Query 025992
Match_columns 245
No_of_seqs 117 out of 443
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 1.1E-93 2.5E-98 600.0 16.3 235 4-241 3-237 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 3.4E-91 7.4E-96 613.7 24.9 237 6-244 1-238 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 4.5E-87 9.7E-92 587.2 23.7 236 6-244 1-236 (236)
4 KOG0841 Multifunctional chaper 100.0 5.3E-82 1.1E-86 543.9 20.6 237 5-244 1-238 (247)
5 PF13424 TPR_12: Tetratricopep 96.4 0.0078 1.7E-07 42.8 5.1 55 150-206 21-75 (78)
6 KOG1840 Kinesin light chain [C 93.3 8.9 0.00019 37.8 19.4 189 7-210 200-400 (508)
7 TIGR00990 3a0801s09 mitochondr 93.0 4 8.7E-05 40.4 15.2 54 150-205 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 91.1 1.5 3.1E-05 32.8 7.5 59 151-210 15-74 (94)
9 TIGR00990 3a0801s09 mitochondr 86.2 37 0.0008 33.6 16.3 74 150-232 524-597 (615)
10 PF13414 TPR_11: TPR repeat; P 84.9 4.7 0.0001 27.3 6.3 47 150-205 19-66 (69)
11 PF04781 DUF627: Protein of un 84.9 2 4.4E-05 33.7 4.8 41 124-164 33-74 (111)
12 PF13374 TPR_10: Tetratricopep 80.9 1.6 3.5E-05 26.4 2.4 23 151-173 19-41 (42)
13 KOG1840 Kinesin light chain [C 79.7 67 0.0014 31.7 18.5 186 9-217 286-490 (508)
14 PF12569 NARP1: NMDA receptor- 74.1 95 0.0021 30.7 17.6 61 144-205 156-222 (517)
15 PF13431 TPR_17: Tetratricopep 71.7 3.9 8.5E-05 24.7 2.2 34 156-198 1-34 (34)
16 PF13424 TPR_12: Tetratricopep 70.2 27 0.00058 24.1 6.7 37 172-210 1-37 (78)
17 PF07719 TPR_2: Tetratricopept 68.3 13 0.00027 21.3 4.0 26 9-34 4-29 (34)
18 KOG4162 Predicted calmodulin-b 67.8 1.6E+02 0.0034 30.6 14.9 96 96-206 411-507 (799)
19 PRK09782 bacteriophage N4 rece 67.4 1.8E+02 0.0039 31.2 15.0 26 9-34 512-537 (987)
20 TIGR02917 PEP_TPR_lipo putativ 65.2 1.5E+02 0.0032 29.3 15.2 27 8-34 705-731 (899)
21 PF13174 TPR_6: Tetratricopept 63.9 15 0.00033 20.8 3.7 27 8-34 2-28 (33)
22 TIGR02521 type_IV_pilW type IV 61.5 82 0.0018 25.1 16.7 166 7-206 32-198 (234)
23 PF13371 TPR_9: Tetratricopept 60.6 39 0.00084 22.8 5.9 45 151-204 12-56 (73)
24 PF13428 TPR_14: Tetratricopep 59.6 22 0.00047 22.3 4.1 27 8-34 3-29 (44)
25 CHL00033 ycf3 photosystem I as 58.8 91 0.002 25.0 8.8 70 150-228 88-163 (168)
26 PF13181 TPR_8: Tetratricopept 57.7 29 0.00064 19.8 4.2 27 8-34 3-29 (34)
27 PF14559 TPR_19: Tetratricopep 57.4 32 0.00069 22.9 5.0 44 151-203 8-51 (68)
28 PF01765 RRF: Ribosome recycli 57.0 43 0.00094 27.7 6.5 72 40-112 85-156 (165)
29 PRK15363 pathogenicity island 55.3 83 0.0018 26.2 7.8 71 148-231 83-155 (157)
30 PF13176 TPR_7: Tetratricopept 53.7 27 0.00058 21.0 3.6 26 9-34 2-27 (36)
31 PF00515 TPR_1: Tetratricopept 53.3 29 0.00063 20.0 3.7 26 9-34 4-29 (34)
32 CHL00033 ycf3 photosystem I as 52.7 54 0.0012 26.3 6.4 50 150-205 51-100 (168)
33 PF06552 TOM20_plant: Plant sp 51.9 64 0.0014 27.6 6.8 81 135-225 36-122 (186)
34 KOG4759 Ribosome recycling fac 51.3 70 0.0015 28.9 7.2 71 40-113 183-253 (263)
35 PRK12794 flaF flagellar biosyn 49.9 23 0.0005 28.2 3.6 53 186-238 8-60 (122)
36 COG0233 Frr Ribosome recycling 48.4 69 0.0015 27.5 6.4 74 39-113 104-177 (187)
37 COG3947 Response regulator con 47.8 31 0.00066 32.0 4.5 49 183-237 286-334 (361)
38 TIGR02795 tol_pal_ybgF tol-pal 46.9 87 0.0019 22.6 6.3 50 151-206 56-105 (119)
39 PRK14720 transcript cleavage f 45.3 62 0.0013 34.3 6.8 78 121-208 100-180 (906)
40 PF12895 Apc3: Anaphase-promot 44.5 40 0.00087 23.8 4.0 44 156-202 40-83 (84)
41 PRK02603 photosystem I assembl 44.5 93 0.002 25.1 6.6 49 151-205 52-100 (172)
42 TIGR02917 PEP_TPR_lipo putativ 43.3 3.4E+02 0.0073 26.8 17.4 27 8-34 603-629 (899)
43 PF12688 TPR_5: Tetratrico pep 43.1 1.2E+02 0.0027 23.7 6.8 51 150-206 17-67 (120)
44 PF03635 Vps35: Vacuolar prote 42.2 2.8E+02 0.006 28.9 10.9 40 150-189 701-741 (762)
45 PRK12793 flaF flagellar biosyn 42.2 31 0.00068 27.2 3.2 52 186-238 6-58 (115)
46 PF03755 YicC_N: YicC-like fam 42.0 54 0.0012 26.9 4.8 61 153-213 83-147 (159)
47 TIGR00496 frr ribosome recycli 40.6 1.7E+02 0.0038 24.6 7.8 74 39-113 93-166 (176)
48 cd00520 RRF Ribosome recycling 37.5 1E+02 0.0023 25.9 6.0 74 39-113 98-171 (179)
49 cd05804 StaR_like StaR_like; a 37.4 3E+02 0.0064 24.4 12.4 27 176-203 186-212 (355)
50 PF10083 DUF2321: Uncharacteri 37.3 2.2E+02 0.0047 23.8 7.5 34 24-60 83-116 (158)
51 PRK00083 frr ribosome recyclin 36.8 1.2E+02 0.0027 25.7 6.3 74 39-113 102-175 (185)
52 COG4499 Predicted membrane pro 34.6 81 0.0018 30.2 5.2 48 175-222 230-282 (434)
53 PLN03088 SGT1, suppressor of 34.0 1.1E+02 0.0023 28.4 6.0 46 151-205 19-64 (356)
54 smart00028 TPR Tetratricopepti 32.7 74 0.0016 16.1 3.9 26 9-34 4-29 (34)
55 PF13414 TPR_11: TPR repeat; P 32.5 1.5E+02 0.0032 19.6 7.3 46 7-56 4-49 (69)
56 PF14559 TPR_19: Tetratricopep 32.4 68 0.0015 21.2 3.4 53 18-75 3-55 (68)
57 TIGR03504 FimV_Cterm FimV C-te 32.3 97 0.0021 20.0 3.9 40 10-51 3-42 (44)
58 KOG1107 Membrane coat complex 31.7 1.1E+02 0.0024 31.3 5.9 54 150-204 656-710 (760)
59 PF13432 TPR_16: Tetratricopep 31.5 1.5E+02 0.0033 19.3 7.1 54 11-69 2-55 (65)
60 PF08631 SPO22: Meiosis protei 30.4 2.6E+02 0.0055 24.8 7.6 89 150-239 9-100 (278)
61 PRK10370 formate-dependent nit 30.3 1.4E+02 0.003 25.1 5.7 46 151-204 90-137 (198)
62 PRK15331 chaperone protein Sic 29.8 2.6E+02 0.0056 23.5 7.0 72 149-235 86-157 (165)
63 PF12895 Apc3: Anaphase-promot 29.4 97 0.0021 21.7 3.9 22 10-31 62-83 (84)
64 KOG2002 TPR-containing nuclear 29.1 1.2E+02 0.0026 32.3 5.8 52 155-210 250-303 (1018)
65 KOG1126 DNA-binding cell divis 28.6 79 0.0017 32.0 4.3 67 129-204 484-550 (638)
66 KOG0553 TPR repeat-containing 28.3 1.6E+02 0.0034 27.2 5.8 44 151-203 98-141 (304)
67 PRK02603 photosystem I assembl 27.8 3.2E+02 0.0069 21.9 8.2 70 151-229 89-164 (172)
68 PF13371 TPR_9: Tetratricopept 27.0 1.3E+02 0.0027 20.1 4.1 57 13-74 2-58 (73)
69 PF11568 Med29: Mediator compl 26.6 1.9E+02 0.0041 23.9 5.5 50 53-106 9-69 (148)
70 PF08717 nsp8: nsp8 replicase; 25.9 56 0.0012 28.1 2.3 39 149-207 14-52 (199)
71 PF07309 FlaF: Flagellar prote 25.7 77 0.0017 24.7 3.0 47 191-238 11-57 (113)
72 PRK15326 type III secretion sy 25.6 1.1E+02 0.0024 22.6 3.6 36 150-187 20-59 (80)
73 KOG0570 Transcriptional coacti 25.1 3.6E+02 0.0078 23.5 7.1 26 45-70 109-139 (223)
74 PF08424 NRDE-2: NRDE-2, neces 25.0 4.4E+02 0.0096 23.9 8.4 59 150-209 118-186 (321)
75 PF14490 HHH_4: Helix-hairpin- 24.9 1E+02 0.0022 22.9 3.4 49 127-187 38-87 (94)
76 KOG0687 26S proteasome regulat 24.7 3.6E+02 0.0077 25.6 7.5 77 130-209 53-136 (393)
77 PF10516 SHNi-TPR: SHNi-TPR; 24.5 71 0.0015 20.0 2.1 37 132-171 2-38 (38)
78 cd09235 V_Alix Middle V-domain 22.9 6E+02 0.013 23.4 9.9 136 83-238 199-337 (339)
79 PF02259 FAT: FAT domain; Int 22.9 5.3E+02 0.011 22.7 12.8 28 7-34 147-174 (352)
80 PRK11788 tetratricopeptide rep 22.9 5.5E+02 0.012 23.0 16.7 16 190-205 295-310 (389)
81 COG3063 PilF Tfp pilus assembl 22.7 1.3E+02 0.0027 27.0 4.0 47 150-205 85-131 (250)
82 cd05804 StaR_like StaR_like; a 22.4 5.4E+02 0.012 22.7 12.7 30 5-34 42-71 (355)
83 PF09986 DUF2225: Uncharacteri 21.7 5.2E+02 0.011 22.2 8.3 60 149-210 92-154 (214)
84 PRK11820 hypothetical protein; 21.0 1.9E+02 0.0041 26.4 5.0 60 154-214 85-145 (288)
85 PF12083 DUF3560: Domain of un 20.9 1.3E+02 0.0027 24.2 3.4 29 148-177 20-48 (126)
86 PRK11447 cellulose synthase su 20.8 1.1E+03 0.023 25.5 17.7 27 8-34 114-140 (1157)
87 PF14689 SPOB_a: Sensor_kinase 20.5 2E+02 0.0043 19.7 3.9 21 14-34 31-51 (62)
88 PRK11447 cellulose synthase su 20.5 1.1E+03 0.024 25.5 15.4 56 11-71 356-411 (1157)
89 PHA02103 hypothetical protein 20.2 29 0.00064 27.2 -0.4 15 130-144 78-92 (135)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-93 Score=600.02 Aligned_cols=235 Identities=71% Similarity=1.100 Sum_probs=230.0
Q ss_pred CcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhh
Q 025992 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEH 83 (245)
Q Consensus 4 ~~re~~~~~Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~ 83 (245)
..||+.+|+|+|++||+||++|++-||.++. .+ .+|+.+|||||||||||+||.||+|||++++++||++++|+..+
T Consensus 3 ~~rE~svylAkLaeqAERYe~MvenMk~vas--~~-~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~q 79 (268)
T COG5040 3 TSREDSVYLAKLAEQAERYEEMVENMKLVAS--SG-QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQ 79 (268)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc-chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhH
Confidence 3599999999999999999999999999997 55 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHH
Q 025992 84 VSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (245)
Q Consensus 84 ~~~i~~yr~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (245)
+.+|+.||++|++||..||++|+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++
T Consensus 80 v~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~Asei 159 (268)
T COG5040 80 VELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEI 159 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhccCC
Q 025992 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQ 241 (245)
Q Consensus 164 a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~e~~ 241 (245)
|...||||||+|||||||||||||||+++|++||.+||+|||+||++||+|+||+|+|+|+||||||||||+||++.+
T Consensus 160 A~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 160 ATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred hhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=3.4e-91 Score=613.75 Aligned_cols=237 Identities=78% Similarity=1.165 Sum_probs=228.3
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhccC-CCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhH
Q 025992 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSST-PATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (245)
Q Consensus 6 re~~~~~Aklaeq~ery~Dm~~~mk~i~~~~~-~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~ 84 (245)
|++++|+|||++|||||+||+.+||++++ . ++.+||.||||||||||||+||++|+|||+|++++++++.+|++.++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~--~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~ 78 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAK--TVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 78 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHH
Confidence 68999999999999999999999999998 5 32599999999999999999999999999999999998878887888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHH
Q 025992 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIA 164 (245)
Q Consensus 85 ~~i~~yr~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 164 (245)
+.++.||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|
T Consensus 79 ~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a 158 (244)
T smart00101 79 ASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIA 158 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhccCCccC
Q 025992 165 LTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQIDE 244 (245)
Q Consensus 165 ~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~e~~~~~ 244 (245)
+++||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+++|||||||||++|+++.++++
T Consensus 159 ~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~ 238 (244)
T smart00101 159 LAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDG 238 (244)
T ss_pred HccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999866543
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=4.5e-87 Score=587.18 Aligned_cols=236 Identities=68% Similarity=1.065 Sum_probs=223.1
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHH
Q 025992 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (245)
Q Consensus 6 re~~~~~Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~~ 85 (245)
|++++|||||++|||||+||+++||++++ ++ ++||.|||||||+||||+||++|+|||+|++++++++.+|++.+++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~--~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIE--MN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--TS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHc--cC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 89999999999999999999999999999 75 9999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 025992 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (245)
Q Consensus 86 ~i~~yr~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (245)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhccCCccC
Q 025992 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQIDE 244 (245)
Q Consensus 166 ~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~e~~~~~ 244 (245)
.+||||||+||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+++|||||||||++|+++.+++|
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~~ 236 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEEE 236 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999988775
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-82 Score=543.85 Aligned_cols=237 Identities=74% Similarity=1.109 Sum_probs=231.1
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhH
Q 025992 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (245)
Q Consensus 5 ~re~~~~~Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~ 84 (245)
+|+++|++|++++|+|||+||+.+||.+++ .+ .+||.+|||||||+|||+||++|++||+|++|+||++++|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~--~~-~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAE--LD-VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcc--cc-hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 489999999999999999999999999998 76 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-CchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHH
Q 025992 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATA-GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDI 163 (245)
Q Consensus 85 ~~i~~yr~ki~~EL~~~c~eii~lid~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (245)
..+..||++|+.||..+|++++.++|.+|+|+++. .+++|||+|||||||||++||..|++|+++++.++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78899999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhccCCcc
Q 025992 164 ALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQID 243 (245)
Q Consensus 164 a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~e~~~~ 243 (245)
++..|+||||+||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++.+.+
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~ 237 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD 237 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 025992 244 E 244 (245)
Q Consensus 244 ~ 244 (245)
+
T Consensus 238 ~ 238 (247)
T KOG0841|consen 238 E 238 (247)
T ss_pred c
Confidence 3
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.39 E-value=0.0078 Score=42.79 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (245)
-++|...|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 36699999999999 567899888877788888888776 79999999999998864
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.34 E-value=8.9 Score=37.76 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=123.1
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhc--cC-CCCCCcH-HHHHHHHHHHhhhhhhhhHHHHHHHH-Hhhhhhcccc-
Q 025992 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTS--ST-PATELTV-EERNLLSVAYKNVIGSLRAAWRIISS-IEQKEEGRKN- 80 (245)
Q Consensus 7 e~~~~~Aklaeq~ery~Dm~~~mk~i~~~--~~-~~~~L~~-eERnLls~ayKn~i~~~R~s~R~l~~-ie~k~~~~~~- 80 (245)
..+.++|.+..+.|+|+.++...++.+++ .. +...+-. .-.+-|++.|-+. +..+.|..+... +...+...|.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34557888899999999999999998864 11 1112222 2334466666543 445666666642 3334444443
Q ss_pred -hhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccccchhhcccchhHHHHHHHHH
Q 025992 81 -EEHVSLVKD-----YRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTM 154 (245)
Q Consensus 81 -~~~~~~i~~-----yr~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 154 (245)
+.....+.+ |+.-=-.|-...|..+++|..+.+. ...++-..-+ .++..-.....-.+.|.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~--~~~~~v~~~l-----------~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG--ASHPEVAAQL-----------SELAAILQSMNEYEEAK 345 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc--cChHHHHHHH-----------HHHHHHHHHhcchhHHH
Confidence 322222222 2222336788999999999988333 3333322211 22222222223357789
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 025992 155 LSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (245)
Q Consensus 155 ~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ 210 (245)
..|+.|+++....+++-||.-=|.--|+++-|+- +|..++|.++.++|+...-+-
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhc
Confidence 9999999999888999999999999999999886 799999999999998877654
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.01 E-value=4 Score=40.39 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (245)
.+.|...|++|+++.. ..++.++..++ .++.+..+|+-.|+.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3567778888876543 23333332222 345555566666777787777766643
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.14 E-value=1.5 Score=32.79 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHh-hhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLA-LNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~-LN~SVF~yei~~~~~~A~~iak~afd~a~~~ 210 (245)
..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 45778888888888777776655555554 788887776 699999999999999888764
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=86.23 E-value=37 Score=33.60 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLL 229 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlL 229 (245)
.+.|.+.|++|+. +.|.++. ..++.+-.++ -.|+.++|+....+|.+-+-+.-+-+.--++.+++.+-..+
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~-~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~ 594 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLL-QQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQV 594 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHH-HccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777765 3566553 2233344444 48999999998888876654422222223566666664444
Q ss_pred Hhh
Q 025992 230 RDN 232 (245)
Q Consensus 230 rdN 232 (245)
+.+
T Consensus 595 ~~~ 597 (615)
T TIGR00990 595 QED 597 (615)
T ss_pred HHH
Confidence 443
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.92 E-value=4.7 Score=27.33 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhC-CHHHHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILN-SSEKACTMAKQAFE 205 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~-~~~~A~~iak~afd 205 (245)
-+.|...|++|+++ +|-.-.+..|.++-++. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 36689999999975 24445577888888776 67 79999998888764
No 11
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.91 E-value=2 Score=33.71 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=33.9
Q ss_pred hHHhhhccccccchhhccc-chhHHHHHHHHHHHHHHHHHHH
Q 025992 124 VFYLKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIA 164 (245)
Q Consensus 124 vfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a 164 (245)
.|.+...|+.+..+|.... .+-+....-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 3888999999999998766 5667778899999999998644
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.93 E-value=1.6 Score=26.38 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHP 173 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p 173 (245)
+.|...|++|+.+.+..++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 66999999999999988999998
No 13
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=79.69 E-value=67 Score=31.75 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhccC-CCCCCcHHHHHHHHH---------HHhhhhhhhhHHHHHHHHHhhhhhcc
Q 025992 9 YVYLAKLAEQAERYEEMVKFMDSLVTSST-PATELTVEERNLLSV---------AYKNVIGSLRAAWRIISSIEQKEEGR 78 (245)
Q Consensus 9 ~~~~Aklaeq~ery~Dm~~~mk~i~~~~~-~~~~L~~eERnLls~---------ayKn~i~~~R~s~R~l~~ie~k~~~~ 78 (245)
+.-+|.+.-..|+|+++-.+++..++|.. .-+...++--..|+. .|-..+.-.+.+.+++. ...+ .
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g-~ 361 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG-E 361 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-c
Confidence 45677888888999999999999987641 102333332222222 12233333333333332 2111 1
Q ss_pred cchhhHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccccchhhcccchhHHHH
Q 025992 79 KNEEHVSLVKDYRSKV---------ESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAA 149 (245)
Q Consensus 79 ~~~~~~~~i~~yr~ki---------~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~ 149 (245)
.+ + .+..++..+ -+|=..+-..+|.+.....=. .+...-.+++.|-.+|+|-- -
T Consensus 362 ~~---~-~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~k-----------~ 424 (508)
T KOG1840|consen 362 DN---V-NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEELK-----------K 424 (508)
T ss_pred cc---h-HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHhc-----------c
Confidence 11 0 111111111 134555666666666544321 22344567777777764321 2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCC
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEE 217 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee 217 (245)
...|.+.|.+|..+. ....|.||--++..+|.++- |+-+|+.++|++++..+..-=-..+++.+.+
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 345888999999999 78999999999999999986 5678999999999999886655555555543
No 14
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=74.08 E-value=95 Score=30.67 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCC------CCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025992 144 DERKAAAENTMLSYKAAQDIALTDLA------PTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (245)
Q Consensus 144 ~~~~~~~~~a~~aY~~A~~~a~~~L~------pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (245)
..|..+++.-...|...++... .++ +..|.-+-.++.|-.-+|+.+|+.++|++...+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3455566666666666554332 233 235777888889988899999999999998887765
No 15
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=71.68 E-value=3.9 Score=24.71 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHH
Q 025992 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACT 198 (245)
Q Consensus 156 aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~ 198 (245)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 4677775 345554 456788998886 699999863
No 16
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=70.16 E-value=27 Score=24.11 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=30.1
Q ss_pred CcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 025992 172 HPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (245)
Q Consensus 172 ~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ 210 (245)
||.......|.+..|++ +|+.++|+...++|++- ...
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~ 37 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQ 37 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHH
Confidence 78888888999998886 79999999999999888 554
No 17
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.25 E-value=13 Score=21.32 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 9 ~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
+..++.+..+.|+|+++++++++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46789999999999999999999987
No 18
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=67.83 E-value=1.6e+02 Score=30.64 Aligned_cols=96 Identities=21% Similarity=0.218 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccccchhhccc-chhHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 025992 96 SELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKV-GDERKAAAENTMLSYKAAQDIALTDLAPTHPI 174 (245)
Q Consensus 96 ~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p~ 174 (245)
+|..++...++++... ... .-+---+++-|=-|-..|--.+ .++|...-.++.++|++|.+ +.|+||
T Consensus 411 eegldYA~kai~~~~~----~~~--~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp- 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGG----QRS--HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP- 478 (799)
T ss_pred hhHHHHHHHHHHHhhh----hhh--hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc-
Confidence 5666666666653311 111 1112234566767766665444 67888889999999999975 678999
Q ss_pred hHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025992 175 RLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (245)
Q Consensus 175 rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (245)
-...+.|++|-+ .++.+.|...++.++.-
T Consensus 479 --~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 479 --LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred --hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 334555666655 68888888888877654
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=67.40 E-value=1.8e+02 Score=31.15 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 9 ~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
.+.+|.+..+.|+|++++...++++.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34556666667777777777766553
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=65.19 E-value=1.5e+02 Score=29.30 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 8 ~~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
-...++.+..+.|+|++++..+++.+.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345677888888888888888888876
No 21
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=63.87 E-value=15 Score=20.75 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 8 ~~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
-+..+|.+..+.|+++++++.++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999996
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=61.45 E-value=82 Score=25.11 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=80.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHH
Q 025992 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSL 86 (245)
Q Consensus 7 e~~~~~Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~~~ 86 (245)
.-+..++...-..|+|+.++..+.+.+. .. | -+..-...++..|-.. +....+...+........... ......
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~-p-~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~-~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE--HD-P-DDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNNG-DVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-c-ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH-HHHHHH
Confidence 3456778888888999999999999987 32 3 3344445555555433 444444444432222211110 001111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 025992 87 VKDY-RSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIAL 165 (245)
Q Consensus 87 i~~y-r~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (245)
..-| ...=-++-...+..++.. |.. .....+.+ . .|..|. ..|+ .+.|...|++++..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~~~-~-l~~~~~-----~~g~-----~~~A~~~~~~~~~~-- 164 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIED------PLY-PQPARSLE-N-AGLCAL-----KAGD-----FDKAEKYLTRALQI-- 164 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc------ccc-ccchHHHH-H-HHHHHH-----HcCC-----HHHHHHHHHHHHHh--
Confidence 1111 111112233344444321 110 01111111 1 232221 1111 35578888887753
Q ss_pred hcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025992 166 TDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (245)
Q Consensus 166 ~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (245)
.|.+| ....+.+..++. .|+.++|+...+++.+.
T Consensus 165 ---~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 165 ---DPQRP---ESLLELAELYYL-RGQYKDARAYLERYQQT 198 (234)
T ss_pred ---CcCCh---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 33343 344456666665 79999999887776654
No 23
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=60.56 E-value=39 Score=22.81 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAF 204 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~af 204 (245)
+.|.++++.++.+ +|--..+-++++.+++. +|+.++|+....+++
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 4456666666543 45556677778888887 799999988777766
No 24
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=59.59 E-value=22 Score=22.26 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 8 ~~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
-...+|+...+.|+++++++..+++++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999997
No 25
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=58.80 E-value=91 Score=24.98 Aligned_cols=70 Identities=19% Similarity=0.071 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHH------HHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYY------EILNSSEKACTMAKQAFEEAIAELDTLGEESYKDST 223 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~y------ei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~ 223 (245)
.+.|..+|++|+.+ .|.+ .+...|.++.++ ..+|+.+.|.....+|+.-- ...-.++.+.+.++.
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~a~~~~p~~~~~~~ 158 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW-KQAIALAPGNYIEAQ 158 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH-HHHHHhCcccHHHHH
Confidence 35688889888865 3333 333445555554 24789988887777765432 222225556666666
Q ss_pred HHHHH
Q 025992 224 LIMQL 228 (245)
Q Consensus 224 ~ilql 228 (245)
.-|..
T Consensus 159 ~~~~~ 163 (168)
T CHL00033 159 NWLKI 163 (168)
T ss_pred HHHHH
Confidence 55543
No 26
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.74 E-value=29 Score=19.83 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 8 ~~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
-+..++++..+.|.++.++.++++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 27
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=57.42 E-value=32 Score=22.88 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA 203 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~a 203 (245)
+.|.+.|++++.. +|-...+.++++..|+. .|+.++|..+..++
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4577777777653 34455556667777777 59999988876654
No 28
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=56.98 E-value=43 Score=27.67 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 025992 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSH 112 (245)
Q Consensus 40 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eii~lid~~ 112 (245)
|.+|.|-|.-+....|......|.+.|.+..--.+.- +........-++-.++++++|..+-++.+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999864322221 00000000224455566777777777777666654
No 29
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=55.27 E-value=83 Score=26.18 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCc--hHHHHHH
Q 025992 148 AAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEES--YKDSTLI 225 (245)
Q Consensus 148 ~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~--~~ds~~i 225 (245)
.--+.|.++|..|.. |.|.||. ...|.++-+.- +|+.+.|. ++|+.|+.--+..++.. ..-+...
T Consensus 83 g~~~~AI~aY~~A~~-----L~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 83 KHWGEAIYAYGRAAQ-----IKIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred hhHHHHHHHHHHHHh-----cCCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHHH
Confidence 345778999998875 4455553 24555555553 78888765 57777777654333321 3336666
Q ss_pred HHHHHh
Q 025992 226 MQLLRD 231 (245)
Q Consensus 226 lqlLrd 231 (245)
+..|.|
T Consensus 150 L~~l~~ 155 (157)
T PRK15363 150 LQQLSD 155 (157)
T ss_pred HHHhhc
Confidence 666655
No 30
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=53.66 E-value=27 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 9 ~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
+..+|.+..+.|.|+.++++.++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45789999999999999999998654
No 31
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=53.31 E-value=29 Score=19.96 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 9 ~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
+..++.+..+.|+|++++.+.++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 45678888999999999999999997
No 32
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=52.74 E-value=54 Score=26.35 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (245)
.+.|...|++|+.+. |.++.......|.++.+.. +|+.++|+...++|+.
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 356888899988763 2333333455666665554 7999999999888774
No 33
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.86 E-value=64 Score=27.65 Aligned_cols=81 Identities=28% Similarity=0.373 Sum_probs=48.4
Q ss_pred cchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc---chHHHhhhHHHHHHHHhCCHHHH---HHHHHHHHHHHH
Q 025992 135 RYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHP---IRLGLALNFSVFYYEILNSSEKA---CTMAKQAFEEAI 208 (245)
Q Consensus 135 RYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p---~rLgL~LN~SVF~yei~~~~~~A---~~iak~afd~a~ 208 (245)
=-++-|..+.+.++..+.|..-|++|+.+- |..+ .-||.|+--=-|+. .+..+| .+.|...|+.|.
T Consensus 36 LELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~---~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 36 LELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLT---PDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHH
Confidence 335667788888889999999999998753 2222 44566655444433 445455 456677788887
Q ss_pred HhhcccCCCchHHHHHH
Q 025992 209 AELDTLGEESYKDSTLI 225 (245)
Q Consensus 209 ~~ld~l~ee~~~ds~~i 225 (245)
.. +-+.+.|+-+..+
T Consensus 108 ~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 108 DE--DPNNELYRKSLEM 122 (186)
T ss_dssp HH---TT-HHHHHHHHH
T ss_pred hc--CCCcHHHHHHHHH
Confidence 74 3345667766544
No 34
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=51.27 E-value=70 Score=28.87 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025992 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (245)
Q Consensus 40 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eii~lid~~L 113 (245)
|+.|.|-|.-|+...+......|.|+|-+..=.-+...+.... .-.+--.+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999864332221111110 1244455778888888888888887655
No 35
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=49.89 E-value=23 Score=28.16 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhc
Q 025992 186 YYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (245)
Q Consensus 186 ~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 238 (245)
|-++...+..+.++=.++|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 44455555556666677788887777766554333346777999999999983
No 36
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=48.38 E-value=69 Score=27.47 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=48.8
Q ss_pred CCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025992 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (245)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eii~lid~~L 113 (245)
.|+||.|-|.=|..-.|...-.-|-|.|.+.-=... ..+....-...-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d-~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAND-KIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999888521110 00100000112355566777788888877777777654
No 37
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.83 E-value=31 Score=32.02 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=40.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhh
Q 025992 183 SVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWT 237 (245)
Q Consensus 183 SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlLrdNl~~W~ 237 (245)
+-.|-+ .|.+..|+++.+.++ .+|.|+|++++.-+.++-.++||+..=.
T Consensus 286 a~~yle-~g~~neAi~l~qr~l-----tldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 286 ARAYLE-AGKPNEAIQLHQRAL-----TLDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHH-cCChHHHHHHHHHHh-----hcChhhhHHHHHHHHHHHHhccchhhhh
Confidence 334444 699999999999875 3788999999999999999999987643
No 38
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=46.94 E-value=87 Score=22.59 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (245)
+.|.+.|+.+.. +.|.||......++.+..++. +|+.++|.....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777777764 346776555555666655554 89999999887776665
No 39
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=45.30 E-value=62 Score=34.26 Aligned_cols=78 Identities=15% Similarity=-0.003 Sum_probs=48.3
Q ss_pred chHhHHhhhccccccch-hhcccch--hHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHH
Q 025992 121 ESKVFYLKMKGDYYRYL-AEFKVGD--ERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKAC 197 (245)
Q Consensus 121 eskvfy~KmkgDyyRYl-aE~~~~~--~~~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~ 197 (245)
....||++..|||+.-. |-+.-+. ++-.-.++|..+|+++++ +.|.||. +||+=-|+|.-. +.++|.
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-----~D~~n~~----aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK-----ADRDNPE----IVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCcccHH----HHHHHHHHHHHh-hHHHHH
Confidence 44456666666665332 1121111 111224668889988885 3477775 666655555555 999999
Q ss_pred HHHHHHHHHHH
Q 025992 198 TMAKQAFEEAI 208 (245)
Q Consensus 198 ~iak~afd~a~ 208 (245)
+++++|+.--+
T Consensus 170 ~m~~KAV~~~i 180 (906)
T PRK14720 170 TYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 40
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=44.48 E-value=40 Score=23.76 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHH
Q 025992 156 SYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (245)
Q Consensus 156 aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~ 202 (245)
-|++|+++.+. .+.+|..+....-++--++ -+|+.++|+..-++
T Consensus 40 ~y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 40 KYEEAIELLQK--LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHC--HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHH--hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhc
Confidence 34455555533 3333433444444433333 36777777765544
No 41
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=44.45 E-value=93 Score=25.14 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (245)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 467888888887542 222223345666666665 7999999998887766
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=43.30 E-value=3.4e+02 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 8 ~~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
-...++.+..+.|+|++++...+++++
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666666666666666665
No 43
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=43.09 E-value=1.2e+02 Score=23.71 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEE 206 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 206 (245)
-+.|...|++|+.. .| +.|.|-+..++.+--+- .+|++++|..+-++++.+
T Consensus 17 ~~~Ai~~Y~~Al~~---gL--~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 17 EEEAIPLYRRALAA---GL--SGADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHHc---CC--CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 35689999999752 34 44555556666655544 589999999999887754
No 44
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=42.24 E-value=2.8e+02 Score=28.90 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHH-HhhhHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLG-LALNFSVFYYEI 189 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLg-L~LN~SVF~yei 189 (245)
-++.++|-++|+.+|...+.|.-.+-|= =+||..+|||+.
T Consensus 701 ~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 701 GKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 5668999999999999888755444443 379999999963
No 45
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=42.22 E-value=31 Score=27.16 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=41.3
Q ss_pred HHHHhCCHH-HHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhc
Q 025992 186 YYEILNSSE-KACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (245)
Q Consensus 186 ~yei~~~~~-~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 238 (245)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|.+|-.+|+-
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 566777666 7778888899999988877665544 677888999999999983
No 46
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=42.02 E-value=54 Score=26.90 Aligned_cols=61 Identities=26% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHhhhH-HHHH-HHH--hCCHHHHHHHHHHHHHHHHHhhcc
Q 025992 153 TMLSYKAAQDIALTDLAPTHPIRLGLALNF-SVFY-YEI--LNSSEKACTMAKQAFEEAIAELDT 213 (245)
Q Consensus 153 a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~-SVF~-yei--~~~~~~A~~iak~afd~a~~~ld~ 213 (245)
...+|-+++.-....++...|+.++..|.+ .||. .+- ....+..-.....++++|++.+..
T Consensus 83 l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 83 LAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666567888889999999999 5666 331 112233457789999999987664
No 47
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=40.55 E-value=1.7e+02 Score=24.56 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=44.5
Q ss_pred CCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025992 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (245)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eii~lid~~L 113 (245)
.|+||.|-|.=|....|...-..|.++|.+..=--+.- +........-++-.+++++++..+.++.+.-||..+
T Consensus 93 iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 93 FPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999888999888852111100 000000001134445566666666666666666543
No 48
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=37.52 E-value=1e+02 Score=25.89 Aligned_cols=74 Identities=24% Similarity=0.257 Sum_probs=44.1
Q ss_pred CCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025992 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (245)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eii~lid~~L 113 (245)
.|++|.|-|.=|....|...-..|.+.|.+..--.+.- +........-++-.++.++++..+.++.+.-||..+
T Consensus 98 iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 98 LPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999888999888753111110 000000001133444556666666666666666543
No 49
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=37.40 E-value=3e+02 Score=24.44 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=16.7
Q ss_pred HHHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 025992 176 LGLALNFSVFYYEILNSSEKACTMAKQA 203 (245)
Q Consensus 176 LgL~LN~SVF~yei~~~~~~A~~iak~a 203 (245)
.....+.+.++.. .|+.++|+.+..++
T Consensus 186 ~~~~~~la~~~~~-~G~~~~A~~~~~~~ 212 (355)
T cd05804 186 GHNWWHLALFYLE-RGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 3344455655444 67777777777666
No 50
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.29 E-value=2.2e+02 Score=23.80 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhh
Q 025992 24 EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGS 60 (245)
Q Consensus 24 Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~ 60 (245)
..++..+++++ .. .+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~e--e~-eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIE--ED-EELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHH--Hh-hcCCHHHHHHHHhhhHHHhhc
Confidence 45677778886 43 899999999999999988753
No 51
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=36.77 E-value=1.2e+02 Score=25.66 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=44.3
Q ss_pred CCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025992 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (245)
Q Consensus 39 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eii~lid~~L 113 (245)
.|+||.|-|.=|....|...-.-|.+.|.+..--.+.- +.....-..-++-.++.++|+..+.++.+.-||..+
T Consensus 102 iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 102 IPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999888899888853211110 000000001134445556666666666666666543
No 52
>COG4499 Predicted membrane protein [Function unknown]
Probab=34.56 E-value=81 Score=30.17 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=40.0
Q ss_pred hHHHhhhHHHHHHHHhCCHHHHHHHHHHHH-----HHHHHhhcccCCCchHHH
Q 025992 175 RLGLALNFSVFYYEILNSSEKACTMAKQAF-----EEAIAELDTLGEESYKDS 222 (245)
Q Consensus 175 rLgL~LN~SVF~yei~~~~~~A~~iak~af-----d~a~~~ld~l~ee~~~ds 222 (245)
-|-+++=|.+|+|-+....+.||.-|.+|| ++.++.++.+|.++-+.+
T Consensus 230 llvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 230 LLVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 344678899999999999999999999995 789999998887765543
No 53
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=33.96 E-value=1.1e+02 Score=28.45 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (245)
+.|.+.|.+|+.+. |-...+.+|.+..|.. +|+.+.|+..+.+|++
T Consensus 19 ~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 19 ALAVDLYTQAIDLD--------PNNAELYADRAQANIK-LGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
No 54
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=32.75 E-value=74 Score=16.11 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 9 YVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 9 ~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
+..++.+..+.++|++++..+.+.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45678888889999999999998886
No 55
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=32.48 E-value=1.5e+02 Score=19.55 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhh
Q 025992 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKN 56 (245)
Q Consensus 7 e~~~~~Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn 56 (245)
+.+..++.++-+.|+|++++.+.++.++ .+ |. +..=..-++.+|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~-p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIE--LD-PN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH--HS-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CC-CHHHHHHHHHHHHH
Confidence 3566788999999999999999999998 53 43 34444444444443
No 56
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=32.43 E-value=68 Score=21.18 Aligned_cols=53 Identities=17% Similarity=0.386 Sum_probs=32.0
Q ss_pred HhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 025992 18 QAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKE 75 (245)
Q Consensus 18 q~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k~ 75 (245)
+.|+|++++..+++++. .. |. +.+=+-.+..+|-.. |..-.|.+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RN-PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HT-TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH--HC-CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 45677777777777776 32 33 555555566665544 66666666776655554
No 57
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.30 E-value=97 Score=20.03 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 025992 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLS 51 (245)
Q Consensus 10 ~~~Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls 51 (245)
+-+|+..-..|.++.+-+.+.+++. .+.++...+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~--~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE--EGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Confidence 4689999999999999999999996 433445555666654
No 58
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.66 E-value=1.1e+02 Score=31.33 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchH-HHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRL-GLALNFSVFYYEILNSSEKACTMAKQAF 204 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rL-gL~LN~SVF~yei~~~~~~A~~iak~af 204 (245)
-++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||. |+..--++...+-+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek-~n~~iti~~I~~LI 710 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEK-GNDGITIKHIESLI 710 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhc-CCCcccHHHHHHHH
Confidence 456799999999999999999998777 4578988889985 44333333333333
No 59
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=31.48 E-value=1.5e+02 Score=19.34 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 025992 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIIS 69 (245)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~ 69 (245)
-+|...-+.|+|++++..+++++. . .+-+.+=+..+..++- ..+....|...+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--~--~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--Q--DPDNPEAWYLLGRILY-QQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--C--STTHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--H--CCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 467888899999999999999997 4 3446666666666665 3344444444443
No 60
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=30.42 E-value=2.6e+02 Score=24.79 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHH-HhhhHHHHHHHHhCCHHHHHHHHHHHHHHHH--HhhcccCCCchHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLG-LALNFSVFYYEILNSSEKACTMAKQAFEEAI--AELDTLGEESYKDSTLIM 226 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLg-L~LN~SVF~yei~~~~~~A~~iak~afd~a~--~~ld~l~ee~~~ds~~il 226 (245)
.+.|.-.|.+|-.+.. .++|....+|+ +.+|+++-.+..-++.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3557888888887775 78889889988 7889999999853499999999999988631 233333333322245667
Q ss_pred HHHHhhHhhhhcc
Q 025992 227 QLLRDNLTLWTSD 239 (245)
Q Consensus 227 qlLrdNl~~W~~e 239 (245)
++|-...-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 7777666666543
No 61
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=30.28 E-value=1.4e+02 Score=25.13 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCC--HHHHHHHHHHHH
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNS--SEKACTMAKQAF 204 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~--~~~A~~iak~af 204 (245)
+.|..+|++|+.+ .|.+ ..+.++++.-+|...|+ .++|.++..+++
T Consensus 90 ~~A~~a~~~Al~l-----~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 90 DNALLAYRQALQL-----RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3466666666643 2333 23334445433333444 355555555543
No 62
>PRK15331 chaperone protein SicA; Provisional
Probab=29.80 E-value=2.6e+02 Score=23.47 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 025992 149 AAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQL 228 (245)
Q Consensus 149 ~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilql 228 (245)
-=+.|.++|--|.-+... .|.-|.+.| -.|=.+|++.+|.. +|.-|+..-. ..+-..-+...+..
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~--dp~p~f~ag-------qC~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~ 150 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKN--DYRPVFFTG-------QCQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEA 150 (165)
T ss_pred HHHHHHHHHHHHHHcccC--CCCccchHH-------HHHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHH
Confidence 345677777777765532 333344444 34446899988876 7888877311 11223347777777
Q ss_pred HHhhHhh
Q 025992 229 LRDNLTL 235 (245)
Q Consensus 229 LrdNl~~ 235 (245)
|.+|...
T Consensus 151 l~~~~~~ 157 (165)
T PRK15331 151 LKTAETE 157 (165)
T ss_pred HHccccc
Confidence 7777654
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=29.44 E-value=97 Score=21.72 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH
Q 025992 10 VYLAKLAEQAERYEEMVKFMDS 31 (245)
Q Consensus 10 ~~~Aklaeq~ery~Dm~~~mk~ 31 (245)
..+|+...+.|+|+++++++.+
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 3446666666666666666543
No 64
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=29.10 E-value=1.2e+02 Score=32.32 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhh--cCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 025992 155 LSYKAAQDIALT--DLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAE 210 (245)
Q Consensus 155 ~aY~~A~~~a~~--~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ 210 (245)
++|+.|+.+-.. ...|.||+-|...-||=+| -||.+.++.+|-.||..+...
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.63 E-value=79 Score=32.01 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=40.9
Q ss_pred hccccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHH
Q 025992 129 MKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAF 204 (245)
Q Consensus 129 mkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~af 204 (245)
+-++.||-+.....---|++--+.|+-.|++|++ +||.-.-+.-=...+++. +|..++|+.+-.+|+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 4444444443333222233344556666666653 456666666666777665 799999999988885
No 66
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.35 E-value=1.6e+02 Score=27.22 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHH
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQA 203 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~a 203 (245)
+.|.+.|.+|+ .|.|+|||+.. |-|-=|- -+|+.+.|++=|+.|
T Consensus 98 ~eAv~kY~~AI-----~l~P~nAVyyc---NRAAAy~-~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 98 QEAVDKYTEAI-----ELDPTNAVYYC---NRAAAYS-KLGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHHHH-----hcCCCcchHHH---HHHHHHH-HhcchHHHHHHHHHH
Confidence 44677777776 37788887643 2222222 255555555555554
No 67
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=27.84 E-value=3.2e+02 Score=21.90 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHH------hCCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHH
Q 025992 151 ENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEI------LNSSEKACTMAKQAFEEAIAELDTLGEESYKDSTL 224 (245)
Q Consensus 151 ~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei------~~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ 224 (245)
+.|..+|++|+.+ .|.++ ....+.+..++.. .++.+.|....++|.+-.-..+ .++.+.|.++..
T Consensus 89 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-~~~p~~~~~~~~ 159 (172)
T PRK02603 89 DKALEYYHQALEL-----NPKQP---SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-RLAPNNYIEAQN 159 (172)
T ss_pred HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-hhCchhHHHHHH
Confidence 5578888888864 23332 2233444444432 2445555555444433222211 134455655555
Q ss_pred HHHHH
Q 025992 225 IMQLL 229 (245)
Q Consensus 225 ilqlL 229 (245)
.+..+
T Consensus 160 ~~~~~ 164 (172)
T PRK02603 160 WLKTT 164 (172)
T ss_pred HHHhc
Confidence 44433
No 68
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.02 E-value=1.3e+02 Score=20.14 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 025992 13 AKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQK 74 (245)
Q Consensus 13 Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ie~k 74 (245)
+.++-+.++|+.+++++..++. .+ |+ +..-+.....+|- ..+..-.|.+.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LD-PD-DPELWLQRARCLF-QLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hC-cc-cchhhHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence 4566677888888888888887 43 43 5554444444443 234445555555543333
No 69
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=26.60 E-value=1.9e+02 Score=23.90 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=30.0
Q ss_pred HHhhhhhhhhHHHHHHHH-----Hhhh------hhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025992 53 AYKNVIGSLRAAWRIISS-----IEQK------EEGRKNEEHVSLVKDYRSKVESELSDVCGSIL 106 (245)
Q Consensus 53 ayKn~i~~~R~s~R~l~~-----ie~k------~~~~~~~~~~~~i~~yr~ki~~EL~~~c~eii 106 (245)
=+|++|++.|.||..+.. +.|+ ...++.+.. ..+|.+.+ +|...+|+.|-
T Consensus 9 kvK~Lv~~LreSl~~~~k~AA~~l~qn~~~D~g~~~~~~d~~---~~RFdK~l-EeFysiCDQIE 69 (148)
T PF11568_consen 9 KVKSLVGPLRESLSNLMKTAAQNLQQNSLVDNGTRGKSSDEP---VPRFDKNL-EEFYSICDQIE 69 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCc---HHHHHHHH-HHHHHHHHHHH
Confidence 368888899999887742 3344 111222222 24555555 67889998764
No 70
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=25.91 E-value=56 Score=28.10 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 025992 149 AAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEA 207 (245)
Q Consensus 149 ~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a 207 (245)
.-+.|.++|++|..- .-+ | -.++...+|+.|||..||.=
T Consensus 14 ~Ye~A~~~Ye~av~n---g~~---~--------------q~~Kql~KA~NIAKse~drd 52 (199)
T PF08717_consen 14 AYETARQAYEEAVAN---GSS---P--------------QELKQLKKAMNIAKSEFDRD 52 (199)
T ss_dssp HHHHHHHHHHHHHHC---T-----H--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCC---H--------------HHHHHHHHHHhHHHHHHhHH
Confidence 357799999999761 112 1 13577889999999999843
No 71
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=25.68 E-value=77 Score=24.73 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhc
Q 025992 191 NSSEKACTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 238 (245)
Q Consensus 191 ~~~~~A~~iak~afd~a~~~ld~l~ee~~~ds~~ilqlLrdNl~~W~~ 238 (245)
+.+..+.++=..+|..+...|....+..-.+...+ +-|.+|..+|+.
T Consensus 11 ~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~~~~~~-~AL~~N~rLW~~ 57 (113)
T PF07309_consen 11 QSTRSPREIEARALARAARRLERAREAGPRSREAL-EALHFNRRLWTI 57 (113)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHHHH
Confidence 33444455555677777776665543222222223 999999999984
No 72
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=25.61 E-value=1.1e+02 Score=22.64 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHH----HhhhHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLG----LALNFSVFYY 187 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLg----L~LN~SVF~y 187 (245)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+-
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN 59 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN 59 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555556665433 58999999998 5667777653
No 73
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=25.05 E-value=3.6e+02 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhhhh-----hHHHHHHHH
Q 025992 45 EERNLLSVAYKNVIGSL-----RAAWRIISS 70 (245)
Q Consensus 45 eERnLls~ayKn~i~~~-----R~s~R~l~~ 70 (245)
++...+-+-..++|+.+ |.|+++|..
T Consensus 109 edi~tifvnlHHLiNeyRPhQaResLi~lmE 139 (223)
T KOG0570|consen 109 EDIRTIFVNLHHLINEYRPHQARESLIMLME 139 (223)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556677888999976 578888753
No 74
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.03 E-value=4.4e+02 Score=23.92 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhc----------CCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTD----------LAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIA 209 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~----------L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~ 209 (245)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|.++.|+.+.|..++-..-
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcC
Confidence 344566677666655432 333456888899999999998 69999999999988887664
No 75
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=24.88 E-value=1e+02 Score=22.86 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=32.2
Q ss_pred hhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCcchHHHhhhHHHHHH
Q 025992 127 LKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALT-DLAPTHPIRLGLALNFSVFYY 187 (245)
Q Consensus 127 ~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~-~L~pt~p~rLgL~LN~SVF~y 187 (245)
.+++.|-|+-+.++..- .|+.|-++|.. .+++.||-|+.-++-|.+..-
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~~ 87 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLREA 87 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 46788888888876432 35566667754 799999999999998887653
No 76
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=3.6e+02 Score=25.56 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=50.5
Q ss_pred ccccccchhhccc---chhH----HHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHH
Q 025992 130 KGDYYRYLAEFKV---GDER----KAAAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQ 202 (245)
Q Consensus 130 kgDyyRYlaE~~~---~~~~----~~~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~ 202 (245)
-++||.|+||-.. +... .+.-+.=.+-..++.+-|+.++..+ -+| ...+|-+-||-.| ||++.|.+..+.
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~-ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGES-EVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 4678888888332 2221 1222223344556667776666544 233 3467888887776 999999999999
Q ss_pred HHHHHHH
Q 025992 203 AFEEAIA 209 (245)
Q Consensus 203 afd~a~~ 209 (245)
+++++++
T Consensus 130 t~~ktvs 136 (393)
T KOG0687|consen 130 TYEKTVS 136 (393)
T ss_pred HHHHHhh
Confidence 9999987
No 77
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.48 E-value=71 Score=20.01 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=25.8
Q ss_pred ccccchhhcccchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 025992 132 DYYRYLAEFKVGDERKAAAENTMLSYKAAQDIALTDLAPT 171 (245)
Q Consensus 132 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 171 (245)
|.|--++|+.-..++ -++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 444456666655443 3568888999999998888874
No 78
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=22.93 E-value=6e+02 Score=23.37 Aligned_cols=136 Identities=16% Similarity=0.136 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHhHHhhhccccccchhhcccchhHHH-HHHHHHHHHHHHH
Q 025992 83 HVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKA-AAENTMLSYKAAQ 161 (245)
Q Consensus 83 ~~~~i~~yr~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~-~~~~a~~aY~~A~ 161 (245)
.+..++.=|.+++.+|..--++|...|=..+-......+..+|-..++--|=.+...+...-.++. +...-..++.+-.
T Consensus 199 ~l~~lk~eR~~~~~~Lk~~~dDI~~~ll~~~~~~~~~~~e~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~ 278 (339)
T cd09235 199 QVETIKAEREVIESELKSATFDMKSKFLSALAQDGAINEEAISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFS 278 (339)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCCccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888876655555444332211111122344444441113333333333322222 2222222222221
Q ss_pred HHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCC--CchHHHHHHHHHHHhhHhhhhc
Q 025992 162 DIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFEEAIAELDTLGE--ESYKDSTLIMQLLRDNLTLWTS 238 (245)
Q Consensus 162 ~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd~a~~~ld~l~e--e~~~ds~~ilqlLrdNl~~W~~ 238 (245)
. .... . ..-+..+.+++--..||+.-..-..++.+ ..|.|-+.++.-++.++.-|..
T Consensus 279 ~-~~~~-~------------------~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~ 337 (339)
T cd09235 279 K-EKQS-N------------------SGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEILVKFQNKCSDFVF 337 (339)
T ss_pred H-Hhcc-c------------------chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1110 0 01234456666666666655444445554 6799999999999999998864
No 79
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.91 E-value=5.3e+02 Score=22.71 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 7 e~~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
.-.+..|+++-.+|+|+-+..++..+..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 4567899999999999999999988775
No 80
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=22.87 E-value=5.5e+02 Score=22.95 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=8.8
Q ss_pred hCCHHHHHHHHHHHHH
Q 025992 190 LNSSEKACTMAKQAFE 205 (245)
Q Consensus 190 ~~~~~~A~~iak~afd 205 (245)
.|+.++|..+.++++.
T Consensus 295 ~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 295 QEGPEAAQALLREQLR 310 (389)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 4566666555555444
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.65 E-value=1.3e+02 Score=27.01 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH
Q 025992 150 AENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE 205 (245)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd 205 (245)
.+.|.+.|++|+.++ |-.=-+-=||.-|++.. |.+++|...-.+|..
T Consensus 85 ~~~A~e~YrkAlsl~--------p~~GdVLNNYG~FLC~q-g~~~eA~q~F~~Al~ 131 (250)
T COG3063 85 NDLADESYRKALSLA--------PNNGDVLNNYGAFLCAQ-GRPEEAMQQFERALA 131 (250)
T ss_pred hhhHHHHHHHHHhcC--------CCccchhhhhhHHHHhC-CChHHHHHHHHHHHh
Confidence 466899999998755 22223445899999985 699998876555543
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=22.44 E-value=5.4e+02 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=21.2
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 5 ~re~~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
.++-....|-++-+.|+++++...+.++++
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~ 71 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLD 71 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667777777777777777777765
No 83
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.72 E-value=5.2e+02 Score=22.21 Aligned_cols=60 Identities=23% Similarity=0.223 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhhhHHHHHHHHhCCHHHHHHHHHHHHH---HHHHh
Q 025992 149 AAENTMLSYKAAQDIALTDLAPTHPIRLGLALNFSVFYYEILNSSEKACTMAKQAFE---EAIAE 210 (245)
Q Consensus 149 ~~~~a~~aY~~A~~~a~~~L~pt~p~rLgL~LN~SVF~yei~~~~~~A~~iak~afd---~a~~~ 210 (245)
..+.|.++|.-|+-.+. +...+|...|...=-...+|.-+|+.+.....-++|.+ +|...
T Consensus 92 t~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46779999999998874 44445555554444455778888987777666666644 55543
No 84
>PRK11820 hypothetical protein; Provisional
Probab=20.98 E-value=1.9e+02 Score=26.37 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHhhhHH-HHHHHHhCCHHHHHHHHHHHHHHHHHhhccc
Q 025992 154 MLSYKAAQDIALTDLAPTHPIRLGLALNFS-VFYYEILNSSEKACTMAKQAFEEAIAELDTL 214 (245)
Q Consensus 154 ~~aY~~A~~~a~~~L~pt~p~rLgL~LN~S-VF~yei~~~~~~A~~iak~afd~a~~~ld~l 214 (245)
.++|-+++.-....++...|+.|.-.|.+. |+. +-..+.+..-.....|++.|++.+...
T Consensus 85 ~~~y~~~l~~l~~~~~~~~~~~l~~ll~~p~v~~-~~~~~~~~~~~~l~~al~~AL~~l~~~ 145 (288)
T PRK11820 85 AKQYLEALEELKAELPEAGEISLDDLLRWPGVLE-AEEEDLEALWAALLAALDEALDDLIEM 145 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhCCCCccc-CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355656554443466544599999888874 432 223466666678899999999887653
No 85
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=20.93 E-value=1.3e+02 Score=24.19 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 025992 148 AAAENTMLSYKAAQDIALTDLAPTHPIRLG 177 (245)
Q Consensus 148 ~~~~~a~~aY~~A~~~a~~~L~pt~p~rLg 177 (245)
.....|..+|+.+-.++. .+|+.-||..|
T Consensus 20 ~a~~~s~~~~~~a~~~~~-~ip~GQPIlVG 48 (126)
T PF12083_consen 20 KAAARSEAAYEAANRMAE-AIPFGQPILVG 48 (126)
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCCCCeecc
Confidence 456778899999999884 79999999998
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=20.80 E-value=1.1e+03 Score=25.53 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025992 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 8 ~~~~~Aklaeq~ery~Dm~~~mk~i~~ 34 (245)
..+.+|++.-..|+|++++..++++++
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 357888999999999999999999986
No 87
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=20.49 E-value=2e+02 Score=19.70 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHhcCHHHHHHHHHHHhh
Q 025992 14 KLAEQAERYEEMVKFMDSLVT 34 (245)
Q Consensus 14 klaeq~ery~Dm~~~mk~i~~ 34 (245)
.=.=|.|+|+++.+++++++.
T Consensus 31 ~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 334477999999999999985
No 88
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=20.46 E-value=1.1e+03 Score=25.48 Aligned_cols=56 Identities=11% Similarity=-0.076 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 025992 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSI 71 (245)
Q Consensus 11 ~~Aklaeq~ery~Dm~~~mk~i~~~~~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~i 71 (245)
.++.++-..|+|++++...++++. .. |. +..=...|..+|.. .+....+.+.+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~--~~-P~-~~~a~~~Lg~~~~~-~g~~~eA~~~y~~a 411 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQ--VD-NT-DSYAVLGLGDVAMA-RKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hC-CC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 345566678999999999999997 43 43 22333445555532 35555565555443
No 89
>PHA02103 hypothetical protein
Probab=20.24 E-value=29 Score=27.18 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=11.8
Q ss_pred ccccccchhhcccch
Q 025992 130 KGDYYRYLAEFKVGD 144 (245)
Q Consensus 130 kgDyyRYlaE~~~~~ 144 (245)
.-|||||.+|-..+.
T Consensus 78 ipdyyryf~ee~e~i 92 (135)
T PHA02103 78 IPDYYRYFGEEAEGV 92 (135)
T ss_pred ChHHHHHhcccchhh
Confidence 579999999866553
Done!