Query 025990
Match_columns 245
No_of_seqs 170 out of 950
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 9E-59 3.1E-63 389.6 14.3 159 10-174 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 8.6E-59 2.9E-63 389.1 13.0 165 1-177 4-170 (171)
3 1ldd_A APC2WHB, anaphase promo 30.5 25 0.00087 24.6 2.0 27 15-42 36-63 (74)
4 1cmb_A Met APO-repressor; DNA- 30.3 68 0.0023 23.4 4.3 38 22-63 50-87 (104)
5 4dox_A Coat protein; all helix 24.8 35 0.0012 29.0 2.2 32 6-37 145-177 (226)
6 3cpr_A Dihydrodipicolinate syn 19.2 34 0.0012 29.8 1.0 21 12-33 115-135 (304)
7 3fkr_A L-2-keto-3-deoxyarabona 18.0 49 0.0017 28.9 1.8 32 11-43 106-139 (309)
8 1f6k_A N-acetylneuraminate lya 17.5 42 0.0014 28.9 1.2 21 12-33 103-123 (293)
9 2ehh_A DHDPS, dihydrodipicolin 17.3 43 0.0015 28.9 1.2 21 12-33 99-119 (294)
10 3dz1_A Dihydrodipicolinate syn 17.0 47 0.0016 29.0 1.4 21 11-33 105-125 (313)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=9e-59 Score=389.58 Aligned_cols=159 Identities=36% Similarity=0.734 Sum_probs=133.4
Q ss_pred CCccCCCCCceecCChHHHHHHHHHHHHcCCCCCCcceeccCCCCCCCCCCCCc--CCCCeEEEEeccccccccCCCCcc
Q 025990 10 NGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNESAIDNDGKC 87 (245)
Q Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp~~~I~~~Dvy~~~PwdLp~~--~~~~~wYFFs~~~k~~k~~~g~R~ 87 (245)
.+.+.|||||||+|||||||.|||++|+.|.++|..+|+++|||++|||+||+. .++.+|||||+ +.+||++|.|.
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~--r~~ky~~g~R~ 87 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTP--RDRKYPNGSRP 87 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEE--CCC-----CCS
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEec--cccccCCCCCc
Confidence 345899999999999999999999999999999999999999999999999987 45689999999 78899999999
Q ss_pred cccccceeeecCCCcceEEeCCCceEEEEEEEEEeecCcCCCCcccCeEEEEEEeCCcccCCCCCcccccceecccEEEE
Q 025990 88 KIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGDWVVY 167 (245)
Q Consensus 88 ~R~tg~G~Wk~~g~~k~I~~~~~g~~vG~kktl~Fy~g~~~~g~rT~W~MhEY~l~~~~~~~~~~~~~~~~~~~~~~VLC 167 (245)
+|+|++||||++|++++|. .+|.+||+||+|+||.|++|++.+|+|+||||+|.......... .......++||||
T Consensus 88 nR~t~~G~WkatG~dk~I~--~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~--~~~~~~~~~wVlC 163 (174)
T 3ulx_A 88 NRAAGNGYWKATGADKPVA--PRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGA--KKGSLRLDDWVLC 163 (174)
T ss_dssp CEEETTEEEEECSCCEEEC--CSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-------------CCSSEEEE
T ss_pred eeecCCceEccCCCCcEEe--eCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccccc--ccCCCCCCCEEEE
Confidence 9999999999999999998 45899999999999999999999999999999998875432100 0001256899999
Q ss_pred EEEEcCC
Q 025990 168 RIFQRKK 174 (245)
Q Consensus 168 rI~~k~r 174 (245)
|||+|+.
T Consensus 164 rvf~K~~ 170 (174)
T 3ulx_A 164 RLYNKKN 170 (174)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 9999874
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=8.6e-59 Score=389.15 Aligned_cols=165 Identities=39% Similarity=0.699 Sum_probs=132.0
Q ss_pred CccccccccCCccCCCCCceecCChHHHHHHHHHHHHcCCCCCCcceeccCCCCCCCCCCCCc--CCCCeEEEEeccccc
Q 025990 1 MEKQNNYVVNGGLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD--MKEKKRYFFSNIRNE 78 (245)
Q Consensus 1 m~~~~~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp~~~I~~~Dvy~~~PwdLp~~--~~~~~wYFFs~~~k~ 78 (245)
|+.. +.-...++.|||||||+|||||||.|||++|+.|.++|..+|+++|||.+|||+||+. .++.+|||||+ +.
T Consensus 4 m~~~-~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~--r~ 80 (171)
T 1ut7_A 4 MGIQ-ETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP--RD 80 (171)
T ss_dssp CCCC-----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEE--CC
T ss_pred cccc-cCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEec--cc
Confidence 5544 2223456899999999999999999999999999999999999999999999999986 45689999999 78
Q ss_pred cccCCCCcccccccceeeecCCCcceEEeCCCceEEEEEEEEEeecCcCCCCcccCeEEEEEEeCCcccCCCCCcccccc
Q 025990 79 SAIDNDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKM 158 (245)
Q Consensus 79 ~k~~~g~R~~R~tg~G~Wk~~g~~k~I~~~~~g~~vG~kktl~Fy~g~~~~g~rT~W~MhEY~l~~~~~~~~~~~~~~~~ 158 (245)
+||++|.|.+|+|++||||++|++++|. .++.+||+||+|+||.|++|++.+|+|+||||+|........ .
T Consensus 81 ~k~~~g~R~~R~t~~G~Wk~tG~~k~I~--~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~-------~ 151 (171)
T 1ut7_A 81 RKYPNGSRPNRVAGSGYWKATGTDKIIS--TEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNG-------S 151 (171)
T ss_dssp C-------CCEEETTEEEEEEEEEEEEE--ETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------
T ss_pred cccCCCCcccccCCCCEEeccCCCceEE--ecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccC-------c
Confidence 8999999999999999999999999998 456999999999999999999999999999999988652211 1
Q ss_pred eecccEEEEEEEEcCCCCC
Q 025990 159 VIIGDWVVYRIFQRKKKPK 177 (245)
Q Consensus 159 ~~~~~~VLCrI~~k~r~~~ 177 (245)
...++|||||||+|++..+
T Consensus 152 ~~~~~~VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 152 TKLDDWVLCRIYKKQSSAQ 170 (171)
T ss_dssp ---CCEEEEEEEECC----
T ss_pred ccCCCEEEEEEEEcCCCCC
Confidence 2578999999999987643
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=30.54 E-value=25 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=22.7
Q ss_pred CCCCceecC-ChHHHHHHHHHHHHcCCCC
Q 025990 15 LPIGYRFRP-TDEELVVHYLKRKVFGLPL 42 (245)
Q Consensus 15 LPpGfRF~P-TDeELV~~YL~~K~~g~pl 42 (245)
.|.|+.|.. |++||-. ||..++...-|
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 367999998 9999985 99999987765
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=30.29 E-value=68 Score=23.35 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCcceeccCCCCCCCCCCCCc
Q 025990 22 RPTDEELVVHYLKRKVFGLPLPASIIPELDVFQSHPLGLPGD 63 (245)
Q Consensus 22 ~PTDeELV~~YL~~K~~g~plp~~~I~~~Dvy~~~PwdLp~~ 63 (245)
|-|-.||++.-...-..|+|||.+ .|+-+..|-++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHH
Confidence 568889988777778899999985 58889999999865
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=24.81 E-value=35 Score=29.03 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=21.4
Q ss_pred ccccCCcc-CCCCCceecCChHHHHHHHHHHHH
Q 025990 6 NYVVNGGL-KLPIGYRFRPTDEELVVHYLKRKV 37 (245)
Q Consensus 6 ~~~~~~~~-~LPpGfRF~PTDeELV~~YL~~K~ 37 (245)
..|-|... .-+-|..+.||++|+|.|=..+++
T Consensus 145 D~V~n~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 145 DGVENPAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp GGTTCTTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred cccCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 55667653 334489999999999987554443
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=19.21 E-value=34 Score=29.82 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=16.2
Q ss_pred ccCCCCCceecCChHHHHHHHH
Q 025990 12 GLKLPIGYRFRPTDEELVVHYL 33 (245)
Q Consensus 12 ~~~LPpGfRF~PTDeELV~~YL 33 (245)
.+-+|| |.|.||+++|+.||-
T Consensus 115 vlv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 115 LLVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEEECC-CSSCCCHHHHHHHHH
T ss_pred EEECCC-CCCCCCHHHHHHHHH
Confidence 356677 558999999998773
No 7
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=18.04 E-value=49 Score=28.85 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=20.3
Q ss_pred CccCCCCCce--ecCChHHHHHHHHHHHHcCCCCC
Q 025990 11 GGLKLPIGYR--FRPTDEELVVHYLKRKVFGLPLP 43 (245)
Q Consensus 11 ~~~~LPpGfR--F~PTDeELV~~YL~~K~~g~plp 43 (245)
+.+-+||=|- |.||+++|+.|| +.-+...++|
T Consensus 106 avlv~~Pyy~~~~~~s~~~l~~~f-~~va~a~~lP 139 (309)
T 3fkr_A 106 MVMAMPPYHGATFRVPEAQIFEFY-ARVSDAIAIP 139 (309)
T ss_dssp EEEECCSCBTTTBCCCHHHHHHHH-HHHHHHCSSC
T ss_pred EEEEcCCCCccCCCCCHHHHHHHH-HHHHHhcCCC
Confidence 3466787332 899999999876 3333333444
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=17.45 E-value=42 Score=28.94 Aligned_cols=21 Identities=10% Similarity=-0.153 Sum_probs=15.8
Q ss_pred ccCCCCCceecCChHHHHHHHH
Q 025990 12 GLKLPIGYRFRPTDEELVVHYL 33 (245)
Q Consensus 12 ~~~LPpGfRF~PTDeELV~~YL 33 (245)
.+-+||- .|.||+++|+.||-
T Consensus 103 vlv~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 103 LSAVTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp EEEECCC-SSCCCHHHHHHHHH
T ss_pred EEECCCC-CCCCCHHHHHHHHH
Confidence 3556774 48999999998763
No 9
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=17.27 E-value=43 Score=28.91 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=15.8
Q ss_pred ccCCCCCceecCChHHHHHHHH
Q 025990 12 GLKLPIGYRFRPTDEELVVHYL 33 (245)
Q Consensus 12 ~~~LPpGfRF~PTDeELV~~YL 33 (245)
.+-+|| |.|.||+++|+.||-
T Consensus 99 vlv~~P-~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 99 ALVVVP-YYNKPTQRGLYEHFK 119 (294)
T ss_dssp EEEECC-CSSCCCHHHHHHHHH
T ss_pred EEECCC-CCCCCCHHHHHHHHH
Confidence 355666 458899999998773
No 10
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=17.04 E-value=47 Score=29.03 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=15.4
Q ss_pred CccCCCCCceecCChHHHHHHHH
Q 025990 11 GGLKLPIGYRFRPTDEELVVHYL 33 (245)
Q Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL 33 (245)
+.+-+||- |.||+++|+.||-
T Consensus 105 avlv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 105 GVMIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EEEECCCT--TCCSHHHHHHHHH
T ss_pred EEEECCCC--CCCCHHHHHHHHH
Confidence 34567774 5699999998763
Done!