BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025994
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg
Domains: Implications In Chromatin Biology
Length = 172
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 9/164 (5%)
Query: 79 VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 136
V ++IP LK LVDD + IT +L LP NVD ILE Y +YR + +
Sbjct: 5 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYRKSRGNTDNKEYAVN 64
Query: 137 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 194
E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV++ +L
Sbjct: 65 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 124
Query: 195 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
+ ++E++L LL + L D LK+L K+ +T F SA D E +
Sbjct: 125 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 163
>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain
pdb|2AQL|B Chain B, Crystal Structure Of The Mrg15 Mrg Domain
Length = 173
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 9/164 (5%)
Query: 79 VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 136
V ++IP LK LVDD + IT +L LP NVD ILE Y +Y+ + +
Sbjct: 6 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65
Query: 137 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 194
E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV++ +L
Sbjct: 66 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 125
Query: 195 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
+ ++E++L LL + L D LK+L K+ +T F SA D E +
Sbjct: 126 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 164
>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15
pdb|2F5J|B Chain B, Crystal Structure Of Mrg Domain From Human Mrg15
Length = 181
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 9/164 (5%)
Query: 79 VNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVAD--STG 136
V ++IP LK LVDD + IT +L LP NVD ILE Y +Y+ + +
Sbjct: 6 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVN 65
Query: 137 EIVKGLRCYFDKALPIMLLYKSEREQYEDSMA--ADVSPSSVYGAEHLLRLFVKLPELLV 194
E+V G++ YF+ L LLYK ER QY + +A D S VYGA HLLRLFV++ +L
Sbjct: 66 EVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLA 125
Query: 195 HAKIEEETLTLLQHKLVDLLKFLQKHQSTFFLSRYHSAEDVETS 238
+ ++E++L LL + L D LK+L K+ +T F SA D E +
Sbjct: 126 YTPLDEKSLALLLNYLHDFLKYLAKNSATLF-----SASDYEVA 164
>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|B Chain B, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|C Chain C, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|D Chain D, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
Length = 211
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 89/188 (47%), Gaps = 38/188 (20%)
Query: 76 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVA--- 132
E + I+IP LKKQL DDC +I +LVKLP N+ ILE Y + + A
Sbjct: 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANER 64
Query: 133 -----------------------DSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAA 169
D E+V GLR FD LP++LLY E+ QY+ ++
Sbjct: 65 PRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS 124
Query: 170 --DVSPSS----------VYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFL 217
D+ P++ +YGA+HLLRLFVKLPE+L E+ L L L+FL
Sbjct: 125 KYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFL 184
Query: 218 QKHQSTFF 225
++ FF
Sbjct: 185 AEYHDDFF 192
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 186 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 220
+ L E+ H K + T +L HK+ DL KFL++H
Sbjct: 10 YYTLEEIQKH-KDSKSTWVILHHKVYDLTKFLEEH 43
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 186 FVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 220
+ L E+ H K + T +L HK+ DL KFL++H
Sbjct: 11 YYTLEEIQKH-KDSKSTWVILHHKVYDLTKFLEEH 44
>pdb|2DX7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
pdb|2DX7|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
Length = 228
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 97 FITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGL 142
F+ + K +K+P +++ +K + KK GL+A +TG IV G+
Sbjct: 88 FVEDIRKAIKIPIISMIEETAKKVKELGFKKAGLLA-TTGTIVSGV 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,281,670
Number of Sequences: 62578
Number of extensions: 295367
Number of successful extensions: 710
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 24
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)