value=4e-26 Score=211.11 Aligned_cols=216 Identities=13% Similarity=0.084 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|.++|++|++.+++.+.++++..+ .++++++|+|+++...+ +.+.++|+ +|.|++++|+..+|+++..+..|+++
T Consensus 36 dl~~l~~n~~~l~~~~~~a~~~~~---~~~~~~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~ 111 (434)
T 1twi_A 36 SEEQIKINYNRYIEAFKRWEEETG---KEFIVAYAYKANANLAITRLLAKLGC-GADVVSGGELYIAKLSNVPSKKIVFN 111 (434)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHS---CCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGEEEC
T ss_pred EHHHHHHHHHHHHHhhhhhhcccC---CCeEEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHCCCCCCcEEEE
Confidence 679999999999999875555433 36899999999998666 66779999 99999999999999984333234888
Q ss_pred ccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC------------CCCcccCChhh
Q 025987 85 GHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------------EESKSGIDPSS 150 (245)
Q Consensus 85 G~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~------------~m~R~G~~~~e 150 (245)
|+. .+++++.+++ +++ +++|||.++++.|++.+.+.++ +++|+|+||+|. +|+|+|+.+++
T Consensus 112 g~~k~~~~i~~a~~----~~i~~~~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~tG~~~~rfG~~~~~ 186 (434)
T 1twi_A 112 GNCKTKEEIIMGIE----ANIRAFNVDSISELILINETAKELGE-TANVAFRINPNVNPKTHPKISTGLKKNKFGLDVES 186 (434)
T ss_dssp CSSCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTT
T ss_pred CCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCcccccCCCCCCccCChhh
Confidence 986 5788998884 677 8999999999999999988888 999999999873 27999999888
Q ss_pred --HHHHHHHHHhcCCCeeEeEeeeeCCC-CCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHHHH-HHcCC
Q 025987 151 --CLGIVEHVRLRCPNLEFSGLMTIGMP-DYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA-IEMGS 224 (245)
Q Consensus 151 --~~~~~~~i~~~~~~l~l~Gl~TH~a~-~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~~~-~~~~~ 224 (245)
+.++++.+. ++|+|++.|||||+++ +.+ ....+++++.++++.+++. |+.. ..+|+|++...+.. .+..+
T Consensus 187 ~~~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~l~~GGg~~~~y~~~~~~~ 262 (434)
T 1twi_A 187 GIAMKAIKMAL-EMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE-GIEI--EDVNLGGGLGIPYYKDKQIP 262 (434)
T ss_dssp SHHHHHHHHHH-HCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHT-TCCC--SEEECCCCBCCCSSSSSCCC
T ss_pred hHHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCC--CEEEECCCcCcCCCCCCCCC
Confidence 999999999 8999999999999986 322 2356888899999999884 8764 67787765432210 01234
Q ss_pred C------eeeeCcccc
Q 025987 225 T------SVRIGSTIF 234 (245)
Q Consensus 225 d------~VR~G~~ly 234 (245)
| +||+|+..|
T Consensus 263 ~~~~~~~~i~~~i~~~ 278 (434)
T 1twi_A 263 TQKDLADAIINTMLKY 278 (434)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4 688998887
No 24
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.94 E-value=9.8e-26 Score=208.18 Aligned_cols=210 Identities=11% Similarity=0.046 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.+++.+. ..++++++|+|+++...+ +.+.++|+ +|.|+++.|+..+|++ ++.++ |++
T Consensus 39 dl~~i~~N~~~l~~~~~---------~~~~~l~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~-i~~ 107 (425)
T 2qgh_A 39 DFDKIKQAFLNYKEAFK---------GRKSLICYALKANSNLSILSLLAHLES-GADCVSIGEIQRALKAGIKPYR-IVF 107 (425)
T ss_dssp EHHHHHHHHHHHHHTTC---------SSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGG-EEE
T ss_pred EHHHHHHHHHHHHHhcC---------cCCCEEEEEeccCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChhH-EEE
Confidence 56888888888887762 126799999999998665 66779999 9999999999999998 44443 456
Q ss_pred eccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCcccCChh
Q 025987 84 VGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPS 149 (245)
Q Consensus 84 lG~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------------~~m~R~G~~~~ 149 (245)
.|+. ++++++.+++ +++ .++|||.++++.|++.+.+.++ +++|+|+||+| ++|+|+|++++
T Consensus 108 ~g~~k~~~~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~~ 182 (425)
T 2qgh_A 108 SGVGKSAFEIEQALK----LNILFLNVESFMELKTIETIAQSLGI-KARISIRINPNIDAKTHPYISTGLKENKFGVGEK 182 (425)
T ss_dssp CCTTCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHH
T ss_pred cCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEeCCCCCCCCcccccCCCCCCCcCCHH
Confidence 6764 6899999994 566 5899999999999999988888 99999999986 34999999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEeeeeCCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc--cHHH----HH
Q 025987 150 SCLGIVEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG--DFEQ----AI 220 (245)
Q Consensus 150 e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~--~~~~----~~ 220 (245)
++.++++.+. ++|+|++.|||||+++.+ + ....++++|.++++.+++ .|+.+ ..+|+|++. .|+. ..
T Consensus 183 e~~~l~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~l~~GGG~~i~y~~~~~~~~ 258 (425)
T 2qgh_A 183 EALEMFLWAK-KSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIA-LGIDL--RFFDVGGGIGVSYENEETIKL 258 (425)
T ss_dssp HHHHHHHHHH-HCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCCBCCCTTSCCCCCH
T ss_pred HHHHHHHHHH-hCCCccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEECCCcCcCCCCCCCCCH
Confidence 9999999999 899999999999998632 2 345688889999999987 48764 567776543 2210 00
Q ss_pred HcCCCeeeeCccccC
Q 025987 221 EMGSTSVRIGSTIFG 235 (245)
Q Consensus 221 ~~~~d~VR~G~~lyG 235 (245)
+...++||+|+..||
T Consensus 259 ~~~~~~v~~~i~~~~ 273 (425)
T 2qgh_A 259 YDYAQGILNALQGLD 273 (425)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhhcC
Confidence 112567788777665
No 25
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.92 E-value=3.4e-24 Score=197.78 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|.++|++|++.+++.+ +.++++++|+|++....+ +.+.+.| .+|.|+++.|+..+|+++-.+-.|++.
T Consensus 23 d~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~~I~~~ 91 (428)
T 2j66_A 23 DGDFIEAHYRQLRSRT----------NPAIQFYLSLKANNNIHLAKLFRQWG-LGVEVASAGELALARHAGFSAENIIFS 91 (428)
T ss_dssp EHHHHHHHHHHHHHTS----------CTTEEEEEEGGGCCCHHHHHHHHHTT-CEEEESSHHHHHHHHHTTCCGGGEEEC
T ss_pred eHHHHHHHHHHHHHhc----------CCCcEEEEEeeeCCCHHHHHHHHHcC-CeEEEeCHHHHHHHHHcCCCcCeEEEe
Confidence 5688888988888776 247899999999998665 7777889 699999999999999984332224888
Q ss_pred ccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC-------------CcccCChh
Q 025987 85 GHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE-------------SKSGIDPS 149 (245)
Q Consensus 85 G~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m-------------~R~G~~~~ 149 (245)
|+. .+++++.+++ +++ +++|||.++++.|++.+.+.++ +++|+|+||+| | +|+|++++
T Consensus 92 g~~k~~~~i~~a~~----~~v~~~~vds~~el~~l~~~a~~~~~-~~~V~lrvn~g--~~~~~~~~~~~~~~srfG~~~~ 164 (428)
T 2j66_A 92 GPGKKRSELEIAVQ----SGIYCIIAESVEELFYIEELAEKENK-TARVAIRINPD--KSFGSTAIKMGGVPRQFGMDES 164 (428)
T ss_dssp CSCCCHHHHHHHHH----HTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECS--SCC--CCCSSSCCCCSSSEEGG
T ss_pred CCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhhCC-CceEEEEEcCC--CCCCCCccccCCCCCCCCCCHH
Confidence 986 4688999984 677 8999999999999999988888 99999999999 6 89999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEeeeeCCCC-CC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCccc--HHH-----H
Q 025987 150 SCLGIVEHVRLRCPNLEFSGLMTIGMPD-YT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD--FEQ-----A 219 (245)
Q Consensus 150 e~~~~~~~i~~~~~~l~l~Gl~TH~a~~-~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~--~~~-----~ 219 (245)
++.++++.+. ++|+|++.|||||+++. .+ ....+++++.++++.++++.|+.. ..+++|++.. |.. .
T Consensus 165 e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~l~~GGG~~i~y~~~~~~~~ 241 (428)
T 2j66_A 165 MLDAVMDAVR-SLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVC--ECINLGGGFGVPYFSHEKALD 241 (428)
T ss_dssp GHHHHHHHHH-HCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCC--SEEECCCCBCCCCC--CCCCC
T ss_pred HHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEeCCCcCcCCCCCCCCCC
Confidence 9999999999 89999999999999863 22 334578888888888854358754 6778665532 211 0
Q ss_pred HHcCCCeeeeCccccC
Q 025987 220 IEMGSTSVRIGSTIFG 235 (245)
Q Consensus 220 ~~~~~d~VR~G~~lyG 235 (245)
.+...++||+|+..|+
T Consensus 242 ~~~~~~~i~~~~~~~~ 257 (428)
T 2j66_A 242 IGKITRTVSDYVQEAR 257 (428)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 1123467888888774
No 26
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=99.92 E-value=3.6e-25 Score=204.29 Aligned_cols=203 Identities=16% Similarity=0.186 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCC-Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-~i~~~ 82 (245)
|.++|++|++.+++.+ +++++++++|++....+ +.+.+.| .+|+|++++|+..+|++ ++. +| +
T Consensus 61 dl~~l~~N~~~l~~~~-----------~~~~i~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~r~~G~~~~~I--l 126 (419)
T 2plj_A 61 DCDVIRQQYRALKNAL-----------PNVTLHYALKPLPHPVVVRTLLAEG-ASFDLATTGEVELVASEGVPADLT--I 126 (419)
T ss_dssp EHHHHHHHHHHHHHHS-----------TTEEEEEESTTCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGGE--E
T ss_pred eHHHHHHHHHHHHHhC-----------CCCeEEEEeccCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhhE--E
Confidence 5688999999888765 36899999999998665 7788899 89999999999999998 443 35 6
Q ss_pred eeccC-ChHHHHHHHccCCCccEE-EeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCcccCChhhHHHH
Q 025987 83 FVGHL-QSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGI 154 (245)
Q Consensus 83 ~lG~~-~~~~~~~~~~~~~~~~l~-~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~------m~R~G~~~~e~~~~ 154 (245)
+.|+. .+++++.+++ +++. ++|+|.++++.|++.+. .++|||+||||.+ |+|+|++++++.++
T Consensus 127 ~~g~~k~~~~l~~a~~----~~v~~~~vds~~el~~l~~~a~-----~~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~ 197 (419)
T 2plj_A 127 HTHPIKRDADIRDALA----YGCNVFVVDNLNELEKFKAYRD-----DVELLVRLSFRNSEAFADLSKKFGCSPEQALVI 197 (419)
T ss_dssp ECCSSCCHHHHHHHHH----HTCCEEEECSHHHHHTTGGGTT-----TCEEEEEBCC---------CCCSCBCHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 77864 6789999884 6664 99999999999887543 5789999999865 89999999999999
Q ss_pred HHHHHhcCCCeeEeEeeeeCCCCC-C--CcHHHHHHHHHHHHHHHHHhCC-CCCCCeeeccCcc--cHHH---HHHcCCC
Q 025987 155 VEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGM-AEDQCELSMGMSG--DFEQ---AIEMGST 225 (245)
Q Consensus 155 ~~~i~~~~~~l~l~Gl~TH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~S~g~s~--~~~~---~~~~~~d 225 (245)
++.+. ++ +|++.|||||+++.+ + ....+++++.++++.+++ .|+ .+ ..+++|++. .|.. ..+..++
T Consensus 198 ~~~~~-~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~--~~l~~GGG~~~~y~~~~~~~~~~~~ 272 (419)
T 2plj_A 198 IETAK-EW-NIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVE-RGLPAL--STLDIGGGFPVNYTQQVMPIDQFCA 272 (419)
T ss_dssp HHHHH-HT-TCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHH-TTCCCC--CEEECCCCCCCCSSSCCCCHHHHHH
T ss_pred HHHHH-hC-CCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCC--CEEEECCCcCcCCCCCCCCHHHHHH
Confidence 99998 77 999999999999732 2 234578888888888887 488 54 556654433 2210 1123468
Q ss_pred eeeeCccccCC
Q 025987 226 SVRIGSTIFGP 236 (245)
Q Consensus 226 ~VR~G~~lyG~ 236 (245)
+||+|+..||.
T Consensus 273 ~vr~~i~~y~~ 283 (419)
T 2plj_A 273 PINEALSLLPE 283 (419)
T ss_dssp HHHHHHTTSCT
T ss_pred HHHHHHHhCCC
Confidence 99999999985
No 27
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.92 E-value=2.7e-25 Score=201.74 Aligned_cols=199 Identities=10% Similarity=0.068 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCC-Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-~i~~~ 82 (245)
|.++|++|++.+++.+ +++++++|+|++....+ +.+.++|+ +|+|++++|+..+|++ ++. +| +
T Consensus 23 dl~~l~~N~~~l~~~~-----------~~~~~~~~vKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I--~ 88 (372)
T 2nva_A 23 SPKIVEDLIDQWTILF-----------PRVTPHYAVKCNNDEVLLKTMCDKNV-NFDCASSSEIKKVIQIGVSPSRI--I 88 (372)
T ss_dssp CHHHHHHHHHHHHHHC-----------TTEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHHTCCGGGE--E
T ss_pred eHHHHHHHHHHHHHhC-----------CCCeEEEEeeeCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCCHHHE--E
Confidence 5689999999988766 36899999999998665 77889999 9999999999999998 443 35 6
Q ss_pred eeccC-ChHHHHHHHccCCCccEE-EeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC--------CcccCChhhHH
Q 025987 83 FVGHL-QSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE--------SKSGIDPSSCL 152 (245)
Q Consensus 83 ~lG~~-~~~~~~~~~~~~~~~~l~-~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m--------~R~G~~~~e~~ 152 (245)
+.|+. .+++++.+++ +++. ++|+|.++++.|++.+. .++|+|+||+| | +|+|++++++.
T Consensus 89 ~~~~~k~~~~l~~a~~----~~v~~~~vds~~~l~~l~~~~~-----~~~v~lrv~~~--~~~~~~~~~~R~G~~~~~~~ 157 (372)
T 2nva_A 89 FAHTMKTIDDLIFAKD----QGVDIATFDSSFELDKIHTYHP-----NCKMILRIRCD--DPNATVQLGNKFGANEDEIR 157 (372)
T ss_dssp ECCSCCCHHHHHHHHH----HTCCEEEECSHHHHHHHHHHCT-----TCEEEEEBCCC--CTTCSBCCTTTSSBCGGGHH
T ss_pred ECCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhCC-----CCeEEEEEecC--CCCCcccCCCCCCCCHHHHH
Confidence 77875 6789999884 6664 89999999999987653 56899999999 6 99999999999
Q ss_pred HHHHHHHhcCCCeeEeEeeeeCCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc--cHH--HHHHcCCC
Q 025987 153 GIVEHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG--DFE--QAIEMGST 225 (245)
Q Consensus 153 ~~~~~i~~~~~~l~l~Gl~TH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~--~~~--~~~~~~~d 225 (245)
++++.++ ++ +|++.|||||+++.+ + ....+++++.++++.+++ .|+.+ ..+++|++. .|. ...+..++
T Consensus 158 ~~~~~~~-~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~~~~GGg~~~~~~~~~~~~~~~~ 232 (372)
T 2nva_A 158 HLLEYAK-QL-DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAIS-VGHKP--YILDIGGGLHADIDEGELSTYMSD 232 (372)
T ss_dssp HHHHHHH-HT-TCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCSCBCCCCC---CCCHHHH
T ss_pred HHHHHHH-Hc-CCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--cEEEeCCCCCcCCCCCCCHHHHHH
Confidence 9999998 77 999999999999732 2 234578888888888887 48765 556655443 220 00123468
Q ss_pred eeeeCcccc
Q 025987 226 SVRIGSTIF 234 (245)
Q Consensus 226 ~VR~G~~ly 234 (245)
+||+|+..|
T Consensus 233 ~vr~~i~~y 241 (372)
T 2nva_A 233 YINDAIKDF 241 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999988
No 28
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.92 E-value=8.1e-25 Score=204.45 Aligned_cols=212 Identities=14% Similarity=0.086 Sum_probs=165.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|.++|++|++.+++.+ +.++++++++|++....+ +.+.+.|+ +|.|++..|+..+|++.-.+-.|++.
T Consensus 48 d~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~ 116 (467)
T 2o0t_A 48 DEDDFRSRCRETAAAF----------GSGANVHYAAKAFLCSEVARWISEEGL-CLDVCTGGELAVALHASFPPERITLH 116 (467)
T ss_dssp EHHHHHHHHHHHHHHT----------SSGGGBEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGEEEC
T ss_pred eHHHHHHHHHHHHHhc----------CCCcEEEEEeccCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCCcccEEEe
Confidence 5688999999888876 246899999999998665 66778999 99999999999999984332233788
Q ss_pred ccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCcccCCh--
Q 025987 85 GHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDP-- 148 (245)
Q Consensus 85 G~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------------~~m~R~G~~~-- 148 (245)
|+. .+++++.+++ +++ .++|||+++++.|++.+.+.++ +++|+|+||+| ++|+|+|+++
T Consensus 117 g~~k~~~~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~~~~~~srfG~~~~~ 191 (467)
T 2o0t_A 117 GNNKSVSELTAAVK----AGVGHIVVDSMTEIERLDAIAGEAGI-VQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVAS 191 (467)
T ss_dssp CTTCCHHHHHHHHH----HTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECSEEEEETEEEEESSCCSSSSEETTT
T ss_pred CCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhhCC-CCeEEEEEcCCCCCCCCcccccCCCCCCcCCcCCH
Confidence 875 5689999984 567 7899999999999999988888 99999999986 4599999987
Q ss_pred hhHHHHHHHHHhcCCCeeEeEeeeeCCC-CC--CCcHHHHHHHHHHHHHHHHHhC----CCCCCCeeeccCcc--cHHH-
Q 025987 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY--TSTPENFRTLLNCRAEVCKALG----MAEDQCELSMGMSG--DFEQ- 218 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~l~Gl~TH~a~-~~--~~~~~~~~~~~~~~~~l~~~~g----~~~~~~~~S~g~s~--~~~~- 218 (245)
+++.++++.+. ++|+|++.|||+|+++ +. +....+++++.++++.+++++| +.+ ..+++|+.. .|+.
T Consensus 192 ~e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~--~~ln~GGG~~i~y~~~ 268 (467)
T 2o0t_A 192 GAAMAAVRRVF-ATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQI--ATVDLGGGLGISYLPS 268 (467)
T ss_dssp THHHHHHHHHH-HCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTC--CEEECCCCBCCCSSTT
T ss_pred HHHHHHHHHHH-hCCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CEEEeCCCcCcCCCCC
Confidence 57899999999 8999999999999986 22 2344688889999888864357 664 567765443 2220
Q ss_pred ----HHHcCCCeeeeCcc----ccCC
Q 025987 219 ----AIEMGSTSVRIGST----IFGP 236 (245)
Q Consensus 219 ----~~~~~~d~VR~G~~----lyG~ 236 (245)
..+...++||+|+. .||.
T Consensus 269 ~~~~~~~~~~~~v~~~i~~~~~~~g~ 294 (467)
T 2o0t_A 269 DDPPPIAELAAKLGTIVSDESTAVGL 294 (467)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 01123567888877 6775
No 29
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=99.90 E-value=3.2e-23 Score=191.50 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.+++.+ +++++++++|++....+ +.+.+.| .+|+|++++|+..+|++ ++.++ +.+
T Consensus 44 dl~~l~~n~~~~~~~~-----------~~~~~~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~~-iv~ 110 (425)
T 1f3t_A 44 DLGDIVRKHETWKKCL-----------PRVTPFYAVKCNDDWRVLGTLAALG-TGFDCASNTEIQRVRGIGVPPEK-IIY 110 (425)
T ss_dssp EHHHHHHHHHHHHHHC-----------TTEEEEEEGGGCCCHHHHHHHHHTT-CEEEECSHHHHHHHHHTTCCGGG-EEE
T ss_pred eHHHHHHHHHHHHHhC-----------CCCeEEEEeeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEE
Confidence 5689999999988765 36899999999998665 7788899 79999999999999998 54455 234
Q ss_pred eccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCcccCChhhHHHHH
Q 025987 84 VGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIV 155 (245)
Q Consensus 84 lG~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~------m~R~G~~~~e~~~~~ 155 (245)
-|+. .+++++.+++ +++ .++|+|.++++.|++.+ . +++|||+||||.. |+|+|++++++.+++
T Consensus 111 ~g~~k~~~~l~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lrid~g~~~~~~~~~~RfG~~~~~~~~~~ 181 (425)
T 1f3t_A 111 ANPCKQISHIRYARD----SGVDVMTFDCVDELEKVAKTH----P-KAKMVLRISTDDSLARCRLSVKFGAKVEDCRFIL 181 (425)
T ss_dssp CCSSCCHHHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCC----------CCSCBCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhC----C-CCcEEEEEcCCCCCccCCCCCcCCCCHHHHHHHH
Confidence 3654 5788988884 677 59999999999998764 3 6899999999722 899999999999999
Q ss_pred HHHHhcCCCeeEeEeeeeCCCC-CC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHH----HHHHcCCCeee
Q 025987 156 EHVRLRCPNLEFSGLMTIGMPD-YT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE----QAIEMGSTSVR 228 (245)
Q Consensus 156 ~~i~~~~~~l~l~Gl~TH~a~~-~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~----~~~~~~~d~VR 228 (245)
+.++ +. +|++.||++|+++. .+ ...++++++.++++.+++ .|+.+ ..++.|+..... ...+..+++||
T Consensus 182 ~~~~-~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~--~~l~iGGG~~~~~~~~~~~~~~~~~vr 256 (425)
T 1f3t_A 182 EQAK-KL-NIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTE-LGFNM--HILDIGGGFPGTRDAPLKFEEIAGVIN 256 (425)
T ss_dssp HHHH-HT-TCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCCCCSSTTSSSCHHHHHHHHH
T ss_pred HHHH-hC-CCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCCCcCCCCCCCCCHHHHHHHHH
Confidence 9998 76 99999999999973 22 223466777787887777 58765 556544332110 01233568999
Q ss_pred eCccccCC
Q 025987 229 IGSTIFGP 236 (245)
Q Consensus 229 ~G~~lyG~ 236 (245)
+|+..|..
T Consensus 257 ~~i~~~~~ 264 (425)
T 1f3t_A 257 NALEKHFP 264 (425)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 99999843
No 30
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=99.89 E-value=5.8e-24 Score=193.82 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCC-ceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPED-IKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~-i~~~ 82 (245)
|.++|++|++.+++.+. +.++++++++|++....+ +.+.++|+ +|+|++++|+..+|++ ++.+ | +
T Consensus 19 dl~~l~~N~~~l~~~~~---------~~~~~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I--l 86 (386)
T 2yxx_A 19 FEETLRKRSRLVKEVFE---------GVNLLPTFAVKANNNPVLLKILREEGF-GMDVVTKGELLAAKLAGVPSHTV--V 86 (386)
T ss_dssp EHHHHHHHHHHHHHHTT---------TSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGE--E
T ss_pred EHHHHHHHHHHHHHhhc---------cCCceEEEEEeeCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCChhhE--E
Confidence 56899999999888762 126799999999997665 77889999 9999999999999998 4444 6 6
Q ss_pred eeccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC----------CC--CcccCCh
Q 025987 83 FVGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG----------EE--SKSGIDP 148 (245)
Q Consensus 83 ~lG~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~----------~m--~R~G~~~ 148 (245)
+.|+. .+++++.+++ +++ .++|+|.++++.|++.+.+ +++|+|+||+|. || +|+|+++
T Consensus 87 ~~~~~k~~~~l~~a~~----~~v~~~~vds~~el~~l~~~a~~----~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~~ 158 (386)
T 2yxx_A 87 WNGNGKSRDQMEHFLR----EDVRIVNVDSFEEMEIWRELNPE----GVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPL 158 (386)
T ss_dssp ECCSCCCHHHHHHHHH----TTCCEEEECCHHHHHHHHHHCCT----TCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEG
T ss_pred EeCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhcCc----CCeEEEEECCCCCCCCCcccccCCCCCCCCCCh
Confidence 77874 7899999984 788 8999999999999887642 367888887652 23 9999998
Q ss_pred hhHHHHHHHHHhcCCCeeEeEeeeeCCCCC-CC--cHHHHHHHHHHHHHHHHHhCCCCCCCeeecc-Ccc-cHH---HHH
Q 025987 149 SSCLGIVEHVRLRCPNLEFSGLMTIGMPDY-TS--TPENFRTLLNCRAEVCKALGMAEDQCELSMG-MSG-DFE---QAI 220 (245)
Q Consensus 149 ~e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~-~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g-~s~-~~~---~~~ 220 (245)
++ .++++ . ++++|++.||+||+++.+ +. ...|+++|.++.+.+ . ...++.| ..+ .|. ...
T Consensus 159 ~~-~~~~~--~-~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l------~--~~~~n~GGG~~~~~~~~~~~~ 226 (386)
T 2yxx_A 159 ED-LDSFM--E-RFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY------G--FEEINIGGGWGINYSGEELDL 226 (386)
T ss_dssp GG-HHHHH--H-HHTTSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH------T--CSEEECCCCBCCCSSSCCCCH
T ss_pred hH-HHHHh--h-ccCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhC------C--CCEEEECCCcCcCCCCCCCCH
Confidence 88 78887 5 689999999999999732 22 234666666555544 1 2344433 221 110 001
Q ss_pred HcCCCeeeeCccccC
Q 025987 221 EMGSTSVRIGSTIFG 235 (245)
Q Consensus 221 ~~~~d~VR~G~~lyG 235 (245)
+..+++||+|+..|+
T Consensus 227 ~~~~~~vr~~i~~y~ 241 (386)
T 2yxx_A 227 SSYREKVVPDLKRFK 241 (386)
T ss_dssp HHHHHHTGGGGTTCS
T ss_pred HHHHHHHHHHHHhCC
Confidence 234689999999996
No 31
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.89 E-value=3.5e-22 Score=185.50 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.+++.+. ..++++++++|++....+ +.+.+.|+ +|.|+++.|+..+|++ ++.+. +++
T Consensus 55 d~~~l~~n~~~l~~~~~---------~~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~-I~~ 123 (443)
T 3vab_A 55 SRATIERHFRVFHDAFA---------DMDTLVTYALKANSNQAVLTALAKLGA-GADTVSQGEIRRALAAGIPANR-IVF 123 (443)
T ss_dssp EHHHHHHHHHHHHHHTT---------TSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGG-EEE
T ss_pred EHHHHHHHHHHHHHhhc---------cCCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCChhh-EEE
Confidence 56889999999888773 125899999999987665 77788998 9999999999999998 44432 256
Q ss_pred ecc-CChHHHHHHHccCCCccEE-EeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC----------CCC--CcccCChh
Q 025987 84 VGH-LQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS----------GEE--SKSGIDPS 149 (245)
Q Consensus 84 lG~-~~~~~~~~~~~~~~~~~l~-~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG----------~~m--~R~G~~~~ 149 (245)
.|+ .++++++.+++ +++. ++|||.++++.|++.+.+.++ +++|+|+||+| ++| +|+|++++
T Consensus 124 ~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~~~ 198 (443)
T 3vab_A 124 SGVGKTPREMDFALE----AGIYCFNVESEPELEILSARAVAAGK-VAPVSLRINPDVDAKTHAKISTGKSENKFGIPRD 198 (443)
T ss_dssp ECTTCCHHHHHHHHH----HTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEECCBCTTTCCBC---CCCCSSSEEGG
T ss_pred cCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCcccccCCCCCCCcCCHH
Confidence 676 46888999884 5665 999999999999999999898 99999999864 224 99999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEeeeeCCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025987 150 SCLGIVEHVRLRCPNLEFSGLMTIGMPD---YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 212 (245)
Q Consensus 150 e~~~~~~~i~~~~~~l~l~Gl~TH~a~~---~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~ 212 (245)
++.++++.+. ++|+|++.||++|+++. .+....+++++.++++.+++ .|+++ ..+++|+
T Consensus 199 e~~~ll~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~-~G~~l--~~ldiGG 260 (443)
T 3vab_A 199 KARAAYARAA-SLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQA-DGHNI--RHVDVGG 260 (443)
T ss_dssp GHHHHHHHHH-HSTTEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCC
T ss_pred HHHHHHHHHh-hCCCceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCC
Confidence 9999999999 89999999999999862 22445788889999999987 48764 7788664
No 32
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.89 E-value=1.3e-21 Score=181.50 Aligned_cols=187 Identities=16% Similarity=0.115 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.+++.+. +.++++++++|++....+ +.+.+.|+ +|.|+++.|+..+|++ ++.+. +.+
T Consensus 58 dl~~l~~n~~~l~~~~~---------~~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~-I~~ 126 (441)
T 3n2b_A 58 SRATLERHWHAFDKSVG---------DYPHLICYAVKANSNLGVLNTLARLGS-GFDIVSVGELERVLAAGGDPSK-VVF 126 (441)
T ss_dssp EHHHHHHHHHHHHHHTT---------TSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGG-EEE
T ss_pred EHHHHHHHHHHHHHhhc---------cCCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCccc-EEE
Confidence 56889999999888773 125899999999987665 77788998 9999999999999998 44442 256
Q ss_pred ecc-CChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCcccCChh
Q 025987 84 VGH-LQSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPS 149 (245)
Q Consensus 84 lG~-~~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------------~~m~R~G~~~~ 149 (245)
.|+ .++++++.+++ +++ +++|||.++++.|++.+.+.++ +++|+|+||+| .+++|+|++++
T Consensus 127 ~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~~~ 201 (441)
T 3n2b_A 127 SGVGKTEAEMKRALQ----LKIKCFNVESEPELQRLNKVAGELGV-KAPISLRINPDVDAKTHPYISTGLRDNKFGITFD 201 (441)
T ss_dssp CCTTCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGG
T ss_pred cCCCCCHHHHHHHHH----CCCCEEEEcCHHHHHHHHHHHHhcCC-CcEEEEEeccCCCcCCCcccccCCCCCcccCCHH
Confidence 676 46788999984 566 5899999999999999998888 99999999876 23699999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEeeeeCCCC-CC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025987 150 SCLGIVEHVRLRCPNLEFSGLMTIGMPD-YT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGM 212 (245)
Q Consensus 150 e~~~~~~~i~~~~~~l~l~Gl~TH~a~~-~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~ 212 (245)
++.++++.+. ++|+|++.|||+|+++. .+ ...++++++.++++.+++ .|++. ..+++|+
T Consensus 202 ~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~-~G~~l--~~LdiGG 263 (441)
T 3n2b_A 202 RAAQVYRLAH-SLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKA-EGIHI--RHLDVGG 263 (441)
T ss_dssp GHHHHHHHHH-HCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCS
T ss_pred HHHHHHHHHh-cCCCeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEECC
Confidence 9999999999 89999999999999973 22 345678889999998887 58764 7788664
No 33
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=99.87 E-value=1.6e-21 Score=181.22 Aligned_cols=201 Identities=14% Similarity=0.100 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.+++.+ +++++++++|++....+ +.+.+.| .+|.|+++.|+..+|++ ++.++ +.+
T Consensus 44 d~~~l~~n~~~~~~~~-----------~~~~i~yavKAn~~~~v~~~l~~~G-~g~~vaS~~E~~~~~~aG~~~~~-iv~ 110 (448)
T 3btn_A 44 DLGKIVKKHSQWQTVV-----------AQIKPFYTVKCNSTPAVLEILAALG-TGFACSSKNEMALVQELGVSPEN-IIF 110 (448)
T ss_dssp EHHHHHHHHHHHHHHC-----------TTEEEEEEGGGCCCHHHHHHHHHHT-CEEEESSHHHHHHHHHTTCCGGG-EEE
T ss_pred eHHHHHHHHHHHHHhC-----------CCCeEEEEeeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEE
Confidence 5688999999888776 36799999999998665 7778899 49999999999999998 55454 134
Q ss_pred eccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCcccCChhhHHHHH
Q 025987 84 VGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIV 155 (245)
Q Consensus 84 lG~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~------m~R~G~~~~e~~~~~ 155 (245)
-|+. .+++++.+++ +++ .++|+|.++++.|++.+ . +++|||+||+|.+ |+|+|+.++++.+++
T Consensus 111 ~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lRin~g~~~~~~~~~~RfG~~~~~~~~~~ 181 (448)
T 3btn_A 111 TSPCKQVSQIKYAAK----VGVNIMTCDNEIELKKIARNH----P-NAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLL 181 (448)
T ss_dssp CCSSCCHHHHHHHHH----HTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCCCC--------CCCCBCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHhC----C-CCeEEEEEecCCCccCCCCCCcCCCCHHHHHHHH
Confidence 4654 6788888884 677 59999999999998763 3 6799999999855 899999998898999
Q ss_pred HHHHhcCCCeeEeEeeeeCCCCC---CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc--cHHHHHHcCCCeeeeC
Q 025987 156 EHVRLRCPNLEFSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG--DFEQAIEMGSTSVRIG 230 (245)
Q Consensus 156 ~~i~~~~~~l~l~Gl~TH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~--~~~~~~~~~~d~VR~G 230 (245)
+.++ ++ +|++.||++|+++.+ +...++++++.++++.+++ .|+.+ .+++.|+.. .++ ..+...++||+|
T Consensus 182 ~~~~-~~-~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~~~~-~G~~~--~~ldiGGG~~~~~~-~~~~~~~~v~~~ 255 (448)
T 3btn_A 182 ECAK-EL-DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGE-FGFTM--NMLDIGGGFTGTEI-QLEEVNHVISPL 255 (448)
T ss_dssp HHHH-HH-TCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCSCCCSCHH-HHHHHHHHHHHH
T ss_pred HHHH-hC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCCCcCCCCC-CHHHHHHHHHHH
Confidence 9988 77 899999999999732 2334577778888888877 58765 567644332 111 123346788888
Q ss_pred cccc
Q 025987 231 STIF 234 (245)
Q Consensus 231 ~~ly 234 (245)
+..|
T Consensus 256 i~~~ 259 (448)
T 3btn_A 256 LDIY 259 (448)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8877
No 34
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=179.68 Aligned_cols=204 Identities=12% Similarity=0.070 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCCCceeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPEDIKWHF 83 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~~i~~~~ 83 (245)
|.++|++|++.+++.+ ++++++.++|++....+ +.+.+.| .+|.|+++.|+..+|++ ++.++ +.+
T Consensus 54 Dl~~l~~n~~~l~~~~-----------~~~~i~yavKAn~~~~v~~~l~~~G-~g~dvaS~~E~~~~~~aG~~~~~-iv~ 120 (471)
T 2oo0_A 54 DLGDILKKHLRWLKAL-----------PRVTPFYAVKCNDSKAIVKTLAATG-TGFDCASKTEIQLVQSLGVPPER-IIY 120 (471)
T ss_dssp EHHHHHHHHHHHHHHC-----------TTEEEEEEGGGCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGG-EEE
T ss_pred EHHHHHHHHHHHHHhC-----------CCCeEEEEEeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEE
Confidence 5689999999988766 36799999999997665 7778899 89999999999999998 54444 134
Q ss_pred eccC-ChHHHHHHHccCCCccE-EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCcccCChhhHHHHH
Q 025987 84 VGHL-QSNKAKTLLGGVPNLDM-VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIV 155 (245)
Q Consensus 84 lG~~-~~~~~~~~~~~~~~~~l-~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~------m~R~G~~~~e~~~~~ 155 (245)
-|+. .+++++.+++ +++ .++|+|.++++.|++.+ . +++|||+||+|.. |+|+|+.++++.+++
T Consensus 121 ~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~V~lRvn~g~~~~~~~~~~RfG~~~~~~~~~~ 191 (471)
T 2oo0_A 121 ANPCKQVSQIKYAAN----NGVQMMTFDSEVELMKVARAH----P-KAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLL 191 (471)
T ss_dssp CCSSCCHHHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEECCCCTTSSBCCTTTSCBCHHHHHHHH
T ss_pred eCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHhC----C-CCeEEEEEcCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 4654 6788888884 566 59999999999998764 3 6799999999732 899999998999999
Q ss_pred HHHHhcCCCeeEeEeeeeCCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcccHH----HHHHcCCCeee
Q 025987 156 EHVRLRCPNLEFSGLMTIGMPDY-T--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE----QAIEMGSTSVR 228 (245)
Q Consensus 156 ~~i~~~~~~l~l~Gl~TH~a~~~-~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~~~----~~~~~~~d~VR 228 (245)
+.++ ++ +|++.||++|+++.. + ...++++++.++++.+++ .|+.+ ..++.|+..... ...+...++||
T Consensus 192 ~~~~-~~-~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~~~-~G~~~--~~ldiGGG~~~~~~~~~~~~~~~~~i~ 266 (471)
T 2oo0_A 192 ERAK-EL-NIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAE-VGFSM--YLLDIGGGFPGSEDVKLKFEEITGVIN 266 (471)
T ss_dssp HHHH-HT-TCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCCCCCSSSSSSSCHHHHHHHHH
T ss_pred HHHH-hC-CCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEECCCcCCCCCCCCCHHHHHHHHH
Confidence 9998 77 999999999999732 2 234577778888888877 58765 556644332110 01233467888
Q ss_pred eCccccCC
Q 025987 229 IGSTIFGP 236 (245)
Q Consensus 229 ~G~~lyG~ 236 (245)
+|+..|..
T Consensus 267 ~~l~~~~p 274 (471)
T 2oo0_A 267 PALDKYFP 274 (471)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHhc
Confidence 88888743
No 35
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.83 E-value=4.2e-20 Score=170.55 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCC----Cc
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE----DI 79 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~----~i 79 (245)
|.++|++|++.++ .+ . ++++++|++....+ +.+.+.|+ +|+|+++.|+..+|++ ++. +.
T Consensus 32 dl~~l~~N~~~l~-~~-----------~--~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~~~~~ 96 (425)
T 1knw_A 32 DAQIIRRQIAALK-QF-----------D--VVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDD 96 (425)
T ss_dssp EHHHHHHHHHTTT-TS-----------S--EEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTS
T ss_pred EHHHHHHHHHHHh-hC-----------C--cceEeeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCCCCCCcCe
Confidence 5688888888877 54 2 89999999987665 77888996 7999999999999998 554 33
Q ss_pred eeeeecc-CChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceE--------EEEEeCCCCCCcccCChhh
Q 025987 80 KWHFVGH-LQSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKV--------LVQVNTSGEESKSGIDPSS 150 (245)
Q Consensus 80 ~~~~lG~-~~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V--------~lkidtG~~m~R~G~~~~e 150 (245)
+.+.|+ ..+++++.+++ +++.++|+|.++++.|++.+.+.+. .++| |.++|||..|+|+|+++++
T Consensus 97 -Iv~~g~~k~~~~l~~a~~----~~i~~~vds~~el~~l~~~a~~~~v-~lRv~~~~~~~~h~~i~tG~~~~RfG~~~~~ 170 (425)
T 1knw_A 97 -IVFTADVIDQATLERVSE----LQIPVNAGSVDMLDQLGQVSPGHRV-WLRVNPGFGHGHSQKTNTGGENSKHGIWYTD 170 (425)
T ss_dssp -EEEEESCCCHHHHHHHHH----HTCCEEESSHHHHHHHHHHSTTCEE-EEEEECSCCSSCTTSCCSSSTTCCCSEEGGG
T ss_pred -EEEECCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhhhhccE-EEEECCCCCCCCCcccccCCCCCCCcCCHHH
Confidence 245574 57889999984 6788999999999999987653222 2222 3334566669999999999
Q ss_pred HHHHHHHHHhcCCCeeEeEeeeeCCCCCCC--cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025987 151 CLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--TPENFRTLLNCRAEVCKALGMAEDQCELSMGM 212 (245)
Q Consensus 151 ~~~~~~~i~~~~~~l~l~Gl~TH~a~~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~ 212 (245)
+.++++.++ ++ +|++.||++|+++.++. ..+++++| .+.+++ +|+.+ ..++.|+
T Consensus 171 ~~~~~~~~~-~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~---~~~~~~-~G~~~--~~ln~GG 226 (425)
T 1knw_A 171 LPAALDVIQ-RH-HLQLVGIHMHIGSGVDYAHLEQVCGAM---VRQVIE-FGQDL--QAISAGG 226 (425)
T ss_dssp HHHHHHHHH-HT-TCEEEEEECCCCCTTCHHHHHHHHHHH---HHHHHH-HTCCC--SEEECCC
T ss_pred HHHHHHHHH-HC-CCCEEEEEEECCCCCCHHHHHHHHHHH---HHHHHH-hCCCC--cEEEeCC
Confidence 999999998 88 99999999999974331 12334334 444444 47764 5666543
No 36
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=99.82 E-value=2.9e-19 Score=165.06 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcC-CCC-Cceee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQ-LPE-DIKWH 82 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~-~~~-~i~~~ 82 (245)
|.++|++|++.+++.+ +++++++++|++....+ +.+.+.|+ +|.|++..|+..++++ +.. +| +
T Consensus 44 dl~~l~~n~~~~~~~~-----------~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--i 109 (424)
T 7odc_A 44 DLGDILKKHLRWLKAL-----------PRVTPFYAVKCNDSRAIVSTLAAIGT-GFDCASKTEIQLVQGLGVPAERV--I 109 (424)
T ss_dssp EHHHHHHHHHHHHHHC-----------TTEEEEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGE--E
T ss_pred eHHHHHHHHHHHHHhC-----------CCCeEEEEeccCCcHHHHHHHHHcCC-cEEECCHHHHHHHHHcCCChhhE--E
Confidence 5688999999988876 36899999999987665 77778998 9999999999999998 443 35 5
Q ss_pred eecc-CChHHHHHHHccCCCccEE-EeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------CCCCcccCChhhHHHH
Q 025987 83 FVGH-LQSNKAKTLLGGVPNLDMV-EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------GEESKSGIDPSSCLGI 154 (245)
Q Consensus 83 ~lG~-~~~~~~~~~~~~~~~~~l~-~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG------~~m~R~G~~~~e~~~~ 154 (245)
+.|+ ..+++++.+++ +++. ++|+|.++++.|++.+. .++|+|+||+| ..|+|+|++++++.++
T Consensus 110 ~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~~-----~~~v~lRvn~~~~~~~~~~~skfG~~~~~~~~~ 180 (424)
T 7odc_A 110 YANPCKQVSQIKYAAS----NGVQMMTFDSEIELMKVARAHP-----KAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180 (424)
T ss_dssp ECCSSCCHHHHHHHHH----TTCCEEEECSHHHHHHHHHHCT-----TCEEEEEBCC-----------CCCBCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhCC-----CCeEEEEECCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 6676 45778888884 5664 69999999999988643 57899999996 2379999999999999
Q ss_pred HHHHHhcCCCeeEeEeeeeCCCC-CC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025987 155 VEHVRLRCPNLEFSGLMTIGMPD-YT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGM 212 (245)
Q Consensus 155 ~~~i~~~~~~l~l~Gl~TH~a~~-~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~ 212 (245)
++.++ + ++|++.||++|+++. .+ ....+++++.++++.+++ +|+++ ..++.|+
T Consensus 181 ~~~~~-~-~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~-~G~~~--~~ldiGG 236 (424)
T 7odc_A 181 LERAK-E-LNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATE-VGFSM--HLLDIGG 236 (424)
T ss_dssp HHHHH-H-TTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCC
T ss_pred HHHHH-h-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCC
Confidence 99998 6 589999999999973 22 334567778888887777 58764 6676553
No 37
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=99.72 E-value=6.9e-16 Score=147.99 Aligned_cols=198 Identities=11% Similarity=0.069 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCC---CeeecccHHHHHHhhcCCCCCcee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGH---RSFGENYVQEIVDKAPQLPEDIKW 81 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~---~~~~va~~~Ea~~lr~~~~~~i~~ 81 (245)
|++.|++|++.+++.+....+..+- +.+.+++.++|++....+ +.+.+.|+ .+|.|++..|+...++++..+..+
T Consensus 51 D~d~L~~ni~~l~~af~~a~~~~~y-~g~~~i~YAVKAN~~~~Vl~~L~~~Ga~~g~G~dvaS~~El~~al~aG~~~~~I 129 (619)
T 3nzp_A 51 FPHLIQKQIENIYGNFNKARKEFGY-KGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPI 129 (619)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTC-CSCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHHSCTTSEE
T ss_pred cHHHHHHHHHHHHHHHHHHhhhccc-CCCEEEEEEEeccCcHHHHHHHHHhCCCCCceEEEeCHHHHHHHHhcCCCCCEE
Confidence 6789999999999988765444332 236799999999887554 77888897 589999999999988884443222
Q ss_pred eeeccCChHHHHHHH---ccCCCccEEEeeCCHHHHHHHHHHHHhcC-CCCceEEEEEe-----------CCCCCCcccC
Q 025987 82 HFVGHLQSNKAKTLL---GGVPNLDMVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVN-----------TSGEESKSGI 146 (245)
Q Consensus 82 ~~lG~~~~~~~~~~~---~~~~~~~l~~~v~s~~~a~~l~~~a~~~~-~~~~~V~lkid-----------tG~~m~R~G~ 146 (245)
.+-|.-.++.++.++ + ...++.++|||++.++.|.+.+++.| + +.+|+|+|| ||+.++|+|+
T Consensus 130 v~nG~K~~e~I~~Al~a~~--~g~~v~ivVDS~~ELe~l~~~a~~~g~~-~~~V~LRInp~~~g~~~~~~TGg~~sKFGi 206 (619)
T 3nzp_A 130 TVNGFKDRELINIGFIAAE--MGHNITLTIEGLNELEAIIDIAKERFKP-KPNIGLRVRLHSAGVGIWAKSGGINSKFGL 206 (619)
T ss_dssp EECSCCCHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHTTSCSC-CCEEEEEBCCTTC-------------CCSB
T ss_pred EeCCCCCHHHHHHHHhhhh--cCCcEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEEEecCCCCCcccccCCCCCccCcC
Confidence 344654566677654 2 12578899999999999999999888 8 899999997 4545699999
Q ss_pred ChhhHHHHHHHHHhcCCCe-eEeEeeeeCCCC--C-CCcHHHHHHHHHHHHHHHHHhCC-CCCCCeeecc
Q 025987 147 DPSSCLGIVEHVRLRCPNL-EFSGLMTIGMPD--Y-TSTPENFRTLLNCRAEVCKALGM-AEDQCELSMG 211 (245)
Q Consensus 147 ~~~e~~~~~~~i~~~~~~l-~l~Gl~TH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~S~g 211 (245)
+++++.++++.++ +++++ ++.||++|.++. + +.....++++.++++.+++ .|+ + +..++.|
T Consensus 207 ~~ee~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~-~G~~~--l~~LDiG 272 (619)
T 3nzp_A 207 TSTELIEAVNLLK-ENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRK-MGAKN--LKAINLG 272 (619)
T ss_dssp CHHHHHHHHHHHH-HTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHHHHH-TTCTT--CCEEEEE
T ss_pred CHHHHHHHHHHHH-hCCCCCceeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH-hcCCC--CCEEEeC
Confidence 9999999999999 89999 599999999862 2 2334567788888888887 587 5 4667654
No 38
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=99.69 E-value=1.7e-15 Score=146.23 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCC-eeecccHHHHHHhhcC-CCC-Ccee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHR-SFGENYVQEIVDKAPQ-LPE-DIKW 81 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~-~~~va~~~Ea~~lr~~-~~~-~i~~ 81 (245)
|++.|++|++.+++.+....+..+- +.+.+++..+|++....+ +.+.+.|+. +|.|++..|+...+++ +.. .+ +
T Consensus 92 D~d~Lr~ni~~l~~af~~a~~~~~Y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~G~dvaS~gEl~~al~aG~~p~~i-I 169 (666)
T 3nzq_A 92 FPQILQHRLRSINAAFKRARESYGY-NGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSV-I 169 (666)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEGGGCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHTTSCCE-E
T ss_pred CHHHHHHHHHHHHHHHHHhHHhhcc-cCCeEEEEEEeeCChHHHHHHHHHcCCCceEEEeCHHHHHHHHHcCCCCCcE-E
Confidence 6799999999999988654333322 235789999999887554 778889986 9999999999998888 454 33 2
Q ss_pred eeeccCChHHHHHHHccC-CCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCcccCChh
Q 025987 82 HFVGHLQSNKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKSGIDPS 149 (245)
Q Consensus 82 ~~lG~~~~~~~~~~~~~~-~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkid-----------tG~~m~R~G~~~~ 149 (245)
.+-|.-.+++++.+++.. ...++.++|||++.++.|++.+++.|+ +.+|+|.|+ ||+..+|+|++++
T Consensus 170 v~nG~K~~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~~g~-~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~ 248 (666)
T 3nzq_A 170 VCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNV-VPRLGVRARLASQGSGKWQSSGGEKSKFGLAAT 248 (666)
T ss_dssp EECSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTC-CCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHH
T ss_pred EEcCCCCHHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEEecCCCCcCccccCCCCCcCcCCHH
Confidence 344755677788776200 014678999999999999999999998 999999985 4534499999999
Q ss_pred hHHHHHHHHHhcCCCee-EeEeeeeCCCCC---CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025987 150 SCLGIVEHVRLRCPNLE-FSGLMTIGMPDY---TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 212 (245)
Q Consensus 150 e~~~~~~~i~~~~~~l~-l~Gl~TH~a~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~ 212 (245)
++.++++.++ ++++++ +.||++|.++.. +.....++++.++++.+++ .|+.. ..++.|+
T Consensus 249 e~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~l~~~L~~-~G~~l--~~LDiGG 311 (666)
T 3nzq_A 249 QVLQLVETLR-EAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHK-LGVNI--QCFDVGG 311 (666)
T ss_dssp HHHHHHHHHH-HTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHT-TTCCC--CEEECCS
T ss_pred HHHHHHHHHH-hCCCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCC
Confidence 9999999999 899997 999999998631 2334566777788888876 57653 6777553
No 39
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=99.65 E-value=6.8e-15 Score=141.60 Aligned_cols=200 Identities=12% Similarity=0.102 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCC------CeeecccHHHHHHhhcC-CCC
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGH------RSFGENYVQEIVDKAPQ-LPE 77 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~------~~~~va~~~Ea~~lr~~-~~~ 77 (245)
|++.|++|++.+++.+.......+- +.+.+++..+|++....+ +.+.+.|+ .+|.|++..|+...+++ ++.
T Consensus 70 D~d~L~~ni~~l~~af~~a~~~~~y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~~~ 148 (648)
T 3n2o_A 70 FPQILHQRVHSICDAFNQAIEEYQY-PNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHA 148 (648)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-SSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTSSS
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhcc-cCCeEEEEEEeecCcHHHHHHHHHhCCccccCCceEEecCHHHHHHHHHcCCCC
Confidence 6799999999999988754333222 235789999999887554 77778874 89999999999998887 444
Q ss_pred C-ceeeeeccCChHHHHHHHccC-CCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEe-----------CCCCCCcc
Q 025987 78 D-IKWHFVGHLQSNKAKTLLGGV-PNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN-----------TSGEESKS 144 (245)
Q Consensus 78 ~-i~~~~lG~~~~~~~~~~~~~~-~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkid-----------tG~~m~R~ 144 (245)
+ + +.+-|.-.+++++.+++.. ...++.++|||++.++.|.+.|++.|+ +.+|+|.|| ||+..+|+
T Consensus 149 e~i-Iv~nG~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g~-~~~V~LRInp~~~~~~~~i~TGg~~SKF 226 (648)
T 3n2o_A 149 SSV-IVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGV-TPRLGIRIRLASQGAGKWQASGGEKSKF 226 (648)
T ss_dssp CCE-EEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTC-CCEEEEEBCCSTTSTTTTCSSSSCCCCC
T ss_pred CcE-EEecCCCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEEECCCCCCCCccccCCCCCcC
Confidence 2 3 2344765677788776200 014578899999999999999999998 999999996 45445899
Q ss_pred cCChhhHHHHHHHHHhcCCCee-EeEeeeeCCCC--C-CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025987 145 GIDPSSCLGIVEHVRLRCPNLE-FSGLMTIGMPD--Y-TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 212 (245)
Q Consensus 145 G~~~~e~~~~~~~i~~~~~~l~-l~Gl~TH~a~~--~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~ 212 (245)
|++++++.++++.++ ++++++ +.||++|.++. + +.....++++.++++.+++ .|+.. ..++.|+
T Consensus 227 Gi~~~e~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~-~G~~l--~~LDiGG 294 (648)
T 3n2o_A 227 GLSASQVLNVISRLK-KENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRT-LGANI--TYFDVGG 294 (648)
T ss_dssp CBCHHHHHHHHHHHH-HTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCS
T ss_pred cCCHHHHHHHHHHHH-hCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--cEEEeCC
Confidence 999999999999999 899997 99999999863 1 2334567778888888876 58753 7777553
No 40
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=99.53 E-value=3.2e-14 Score=128.81 Aligned_cols=148 Identities=7% Similarity=-0.006 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHHH-HHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSLI-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|+++|++|++.+++.+.. .+++++.++|++....+ +.+.+.|+ +|.|++..|+...++.++.+| ++.
T Consensus 10 d~~~l~~n~~~l~~~~~~---------~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~~~~~i--i~~ 77 (365)
T 3mt1_A 10 DKAKLTRNMERIAHVREK---------SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKET--HAY 77 (365)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHTTTSC-EEEESSHHHHHHHHHHTCSEE--EEE
T ss_pred eHHHHHHHHHHHHHHHhh---------cCCEEEEEehhcCCHHHHHHHHHhCC-eEEECCHHHHHHHHhhCCCce--EEE
Confidence 679999999999988742 36899999999887554 77778887 799999999998887654455 666
Q ss_pred ccC-ChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCC-------CceEEEEEeCCCCCCcccCChhhHHHHHH
Q 025987 85 GHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRK-------PLKVLVQVNTSGEESKSGIDPSSCLGIVE 156 (245)
Q Consensus 85 G~~-~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~-------~~~V~lkidtG~~m~R~G~~~~e~~~~~~ 156 (245)
|+. .+++++.+++ .++.+++||.++++.|++.+.+.... ....|.++|||...+|+|++++++.+.
T Consensus 78 ~~~k~~~el~~a~~----~g~~i~vds~~el~~l~~~a~~~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~~~~~~~~-- 151 (365)
T 3mt1_A 78 SVAYGDNEIDEVVS----HADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER-- 151 (365)
T ss_dssp ESCCCTTTHHHHHH----HCSEEEESSHHHHHHHGGGGTTSEEEEEECCC----------------CCSBCCHHHHHT--
T ss_pred CCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHhccCCEEEEEecCCCCCCCccccCCCCCCcCCCCHHHHhhh--
Confidence 765 4677888884 55678999999999999887642210 123466778883349999999876541
Q ss_pred HHHhcCCCeeEeEeeeeCCCC
Q 025987 157 HVRLRCPNLEFSGLMTIGMPD 177 (245)
Q Consensus 157 ~i~~~~~~l~l~Gl~TH~a~~ 177 (245)
.++ ++.||++|.++.
T Consensus 152 ----~l~--~~~Glh~HigSq 166 (365)
T 3mt1_A 152 ----VMD--RINGFMIHNNCE 166 (365)
T ss_dssp ----TGG--GCSEEEECCC--
T ss_pred ----ccC--CeEEEEEeCCCC
Confidence 233 699999999863
No 41
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=99.44 E-value=7.5e-13 Score=121.90 Aligned_cols=143 Identities=11% Similarity=0.018 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccChHH-HHHHHHcCCCeeecccHHHHHHhhcCCCCCceeeee
Q 025987 6 VEGAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKPVSL-IRQVYDAGHRSFGENYVQEIVDKAPQLPEDIKWHFV 84 (245)
Q Consensus 6 ~~~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg~~~-i~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~~~~l 84 (245)
|+++|++|++.+++.+.. .+++++.++|++.... ++.+.+.|+ +|.|++..|+...++.++.+| ++.
T Consensus 50 d~~~l~~n~~~l~~~~~~---------~~~~i~yAvKAN~~~~vl~~l~~~G~-G~dvaS~~El~~a~~~~~~~I--i~~ 117 (418)
T 3n29_A 50 EEDKLRKNCELLASVGEK---------SGAKVLLALKGFAFSGAMKIVGEYLK-GCTCSGLWEAKFAKEYMDKEI--HTY 117 (418)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHHHHSC-EEEESSHHHHHHHHHHTCSEE--EEE
T ss_pred eHHHHHHHHHHHHHhhhh---------cCCEEEEEEccCCCHHHHHHHHHcCC-eEEECCHHHHHHHHhhCCCCE--EEE
Confidence 679999999999988742 2679999999988755 477778885 699999999998887754456 677
Q ss_pred ccC-ChHHHHHHHccCCCccEEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeC------------CCCCCcccCChhhH
Q 025987 85 GHL-QSNKAKTLLGGVPNLDMVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDPSSC 151 (245)
Q Consensus 85 G~~-~~~~~~~~~~~~~~~~l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidt------------G~~m~R~G~~~~e~ 151 (245)
|+. .+++++.+++ .++.++|||.++++.|++.+. +.+|.|+||+ |...+|+|++++++
T Consensus 118 ~~~k~~~el~~A~~----~g~~i~vds~~EL~~l~~~a~-----~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~~~~~ 188 (418)
T 3n29_A 118 SPAFKEDEIGEIAS----LSHHIVFNSLAQFHKFQSKTQ-----KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDF 188 (418)
T ss_dssp ESSCCHHHHHHHHH----HCSEEEESSHHHHHHHGGGCT-----TSEEEEEBCCCCC----------CTTCCSSBCGGGG
T ss_pred CCCCCHHHHHHHHH----cCCeEEECCHHHHHHHHHhcC-----CCCEEEEEeCCCCCCCCcccccCCCCCcCcCCHHHH
Confidence 765 4677888884 566789999999999887654 4677777764 42339999999876
Q ss_pred HHHHHHHHhcCCCeeEeEeeeeCCCC
Q 025987 152 LGIVEHVRLRCPNLEFSGLMTIGMPD 177 (245)
Q Consensus 152 ~~~~~~i~~~~~~l~l~Gl~TH~a~~ 177 (245)
.+ . .++ ++.||.+|.++.
T Consensus 189 ~~-----~-~l~--~l~Glh~HigSq 206 (418)
T 3n29_A 189 EN-----V-DLN--AIEGLHFHALCE 206 (418)
T ss_dssp TT-----C-CCT--TCCEEECCCCSS
T ss_pred HH-----h-hcC--ceEEEEEecCCC
Confidence 43 2 333 789999999875
No 42
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=85.37 E-value=8.2 Score=31.68 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=87.9
Q ss_pred HHHHHHHHcCCCe--eeccc----------HHHHHHhhcCCCCCceeeeeccCChH-HHHHHHccCCCcc-EEEeeC--C
Q 025987 47 SLIRQVYDAGHRS--FGENY----------VQEIVDKAPQLPEDIKWHFVGHLQSN-KAKTLLGGVPNLD-MVEGVG--N 110 (245)
Q Consensus 47 ~~i~~~~~~G~~~--~~va~----------~~Ea~~lr~~~~~~i~~~~lG~~~~~-~~~~~~~~~~~~~-l~~~v~--s 110 (245)
+.++.+.+.|+++ +.+.. .+.+..+|+....++..|++.. +++ .++.+.+. ..+ +++-.. .
T Consensus 21 ~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~a--Gadgv~vh~e~~~ 97 (230)
T 1tqj_A 21 EEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKA--GADIISVHVEHNA 97 (230)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHH--TCSEEEEECSTTT
T ss_pred HHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHc--CCCEEEECccccc
Confidence 4456777889987 55531 2566667766544543355553 332 34444421 234 333333 2
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC-C-CCCcHHHHHHH
Q 025987 111 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-D-YTSTPENFRTL 188 (245)
Q Consensus 111 ~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~-~-~~~~~~~~~~~ 188 (245)
.+.....-+...+.|. .+.+ -++.+ .|.+. ++.+. ++..+.++||-++. + ..+.....+++
T Consensus 98 ~~~~~~~~~~i~~~g~-~~gv--~~~p~--------t~~e~---~~~~~---~~~D~v~~msv~pg~ggq~~~~~~~~~i 160 (230)
T 1tqj_A 98 SPHLHRTLCQIRELGK-KAGA--VLNPS--------TPLDF---LEYVL---PVCDLILIMSVNPGFGGQSFIPEVLPKI 160 (230)
T ss_dssp CTTHHHHHHHHHHTTC-EEEE--EECTT--------CCGGG---GTTTG---GGCSEEEEESSCC----CCCCGGGHHHH
T ss_pred chhHHHHHHHHHHcCC-cEEE--EEeCC--------CcHHH---HHHHH---hcCCEEEEEEeccccCCccCcHHHHHHH
Confidence 2444555556666776 5444 34433 11111 22222 35668889998885 2 22333455666
Q ss_pred HHHHHHHHHHhCCCCCCCee-eccCcc-cHHHHHHcCCCeeeeCccccCC
Q 025987 189 LNCRAEVCKALGMAEDQCEL-SMGMSG-DFEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 189 ~~~~~~l~~~~g~~~~~~~~-S~g~s~-~~~~~~~~~~d~VR~G~~lyG~ 236 (245)
.++.+...+ .|++. ... -.|.+. +.....+.|.|.+=+|+++|+.
T Consensus 161 ~~lr~~~~~-~~~~~--~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a 207 (230)
T 1tqj_A 161 RALRQMCDE-RGLDP--WIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNA 207 (230)
T ss_dssp HHHHHHHHH-HTCCC--EEEEESSCCTTTTHHHHHHTCCEEEESHHHHTS
T ss_pred HHHHHHHHh-cCCCC--cEEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence 666665554 35542 222 234332 2333346699999999999985
No 43
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=72.85 E-value=4.7 Score=36.18 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=48.3
Q ss_pred eEEEEEeCCCCCCcccCC--hh--hHHHHHHHHHhcCCCeeEeEeeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCC---
Q 025987 130 KVLVQVNTSGEESKSGID--PS--SCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMA--- 202 (245)
Q Consensus 130 ~V~lkidtG~~m~R~G~~--~~--e~~~~~~~i~~~~~~l~l~Gl~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~--- 202 (245)
+...++|.- |.++||+ |+ ...+..++|. .....-+..|||=+-.-++......++|.++.+..++ +|+.
T Consensus 17 ~~~~~~~~~--M~~LGiSvYp~~~~~~~~~~Yi~-~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~-~g~~vi~ 92 (385)
T 1x7f_A 17 NLYFQSNAM--ERKLGISLYPEHSTKEKDMAYIS-AAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKD-NNMEVIL 92 (385)
T ss_dssp --------C--CCEEEEEECGGGSCHHHHHHHHH-HHHTTTEEEEEEEECCC--------HHHHHHHHHHHH-TTCEEEE
T ss_pred ChhhhHHHH--HHheEEEEcCCCCCHHHHHHHHH-HHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 345677776 9999986 33 3455556665 5555678999886632111123466778888887777 5864
Q ss_pred -CCCCeee-ccCc-ccHHHHHHcCCCeeeeC
Q 025987 203 -EDQCELS-MGMS-GDFEQAIEMGSTSVRIG 230 (245)
Q Consensus 203 -~~~~~~S-~g~s-~~~~~~~~~~~d~VR~G 230 (245)
.+...+. .|.| .++....+.|.+.+|.=
T Consensus 93 DVsp~~~~~Lg~s~~dl~~f~~lGi~gLRLD 123 (385)
T 1x7f_A 93 DVAPAVFDQLGISYSDLSFFAELGADGIRLD 123 (385)
T ss_dssp EECTTCC------CCCTHHHHHHTCSEEEES
T ss_pred ECCHHHHHHcCCCHHHHHHHHHcCCCEEEEc
Confidence 1112332 4544 33333346699999974
No 44
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=64.96 E-value=53 Score=26.41 Aligned_cols=178 Identities=13% Similarity=0.116 Sum_probs=88.4
Q ss_pred cEEEEEecc--cC-h-HHHHHHHHcCCCeeecc--------c----HHHHHHhhcCCCCCceeeeeccCChHHHHHHHcc
Q 025987 35 IRVVAVSKT--KP-V-SLIRQVYDAGHRSFGEN--------Y----VQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGG 98 (245)
Q Consensus 35 ~~l~aVvKa--Hg-~-~~i~~~~~~G~~~~~va--------~----~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~ 98 (245)
..+.|=+=+ .. . +.++.+.+.|++++.+- . ++.+.++|+....++..+++..-+.+.++.+.+.
T Consensus 7 ~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~a 86 (228)
T 1h1y_A 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKA 86 (228)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHH
T ss_pred CeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHc
Confidence 345555555 22 2 44567788899985443 2 5777778776533433345543223345555431
Q ss_pred CCCccEE--EeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcC-CCeeEeEeeeeCC
Q 025987 99 VPNLDMV--EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC-PNLEFSGLMTIGM 175 (245)
Q Consensus 99 ~~~~~l~--~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~-~~l~l~Gl~TH~a 175 (245)
..+.+ +.-.+.+.+...-+..++.|. + +-+-++..+ +.+. ++.+. .. ....+.++||.++
T Consensus 87 --gad~v~vH~~~~~~~~~~~~~~i~~~g~-~--igv~~~p~t-------~~e~----~~~~~-~~~~~~d~vl~~sv~p 149 (228)
T 1h1y_A 87 --GASGFTFHIEVSRDNWQELIQSIKAKGM-R--PGVSLRPGT-------PVEE----VFPLV-EAENPVELVLVMTVEP 149 (228)
T ss_dssp --TCSEEEEEGGGCTTTHHHHHHHHHHTTC-E--EEEEECTTS-------CGGG----GHHHH-HSSSCCSEEEEESSCT
T ss_pred --CCCEEEECCCCcccHHHHHHHHHHHcCC-C--EEEEEeCCC-------CHHH----HHHHH-hcCCCCCEEEEEeecC
Confidence 24544 322222221333344445565 4 334444331 1122 22333 20 0356888888776
Q ss_pred C-C-CCCcHHHHHHHHHHHHHHHHHh-CCCCCCCeeeccCccc-HHHHHHcCCCeeeeCccccCC
Q 025987 176 P-D-YTSTPENFRTLLNCRAEVCKAL-GMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 176 ~-~-~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~S~g~s~~-~~~~~~~~~d~VR~G~~lyG~ 236 (245)
. + ..+....++++.+ +++.. +++ ..+..|-+.. .......|.|.+=+|+++|+.
T Consensus 150 g~~g~~~~~~~l~~i~~----~~~~~~~~p---i~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~ 207 (228)
T 1h1y_A 150 GFGGQKFMPEMMEKVRA----LRKKYPSLD---IEVDGGLGPSTIDVAASAGANCIVAGSSIFGA 207 (228)
T ss_dssp TCSSCCCCGGGHHHHHH----HHHHCTTSE---EEEESSCSTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred CCCcccCCHHHHHHHHH----HHHhcCCCC---EEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence 4 2 2222333444443 44321 111 2335665443 333446699999999999985
No 45
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=60.07 E-value=73 Score=26.38 Aligned_cols=170 Identities=11% Similarity=0.068 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCCeeec----cc--------HHHHHHhhcCC-CCCceeeeeccCChHHHHHHHccCCCccE-EEeeCCHH
Q 025987 47 SLIRQVYDAGHRSFGE----NY--------VQEIVDKAPQL-PEDIKWHFVGHLQSNKAKTLLGGVPNLDM-VEGVGNEK 112 (245)
Q Consensus 47 ~~i~~~~~~G~~~~~v----a~--------~~Ea~~lr~~~-~~~i~~~~lG~~~~~~~~~~~~~~~~~~l-~~~v~s~~ 112 (245)
+.++.+.++|++++=+ .. .+--..+|+.. ..++-.|+.-.-+...++.+++. ..++ ++-....+
T Consensus 44 ~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~a--GAd~itvH~Ea~~ 121 (246)
T 3inp_A 44 DDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKA--GATSIVFHPEASE 121 (246)
T ss_dssp HHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHH--TCSEEEECGGGCS
T ss_pred HHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHc--CCCEEEEccccch
Confidence 4467788899986433 11 12233355554 44543355433233455555531 2443 33233223
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCC-CC-CCCcHHHHHHHHH
Q 025987 113 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM-PD-YTSTPENFRTLLN 190 (245)
Q Consensus 113 ~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a-~~-~~~~~~~~~~~~~ 190 (245)
.+.+.-+..++.|. ++. |-++.++ +.+.+ +.+. +.+.+.-+||-.+ .+ ..+....+++..+
T Consensus 122 ~~~~~i~~ir~~G~-k~G--valnp~T-------p~e~l----~~~l---~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~ 184 (246)
T 3inp_A 122 HIDRSLQLIKSFGI-QAG--LALNPAT-------GIDCL----KYVE---SNIDRVLIMSVNPGFGGQKFIPAMLDKAKE 184 (246)
T ss_dssp CHHHHHHHHHTTTS-EEE--EEECTTC-------CSGGG----TTTG---GGCSEEEEECSCTTC--CCCCTTHHHHHHH
T ss_pred hHHHHHHHHHHcCC-eEE--EEecCCC-------CHHHH----HHHH---hcCCEEEEeeecCCCCCcccchHHHHHHHH
Confidence 44444455666776 444 4566552 11222 2222 2345666787443 32 2344456677777
Q ss_pred HHHHHHHHhCCCCCCCeeeccCccc-HHHHHHcCCCeeeeCccccCCC
Q 025987 191 CRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPR 237 (245)
Q Consensus 191 ~~~~l~~~~g~~~~~~~~S~g~s~~-~~~~~~~~~d~VR~G~~lyG~~ 237 (245)
+.+.+.++ |.+. ...+-.|.+.. .+...+.|.|.+=.|+++|+..
T Consensus 185 lr~~~~~~-~~~~-~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~ 230 (246)
T 3inp_A 185 ISKWISST-DRDI-LLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSD 230 (246)
T ss_dssp HHHHHHHH-TSCC-EEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSS
T ss_pred HHHHHHhc-CCCe-eEEEECCcCHHHHHHHHHcCCCEEEEehHHhCCC
Confidence 66666553 6542 12234554433 3445578999999999999854
No 46
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=57.45 E-value=77 Score=25.84 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=84.9
Q ss_pred HHHHHHHcCCCe--eeccc----------HHHHHHhhcCCCCCceeeeeccCChHH-HHHHHccCCCccEE-EeeCC-HH
Q 025987 48 LIRQVYDAGHRS--FGENY----------VQEIVDKAPQLPEDIKWHFVGHLQSNK-AKTLLGGVPNLDMV-EGVGN-EK 112 (245)
Q Consensus 48 ~i~~~~~~G~~~--~~va~----------~~Ea~~lr~~~~~~i~~~~lG~~~~~~-~~~~~~~~~~~~l~-~~v~s-~~ 112 (245)
.++.+ +.|+++ +-|-. +.-...+|+....++-.|++-. +|++ ++.+++. ..+++ +-... ..
T Consensus 18 ~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~-dp~~~i~~~~~a--GAd~itvh~Ea~~~ 93 (231)
T 3ctl_A 18 QIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVT-RPQDYIAQLARA--GADFITLHPETING 93 (231)
T ss_dssp HHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESS-CGGGTHHHHHHH--TCSEEEECGGGCTT
T ss_pred HHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEec-CHHHHHHHHHHc--CCCEEEECcccCCc
Confidence 34555 777776 33311 3344445655444543355543 3443 5555531 24443 22222 12
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCC-CCC-CCcHHHHHHHHH
Q 025987 113 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM-PDY-TSTPENFRTLLN 190 (245)
Q Consensus 113 ~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a-~~~-~~~~~~~~~~~~ 190 (245)
.+.++-+..++.|. ++.| -++.++ +.+.+ +.+. +.+.+.-+||--+ .+. .+....+++..+
T Consensus 94 ~~~~~i~~i~~~G~-k~gv--~lnp~t-------p~~~~----~~~l---~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~ 156 (231)
T 3ctl_A 94 QAFRLIDEIRRHDM-KVGL--ILNPET-------PVEAM----KYYI---HKADKITVMTVDPGFAGQPFIPEMLDKLAE 156 (231)
T ss_dssp THHHHHHHHHHTTC-EEEE--EECTTC-------CGGGG----TTTG---GGCSEEEEESSCTTCSSCCCCTTHHHHHHH
T ss_pred cHHHHHHHHHHcCC-eEEE--EEECCC-------cHHHH----HHHH---hcCCEEEEeeeccCcCCccccHHHHHHHHH
Confidence 34566666777776 5444 445541 11222 2222 2455777777555 332 344455666666
Q ss_pred HHHHHHHHhCCCCCCCeeeccCcc-cHHHHHHcCCCeeeeC-ccccCC
Q 025987 191 CRAEVCKALGMAEDQCELSMGMSG-DFEQAIEMGSTSVRIG-STIFGP 236 (245)
Q Consensus 191 ~~~~l~~~~g~~~~~~~~S~g~s~-~~~~~~~~~~d~VR~G-~~lyG~ 236 (245)
+.+.+.+ .|++.. ...-.|-+. +.....+.|.|.+=.| +++|+.
T Consensus 157 lr~~~~~-~~~~~~-I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~ 202 (231)
T 3ctl_A 157 LKAWRER-EGLEYE-IEVDGSCNQATYEKLMAAGADVFIVGTSGLFNH 202 (231)
T ss_dssp HHHHHHH-HTCCCE-EEEESCCSTTTHHHHHHHTCCEEEECTTTTGGG
T ss_pred HHHHHhc-cCCCce-EEEECCcCHHHHHHHHHcCCCEEEEccHHHhCC
Confidence 6666555 365420 122344332 3444457799999999 999984
No 47
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=54.71 E-value=42 Score=27.59 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=49.9
Q ss_pred cChHHHHHHHHcCCCeeecc------------------------cHHHHHHhhcCCCCCceeeee-ccCChHHHHHHHcc
Q 025987 44 KPVSLIRQVYDAGHRSFGEN------------------------YVQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLLGG 98 (245)
Q Consensus 44 Hg~~~i~~~~~~G~~~~~va------------------------~~~Ea~~lr~~~~~~i~~~~l-G~~~~~~~~~~~~~ 98 (245)
.|+..++.+..+|+..|.+. +.+.+.+....+...+.+..+ ..+..+.+..+++
T Consensus 39 lG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~- 117 (251)
T 1zud_1 39 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVA- 117 (251)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHh-
Confidence 66666788888999888763 333333322222222322222 3445566666663
Q ss_pred CCCccEEE-eeCCHHHHHHHHHHHHhcCC
Q 025987 99 VPNLDMVE-GVGNEKIANHLDKAVSNLGR 126 (245)
Q Consensus 99 ~~~~~l~~-~v~s~~~a~~l~~~a~~~~~ 126 (245)
.+|+++ +.|+.+.-..|++.+.+.++
T Consensus 118 --~~DvVi~~~d~~~~r~~l~~~~~~~~~ 144 (251)
T 1zud_1 118 --RADVVLDCTDNMATRQEINAACVALNT 144 (251)
T ss_dssp --HCSEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred --cCCEEEECCCCHHHHHHHHHHHHHhCC
Confidence 478766 67888887889999988776
No 48
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=53.15 E-value=1e+02 Score=25.92 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=94.3
Q ss_pred CcEEEEEecc----c-------ChHH-HHHHHHcCCCeeec--------ccHHHHHHhhcCCCCCceeeee-ccCChHHH
Q 025987 34 QIRVVAVSKT----K-------PVSL-IRQVYDAGHRSFGE--------NYVQEIVDKAPQLPEDIKWHFV-GHLQSNKA 92 (245)
Q Consensus 34 ~~~l~aVvKa----H-------g~~~-i~~~~~~G~~~~~v--------a~~~Ea~~lr~~~~~~i~~~~l-G~~~~~~~ 92 (245)
...++|=+|- . .... ++...+.|++++-| .+++.....|+....|| +.= +.+++.++
T Consensus 58 ~~~vIaE~KraSPSkG~i~~~~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPV--l~Kdfi~d~~qi 135 (272)
T 3tsm_A 58 QFALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPA--LRKDFLFDPYQV 135 (272)
T ss_dssp CCEEEEEECSEETTTEESCSSCCHHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCE--EEESCCCSTHHH
T ss_pred CceEEEEeccCCCCCCccCCCCCHHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCE--EECCccCCHHHH
Confidence 4689999998 1 2233 35566889999988 67777777777766665 221 22556666
Q ss_pred HHHHccCCCccEEE---eeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeE
Q 025987 93 KTLLGGVPNLDMVE---GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 169 (245)
Q Consensus 93 ~~~~~~~~~~~l~~---~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~G 169 (245)
.++... ..+.+. +.-+.+.++.+-+.+.+.|. .+++++.+ .+|+ +... .+ +..+.|
T Consensus 136 ~ea~~~--GAD~VlLi~a~L~~~~l~~l~~~a~~lGl---~~lvevh~----------~eEl----~~A~-~~-ga~iIG 194 (272)
T 3tsm_A 136 YEARSW--GADCILIIMASVDDDLAKELEDTAFALGM---DALIEVHD----------EAEM----ERAL-KL-SSRLLG 194 (272)
T ss_dssp HHHHHT--TCSEEEEETTTSCHHHHHHHHHHHHHTTC---EEEEEECS----------HHHH----HHHT-TS-CCSEEE
T ss_pred HHHHHc--CCCEEEEcccccCHHHHHHHHHHHHHcCC---eEEEEeCC----------HHHH----HHHH-hc-CCCEEE
Confidence 666431 244333 33455677888888888765 66666653 2333 2222 22 456777
Q ss_pred eeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeee-ccC-cc-cHHHHHHcCCCeeeeCccccCC
Q 025987 170 LMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELS-MGM-SG-DFEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 170 l~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S-~g~-s~-~~~~~~~~~~d~VR~G~~lyG~ 236 (245)
+-.-.-.+...+. +...++... ++.....++ +|. |+ +.....+.|.+.|=+|.+|+-.
T Consensus 195 innr~l~t~~~dl---~~~~~L~~~------ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~ 255 (272)
T 3tsm_A 195 VNNRNLRSFEVNL---AVSERLAKM------APSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQ 255 (272)
T ss_dssp EECBCTTTCCBCT---HHHHHHHHH------SCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTS
T ss_pred ECCCCCccCCCCh---HHHHHHHHh------CCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 7422111112222 222232222 211234455 443 22 1222345799999999999864
No 49
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=46.88 E-value=1e+02 Score=25.31 Aligned_cols=72 Identities=8% Similarity=0.038 Sum_probs=42.8
Q ss_pred CCeeEeEeeeeCC-CCC-CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc-cHHHHHH--cCCCeeeeCccccCC
Q 025987 163 PNLEFSGLMTIGM-PDY-TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG-DFEQAIE--MGSTSVRIGSTIFGP 236 (245)
Q Consensus 163 ~~l~l~Gl~TH~a-~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S~g~s~-~~~~~~~--~~~d~VR~G~~lyG~ 236 (245)
+.+.+.++||--+ .+. .+....++++.++.+.+.+ .|++.+ ...-.|.+. +.+...+ .|.|.+=.|+++|+.
T Consensus 147 ~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~-~~~~~~-I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 147 DQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGN-RRVEKL-INIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp TTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGG-GGGGCE-EEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred hcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHh-cCCCce-EEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 4677888887555 332 3444566677666665543 243310 112344332 2334457 899999999999986
No 50
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=46.65 E-value=80 Score=27.92 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=61.4
Q ss_pred CcEEEEEecc--cCh----HHHHHHHHcCCCe--eecccHHHHHHhhcC---CCCCceeeeeccCChHHHHHHHcc-CCC
Q 025987 34 QIRVVAVSKT--KPV----SLIRQVYDAGHRS--FGENYVQEIVDKAPQ---LPEDIKWHFVGHLQSNKAKTLLGG-VPN 101 (245)
Q Consensus 34 ~~~l~aVvKa--Hg~----~~i~~~~~~G~~~--~~va~~~Ea~~lr~~---~~~~i~~~~lG~~~~~~~~~~~~~-~~~ 101 (245)
.+.+-..+.+ ... ..++.+.++|++. ++|.+.++|..+..- ...|+ ..=-++++..+..+++. +..
T Consensus 31 Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPl--vaDiHf~~~lal~a~e~G~dk 108 (366)
T 3noy_A 31 PIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPV--IADIHFAPSYAFLSMEKGVHG 108 (366)
T ss_dssp CCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCE--EEECCSCHHHHHHHHHTTCSE
T ss_pred cEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCE--EEeCCCCHHHHHHHHHhCCCe
Confidence 4666666666 433 3345677899886 888887777665432 33343 22235677777777742 111
Q ss_pred ccEEEe-eCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 025987 102 LDMVEG-VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG 139 (245)
Q Consensus 102 ~~l~~~-v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~ 139 (245)
.++-+. +.+.+..+.+-+.|++.++ +++ |=||.|.
T Consensus 109 lRINPGNig~~~~~~~vv~~ak~~~~-piR--IGvN~GS 144 (366)
T 3noy_A 109 IRINPGNIGKEEIVREIVEEAKRRGV-AVR--IGVNSGS 144 (366)
T ss_dssp EEECHHHHSCHHHHHHHHHHHHHHTC-EEE--EEEEGGG
T ss_pred EEECCcccCchhHHHHHHHHHHHcCC-CEE--EecCCcC
Confidence 122111 4556777888888999887 555 5789883
No 51
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=43.81 E-value=1.6e+02 Score=25.37 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=56.9
Q ss_pred HHHHHHcCCCeeec-----------------ccHHHHH-HhhcCCCCCceeeee---ccCChHHHHHHHcc-CCCccEEE
Q 025987 49 IRQVYDAGHRSFGE-----------------NYVQEIV-DKAPQLPEDIKWHFV---GHLQSNKAKTLLGG-VPNLDMVE 106 (245)
Q Consensus 49 i~~~~~~G~~~~~v-----------------a~~~Ea~-~lr~~~~~~i~~~~l---G~~~~~~~~~~~~~-~~~~~l~~ 106 (245)
++.+.++|++.+=+ .+..|.+ .+++..+. +.+.++ |....+.++.+.+. ++...+-.
T Consensus 36 ~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~-~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~ 114 (345)
T 1nvm_A 36 ARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISH-AQIATLLLPGIGSVHDLKNAYQAGARVVRVAT 114 (345)
T ss_dssp HHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSS-SEEEEEECBTTBCHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCC-CEEEEEecCCcccHHHHHHHHhCCcCEEEEEE
Confidence 35666789887655 3455554 34444332 222444 43346677766642 11122333
Q ss_pred eeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcC
Q 025987 107 GVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 162 (245)
Q Consensus 107 ~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~ 162 (245)
.+...+.++..-+.+++.|. .+.+.+. .. ...+++.+.++++.+. .+
T Consensus 115 ~~s~~~~~~~~i~~ak~~G~-~v~~~~~--~a-----~~~~~e~~~~ia~~~~-~~ 161 (345)
T 1nvm_A 115 HCTEADVSKQHIEYARNLGM-DTVGFLM--MS-----HMIPAEKLAEQGKLME-SY 161 (345)
T ss_dssp ETTCGGGGHHHHHHHHHHTC-EEEEEEE--ST-----TSSCHHHHHHHHHHHH-HH
T ss_pred eccHHHHHHHHHHHHHHCCC-EEEEEEE--eC-----CCCCHHHHHHHHHHHH-HC
Confidence 33333566666677888886 5554432 22 1346678888888887 55
No 52
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=41.26 E-value=85 Score=25.83 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=28.9
Q ss_pred cChHHHHHHHHcCCCeeecccH--------------HHHHHhhcCCCCCceeeeeccCChHHHHHHHc
Q 025987 44 KPVSLIRQVYDAGHRSFGENYV--------------QEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLG 97 (245)
Q Consensus 44 Hg~~~i~~~~~~G~~~~~va~~--------------~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~ 97 (245)
|..+++..+.+.|+|+++++.+ +....+++....++++..+|.+.++.+..+.+
T Consensus 143 ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~ 210 (243)
T 3o63_A 143 HDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLD 210 (243)
T ss_dssp CSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHH
T ss_pred CCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHH
Confidence 7766666666778888877432 11122222211123235666677777777664
No 53
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=39.17 E-value=1.5e+02 Score=23.96 Aligned_cols=164 Identities=9% Similarity=0.002 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCCee--ec--c----c----HHHHHHhhcCC-CCCceeeeeccCChH-HHHHHHccCCCccEE-EeeCCH
Q 025987 47 SLIRQVYDAGHRSF--GE--N----Y----VQEIVDKAPQL-PEDIKWHFVGHLQSN-KAKTLLGGVPNLDMV-EGVGNE 111 (245)
Q Consensus 47 ~~i~~~~~~G~~~~--~v--a----~----~~Ea~~lr~~~-~~~i~~~~lG~~~~~-~~~~~~~~~~~~~l~-~~v~s~ 111 (245)
+.++.+.+.|++++ =| . . +.....+|+.. ..++--|++- .+|. .+..++ + .+++ +-....
T Consensus 22 ~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv-~dp~~~i~~~~---~-Ad~itvH~ea~ 96 (227)
T 1tqx_A 22 EETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMV-EYPEKYVPLLK---T-SNQLTFHFEAL 96 (227)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEES-SCGGGGGGGCT---T-SSEEEEEGGGG
T ss_pred HHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEE-cCHHHHHHHHH---h-CCEEEEeecCC
Confidence 44667778898874 22 1 1 44555566665 3444335543 2343 333333 2 4543 222222
Q ss_pred H-HHHHHHH---HHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeCCC-CC-CCcHHHH
Q 025987 112 K-IANHLDK---AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY-TSTPENF 185 (245)
Q Consensus 112 ~-~a~~l~~---~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~a~-~~-~~~~~~~ 185 (245)
. ...+.-+ ..++.|. ++.| -++.++ +.+. ++.+. .+..+...-+||-.+. +. .+....+
T Consensus 97 ~~~~~~~i~~~~~i~~~G~-k~gv--alnp~t-------p~~~----~~~~l-~~g~~D~VlvmsV~pGf~gq~f~~~~l 161 (227)
T 1tqx_A 97 NEDTERCIQLAKEIRDNNL-WCGI--SIKPKT-------DVQK----LVPIL-DTNLINTVLVMTVEPGFGGQSFMHDMM 161 (227)
T ss_dssp TTCHHHHHHHHHHHHTTTC-EEEE--EECTTS-------CGGG----GHHHH-TTTCCSEEEEESSCTTCSSCCCCGGGH
T ss_pred ccCHHHHHHHHHHHHHcCC-eEEE--EeCCCC-------cHHH----HHHHh-hcCCcCEEEEeeeccCCCCcccchHHH
Confidence 2 3344444 6666776 4443 445441 1222 34444 3225677778886653 32 3334445
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeeeccCccc-HHHHHHcCCCeeeeCccccCC
Q 025987 186 RTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 186 ~~~~~~~~~l~~~~g~~~~~~~~S~g~s~~-~~~~~~~~~d~VR~G~~lyG~ 236 (245)
++..++.+.+. ++. .....|-+.. .+...+.|.|.+=.|+++|+.
T Consensus 162 ~ki~~lr~~~~---~~~---I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~ 207 (227)
T 1tqx_A 162 GKVSFLRKKYK---NLN---IQVDGGLNIETTEISASHGANIIVAGTSIFNA 207 (227)
T ss_dssp HHHHHHHHHCT---TCE---EEEESSCCHHHHHHHHHHTCCEEEESHHHHTC
T ss_pred HHHHHHHHhcc---CCe---EEEECCCCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 55554333221 111 2234554433 334457799999999999985
No 54
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=33.66 E-value=84 Score=27.43 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecccC------h----HH-HHHHHHcCCCeeeccc----------HHH
Q 025987 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKTKP------V----SL-IRQVYDAGHRSFGENY----------VQE 67 (245)
Q Consensus 9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKaHg------~----~~-i~~~~~~G~~~~~va~----------~~E 67 (245)
.+.++.+.+.+.++.+.+.++..+=.++|-+.-..++ . .. ++.+.+.|++++.+.. .+-
T Consensus 206 slenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~ 285 (364)
T 1vyr_A 206 SVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAF 285 (364)
T ss_dssp SHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHH
T ss_pred chhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHH
Confidence 3677888888888888888763221222222211122 1 12 3667789999998874 222
Q ss_pred HHHhhcCCCCCceeeeeccCChHHHHHHHc
Q 025987 68 IVDKAPQLPEDIKWHFVGHLQSNKAKTLLG 97 (245)
Q Consensus 68 a~~lr~~~~~~i~~~~lG~~~~~~~~~~~~ 97 (245)
+..+|+....|+ ...|.+.++++..+++
T Consensus 286 ~~~v~~~~~iPv--i~~Ggit~~~a~~~l~ 313 (364)
T 1vyr_A 286 RQKVRERFHGVI--IGAGAYTAEKAEDLIG 313 (364)
T ss_dssp HHHHHHHCCSEE--EEESSCCHHHHHHHHH
T ss_pred HHHHHHHCCCCE--EEECCcCHHHHHHHHH
Confidence 344555554454 4456667777777774
No 55
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=33.18 E-value=2.1e+02 Score=23.86 Aligned_cols=171 Identities=14% Similarity=0.174 Sum_probs=92.9
Q ss_pred CCcEEEEEecc----cC-----hHHHHHHHHcCCCeeeccc--------HHHHHHhhcCCCCCc-eeeeeccCChHHHHH
Q 025987 33 EQIRVVAVSKT----KP-----VSLIRQVYDAGHRSFGENY--------VQEIVDKAPQLPEDI-KWHFVGHLQSNKAKT 94 (245)
Q Consensus 33 ~~~~l~aVvKa----Hg-----~~~i~~~~~~G~~~~~va~--------~~Ea~~lr~~~~~~i-~~~~lG~~~~~~~~~ 94 (245)
....++|=+|. .| ...+...++.|+.++.|-| ++.....|+....|| .--| .+.+-++.+
T Consensus 44 ~~~~iIAEiKraSPSkg~i~~dp~~iA~~~~~GA~aiSVLTd~~~F~Gs~~~L~~vr~~v~lPvLrKDF--iid~yQI~e 121 (258)
T 4a29_A 44 NITAIIAVYERKSPSGLDVERDPIEYAKFMERYAVGLSITTEEKYFNGSYETLRKIASSVSIPILMSDF--IVKESQIDD 121 (258)
T ss_dssp TCCCEEEEECSBCTTSCBCCCCHHHHHHHHTTTCSEEEEECCSTTTCCCHHHHHHHHTTCSSCEEEESC--CCSHHHHHH
T ss_pred CCcEEEEEEecCCCCCCCccCCHHHHHHHHhCCCeEEEEeCCCCCCCCCHHHHHHHHHhcCCCEeeccc--cccHHHHHH
Confidence 34579999998 22 2334445678999988865 455555666655564 1111 134444444
Q ss_pred HHccCCCcc---EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEee
Q 025987 95 LLGGVPNLD---MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 171 (245)
Q Consensus 95 ~~~~~~~~~---l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~ 171 (245)
+... ..| ++..+-+.++++.|.+.|.+.|. .|+++|.+- +|+.. .+. + +-++.|+-
T Consensus 122 Ar~~--GADaILLI~a~L~~~~l~~l~~~A~~lGl---~~LvEVh~~----------~El~r---Al~--~-~a~iIGIN 180 (258)
T 4a29_A 122 AYNL--GADTVLLIVKILTERELESLLEYARSYGM---EPLILINDE----------NDLDI---ALR--I-GARFIGIM 180 (258)
T ss_dssp HHHH--TCSEEEEEGGGSCHHHHHHHHHHHHHTTC---CCEEEESSH----------HHHHH---HHH--T-TCSEEEEC
T ss_pred HHHc--CCCeeehHHhhcCHHHHHHHHHHHHHHhH---HHHHhcchH----------HHHHH---Hhc--C-CCcEEEEe
Confidence 4210 245 44556677888999999998875 677787653 34322 222 2 35677874
Q ss_pred eeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeee-ccCcc--cHHHHHHcCCCeeeeCccccC
Q 025987 172 TIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELS-MGMSG--DFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 172 TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S-~g~s~--~~~~~~~~~~d~VR~G~~lyG 235 (245)
.---.+.+.+...+.+ |.. -++.....+| +|... +.......|+|.|=+|.++.-
T Consensus 181 NRnL~tf~vdl~~t~~-------L~~--~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr 238 (258)
T 4a29_A 181 SRDFETGEINKENQRK-------LIS--MIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMR 238 (258)
T ss_dssp SBCTTTCCBCHHHHHH-------HHT--TSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHH
T ss_pred CCCccccccCHHHHHH-------HHh--hCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 2111111122222222 222 2332234445 55432 222234678999999998864
No 56
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=31.33 E-value=2.3e+02 Score=23.59 Aligned_cols=171 Identities=13% Similarity=0.148 Sum_probs=90.1
Q ss_pred CcEEEEEecc----cC-------hHHH-HHHHHcCCCeeecc--------cHHHHHHhhcCCCCCceeeeec-cCChHHH
Q 025987 34 QIRVVAVSKT----KP-------VSLI-RQVYDAGHRSFGEN--------YVQEIVDKAPQLPEDIKWHFVG-HLQSNKA 92 (245)
Q Consensus 34 ~~~l~aVvKa----Hg-------~~~i-~~~~~~G~~~~~va--------~~~Ea~~lr~~~~~~i~~~~lG-~~~~~~~ 92 (245)
+..++|=+|- .| ...+ +...+.|++++-|. +++-....|+....|+ +.-+ .+.+.++
T Consensus 51 ~~~~IaE~K~asPs~g~i~~~~~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPv--l~kdfiid~~qv 128 (272)
T 3qja_A 51 GIGVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPV--LRKDFVVQPYQI 128 (272)
T ss_dssp SCEEEEEEC-------------CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCE--EEESCCCSHHHH
T ss_pred CCeEEEEEecCCCCCCccCCCCCHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCE--EECccccCHHHH
Confidence 5789999998 22 2233 55567899999996 3455555566655565 2323 2445457
Q ss_pred HHHHccCCCccEEEe---eCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeE
Q 025987 93 KTLLGGVPNLDMVEG---VGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSG 169 (245)
Q Consensus 93 ~~~~~~~~~~~l~~~---v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~G 169 (245)
..+... ..+.++. .-+.+.++.+.+.+.+.|. .+++.+.+ ++|+.... . + +..+.|
T Consensus 129 ~~A~~~--GAD~VlLi~a~l~~~~l~~l~~~a~~lGl---~~lvev~t----------~ee~~~A~---~--~-Gad~IG 187 (272)
T 3qja_A 129 HEARAH--GADMLLLIVAALEQSVLVSMLDRTESLGM---TALVEVHT----------EQEADRAL---K--A-GAKVIG 187 (272)
T ss_dssp HHHHHT--TCSEEEEEGGGSCHHHHHHHHHHHHHTTC---EEEEEESS----------HHHHHHHH---H--H-TCSEEE
T ss_pred HHHHHc--CCCEEEEecccCCHHHHHHHHHHHHHCCC---cEEEEcCC----------HHHHHHHH---H--C-CCCEEE
Confidence 766531 3565543 2346667777788887765 55555532 34443222 2 2 456777
Q ss_pred eeeeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeee-ccCc-c-cHHHHHHcCCCeeeeCccccCC
Q 025987 170 LMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELS-MGMS-G-DFEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 170 l~TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S-~g~s-~-~~~~~~~~~~d~VR~G~~lyG~ 236 (245)
+-.-.......+. +.+.+ |.+. ++.....++ +|.+ . +.......|.+.|=+|.+||..
T Consensus 188 v~~r~l~~~~~dl---~~~~~----l~~~--v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a 248 (272)
T 3qja_A 188 VNARDLMTLDVDR---DCFAR----IAPG--LPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTS 248 (272)
T ss_dssp EESBCTTTCCBCT---THHHH----HGGG--SCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred ECCCcccccccCH---HHHHH----HHHh--CcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 7521111111111 22222 3221 211234454 4433 2 2223346799999999999864
No 57
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=30.53 E-value=2.1e+02 Score=23.03 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=86.1
Q ss_pred EEEEEecc------cChHH---H-HHHHHcCCCeeecccHHHHHHhhcCCCCCce--e--------eeeccCChHHHHHH
Q 025987 36 RVVAVSKT------KPVSL---I-RQVYDAGHRSFGENYVQEIVDKAPQLPEDIK--W--------HFVGHLQSNKAKTL 95 (245)
Q Consensus 36 ~l~aVvKa------Hg~~~---i-~~~~~~G~~~~~va~~~Ea~~lr~~~~~~i~--~--------~~lG~~~~~~~~~~ 95 (245)
+|+...-+ |+... + +...+.|+.++-+.+.++..+.|+....|+. + .++++ ..+++..+
T Consensus 19 ~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~-~~~~i~~~ 97 (232)
T 3igs_A 19 GLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITP-FLDDVDAL 97 (232)
T ss_dssp CEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEESHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSC-SHHHHHHH
T ss_pred CEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEECCHHHHHHHHHhcCCCEEEEEeecCCCcceEeCc-cHHHHHHH
Confidence 46666665 55532 2 4456789999999999998888887666641 0 12222 22456665
Q ss_pred HccCCCccEEEeeC----CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEee
Q 025987 96 LGGVPNLDMVEGVG----NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 171 (245)
Q Consensus 96 ~~~~~~~~l~~~v~----s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~ 171 (245)
.+. ..+++.... +++.++.+-+.+++.+. .+. +++. ..+++ +.+. +. +..+.|+-
T Consensus 98 ~~~--Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~---~v~--~~v~--------t~eea----~~a~-~~-Gad~Ig~~ 156 (232)
T 3igs_A 98 AQA--GAAIIAVDGTARQRPVAVEALLARIHHHHL---LTM--ADCS--------SVDDG----LACQ-RL-GADIIGTT 156 (232)
T ss_dssp HHH--TCSEEEEECCSSCCSSCHHHHHHHHHHTTC---EEE--EECC--------SHHHH----HHHH-HT-TCSEEECT
T ss_pred HHc--CCCEEEECccccCCHHHHHHHHHHHHHCCC---EEE--EeCC--------CHHHH----HHHH-hC-CCCEEEEc
Confidence 531 256554322 34556666666766554 343 3332 12333 2232 22 34555542
Q ss_pred eeCCCCCC-CcHHHHHHHHHHHHHHHHHhCCCCCCCeee-ccCc-c-cHHHHHHcCCCeeeeCccccC
Q 025987 172 TIGMPDYT-STPENFRTLLNCRAEVCKALGMAEDQCELS-MGMS-G-DFEQAIEMGSTSVRIGSTIFG 235 (245)
Q Consensus 172 TH~a~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S-~g~s-~-~~~~~~~~~~d~VR~G~~lyG 235 (245)
.|.-++.. .....++.+. ++++. ++ +.++ .|.+ + +.......|.+.|=+|++++.
T Consensus 157 ~~g~t~~~~~~~~~~~~i~----~l~~~-~i----pvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~ 215 (232)
T 3igs_A 157 MSGYTTPDTPEEPDLPLVK----ALHDA-GC----RVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR 215 (232)
T ss_dssp TTTSSSSSCCSSCCHHHHH----HHHHT-TC----CEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CccCCCCCCCCCCCHHHHH----HHHhc-CC----cEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence 22111110 0011222232 34442 22 4454 4432 2 233345679999999999985
No 58
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=29.36 E-value=1.2e+02 Score=26.96 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=42.6
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeeeC
Q 025987 104 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG 174 (245)
Q Consensus 104 l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH~ 174 (245)
+..|+.+...++++-+++++.++ ++-|.+-++..+ - +.|.++ .+++..+. .++ +...|+=+++
T Consensus 157 l~ETi~~~~Eakaa~~a~~~~~l-Pv~iS~T~~~~G-~-l~G~~~---~~~~~~l~-~~~-~~avGvNC~~ 219 (406)
T 1lt8_A 157 IAEYFEHVEEAVWAVETLIASGK-PVAATMAIGPEG-D-LHGVPP---GEAAVRLV-KAG-ASIIGVNCHF 219 (406)
T ss_dssp EECCCSCHHHHHHHHHHHGGGTS-CEEEEECCBTTB-C-TTCCCH---HHHHHHHH-TTT-CSEEEEESSS
T ss_pred EEcccCCHHHHHHHHHHHHHhCC-cEEEEEEECCCC-C-cCCCcH---HHHHHHhh-cCC-CCEEEecCCC
Confidence 67789999999988888877776 766666665432 2 556654 44555555 443 6778886554
No 59
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=28.20 E-value=2.1e+02 Score=23.13 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=45.8
Q ss_pred cChHHHHHHHHcCCCeeeccc------------------------HHHHHHhhcCCCCCceeeee-ccCChHHHHHHHcc
Q 025987 44 KPVSLIRQVYDAGHRSFGENY------------------------VQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLLGG 98 (245)
Q Consensus 44 Hg~~~i~~~~~~G~~~~~va~------------------------~~Ea~~lr~~~~~~i~~~~l-G~~~~~~~~~~~~~ 98 (245)
.|+..++.+..+|+..+.+.. .+.+.+....+...+.+..+ ..+..+.+..++.
T Consensus 42 ~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~- 120 (249)
T 1jw9_B 42 LGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIA- 120 (249)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHh-
Confidence 455666778888987766533 33332222222222222222 3455556666663
Q ss_pred CCCccEEE-eeCCHHHHHHHHHHHHhcCC
Q 025987 99 VPNLDMVE-GVGNEKIANHLDKAVSNLGR 126 (245)
Q Consensus 99 ~~~~~l~~-~v~s~~~a~~l~~~a~~~~~ 126 (245)
.+|+++ +.++.+.-..+++.+.+.++
T Consensus 121 --~~DvVi~~~d~~~~~~~l~~~~~~~~~ 147 (249)
T 1jw9_B 121 --EHDLVLDCTDNVAVRNQLNAGCFAAKV 147 (249)
T ss_dssp --TSSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred --CCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 477544 56888777788888888775
No 60
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=26.35 E-value=1.2e+02 Score=25.45 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=35.5
Q ss_pred EEEEecccChHHHHHHHHcCCCeeeccc---------HHHHHHhhcCCCCCceeeee-ccCChHHHHHHH
Q 025987 37 VVAVSKTKPVSLIRQVYDAGHRSFGENY---------VQEIVDKAPQLPEDIKWHFV-GHLQSNKAKTLL 96 (245)
Q Consensus 37 l~aVvKaHg~~~i~~~~~~G~~~~~va~---------~~Ea~~lr~~~~~~i~~~~l-G~~~~~~~~~~~ 96 (245)
+-+++-.|..+++..++++|++.+|++. ++...++++.++.++.+... |...++++..+.
T Consensus 170 l~~lvevh~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~ 239 (272)
T 3tsm_A 170 MDALIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLE 239 (272)
T ss_dssp CEEEEEECSHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHH
Confidence 4455666887777666778888888873 44455555554443322233 333566666665
No 61
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=26.30 E-value=48 Score=21.29 Aligned_cols=28 Identities=7% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCcccCChhhHHHHHHHHHhcCCCeeEeE
Q 025987 141 ESKSGIDPSSCLGIVEHVRLRCPNLEFSG 169 (245)
Q Consensus 141 m~R~G~~~~e~~~~~~~i~~~~~~l~l~G 169 (245)
-.+.||+.+++..+++.+. +-.-|++++
T Consensus 32 a~kygV~kdeV~~~LrrLe-~KGLI~le~ 59 (59)
T 2xvc_A 32 SKVYGVEKQEVVKLLEALK-NKGLIAVES 59 (59)
T ss_dssp HHHHCCCHHHHHHHHHHHH-HTTSEEEEC
T ss_pred HHHhCCCHHHHHHHHHHHH-HCCCeeccC
Confidence 3789999999999999997 555566654
No 62
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=25.82 E-value=2.8e+02 Score=22.81 Aligned_cols=116 Identities=11% Similarity=-0.043 Sum_probs=64.9
Q ss_pred ccEEEee-CCHHHHHHHHHHHHhcCCCCceEEEEEe--------CCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeee
Q 025987 102 LDMVEGV-GNEKIANHLDKAVSNLGRKPLKVLVQVN--------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 172 (245)
Q Consensus 102 ~~l~~~v-~s~~~a~~l~~~a~~~~~~~~~V~lkid--------tG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~T 172 (245)
+.++++| .....+..+.+.|.+.|+ .+=+|+-.. .|.+--..|.+++++...++....+.|+ ..|+.-
T Consensus 28 ~pvT~Ai~P~~p~~~~~a~~A~~~G~-EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~--a~GvnN 104 (245)
T 2nly_A 28 IPVTVAVMPFLEHSTKQAEIAQAAGL-EVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPY--AVGLNN 104 (245)
T ss_dssp SCEEEEECSSSTTHHHHHHHHHHTTC-EEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTT--CCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHCCC-EEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCC--cEEEec
Confidence 5566665 234455677777888887 655555442 2222223466777777666644328897 579999
Q ss_pred eCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCee-e--ccCcccHHHHHHcCCCeee
Q 025987 173 IGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCEL-S--MGMSGDFEQAIEMGSTSVR 228 (245)
Q Consensus 173 H~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~-S--~g~s~~~~~~~~~~~d~VR 228 (245)
|.+.--..+.. .+..+.+.|++ +|+- .+ | ++.|.....+.+.+.-.++
T Consensus 105 HmGS~~T~~~~---~m~~vm~~l~~-~gL~----fvDS~Ts~~S~a~~~A~~~gvp~~~ 155 (245)
T 2nly_A 105 HMGSKIVENEK---IMRAILEVVKE-KNAF----IIDSGTSPHSLIPQLAEELEVPYAT 155 (245)
T ss_dssp EECTTGGGCHH---HHHHHHHHHHH-TTCE----EEECCCCSSCSHHHHHHHTTCCEEE
T ss_pred ccccchhcCHH---HHHHHHHHHHH-CCCE----EEcCCCCcccHHHHHHHHcCCCeEE
Confidence 99863222233 34444556776 4753 23 2 3334444555555555444
No 63
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=25.12 E-value=2.8e+02 Score=22.65 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=90.3
Q ss_pred CcEEEEEecc----cCh------HH-HHHHHHcCCCeeec--------ccHHHHHHhhcCCCCCceeeeec-cCChHHHH
Q 025987 34 QIRVVAVSKT----KPV------SL-IRQVYDAGHRSFGE--------NYVQEIVDKAPQLPEDIKWHFVG-HLQSNKAK 93 (245)
Q Consensus 34 ~~~l~aVvKa----Hg~------~~-i~~~~~~G~~~~~v--------a~~~Ea~~lr~~~~~~i~~~~lG-~~~~~~~~ 93 (245)
+..++|=+|. .|. .. ++...+.|++++-| .+.+.....|+....|+ +.=+ .+++.++.
T Consensus 45 ~~~~IaE~k~aSPskg~i~~~~p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v~lPv--l~kdfI~d~~qi~ 122 (254)
T 1vc4_A 45 GLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPL--LRKDFVVDPFMLE 122 (254)
T ss_dssp SCEEEEEECSCCTTTCCCCSCCHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCE--EEESCCCSHHHHH
T ss_pred CCcEEeeecCCCcCCCcCCCCCHHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhcCCCE--EECCcCCCHHHHH
Confidence 4679999985 342 33 46677899999998 46666666776655564 2222 24555666
Q ss_pred HHHccCCCccEEEeeCC-H-HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEee
Q 025987 94 TLLGGVPNLDMVEGVGN-E-KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 171 (245)
Q Consensus 94 ~~~~~~~~~~l~~~v~s-~-~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~ 171 (245)
.+... ..+.++-..+ + +.++.+-+.+.+.|. .+.+.+.+ ++|+.... .+. -.+.|+-
T Consensus 123 ~a~~~--GAD~VlL~~~~l~~~l~~l~~~a~~lGl---~~lvev~~----------~~E~~~a~-~~g-----ad~IGvn 181 (254)
T 1vc4_A 123 EARAF--GASAALLIVALLGELTGAYLEEARRLGL---EALVEVHT----------ERELEIAL-EAG-----AEVLGIN 181 (254)
T ss_dssp HHHHT--TCSEEEEEHHHHGGGHHHHHHHHHHHTC---EEEEEECS----------HHHHHHHH-HHT-----CSEEEEE
T ss_pred HHHHc--CCCEEEECccchHHHHHHHHHHHHHCCC---eEEEEECC----------HHHHHHHH-HcC-----CCEEEEc
Confidence 65431 2454443221 1 566666666666664 44433332 24443221 121 2566765
Q ss_pred eeCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeee-ccCc-c-cHHHHHHcCCCeeeeCccccCC
Q 025987 172 TIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELS-MGMS-G-DFEQAIEMGSTSVRIGSTIFGP 236 (245)
Q Consensus 172 TH~a~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~S-~g~s-~-~~~~~~~~~~d~VR~G~~lyG~ 236 (245)
.-+..+...+.+. +.++...+.. .+.+ ...++ +|.+ . +...... |.+.|=+|.+||..
T Consensus 182 ~~~l~~~~~dl~~---~~~L~~~i~~-~~~~--~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~ 242 (254)
T 1vc4_A 182 NRDLATLHINLET---APRLGRLARK-RGFG--GVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRA 242 (254)
T ss_dssp SBCTTTCCBCTTH---HHHHHHHHHH-TTCC--SEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTS
T ss_pred cccCcCCCCCHHH---HHHHHHhCcc-ccCC--CeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCC
Confidence 4443332222222 3333333332 1211 23444 4533 2 1222236 99999999999964
No 64
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=24.62 E-value=2e+02 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=18.1
Q ss_pred EecccChHHHHHHHHcCCCeeeccc
Q 025987 40 VSKTKPVSLIRQVYDAGHRSFGENY 64 (245)
Q Consensus 40 VvKaHg~~~i~~~~~~G~~~~~va~ 64 (245)
++-.|..+++..+.++|++.+|++.
T Consensus 166 lvev~t~ee~~~A~~~Gad~IGv~~ 190 (272)
T 3qja_A 166 LVEVHTEQEADRALKAGAKVIGVNA 190 (272)
T ss_dssp EEEESSHHHHHHHHHHTCSEEEEES
T ss_pred EEEcCCHHHHHHHHHCCCCEEEECC
Confidence 3445777777666678999998873
No 65
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=24.26 E-value=3.3e+02 Score=23.27 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=60.0
Q ss_pred CCcEEEEEecccChHHHHHHHHcCCCeeeccc-HHHHHHhhcCCCCCceeeeeccCChHHHHHHHccCC--CccEEEeeC
Q 025987 33 EQIRVVAVSKTKPVSLIRQVYDAGHRSFGENY-VQEIVDKAPQLPEDIKWHFVGHLQSNKAKTLLGGVP--NLDMVEGVG 109 (245)
Q Consensus 33 ~~~~l~aVvKaHg~~~i~~~~~~G~~~~~va~-~~Ea~~lr~~~~~~i~~~~lG~~~~~~~~~~~~~~~--~~~l~~~v~ 109 (245)
+++++.+.+.+.. .+..+.++|++.+.+.. .+|.-. +..+...+.+. -+.+..+++.++ ...+..++.
T Consensus 88 ~~~~i~~l~~~~~--~i~~a~~~g~~~v~i~~~~s~~~~-~~~~~~s~~e~------l~~~~~~v~~ak~~G~~v~~~~~ 158 (337)
T 3ble_A 88 ERIEILGFVDGNK--TVDWIKDSGAKVLNLLTKGSLHHL-EKQLGKTPKEF------FTDVSFVIEYAIKSGLKINVYLE 158 (337)
T ss_dssp GGEEEEEESSTTH--HHHHHHHHTCCEEEEEEECSHHHH-HHHTCCCHHHH------HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEccchh--hHHHHHHCCCCEEEEEEecCHHHH-HHHhCCCHHHH------HHHHHHHHHHHHHCCCEEEEEEE
Confidence 3567777776643 56667778888766543 222221 11122111000 011111211001 123444443
Q ss_pred C--------HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCcccCChhhHHHHHHHHHhcCCCeeEeEeeee
Q 025987 110 N--------EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 173 (245)
Q Consensus 110 s--------~~~a~~l~~~a~~~~~~~~~V~lkidtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~l~Gl~TH 173 (245)
+ ++.+..+.+.+.+.|. +..-=.||-+ ...|.++.++++.+++..|.+.+ |+-+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~Ga---~~i~l~DT~G-----~~~P~~v~~lv~~l~~~~p~~~i-~~H~H 221 (337)
T 3ble_A 159 DWSNGFRNSPDYVKSLVEHLSKEHI---ERIFLPDTLG-----VLSPEETFQGVDSLIQKYPDIHF-EFHGH 221 (337)
T ss_dssp THHHHHHHCHHHHHHHHHHHHTSCC---SEEEEECTTC-----CCCHHHHHHHHHHHHHHCTTSCE-EEECB
T ss_pred ECCCCCcCCHHHHHHHHHHHHHcCC---CEEEEecCCC-----CcCHHHHHHHHHHHHHhcCCCeE-EEEec
Confidence 3 5666666666666664 2222346642 13578888899888745666554 44444
No 66
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=24.13 E-value=1.9e+02 Score=25.04 Aligned_cols=111 Identities=11% Similarity=0.023 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHhCCCCCCcEEEEEecc--cChHHHHHHHHcCCCeeec-------------------
Q 025987 7 EGAAVTALRSVLHRVRQ---AAERSGRTQEQIRVVAVSKT--KPVSLIRQVYDAGHRSFGE------------------- 62 (245)
Q Consensus 7 ~~~l~~Nl~~i~~~i~~---~~~~~~~~~~~~~l~aVvKa--Hg~~~i~~~~~~G~~~~~v------------------- 62 (245)
+.++.-|++.||.++-. ..+. .+.++ .|+=+ .|+..++.+..+|+..|.+
T Consensus 9 ~~~~~lnl~lm~wRll~~~g~~kL-----~~~~V-lIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~ 82 (340)
T 3rui_A 9 DQSVDLNLKLMKWRILPDLNLDII-----KNTKV-LLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 82 (340)
T ss_dssp HHHHHHHHHHHHHHTCTTCCHHHH-----HTCEE-EEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCG
T ss_pred HHHHHHHHHHHHHhhcchhhHHHH-----hCCEE-EEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCCh
Confidence 47788899999887621 0011 12233 23333 5566678888899988876
Q ss_pred -----ccHHHHHHhhcCCCCCceeeee-------ccC---------ChHHHHHHHccCCCccEEE-eeCCHHHHHHHHHH
Q 025987 63 -----NYVQEIVDKAPQLPEDIKWHFV-------GHL---------QSNKAKTLLGGVPNLDMVE-GVGNEKIANHLDKA 120 (245)
Q Consensus 63 -----a~~~Ea~~lr~~~~~~i~~~~l-------G~~---------~~~~~~~~~~~~~~~~l~~-~v~s~~~a~~l~~~ 120 (245)
.+.+.+.+.-..+...+.+... |+. ..+.+..+++ .+|+++ ..|+.+.-..+++.
T Consensus 83 ~diG~~Ka~aaa~~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~---~~DlVvd~tDn~~tR~lin~~ 159 (340)
T 3rui_A 83 EDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIK---EHDIIFLLVDSRESRWLPSLL 159 (340)
T ss_dssp GGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHH---HCSEEEECCSSTGGGHHHHHH
T ss_pred hhcChHHHHHHHHHHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhc---cCCEEEecCCCHHHHHHHHHH
Confidence 3444444322222222211111 211 1234455663 477665 67888766788999
Q ss_pred HHhcCC
Q 025987 121 VSNLGR 126 (245)
Q Consensus 121 a~~~~~ 126 (245)
+.+.++
T Consensus 160 c~~~~~ 165 (340)
T 3rui_A 160 SNIENK 165 (340)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 988876
No 67
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.84 E-value=7 Score=27.84 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=36.1
Q ss_pred CCcccCChhhHHHHHHHHHhcCC-C--eeEeEeeeeCCC-CCCCcHHHHHHHHHHHHHHHH
Q 025987 141 ESKSGIDPSSCLGIVEHVRLRCP-N--LEFSGLMTIGMP-DYTSTPENFRTLLNCRAEVCK 197 (245)
Q Consensus 141 m~R~G~~~~e~~~~~~~i~~~~~-~--l~l~Gl~TH~a~-~~~~~~~~~~~~~~~~~~l~~ 197 (245)
|++-=++|+|+..++..|. ++- . =++.+|-++|.. + ++.+++.++|.+.++.+.+
T Consensus 1 M~qa~~dpeElr~Fa~~L~-~F~d~Lq~~~~~L~~~f~~L~-sWqDqkr~kFee~fe~l~s 59 (94)
T 3fx7_A 1 MSRVQMDTEEVREFVGHLE-RFKELLREEVNSLSNHFHNLE-SWRDARRDKFSEVLDNLKS 59 (94)
T ss_dssp ----CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCC-SCCSHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccc-hHhhHHHHHHHHHHHHHHH
Confidence 5666678999988888876 432 1 235667777764 5 6677788888888777765
No 68
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=23.79 E-value=2.8e+02 Score=23.70 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc-cC-----hHH-HHHHHHcCCCeeeccc---------------H
Q 025987 8 GAAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT-KP-----VSL-IRQVYDAGHRSFGENY---------------V 65 (245)
Q Consensus 8 ~~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa-Hg-----~~~-i~~~~~~G~~~~~va~---------------~ 65 (245)
..+.+..+.+.+.++.+.+.+ ..+=.+++-+---. -| ... ++.+.++|++++-|+. +
T Consensus 188 GslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~ 266 (340)
T 3gr7_A 188 GSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQV 266 (340)
T ss_dssp SSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTH
T ss_pred CCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccH
Confidence 457778888888888888876 32333344332100 01 122 4667889999998862 2
Q ss_pred HHHHHhhcCCCCCceeeeeccC-ChHHHHHHHc
Q 025987 66 QEIVDKAPQLPEDIKWHFVGHL-QSNKAKTLLG 97 (245)
Q Consensus 66 ~Ea~~lr~~~~~~i~~~~lG~~-~~~~~~~~~~ 97 (245)
+-+..+++....|+ ...|.+ .++++.++++
T Consensus 267 ~~~~~ik~~~~iPV--i~~GgI~s~e~a~~~L~ 297 (340)
T 3gr7_A 267 PFAELIRREADIPT--GAVGLITSGWQAEEILQ 297 (340)
T ss_dssp HHHHHHHHHTTCCE--EEESSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcE--EeeCCCCCHHHHHHHHH
Confidence 23344455444454 344544 4666766664
No 69
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.25 E-value=2e+02 Score=20.32 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=36.2
Q ss_pred HHHHHHccCCCcc---EEEeeCCHHHHHHHHHHHHhcCCCCceEEEEE-eCCCCCCcccCChhhHHHHHHHHHhcCCCee
Q 025987 91 KAKTLLGGVPNLD---MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQV-NTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 166 (245)
Q Consensus 91 ~~~~~~~~~~~~~---l~~~v~s~~~a~~l~~~a~~~~~~~~~V~lki-dtG~~m~R~G~~~~e~~~~~~~i~~~~~~l~ 166 (245)
.+++++. +|+ +...||+.+|++..-+..+..|. +|++-| |-+ .+| +.++-..+. -.+++
T Consensus 41 sieelvk---kynativvvvvddkewaekairfvkslga---qvliiiydqd--qnr-------leefsrevr--rrgfe 103 (134)
T 2l69_A 41 SIEELVK---KYNATIVVVVVDDKEWAEKAIRFVKSLGA---QVLIIIYDQD--QNR-------LEEFSREVR--RRGFE 103 (134)
T ss_dssp HHHHHTT---CCCCEEEEEECSSHHHHHHHHHHHHHHCC---CCEEEEECSC--HHH-------HHHHHHHHH--HTTCC
T ss_pred HHHHHHH---HhCCeEEEEEEccHHHHHHHHHHHHhcCC---eEEEEEEeCc--hhH-------HHHHHHHHH--hcCce
Confidence 3455663 344 45667999999888788887775 444444 443 333 334445554 23555
Q ss_pred EeEe
Q 025987 167 FSGL 170 (245)
Q Consensus 167 l~Gl 170 (245)
+.-+
T Consensus 104 vrtv 107 (134)
T 2l69_A 104 VRTV 107 (134)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5544
No 70
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=22.13 E-value=1.5e+02 Score=25.97 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc---cC------hHH-HHHHHHcCCCeeeccc--H---------HH
Q 025987 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT---KP------VSL-IRQVYDAGHRSFGENY--V---------QE 67 (245)
Q Consensus 9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa---Hg------~~~-i~~~~~~G~~~~~va~--~---------~E 67 (245)
.+.++.+.+.+.++.+.+.++..+=.+++.+.... ++ ... ++.+.++|++++.|.. . +-
T Consensus 211 slenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~ 290 (377)
T 2r14_A 211 SIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGF 290 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTH
T ss_pred chhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHH
Confidence 46778888888888888887632212222221111 21 122 3667789999998854 1 11
Q ss_pred HHHhhcCCCCCceeeeeccCChHHHHHHHc
Q 025987 68 IVDKAPQLPEDIKWHFVGHLQSNKAKTLLG 97 (245)
Q Consensus 68 a~~lr~~~~~~i~~~~lG~~~~~~~~~~~~ 97 (245)
+..+|+....|+ ...|.+.++++.++++
T Consensus 291 ~~~ik~~~~iPv--i~~Ggi~~~~a~~~l~ 318 (377)
T 2r14_A 291 REQMRQRFKGGL--IYCGNYDAGRAQARLD 318 (377)
T ss_dssp HHHHHHHCCSEE--EEESSCCHHHHHHHHH
T ss_pred HHHHHHHCCCCE--EEECCCCHHHHHHHHH
Confidence 223344443343 3445556666666664
No 71
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=21.36 E-value=1.8e+02 Score=25.21 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEecc---cC---hHH----HHHHHHcCCCeeecccH----------HHH
Q 025987 9 AAVTALRSVLHRVRQAAERSGRTQEQIRVVAVSKT---KP---VSL----IRQVYDAGHRSFGENYV----------QEI 68 (245)
Q Consensus 9 ~l~~Nl~~i~~~i~~~~~~~~~~~~~~~l~aVvKa---Hg---~~~----i~~~~~~G~~~~~va~~----------~Ea 68 (245)
.+.++.+.+.+.++.+.+.++..+=.+++-+-... ++ .+. ++.+.+.|++++.+..- +-+
T Consensus 206 slenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~ 285 (365)
T 2gou_A 206 SLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFK 285 (365)
T ss_dssp SHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHH
T ss_pred chhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHH
Confidence 36677777778888887777632112222221111 11 112 35667899999988652 223
Q ss_pred HHhhcCCCCCceeeeeccCChHHHHHHHc
Q 025987 69 VDKAPQLPEDIKWHFVGHLQSNKAKTLLG 97 (245)
Q Consensus 69 ~~lr~~~~~~i~~~~lG~~~~~~~~~~~~ 97 (245)
..+|+....|+ ...|.+.++++.++++
T Consensus 286 ~~i~~~~~iPv--i~~Ggi~~~~a~~~l~ 312 (365)
T 2gou_A 286 RALREAYQGVL--IYAGRYNAEKAEQAIN 312 (365)
T ss_dssp HHHHHHCCSEE--EEESSCCHHHHHHHHH
T ss_pred HHHHHHCCCcE--EEeCCCCHHHHHHHHH
Confidence 34455444443 3445566677776664
No 72
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=20.88 E-value=66 Score=28.86 Aligned_cols=100 Identities=12% Similarity=0.206 Sum_probs=52.2
Q ss_pred cEEEEEecccCh----HHHHHHHHcCCCe--eecccHHHHHHhhc-------C-CCCCceeeeeccCChHHH----HHHH
Q 025987 35 IRVVAVSKTKPV----SLIRQVYDAGHRS--FGENYVQEIVDKAP-------Q-LPEDIKWHFVGHLQSNKA----KTLL 96 (245)
Q Consensus 35 ~~l~aVvKaHg~----~~i~~~~~~G~~~--~~va~~~Ea~~lr~-------~-~~~~i~~~~lG~~~~~~~----~~~~ 96 (245)
++=|.-+++... .+++.+.++|++. ++|.+.++|..+.+ . ...|+ .-=-+++...+ +.++
T Consensus 26 VQSMtnT~T~Dv~aTv~QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~vPL--VADiHF~~~~al~a~~~~a 103 (406)
T 4g9p_A 26 VQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPL--VGDFHFNGHLLLRKYPKMA 103 (406)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCCCCE--EEECCSSHHHHHHHCHHHH
T ss_pred eeecCCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCCCCce--EeeecccHHHHHHHHHHHH
Confidence 344444455443 3356677899885 89999998876532 1 33342 11122333222 1222
Q ss_pred ccCCCccEEEe-eC----CHHHHHHHHHHHHhcCCCCceEEEEEeCCC
Q 025987 97 GGVPNLDMVEG-VG----NEKIANHLDKAVSNLGRKPLKVLVQVNTSG 139 (245)
Q Consensus 97 ~~~~~~~l~~~-v~----s~~~a~~l~~~a~~~~~~~~~V~lkidtG~ 139 (245)
+.+..+++-+- +. +.+....+-+.|++.++ +++ |-||.|.
T Consensus 104 ~~~dkiRINPGNig~~~k~~e~~~~vv~~ak~~~~-pIR--IGVN~GS 148 (406)
T 4g9p_A 104 EALDKFRINPGTLGRGRHKDEHFAEMIRIAMDLGK-PVR--IGANWGS 148 (406)
T ss_dssp HHCSEEEECTTSSCSTHHHHHHHHHHHHHHHHHTC-CEE--EEEEGGG
T ss_pred hHHhhcccCccccCccccHHHHHHHHHHHHHHccC-Cce--ecccccc
Confidence 11112222221 22 23556677778888887 655 5789883
No 73
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=20.07 E-value=4.8e+02 Score=23.47 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=60.6
Q ss_pred CcEEEEEecc----cC-------hHHHHHHHHcCCCeeec--------ccHHHHHHhhcCCCCCc-eeeeeccCChHHHH
Q 025987 34 QIRVVAVSKT----KP-------VSLIRQVYDAGHRSFGE--------NYVQEIVDKAPQLPEDI-KWHFVGHLQSNKAK 93 (245)
Q Consensus 34 ~~~l~aVvKa----Hg-------~~~i~~~~~~G~~~~~v--------a~~~Ea~~lr~~~~~~i-~~~~lG~~~~~~~~ 93 (245)
+..++|=+|- .| ...+...++.|+.++.| .+++.....|+....|| .-.|+ +++-++.
T Consensus 47 ~~~vIaEvKraSPSkG~i~~~~~~~~iA~~y~~~A~~IsvLTd~~~F~gs~~dL~~vr~~v~lPvLrKDFI--~d~~Qi~ 124 (452)
T 1pii_A 47 RTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFI--IDPYQIY 124 (452)
T ss_dssp SCEEEEEECSEETTTEESCSSCCHHHHHHHHTTTCSEEEEECCSTTTCCCTTHHHHHHHHCCSCEEEESCC--CSHHHHH
T ss_pred CCceEEEecCCCCCCCccCCCCCHHHHHHHHHhhCcEEEEEecccccCCCHHHHHHHHHhcCCCeEEEecc--CCHHHHH
Confidence 4679999986 11 23344456666999999 88888888887765563 22222 4455555
Q ss_pred HHHccCCCccE---EEeeCCHHHHHHHHHHHHhcCCCCceEEEEEeC
Q 025987 94 TLLGGVPNLDM---VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT 137 (245)
Q Consensus 94 ~~~~~~~~~~l---~~~v~s~~~a~~l~~~a~~~~~~~~~V~lkidt 137 (245)
++.. -..|. +.++-+.+.++.|-+.+.+.|. .++++|.+
T Consensus 125 ea~~--~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm---~~LvEvh~ 166 (452)
T 1pii_A 125 LARY--YQADACLLMLSVLDDDQYRQLAAVAHSLEM---GVLTEVSN 166 (452)
T ss_dssp HHHH--TTCSEEEEETTTCCHHHHHHHHHHHHHTTC---EEEEEECS
T ss_pred HHHH--cCCCEEEEEcccCCHHHHHHHHHHHHHcCC---eEEEEeCC
Confidence 5432 12453 3344445677788888887764 67777775
Done!