BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025989
(245 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
Length = 230
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 94/139 (67%), Gaps = 7/139 (5%)
Query: 104 LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGF 163
+ PGCDY HWLIVM+ P T++QMID Y+ TLA V+GS EEAKK +Y S Y GF
Sbjct: 80 MLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 139
Query: 164 GCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQ 223
C + EETS K +GLPGVL+VLPDSY+D +NKDYG + +VNGEI+ P + +P+
Sbjct: 140 QCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEII---PCQYPTYQPKQS 196
Query: 224 RAQDRPRYNDRTRYVRRRE 242
R+ +Y + YVR+R+
Sbjct: 197 RSS---KYKSKA-YVRQRD 211
>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis
thaliana GN=At3g15000 PE=1 SV=1
Length = 395
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
Query: 92 NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKK 151
N+S+RPP E L GCD+EHWL+V++ P GE T+ ++ID YIKTLAQ+VGSE+EA+ K
Sbjct: 80 NWSNRPPKETI-LLDGCDFEHWLVVVEPPQGE-PTRDEIIDSYIKTLAQIVGSEDEARMK 137
Query: 152 IYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRS 211
IY+VS Y+ FG + E+ S+KL+ L V +VLPDSY+D NKDYG E F++G+ V
Sbjct: 138 IYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYD 197
Query: 212 PE 213
P+
Sbjct: 198 PK 199
>sp|Q4P6G5|SPB1_USTMA AdoMet-dependent rRNA methyltransferase SPB1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SPB1 PE=3 SV=1
Length = 921
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 185 LPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENT 244
LP ++D E K Y A + + E +Q ERQR ++ +P + + + R +RR E
Sbjct: 758 LPTWFLDDEQKHYKANIPITKEAIQALRERQRALDARPIKKVAEAKARKKMRTLRRLEKA 817
Query: 245 R 245
+
Sbjct: 818 Q 818
>sp|Q8IY81|SPB1_HUMAN pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1
SV=2
Length = 847
Score = 33.9 bits (76), Expect = 1.00, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 123 EGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVL 182
E K +++D L V+ S ++AK+ + + S RY T N+ EG
Sbjct: 655 EDPAKHRILDPEGLALGAVIASSKKAKRDLIDNSFNRY----------TFNEDEG----- 699
Query: 183 FVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRE 242
LP+ +V E + +L V + V+ +R R + +P + + + R ++R E
Sbjct: 700 -ELPEWFVQEEKQHRIRQLPVGKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLE 758
Query: 243 NTR 245
TR
Sbjct: 759 QTR 761
>sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2
SV=1
Length = 841
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 123 EGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVL 182
E K +++D L V+ S ++AK+ + + S RY T N+ EG
Sbjct: 649 EDPAKHRILDPEGLALGAVIASSKKAKRDLIDNSFNRY----------TFNEDEG----- 693
Query: 183 FVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRE 242
LP+ +V E + +L + + ++ +R R + +P + + + R ++R E
Sbjct: 694 -ELPEWFVQEEKQHRIRQLPIGKKEMEHYRKRWREINARPIKKVAEAKARKKRRMLKRLE 752
Query: 243 NTR 245
TR
Sbjct: 753 QTR 755
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus
GN=Arfgap3 PE=2 SV=2
Length = 523
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 142 VGSEEEAKKKIYNV---SCERYFGFGCELDEETSNKLEGL 178
+GS +EA+KK NV S + YFG + D ET +LE L
Sbjct: 418 IGSTDEAQKKFGNVKAISSDMYFGIQAQTDFETRARLERL 457
>sp|Q4KLN7|ARFG3_RAT ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus
norvegicus GN=Arfgap3 PE=2 SV=1
Length = 525
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 142 VGSEEEAKKKIYNV---SCERYFGFGCELDEETSNKLEGL 178
VG+ +EA+KK NV S + YFG + D ET +LE L
Sbjct: 420 VGNTDEAQKKFGNVKAISSDMYFGIQSQTDFETRARLERL 459
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,561,947
Number of Sequences: 539616
Number of extensions: 4291195
Number of successful extensions: 10493
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10477
Number of HSP's gapped (non-prelim): 25
length of query: 245
length of database: 191,569,459
effective HSP length: 114
effective length of query: 131
effective length of database: 130,053,235
effective search space: 17036973785
effective search space used: 17036973785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)