BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025993
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of
E. Coli Methionine Sulfoxide Reductase A (Msra)
Length = 211
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 42 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVYD 101
Query: 99 PRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK 158
P VI++ QLL+VFW +HD Q QG D G QYRS I+ E+ A S ER Q
Sbjct: 102 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 161
Query: 159 SSI----VTTQIQQLVAFYPAEPEHQKFELKRNP 188
++ +TT+I FY AE +HQ++ L +NP
Sbjct: 162 AADDDRHITTEIANATPFYYAEDDHQQY-LHKNP 194
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 42 MEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD 101
Query: 99 PRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK 158
P VI++ QLL+VFW +HD Q QG D G QYRS I+ E+ A S ER Q
Sbjct: 102 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 161
Query: 159 SSI----VTTQIQQLVAFYPAEPEHQKFELKRNP 188
++ +TT+I FY AE +HQ++ L +NP
Sbjct: 162 AADDDRHITTEIANATPFYYAEDDHQQY-LHKNP 194
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of
Methionine Sulfoxide Reductase A From Escherichia Coli,
A 23 Kda Protein
Length = 212
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD 102
Query: 99 PRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK 158
P VI++ QLL+VFW +HD Q QG D G QYRS I+ E+ A S ER Q
Sbjct: 103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 162
Query: 159 SSI----VTTQIQQLVAFYPAEPEHQKFELKRNP 188
++ +TT+I FY AE +HQ++ L +NP
Sbjct: 163 AADDDRHITTEIANATPFYYAEDDHQQY-LHKNP 195
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra
Length = 212
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF +G FW +E F L GV T VG+AGG NP ++ + HAE V+V Y P
Sbjct: 43 QMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRP 102
Query: 100 RVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM---K 156
I+F +LL+VFW +HD Q QG D G QYRS ++ + A SKE Q K
Sbjct: 103 EHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSK 162
Query: 157 SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 188
+TT I++ FY AE HQ++ L +NP
Sbjct: 163 HNFGPITTDIREGQVFYYAEDYHQQY-LSKNP 193
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
Length = 217
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF +G FW +E F L GV T VG+AGG NP ++ + HAE V+V + P
Sbjct: 52 QMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQP 111
Query: 100 RVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM---K 156
I+F +LL+VFW +HD Q QG D G+QYRS I+ E A SKE Q +
Sbjct: 112 EHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSE 171
Query: 157 SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 188
++TT I++ FY AE HQ++ L ++P
Sbjct: 172 HGFGLITTDIREGQTFYYAEDYHQQY-LSKDP 202
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide
Reductase From Sinorhizobium Meliloti 1021
Length = 168
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVIN 103
K AV A G FW + + L GV+ T VGY GG N +RN G HAE +++ +DP I+
Sbjct: 3 KRAVLAGGCFWGXQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERIS 62
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHS-KEREQMKSKSSIV 162
+R++LE+F+ HD QG D+G YRS I+ E+ R+A + + E V
Sbjct: 63 YRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKV 122
Query: 163 TTQIQQLVAFYPAEPEHQKFELKRNP 188
T+++ + F+ AEPEHQ + L+R P
Sbjct: 123 VTEVEPVRDFWEAEPEHQNY-LERYP 147
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide
Reductase
Length = 199
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF G FW +E F L GV T VG+AGG NP ++ + HAE V+V + P
Sbjct: 44 QXAVFGXGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQP 103
Query: 100 RVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM---K 156
I+F +LL+VFW +HD Q QG D G+QYRS I+ E A SKE Q +
Sbjct: 104 EHISFEELLKVFWENHDPTQGXRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSE 163
Query: 157 SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 188
++TT I++ FY AE HQ++ L ++P
Sbjct: 164 HGFGLITTDIREGQTFYYAEDYHQQY-LSKDP 194
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine
Sulfoxide Reductase A In Complex With Protein-Bound
Methionine
Length = 203
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVIN 103
+ A+ A G FW + + GVV T VGY+GG+ N +RN G HAE+V++ +DP V +
Sbjct: 26 QKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTD 85
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHS-KEREQMKSKSSIV 162
+R LLE F+ HD QG D G YRS IF ++ R+A + + E V
Sbjct: 86 YRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV 145
Query: 163 TTQIQQLVAFYPAEPEHQKFELKRNP 188
T++ F+ AEPEHQ + L+R P
Sbjct: 146 VTEVSPAGDFWEAEPEHQDY-LQRYP 170
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And
Plastidial Type A Methionine Sulfoxide Reductases
Length = 261
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 36 NDELGRPLKA-AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHA 90
+D+L P + A F G FW E F + GV +T VGY G NP + ++ +H
Sbjct: 86 DDDLPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHN 145
Query: 91 ESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSK 150
E V+V+YDP+ +F L++V W HD + QG DVG QYRS I+ E+ + A S
Sbjct: 146 EVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESL 205
Query: 151 EREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPF 189
ER+Q IV T+I FY AE HQ++ K F
Sbjct: 206 ERQQKLLNRKIV-TEILPAKKFYRAEEYHQQYLAKGGRF 243
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Complex With A Substrate)
Length = 194
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A GSFW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGSFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 163
+L+ F+ D + QG D G QYRS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 164 TQIQQLVAFYPAEPEHQKFELKRNP 188
+ + L FY AE HQ + L +NP
Sbjct: 127 VENEPLKNFYDAEEYHQDY-LIKNP 150
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria
Meningitidis Pilb (sulfenic Acid Form)
Length = 194
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGXFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 163
+L+ F+ D + QG D G QYRS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 164 TQIQQLVAFYPAEPEHQKFELKRNP 188
+ + L FY AE HQ + L +NP
Sbjct: 127 VENEPLKNFYDAEEYHQDY-LIKNP 150
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 194
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 163
+L+ F+ D + QG D G QYRS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 164 TQIQQLVAFYPAEPEHQKFELKRNP 188
+ + L FY AE HQ + L +NP
Sbjct: 127 VENEPLKNFYDAEEYHQDY-LIKNP 150
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Oxidized Form)
Length = 193
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 7 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 66
Query: 104 FRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 163
+L+ F+ D + QG D G QYRS ++ E + A + +REQ K + +V
Sbjct: 67 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 125
Query: 164 TQIQQLVAFYPAEPEHQKFELKRNP 188
+ + L FY AE HQ + L +NP
Sbjct: 126 VENEPLKNFYDAEEYHQDY-LIKNP 149
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 183
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 14/157 (8%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPE------FRNLG----DHAE 91
K A GSFW +E ++ LN +V + VGYA G ++ + ++ + D AE
Sbjct: 16 KLITLASGSFWGTEHMYRKYLNDRIVDSKVGYANGEESKKDSPSSVSYKRVSGGDTDFAE 75
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE 151
+QV Y+P+VI R+L + F+ HD QGPD G QYRS +F + + + A KE
Sbjct: 76 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 135
Query: 152 REQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 188
Q K + I T I+ + FY AE HQ + L +NP
Sbjct: 136 EWQPKWGNKIATV-IEPIKNFYDAEEYHQLY-LDKNP 170
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
pdb|3PIL|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 184
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPEF-------RNLG---DHAE 91
K A G FW +E ++ LN +V VGYA G ++ + R G D AE
Sbjct: 17 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 76
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE 151
+QV Y+P+VI R+L + F+ HD QGPD G QYRS +F + + + A KE
Sbjct: 77 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 136
Query: 152 REQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 188
Q K + I T I+ + FY AE HQ + L +NP
Sbjct: 137 EWQPKWGNKIATV-IEPIKNFYDAEEYHQLY-LDKNP 171
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGS--KTNPEFRNLGDHAESVQVEYDPRVINFR 105
A G FW E F ++GV+ T+VGYA G TN + DHAE+VQV YD + ++ R
Sbjct: 7 LAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLR 66
Query: 106 QLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRL-AAHSKEREQMKSKSSIVTT 164
++L ++ D + QG D G QYR+ I+ +E+ L A ++ +EQ + +
Sbjct: 67 EILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQ--DEADLPAIYTVVQEQERMLGRKIAV 124
Query: 165 QIQQLVAFYPAEPEHQKFELKRNP 188
+++QL + AE HQ + L++NP
Sbjct: 125 EVEQLRHYILAEDYHQDY-LRKNP 147
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|C Chain C, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
Length = 187
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 14/157 (8%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPEF-------RNLG---DHAE 91
K A G FW +E ++ LN +V VGYA G ++ + R G D AE
Sbjct: 20 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 79
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKE 151
+QV Y+P+VI R+L + F+ HD QGPD G QYRS +F + + + A KE
Sbjct: 80 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 139
Query: 152 REQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 188
Q K + I T I+ + FY AE HQ + L +NP
Sbjct: 140 EWQPKWGNKIATV-IEPIKNFYDAEEYHQLY-LDKNP 174
>pdb|4APW|A Chain A, Alp12 Filament Structure
pdb|4APW|B Chain B, Alp12 Filament Structure
pdb|4APW|C Chain C, Alp12 Filament Structure
pdb|4APW|D Chain D, Alp12 Filament Structure
pdb|4APW|E Chain E, Alp12 Filament Structure
pdb|4APW|F Chain F, Alp12 Filament Structure
pdb|4APW|G Chain G, Alp12 Filament Structure
pdb|4APW|H Chain H, Alp12 Filament Structure
pdb|4APW|I Chain I, Alp12 Filament Structure
pdb|4APW|J Chain J, Alp12 Filament Structure
pdb|4APW|K Chain K, Alp12 Filament Structure
pdb|4APW|L Chain L, Alp12 Filament Structure
pdb|4APW|M Chain M, Alp12 Filament Structure
pdb|4APW|N Chain N, Alp12 Filament Structure
pdb|4APW|O Chain O, Alp12 Filament Structure
pdb|4APW|P Chain P, Alp12 Filament Structure
Length = 329
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 126 DVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFY-PAEPEHQKFEL 184
++ N+Y + G E++L +K+ K I T+I L Y E K EL
Sbjct: 3 NITNEY-VMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIEL 61
Query: 185 KRNPFLIHLMGNLPQEELEKSNLAAKLNSYAA 216
+LI G E K+NL KL +Y A
Sbjct: 62 DGKEYLIGEQGVEDSSETSKTNLIHKLAAYTA 93
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 102 INFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE-SRLAAHSKEREQMKSKSS 160
+NF++LL T+H C + Q + +I FT+GT ++A HS +K+K
Sbjct: 185 LNFKKLLNEASTTHHCVETGSQ------EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 161 IVTTQIQ 167
T +Q
Sbjct: 239 AGWTGLQ 245
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 102 INFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEE-SRLAAHSKEREQMKSKSS 160
+NF++LL T+H C + Q + +I FT+GT ++A HS +K+K
Sbjct: 185 LNFKKLLNEASTTHHCVETGSQ------EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 161 IVTTQIQ 167
T +Q
Sbjct: 239 AGWTGLQ 245
>pdb|1O9I|A Chain A, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|B Chain B, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|C Chain C, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|D Chain D, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|E Chain E, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
pdb|1O9I|F Chain F, Crystal Structure Of The Y42f Mutant Of Manganese Catalase
From Lactobacillus Plantarum At 1.33a Resolution
Length = 266
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 130 QYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPF 189
+Y+ ++ GTEE AH + +++T I L+ P PE +LKR+P
Sbjct: 54 KYKDLLLDTGTEE---MAHVE----------MISTMIGYLLEDAPFGPE----DLKRDPS 96
Query: 190 LIHLMGNLPQEELEKSNLAAKLNS 213
L M + E L A LN+
Sbjct: 97 LATTMAGMDPEHSLVHGLNASLNN 120
>pdb|1JKU|A Chain A, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|B Chain B, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|C Chain C, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|D Chain D, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|E Chain E, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKU|F Chain F, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum
pdb|1JKV|A Chain A, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|B Chain B, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|C Chain C, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|D Chain D, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|E Chain E, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
pdb|1JKV|F Chain F, Crystal Structure Of Manganese Catalase From Lactobacillus
Plantarum Comlexed With Azide
Length = 266
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 130 QYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPF 189
+Y+ ++ GTEE AH + +++T I L+ P PE +LKR+P
Sbjct: 54 KYKDLLLDTGTEE---MAHVE----------MISTMIGYLLEDAPFGPE----DLKRDPS 96
Query: 190 LIHLMGNLPQEELEKSNLAAKLNS 213
L M + E L A LN+
Sbjct: 97 LATTMAGMDPEHSLVHGLNASLNN 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,234,681
Number of Sequences: 62578
Number of extensions: 227648
Number of successful extensions: 474
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 23
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)