Query 025994
Match_columns 245
No_of_seqs 162 out of 375
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5j_A Mortality factor 4-like 100.0 4.4E-56 1.5E-60 376.6 13.5 168 76-243 3-175 (181)
2 2y0n_A MALE-specific lethal 3 100.0 3.5E-53 1.2E-57 366.8 14.8 164 76-239 5-207 (211)
3 3oa6_A MALE-specific lethal 3 99.5 6.2E-15 2.1E-19 114.4 1.1 36 1-36 66-101 (110)
4 3m9q_A Protein MALE-specific l 99.4 1.3E-14 4.3E-19 111.3 1.5 35 1-35 66-100 (101)
5 3m9p_A MALE-specific lethal 3 99.4 2.6E-14 9E-19 110.8 1.2 36 1-36 66-101 (110)
6 3e9g_A Chromatin modification- 99.4 4.2E-14 1.4E-18 112.0 2.2 39 1-39 82-120 (130)
7 2f5k_A MORF-related gene 15 is 99.3 1.7E-13 5.7E-18 105.3 1.6 37 1-37 59-95 (102)
8 2k3y_A Chromatin modification- 99.3 2.5E-13 8.6E-18 109.1 2.4 35 1-35 84-118 (136)
9 2lrq_A Protein MRG15, NUA4 com 99.0 2E-13 6.7E-18 101.8 0.0 35 1-35 49-83 (85)
10 2lcc_A AT-rich interactive dom 98.4 1.8E-08 6.1E-13 73.4 -0.5 26 1-26 46-71 (76)
11 2bud_A Males-absent on the fir 98.0 1.3E-06 4.3E-11 65.6 0.8 22 1-22 55-76 (92)
12 2rnz_A Histone acetyltransfera 97.4 4.1E-05 1.4E-09 57.7 1.1 17 1-17 62-78 (94)
13 2eko_A Histone acetyltransfera 97.3 6.8E-05 2.3E-09 55.7 1.5 17 1-17 51-67 (87)
14 2ro0_A Histone acetyltransfera 97.3 4.7E-05 1.6E-09 57.1 0.6 17 1-17 60-76 (92)
15 1wgs_A MYST histone acetyltran 97.3 6.5E-05 2.2E-09 60.0 1.4 18 1-18 52-69 (133)
16 2eqm_A PHD finger protein 20-l 94.2 0.0071 2.4E-07 44.7 -0.3 23 1-23 55-79 (88)
17 3nrw_A Phage integrase/site-sp 83.5 11 0.00037 27.4 11.0 89 108-220 4-93 (117)
18 3fk2_A Glucocorticoid receptor 57.8 83 0.0028 26.3 13.2 19 209-227 227-245 (246)
19 2kd1_A DNA integration/recombi 56.3 49 0.0017 23.2 7.6 88 108-220 3-90 (118)
20 2ee4_A RHO GTPase activating p 52.0 92 0.0032 25.2 9.3 140 82-227 26-204 (209)
21 2kkp_A Phage integrase; SAM-li 51.3 58 0.002 22.6 8.3 88 108-220 4-92 (117)
22 1use_A VAsp, vasodilator-stimu 31.9 65 0.0022 20.5 3.9 28 115-149 15-42 (45)
23 1p94_A Plasmid partition prote 28.2 93 0.0032 21.7 4.7 38 76-124 34-71 (76)
24 2kkv_A Integrase; protein stru 26.5 1.7E+02 0.0057 20.5 9.0 86 108-220 4-89 (121)
25 1dtc_A Acetyl-delta-toxin; NMR 26.3 54 0.0018 18.2 2.4 20 205-224 4-23 (26)
26 1pbw_A Rhogap domain, phosphat 25.3 2.7E+02 0.0092 22.5 10.8 143 82-227 24-200 (216)
27 4hg1_A Putative cytoplasmic pr 24.8 25 0.00087 29.0 1.3 27 79-105 47-73 (225)
28 1tx4_A P50-rhogap; complex (GT 24.2 2.7E+02 0.0091 22.1 11.4 141 82-225 25-198 (198)
No 1
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=100.00 E-value=4.4e-56 Score=376.63 Aligned_cols=168 Identities=40% Similarity=0.610 Sum_probs=148.7
Q ss_pred CcceEEeCChhHHHHHHHHHHhhhhCCceeeCCCCCCHHHHHHHHHHhhcccCC--chhhhHHHHHHHHHHHHhhhcCcc
Q 025994 76 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDG--LVADSTGEIVKGLRCYFDKALPIM 153 (245)
Q Consensus 76 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~L~~LP~~~tV~~IL~~y~~~~~~~~~--~~~~~~~e~~~Gl~~yFn~~L~~~ 153 (245)
+++++|.||+.||.+|||||++||++++|++|||++||++||++|+++...... .....+.|+++||+.|||++||.+
T Consensus 3 ~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~~ 82 (181)
T 2f5j_A 3 RVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQ 82 (181)
T ss_dssp ---CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHcccc
Confidence 467899999999999999999999999999999999999999999999876442 123478999999999999999999
Q ss_pred CCChhhHhhHHHhhhc--CCCCCcccchHHHHHHHhhhHHHhhhccCCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccCC
Q 025994 154 LLYKSEREQYEDSMAA--DVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRYH 230 (245)
Q Consensus 154 LLY~~ER~Qy~~~~~~--~~~~S~~YG~~HLLRL~vkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n~~~~f~-~~Y~ 230 (245)
|||++||+||.++++. +.+||++|||+|||||||+||+||+.|+||+++++.|+.++.+||+||++|.++||. ++|+
T Consensus 83 LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~ 162 (181)
T 2f5j_A 83 LLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYE 162 (181)
T ss_dssp SCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEE
T ss_pred cCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhcC
Confidence 9999999999999863 458999999999999999999999999999999999999999999999999999995 9999
Q ss_pred CCCHHHHHhcccC
Q 025994 231 SAEDVETSANKQE 243 (245)
Q Consensus 231 ~~~~~Y~~~a~~~ 243 (245)
+++|+|+++|.+.
T Consensus 163 ~~~~eY~~~~~~~ 175 (181)
T 2f5j_A 163 VAPPEYHRKAVLE 175 (181)
T ss_dssp ECCHHHHC-----
T ss_pred CCCHHHHHHHhhh
Confidence 9999999999875
No 2
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-53 Score=366.82 Aligned_cols=164 Identities=41% Similarity=0.627 Sum_probs=142.6
Q ss_pred CcceEEeCChhHHHHHHHHHHhhhhCCceeeCCCCCCHHHHHHHHHHhhcccC------------C--------------
Q 025994 76 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYRSKKD------------G-------------- 129 (245)
Q Consensus 76 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~L~~LP~~~tV~~IL~~y~~~~~~~~------------~-------------- 129 (245)
+++|+|.||+.||.+|||||++||++++|++|||++||++||++|+++..... +
T Consensus 5 ~~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 2y0n_A 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAE 84 (211)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------CT
T ss_pred CceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccchh
Confidence 46789999999999999999999999999999999999999999998865210 0
Q ss_pred chhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhc------------CCCCCcccchHHHHHHHhhhHHHhhhcc
Q 025994 130 LVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAA------------DVSPSSVYGAEHLLRLFVKLPELLVHAK 197 (245)
Q Consensus 130 ~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~ER~Qy~~~~~~------------~~~~S~~YG~~HLLRL~vkLP~ll~~t~ 197 (245)
...+.++|+++||+.|||++||.+|||++||+||.++++. +.+||++|||+|||||||+||+||+.|+
T Consensus 85 ~~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t~ 164 (211)
T 2y0n_A 85 KNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMS 164 (211)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcCC
Confidence 1234689999999999999999999999999999999842 3589999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHchhhhcc-ccCCCCCHHHHHh
Q 025994 198 IEEETLTLLQHKLVDLLKFLQKHQSTFFL-SRYHSAEDVETSA 239 (245)
Q Consensus 198 ~d~~~~~~l~~~l~~fl~fL~~n~~~~f~-~~Y~~~~~~Y~~~ 239 (245)
||+++++.|+.++++||+||++|.++||. ++|++++++|++.
T Consensus 165 ~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~~~~~~~~~~ 207 (211)
T 2y0n_A 165 FSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYST 207 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEECC-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCChhccCCCCHHHHhh
Confidence 99999999999999999999999999996 8999998888765
No 3
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=99.47 E-value=6.2e-15 Score=114.40 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=33.5
Q ss_pred CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhhh
Q 025994 1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDE 36 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~~ 36 (245)
.|||++|||||+++||||+||||+++|++|++++++
T Consensus 66 ~GWn~~WDEWV~~drllk~neeN~~~qk~L~~~~~~ 101 (110)
T 3oa6_A 66 NGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVA 101 (110)
T ss_dssp TTSCGGGCEEEEGGGEEECCHHHHHHHHHHHHHHHC
T ss_pred CCcCcchhhccChhhhhcCCHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999988744
No 4
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=99.45 E-value=1.3e-14 Score=111.27 Aligned_cols=35 Identities=31% Similarity=0.297 Sum_probs=33.1
Q ss_pred CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhh
Q 025994 1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRD 35 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~ 35 (245)
.|||++||||||+|||+|+|+||+++|++|+++++
T Consensus 66 ~GWn~rwDEWV~edRilk~~eeN~~~q~~L~~~~~ 100 (101)
T 3m9q_A 66 QGWRPSYDRAVRATVLLKDTEENRQLQRELAEAAK 100 (101)
T ss_dssp TTSCGGGCEEECGGGEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCcCceeecCHHHcccCCHHHHHHHHHHHHHcc
Confidence 49999999999999999999999999999998874
No 5
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=99.41 E-value=2.6e-14 Score=110.79 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=34.0
Q ss_pred CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhhh
Q 025994 1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDE 36 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~~ 36 (245)
.|||++||||||++||||+|+||+++|++|++++.+
T Consensus 66 ~GWn~~wDEWV~e~rllk~~eeN~~~q~~L~~~a~~ 101 (110)
T 3m9p_A 66 NGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVA 101 (110)
T ss_dssp TTSCGGGCEEEEGGGEEECCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchhhccCHhhhhcCCHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999998854
No 6
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=99.41 E-value=4.2e-14 Score=111.96 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=35.5
Q ss_pred CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhhhhhh
Q 025994 1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDEDKN 39 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~~~k~ 39 (245)
.|||++|||||+++||||+|++|+++|++|+++++.+++
T Consensus 82 ~GWn~~WDEWV~e~rvlk~~eeN~~lqk~L~~~a~~~~~ 120 (130)
T 3e9g_A 82 QGWKSSWDEWVGYDRIRAYNEENIAMKKRLANEAKEAKK 120 (130)
T ss_dssp TTSCGGGCEEEETTTEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhhccCHhhhhccCHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999965443
No 7
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=99.34 E-value=1.7e-13 Score=105.33 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=34.5
Q ss_pred CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhhhh
Q 025994 1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRDED 37 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~~~ 37 (245)
.|||++|||||+++||+|+|+||+++|++|+++++.+
T Consensus 59 ~GwNkR~DEWV~~~Rl~k~t~en~~~q~~L~~~~~~~ 95 (102)
T 2f5k_A 59 SGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQ 95 (102)
T ss_dssp TTSCGGGCEEEEGGGEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCceeeccHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 3899999999999999999999999999999998654
No 8
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.5e-13 Score=109.13 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=33.1
Q ss_pred CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhh
Q 025994 1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRD 35 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~ 35 (245)
.|||++|||||+++|||++|+||+++|++|+++++
T Consensus 84 ~GWn~rwDEWV~~dRil~~~eeN~~~qKeL~~kak 118 (136)
T 2k3y_A 84 QGWKSSWDEWVGYDRIRAYNEENIAMKKRLANEAG 118 (136)
T ss_dssp TTSCGGGCEEEETTTEEESCHHHHHHHHHHHHHSC
T ss_pred CCcCCcceeeecHhhhhhCCHhHhHHHHHHHHHHH
Confidence 38999999999999999999999999999998883
No 9
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=98.97 E-value=2e-13 Score=101.81 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=32.9
Q ss_pred CCCCCCcccccccCCCCCCCHHHHhhchhHHhhhh
Q 025994 1 MREAGSWDEWVGVHRLMKDTEANRHRQPVFTKKRD 35 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~eeN~~~qk~L~~~~~ 35 (245)
.|||++|||||+++||+|+|+||+++|++|+++++
T Consensus 49 ~GwNkR~DEWV~~~Rl~k~t~en~~~q~~l~~~~~ 83 (85)
T 2lrq_A 49 AGWSKNWDEWVPENRVLKYNDDNVKRRQELARQCG 83 (85)
Confidence 38999999999999999999999999999998873
No 10
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=98.45 E-value=1.8e-08 Score=73.37 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCCCCCcccccccCCCCCCCHHHHhh
Q 025994 1 MREAGSWDEWVGVHRLMKDTEANRHR 26 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~eeN~~~ 26 (245)
.|||++|||||+++||++++++|++-
T Consensus 46 ~gwnkr~DEWV~~~ri~~~~~~~~~~ 71 (76)
T 2lcc_A 46 YGWNVRYDEWVKADRIIWPLDKGLEH 71 (76)
T ss_dssp TTSCCSSCEEEEGGGEECSSCSSCCC
T ss_pred CCcCCCceEecChhhccccccchhhh
Confidence 49999999999999999999999863
No 11
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=97.98 E-value=1.3e-06 Score=65.58 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.9
Q ss_pred CCCCCCcccccccCCCCCCCHH
Q 025994 1 MREAGSWDEWVGVHRLMKDTEA 22 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk~~ee 22 (245)
.|||++|||||+++||++.+++
T Consensus 55 ~g~NkRlDEWV~~~RL~~~~~~ 76 (92)
T 2bud_A 55 VGLNRRLDGWVGRHRISDNADD 76 (92)
T ss_dssp SSSCTTTCEEEETTTEESCHHH
T ss_pred CCcccccccccCHHHhchhccc
Confidence 3899999999999999998765
No 12
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.38 E-value=4.1e-05 Score=57.67 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCCCCCcccccccCCCC
Q 025994 1 MREAGSWDEWVGVHRLM 17 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~l 17 (245)
.|||++|||||+++||.
T Consensus 62 ~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 62 VNYNKRLDEWITTDRIN 78 (94)
T ss_dssp TTSCSTTCEEEETTTBC
T ss_pred CCcCcccccccCHHHcc
Confidence 48999999999999995
No 13
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=6.8e-05 Score=55.68 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=15.8
Q ss_pred CCCCCCcccccccCCCC
Q 025994 1 MREAGSWDEWVGVHRLM 17 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~l 17 (245)
.|||++|||||+.+||.
T Consensus 51 ~g~NkRlDEWV~~~rl~ 67 (87)
T 2eko_A 51 IDFNRRLDEWVTHERLD 67 (87)
T ss_dssp CSSCSCCCEEECTTTBC
T ss_pred CCCCcccccccCHhHcc
Confidence 48999999999999995
No 14
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=4.7e-05 Score=57.15 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=15.6
Q ss_pred CCCCCCcccccccCCCC
Q 025994 1 MREAGSWDEWVGVHRLM 17 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~l 17 (245)
.|||++|||||+.+||.
T Consensus 60 ~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 60 VNYNKRLDEWITTDRIN 76 (92)
T ss_dssp TTSCTTSCEEEEGGGEE
T ss_pred CCcCcccccccCHhHcc
Confidence 48999999999999994
No 15
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=97.28 E-value=6.5e-05 Score=60.00 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.4
Q ss_pred CCCCCCcccccccCCCCC
Q 025994 1 MREAGSWDEWVGVHRLMK 18 (245)
Q Consensus 1 ~~~~~~WDeWV~e~r~lk 18 (245)
.|||++|||||+++||.-
T Consensus 52 ~gwNkR~DEWV~~~ri~~ 69 (133)
T 1wgs_A 52 VGFNRRLDEWVDKNRLAL 69 (133)
T ss_dssp TTTCSSCCEEECTTTSCC
T ss_pred cCcCCCceeecChhhccc
Confidence 489999999999999964
No 16
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=94.24 E-value=0.0071 Score=44.73 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.7
Q ss_pred CCCCCCcccccccC--CCCCCCHHH
Q 025994 1 MREAGSWDEWVGVH--RLMKDTEAN 23 (245)
Q Consensus 1 ~~~~~~WDeWV~e~--r~lk~~eeN 23 (245)
.||+++|||||+.+ ||++..-.+
T Consensus 55 dGW~~~yDeWv~~dS~~I~P~g~~~ 79 (88)
T 2eqm_A 55 ERWSHRYDEWIYWDSNRLRPLERPA 79 (88)
T ss_dssp SSSTTTEEEEEETTSCCEECCCCCC
T ss_pred CCCCCcccEEeeCCCCcEecccccc
Confidence 39999999999987 888765433
No 17
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=83.47 E-value=11 Score=27.39 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCC-CCCcccchHHHHHHH
Q 025994 108 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADV-SPSSVYGAEHLLRLF 186 (245)
Q Consensus 108 P~~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~ER~Qy~~~~~~~~-~~S~~YG~~HLLRL~ 186 (245)
|...|+.+.+++|+.+.. .+ .....+..-...|+.|++.+-.. +. .+++ -...++-+.+
T Consensus 4 ~~~~t~~~~~~~fl~~l~-~~-~s~~Ti~~Y~~~l~~f~~~l~~~-----------------~~~~l~~-it~~~i~~y~ 63 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ-TD-AADASIKSFRYRLKHFVEWAEER-----------------DITAMRE-LTGWKLDEYE 63 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT-TT-SCHHHHHHHHHHHHHHHHHHHHT-----------------TCCSGGG-CCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHHHc-----------------CCCChHH-CCHHHHHHHH
Confidence 677899999999999886 22 22223344445555555432110 01 1111 2344555555
Q ss_pred hhhHHHhhhccCCHHHHHHHHHHHHHHHHHHHHc
Q 025994 187 VKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 220 (245)
Q Consensus 187 vkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n 220 (245)
..| ....+.+.+++.....|..|++|+.+.
T Consensus 64 ~~l----~~~~~s~~Ti~~~ls~lr~f~~~l~~~ 93 (117)
T 3nrw_A 64 TFR----RGSDVSPATLNGEMQTLKNWLEYLARI 93 (117)
T ss_dssp HHH----HTSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 443 224688999999999999999999875
No 18
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=57.82 E-value=83 Score=26.32 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHchhhhccc
Q 025994 209 KLVDLLKFLQKHQSTFFLS 227 (245)
Q Consensus 209 ~l~~fl~fL~~n~~~~f~~ 227 (245)
....|+++|-+|.+.+|.+
T Consensus 227 ~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 227 TYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHHHHHHTHHHHHC-
T ss_pred HHHHHHHHHHHhHHHhcCC
Confidence 4568999999999999863
No 19
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=56.27 E-value=49 Score=23.17 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCCCCCcccchHHHHHHHh
Q 025994 108 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFV 187 (245)
Q Consensus 108 P~~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~ER~Qy~~~~~~~~~~S~~YG~~HLLRL~v 187 (245)
|..+|+.+++++|++......+ ..........+..||-..+|..-| ++ -...++..++.
T Consensus 3 ~~~~t~~~~~~~~~~~~~~~~~--~~T~~~y~~~l~~~i~~~~g~~~l------------------~~-it~~~i~~~~~ 61 (118)
T 2kd1_A 3 PSKLSYGEYLESWFNTKRHSVG--IQTAKVLKGYLNSRIIPSLGNIKL------------------AK-LTSLHMQNYVN 61 (118)
T ss_dssp CSCSBHHHHHHHHHHHHHHHHC--HHHHHHHHHHHTTTHHHHTTSSBG------------------GG-CCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHhhhHhhCcCCH------------------Hh-CCHHHHHHHHH
Confidence 5678999999999986431111 111122222233333333443221 22 13445555555
Q ss_pred hhHHHhhhccCCHHHHHHHHHHHHHHHHHHHHc
Q 025994 188 KLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 220 (245)
Q Consensus 188 kLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n 220 (245)
.|- ...+.+.+++.....+..|+.|..++
T Consensus 62 ~l~----~~g~s~~t~~~~~~~l~~~~~~a~~~ 90 (118)
T 2kd1_A 62 SLR----DEGLKRGTIEKIIKVIRNSLEHAIDL 90 (118)
T ss_dssp HHH----HHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 432 23467888999999999999999865
No 20
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=52.00 E-value=92 Score=25.16 Aligned_cols=140 Identities=14% Similarity=0.230 Sum_probs=73.3
Q ss_pred eCChhHHHHHHHHHHhhhhC----CceeeCCCCCC-HHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHhhhcCccCC-
Q 025994 82 QIPPPLKKQLVDDCEFITHL----GKLVKLPRTPN-VDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLL- 155 (245)
Q Consensus 82 ~iP~~Lk~~LvdD~e~Itk~----~~L~~LP~~~t-V~~IL~~y~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LL- 155 (245)
.+|..+..++ +.|.+. --|+++|...+ |.++.+.|-+.....-......+..++.-|+.||-.. +.-|+
T Consensus 26 ~vP~iv~~~i----~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreL-PePLi~ 100 (209)
T 2ee4_A 26 PIPLFVEKCV----EFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADL-PDPLIP 100 (209)
T ss_dssp CSCHHHHHHH----HHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHS-SSCSSC
T ss_pred CCChHHHHHH----HHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhC-CCccCC
Confidence 5887776543 223322 24777887644 4555555443211100000112455666688888764 43333
Q ss_pred Ch--------------hhHhh-HHHhhhcCCCCCcccchHHHHHHHhhhHHHhhhccCCHHHHHHHHH------------
Q 025994 156 YK--------------SEREQ-YEDSMAADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQH------------ 208 (245)
Q Consensus 156 Y~--------------~ER~Q-y~~~~~~~~~~S~~YG~~HLLRL~vkLP~ll~~t~~d~~~~~~l~~------------ 208 (245)
|. .||.+ ...++ ...++....=..+|+++|.++-.--....|+...+..+..
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~~ 179 (209)
T 2ee4_A 101 YSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENRE 179 (209)
T ss_dssp TTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccHH
Confidence 21 11111 11122 2234444445566677776655544456677776654322
Q ss_pred ------HHHHHHHHHHHchhhhccc
Q 025994 209 ------KLVDLLKFLQKHQSTFFLS 227 (245)
Q Consensus 209 ------~l~~fl~fL~~n~~~~f~~ 227 (245)
....++++|-.|.+.+|.+
T Consensus 180 ~l~~~~~~~~vve~LI~~~~~iF~~ 204 (209)
T 2ee4_A 180 FLSTTKIHQSVVETFIQQCQFFFYN 204 (209)
T ss_dssp CSCCCTTHHHHHHHHHHTHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHhhHHHcCC
Confidence 2467999999999999973
No 21
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=51.29 E-value=58 Score=22.57 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHhhcccC-CchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCCCCCcccchHHHHHHH
Q 025994 108 PRTPNVDDILEKYCDYRSKKD-GLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLF 186 (245)
Q Consensus 108 P~~~tV~~IL~~y~~~~~~~~-~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~ER~Qy~~~~~~~~~~S~~YG~~HLLRL~ 186 (245)
|...|+.+++++|++...... +.. ........+..+|...+|..-+-.. ...++.+++
T Consensus 4 ~~~~t~~~~~~~~l~~~~~~~~~~~--T~~~y~~~~~~~i~~~~g~~~l~~I-------------------t~~~i~~~~ 62 (117)
T 2kkp_A 4 PSKITVEQWLNRWLTDYAKPHLRQS--TWESYETVLRLHVIPTLGSIPLKKL-------------------QPADIQRLY 62 (117)
T ss_dssp SCCSCHHHHHHHHHHHHTSCCCSCC--CCSHHHHHHHHHHCCCCCTSCTTTC-------------------CHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHhccCCCcc--HHHHHHHHHHHHhccccCceEHHHC-------------------CHHHHHHHH
Confidence 667899999999998642111 111 1111122344445444453322222 344555555
Q ss_pred hhhHHHhhhccCCHHHHHHHHHHHHHHHHHHHHc
Q 025994 187 VKLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 220 (245)
Q Consensus 187 vkLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n 220 (245)
..|- ...+.+.+++.....+..|++|..++
T Consensus 63 ~~l~----~~~~s~~t~~~~~~~l~~~~~~A~~~ 92 (117)
T 2kkp_A 63 ASKL----ESGLSPTRVRYIHVVLHEAMSQARES 92 (117)
T ss_dssp HHHH----HTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH----HcCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 5432 23467888999999999999998765
No 22
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=31.89 E-value=65 Score=20.49 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=19.2
Q ss_pred HHHHHHHHhhcccCCchhhhHHHHHHHHHHHHhhh
Q 025994 115 DILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKA 149 (245)
Q Consensus 115 ~IL~~y~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~ 149 (245)
+||+++.+.... .-.|++++|+..|++.
T Consensus 15 EIL~E~RkElqK-------~K~EIIeAi~~El~~~ 42 (45)
T 1use_A 15 ELLEEVKKELQK-------VKEEIIEAFVQELRKR 42 (45)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 566666554432 3368999999999874
No 23
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=28.22 E-value=93 Score=21.69 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=27.5
Q ss_pred CcceEEeCChhHHHHHHHHHHhhhhCCceeeCCCCCCHHHHHHHHHHhh
Q 025994 76 ENFVNIQIPPPLKKQLVDDCEFITHLGKLVKLPRTPNVDDILEKYCDYR 124 (245)
Q Consensus 76 ~~~i~i~iP~~Lk~~LvdD~e~Itk~~~L~~LP~~~tV~~IL~~y~~~~ 124 (245)
...++|.||+.|...|-.-+.. ...||.+|+.+.++..
T Consensus 34 ~~Rlti~i~~~lh~rlK~~Aa~-----------~g~Smsdvvreli~~~ 71 (76)
T 1p94_A 34 IKRVNVNFDEEKHTRFKAACAR-----------KGTSITDVVNQLVDNW 71 (76)
T ss_dssp EEECCEEEEHHHHHHHHHHHHH-----------HTCCHHHHHHHHHHHH
T ss_pred ceeEEEEcCHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHH
Confidence 3567899999999988764331 2258999998877643
No 24
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=26.46 E-value=1.7e+02 Score=20.45 Aligned_cols=86 Identities=12% Similarity=0.217 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhHhhHHHhhhcCCCCCcccchHHHHHHHh
Q 025994 108 PRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSEREQYEDSMAADVSPSSVYGAEHLLRLFV 187 (245)
Q Consensus 108 P~~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~ER~Qy~~~~~~~~~~S~~YG~~HLLRL~v 187 (245)
+...|+.+++++|++.. ... ...........+..|+...+|..-| +++ -..++..++.
T Consensus 4 ~~~~t~~~~~~~wl~~~-~~~--~~~T~~~y~~~l~~~i~~~~g~~~l------------------~~I-t~~~i~~~~~ 61 (121)
T 2kkv_A 4 SGAYTFETIAREWHESN-KRW--SEDHRSRVLRYLELYIFPHIGSSDI------------------RQL-KTSHLLAPIK 61 (121)
T ss_dssp CCCCSHHHHHHHHHTTC-CSS--CHHHHHHHHHHHHHHHSSSSTTSCT------------------TCC-CSGGGHHHHH
T ss_pred cccCcHHHHHHHHHHHc-CCC--CHHHHHHHHHHHHhhcCchhcCCCH------------------HHc-CHHHHHHHHH
Confidence 45679999999999865 211 1112222333445555444554322 111 2234444444
Q ss_pred hhHHHhhhccCCHHHHHHHHHHHHHHHHHHHHc
Q 025994 188 KLPELLVHAKIEEETLTLLQHKLVDLLKFLQKH 220 (245)
Q Consensus 188 kLP~ll~~t~~d~~~~~~l~~~l~~fl~fL~~n 220 (245)
.|-. ...+.+++.+...+..|++|..+.
T Consensus 62 ~l~~-----~~s~~t~~~~~~~l~~~~~~A~~~ 89 (121)
T 2kkv_A 62 EVDT-----SGKHDVAQRLQQRVTAIMRYAVQN 89 (121)
T ss_dssp HHHH-----TTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----cCCHHHHHHHHHHHHHHHHHHHHc
Confidence 4321 125678899999999999998764
No 25
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=26.32 E-value=54 Score=18.22 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHchhhh
Q 025994 205 LLQHKLVDLLKFLQKHQSTF 224 (245)
Q Consensus 205 ~l~~~l~~fl~fL~~n~~~~ 224 (245)
-|.+.+.+|++|+.+...+|
T Consensus 4 DIisTIgdfvKlI~~TV~KF 23 (26)
T 1dtc_A 4 DIISTIGDLVKWIIDTVNKF 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46788999999998877655
No 26
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=25.28 E-value=2.7e+02 Score=22.47 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=69.4
Q ss_pred eCChhHHHHHHHHH-HhhhhCCceeeCCCCCCHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHhhhcCccCCChhhH
Q 025994 82 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTPNVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSER 160 (245)
Q Consensus 82 ~iP~~Lk~~LvdD~-e~Itk~~~L~~LP~~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~ER 160 (245)
.+|..+..++..=. .-+.. .-|+++|...+. +-|.+-.+.-.....-....+..++.-|+.||-. |+--|+-..=-
T Consensus 24 ~vP~iv~~~i~~l~~~gl~~-eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lLK~flRe-LPePLl~~~ly 100 (216)
T 1pbw_A 24 IAPPLLIKLVEAIEKKGLEC-STLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLD-LPNPVIPAAVY 100 (216)
T ss_dssp CSCHHHHHHHHHHHHHHTTC-TTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHHHHHHHT-SSSCSSCHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCC-CCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHHHHHHHh-CCCCCCCHHHH
Confidence 47877766532100 11222 348888887777 5554443321110011122355666667887765 44444432211
Q ss_pred hhHHH-----------------hhhc-CCCCCcccchHHHHHHHhhhHHHhhhccCCHHHHHHHH---------------
Q 025994 161 EQYED-----------------SMAA-DVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLLQ--------------- 207 (245)
Q Consensus 161 ~Qy~~-----------------~~~~-~~~~S~~YG~~HLLRL~vkLP~ll~~t~~d~~~~~~l~--------------- 207 (245)
..+.+ ++.. ..++....=..+|+++|.++-.-=....|+...+.++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~ 180 (216)
T 1pbw_A 101 SEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDNT 180 (216)
T ss_dssp HHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCchhhh
Confidence 11111 2210 22333344445566666555444344567666555422
Q ss_pred HHHHHHHHHHHHchhhhccc
Q 025994 208 HKLVDLLKFLQKHQSTFFLS 227 (245)
Q Consensus 208 ~~l~~fl~fL~~n~~~~f~~ 227 (245)
.....++++|-+|.+..|..
T Consensus 181 ~~~~~vve~LI~~~~~iF~~ 200 (216)
T 1pbw_A 181 ENLIKVIEILISTEWNERQP 200 (216)
T ss_dssp HHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhhhHHhcCC
Confidence 56788999999999999974
No 27
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=24.81 E-value=25 Score=29.01 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.0
Q ss_pred eEEeCChhHHHHHHHHHHhhhhCCcee
Q 025994 79 VNIQIPPPLKKQLVDDCEFITHLGKLV 105 (245)
Q Consensus 79 i~i~iP~~Lk~~LvdD~e~Itk~~~L~ 105 (245)
-++.+|++||.+|.-|++++.-.++.|
T Consensus 47 ET~~LPeSLkALLAYD~~L~sp~~~~V 73 (225)
T 4hg1_A 47 ETTELPESLXALLAYDRDLLSNYNMPV 73 (225)
T ss_dssp CEECCCHHHHHHHHHCTTCBCTTSCBS
T ss_pred ccccCcHHHHHHHHhhhhccCcCCCcH
Confidence 368999999999999999887555443
No 28
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=24.22 E-value=2.7e+02 Score=22.07 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=64.5
Q ss_pred eCChhHHHHHHHHH-HhhhhCCceeeCCCCC-CHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHhhhcCccCCChhh
Q 025994 82 QIPPPLKKQLVDDC-EFITHLGKLVKLPRTP-NVDDILEKYCDYRSKKDGLVADSTGEIVKGLRCYFDKALPIMLLYKSE 159 (245)
Q Consensus 82 ~iP~~Lk~~LvdD~-e~Itk~~~L~~LP~~~-tV~~IL~~y~~~~~~~~~~~~~~~~e~~~Gl~~yFn~~L~~~LLY~~E 159 (245)
.+|..+..++..=. .-+.. --|+++|... .|.++.+.|-+... .+-.....+..++.-|+.||-. |+--|+-..=
T Consensus 25 ~vP~iv~~~i~~l~~~gl~~-eGIfR~~g~~~~i~~l~~~~~~~~~-~~~~~~~d~~~~a~lLK~flre-LpePLi~~~l 101 (198)
T 1tx4_A 25 PIPIVLRETVAYLQAHALTT-EGIFRRSANTQVVREVQQKYNMGLP-VDFDQYNALHLPAVILKTFLRE-LPEPLLTFDL 101 (198)
T ss_dssp SSCHHHHHHHHHHHHHCTTC-TTTTTSCCCHHHHHHHHHHHHTTCC-CCGGGSSCTHHHHHHHHHHHHH-SSSCTTCGGG
T ss_pred CCCHHHHHHHHHHHHhCCCC-CCeeecCCcHHHHHHHHHHHhCCCC-CCccccccchHHHHHHHHHHHH-CCCcCCCHHH
Confidence 67877766542100 01222 2377777654 34444444432211 0100001233345567777765 4444443221
Q ss_pred HhhHHHhhh--------------cCCCCCcccchHHHHHHHhhhHHHhhhccCCHHHHHHH-----------------HH
Q 025994 160 REQYEDSMA--------------ADVSPSSVYGAEHLLRLFVKLPELLVHAKIEEETLTLL-----------------QH 208 (245)
Q Consensus 160 R~Qy~~~~~--------------~~~~~S~~YG~~HLLRL~vkLP~ll~~t~~d~~~~~~l-----------------~~ 208 (245)
-..+.++.. ...++....=..+|+++|.++-.-=....|+...+..+ ..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~Ll~~~~~~~~~~~~~ 181 (198)
T 1tx4_A 102 YPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAIN 181 (198)
T ss_dssp HHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhhhcccccCCCCccccHHHHH
Confidence 111111110 11233333334555555555444333445655544431 13
Q ss_pred HHHHHHHHHHHchhhhc
Q 025994 209 KLVDLLKFLQKHQSTFF 225 (245)
Q Consensus 209 ~l~~fl~fL~~n~~~~f 225 (245)
.+..|+++|-+|.+..|
T Consensus 182 ~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 182 PINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHhHHHhC
Confidence 46788899999988776
Done!