BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025990
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 91/168 (54%), Gaps = 13/168 (7%)
Query: 13 LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRY 70
L LP G+RF PTDEEL+V YL RK G +I E+D+++ P LP EK+ Y
Sbjct: 18 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 71 FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
FFS + N + AGSGYWK G ++ I G Q VGI+K L+F GK
Sbjct: 78 FFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKAPKG 133
Query: 131 TKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 178
TKT W+MH+Y L+ + T+ + DWV+ RI++++ +K
Sbjct: 134 TKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQSSAQK 174
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 91/168 (54%), Gaps = 13/168 (7%)
Query: 13 LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRY 70
L LP G+RF PTDEEL+V YL RK G +I E+D+++ P LP EK+ Y
Sbjct: 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 71 FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
FFS + N + AGSGYWK G ++ I G Q VGI+K L+F GK
Sbjct: 75 FFSP--RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKAPKG 130
Query: 131 TKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 178
TKT W+MH+Y L+ + T+ + DWV+ RI++++ +K
Sbjct: 131 TKTNWIMHEYRLIEPSRRNGSTK-------LDDWVLCRIYKKQSSAQK 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 13 LKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLP--GDMKEKKRY 70
L LP G+RF PTD+ELV HYL RK G LP II E+D+++ P LP ++ Y
Sbjct: 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 71 FFSNIRNESAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHE 130
FF+ + N + AAG+GYWK G ++ + G + +GI+K L+F GK
Sbjct: 73 FFTP--RDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKKALVFYAGKAPRG 128
Query: 131 TKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVYRIFQRKKKPKK 178
KT W+MH+Y L + + + DWV+ R++ +K + +K
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAK--KGSLRLDDWVLCRLYNKKNEWEK 174
>pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member
Of Enolase Superfamily From Enterococcus Faecalis V583
pdb|1WUE|B Chain B, Crystal Structure Of Protein Gi:29375081, Unknown Member
Of Enolase Superfamily From Enterococcus Faecalis V583
Length = 386
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 53 FQSHP-LGLPGDMKEKKRYFFSNIRNESAIDNDGKCKIAAGSG 94
F S P PGD+ +RYF+ +I E I G + G G
Sbjct: 324 FASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLG 366
>pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
pdb|2ZC8|B Chain B, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
Length = 369
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 26 EELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGL--------PGDMKEKKRYFFSNIRN 77
E L VH L G+PL + E V ++H L L PGD+ RY+ +I
Sbjct: 271 ESLRVHALAESA-GIPLWMGGMLEAGVGRAHNLHLATLPGFTKPGDVSSASRYWEEDIVE 329
Query: 78 ESAIDNDGKCKIAAGSG 94
E+ DG + G G
Sbjct: 330 EALEAKDGLMPVPEGVG 346
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 159 VIIGDWVVYRIFQRKKKPKKRGVVSSNNLNI-TKNSHK------NQLQVIDFSVIEADQ 210
++ D V Y+IF+ + K R V + N+ + KN+H N + +IDFSV++ D+
Sbjct: 1 ALVRDDVDYQIFRDFAENKGRFSVGATNVEVRDKNNHSLGNVLPNGIPMIDFSVVDVDK 59
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 34 KRKVFGLPLPASIIPELDVFQSH 56
K + F PLP ++IP +D FQ +
Sbjct: 179 KAEAFAHPLPFNVIPHIDAFQEN 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,574,937
Number of Sequences: 62578
Number of extensions: 314195
Number of successful extensions: 633
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 7
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)